Query 001184
Match_columns 1130
No_of_seqs 850 out of 4614
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 15:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 8.6E-67 2.9E-71 634.4 80.3 565 342-1091 11-577 (577)
2 1nr0_A Actin interacting prote 100.0 1.7E-64 6E-69 614.0 71.4 575 346-1093 17-610 (611)
3 1nr0_A Actin interacting prote 100.0 1.7E-62 5.9E-67 596.5 74.6 561 317-1039 21-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 2.4E-62 8.3E-67 595.2 74.6 526 340-1037 49-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 7.5E-62 2.6E-66 645.6 64.8 615 344-1093 612-1248(1249)
6 1pgu_A Actin interacting prote 100.0 8.3E-58 2.8E-62 560.4 66.7 559 345-1040 16-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 2E-56 7E-61 593.4 64.0 570 404-1099 610-1212(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 8.3E-56 2.8E-60 556.0 64.4 596 341-1105 11-794 (902)
9 1pgu_A Actin interacting prote 100.0 1.4E-54 4.6E-59 531.9 62.3 560 406-1094 15-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 4.9E-52 1.7E-56 521.7 54.0 589 316-1051 19-794 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 4E-46 1.4E-50 472.6 58.9 551 345-1042 11-603 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 4.8E-44 1.7E-48 453.4 59.1 476 404-992 8-501 (814)
13 1vyh_C Platelet-activating fac 100.0 3.1E-44 1E-48 413.2 39.6 283 345-661 106-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 9.6E-39 3.3E-43 353.7 40.4 285 345-661 30-319 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 2.2E-38 7.4E-43 354.9 43.5 286 344-660 52-340 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 2.3E-38 7.9E-43 356.2 42.5 289 344-660 61-354 (354)
17 3frx_A Guanine nucleotide-bind 100.0 1.6E-38 5.5E-43 352.2 40.5 297 342-664 11-318 (319)
18 2ynn_A Coatomer subunit beta'; 100.0 5E-38 1.7E-42 345.7 40.6 288 342-663 7-302 (304)
19 3iz6_a 40S ribosomal protein R 100.0 1.5E-38 5.2E-43 362.0 36.2 301 338-664 56-376 (380)
20 3ow8_A WD repeat-containing pr 100.0 1.9E-37 6.3E-42 343.3 40.6 293 488-947 23-320 (321)
21 4g56_B MGC81050 protein; prote 100.0 7.3E-38 2.5E-42 352.3 36.5 294 345-666 40-346 (357)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.1E-37 1E-41 346.1 41.3 300 340-665 7-337 (345)
23 4gqb_B Methylosome protein 50; 100.0 2.1E-37 7.3E-42 345.1 38.0 297 345-664 28-332 (344)
24 1vyh_C Platelet-activating fac 100.0 2.1E-37 7E-42 356.2 38.6 286 404-796 103-409 (410)
25 1got_B GT-beta; complex (GTP-b 100.0 9.3E-37 3.2E-41 341.6 41.1 286 404-795 50-340 (340)
26 4g56_B MGC81050 protein; prote 100.0 2.9E-37 9.9E-42 347.5 35.0 311 732-1096 19-345 (357)
27 4gqb_B Methylosome protein 50; 100.0 5.8E-37 2E-41 341.6 36.3 295 766-1096 29-333 (344)
28 1r5m_A SIR4-interacting protei 100.0 2.4E-36 8.3E-41 351.0 42.6 243 406-661 42-317 (425)
29 4ery_A WD repeat-containing pr 100.0 9.6E-36 3.3E-40 329.7 44.1 286 344-662 20-311 (312)
30 2pbi_B Guanine nucleotide-bind 100.0 1E-35 3.4E-40 334.7 44.6 297 578-1037 55-354 (354)
31 2xzm_R RACK1; ribosome, transl 100.0 4.2E-36 1.4E-40 336.9 40.6 298 341-664 14-341 (343)
32 3iz6_a 40S ribosomal protein R 100.0 1.6E-36 5.4E-41 345.4 37.4 320 568-1042 47-377 (380)
33 1r5m_A SIR4-interacting protei 100.0 2.9E-36 1E-40 350.4 40.2 304 341-664 39-362 (425)
34 1erj_A Transcriptional repress 100.0 3.7E-36 1.3E-40 344.1 40.2 308 339-663 56-389 (393)
35 2ynn_A Coatomer subunit beta'; 100.0 5.3E-36 1.8E-40 329.6 39.6 248 404-664 8-260 (304)
36 2hes_X YDR267CP; beta-propelle 100.0 6.9E-36 2.4E-40 332.8 39.0 294 340-663 6-328 (330)
37 1k32_A Tricorn protease; prote 100.0 1.9E-34 6.4E-39 372.3 57.0 519 346-1042 13-639 (1045)
38 4aow_A Guanine nucleotide-bind 100.0 1.7E-35 5.9E-40 332.4 41.3 301 339-665 29-339 (340)
39 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.9E-35 1.7E-39 328.1 44.3 312 578-1047 6-342 (345)
40 3frx_A Guanine nucleotide-bind 100.0 2.3E-35 7.9E-40 326.8 40.3 247 404-664 12-268 (319)
41 2pm9_A Protein WEB1, protein t 100.0 6.2E-37 2.1E-41 355.0 28.6 293 345-664 10-338 (416)
42 4ery_A WD repeat-containing pr 100.0 1.9E-34 6.6E-39 319.2 41.3 250 404-664 18-269 (312)
43 1gxr_A ESG1, transducin-like e 100.0 5.5E-35 1.9E-39 327.8 37.4 285 346-664 8-297 (337)
44 1gxr_A ESG1, transducin-like e 100.0 3.9E-34 1.3E-38 320.8 43.2 315 316-661 11-335 (337)
45 2hes_X YDR267CP; beta-propelle 100.0 5.1E-34 1.7E-38 317.7 43.3 307 576-1040 3-328 (330)
46 3vl1_A 26S proteasome regulato 100.0 2.3E-35 7.9E-40 342.2 32.4 283 348-664 57-366 (420)
47 3dm0_A Maltose-binding peripla 100.0 1.2E-34 4.3E-39 358.1 39.5 292 345-662 380-692 (694)
48 2j04_B YDR362CP, TAU91; beta p 100.0 1.9E-35 6.6E-40 345.7 29.5 273 337-663 123-428 (524)
49 3ei3_B DNA damage-binding prot 100.0 2.7E-34 9.3E-39 328.4 38.1 290 344-663 70-382 (383)
50 3vl1_A 26S proteasome regulato 100.0 1E-34 3.4E-39 336.8 34.9 343 411-948 58-419 (420)
51 3gre_A Serine/threonine-protei 100.0 4.8E-35 1.6E-39 341.3 32.0 347 405-945 59-437 (437)
52 2xzm_R RACK1; ribosome, transl 100.0 1.5E-33 5.1E-38 316.2 42.6 246 404-664 16-286 (343)
53 2pm9_A Protein WEB1, protein t 100.0 6.8E-35 2.3E-39 337.8 29.3 318 320-664 39-415 (416)
54 2j04_B YDR362CP, TAU91; beta p 100.0 3E-35 1E-39 344.1 24.9 343 408-948 132-517 (524)
55 4e54_B DNA damage-binding prot 100.0 1.8E-34 6.3E-39 335.1 31.3 293 345-664 117-431 (435)
56 1erj_A Transcriptional repress 100.0 2.5E-33 8.5E-38 320.6 40.1 290 495-948 62-389 (393)
57 1k32_A Tricorn protease; prote 100.0 4.5E-32 1.6E-36 350.1 56.4 531 408-1096 13-639 (1045)
58 3zwl_B Eukaryotic translation 100.0 5.5E-33 1.9E-37 315.9 42.1 287 342-664 27-347 (369)
59 3odt_A Protein DOA1; ubiquitin 100.0 5.9E-33 2E-37 307.6 40.8 287 339-664 9-297 (313)
60 1sq9_A Antiviral protein SKI8; 100.0 2.4E-33 8.4E-38 322.4 38.6 294 345-664 14-396 (397)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.2E-32 7.6E-37 319.2 46.5 276 344-664 115-392 (445)
62 3v7d_B Cell division control p 100.0 1.8E-32 6.1E-37 322.3 45.0 279 343-664 117-422 (464)
63 4aow_A Guanine nucleotide-bind 100.0 1.3E-32 4.4E-37 308.9 40.1 299 404-799 33-338 (340)
64 3v7d_B Cell division control p 100.0 1.5E-32 5E-37 323.0 42.4 320 404-904 116-461 (464)
65 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.2E-32 1.1E-36 317.9 44.4 316 449-948 113-442 (445)
66 1k8k_C P40, ARP2/3 complex 41 100.0 4.8E-33 1.6E-37 316.9 36.3 293 346-669 7-367 (372)
67 3i2n_A WD repeat-containing pr 100.0 2.9E-33 1E-37 316.6 33.5 289 345-664 16-354 (357)
68 3k26_A Polycomb protein EED; W 100.0 1.9E-33 6.6E-38 319.3 31.6 290 345-662 16-365 (366)
69 4a11_B DNA excision repair pro 100.0 2.7E-33 9.2E-38 323.4 31.4 352 566-1095 22-406 (408)
70 3zwl_B Eukaryotic translation 100.0 1.3E-31 4.6E-36 304.4 44.7 320 534-1047 25-353 (369)
71 4h5i_A Guanine nucleotide-exch 100.0 1E-32 3.5E-37 311.1 32.5 300 346-664 13-344 (365)
72 4aez_A CDC20, WD repeat-contai 100.0 4.1E-32 1.4E-36 311.9 38.1 291 344-667 88-384 (401)
73 3ei3_B DNA damage-binding prot 100.0 1.2E-31 4E-36 306.5 41.6 306 571-1040 57-382 (383)
74 3gre_A Serine/threonine-protei 100.0 1.3E-32 4.4E-37 320.7 33.1 311 320-660 33-437 (437)
75 4e54_B DNA damage-binding prot 100.0 8.5E-33 2.9E-37 321.1 30.9 304 579-1044 111-434 (435)
76 1sq9_A Antiviral protein SKI8; 100.0 4.1E-32 1.4E-36 312.2 35.8 294 490-949 9-396 (397)
77 3dwl_C Actin-related protein 2 100.0 1.3E-33 4.5E-38 322.1 23.2 285 346-661 10-377 (377)
78 4gga_A P55CDC, cell division c 100.0 1.8E-31 6.2E-36 308.5 40.5 282 349-664 107-396 (420)
79 2pm7_B Protein transport prote 100.0 9.4E-32 3.2E-36 294.5 34.0 252 404-663 4-285 (297)
80 2pm7_B Protein transport prote 100.0 1.3E-31 4.5E-36 293.3 34.4 247 344-618 6-284 (297)
81 2j04_A TAU60, YPL007P, hypothe 100.0 1.3E-32 4.3E-37 310.3 26.2 316 346-787 14-350 (588)
82 3k26_A Polycomb protein EED; W 100.0 3.4E-31 1.2E-35 300.7 38.2 317 493-948 14-366 (366)
83 3dm0_A Maltose-binding peripla 100.0 2.2E-31 7.4E-36 329.1 39.0 248 404-664 377-633 (694)
84 3dw8_B Serine/threonine-protei 100.0 1.8E-31 6.1E-36 312.3 35.8 300 343-661 24-444 (447)
85 4ggc_A P55CDC, cell division c 100.0 1.5E-30 5.3E-35 288.9 40.5 281 350-664 28-316 (318)
86 4h5i_A Guanine nucleotide-exch 100.0 4.3E-31 1.5E-35 297.9 35.6 203 832-1041 132-344 (365)
87 4a11_B DNA excision repair pro 100.0 8.7E-31 3E-35 302.3 38.0 300 345-664 41-366 (408)
88 3i2n_A WD repeat-containing pr 100.0 6.8E-31 2.3E-35 297.1 35.2 252 403-664 12-292 (357)
89 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-30 5.1E-35 296.2 38.3 247 404-663 3-274 (372)
90 2j04_A TAU60, YPL007P, hypothe 100.0 9.5E-33 3.3E-37 311.3 19.0 316 407-894 13-349 (588)
91 3odt_A Protein DOA1; ubiquitin 100.0 2.7E-30 9.4E-35 286.1 37.7 239 404-664 13-256 (313)
92 1yfq_A Cell cycle arrest prote 100.0 1E-30 3.5E-35 293.7 34.0 279 345-660 9-321 (342)
93 3bg1_A Protein SEC13 homolog; 100.0 2.6E-31 9E-36 293.7 27.6 248 345-618 11-292 (316)
94 1p22_A F-BOX/WD-repeat protein 100.0 2.1E-30 7E-35 301.3 36.0 273 345-665 131-416 (435)
95 3dwl_C Actin-related protein 2 100.0 1.2E-31 4.1E-36 305.8 24.5 244 405-662 7-280 (377)
96 3bg1_A Protein SEC13 homolog; 100.0 2.7E-31 9.2E-36 293.6 25.8 249 404-662 8-292 (316)
97 3mmy_A MRNA export factor; mRN 100.0 4.3E-30 1.5E-34 291.8 34.9 288 338-661 29-344 (368)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-30 4.3E-35 299.8 30.0 295 349-664 36-343 (402)
99 4gga_A P55CDC, cell division c 100.0 3.3E-29 1.1E-33 289.5 41.3 285 767-1096 105-397 (420)
100 4aez_A CDC20, WD repeat-contai 100.0 1.7E-29 5.8E-34 290.1 33.8 284 407-799 89-381 (401)
101 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-29 4.7E-34 285.2 31.6 296 344-664 8-338 (351)
102 4ggc_A P55CDC, cell division c 100.0 2.6E-28 8.9E-33 270.8 41.2 283 769-1096 27-317 (318)
103 3dw8_B Serine/threonine-protei 100.0 5.6E-29 1.9E-33 291.1 34.9 248 407-664 26-374 (447)
104 1yfq_A Cell cycle arrest prote 100.0 6.6E-29 2.3E-33 278.9 33.7 250 404-664 6-283 (342)
105 3jrp_A Fusion protein of prote 100.0 5.2E-29 1.8E-33 284.2 32.9 252 345-623 9-291 (379)
106 3jrp_A Fusion protein of prote 100.0 5.2E-29 1.8E-33 284.2 31.3 253 404-664 6-288 (379)
107 1p22_A F-BOX/WD-repeat protein 100.0 2.9E-28 1E-32 283.1 35.1 233 406-664 130-366 (435)
108 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.6E-28 1.2E-32 283.6 35.9 299 348-664 5-392 (450)
109 3mmy_A MRNA export factor; mRN 100.0 3E-28 1E-32 276.5 34.2 295 485-948 27-346 (368)
110 3f3f_A Nucleoporin SEH1; struc 100.0 3.6E-28 1.2E-32 273.6 33.2 210 449-664 6-250 (351)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 2.5E-28 8.5E-33 280.7 27.8 246 411-664 36-300 (402)
112 3vu4_A KMHSV2; beta-propeller 100.0 8.1E-28 2.8E-32 270.3 29.9 277 345-664 17-337 (355)
113 3vu4_A KMHSV2; beta-propeller 100.0 3.2E-27 1.1E-31 265.4 34.0 239 405-664 15-272 (355)
114 2w18_A PALB2, fancn, partner a 100.0 9.5E-27 3.3E-31 246.1 34.7 219 766-1038 110-355 (356)
115 3jro_A Fusion protein of prote 100.0 2.4E-28 8.3E-33 303.0 26.5 251 345-621 7-287 (753)
116 2xyi_A Probable histone-bindin 100.0 1E-27 3.5E-32 277.6 30.0 265 340-620 121-411 (430)
117 3bws_A Protein LP49; two-domai 100.0 6.5E-27 2.2E-31 272.2 36.5 304 328-662 101-431 (433)
118 3bws_A Protein LP49; two-domai 100.0 5.9E-26 2E-30 264.0 43.2 238 831-1094 167-432 (433)
119 1l0q_A Surface layer protein; 100.0 3E-26 1E-30 262.5 39.4 274 361-672 3-283 (391)
120 2w18_A PALB2, fancn, partner a 100.0 2.8E-26 9.7E-31 242.5 35.3 292 457-946 42-355 (356)
121 3lrv_A PRE-mRNA-splicing facto 100.0 3.3E-27 1.1E-31 264.6 29.6 279 461-948 43-333 (343)
122 2xyi_A Probable histone-bindin 100.0 1.2E-26 4.1E-31 268.6 34.2 252 404-664 123-411 (430)
123 1l0q_A Surface layer protein; 100.0 8.2E-26 2.8E-30 258.9 39.8 249 835-1097 75-345 (391)
124 3jro_A Fusion protein of prote 100.0 2.5E-27 8.6E-32 293.9 28.3 253 404-664 4-286 (753)
125 4gq1_A NUP37; propeller, trans 100.0 6.7E-27 2.3E-31 266.9 27.7 303 347-661 15-387 (393)
126 2vdu_B TRNA (guanine-N(7)-)-me 100.0 9E-26 3.1E-30 263.3 36.5 286 542-948 5-391 (450)
127 3lrv_A PRE-mRNA-splicing facto 100.0 6.5E-27 2.2E-31 262.2 24.8 267 354-662 43-332 (343)
128 1nir_A Nitrite reductase; hemo 99.9 3.7E-25 1.2E-29 261.4 40.2 332 508-1005 146-524 (543)
129 1nir_A Nitrite reductase; hemo 99.9 6.3E-25 2.1E-29 259.3 38.6 274 354-664 144-459 (543)
130 4gq1_A NUP37; propeller, trans 99.9 1E-26 3.6E-31 265.3 22.3 247 345-617 87-387 (393)
131 2ecf_A Dipeptidyl peptidase IV 99.9 6.8E-23 2.3E-27 255.9 35.6 302 347-663 36-413 (741)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-23 4.5E-28 240.8 26.0 296 347-678 62-400 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 4.2E-22 1.4E-26 248.7 35.6 246 409-662 36-366 (741)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.2E-22 7.4E-27 230.7 29.2 290 320-644 83-409 (415)
135 1xfd_A DIP, dipeptidyl aminope 99.9 6.5E-23 2.2E-27 255.4 26.3 288 348-664 17-394 (723)
136 3u4y_A Uncharacterized protein 99.9 7.6E-21 2.6E-25 211.9 36.3 280 353-664 3-305 (331)
137 1xfd_A DIP, dipeptidyl aminope 99.9 7.9E-22 2.7E-26 245.6 29.3 382 544-1043 19-446 (723)
138 3vgz_A Uncharacterized protein 99.9 2E-20 6.8E-25 210.6 34.6 276 344-654 37-335 (353)
139 2z3z_A Dipeptidyl aminopeptida 99.9 8.5E-21 2.9E-25 235.4 34.4 237 412-662 28-341 (706)
140 3u4y_A Uncharacterized protein 99.9 2.2E-20 7.6E-25 208.0 31.5 290 774-1102 4-312 (331)
141 2z3z_A Dipeptidyl aminopeptida 99.9 1.7E-20 5.7E-25 232.7 33.3 282 350-653 28-376 (706)
142 2ojh_A Uncharacterized protein 99.9 1.6E-20 5.6E-25 205.2 27.0 257 365-654 17-293 (297)
143 1ri6_A Putative isomerase YBHE 99.9 2.2E-19 7.5E-24 201.1 35.4 274 359-662 4-307 (343)
144 1ri6_A Putative isomerase YBHE 99.9 2.2E-19 7.6E-24 201.0 34.6 272 513-947 7-307 (343)
145 1pby_B Quinohemoprotein amine 99.9 1.7E-19 5.9E-24 201.4 30.4 198 837-1049 85-319 (337)
146 3vgz_A Uncharacterized protein 99.8 1E-18 3.4E-23 196.6 35.5 273 767-1085 40-335 (353)
147 2ojh_A Uncharacterized protein 99.8 1.7E-19 5.8E-24 197.1 27.2 255 324-610 20-293 (297)
148 1pby_B Quinohemoprotein amine 99.8 3.2E-19 1.1E-23 199.2 28.8 268 362-664 3-311 (337)
149 3o4h_A Acylamino-acid-releasin 99.8 1.5E-19 5E-24 218.4 26.1 272 347-662 21-314 (582)
150 1z68_A Fibroblast activation p 99.8 1.9E-19 6.5E-24 223.6 25.9 276 352-662 20-390 (719)
151 2oit_A Nucleoporin 214KDA; NH2 99.8 2.6E-18 9E-23 197.1 32.4 261 767-1038 36-331 (434)
152 3hfq_A Uncharacterized protein 99.8 7.2E-18 2.5E-22 189.0 31.2 275 738-1044 15-323 (347)
153 3pe7_A Oligogalacturonate lyas 99.8 1E-17 3.4E-22 191.2 32.0 293 345-662 28-381 (388)
154 2oit_A Nucleoporin 214KDA; NH2 99.8 3.9E-18 1.3E-22 195.7 28.4 220 347-577 36-279 (434)
155 3hfq_A Uncharacterized protein 99.8 2.3E-17 7.7E-22 184.9 34.1 245 407-662 37-316 (347)
156 3scy_A Hypothetical bacterial 99.8 7.9E-17 2.7E-21 181.6 38.6 178 833-1018 154-360 (361)
157 3o4h_A Acylamino-acid-releasin 99.8 3.2E-18 1.1E-22 206.6 28.6 235 409-661 21-274 (582)
158 4a5s_A Dipeptidyl peptidase 4 99.8 1.7E-17 5.8E-22 205.7 35.5 275 348-664 17-354 (740)
159 4a5s_A Dipeptidyl peptidase 4 99.8 8.9E-18 3.1E-22 208.2 32.9 379 544-1046 19-455 (740)
160 1z68_A Fibroblast activation p 99.8 6E-19 2.1E-23 219.1 21.8 285 349-664 61-444 (719)
161 1jmx_B Amine dehydrogenase; ox 99.8 4.8E-18 1.7E-22 190.6 26.1 245 838-1104 4-335 (349)
162 1jmx_B Amine dehydrogenase; ox 99.8 1.7E-17 5.6E-22 186.3 29.2 274 352-664 4-326 (349)
163 3scy_A Hypothetical bacterial 99.8 3.7E-16 1.3E-20 176.1 36.8 271 362-662 15-336 (361)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 8.2E-17 2.8E-21 181.4 28.4 248 834-1095 40-342 (365)
165 3pe7_A Oligogalacturonate lyas 99.8 7.5E-17 2.6E-21 184.0 26.5 253 405-664 26-330 (388)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.6E-16 1.2E-20 176.1 31.5 249 408-664 38-342 (365)
167 2oiz_A Aromatic amine dehydrog 99.7 1.4E-15 4.6E-20 170.2 34.3 312 510-930 14-360 (361)
168 3c5m_A Oligogalacturonate lyas 99.7 1E-16 3.6E-21 183.3 24.4 282 350-661 38-380 (396)
169 3c5m_A Oligogalacturonate lyas 99.7 5.4E-16 1.8E-20 177.4 23.1 180 853-1044 167-388 (396)
170 1qks_A Cytochrome CD1 nitrite 99.7 1.7E-13 5.8E-18 160.7 43.9 330 509-1004 165-547 (567)
171 2oiz_A Aromatic amine dehydrog 99.7 6.2E-15 2.1E-19 164.9 29.8 271 358-664 14-335 (361)
172 3fvz_A Peptidyl-glycine alpha- 99.7 1.7E-14 5.9E-19 159.5 29.6 245 348-619 24-322 (329)
173 3azo_A Aminopeptidase; POP fam 99.7 1.1E-14 3.7E-19 178.9 30.2 250 404-661 18-321 (662)
174 1qks_A Cytochrome CD1 nitrite 99.7 1.8E-13 6.1E-18 160.5 38.5 323 566-1049 176-547 (567)
175 1q7f_A NHL, brain tumor CG1071 99.7 1.2E-13 3.9E-18 149.8 33.7 245 346-620 28-281 (286)
176 3fvz_A Peptidyl-glycine alpha- 99.7 2E-14 6.8E-19 159.0 27.2 251 833-1096 23-324 (329)
177 2gop_A Trilobed protease; beta 99.7 2.7E-14 9.1E-19 159.9 28.5 264 346-662 13-330 (347)
178 3azo_A Aminopeptidase; POP fam 99.6 8.9E-15 3.1E-19 179.6 26.6 286 345-664 21-370 (662)
179 1q7f_A NHL, brain tumor CG1071 99.6 1.6E-13 5.6E-18 148.5 32.1 245 407-664 27-281 (286)
180 4a2l_A BT_4663, two-component 99.6 6.2E-10 2.1E-14 139.0 68.8 586 347-1094 42-659 (795)
181 4a2l_A BT_4663, two-component 99.6 7.1E-10 2.4E-14 138.4 68.6 535 347-1039 87-658 (795)
182 2xdw_A Prolyl endopeptidase; a 99.6 3.4E-13 1.2E-17 166.3 33.6 248 406-664 121-415 (710)
183 2dg1_A DRP35, lactonase; beta 99.6 6.7E-13 2.3E-17 147.4 30.6 272 348-654 6-301 (333)
184 3e5z_A Putative gluconolactona 99.6 1.4E-12 4.8E-17 141.9 31.7 242 345-622 25-289 (296)
185 2gop_A Trilobed protease; beta 99.6 6.3E-13 2.1E-17 148.6 29.1 221 834-1093 59-330 (347)
186 2dg1_A DRP35, lactonase; beta 99.6 3.9E-12 1.3E-16 141.2 34.7 236 345-610 42-301 (333)
187 3dsm_A Uncharacterized protein 99.6 2.8E-13 9.5E-18 149.4 25.2 244 834-1103 44-310 (328)
188 2z2n_A Virginiamycin B lyase; 99.6 1.6E-11 5.3E-16 133.8 38.7 282 346-664 13-296 (299)
189 2xdw_A Prolyl endopeptidase; a 99.6 7.9E-13 2.7E-17 163.0 30.8 248 346-621 123-416 (710)
190 3v9f_A Two-component system se 99.5 2.5E-08 8.5E-13 124.2 70.7 595 347-1095 18-657 (781)
191 3no2_A Uncharacterized protein 99.5 1.9E-12 6.5E-17 138.0 28.6 243 362-639 7-272 (276)
192 2bkl_A Prolyl endopeptidase; m 99.5 4.7E-13 1.6E-17 164.5 26.6 247 406-664 117-398 (695)
193 2bkl_A Prolyl endopeptidase; m 99.5 2.3E-13 7.7E-18 167.3 23.6 249 346-622 119-400 (695)
194 3e5z_A Putative gluconolactona 99.5 1.9E-12 6.5E-17 140.9 28.4 238 405-663 23-286 (296)
195 2mad_H Methylamine dehydrogena 99.5 1.7E-11 5.8E-16 136.7 36.0 201 837-1047 128-357 (373)
196 3no2_A Uncharacterized protein 99.5 1.5E-12 5.1E-17 138.9 26.1 251 844-1110 4-268 (276)
197 1rwi_B Serine/threonine-protei 99.5 2.2E-12 7.4E-17 138.3 26.1 239 349-621 25-266 (270)
198 3sjl_D Methylamine dehydrogena 99.5 4.9E-12 1.7E-16 138.2 28.9 205 836-1049 139-372 (386)
199 3dsm_A Uncharacterized protein 99.5 3.1E-12 1.1E-16 141.0 27.8 270 368-664 15-302 (328)
200 3v9f_A Two-component system se 99.5 1.8E-08 6.2E-13 125.4 64.6 539 348-1040 66-656 (781)
201 2qc5_A Streptogramin B lactona 99.5 9.4E-11 3.2E-15 127.7 38.4 279 346-661 18-298 (300)
202 2z2n_A Virginiamycin B lyase; 99.5 1.4E-10 4.7E-15 126.3 38.9 240 406-661 11-253 (299)
203 3sjl_D Methylamine dehydrogena 99.5 3.2E-11 1.1E-15 131.8 31.3 313 506-928 39-384 (386)
204 1rwi_B Serine/threonine-protei 99.5 1.1E-11 3.8E-16 132.7 26.1 239 411-664 25-265 (270)
205 2mad_H Methylamine dehydrogena 99.5 1.7E-10 5.9E-15 128.6 36.2 275 354-665 27-352 (373)
206 1yr2_A Prolyl oligopeptidase; 99.5 6.8E-12 2.3E-16 155.2 27.3 246 407-664 160-442 (741)
207 3c75_H MADH, methylamine dehyd 99.4 2.1E-11 7.3E-16 136.0 25.8 203 837-1047 180-409 (426)
208 1yr2_A Prolyl oligopeptidase; 99.4 1.1E-11 3.7E-16 153.5 25.1 247 346-622 161-444 (741)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.7E-10 5.7E-15 126.7 29.5 248 346-619 16-299 (314)
210 3c75_H MADH, methylamine dehyd 99.4 7.7E-11 2.6E-15 131.5 25.2 272 357-664 82-403 (426)
211 2qc5_A Streptogramin B lactona 99.4 2.9E-09 1E-13 115.7 37.1 240 407-661 17-258 (300)
212 1xip_A Nucleoporin NUP159; bet 99.3 1.2E-10 3.9E-15 128.1 24.6 176 834-1028 38-232 (388)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 3.9E-10 1.3E-14 123.7 28.1 245 407-663 15-299 (314)
214 3hrp_A Uncharacterized protein 99.3 1.2E-09 4.2E-14 123.6 29.8 239 348-617 131-408 (409)
215 3iuj_A Prolyl endopeptidase; h 99.3 5.8E-10 2E-14 136.4 28.8 250 346-623 127-409 (693)
216 3hrp_A Uncharacterized protein 99.3 1.6E-09 5.6E-14 122.6 30.0 253 833-1092 130-408 (409)
217 3g4e_A Regucalcin; six bladed 99.3 1.7E-09 5.8E-14 117.2 28.5 228 347-608 12-261 (297)
218 2qe8_A Uncharacterized protein 99.3 2.4E-10 8.2E-15 126.8 21.9 270 348-654 17-312 (343)
219 3g4e_A Regucalcin; six bladed 99.3 2.8E-09 9.7E-14 115.5 29.7 230 833-1084 12-263 (297)
220 3dr2_A Exported gluconolactona 99.2 2.3E-09 7.7E-14 116.8 27.2 234 345-616 42-303 (305)
221 4a0p_A LRP6, LRP-6, low-densit 99.2 1.5E-05 5.1E-10 94.6 61.5 533 423-1048 8-557 (628)
222 2ghs_A AGR_C_1268P; regucalcin 99.2 5.5E-09 1.9E-13 114.8 29.7 225 349-609 50-292 (326)
223 2qe8_A Uncharacterized protein 99.2 3.7E-10 1.3E-14 125.2 18.4 272 768-1091 17-318 (343)
224 3iuj_A Prolyl endopeptidase; h 99.2 8.7E-10 3E-14 134.9 23.0 244 406-664 125-406 (693)
225 1mda_H Methylamine dehydrogena 99.2 8.4E-10 2.9E-14 121.2 19.8 198 837-1050 127-356 (368)
226 1kb0_A Quinohemoprotein alcoho 99.1 9.4E-09 3.2E-13 124.2 29.7 192 853-1049 189-516 (677)
227 3dr2_A Exported gluconolactona 99.1 9.5E-09 3.2E-13 111.8 26.3 233 407-657 42-301 (305)
228 1xip_A Nucleoporin NUP159; bet 99.1 1E-09 3.5E-14 120.6 18.2 183 349-561 39-233 (388)
229 1yiq_A Quinohemoprotein alcoho 99.1 6.4E-09 2.2E-13 126.0 26.8 192 853-1049 182-514 (689)
230 1mda_H Methylamine dehydrogena 99.1 2.9E-09 1E-13 116.9 21.4 266 361-671 33-353 (368)
231 2ghs_A AGR_C_1268P; regucalcin 99.1 5E-08 1.7E-12 107.1 30.4 223 412-653 51-292 (326)
232 1kb0_A Quinohemoprotein alcoho 99.1 2.3E-08 7.8E-13 120.8 29.7 327 512-934 78-536 (677)
233 3q7m_A Lipoprotein YFGL, BAMB; 99.1 6.5E-08 2.2E-12 108.9 31.7 307 512-945 54-375 (376)
234 3s94_A LRP-6, low-density lipo 99.1 6.8E-05 2.3E-09 88.9 58.6 526 368-1042 16-553 (619)
235 1yiq_A Quinohemoprotein alcoho 99.1 2.6E-08 8.9E-13 120.6 29.1 82 854-937 455-538 (689)
236 3s94_A LRP-6, low-density lipo 99.1 4.3E-05 1.5E-09 90.6 54.9 525 430-1096 17-553 (619)
237 2ece_A 462AA long hypothetical 99.0 6.7E-08 2.3E-12 105.8 27.7 237 777-1028 93-399 (462)
238 3hxj_A Pyrrolo-quinoline quino 99.0 2.1E-08 7.2E-13 110.7 22.4 301 459-948 24-324 (330)
239 4a0p_A LRP6, LRP-6, low-densit 99.0 0.00019 6.6E-09 85.1 60.4 511 346-1002 35-556 (628)
240 3q7m_A Lipoprotein YFGL, BAMB; 99.0 1.3E-07 4.4E-12 106.4 28.3 285 779-1103 53-346 (376)
241 2ece_A 462AA long hypothetical 99.0 5E-08 1.7E-12 106.9 23.2 234 354-607 88-399 (462)
242 1fwx_A Nitrous oxide reductase 99.0 1.5E-07 5.2E-12 107.0 27.4 274 551-951 99-434 (595)
243 2hz6_A Endoplasmic reticulum t 99.0 1E-09 3.5E-14 122.7 9.7 190 420-629 8-202 (369)
244 3hxj_A Pyrrolo-quinoline quino 99.0 2.5E-08 8.7E-13 110.0 21.0 218 414-660 24-241 (330)
245 1fwx_A Nitrous oxide reductase 99.0 3.1E-08 1.1E-12 112.6 21.2 244 843-1105 99-442 (595)
246 2hz6_A Endoplasmic reticulum t 98.9 7.2E-10 2.5E-14 123.9 5.6 192 886-1103 8-201 (369)
247 3ei3_A DNA damage-binding prot 98.9 0.00081 2.8E-08 85.3 62.8 284 351-662 330-635 (1158)
248 1npe_A Nidogen, entactin; glyc 98.8 7.3E-06 2.5E-10 86.8 33.6 223 410-645 36-263 (267)
249 2iwa_A Glutamine cyclotransfer 98.8 6.4E-07 2.2E-11 92.4 22.3 203 834-1042 21-239 (266)
250 1kv9_A Type II quinohemoprotei 98.7 1.6E-06 5.4E-11 104.7 26.8 192 853-1049 177-497 (668)
251 1kv9_A Type II quinohemoprotei 98.7 6.2E-06 2.1E-10 99.5 31.5 136 512-655 67-252 (668)
252 2iwa_A Glutamine cyclotransfer 98.7 1.5E-06 5E-11 89.7 22.1 221 864-1096 9-239 (266)
253 3nol_A Glutamine cyclotransfer 98.7 1.6E-06 5.4E-11 88.1 21.5 187 833-1028 42-243 (262)
254 1npe_A Nidogen, entactin; glyc 98.7 1E-05 3.4E-10 85.7 28.7 204 834-1049 36-247 (267)
255 1w6s_A Methanol dehydrogenase 98.7 1.1E-05 3.7E-10 94.8 30.5 191 853-1049 181-512 (599)
256 3nok_A Glutaminyl cyclase; bet 98.6 4.1E-06 1.4E-10 84.9 22.0 186 833-1028 54-253 (268)
257 3nol_A Glutamine cyclotransfer 98.6 3.5E-06 1.2E-10 85.5 21.1 208 865-1086 32-248 (262)
258 3ott_A Two-component system se 98.6 0.0042 1.5E-07 76.5 59.3 529 347-1039 62-625 (758)
259 3nok_A Glutaminyl cyclase; bet 98.6 1.6E-06 5.5E-11 87.9 18.1 205 865-1084 44-256 (268)
260 2ad6_A Methanol dehydrogenase 98.6 1.2E-05 4.1E-10 94.8 28.1 191 853-1049 175-503 (571)
261 1w6s_A Methanol dehydrogenase 98.6 6.7E-06 2.3E-10 96.6 25.2 249 839-1105 111-514 (599)
262 2ad6_A Methanol dehydrogenase 98.6 1.8E-05 6E-10 93.4 28.9 110 512-629 63-195 (571)
263 3ott_A Two-component system se 98.6 0.0055 1.9E-07 75.5 69.2 573 347-1094 21-626 (758)
264 3mbr_X Glutamine cyclotransfer 98.6 1.5E-05 5.3E-10 80.2 23.8 189 832-1028 19-222 (243)
265 1k3i_A Galactose oxidase precu 98.5 7E-06 2.4E-10 99.4 25.7 277 352-652 190-530 (656)
266 1flg_A Protein (quinoprotein e 98.5 0.00016 5.3E-09 85.3 34.9 193 838-1049 250-525 (582)
267 2xe4_A Oligopeptidase B; hydro 98.5 1.3E-05 4.6E-10 98.3 26.4 247 349-622 175-461 (751)
268 3mbr_X Glutamine cyclotransfer 98.5 2.3E-05 7.9E-10 78.9 22.9 209 865-1087 10-228 (243)
269 1flg_A Protein (quinoprotein e 98.5 0.00015 5.3E-09 85.3 33.7 192 471-666 71-358 (582)
270 2fp8_A Strictosidine synthase; 98.5 6.8E-05 2.3E-09 81.8 28.3 252 768-1040 19-313 (322)
271 2p4o_A Hypothetical protein; p 98.4 0.00011 3.8E-09 79.4 28.9 228 410-654 32-279 (306)
272 2fp8_A Strictosidine synthase; 98.4 6.4E-05 2.2E-09 82.0 27.3 255 349-619 20-313 (322)
273 2p4o_A Hypothetical protein; p 98.4 0.00019 6.5E-09 77.5 30.5 242 333-610 17-279 (306)
274 3qqz_A Putative uncharacterize 98.3 0.00048 1.6E-08 70.5 28.0 200 346-573 25-250 (255)
275 2xbg_A YCF48-like protein; pho 98.3 0.0031 1.1E-07 68.5 36.1 278 346-660 34-319 (327)
276 3v64_C Agrin; beta propeller, 98.3 0.0012 4E-08 72.5 32.9 248 347-627 33-283 (349)
277 3v65_B Low-density lipoprotein 98.3 0.00075 2.6E-08 75.2 31.6 246 349-627 78-326 (386)
278 3ei3_A DNA damage-binding prot 98.2 0.036 1.2E-06 70.3 69.6 605 339-1037 366-1059(1158)
279 1ijq_A LDL receptor, low-densi 98.2 0.001 3.6E-08 71.8 29.3 207 833-1047 29-245 (316)
280 3qqz_A Putative uncharacterize 98.2 0.00092 3.2E-08 68.4 26.6 205 831-1039 24-252 (255)
281 3v64_C Agrin; beta propeller, 98.2 0.0015 5.1E-08 71.6 30.2 211 345-584 70-283 (349)
282 1ijq_A LDL receptor, low-densi 98.1 0.0073 2.5E-07 65.1 35.2 230 369-627 9-246 (316)
283 2xbg_A YCF48-like protein; pho 98.1 0.0071 2.4E-07 65.6 35.0 195 834-1038 122-320 (327)
284 3v65_B Low-density lipoprotein 98.1 0.00099 3.4E-08 74.2 28.4 212 345-585 113-327 (386)
285 3p5b_L Low density lipoprotein 98.1 0.0022 7.5E-08 71.7 29.6 232 846-1098 84-324 (400)
286 1k3i_A Galactose oxidase precu 98.0 0.00032 1.1E-08 84.8 24.2 234 414-653 190-476 (656)
287 2xe4_A Oligopeptidase B; hydro 98.0 0.0006 2.1E-08 83.6 26.4 200 406-617 169-398 (751)
288 3tc9_A Hypothetical hydrolase; 98.0 0.001 3.4E-08 75.3 26.3 249 835-1093 138-429 (430)
289 3tc9_A Hypothetical hydrolase; 97.9 0.0011 3.9E-08 74.9 24.6 240 411-661 138-428 (430)
290 3p5b_L Low density lipoprotein 97.9 0.019 6.5E-07 64.0 34.2 233 369-627 91-328 (400)
291 3sov_A LRP-6, low-density lipo 97.9 0.0092 3.1E-07 64.2 30.2 231 369-627 12-246 (318)
292 3sov_A LRP-6, low-density lipo 97.9 0.0027 9.2E-08 68.3 25.6 209 348-584 35-246 (318)
293 4hw6_A Hypothetical protein, I 97.9 0.0021 7.1E-08 72.6 25.3 251 835-1093 140-432 (433)
294 3amr_A 3-phytase; beta-propell 97.9 0.0086 3E-07 63.5 27.5 197 844-1048 39-272 (355)
295 2xzh_A Clathrin heavy chain 1; 97.8 0.039 1.3E-06 57.2 30.5 238 352-621 71-334 (365)
296 4hw6_A Hypothetical protein, I 97.8 0.0044 1.5E-07 70.0 26.0 239 411-662 140-432 (433)
297 3kya_A Putative phosphatase; s 97.7 0.0076 2.6E-07 67.9 26.7 255 835-1096 140-477 (496)
298 3m0c_C LDL receptor, low-densi 97.7 0.01 3.5E-07 72.0 29.5 217 344-584 420-640 (791)
299 3m0c_C LDL receptor, low-densi 97.7 0.038 1.3E-06 66.9 33.4 231 369-626 403-639 (791)
300 3kya_A Putative phosphatase; s 97.6 0.03 1E-06 63.1 29.6 248 349-622 140-478 (496)
301 2xzh_A Clathrin heavy chain 1; 97.6 0.086 2.9E-06 54.7 31.3 261 566-950 48-334 (365)
302 2xtc_A F-box-like/WD repeat-co 97.6 3.5E-05 1.2E-09 61.9 3.7 35 1-35 1-35 (90)
303 1bpo_A Protein (clathrin); cla 97.5 0.078 2.7E-06 57.2 29.1 239 352-622 70-334 (494)
304 3amr_A 3-phytase; beta-propell 97.5 0.011 3.9E-07 62.6 22.7 185 470-662 42-262 (355)
305 1n7d_A LDL receptor, low-densi 97.5 0.00046 1.6E-08 83.3 12.8 207 834-1048 406-622 (699)
306 3a9g_A Putative uncharacterize 97.4 0.071 2.4E-06 58.1 28.3 233 347-606 28-329 (354)
307 2p9w_A MAL S 1 allergenic prot 97.4 0.018 6.1E-07 60.6 21.7 203 836-1040 15-265 (334)
308 1bpo_A Protein (clathrin); cla 97.4 0.22 7.6E-06 53.8 33.1 261 566-950 47-333 (494)
309 1n7d_A LDL receptor, low-densi 97.3 0.0014 4.8E-08 79.0 14.7 210 410-628 406-623 (699)
310 2p9w_A MAL S 1 allergenic prot 97.3 0.034 1.2E-06 58.4 22.7 163 350-531 15-216 (334)
311 2ism_A Putative oxidoreductase 97.3 0.055 1.9E-06 59.1 25.7 108 347-474 30-152 (352)
312 2ism_A Putative oxidoreductase 97.3 0.055 1.9E-06 59.1 25.7 100 835-936 32-153 (352)
313 3a9g_A Putative uncharacterize 97.2 0.1 3.4E-06 56.9 26.7 228 834-1082 29-330 (354)
314 3ii7_A Kelch-like protein 7; p 97.1 0.037 1.2E-06 59.3 22.1 236 846-1106 13-282 (306)
315 2xn4_A Kelch-like protein 2; s 97.0 0.072 2.5E-06 56.8 22.9 232 845-1103 16-283 (302)
316 2vpj_A Kelch-like protein 12; 97.0 0.019 6.4E-07 61.4 18.1 227 854-1106 31-288 (301)
317 3pbp_A Nucleoporin NUP82; beta 97.0 0.039 1.3E-06 59.7 19.1 150 838-990 25-207 (452)
318 2g8s_A Glucose/sorbosone dehyd 96.8 0.5 1.7E-05 51.4 27.0 111 348-474 18-147 (353)
319 2g8s_A Glucose/sorbosone dehyd 96.7 0.3 1E-05 53.1 24.9 242 835-1092 19-350 (353)
320 2vpj_A Kelch-like protein 12; 96.7 0.11 3.7E-06 55.4 21.1 188 843-1043 61-281 (301)
321 1zgk_A Kelch-like ECH-associat 96.7 0.095 3.2E-06 56.0 20.2 239 842-1107 22-298 (308)
322 3sre_A PON1, serum paraoxonase 96.6 0.54 1.8E-05 50.6 25.5 194 834-1038 50-296 (355)
323 3ii7_A Kelch-like protein 7; p 96.5 0.23 7.9E-06 52.9 22.1 192 843-1044 54-276 (306)
324 3das_A Putative oxidoreductase 96.5 1.2 4E-05 47.7 26.8 114 346-475 30-158 (347)
325 4asc_A Kelch repeat and BTB do 96.5 0.28 9.4E-06 52.5 22.5 228 853-1106 12-287 (315)
326 3sre_A PON1, serum paraoxonase 96.4 1.3 4.6E-05 47.5 30.9 199 412-618 52-297 (355)
327 3das_A Putative oxidoreductase 96.3 1.5 5.1E-05 46.9 27.1 201 833-1041 31-293 (347)
328 2be1_A Serine/threonine-protei 96.3 0.024 8.1E-07 60.6 12.2 205 888-1101 11-239 (339)
329 3pbp_A Nucleoporin NUP82; beta 96.3 0.15 5.3E-06 55.1 18.2 149 886-1036 31-208 (452)
330 2xn4_A Kelch-like protein 2; s 96.3 0.26 8.8E-06 52.4 20.6 188 844-1044 61-280 (302)
331 3sbq_A Nitrous-oxide reductase 96.1 2.4 8.2E-05 47.5 29.1 100 835-937 324-454 (638)
332 1xi4_A Clathrin heavy chain; a 95.9 0.65 2.2E-05 58.2 23.3 97 566-672 47-143 (1630)
333 2uvk_A YJHT; unknown function, 95.9 0.53 1.8E-05 51.4 21.1 244 844-1107 19-353 (357)
334 4asc_A Kelch repeat and BTB do 95.8 0.43 1.5E-05 51.0 19.6 195 840-1045 41-282 (315)
335 3s25_A Hypothetical 7-bladed b 95.8 2.3 8E-05 44.6 24.6 177 838-1042 57-257 (302)
336 2woz_A Kelch repeat and BTB do 95.7 1.2 4.2E-05 47.4 22.9 223 854-1102 24-293 (318)
337 1zgk_A Kelch-like ECH-associat 95.7 0.39 1.4E-05 51.1 18.5 188 844-1044 70-291 (308)
338 1xi4_A Clathrin heavy chain; a 95.6 0.33 1.1E-05 60.8 19.1 239 353-623 71-335 (1630)
339 3s25_A Hypothetical 7-bladed b 95.4 3.2 0.00011 43.6 26.0 181 352-577 57-256 (302)
340 2uvk_A YJHT; unknown function, 95.2 0.62 2.1E-05 50.8 18.6 59 987-1048 286-350 (357)
341 1tl2_A L10, protein (tachylect 95.1 0.089 3E-06 51.3 9.5 145 835-986 42-201 (236)
342 1uuj_A Platelet-activating fac 95.1 0.014 4.8E-07 46.6 3.2 53 5-57 10-64 (88)
343 2woz_A Kelch repeat and BTB do 95.0 1 3.5E-05 48.1 19.1 196 840-1046 52-293 (318)
344 1tl2_A L10, protein (tachylect 94.7 0.14 4.7E-06 50.0 9.7 148 876-1034 42-204 (236)
345 1cru_A Protein (soluble quinop 93.9 5.5 0.00019 44.7 22.5 107 874-982 26-160 (454)
346 2be1_A Serine/threonine-protei 93.7 1.3 4.6E-05 47.0 15.9 190 423-624 12-236 (339)
347 1cru_A Protein (soluble quinop 93.6 11 0.00039 42.0 31.0 113 347-474 26-162 (454)
348 4hvt_A Ritya.17583.B, post-pro 93.0 16 0.00055 43.4 25.4 247 351-621 132-431 (711)
349 3qhy_B Beta-lactamase inhibito 92.6 7.2 0.00024 40.4 19.4 220 348-619 24-246 (282)
350 2zwa_A Leucine carboxyl methyl 91.7 5.9 0.0002 47.4 19.8 199 419-623 396-639 (695)
351 3sbq_A Nitrous-oxide reductase 91.5 4.7 0.00016 45.2 16.6 229 843-1094 140-408 (638)
352 3qhy_B Beta-lactamase inhibito 91.5 9.3 0.00032 39.6 18.6 184 835-1041 64-247 (282)
353 2zwa_A Leucine carboxyl methyl 90.3 6.8 0.00023 46.9 18.5 198 843-1044 396-639 (695)
354 4hvt_A Ritya.17583.B, post-pro 87.4 29 0.001 41.2 20.9 243 413-662 132-429 (711)
355 3q6k_A 43.2 kDa salivary prote 87.3 12 0.00042 40.3 15.8 153 940-1094 124-306 (381)
356 2wg3_C Hedgehog-interacting pr 86.4 46 0.0016 37.1 25.7 55 411-465 15-79 (463)
357 4gq2_M Nucleoporin NUP120; bet 85.2 22 0.00077 44.0 19.1 41 1010-1050 236-276 (950)
358 2nxp_A Transcription initiatio 84.9 1.6 5.4E-05 40.4 6.4 66 67-133 48-113 (156)
359 3b7f_A Glycosyl hydrolase, BNR 84.3 51 0.0017 35.8 25.6 262 833-1103 54-379 (394)
360 3q6k_A 43.2 kDa salivary prote 83.8 51 0.0017 35.4 21.4 172 855-1028 124-342 (381)
361 2j4b_A TAF5, transcription ini 82.2 0.96 3.3E-05 40.7 3.6 57 67-125 29-85 (138)
362 2wg3_C Hedgehog-interacting pr 79.9 81 0.0028 35.1 28.1 114 348-475 14-157 (463)
363 2j49_A Transcription initiatio 79.5 1 3.5E-05 41.0 2.9 52 67-120 31-82 (148)
364 3uc1_A DNA gyrase subunit A; D 74.5 89 0.003 32.8 24.5 210 767-995 41-279 (327)
365 3b7f_A Glycosyl hydrolase, BNR 73.6 1.1E+02 0.0036 33.2 30.7 236 409-657 54-366 (394)
366 4fhn_B Nucleoporin NUP120; pro 72.0 11 0.00037 48.1 10.5 42 1010-1051 238-279 (1139)
367 4gq2_M Nucleoporin NUP120; bet 66.5 51 0.0018 40.8 14.6 38 919-956 237-274 (950)
368 3no0_A DNA gyrase subunit A; D 64.7 1.3E+02 0.0043 30.7 22.2 196 889-1094 37-246 (276)
369 2zux_A YESW protein; beta-prop 64.3 1.9E+02 0.0065 32.6 25.6 179 453-643 177-424 (591)
370 1suu_A DNA gyrase subunit A; t 60.8 1.6E+02 0.0055 30.6 25.8 250 727-995 6-283 (312)
371 3kci_A Probable E3 ubiquitin-p 60.5 1.9E+02 0.0064 31.2 29.2 208 876-1094 106-345 (389)
372 4a9v_A PHOX; hydrolase, beta-p 57.6 33 0.0011 38.9 9.4 61 966-1028 476-549 (592)
373 1zi0_A DNA gyrase subunit A; b 57.6 1.8E+02 0.0061 30.1 26.8 191 419-618 1-225 (307)
374 2k9m_A RNA polymerase sigma fa 57.1 12 0.00041 33.1 4.7 90 3-104 19-122 (130)
375 3kci_A Probable E3 ubiquitin-p 56.9 2.1E+02 0.0073 30.7 32.1 243 777-1040 60-345 (389)
376 3zwu_A Alkaline phosphatase PH 54.9 36 0.0012 39.2 9.4 61 966-1028 476-549 (592)
377 2zuy_A YESX protein; beta-prop 54.7 2.8E+02 0.0096 31.4 24.4 67 576-642 355-427 (620)
378 3no0_A DNA gyrase subunit A; D 53.4 2E+02 0.0067 29.3 21.8 196 768-994 24-245 (276)
379 2wpv_A GET4, UPF0363 protein Y 53.1 46 0.0016 34.6 9.1 110 38-186 17-127 (312)
380 3lpz_A GET4 (YOR164C homolog); 50.6 55 0.0019 34.3 9.2 110 38-186 16-129 (336)
381 3zwu_A Alkaline phosphatase PH 45.0 65 0.0022 37.0 9.5 64 543-606 477-548 (592)
382 3uc1_A DNA gyrase subunit A; D 44.9 2.9E+02 0.01 28.8 23.0 172 917-1094 94-279 (327)
383 2zux_A YESW protein; beta-prop 43.5 4E+02 0.014 30.0 26.7 187 457-663 328-532 (591)
384 4d9s_A UVB-resistance protein 43.4 3.4E+02 0.012 29.2 36.1 298 768-1094 16-357 (406)
385 1sqj_A OXG-RCBH, oligoxylogluc 41.6 5.3E+02 0.018 30.9 27.1 159 347-520 14-190 (789)
386 4a9v_A PHOX; hydrolase, beta-p 41.1 93 0.0032 35.3 9.7 64 543-606 477-548 (592)
387 2lni_A Stress-induced-phosphop 37.5 1.7E+02 0.0057 24.6 9.6 90 7-102 18-112 (133)
388 2d68_A FOP, FGFR1OP; alpha hel 37.4 27 0.00093 27.7 3.3 29 7-35 20-48 (82)
389 4gco_A Protein STI-1; structur 35.3 1.4E+02 0.0049 25.6 8.5 98 14-118 22-124 (126)
390 4asv_A Small glutamine-rich te 34.2 22 0.00075 28.6 2.3 19 1-19 15-33 (92)
391 3mkr_A Coatomer subunit epsilo 33.2 1.3E+02 0.0044 30.8 9.1 85 5-100 64-156 (291)
392 3mkr_A Coatomer subunit epsilo 32.0 2E+02 0.007 29.2 10.4 83 10-99 38-126 (291)
393 3elq_A Arylsulfate sulfotransf 31.2 6.2E+02 0.021 28.6 14.6 133 968-1105 209-395 (571)
394 3f7f_A Nucleoporin NUP120; nuc 29.7 2.5E+02 0.0087 32.8 11.1 37 590-628 223-259 (729)
395 1elw_A TPR1-domain of HOP; HOP 28.4 2.3E+02 0.008 22.8 9.8 89 8-102 7-100 (118)
396 3l6v_A GYRA, DNA gyrase subuni 28.2 5.6E+02 0.019 27.2 27.8 147 418-574 4-178 (370)
397 4h3o_A Lectin; cadmium, plant 27.3 2.7E+02 0.0092 23.1 9.8 25 838-863 54-78 (105)
398 3qou_A Protein YBBN; thioredox 27.2 2.1E+02 0.0071 29.1 9.4 103 12-121 124-231 (287)
399 4fhn_B Nucleoporin NUP120; pro 25.6 3.1E+02 0.011 34.6 12.3 38 876-914 239-276 (1139)
400 4gcn_A Protein STI-1; structur 25.3 1.8E+02 0.0062 24.8 7.4 100 15-116 18-123 (127)
401 1oyi_A Double-stranded RNA-bin 25.0 48 0.0016 26.3 2.8 41 6-48 16-58 (82)
402 2cn3_A Xyloglucanase, beta-1,4 24.7 9.1E+02 0.031 28.4 24.9 259 834-1099 23-340 (737)
403 1zi0_A DNA gyrase subunit A; b 24.3 5.9E+02 0.02 26.1 28.4 189 845-1041 3-227 (307)
404 1sqj_A OXG-RCBH, oligoxylogluc 24.2 9.6E+02 0.033 28.5 22.0 164 454-625 14-206 (789)
405 1kdl_A YOPD protein; yersinia, 23.7 44 0.0015 19.3 1.7 14 6-19 5-18 (26)
406 1elr_A TPR2A-domain of HOP; HO 23.7 3.1E+02 0.01 22.6 8.7 94 9-102 8-107 (131)
407 1wp5_A Topoisomerase IV; broke 23.3 6.3E+02 0.022 26.1 26.3 192 419-619 3-225 (323)
408 4ga2_A E3 SUMO-protein ligase 22.7 2.8E+02 0.0096 24.4 8.4 94 21-121 13-111 (150)
409 3f7f_A Nucleoporin NUP120; nuc 22.6 70 0.0024 37.4 4.8 37 1011-1049 223-259 (729)
410 3l6v_A GYRA, DNA gyrase subuni 22.1 7.2E+02 0.025 26.3 27.3 196 843-1043 5-268 (370)
411 1wp5_A Topoisomerase IV; broke 21.4 6.9E+02 0.024 25.8 25.4 206 834-1040 39-277 (323)
412 2k9l_A RNA polymerase sigma fa 21.4 66 0.0022 25.1 3.0 35 3-37 28-63 (76)
413 2qfc_A PLCR protein; TPR, HTH, 20.2 3.8E+02 0.013 27.0 9.9 94 7-101 77-182 (293)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.6e-67 Score=634.38 Aligned_cols=565 Identities=23% Similarity=0.365 Sum_probs=482.0
Q ss_pred eeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 342 ~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
+..+|.+.|+|++|||||++ ||+|+.|++|+|||. +++.+. .+.+|.+.|++++|+|||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspdg 69 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPDG 69 (577)
T ss_dssp EECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTTS
T ss_pred EECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCCC
Confidence 34469999999999999994 999999999999995 566554 478999999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEE
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~ 501 (1130)
++||+++.|++|+|||+. ++.+ ..+.+|.+.|.+++|+||++ +|++++.|+.+++|+..+.......+|...+.
T Consensus 70 ~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~ 143 (577)
T 2ymu_A 70 QTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 143 (577)
T ss_dssp SEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCEE
T ss_pred CEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccccceeeeccCCCCcee
Confidence 999999999999999964 4433 36889999999999999999 89999999999999988888888999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
.+.+.+ ++..+++++.++.+++|+... ........+...+.++.++|+++++++++. ++.|++||. +++.+.
T Consensus 144 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~~~ 215 (577)
T 2ymu_A 144 GVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQ 215 (577)
T ss_dssp EEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCEEE
T ss_pred eeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcEEE
Confidence 999865 457899999999999998654 344556677888999999999999999986 899999995 677888
Q ss_pred EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.+.+|.. .+.+++|+|+++++++++.|+.|++||. +++.+..+..+. ..|.+++|+|+++.+++++.|+.+++|+.
T Consensus 216 ~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~w~~ 291 (577)
T 2ymu_A 216 TLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKLWNR 291 (577)
T ss_dssp EEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEEEEEeC
Confidence 8888766 8999999999999999999999999996 466777776554 48999999999999999999999999995
Q ss_pred CCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCc
Q 001184 662 ADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKT 741 (1130)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 741 (1130)
... ....
T Consensus 292 ~~~--~~~~----------------------------------------------------------------------- 298 (577)
T 2ymu_A 292 NGQ--LLQT----------------------------------------------------------------------- 298 (577)
T ss_dssp TSC--EEEE-----------------------------------------------------------------------
T ss_pred CCc--EEEE-----------------------------------------------------------------------
Confidence 322 0000
Q ss_pred cceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCC
Q 001184 742 KPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1130)
Q Consensus 742 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1130)
+ .+|...|.+++|+|++..+++++.|+.+++|+.....
T Consensus 299 ------------------~---~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~--------------------- 336 (577)
T 2ymu_A 299 ------------------L---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH--------------------- 336 (577)
T ss_dssp ------------------E---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE---------------------
T ss_pred ------------------E---ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---------------------
Confidence 0 2377889999999999999999999999999854311
Q ss_pred cceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEE
Q 001184 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQ 900 (1130)
Q Consensus 822 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~ 900 (1130)
+.. ..+|...+.+++|+|+|+++++++ ||.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|+
T Consensus 337 -~~~---~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 337 -LQT---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVK 410 (577)
T ss_dssp -EEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEE
T ss_pred -eEE---EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEE
Confidence 110 125788999999999999999998 899999996 5678888999999999999999 899999999999999
Q ss_pred EEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 901 IYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 901 iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
+||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +.. .... . +...+.+++|+||+++|
T Consensus 411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~----~~~~-~-~~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLL----QTLT-G-HSSSVRGVAFSPDGQTI 482 (577)
T ss_dssp EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEE----EEEE-C-CSSCEEEEEECTTSCEE
T ss_pred EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEE----EEEc-C-CCCCEEEEEEcCCCCEE
Confidence 9995 5788899999999999999999999999999999999999754 211 1111 2 33789999999999999
Q ss_pred EE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCC
Q 001184 981 LV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPN 1059 (1130)
Q Consensus 981 ~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1059 (1130)
++ +.|+.|++||. +++.+..+.+| ...|++++|+|||++||+++.||.|++||. +++.+..+.
T Consensus 483 as~~~d~~i~iw~~-~~~~~~~~~~h---~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~----------- 546 (577)
T 2ymu_A 483 ASASDDKTVKLWNR-NGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT----------- 546 (577)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-----------
T ss_pred EEEeCCCEEEEEcC-CCCEEEEEeCC---CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-----------
Confidence 98 57999999995 67888888776 789999999999999999999999999996 566665554
Q ss_pred CceeeeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001184 1060 SQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIE 1091 (1130)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~ 1091 (1130)
+|...+..++|+| |+.+|+|++.|++|++||
T Consensus 547 ~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 GHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 2445567789999 578999999999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-64 Score=614.03 Aligned_cols=575 Identities=14% Similarity=0.160 Sum_probs=459.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
+.+.+.+++|||||+ +||+++ ++.|+|||+.+++... .+.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 567889999999998 478887 5699999998776554 5789999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEecCCCeeeEecCCCcCEE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD----KLIRVWDLSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d----~~v~iwd~~~~~~~~~~~h~~~v~ 501 (1130)
+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+||++ .|++++.+ +.|++|| .+..+..+.+|...|.
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee-CCCCcceecCCCCCce
Confidence 9999999999999765543 2236789999999999999999 67777654 4788888 5667788999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
+++|+|... ..|++++.|++|++||....+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+.
T Consensus 152 ~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEee
Confidence 999976432 36999999999999999888878888999999999999999999999986 8999999999999888
Q ss_pred EEe-------cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC-CCCcceEEEcCCCCEEEEEeCC
Q 001184 582 TYI-------GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG-LPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 582 ~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
.+. +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..+.. ......+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred eeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCC
Confidence 874 4544 899999999999999999999999999999998888765421 112345555 67889999999
Q ss_pred CcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccc
Q 001184 654 QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN 733 (1130)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1130)
+.+++|+...+. ....
T Consensus 304 ~~i~~~~~~~~~-~~~~--------------------------------------------------------------- 319 (611)
T 1nr0_A 304 GFINFVNPELGS-IDQV--------------------------------------------------------------- 319 (611)
T ss_dssp CCEEEEETTTTE-EEEE---------------------------------------------------------------
T ss_pred CcEEEEeCCCCC-cceE---------------------------------------------------------------
Confidence 999999976541 1000
Q ss_pred ccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccc
Q 001184 734 LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAP 813 (1130)
Q Consensus 734 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 813 (1130)
+ .+|...|.+++|+|+|+.|++++.|+.|++||+..+
T Consensus 320 --------------------------~---~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-------------- 356 (611)
T 1nr0_A 320 --------------------------R---YGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-------------- 356 (611)
T ss_dssp --------------------------E---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------
T ss_pred --------------------------E---cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC--------------
Confidence 0 237889999999999999999999999999986542
Q ss_pred ccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEE---EeCCCCCeEEEEEeCCCCcEE
Q 001184 814 QHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT---FMSPPPASTFLAFHPQDNNII 890 (1130)
Q Consensus 814 ~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~sp~~~~~l 890 (1130)
.... .+..+|...|.+++|++++.++..+.|+.+++|++.++..... .........+++|+| ++.++
T Consensus 357 --------~~~~-~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~ 426 (611)
T 1nr0_A 357 --------ISNR-VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIA 426 (611)
T ss_dssp --------CEEE-CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCE
T ss_pred --------ceee-ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEE
Confidence 2111 1223688999999999887655554599999999877543210 011234567899999 77777
Q ss_pred EEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEE
Q 001184 891 AIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETR 970 (1130)
Q Consensus 891 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 970 (1130)
+++ .++.+++|+ .++ +..+. |...+.+++|+|||++|++++.|++|++||+.++.... ... ..+...|.+
T Consensus 427 ~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~--~~h~~~v~~ 496 (611)
T 1nr0_A 427 VAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT--IVHPAEITS 496 (611)
T ss_dssp EEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE--EECSSCEEE
T ss_pred EEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec--cCCCCceEE
Confidence 666 467899998 445 55555 88899999999999999999999999999998753211 111 124478999
Q ss_pred EEEcCCCcEEEE-EcCCcEEEEECCC-ceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccc-cc
Q 001184 971 VQFHSDQVRLLV-NHETQLAIYDGSK-MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC-RI 1047 (1130)
Q Consensus 971 ~~~s~d~~~l~~-~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~-~~ 1047 (1130)
++|+|||++|++ +.|+.+++|++.+ ++.+... ....|...|++++|+|||++||+|+.|++|++||+.++.... ..
T Consensus 497 v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~-~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~ 575 (611)
T 1nr0_A 497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN-SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 575 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC-CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE
T ss_pred EEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee-eeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh
Confidence 999999999998 5799999999987 6654431 112258899999999999999999999999999998875322 11
Q ss_pred CCCcccccCCCCCc-eeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1048 APSAYMSQASPNSQ-TVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1048 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
. .+| ...+.+++|+|+ +. |++++.|++|++|++.
T Consensus 576 ~----------~~h~~~~v~~v~fs~d-~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 576 K----------GAHAMSSVNSVIWLNE-TT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp T----------TSSTTSCEEEEEEEET-TE-EEEEETTSCEEEEECC
T ss_pred h----------ccCcccCeeEEEEcCC-CE-EEEecCCCCEEEEecc
Confidence 1 123 345677889984 55 9999999999999973
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-62 Score=596.49 Aligned_cols=561 Identities=15% Similarity=0.181 Sum_probs=449.5
Q ss_pred cccccccCCCCCcccccCC-------cccceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccc
Q 001184 317 VDEATYPVPSQQATWSLDD-------LPRAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPF 388 (1130)
Q Consensus 317 ~~~~~~s~~~~~~~~~~~~-------~~~~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~ 388 (1130)
...++|+|+|+.++...+. ........+ +|...|++++|||||+ +||+|+.||+|+|||+.+++....
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~--- 96 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK--- 96 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE---
T ss_pred eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee---
Confidence 3457888888644432221 123344444 6999999999999998 599999999999999976553321
Q ss_pred eeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC----CeEEEEEecCCccceeeeeeecCCCCeeEEEEec
Q 001184 389 KIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY 464 (1130)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~ 464 (1130)
..+.+|.+.|.+++|+|||++||+++.+ +.|++|| .++... .+.+|...|++++|+|
T Consensus 97 --------------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 97 --------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKP 157 (611)
T ss_dssp --------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECS
T ss_pred --------------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECC
Confidence 1467899999999999999999999865 4788887 444333 5789999999999999
Q ss_pred CCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec-----
Q 001184 465 PNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD----- 538 (1130)
Q Consensus 465 d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----- 538 (1130)
++.. .|++|+.|++|++|| ..++++..+.+|...|.+++|+| ++.+|++++.|++|++||+.+++....+.
T Consensus 158 ~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 158 SRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234 (611)
T ss_dssp SSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred CCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeecccccc
Confidence 9874 599999999999999 77888899999999999999975 56899999999999999998887776663
Q ss_pred --CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCc--eeEEEEEcCCCCEEEEEeCCCcEEE
Q 001184 539 --APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK--SAGVVQFDTTRNRILAAGEDNQIKF 614 (1130)
Q Consensus 539 --~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~v 614 (1130)
.|...|.+++|+|+|++|++++. |+.|++||+.+++.+..+..+... ....+.| +++.+++++.|+.+++
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~ 308 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINF 308 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEE
T ss_pred ccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEE
Confidence 68889999999999999999986 899999999999998888654221 2344555 6789999999999999
Q ss_pred EeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceee
Q 001184 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1130)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1130)
||...++....+..|. ..|.+++|+|++++|++++.|+.|++||+.++.. ...+
T Consensus 309 ~~~~~~~~~~~~~gh~--~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~-~~~~----------------------- 362 (611)
T 1nr0_A 309 VNPELGSIDQVRYGHN--KAITALSSSADGKTLFSADAEGHINSWDISTGIS-NRVF----------------------- 362 (611)
T ss_dssp EETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EECS-----------------------
T ss_pred EeCCCCCcceEEcCCC--CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eeec-----------------------
Confidence 9999988777776554 4899999999999999999999999999876521 0000
Q ss_pred ccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEE
Q 001184 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1130)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1130)
...|...|.+++
T Consensus 363 --------------------------------------------------------------------~~~h~~~v~~~~ 374 (611)
T 1nr0_A 363 --------------------------------------------------------------------PDVHATMITGIK 374 (611)
T ss_dssp --------------------------------------------------------------------SCSCSSCEEEEE
T ss_pred --------------------------------------------------------------------ccCCcceEEEEE
Confidence 022777899999
Q ss_pred EeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCC
Q 001184 775 YTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGG 854 (1130)
Q Consensus 775 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg 854 (1130)
|++++ .+++++.|+.+++|+........... ... .......+++++|+|+.++++.++
T Consensus 375 ~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~-----------------~~~----~~~~~~~~~~~s~dg~~~~~~~~~ 432 (611)
T 1nr0_A 375 TTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKA-----------------VAN----KLSSQPLGLAVSADGDIAVAACYK 432 (611)
T ss_dssp ECTTS-CEEEEETTTEEEEECSSSSSSCTTSC-----------------CEE----ECSSCEEEEEECTTSSCEEEEESS
T ss_pred ECCCC-cEEEEEcCCceEEeecCCccccccce-----------------eee----ecCCCCcEEEEeCCCcEEEEEeCc
Confidence 99766 68899999999999875432211000 000 123346789999999988888899
Q ss_pred eEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE--EEEEecCCCCeeEEEEccCCCeE
Q 001184 855 KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--KTKLKGHQKHITGLAFSTNLNIL 932 (1130)
Q Consensus 855 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~L 932 (1130)
.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.++.. +.. .+|...|++++|+|||++|
T Consensus 433 ~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~l 506 (611)
T 1nr0_A 433 HIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFL 506 (611)
T ss_dssp EEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEE
T ss_pred eEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEE
Confidence 999999 344 45554 778899999999 899999999999999999998754 233 6899999999999999999
Q ss_pred EEEeCCCcEEEEECCC-CcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCcee-e-eeeecCCCC
Q 001184 933 VSSGSDAQLIFWNTDT-WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMEC-I-RQWVPQDVL 1008 (1130)
Q Consensus 933 ~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~-~-~~~~~~~~~ 1008 (1130)
++++.|++|++|++.+ ++.... .....+...|.+++|+|||++|++ +.|++|++|++.++.. + ..+ .+|
T Consensus 507 as~s~d~~v~~w~~~~~~~~~~~----~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~---~~h 579 (611)
T 1nr0_A 507 VATDQSRKVIPYSVANNFELAHT----NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK---GAH 579 (611)
T ss_dssp EEEETTSCEEEEEGGGTTEESCC----CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET---TSS
T ss_pred EEEcCCCCEEEEEcCCCCceeee----eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh---ccC
Confidence 9999999999999986 332111 011224578999999999999998 6799999999987653 2 232 244
Q ss_pred -CCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 1009 -SSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 1009 -~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
...|++++|+||++ |++++.|++|++|++.
T Consensus 580 ~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 580 AMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred cccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 68999999999998 9999999999999973
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-62 Score=595.22 Aligned_cols=526 Identities=23% Similarity=0.377 Sum_probs=451.2
Q ss_pred eeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 340 ~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
+++.+ +|...|++++|||||+ +||+|+.|++|+|||.. ++.+. .+.+|...|.+++|+
T Consensus 49 ~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~~-------------------~~~~~~~~v~~~~~s 107 (577)
T 2ymu_A 49 LLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQ-------------------TLTGHSSSVRGVAFS 107 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEEE-------------------EECCCSSCEEEEEEC
T ss_pred EEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEEE-------------------EEECCCCCEEEEEEC
Confidence 34444 5999999999999998 59999999999999964 55443 477999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCc
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEA 498 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~ 498 (1130)
||+++|++++.|+.+++|+..... .....+|...|..+.|+|++. .+++++.++.+++|+..+........|..
T Consensus 108 ~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (577)
T 2ymu_A 108 PDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSS 181 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECTTSCEEEEEECCSS
T ss_pred CCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeeecCCc--cceecccccceeccccceeeeeeccCCCc
Confidence 999999999999999999976643 224678999999999999999 78999999999999988888888889999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.|.++++.+ ++.+|++++.|+.|++||.. .+....+..+...|.+++|+|++++|++++. ++.|++||. +++
T Consensus 182 ~v~~~~~~~--~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~~ 253 (577)
T 2ymu_A 182 SVWGVAFSP--DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQ 253 (577)
T ss_dssp CEEEEEECT--TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECT-TSC
T ss_pred ceeeeeecC--CCCEEEEEcCCCEEEEEeCC-CcEEEEEecCCCCEEEEEECCCCCEEEEEeC----CCEEEEEeC-CCC
Confidence 999999865 55799999999999999964 5566677888899999999999999999986 899999995 577
Q ss_pred eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001184 579 LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1130)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~i 658 (1130)
.+..+.+|.. .+.+++|+|+++.+++++.|+.|++||. +++.+..+..+. ..|.+++|+|+++.+++++.|+.|++
T Consensus 254 ~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~--~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 254 LLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp EEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCC--CCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 8888888765 8999999999999999999999999996 456666666554 48999999999999999999999999
Q ss_pred EEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccC
Q 001184 659 LANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDIS 738 (1130)
Q Consensus 659 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 738 (1130)
|+..... . ..
T Consensus 330 w~~~~~~-~-~~-------------------------------------------------------------------- 339 (577)
T 2ymu_A 330 WNRNGQH-L-QT-------------------------------------------------------------------- 339 (577)
T ss_dssp EETTSCE-E-EE--------------------------------------------------------------------
T ss_pred EeCCCCe-e-EE--------------------------------------------------------------------
Confidence 9965430 0 00
Q ss_pred CCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccC
Q 001184 739 DKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQP 818 (1130)
Q Consensus 739 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~ 818 (1130)
+ ..|...+.+++|+|+|+.+++++.++.+++|+...
T Consensus 340 ---------------------~---~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-------------------- 375 (577)
T 2ymu_A 340 ---------------------L---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-------------------- 375 (577)
T ss_dssp ---------------------E---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--------------------
T ss_pred ---------------------E---eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--------------------
Confidence 0 22677889999999999999999999999997421
Q ss_pred CCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 001184 819 SNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS 897 (1130)
Q Consensus 819 ~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg 897 (1130)
..+.. ..+|...|.+++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+
T Consensus 376 ---~~~~~--~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~ 448 (577)
T 2ymu_A 376 ---QLLQT--LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDK 448 (577)
T ss_dssp ---CEEEE--EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred ---CEEEE--ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCC
Confidence 11111 125888999999999999999998 899999996 5678889999999999999999 889999999999
Q ss_pred cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCC
Q 001184 898 TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 898 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 977 (1130)
.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +... ...+ +...|.+++|+|||
T Consensus 449 ~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~~~~-----~~~~-h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 449 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQ-----TLTG-HSSSVRGVAFSPDG 520 (577)
T ss_dssp EEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-CEEE-----EEEC-CSSCEEEEEECTTS
T ss_pred EEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-CEEE-----EEeC-CCCCEEEEEEcCCC
Confidence 9999996 5778889999999999999999999999999999999999643 3221 1122 33789999999999
Q ss_pred cEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 001184 978 VRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 978 ~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd 1037 (1130)
++|++ +.|+.|++||. +++.+..+.+| ...|++++|+|||++|++++.|++|++||
T Consensus 521 ~~l~s~~~dg~v~lwd~-~~~~~~~~~~h---~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSEEEEECT-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECcCEEEEEeC-CCCEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99998 57999999996 67888888776 78999999999999999999999999997
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.5e-62 Score=645.55 Aligned_cols=615 Identities=12% Similarity=0.149 Sum_probs=502.3
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.+|.+.|++++|||+|+ +||+|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|||++
T Consensus 612 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 671 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLL-------------------DIKAHEDEVLCCAFSSDDSY 671 (1249)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred ecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EeccCCCCEEEEEEecCCCE
Confidence 46999999999999998 58999999999999999998765 46799999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
||+|+.|++|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++|| .+++++..+.+|...|.+
T Consensus 672 l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 672 IATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748 (1249)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred EEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence 9999999999999999987655 678999999999999965554899999999999999 889999999999999999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC-------------CccEEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-------------GLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++ ++.+
T Consensus 749 ~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v 821 (1249)
T 3sfz_A 749 CRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKV 821 (1249)
T ss_dssp EEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEE
T ss_pred EEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcE
Confidence 99976 5579999999999999999887765544321 22678899999999999987 7899
Q ss_pred EEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEE
Q 001184 570 VEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1130)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~ 649 (1130)
.+||..++.....+...+...+.+++|+|+++++++++.||.|++||+.++..+..+..|.. .|.+++|+|+++++++
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEE
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEE
Confidence 99999999998888755566899999999999999999999999999999999888876654 8999999999999999
Q ss_pred EeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCC
Q 001184 650 TTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIE 729 (1130)
Q Consensus 650 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1130)
++.||.|++|++.+.............. ..+.+ ..
T Consensus 900 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~----------------~~~~~-----------------------------~~ 934 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKNSAIVLKQEID----------------VVFQE-----------------------------NE 934 (1249)
T ss_dssp EETTSCEEEEEHHHHHSCCSSSEEEEEE----------------EEEET-----------------------------TE
T ss_pred EeCCCeEEEEEccccceeeeecccceee----------------EEEcC-----------------------------CC
Confidence 9999999999976431110000000000 00111 11
Q ss_pred CcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccc
Q 001184 730 KPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATA 809 (1130)
Q Consensus 730 ~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 809 (1130)
..++.....+.+.+|..... ... ..+...+.+++++|++..+++++.+|.+.+|++..+
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~---------- 993 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTG----QID-------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN---------- 993 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSC----CEE-------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT----------
T ss_pred cEEEEecCCcceEEEecCcc----eEE-------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC----------
Confidence 11222222333333333221 010 014567999999999999999999999999986542
Q ss_pred ccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCc
Q 001184 810 AVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNN 888 (1130)
Q Consensus 810 ~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~ 888 (1130)
..... ..+|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...+.+++|+| ++
T Consensus 994 ------------~~~~~--~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~- 1056 (1249)
T 3sfz_A 994 ------------RVFSS--GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS- 1056 (1249)
T ss_dssp ------------SCEEE--CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-
T ss_pred ------------ceeee--cccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-
Confidence 11111 126889999999999999999998 8999999999988764 457889999999999 65
Q ss_pred EEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCe
Q 001184 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1130)
Q Consensus 889 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1130)
.+++++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++..... . .+...+
T Consensus 1057 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l-----~-~h~~~v 1130 (1249)
T 3sfz_A 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-----K-GHNGCV 1130 (1249)
T ss_dssp EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC-----C-CCSSCE
T ss_pred cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee-----c-cCCCcE
Confidence 4678999999999999999999999999999999999999999999999999999999987643322 2 234789
Q ss_pred EEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeec------CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 969 TRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVP------QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 969 ~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~------~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
.+++|+|||.+|++ +.|+.|++||+.+++.+..+.. ...|...|++++|+|||++|++++ |.|++||+.++
T Consensus 1131 ~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1131 RCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208 (1249)
T ss_dssp EEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCC
Confidence 99999999999998 5689999999999988776511 134578999999999999999885 89999999999
Q ss_pred ccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1042 RLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+.+..+..+ ...+..+.|+| ++.+|++++.||.|++|++.
T Consensus 1209 ~~~~~~~~~-----------~~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1209 DSSQTFYTN-----------GTNLKKIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp BCCCCCCCS-----------SCCCCCCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred ceeeeeecc-----------CCcccEEEECC-CCCEEEEecCCcEEEEEeec
Confidence 987766532 22344578888 57899999999999999985
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.3e-58 Score=560.42 Aligned_cols=559 Identities=11% Similarity=0.181 Sum_probs=472.9
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCC----ceeecccceeeeccccccceeeeeecCCCcc-EEEEEEcC
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR----ERLVSKPFKIWDMSNCSMMLQAAIVKDSSIS-VSRVAWSP 419 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~sp 419 (1130)
.|...|.+++|||||+ +|++++ ++.|+|||+.++ +... .+.+|... |++++|+|
T Consensus 16 ~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 3889999999999999 477777 889999999987 5443 47899999 99999999
Q ss_pred --CCCEEEEEeCCCeEEEEEecCCc-----cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEecCCC
Q 001184 420 --DGNFIGVAFTKHLIHLYTYQGSN-----DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD----KLIRVWDLSGR 488 (1130)
Q Consensus 420 --dg~~las~~~d~~i~vwd~~~~~-----~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d----~~v~iwd~~~~ 488 (1130)
|+++||+|+.||.|++||+.+++ .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE-CCC
Confidence 99999999999999999997651 1223346788999999999999999 78888887 7899999 677
Q ss_pred eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc---cEEEEEEecC-CCeEEEeeecCC
Q 001184 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL---WCTTMLYSAD-GSRLFSCGTSKE 564 (1130)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~~~~ 564 (1130)
.+..+.+|...|.+++|++... ..+++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999976432 3899999999999999999888888888888 9999999999 999999986
Q ss_pred CCcEEEEeeCCCCceeEEE-e---cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC--CCCcceE
Q 001184 565 GDSHLVEWNESEGALKRTY-I---GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG--LPSLPRL 638 (1130)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~i~~v 638 (1130)
++.|++||+.+++.+..+ . +|. ..+.+++|+ +++++++++.||.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQ-GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCC-SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEecccccccC-CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 899999999999999988 4 544 489999999 999999999999999999999999888876521 1256777
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccc
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~ 718 (1130)
.|+ ++.++++++.|+.|++|++.++ +....+.+|...+... .+
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~~-------------~~---------------------- 347 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITAL-------------TV---------------------- 347 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEEE-------------ET----------------------
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEEE-------------Ee----------------------
Confidence 886 8999999999999999999875 4444444444332210 11
Q ss_pred cCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCC
Q 001184 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1130)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1130)
++ +++++.|+.+++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++..
T Consensus 348 --------~~---l~~~~~dg~i~~w~~~---------~~~----~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 348 --------NP---LISGSYDGRIMEWSSS---------SMH----QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITK 402 (615)
T ss_dssp --------TT---TEEEETTSCEEETTTT---------EEE----CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEE
T ss_pred --------cC---cEEECCCCeEEEEEch---------hhc----CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEccc
Confidence 11 7889999999999986 112 348899999999 7788999999999999998643
Q ss_pred CCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeE
Q 001184 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAST 878 (1130)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 878 (1130)
.. ....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.
T Consensus 403 ~~-------------------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 450 (615)
T 1pgu_A 403 HE-------------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGS 450 (615)
T ss_dssp EE-------------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred Cc-------------------------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCce
Confidence 21 1126788999999999999889999999999999998887 788899
Q ss_pred EEEEeCCCCcEEEEEeC-CCcEEEEEeecCeEE-EEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceee
Q 001184 879 FLAFHPQDNNIIAIGME-DSTIQIYNVRVDEVK-TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956 (1130)
Q Consensus 879 ~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~ 956 (1130)
+++|+ +.+|++++. ||.|++||+.+++.. ..+.+|...|++++|+||+++|++++.||.|++||+.+++...
T Consensus 451 ~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~--- 524 (615)
T 1pgu_A 451 AVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT--- 524 (615)
T ss_dssp EEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---
T ss_pred EEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCccee---
Confidence 99998 679999999 999999999988766 6778899999999999999999999999999999999865432
Q ss_pred EeccCCCCCCCeEEEEEcC----------CCcEEEE-EcCCcEEEEECCCc-eeeeeeecCCCCCCCeEEEEECCCCCEE
Q 001184 957 IQLPAGKLPVGETRVQFHS----------DQVRLLV-NHETQLAIYDGSKM-ECIRQWVPQDVLSSPISSAAYSCNSQLI 1024 (1130)
Q Consensus 957 ~~~~~~~~~~~v~~~~~s~----------d~~~l~~-~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~v~~v~~s~dg~~l 1024 (1130)
.....+...+.+++|+| ++.+|++ +.|+.|++||+.++ +.+..+..| ...|++++|+||++ |
T Consensus 525 --~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~-l 598 (615)
T 1pgu_A 525 --SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH---KDGVNNLLWETPST-L 598 (615)
T ss_dssp --CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS---TTCEEEEEEEETTE-E
T ss_pred --EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC---ccceEEEEEcCCCC-e
Confidence 22222458899999999 9999998 56999999999987 677776555 78999999999999 9
Q ss_pred EEEeCCCcEEEEeCCC
Q 001184 1025 YATFTDGSIGVFDADS 1040 (1130)
Q Consensus 1025 ~t~~~Dg~i~vwd~~~ 1040 (1130)
++++.||.|++|++.+
T Consensus 599 ~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 599 VSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEETTSCEEEEEEC-
T ss_pred EEecCCceEEEEeeec
Confidence 9999999999999875
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-56 Score=593.39 Aligned_cols=570 Identities=18% Similarity=0.261 Sum_probs=471.2
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999987554 6789999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
| .+++.+..+.+|...|.+++|++..++.++++++.|+.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9 89999999999999999999998778889999999999999999999999999999999999999999999999986
Q ss_pred CCCCcEEEEeeCCCCceeEEEeccc------------CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFR------------KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG 630 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 630 (1130)
++.|++||+.+++....+.... ...+.+++|+|+++.+++++ ++.+++||+.++..+..+.. +
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~-~ 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT-G 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-S
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-C
Confidence 8999999999988777664321 12577899999999999887 68999999999988877753 3
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCC
Q 001184 631 GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSS 710 (1130)
Q Consensus 631 ~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~ 710 (1130)
+...+.+++|+|++.++++++.||.|++|++.++. ....+
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-~~~~~--------------------------------------- 878 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-KVADC--------------------------------------- 878 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-EEEEE---------------------------------------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-eeeec---------------------------------------
Confidence 34489999999999999999999999999987652 11111
Q ss_pred CCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCe
Q 001184 711 PARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGV 790 (1130)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 790 (1130)
.+|...|.+++|+|+|..+++++.||.
T Consensus 879 -----------------------------------------------------~~h~~~v~~v~~spdg~~l~s~s~dg~ 905 (1249)
T 3sfz_A 879 -----------------------------------------------------RGHLSWVHGVMFSPDGSSFLTASDDQT 905 (1249)
T ss_dssp -----------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------CCCccceEEEEECCCCCEEEEEeCCCe
Confidence 226677888888888888888888888
Q ss_pred EEeeecCCCCCCCCcccc------------------cccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe
Q 001184 791 QKLWKWNRTEQNPSGKAT------------------AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1130)
Q Consensus 791 i~iw~~~~~~~~~~~~~~------------------~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1130)
+++|++............ .......+...++.... .+...+.+++++|+++++++|+
T Consensus 906 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~sp~g~~l~~g~ 980 (1249)
T 3sfz_A 906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY-----LPEAQVSCCCLSPHLEYVAFGD 980 (1249)
T ss_dssp EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE-----ECCSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE-----cccCcEEEEEEcCCCCEEEEEc
Confidence 888876532111000000 00011222333333222 2466799999999999999998
Q ss_pred -CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCe
Q 001184 853 -GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNI 931 (1130)
Q Consensus 853 -dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 931 (1130)
+|.|++||+.+++....+.+|...|++++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|+|++ .
T Consensus 981 ~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~ 1057 (1249)
T 3sfz_A 981 EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-R 1057 (1249)
T ss_dssp TTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-E
T ss_pred CCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-c
Confidence 89999999999999999999999999999999 8999999999999999999999876 456899999999999975 6
Q ss_pred EEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCC
Q 001184 932 LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSS 1010 (1130)
Q Consensus 932 L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 1010 (1130)
+++++.|+.|++||+.+++...... .+...+.+++|+|++.++++ +.|+.+++||+.+++.+..+..| ..
T Consensus 1058 l~~~~~dg~v~vwd~~~~~~~~~~~------~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h---~~ 1128 (1249)
T 3sfz_A 1058 LLSWSFDGTVKVWNVITGRIERDFT------CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH---NG 1128 (1249)
T ss_dssp EEEEESSSEEEEEETTTTCCCEEEE------CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC---SS
T ss_pred EEEEECCCcEEEEECCCCceeEEEc------ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC---CC
Confidence 7899999999999999877543321 12367899999999999988 57999999999999988887766 78
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEE
Q 001184 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVI 1090 (1130)
Q Consensus 1011 ~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW 1090 (1130)
.|++++|+|||++|++++.||.|++||+.+++.+..+......... .+|...+..++|+| ++.+|++++ |.|++|
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~fs~-dg~~l~s~~--g~v~vw 1203 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT--ATHGGWVTDVCFSP-DSKTLVSAG--GYLKWW 1203 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---------CCSCCCEEEECT-TSSCEEEES--SSEEEB
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccc--cccCceEEEEEECC-CCCEEEECC--CeEEEE
Confidence 9999999999999999999999999999999987765332221111 23444566789999 477888885 899999
Q ss_pred eCCCCccCC
Q 001184 1091 EPSETERKW 1099 (1130)
Q Consensus 1091 ~~~~~~~~w 1099 (1130)
|+.+++...
T Consensus 1204 d~~~g~~~~ 1212 (1249)
T 3sfz_A 1204 NVATGDSSQ 1212 (1249)
T ss_dssp CSSSCBCCC
T ss_pred ECCCCceee
Confidence 999887643
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-56 Score=555.97 Aligned_cols=596 Identities=11% Similarity=0.107 Sum_probs=441.4
Q ss_pred eeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 341 ACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 341 ~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
...++|...|++++|+|+|+ +||+|+.||+|+|||..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34467999999999999998 69999999999999988766543 235788999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCee---------
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL--------- 490 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~--------- 490 (1130)
|++|++++.|++|++||+.+++++. .+. |.+.|++++|+|+++ ++++|+.||+|++|| .++.+.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987654 343 778999999999999 899999999999999 554432
Q ss_pred --eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC------------------CccEEEEEEe
Q 001184 491 --FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------------------GLWCTTMLYS 550 (1130)
Q Consensus 491 --~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~s 550 (1130)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 234679999999999874 34689999999999 9999988877666554 3579999999
Q ss_pred cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe-----cc------------cCceeEEEEEc----CCC-CEEEEEeC
Q 001184 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI-----GF------------RKKSAGVVQFD----TTR-NRILAAGE 608 (1130)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-----~~------------~~~~v~~~~~~----~~~-~~l~~~~~ 608 (1130)
|+|++|++++. |+.|++||+++++.+.... .| +...|.+++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999986 8999999999988765421 12 12368999995 443 45677766
Q ss_pred C-----CcEEEEeCC------------------CCceeEEEeccCCCCCcceEEEcC----------CCCEEEEEeCCCc
Q 001184 609 D-----NQIKFWDMD------------------NVNMLTSTEAEGGLPSLPRLRFNK----------EGNLLVVTTADQG 655 (1130)
Q Consensus 609 d-----g~i~vwd~~------------------~~~~~~~~~~~~~~~~i~~v~~s~----------~~~~l~~~~~dg~ 655 (1130)
| +.+++|++. +.+....+... +...+..+.+.+ +...+++++.|+.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22333344321 223677777755 3447889999999
Q ss_pred EEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccccc
Q 001184 656 IKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLE 735 (1130)
Q Consensus 656 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1130)
|++|++.++.........+.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~------------------------------------------------------------ 395 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQ------------------------------------------------------------ 395 (902)
T ss_dssp EEEEETTTCCEECCGGGSCG------------------------------------------------------------
T ss_pred EEEEECCCCCcccccccCCC------------------------------------------------------------
Confidence 99999865521111100000
Q ss_pred ccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccccc
Q 001184 736 DISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQH 815 (1130)
Q Consensus 736 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 815 (1130)
.+ ..|...|.++++++... .+|+......
T Consensus 396 ---------~l-----------------~~~~~~v~~~~~s~~~~-----------~~w~~~~~~~-------------- 424 (902)
T 2oaj_A 396 ---------NL-----------------SWLRPLATTSMAASVPN-----------KLWLGALSAA-------------- 424 (902)
T ss_dssp ---------GG-----------------TTBTTBEEEEEEEEEEH-----------HHHHHHHHTT--------------
T ss_pred ---------cc-----------------cccCCCeeEEEEEEcCH-----------HHHHHHHhcc--------------
Confidence 00 11445677777654321 2343211000
Q ss_pred ccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeE--EEE----e-----CCCCCeEEEEEe
Q 001184 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVM--TTF----M-----SPPPASTFLAFH 883 (1130)
Q Consensus 816 w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~--~~~----~-----~~~~~i~~l~~s 883 (1130)
..+. ....+|...+.+++|+||+++|++|+ |++|++||+.++... ..+ . +|...|.+++|+
T Consensus 425 ---~~~~----~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafs 497 (902)
T 2oaj_A 425 ---QNKD----YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFA 497 (902)
T ss_dssp ---BCCC----CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEE
T ss_pred ---cCCC----CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEec
Confidence 0000 01235777888899999999999999 999999999887431 111 1 788899999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEeecC---------------------------------------------eEEEEEecCCC
Q 001184 884 PQDNNIIAIGMEDSTIQIYNVRVD---------------------------------------------EVKTKLKGHQK 918 (1130)
Q Consensus 884 p~~~~~lasg~~dg~v~iwd~~~~---------------------------------------------~~~~~l~~h~~ 918 (1130)
| ++++||+|+.||+|+||++.++ +++..+.+|.+
T Consensus 498 p-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~ 576 (902)
T 2oaj_A 498 A-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG 576 (902)
T ss_dssp T-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred C-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence 9 8999999999999999999876 34778899999
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEc-----CCC---cEEEE-EcCCcEE
Q 001184 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFH-----SDQ---VRLLV-NHETQLA 989 (1130)
Q Consensus 919 ~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~d~---~~l~~-~~d~~i~ 989 (1130)
.|++|+||||| +||+|+.|++|++||+.+...............+...|.+++|+ ||| .+|++ +.|++|+
T Consensus 577 ~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 577 KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 99999999999 99999999999999998755432211111211345789999999 886 78887 6799999
Q ss_pred EEEC---CCceeeeeeecCC--CCCCCeEEEE-EC----------------------CCCCEEEEEeCCCcEEEEeCCCc
Q 001184 990 IYDG---SKMECIRQWVPQD--VLSSPISSAA-YS----------------------CNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 990 v~d~---~~~~~~~~~~~~~--~~~~~v~~v~-~s----------------------~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
+||+ .+|+....+.++. .|.++|.+++ |+ ++|.+|+++ +..|+||++.++
T Consensus 656 ~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~ 733 (902)
T 2oaj_A 656 TYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKS 733 (902)
T ss_dssp EEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCC
T ss_pred EEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccc
Confidence 9999 7888888887763 2357787777 65 455555544 778999999998
Q ss_pred ccccccCCCcccccCCCCCceeeeEEE---E------EcCCCCCEEEEEeCCCcEEEEeCCCCccCCcccccC
Q 001184 1042 RLRCRIAPSAYMSQASPNSQTVFPLVV---T------SHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPV 1105 (1130)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~~~~p~ 1105 (1130)
+....... +...+..+ . |++ ++..|++++.||+|++|++.+.++.-....|.
T Consensus 734 k~~~k~~~-----------~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 734 KSTHKGFK-----------YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp CEEEEECS-----------SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred cceeeEcc-----------cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhccCCc
Confidence 87765531 22222233 3 445 47899999999999999999988764444443
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.4e-54 Score=531.89 Aligned_cols=560 Identities=10% Similarity=0.113 Sum_probs=457.1
Q ss_pred cCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCC----ccceeeeeeecCCCC-eeEEEEec--CCCceEEEEEcCCC
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS----NDLCQSLEIDAHVGG-VNDLAFSY--PNKQLCIVTCGDDK 478 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~-V~~i~~s~--d~~~l~l~s~s~d~ 478 (1130)
..|.+.|.+++|+|||++||+++ ++.|++||+.++ +.. ..+.+|... |++++|+| +++ +|++++.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~---~~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPV---VQFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSE---EEECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccc---eEEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 47889999999999999999998 789999999987 443 368899999 99999999 999 899999999
Q ss_pred cEEEEe-cCC--------CeeeEecCCCcCEEEEeecccCCccEEEEEecC----CcEEEEEccCCcceeeecCCCccEE
Q 001184 479 LIRVWD-LSG--------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRVDYDAPGLWCT 545 (1130)
Q Consensus 479 ~v~iwd-~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~v~ 545 (1130)
.|++|| .++ ..+..+.+|...|.+++|++ ++.+|++++.+ +.|++|| ..+....+..|...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 999999 444 67788889999999999965 55899999887 6888887 5667778888999999
Q ss_pred EEEEecCCC-eEEEeeecCCCCcEEEEeeCCCCceeEEEecccCc--eeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc
Q 001184 546 TMLYSADGS-RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK--SAGVVQFDTT-RNRILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 546 ~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~ 621 (1130)
+++|+|+++ .+++++. ++.|++||..+++.+..+.+|... .+.+++|+|+ ++++++++.||.|++||+.+++
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999998 6888775 899999999999999999876541 6999999999 9999999999999999999999
Q ss_pred eeEEEecc--CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccc
Q 001184 622 MLTSTEAE--GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1130)
Q Consensus 622 ~~~~~~~~--~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1130)
.+..+... .+...|.+++|+ ++.+|++++.|+.|++||+.++ +....+..+...... ..
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~---------~~-------- 301 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLGN---------QQ-------- 301 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCGGG---------CE--------
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCCCcccC---------ce--------
Confidence 98887321 234489999999 9999999999999999999876 333333222100000 00
Q ss_pred cccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccC
Q 001184 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779 (1130)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 779 (1130)
.....+++..+++++.++.+++|++.... ....+ ..|...|.+++| |+
T Consensus 302 ----------------------~~~~~~~~~~l~~~~~~g~i~~~d~~~~~-----~~~~~---~~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 302 ----------------------VGVVATGNGRIISLSLDGTLNFYELGHDE-----VLKTI---SGHNKGITALTV-NP- 349 (615)
T ss_dssp ----------------------EEEEEEETTEEEEEETTSCEEEEETTEEE-----EEEEE---CCCSSCEEEEET-TT-
T ss_pred ----------------------eEEEeCCCCeEEEEECCCCEEEEECCCCc-----EEEEE---eCCCCCEEEEEe-cC-
Confidence 00011246778899999999999987622 11122 348899999999 88
Q ss_pred CeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEE
Q 001184 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSL 858 (1130)
Q Consensus 780 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~i 858 (1130)
+++++.||.+++|++. .+. .+|...|.++++ +++..+++++ |+.|++
T Consensus 350 --l~~~~~dg~i~~w~~~-------------------------~~~----~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 350 --LISGSYDGRIMEWSSS-------------------------SMH----QDHSNLIVSLDN-SKAQEYSSISWDDTLKV 397 (615)
T ss_dssp --TEEEETTSCEEETTTT-------------------------EEE----CCCCSCEEEEEC-CSTTCCEEEETTTEEEE
T ss_pred --cEEECCCCeEEEEEch-------------------------hhc----CcccCceEEEEE-CCCcEEEEEeCCCCEEE
Confidence 9999999999999753 000 258899999999 5566777776 999999
Q ss_pred EECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeC-
Q 001184 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS- 937 (1130)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~- 937 (1130)
||+.+++... .+.+++++| ++.+++++ .++.+++|++.+++.+..+. |...+++++|+ +++|++++.
T Consensus 398 ~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~ 465 (615)
T 1pgu_A 398 NGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEE 465 (615)
T ss_dssp TTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETT
T ss_pred EEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecC
Confidence 9987765432 688999999 88888777 88999999999999988887 88999999999 889999999
Q ss_pred CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEE
Q 001184 938 DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAA 1016 (1130)
Q Consensus 938 Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~ 1016 (1130)
|+.|++||+.+++... .. ...+...+.+++|+|++++|++ +.|+.|++||+.+++.+..+... |...|++++
T Consensus 466 d~~i~~~~~~~~~~~~----~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~~~ 538 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSF----DL-KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF--RTSKINAIS 538 (615)
T ss_dssp TSCEEEEETTEEEEEE----EC-SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC--CSSCEEEEE
T ss_pred CCeEEEEECCCccccc----cc-cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC--CCCceeEEE
Confidence 9999999999854321 11 2234478999999999999998 57999999999999998887651 378999999
Q ss_pred ECC----------CCCEEEEEeCCCcEEEEeCCCc-ccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC
Q 001184 1017 YSC----------NSQLIYATFTDGSIGVFDADSL-RLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG 1085 (1130)
Q Consensus 1017 ~s~----------dg~~l~t~~~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 1085 (1130)
|+| ++++|++++.||.|++||+.++ +.+..+. +|...+.+++|+|+ +. |++++.||
T Consensus 539 ~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------~h~~~v~~l~~s~~-~~-l~s~~~d~ 605 (615)
T 1pgu_A 539 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-----------AHKDGVNNLLWETP-ST-LVSSGADA 605 (615)
T ss_dssp ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-----------SSTTCEEEEEEEET-TE-EEEEETTS
T ss_pred EcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh-----------cCccceEEEEEcCC-CC-eEEecCCc
Confidence 999 9999999999999999999988 5555543 23345667889995 66 99999999
Q ss_pred cEEEEeCCC
Q 001184 1086 SVKVIEPSE 1094 (1130)
Q Consensus 1086 ~v~vW~~~~ 1094 (1130)
.|++|++..
T Consensus 606 ~v~iw~~~~ 614 (615)
T 1pgu_A 606 CIKRWNVVL 614 (615)
T ss_dssp CEEEEEEC-
T ss_pred eEEEEeeec
Confidence 999999875
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-52 Score=521.74 Aligned_cols=589 Identities=10% Similarity=0.049 Sum_probs=423.1
Q ss_pred CcccccccCCCCCcccccCCc--------ccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeeccc
Q 001184 316 SVDEATYPVPSQQATWSLDDL--------PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP 387 (1130)
Q Consensus 316 ~~~~~~~s~~~~~~~~~~~~~--------~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~ 387 (1130)
.+.+++|+|++..++....+. ..++...+.|...|++++|+| |+ +|++++.|++|+|||+.+++.+.
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~--- 93 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLT--- 93 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEE---
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEE---
Confidence 567788888886444332221 334455567889999999999 87 69999999999999999988764
Q ss_pred ceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceee--------eeeecCCCCeeE
Q 001184 388 FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS--------LEIDAHVGGVND 459 (1130)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~--------~~~~~h~~~V~~ 459 (1130)
.+. |.+.|++++|+|++++|++|+.||+|++||+.+++..... ..+.+|.+.|.+
T Consensus 94 ----------------~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 94 ----------------TVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp ----------------EEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred ----------------EEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence 232 5678999999999999999999999999999987642110 235789999999
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC------------------CcCEEEEeecccCCccEEEEEecC
Q 001184 460 LAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH------------------EAPVYSVCPHQKENIHFIFSTAVD 520 (1130)
Q Consensus 460 i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~~~l~s~s~d 520 (1130)
++|+|++.. .+++|+.|+.| +|| .+++++..+.+| ...|.+++|+| ++.+|++++.|
T Consensus 157 l~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~lasgs~D 232 (902)
T 2oaj_A 157 IQWNPRDIG-TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--NSLHIITIHED 232 (902)
T ss_dssp EEEETTEEE-EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--TSSEEEEEETT
T ss_pred EEEccCCCC-EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--CCCEEEEEECC
Confidence 999997543 78999999999 999 778888888765 57899999976 46899999999
Q ss_pred CcEEEEEccCCcceee--e---cC-------------CCccEEEEEEec----CC-CeEEEeeecCC-CCcEEEEeeCC-
Q 001184 521 GKIKAWLYDNVGSRVD--Y---DA-------------PGLWCTTMLYSA----DG-SRLFSCGTSKE-GDSHLVEWNES- 575 (1130)
Q Consensus 521 g~i~vwd~~~~~~~~~--~---~~-------------~~~~v~~~~~s~----~~-~~l~~~~~~~~-~~~~i~~wd~~- 575 (1130)
|+|++||+++++.... + .. +...|.+++|++ ++ ..+++++.+.+ ....+.+|+..
T Consensus 233 g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~ 312 (902)
T 2oaj_A 233 NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGY 312 (902)
T ss_dssp CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEE
T ss_pred CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCC
Confidence 9999999988766542 2 11 234799999964 43 45566544211 12478888842
Q ss_pred -----------------CCceeEEEecccCceeEEEEEcC----------CCCEEEEEeCCCcEEEEeCCCCceeEEE--
Q 001184 576 -----------------EGALKRTYIGFRKKSAGVVQFDT----------TRNRILAAGEDNQIKFWDMDNVNMLTST-- 626 (1130)
Q Consensus 576 -----------------~~~~~~~~~~~~~~~v~~~~~~~----------~~~~l~~~~~dg~i~vwd~~~~~~~~~~-- 626 (1130)
+++..+.+.......+..+.+.+ +...+++++.||.|++||+.++......
T Consensus 313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~ 392 (902)
T 2oaj_A 313 TPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASL 392 (902)
T ss_dssp CCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGG
T ss_pred CCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccccc
Confidence 22334444322233566676654 3347899999999999999877543220
Q ss_pred ---eccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccc
Q 001184 627 ---EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1130)
Q Consensus 627 ---~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1130)
....+...|++++|++.. .++|+.... ..
T Consensus 393 ~~~~l~~~~~~v~~~~~s~~~-----------~~~w~~~~~--------~~----------------------------- 424 (902)
T 2oaj_A 393 FPQNLSWLRPLATTSMAASVP-----------NKLWLGALS--------AA----------------------------- 424 (902)
T ss_dssp SCGGGTTBTTBEEEEEEEEEE-----------HHHHHHHHH--------TT-----------------------------
T ss_pred CCCcccccCCCeeEEEEEEcC-----------HHHHHHHHh--------cc-----------------------------
Confidence 111122355655554311 122321100 00
Q ss_pred cccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEE
Q 001184 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGIL 783 (1130)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 783 (1130)
+ ...|.+ .+|...+..++|+|+++.++
T Consensus 425 -----------------------------------~-~~~~~l-----------------~G~~~~v~sv~~spdg~~la 451 (902)
T 2oaj_A 425 -----------------------------------Q-NKDYLL-----------------KGGVRTKRQKLPAEYGTAFI 451 (902)
T ss_dssp -----------------------------------B-CCCCSC-----------------CCSBCCCCCCCCCSEEEEEE
T ss_pred -----------------------------------c-CCCCcc-----------------cCCcCCCCcccccccCcEEE
Confidence 0 000001 23566677889999999999
Q ss_pred EeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECC
Q 001184 784 ALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMM 862 (1130)
Q Consensus 784 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~ 862 (1130)
+++.|++|++||+..+..... ..+... +...+..+|...|.+++|+|||++||+|+ ||+|+|||+.
T Consensus 452 Sgs~DgtVrlWd~~~g~~~~~---------~~~~~~----l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~ 518 (902)
T 2oaj_A 452 TGHSNGSVRIYDASHGDIQDN---------ASFEVN----LSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYE 518 (902)
T ss_dssp EEETTSEEEEEESSCCTTTTT---------BCEEEE----HHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred EecCCCcEEEEECCCccccCC---------ceEEee----chhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEec
Confidence 999999999999876532100 000000 00001126888999999999999999999 8999999997
Q ss_pred Cc---------------------------------------------eeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 001184 863 NF---------------------------------------------KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS 897 (1130)
Q Consensus 863 ~~---------------------------------------------~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg 897 (1130)
++ +++..+.+|.+.|++++|+| +| +||+|+.|+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~ 596 (902)
T 2oaj_A 519 VNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAG 596 (902)
T ss_dssp ECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTS
T ss_pred CccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCC
Confidence 66 34677889999999999999 88 999999999
Q ss_pred cEEEEEeecCeEEE--E---Ee-cCCCCeeEEEEc-----cCC---CeEEEEeCCCcEEEEEC---CCCcccceeeEecc
Q 001184 898 TIQIYNVRVDEVKT--K---LK-GHQKHITGLAFS-----TNL---NILVSSGSDAQLIFWNT---DTWEKRKSIAIQLP 960 (1130)
Q Consensus 898 ~v~iwd~~~~~~~~--~---l~-~h~~~V~~l~~s-----~dg---~~L~s~s~Dg~i~vwd~---~~~~~~~~~~~~~~ 960 (1130)
+|+|||+++...+. . +. +|.+.|++|+|+ ||| ++|++++.|++|++||+ .+++......-...
T Consensus 597 tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~ 676 (902)
T 2oaj_A 597 SLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITN 676 (902)
T ss_dssp EEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEE
T ss_pred cEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCcee
Confidence 99999998887764 2 33 899999999999 886 89999999999999999 66654333222211
Q ss_pred CCCCCCCeEEEE-Ec----------------------CCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEE--
Q 001184 961 AGKLPVGETRVQ-FH----------------------SDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSA-- 1015 (1130)
Q Consensus 961 ~~~~~~~v~~~~-~s----------------------~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v-- 1015 (1130)
..+...|..++ |+ +++.+|+++ +..++||++.++++......+ ...+.++
T Consensus 677 -~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~~~---~~~~~~v~~ 751 (902)
T 2oaj_A 677 -VTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGFKY---PLAATGLSY 751 (902)
T ss_dssp -CCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEECSS---CEEEEEEEE
T ss_pred -cCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEccc---ceeeeEEEE
Confidence 11224555555 55 455555554 889999999999998777554 3455665
Q ss_pred -E------ECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCc
Q 001184 1016 -A------YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1130)
Q Consensus 1016 -~------~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1051 (1130)
. |+++|..|++++.||.|++|++.+++.+..+....
T Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 752 ISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp EEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCc
Confidence 5 78999999999999999999999999988776433
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4e-46 Score=472.56 Aligned_cols=551 Identities=13% Similarity=0.158 Sum_probs=415.9
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+. .+.+|.+.|.+++|+|||++|
T Consensus 11 ~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~l 70 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVR-------------------SIQVTETPVRAGKFIARKNWI 70 (814)
T ss_dssp EECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGGGTEE
T ss_pred cCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEE-------------------EEecCCCcEEEEEEeCCCCEE
Confidence 5999999999999998 58999999999999999988765 467899999999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC-CeeeEecCCCcCEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKLFQFEGHEAPVYS 502 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~-~~~~~~~~h~~~v~~ 502 (1130)
|+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|+.|++|| .++ .....+.+|...|.+
T Consensus 71 ~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 71 IVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (814)
T ss_dssp EEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred EEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence 999999999999999987554 6788999999999999999 799999999999999 555 667888899999999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC-ccEEEEEEec--CCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-LWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||..+++.
T Consensus 146 ~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 146 VAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKSC 220 (814)
T ss_dssp EEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETTTTEE
T ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECCCCcE
Confidence 999762 45799999999999999998887777666554 7899999999 9999999975 89999999999999
Q ss_pred eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC--EEEEEeCCCcEE
Q 001184 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN--LLVVTTADQGIK 657 (1130)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~--~l~~~~~dg~i~ 657 (1130)
+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++. +++++ .++.+.
T Consensus 221 ~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~-~~~~~~ 296 (814)
T 3mkq_A 221 VATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG-FDNGFT 296 (814)
T ss_dssp EEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEE-ETTEEE
T ss_pred EEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEE-eCCCEE
Confidence 999988765 899999999999999999999999999999999988876654 799999999987 45555 566788
Q ss_pred EEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccccccc
Q 001184 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDI 737 (1130)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1130)
+|++..+.... .++|+ +..+++++.
T Consensus 297 ~~~~~~~~~~~--------------------------~~~~~-----------------------------g~~~~~~~~ 321 (814)
T 3mkq_A 297 VLSLGNDEPTL--------------------------SLDPV-----------------------------GKLVWSGGK 321 (814)
T ss_dssp EEECSCCSCCE--------------------------EECSS-----------------------------SEEEEECCT
T ss_pred EEEcCCCCcee--------------------------EECCC-----------------------------CCEEEECcc
Confidence 89876542110 22222 111111111
Q ss_pred CCCc---------cceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccc
Q 001184 738 SDKT---------KPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1130)
Q Consensus 738 d~~i---------~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1130)
+... ..|.+...... ....... ..+...+.+++|+|+|+.+++++ ++.+.+|++...
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~--------- 387 (814)
T 3mkq_A 322 NAAASDIFTAVIRGNEEVEQDEPL-SLQTKEL---GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW--------- 387 (814)
T ss_dssp TSCTTCEEEEECCSCCCCCSSSCB-CCCCEEE---CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT---------
T ss_pred cccceeeeeeecccccccccCccc-eeeeecC---CCCccCCceeEECCCCCEEEEec-CCEEEEEECccc---------
Confidence 1110 01111111100 0001111 22566789999999999998887 899999985320
Q ss_pred cccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCC
Q 001184 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1130)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 887 (1130)
. ..+.+.+.+++|+|||+++++++ +|.|++|+. +.+|...+.+++|+| ++
T Consensus 388 --------~------------~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg 438 (814)
T 3mkq_A 388 --------R------------NKAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DR 438 (814)
T ss_dssp --------E------------EEEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CE
T ss_pred --------c------------ccCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cc
Confidence 0 02345688999999999999998 899999963 345777889999999 66
Q ss_pred ---cEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEE------eCCCcEEEEECCC----------
Q 001184 888 ---NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS------GSDAQLIFWNTDT---------- 948 (1130)
Q Consensus 888 ---~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~------s~Dg~i~vwd~~~---------- 948 (1130)
.+|++++.|+.|++||+.+++.+..+..|.. .++|+|||++|+++ +.++.+.+|--..
T Consensus 439 ~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (814)
T 3mkq_A 439 LFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGN 515 (814)
T ss_dssp EECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTC
T ss_pred eecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccC
Confidence 5788889999999999999999999988865 89999999999999 6666555554210
Q ss_pred -----CcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc-CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC
Q 001184 949 -----WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ 1022 (1130)
Q Consensus 949 -----~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~ 1022 (1130)
+......... .. ...+.+..|. +..++... .+.+..+-. ++. ..+... ..++..+.|.+++.
T Consensus 516 ~~~~~~~~~~~~~~~--~~--~~~i~s~~w~--~~~~i~~t~~~~~~~~~~--~~~-~~~~~~---~~~~~~~~~~~~~~ 583 (814)
T 3mkq_A 516 IDDSEGVDEAFDVLY--EL--SESITSGKWV--GDVFIFTTATNRLNYFVG--GKT-YNLAHY---TKEMYLLGYLARDN 583 (814)
T ss_dssp CBTTTBCTTTEEEEE--EE--CSCCSEEEEE--TTEEEEECTTSEEEEEET--TEE-EEEEEC---SSCCEEEEEEGGGT
T ss_pred Cccccchhhheeeee--Ee--ccEEEeeEEe--CCEEEEEcCCCeEEEEeC--Cee-EEEEEC---CccEEEEEEEecCC
Confidence 0000000000 00 1234455564 33333322 344444322 221 122222 45677788889999
Q ss_pred EEEEEeCCCcEEEEeCCCcc
Q 001184 1023 LIYATFTDGSIGVFDADSLR 1042 (1130)
Q Consensus 1023 ~l~t~~~Dg~i~vwd~~~~~ 1042 (1130)
.++....++.+++|++....
T Consensus 584 ~l~~~d~~~~~~~~~l~~~~ 603 (814)
T 3mkq_A 584 KVYLADREVHVYGYEISLEV 603 (814)
T ss_dssp EEEEECTTCCEEEEECCHHH
T ss_pred EEEEEcCCCCEEEEEECcHH
Confidence 99999999999999987543
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.8e-44 Score=453.43 Aligned_cols=476 Identities=15% Similarity=0.219 Sum_probs=366.7
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|.+.|.+++|+|||++||+|+.||.|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999987554 6789999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC-cceeeecCCCccEEEEEEec-CCCeEEEee
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSA-DGSRLFSCG 560 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 560 (1130)
| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++. .....+..|...|.+++|+| +++.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9 88999999999999999999975 4579999999999999999887 55567788889999999999 888999988
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
. ++.|++||+.++.....+..++...+.+++|+| +++++++++.||.|++||+.+++.+..+..+.. .|.++
T Consensus 161 ~----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~ 234 (814)
T 3mkq_A 161 L----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFA 234 (814)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEEE
T ss_pred C----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEE
Confidence 6 899999999999888888887766899999999 999999999999999999999999888876654 79999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccc
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~ 718 (1130)
+|+|+++++++++.||.|++||+.++ .....+..+...+ ...+++|+
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~v-------------~~~~~~~~------------------- 281 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLERS-------------WCIATHPT------------------- 281 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC-SEEEEECCSSSSE-------------EEEEECTT-------------------
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCCCcE-------------EEEEEccC-------------------
Confidence 99999999999999999999998776 2222222211111 11122222
Q ss_pred cCCCccccCCCCc-ccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEE-eeec
Q 001184 719 NGADSAARGIEKP-RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK-LWKW 796 (1130)
Q Consensus 719 ~~~~~~~~~~~~~-~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~-iw~~ 796 (1130)
+.. +++.+.++.+.+|++.. ....+.++|+|..+++++.+.... ++.
T Consensus 282 ----------~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 330 (814)
T 3mkq_A 282 ----------GRKNYIASGFDNGFTVLSLGN--------------------DEPTLSLDPVGKLVWSGGKNAAASDIFT- 330 (814)
T ss_dssp ----------CGGGEEEEEETTEEEEEECSC--------------------CSCCEEECSSSEEEEECCTTSCTTCEEE-
T ss_pred ----------CCceEEEEEeCCCEEEEEcCC--------------------CCceeEECCCCCEEEECcccccceeeee-
Confidence 221 13333344444454322 112345555555555444332100 000
Q ss_pred CCCCCCCCcccccccccccccCCCCcceecc--CCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCC
Q 001184 797 NRTEQNPSGKATAAVAPQHWQPSNGLLMTND--VPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPP 874 (1130)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~ 874 (1130)
......|+...+...... ....+...+.+++|+|+|++++++++|.+.+|++....... .
T Consensus 331 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~ 392 (814)
T 3mkq_A 331 -------------AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----F 392 (814)
T ss_dssp -------------EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----E
T ss_pred -------------eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----C
Confidence 000012333333222111 11245667899999999999999999999999987654433 3
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCC---CeEEEEeCCCcEEEEECCCCcc
Q 001184 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL---NILVSSGSDAQLIFWNTDTWEK 951 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg---~~L~s~s~Dg~i~vwd~~~~~~ 951 (1130)
+.+.+++|+| +++++|+++.+|.|++|+ .+.+|...|.+++|+||| .+|++++.|+.|++||+.+++.
T Consensus 393 ~~i~~~~~sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~ 463 (814)
T 3mkq_A 393 GKCQDFVWGP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTL 463 (814)
T ss_dssp EECSEEEECT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCE
T ss_pred CceEEEEEeC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcE
Confidence 4588999999 899999999999999995 346688899999999998 6899999999999999998764
Q ss_pred cceeeEeccCCCCCCCeEEEEEcCCCcEEEEE------cCCcEEEEE
Q 001184 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN------HETQLAIYD 992 (1130)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~------~d~~i~v~d 992 (1130)
.... .. ....+.|+|||++|++. .++.+.++.
T Consensus 464 ~~~~-----~~----~~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 464 VRRI-----DV----NAKDVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp EEEE-----SS----CEEEEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred EEEE-----ec----CCCEEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 3222 11 12389999999999997 666666663
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-44 Score=413.17 Aligned_cols=283 Identities=22% Similarity=0.388 Sum_probs=262.4
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|...|++++|+|+++ +|++|+.||+|+|||+.+++... .+.+|...|.+++|+|+|++|
T Consensus 106 gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGKLL 165 (410)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCCEE
Confidence 5999999999999998 69999999999999999988765 578999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
|+|+.|++|++||+.+++++. .+.+|...|.+++|+|+++ ++++|+.|++|++|| .++.++..+.+|...|.++
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 999999999999999877654 6789999999999999999 899999999999999 8899999999999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecC--------------------CCeEEEeeecC
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD--------------------GSRLFSCGTSK 563 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~~~ 563 (1130)
++++ ++.+|++++.|++|++||+.+......+..|...|.+++|+|+ |.+|++++.
T Consensus 241 ~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~-- 316 (410)
T 1vyh_C 241 RPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-- 316 (410)
T ss_dssp EECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET--
T ss_pred EECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC--
Confidence 8854 5689999999999999999999988899999999999999996 668999886
Q ss_pred CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
++.|++||+.+++++..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+
T Consensus 317 --D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~ 391 (410)
T 1vyh_C 317 --DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKT 391 (410)
T ss_dssp --TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSS
T ss_pred --CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCC
Confidence 89999999999999999998766 899999999999999999999999999999999998887655 7999999999
Q ss_pred CCEEEEEeCCCcEEEEEc
Q 001184 644 GNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~ 661 (1130)
+.+|++|+.||+|++|++
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999985
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.6e-39 Score=353.66 Aligned_cols=285 Identities=16% Similarity=0.217 Sum_probs=258.5
Q ss_pred cCCCCEEEEEEecC----CCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 345 HQGSSVVSMDFHPF----HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspd----g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
+|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++.... ..+.+|...|.+++|+|+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~~~~~~~~ 91 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVVSVDISHT 91 (321)
T ss_dssp SSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECSS
T ss_pred cCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEEEEEECCC
Confidence 59999999999986 44 699999999999999987654321 147799999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcC
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~ 499 (1130)
+.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++++.|+.|++|| .+++....+..|...
T Consensus 92 ~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~ 166 (321)
T 3ow8_A 92 LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166 (321)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred CCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCce
Confidence 9999999999999999999987654 5778899999999999999 899999999999999 888999999999999
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
|.+++|+| ++++|++++.||.|++||+++++....+..|..+|.+++|+|++++|++++. ++.|++||+++++.
T Consensus 167 v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 167 ILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHANL 240 (321)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTCCE
T ss_pred EEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCcce
Confidence 99999965 5689999999999999999999888889999999999999999999999986 89999999999999
Q ss_pred eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
...+.+|.. .+.+++|+|++++|++++.|+.|++||+.+++++..+..+.. .|.+++|+|++++|++++.|+.|++|
T Consensus 241 ~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 241 AGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp EEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 999998766 799999999999999999999999999999999998876544 89999999999999999999999999
Q ss_pred Ec
Q 001184 660 AN 661 (1130)
Q Consensus 660 ~~ 661 (1130)
|.
T Consensus 318 d~ 319 (321)
T 3ow8_A 318 DC 319 (321)
T ss_dssp EC
T ss_pred eC
Confidence 96
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-38 Score=354.89 Aligned_cols=286 Identities=19% Similarity=0.273 Sum_probs=257.6
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+. .+..|...|.+++|+|+|++
T Consensus 52 ~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~ 111 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAYAPSGNY 111 (340)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEE-------------------EEECSSSCEEEEEECTTSSE
T ss_pred cCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcce-------------------EeecCCccEEEEEECCCCCE
Confidence 35999999999999998 69999999999999999888765 46689999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCcc-ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~ 501 (1130)
||+|+.|+.|++||+.++.. ......+.+|.+.|.++.|++++. +++++.|++|++|| .+++.+..+.+|.+.|.
T Consensus 112 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp EEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCceE
Confidence 99999999999999987642 233446789999999999999875 88999999999999 88899999999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
+++|+| ++.++++++.|+.|++||+++......+..|...|.+++|+|++++|++++. ++.|++||+++++.+.
T Consensus 189 ~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~~~~~~ 262 (340)
T 1got_B 189 SLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRADQELM 262 (340)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEE
T ss_pred EEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCcEEE
Confidence 999976 5579999999999999999999988899999999999999999999999986 8999999999988877
Q ss_pred EEeccc-CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 582 TYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 582 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
.+.... ...+.+++|+|+++++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++.+|++|+.|+.|++||
T Consensus 263 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 765322 23689999999999999999999999999999999888876654 899999999999999999999999996
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.3e-38 Score=356.23 Aligned_cols=289 Identities=19% Similarity=0.254 Sum_probs=259.7
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.+|...|++++|+|+++ +||+|+.||+|+|||..+++... .+..|...|.+++|+|+|++
T Consensus 61 ~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~~~~v~~~~~sp~g~~ 120 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEH-------------------AVTMPCTWVMACAYAPSGCA 120 (354)
T ss_dssp ECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEE-------------------EEECSSSCCCEEEECTTSSE
T ss_pred cCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcce-------------------EEecCCCCEEEEEECCCCCE
Confidence 36999999999999998 59999999999999998887654 35678889999999999999
Q ss_pred EEEEeCCCeEEEEEecCCcc---ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcC
Q 001184 424 IGVAFTKHLIHLYTYQGSND---LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~---~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~ 499 (1130)
||+|+.|+.+++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++|| .+++++..+.+|...
T Consensus 121 lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHGHGAD 198 (354)
T ss_dssp EEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred EEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence 99999999999999865421 123345778999999999999999 799999999999999 889999999999999
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
|.++++++.+++.+|++|+.||+|++||++++.....+..|...|.+++|+|++++|++++. |+.|++||+++++.
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~~~~~~ 274 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDLRADRE 274 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEE
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEECCCCcE
Confidence 99999998888899999999999999999999988899999999999999999999999986 89999999999887
Q ss_pred eEEEeccc-CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEE
Q 001184 580 KRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1130)
Q Consensus 580 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~i 658 (1130)
+..+..+. ...+.+++|+|+++++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++|+.|+.|++
T Consensus 275 ~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 275 VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSWDHTLRV 352 (354)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEETTSEEEE
T ss_pred EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcCCCCEEe
Confidence 77766432 23578899999999999999999999999999998888876554 8999999999999999999999999
Q ss_pred EE
Q 001184 659 LA 660 (1130)
Q Consensus 659 w~ 660 (1130)
|+
T Consensus 353 W~ 354 (354)
T 2pbi_B 353 WA 354 (354)
T ss_dssp EC
T ss_pred cC
Confidence 95
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-38 Score=352.17 Aligned_cols=297 Identities=20% Similarity=0.268 Sum_probs=257.3
Q ss_pred eec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 342 CTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 342 ~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
.++ +|.+.|++++|+|++..+|++|+.|++|++||+.+...... .+...+.+|...|.+++|+||
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~~s~d 76 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCTLTAD 76 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEEECTT
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEEECCC
Confidence 344 59999999999998755799999999999999875432210 112257899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCE
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPV 500 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v 500 (1130)
|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||.++.++..+.+|...|
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v 151 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQCLATLLGHNDWV 151 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSCEEEEECCCSSCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeccCCcE
Confidence 9999999999999999999987554 6789999999999999999 8999999999999998889999999999999
Q ss_pred EEEeecccC----CccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 501 YSVCPHQKE----NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 501 ~~~~~~~~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
.++++.|.. ++..+++++.|+.|++||++.......+..|...|.+++|+|+|++|++++. |+.|++||+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~~ 227 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLAA 227 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETTT
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCC
Confidence 999998743 4568999999999999999998888888999999999999999999999986 89999999999
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc------CCCCCcceEEEcCCCCEEEEE
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE------GGLPSLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~~~i~~v~~s~~~~~l~~~ 650 (1130)
++.+..+..+ ..+.+++|+|++.++++++.+ .+++|++..+..+..+..+ .+...+.+++|+|+|++|++|
T Consensus 228 ~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg 304 (319)
T 3frx_A 228 KKAMYTLSAQ--DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304 (319)
T ss_dssp TEEEEEEECC--SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred CcEEEEecCC--CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe
Confidence 9999888764 369999999999998888754 5999999988777766432 123467899999999999999
Q ss_pred eCCCcEEEEEcCCC
Q 001184 651 TADQGIKILANADG 664 (1130)
Q Consensus 651 ~~dg~i~iw~~~~~ 664 (1130)
+.||.|++|++.++
T Consensus 305 ~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 305 YTDNVIRVWQVMTA 318 (319)
T ss_dssp ETTSCEEEEEEEEC
T ss_pred ecCceEEEEEEeec
Confidence 99999999998654
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5e-38 Score=345.74 Aligned_cols=288 Identities=17% Similarity=0.281 Sum_probs=251.0
Q ss_pred eec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC
Q 001184 342 CTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1130)
Q Consensus 342 ~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 420 (1130)
+++ +|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+. .+.+|...|.+++|+|+
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~-------------------~~~~~~~~v~~~~~~~~ 66 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVR-------------------SIQVTETPVRAGKFIAR 66 (304)
T ss_dssp EEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGG
T ss_pred EeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeE-------------------EeeccCCcEEEEEEeCC
Confidence 344 5999999999999998 59999999999999999988765 46789999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC-CeeeEecCCCc
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKLFQFEGHEA 498 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~-~~~~~~~~h~~ 498 (1130)
+++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++|+.|++|++|| .++ .....+.+|..
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~ 141 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred CCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence 9999999999999999999987654 6789999999999999999 899999999999999 555 45577889999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec-CCCccEEEEEEec--CCCeEEEeeecCCCCcEEEEeeCC
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
.|.+++|+|. ++..|++|+.|++|++||++.......+. .+...+..+.|+| ++.+|++++. ++.|++||++
T Consensus 142 ~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~~ 216 (304)
T 2ynn_A 142 FVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQ 216 (304)
T ss_dssp CEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEETT
T ss_pred cEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeCC
Confidence 9999999863 44799999999999999998877666554 4556789999986 7789999986 9999999999
Q ss_pred CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC--EEEEEeCC
Q 001184 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN--LLVVTTAD 653 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~--~l~~~~~d 653 (1130)
+++++..+.+|.. .+.+++|+|++++|++|+.||.|++||+.+++.+..+..+.. .+.+++|+|++. ++++|+.|
T Consensus 217 ~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg~~~ 293 (304)
T 2ynn_A 217 TKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFDN 293 (304)
T ss_dssp TTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEEETT
T ss_pred CCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEecCC
Confidence 9999999999876 899999999999999999999999999999999998876544 789999999875 57777665
Q ss_pred CcEEEEEcCC
Q 001184 654 QGIKILANAD 663 (1130)
Q Consensus 654 g~i~iw~~~~ 663 (1130)
| +.+|++..
T Consensus 294 g-~~~~~~~~ 302 (304)
T 2ynn_A 294 G-FTVLSLGN 302 (304)
T ss_dssp E-EEEEECC-
T ss_pred c-eEEEEecc
Confidence 5 66777654
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-38 Score=362.05 Aligned_cols=301 Identities=18% Similarity=0.271 Sum_probs=260.4
Q ss_pred cceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 338 RAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 338 ~~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
..+.+++ +|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++... .+.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEE
Confidence 3445555 5999999999999998 49999999999999999988765 4778999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCcc----ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee
Q 001184 417 WSPDGNFIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF 491 (1130)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~ 491 (1130)
|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++|| .+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999975421 1122357899999999999998654 699999999999999 8888887
Q ss_pred Ee-----cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-CcceeeecCCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 492 QF-----EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 492 ~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
.+ .+|...|.+++|++ .++.+|++|+.|++|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 77 68999999999975 3557999999999999999984 4566678889999999999999999999986
Q ss_pred CcEEEEeeCCCCceeEEEecccC------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec--cCCCCCcce
Q 001184 566 DSHLVEWNESEGALKRTYIGFRK------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA--EGGLPSLPR 637 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~i~~ 637 (1130)
|+.|++||+++++.+..+..+.. ..+.+++|+|+++++++|+.||.|++||...++.+..+.. .++...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 89999999999999888875432 1378999999999999999999999999999988877632 245558999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 638 LRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 638 v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++|+|+|.+|++|+.|++|++|++...
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999998765
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=343.32 Aligned_cols=293 Identities=16% Similarity=0.260 Sum_probs=258.5
Q ss_pred CeeeEecCCCcCEEEEeeccc--CCccEEEEEecCCcEEEEEccCCcce--eeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 488 RKLFQFEGHEAPVYSVCPHQK--ENIHFIFSTAVDGKIKAWLYDNVGSR--VDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
.....+.+|.+.|++++|++. .++.+|++|+.|++|++|+++..... ..+.+|...|.+++|++++.++++++.
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~-- 100 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL-- 100 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET--
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC--
Confidence 344566789999999999874 35679999999999999999876543 367889999999999999999999986
Q ss_pred CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCC
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~ 643 (1130)
|+.|++||+.+++.+..+..+.. .+.+++|+|+++++++++.||.|++|++.+++....+..+.. .+.+++|+|+
T Consensus 101 --D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~spd 175 (321)
T 3ow8_A 101 --DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSPD 175 (321)
T ss_dssp --TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECTT
T ss_pred --CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECCC
Confidence 99999999999999999887655 688899999999999999999999999999998888776654 7999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCc
Q 001184 644 GNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADS 723 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1130)
+++|++++.|+.|++||+.++. ...
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~-~~~------------------------------------------------------ 200 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGK-LLH------------------------------------------------------ 200 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTE-EEE------------------------------------------------------
T ss_pred CCEEEEEcCCCeEEEEECCCCc-EEE------------------------------------------------------
Confidence 9999999999999999986541 000
Q ss_pred cccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCC
Q 001184 724 AARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNP 803 (1130)
Q Consensus 724 ~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 803 (1130)
.+
T Consensus 201 ---------------------------------------------------------------------~~--------- 202 (321)
T 3ow8_A 201 ---------------------------------------------------------------------TL--------- 202 (321)
T ss_dssp ---------------------------------------------------------------------EE---------
T ss_pred ---------------------------------------------------------------------EE---------
Confidence 00
Q ss_pred CcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEE
Q 001184 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAF 882 (1130)
Q Consensus 804 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 882 (1130)
.+|...|.+++|+|++++|++++ |+.|++||+.+++....+.+|...|.+++|
T Consensus 203 --------------------------~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 256 (321)
T 3ow8_A 203 --------------------------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256 (321)
T ss_dssp --------------------------CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred --------------------------cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEE
Confidence 14677889999999999999998 899999999999999999999999999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECC
Q 001184 883 HPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1130)
Q Consensus 883 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~ 947 (1130)
+| ++.+|++|+.||+|++||+.+++++.++.+|.+.|.+++|+|++++|++++.|++|++||..
T Consensus 257 sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 257 CP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99 89999999999999999999999999999999999999999999999999999999999963
No 21
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.3e-38 Score=352.33 Aligned_cols=294 Identities=14% Similarity=0.140 Sum_probs=237.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeC------cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCG------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
.|...|++++|||||+ +||+|+. |+.|++|+..++....... ....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLC---------------TAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGC---------------SEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEe---------------cccCCCCCCEEEEEEc
Confidence 4999999999999998 6899987 6789999888776543211 1245788999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCcccee-eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCC
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQ-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h 496 (1130)
||+++| +++.||+|+|||+.+++.... .....+|.+.|++++|+|+++ +|++|+.|++|++|| .+++++..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 577899999999998765432 234568999999999999999 899999999999999 889999999999
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee--cCCCccEEEEEEecCC-CeEEEeeecCCCCcEEEEee
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWN 573 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd 573 (1130)
...|.+++|++..+ .++++++.|++|++||+++.+....+ ..+...+.+++|+|++ .+|++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999976543 47899999999999999988766544 3455679999999985 56667765 89999999
Q ss_pred CCCCceeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CCCEEEEEe
Q 001184 574 ESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLVVTT 651 (1130)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~~~ 651 (1130)
+++++.++.+.+|.. .|.+++|+|++ ++|++|+.|++|+|||+++++.+..+ +|...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999998766 89999999987 57899999999999999999887665 3445899999998 899999999
Q ss_pred CCCcEEEEEcCCCch
Q 001184 652 ADQGIKILANADGLR 666 (1130)
Q Consensus 652 ~dg~i~iw~~~~~~~ 666 (1130)
.||.|++|++....+
T Consensus 332 ~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 332 WDHKVLHHHLPSEGR 346 (357)
T ss_dssp TTSCEEEEECC----
T ss_pred CCCeEEEEECCCCCc
Confidence 999999999976533
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=346.11 Aligned_cols=300 Identities=17% Similarity=0.263 Sum_probs=247.0
Q ss_pred eeeec-cCCC-CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 340 VACTM-HQGS-SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 340 ~~~~~-~h~~-~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
++..+ +|.. .|++++|+|+|+ +||+|+.|++|+|||+.+++.... .....+|...|.+++|
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~~ 69 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVAW 69 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEEE
T ss_pred EeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEEE
Confidence 44444 4877 999999999998 599999999999999987764321 1134689999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC---CeeeEe
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RKLFQF 493 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~---~~~~~~ 493 (1130)
+|||++||+|+.|++|++||+..+. ......+.+|...|.+++|+|+++ +|++|+.|++|++|| .++ .++..+
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence 9999999999999999999998764 223446889999999999999999 899999999999999 444 345678
Q ss_pred cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc--eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
.+|...|.+++|+|+ +.+|++++.|++|++||.+.... ...+..|...|.+++|+|+|++|++++. |+.|++
T Consensus 147 ~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~i 220 (345)
T 3fm0_A 147 NSHTQDVKHVVWHPS--QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVRI 220 (345)
T ss_dssp CCCCSCEEEEEECSS--SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEE
T ss_pred cCcCCCeEEEEECCC--CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEEE
Confidence 899999999999764 57999999999999999987653 3577889999999999999999999986 899999
Q ss_pred eeCCCC---------------ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----eeEE---Eecc
Q 001184 572 WNESEG---------------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN----MLTS---TEAE 629 (1130)
Q Consensus 572 wd~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~---~~~~ 629 (1130)
||.... +++..+.+.+...+..++|+|++..+++++.|+.|++|+...+. .... ....
T Consensus 221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 300 (345)
T 3fm0_A 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ 300 (345)
T ss_dssp EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETT
T ss_pred eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecc
Confidence 996321 23455666556689999999999999999999999999987643 1111 1123
Q ss_pred CCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCCc
Q 001184 630 GGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 630 ~~~~~i~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
+|...|.+++|+|++ .+|++++.||.|++|++.++.
T Consensus 301 ~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 455689999999987 599999999999999998774
No 23
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=345.13 Aligned_cols=297 Identities=13% Similarity=0.133 Sum_probs=238.1
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeecccccc-ceeeeeecCCCccEEEEEEcCCCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSM-MLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.|...|.+++|||||+ +|++++ |+++++||.... +|+...... .........|...|.+++|+||+ .
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 3677899999999998 577777 778899974211 111000000 00011233466789999999985 6
Q ss_pred EEEEeCCCeEEEEEecCCccceee-eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQS-LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~ 501 (1130)
|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++|| .+++++..+.+|...|.
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 889999999999999998765432 34568999999999999999 899999999999999 88999999999999999
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeec--CCCccEEEEEEecCC-CeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
+++|++... .+|++++.|++|++||+++.+....+. .+...+.+++|+|++ +++++++. ++.|++||+++++
T Consensus 174 ~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 174 CVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTS 248 (344)
T ss_dssp EEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--
T ss_pred EEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCc
Confidence 999976543 588999999999999999988777654 345579999999954 56777765 8999999999999
Q ss_pred eeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC-EEEEEeCCCcE
Q 001184 579 LKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGI 656 (1130)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~~~~dg~i 656 (1130)
.+..+.+|.. .|.+++|+|++ ++|++|+.|++|+|||+.+++++. +. +|...|++++|+|+++ +|++++.|++|
T Consensus 249 ~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 249 CVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred EEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 9999999876 89999999998 578999999999999999987654 33 4455899999999875 67799999999
Q ss_pred EEEEcCCC
Q 001184 657 KILANADG 664 (1130)
Q Consensus 657 ~iw~~~~~ 664 (1130)
++|++.+.
T Consensus 325 ~~w~v~~~ 332 (344)
T 4gqb_B 325 VHHVVPTE 332 (344)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99999765
No 24
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-37 Score=356.22 Aligned_cols=286 Identities=18% Similarity=0.319 Sum_probs=258.4
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|.+.|++++|+|++++||+|+.||+|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++|
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLW 177 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEE
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 366999999999999999999999999999999999987654 6889999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
| .+++++..+.+|...|.+++|+| ++.+|++++.|++|++||++++.....+..|...|.++.++|+++++++++.
T Consensus 178 d~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~- 254 (410)
T 1vyh_C 178 DFQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN- 254 (410)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred eCCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC-
Confidence 9 78889999999999999999976 4579999999999999999999998899999999999999999999999986
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCC--------------------CCEEEEEeCCCcEEEEeCCCCce
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT--------------------RNRILAAGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~vwd~~~~~~ 622 (1130)
++.|++||+.+++....+.+|.. .+.+++|+|+ +.++++|+.|+.|++||+.++++
T Consensus 255 ---D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~ 330 (410)
T 1vyh_C 255 ---DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330 (410)
T ss_dssp ---TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred ---CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce
Confidence 89999999999999999988766 8999999996 67899999999999999999999
Q ss_pred eEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccccccc
Q 001184 623 LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSK 702 (1130)
Q Consensus 623 ~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 702 (1130)
+..+..|.. .|.+++|+|++++|++++.|+.|++||+.++. ....+
T Consensus 331 ~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~-~~~~~------------------------------- 376 (410)
T 1vyh_C 331 LMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTL------------------------------- 376 (410)
T ss_dssp EEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSC-CCEEE-------------------------------
T ss_pred EEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eEEEE-------------------------------
Confidence 988876654 79999999999999999999999999986541 11100
Q ss_pred ccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeE
Q 001184 703 AERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGI 782 (1130)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 782 (1130)
.+|...|.+++|+|++..+
T Consensus 377 -------------------------------------------------------------~~h~~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 377 -------------------------------------------------------------NAHEHFVTSLDFHKTAPYV 395 (410)
T ss_dssp -------------------------------------------------------------ECCSSCEEEEEECSSSSCE
T ss_pred -------------------------------------------------------------cCCCCcEEEEEEcCCCCEE
Confidence 1277889999999999999
Q ss_pred EEeeeCCeEEeeec
Q 001184 783 LALWSNGVQKLWKW 796 (1130)
Q Consensus 783 ~~~~~dg~i~iw~~ 796 (1130)
++++.|+.|++|++
T Consensus 396 ~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 396 VTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEETTSEEEEEC-
T ss_pred EEEeCCCcEEEEeC
Confidence 99999999999974
No 25
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.3e-37 Score=341.60 Aligned_cols=286 Identities=14% Similarity=0.230 Sum_probs=254.7
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|.+.|.+++|+||+++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999887554 5788999999999999999 89999999999999
Q ss_pred e-cCC----CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEE
Q 001184 484 D-LSG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 484 d-~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
| .++ .....+.+|.+.|.++.|.+. ..+++++.|++|++||++++.....+..|...|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9 443 345678899999999999653 35899999999999999999988899999999999999999999999
Q ss_pred eeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
++. ++.|++||++++..+..+.+|.. .+.+++|+|++++|++|+.||.|++||+.+++.+..+........|.++
T Consensus 202 g~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 202 GAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EeC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 986 89999999999999999998766 8999999999999999999999999999999888877665555579999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccc
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~ 718 (1130)
+|+|++++|++|+.|+.|++||+.++. ....
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~------------------------------------------------ 307 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKAD-RAGV------------------------------------------------ 307 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCC-EEEE------------------------------------------------
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCc-EeeE------------------------------------------------
Confidence 999999999999999999999986541 1000
Q ss_pred cCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeee
Q 001184 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1130)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1130)
+ .+|...|.+++|+|+|..|++++.|+.|++|+
T Consensus 308 -----------------------------------------~---~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 308 -----------------------------------------L---AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----------------------------------------E---ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -----------------------------------------e---ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 0 23788999999999999999999999999995
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.9e-37 Score=347.45 Aligned_cols=311 Identities=16% Similarity=0.199 Sum_probs=230.7
Q ss_pred ccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeC------CeEEeeecCCCCCCCCc
Q 001184 732 RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN------GVQKLWKWNRTEQNPSG 805 (1130)
Q Consensus 732 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d------g~i~iw~~~~~~~~~~~ 805 (1130)
++.++.+.....|++.... ...|...|.+++|+|||++|++++.+ +.+++|+.
T Consensus 19 ~~~~~g~~~~~~w~~p~~~------------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~--------- 77 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTA------------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD--------- 77 (357)
T ss_dssp ---------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS---------
T ss_pred EEecCCCccccccCCCCCC------------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC---------
Confidence 3444445677888765321 13488999999999999999999874 45555543
Q ss_pred ccccccccccccCCCCcceeccC--CCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEE----EEeCCCCCeEE
Q 001184 806 KATAAVAPQHWQPSNGLLMTNDV--PENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMT----TFMSPPPASTF 879 (1130)
Q Consensus 806 ~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~ 879 (1130)
.++....... ..+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++
T Consensus 78 -------------~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~ 144 (357)
T 4g56_B 78 -------------PEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKT 144 (357)
T ss_dssp -------------CC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred -------------CCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence 3332111111 1157888999999999988877779999999998876543 34478999999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCC-eEEEEeCCCcEEEEECCCCcccceeeEe
Q 001184 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQ 958 (1130)
Q Consensus 880 l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~i~vwd~~~~~~~~~~~~~ 958 (1130)
++|+| ++++|++|+.||+|++||+.+++++..+.+|...|++++|+|++. ++++++.|++|++||+.+++.....
T Consensus 145 v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~--- 220 (357)
T 4g56_B 145 LSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI--- 220 (357)
T ss_dssp EEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---
T ss_pred EEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---
Confidence 99999 899999999999999999999999999999999999999999985 7899999999999999986643322
Q ss_pred ccCCCCCCCeEEEEEcCCC-cEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCC-CEEEEEeCCCcEEE
Q 001184 959 LPAGKLPVGETRVQFHSDQ-VRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNS-QLIYATFTDGSIGV 1035 (1130)
Q Consensus 959 ~~~~~~~~~v~~~~~s~d~-~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~t~~~Dg~i~v 1035 (1130)
....+...+.+++|+|++ .+|++ +.|+.|++||+.+++.+..+..+ ...|++++|+|++ ++||+|+.||+|+|
T Consensus 221 -~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 221 -DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH---SQNITGLAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp -CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC---SSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred -eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc---ceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 222334678999999985 56666 57899999999999998888766 7899999999997 58999999999999
Q ss_pred EeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1036 FDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1036 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
||+.+++.+..+. |...+.+++|+|.++.+|++|+.||+|++|++.+..
T Consensus 297 wd~~~~~~~~~~~------------H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 297 LDADFSEVFRDLS------------HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ECTTSCEEEEECC------------CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EECCCCcEeEECC------------CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999998765442 334567899999888999999999999999997654
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.8e-37 Score=341.64 Aligned_cols=295 Identities=14% Similarity=0.168 Sum_probs=230.0
Q ss_pred CccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceec--cCCCCCCCceeEEEEec
Q 001184 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN--DVPENAEDVVPCVALSK 843 (1130)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~i~~l~~s~ 843 (1130)
+...|.+++|+|||+.|++++ |+++++|+.... .|+......... .....+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 667799999999999877665 778888863211 111000000000 00002467899999999
Q ss_pred CCCEEEEEeCCeEEEEECCCceeEEE----EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCC
Q 001184 844 NDSYVMSAGGGKVSLFNMMNFKVMTT----FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH 919 (1130)
Q Consensus 844 dg~~la~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 919 (1130)
|+.+++.+.||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 97555444499999999998876544 448999999999999 8999999999999999999999999999999999
Q ss_pred eeEEEEccCCC-eEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCC-CcEEEE-EcCCcEEEEECCCc
Q 001184 920 ITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD-QVRLLV-NHETQLAIYDGSKM 996 (1130)
Q Consensus 920 V~~l~~s~dg~-~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~-~~d~~i~v~d~~~~ 996 (1130)
|++++|+|++. +|++++.|++|++||+.+++..... ....+...+.+++|+|+ +.++++ +.|+.|++||+.++
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~ 247 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI----GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST 247 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC----C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeeee----ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence 99999999985 7899999999999999987653322 22223357899999995 456666 57999999999999
Q ss_pred eeeeeeecCCCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCC
Q 001184 997 ECIRQWVPQDVLSSPISSAAYSCNS-QLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEP 1075 (1130)
Q Consensus 997 ~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1130)
+++..+.+| ...|++++|+||| ++|++|+.|++|+|||+.++++.. +. +|...+.+++|+|++.
T Consensus 248 ~~~~~~~~h---~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-----------~H~~~V~~v~~sp~~~ 312 (344)
T 4gqb_B 248 SCVLSSAVH---SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-----------AHRDFVRDATWSPLNH 312 (344)
T ss_dssp -CCEEEECC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-----------CCSSCEEEEEECSSST
T ss_pred cEEEEEcCC---CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-----------CCCCCEEEEEEeCCCC
Confidence 999998877 7899999999998 589999999999999999987643 22 3445677899999877
Q ss_pred CEEEEEeCCCcEEEEeCCCCc
Q 001184 1076 NQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1076 ~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
.+|++|+.||+|++|++.++.
T Consensus 313 ~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TEEEEEETTSCEEEEECCC--
T ss_pred eEEEEEcCCCeEEEEECCCCC
Confidence 789999999999999998765
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-36 Score=351.05 Aligned_cols=243 Identities=17% Similarity=0.239 Sum_probs=190.5
Q ss_pred cCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEEe----cCCccc---eeeeeeec----------CCCCeeEEEEecCCC
Q 001184 406 KDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTY----QGSNDL---CQSLEIDA----------HVGGVNDLAFSYPNK 467 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~-~las~~~d~~i~vwd~----~~~~~~---~~~~~~~~----------h~~~V~~i~~s~d~~ 467 (1130)
..|.+.|.+++|+|+|+ +||+|+.|+.|++||+ .+++.+ .....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45668999999999999 9999999999999999 887620 01112222 688999999999999
Q ss_pred ceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCcc----
Q 001184 468 QLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW---- 543 (1130)
Q Consensus 468 ~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---- 543 (1130)
+|++++.|+.|++||.+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 122 --SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp --EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred --EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 89999999999999988999999999999999999965 5579999999999999999998888877777666
Q ss_pred -----------EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcE
Q 001184 544 -----------CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQI 612 (1130)
Q Consensus 544 -----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 612 (1130)
+.+++|++++. +++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.||.|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTL 271 (425)
T ss_dssp --------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSCE
T ss_pred eeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCEE
Confidence 89999999865 556654 89999999999999999887665 89999999999999999999999
Q ss_pred EEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 613 ~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
++||+.+++.+..+..+.. .+.+++|+|++ ++++++.|+.|++||+
T Consensus 272 ~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 272 RIWHGGNGNSQNCFYGHSQ--SIVSASWVGDD-KVISCSMDGSVRLWSL 317 (425)
T ss_dssp EEECSSSBSCSEEECCCSS--CEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred EEEECCCCccceEecCCCc--cEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence 9999987755544433222 44555555544 4455555555555544
No 29
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.6e-36 Score=329.66 Aligned_cols=286 Identities=20% Similarity=0.309 Sum_probs=253.2
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.+|...|++++|+|+|+ +|++|+.||.|+||++.+++... .+.+|...|.+++|+|++++
T Consensus 20 ~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 79 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDSNL 79 (312)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred cccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCCCE
Confidence 36999999999999998 59999999999999999887664 46799999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++|| .+++.+..+..|..+|.+
T Consensus 80 l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 154 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154 (312)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEE
Confidence 9999999999999999987554 6789999999999999999 899999999999999 888999999999999999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeec-CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
++|++ ++.++++++.||.|++||+++.+....+. .+...+..++|+|++++|++++. ++.|++||+.+++.+.
T Consensus 155 ~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 155 VHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLK 228 (312)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTEEEE
T ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCcEEE
Confidence 99965 55799999999999999999887766554 45567999999999999999986 8999999999999999
Q ss_pred EEecccCce--eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEe--CCCcEE
Q 001184 582 TYIGFRKKS--AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT--ADQGIK 657 (1130)
Q Consensus 582 ~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~--~dg~i~ 657 (1130)
.+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++ .|+.|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~~d~~i~ 306 (312)
T 4ery_A 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALENDKTIK 306 (312)
T ss_dssp EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECTTTCCEE
T ss_pred EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEccCCccEE
Confidence 998876532 22233446788999999999999999999999988876654 799999999999999997 699999
Q ss_pred EEEcC
Q 001184 658 ILANA 662 (1130)
Q Consensus 658 iw~~~ 662 (1130)
+|+.+
T Consensus 307 ~W~~d 311 (312)
T 4ery_A 307 LWKSD 311 (312)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 99863
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1e-35 Score=334.71 Aligned_cols=297 Identities=13% Similarity=0.207 Sum_probs=254.6
Q ss_pred ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
+..+.+.+|.. .|.+++|+|++++|++|+.||.|++||..+++....+..+.. .|.+++|+|++.++++++.|+.++
T Consensus 55 ~~~~~l~gH~~-~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~--~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHGN-KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT--WVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS--CCCEEEECTTSSEEEEESTTSEEE
T ss_pred EEEEEecCCCC-eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCC--CEEEEEECCCCCEEEEeeCCCCEE
Confidence 45677888776 899999999999999999999999999999998888876654 799999999999999999999999
Q ss_pred EEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccccccc
Q 001184 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDI 737 (1130)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1130)
+|++......
T Consensus 132 v~~~~~~~~~---------------------------------------------------------------------- 141 (354)
T 2pbi_B 132 VYPLTFDKNE---------------------------------------------------------------------- 141 (354)
T ss_dssp EEECCCCTTC----------------------------------------------------------------------
T ss_pred EEEEeccccc----------------------------------------------------------------------
Confidence 9997543100
Q ss_pred CCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccccccc
Q 001184 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQ 817 (1130)
Q Consensus 738 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 817 (1130)
+ ...... .+
T Consensus 142 -~--------------------------~~~~~~------------------~~-------------------------- 150 (354)
T 2pbi_B 142 -N--------------------------MAAKKK------------------SV-------------------------- 150 (354)
T ss_dssp -C--------------------------SGGGCE------------------EE--------------------------
T ss_pred -c--------------------------ccccce------------------ee--------------------------
Confidence 0 000000 00
Q ss_pred CCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCC-CCcEEEEEeC
Q 001184 818 PSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ-DNNIIAIGME 895 (1130)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~-~~~~lasg~~ 895 (1130)
.+|...|.+++|+|++..|++++ |++|++||+.+++++..+.+|...|.+++|+|. ++.+|++|+.
T Consensus 151 ------------~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 151 ------------AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp ------------EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred ------------eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 03778899999999999999998 899999999999999999999999999999884 4689999999
Q ss_pred CCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC
Q 001184 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 896 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
||+|++||+.+++++..+.+|...|++++|+|++.+|++++.|++|++||+..++... ..........+.+++|+|
T Consensus 219 Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~----~~~~~~~~~~~~~~~~s~ 294 (354)
T 2pbi_B 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA----IYSKESIIFGASSVDFSL 294 (354)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----EECCTTCCSCEEEEEECT
T ss_pred CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE----EEcCCCcccceeEEEEeC
Confidence 9999999999999999999999999999999999999999999999999998754321 111222235789999999
Q ss_pred CCcEEEE-EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 001184 976 DQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 976 d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd 1037 (1130)
++.+|++ +.|+.|++||+.+++.+..+.+| ...|++++|+|||++|++|+.||+|+||+
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h---~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGSRVSILFGH---ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEEEEECCC---SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEECC---CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999998 56999999999999988888766 78999999999999999999999999996
No 31
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.2e-36 Score=336.90 Aligned_cols=298 Identities=19% Similarity=0.274 Sum_probs=243.6
Q ss_pred eeec-cCCCCEEEEEE-----ec-CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEE
Q 001184 341 ACTM-HQGSSVVSMDF-----HP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS 413 (1130)
Q Consensus 341 ~~~~-~h~~~V~~v~f-----sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 413 (1130)
...+ +|.+.|++++| +| +++ +|++|+.|++|+|||+.+++.... .......+.+|...|.
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~ 80 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVS 80 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceE
Confidence 3344 59999999999 77 887 699999999999999976543210 0012235789999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEe
Q 001184 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF 493 (1130)
Q Consensus 414 ~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~ 493 (1130)
+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||..+......
T Consensus 81 ~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~~~~~ 155 (343)
T 2xzm_R 81 DLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGECKFSS 155 (343)
T ss_dssp EEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCEEEEC
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCceeee
Confidence 99999999999999999999999999987554 6789999999999999999 899999999999999656665554
Q ss_pred c---CCCcCEEEEeecccCC--------ccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 494 E---GHEAPVYSVCPHQKEN--------IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 494 ~---~h~~~v~~~~~~~~~~--------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
. +|...|.+++|+|... +.++++++.|+.|++||. .......+..|...|.+++|+|+|++|++++.
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~- 233 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK- 233 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC-
Confidence 4 7999999999987542 268999999999999994 45556677888999999999999999999986
Q ss_pred CCCCcEEEEeeCC-CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeE--EEec---------cC
Q 001184 563 KEGDSHLVEWNES-EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLT--STEA---------EG 630 (1130)
Q Consensus 563 ~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~---------~~ 630 (1130)
++.|++||+. .......+.. ...+.+++|+|++.++++ +.|+.|++||+.+++... .+.. .+
T Consensus 234 ---dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 234 ---DKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp ---TCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred ---CCeEEEEECCCCcccceeecC--CCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 9999999994 4444555532 236999999999987764 567889999998876544 3321 13
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 631 GLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 631 ~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 308 ~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 308 KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 4457899999999999999999999999998765
No 32
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-36 Score=345.40 Aligned_cols=320 Identities=13% Similarity=0.164 Sum_probs=264.0
Q ss_pred EEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEE
Q 001184 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1130)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l 647 (1130)
.+..|+..+..+.+.+.+|.. .|.+++|+|++++|++|+.||+|++||+.+++....+..+.. .|.+++|+|++++|
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~-~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSG-KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP--WVMECAFAPNGQSV 123 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT--TCCCCEECTTSSEE
T ss_pred cccccccceeEEeeccccccc-EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC--CEEEEEECCCCCEE
Confidence 345677777888889999876 899999999999999999999999999999999988887654 79999999999999
Q ss_pred EEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccC
Q 001184 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1130)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1130)
++++.|+.+++|++...... +
T Consensus 124 as~~~d~~v~iw~~~~~~~~-------------------------------~---------------------------- 144 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADR-------------------------------D---------------------------- 144 (380)
T ss_dssp EECCSSSCCEEEECCCCSSC-------------------------------C----------------------------
T ss_pred EEeeCCCcEEEEECCCCccc-------------------------------c----------------------------
Confidence 99999999999998653100 0
Q ss_pred CCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccc
Q 001184 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1130)
Q Consensus 728 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1130)
+...+
T Consensus 145 -----------~~~~~---------------------------------------------------------------- 149 (380)
T 3iz6_a 145 -----------GNMPV---------------------------------------------------------------- 149 (380)
T ss_dssp -----------CSSTT----------------------------------------------------------------
T ss_pred -----------CCccc----------------------------------------------------------------
Confidence 00000
Q ss_pred ccccccccccCCCCcceeccCCCCCCCceeEEEEecCC-CEEEEEe-CCeEEEEECCCceeEEEE-----eCCCCCeEEE
Q 001184 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND-SYVMSAG-GGKVSLFNMMNFKVMTTF-----MSPPPASTFL 880 (1130)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg-~~la~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l 880 (1130)
.....+|...+.+++|+|++ ..|++++ |++|++||+.+++.+..+ .+|...|.++
T Consensus 150 ------------------~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 150 ------------------SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp ------------------CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred ------------------eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 00112577788888888864 5688887 899999999999998887 5788999999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEee-cCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEec
Q 001184 881 AFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959 (1130)
Q Consensus 881 ~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~ 959 (1130)
+|++.++.+|++|+.||+|++||+. .++.+..+.+|.+.|++++|+|++++|++++.|++|++||+.+++.........
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~ 291 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence 9987678999999999999999998 557888999999999999999999999999999999999999876543322111
Q ss_pred cC-CCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecC-CCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 001184 960 PA-GKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQ-DVLSSPISSAAYSCNSQLIYATFTDGSIGVF 1036 (1130)
Q Consensus 960 ~~-~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~-~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vw 1036 (1130)
.. ......+.+++|+|+|.+|+++ .|+.|++||+.+++.+..+... .+|...|++++|+|||++|++|+.||+|+||
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 11 1112358899999999999985 6999999999999888776322 3568999999999999999999999999999
Q ss_pred eCCCcc
Q 001184 1037 DADSLR 1042 (1130)
Q Consensus 1037 d~~~~~ 1042 (1130)
++...+
T Consensus 372 ~~~~~~ 377 (380)
T 3iz6_a 372 AFSGHR 377 (380)
T ss_dssp ECCSSS
T ss_pred ecCCCc
Confidence 998664
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-36 Score=350.36 Aligned_cols=304 Identities=15% Similarity=0.234 Sum_probs=247.4
Q ss_pred eeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeC----CCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 341 ACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDV----GLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 341 ~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
+....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++.+..... ...+.. .........+|.+.|++++
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELRH--PFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEEC--CCCCC------CBCEEEEE
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-cccccc--cccccccccCCCCceEEEE
Confidence 3334578999999999999845899999999999999 88773110000 000000 0000001234788999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecC
Q 001184 417 WSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG 495 (1130)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~ 495 (1130)
|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++.+..+..
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeec
Confidence 999999999999999999999 4444333 5788999999999999999 899999999999999 78888888888
Q ss_pred CCcC---------------EEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 496 HEAP---------------VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 496 h~~~---------------v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
+... +.+++|++. ..+++++.||.|++||++.......+..+...|.+++|+|++++|++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp C---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred cccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 8777 888988764 4689999999999999999888888888999999999999999999998
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1130)
. ++.|++||+.+++.+..+.+|.. .+.+++|+|++ ++++++.|+.|++||+.+++.+..+..+.. .+.+++|
T Consensus 267 ~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~ 338 (425)
T 1r5m_A 267 D----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRI 338 (425)
T ss_dssp T----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEE
T ss_pred C----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEE
Confidence 6 89999999999999999987665 89999999999 999999999999999999999888876554 7999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 641 NKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|++++|++++.||.|++|++.++
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHH
T ss_pred cCCCCEEEEEECCCeEEEEECCCC
Confidence 999999999999999999998765
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-36 Score=344.05 Aligned_cols=308 Identities=18% Similarity=0.284 Sum_probs=248.1
Q ss_pred ceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
++.+.++|...|+|++|||||+ +||+|+ ++.++||++.+++.+.......-. ..............+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEEC
Confidence 3455668999999999999998 588876 789999999998876421100000 0000000001112344569999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCC
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~ 497 (1130)
|||++||+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++|| .++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999876544 6789999999999999999 899999999999999 7777777775 66
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-------cCCCccEEEEEEecCCCeEEEeeecCCCCcEEE
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-------DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1130)
..+.+++|++ .++.+|++++.|+.|++||++++.....+ ..|...|.+++|+|+|++|++++. ++.|+
T Consensus 207 ~~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~ 281 (393)
T 1erj_A 207 DGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 281 (393)
T ss_dssp SCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred CCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEE
Confidence 7899999976 35689999999999999999987766555 467789999999999999999986 99999
Q ss_pred EeeCCCC------------ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 571 EWNESEG------------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 571 ~wd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
+||+.+. .+...+.+|.. .+.+++|+|++.+|++|+.|+.|++||..+++.+..+..|.. .|.++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v 358 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISV 358 (393)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEE
Confidence 9998753 34556777765 799999999999999999999999999999999988886654 79999
Q ss_pred EEcC------CCCEEEEEeCCCcEEEEEcCC
Q 001184 639 RFNK------EGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 639 ~~s~------~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+|++ ++++|++|+.||.|++|++..
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9876 688999999999999999754
No 35
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.3e-36 Score=329.56 Aligned_cols=248 Identities=18% Similarity=0.302 Sum_probs=224.4
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
++.+|.+.|.+++|+||+++||+|+.||+|++||+.++..+. .+.+|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEE
Confidence 588999999999999999999999999999999999987554 6788999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc-eeeecCCCccEEEEEEec-CCCeEEEee
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSA-DGSRLFSCG 560 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 560 (1130)
| .+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++... ...+..|...|.+++|+| ++.+|++++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9 88999999999999999999976 457999999999999999987744 456788999999999999 678999998
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
. |+.|++||+.++.....+..++...+..+.|+| +++++++|+.|+.|++||+.+++++..+..|.. .|.++
T Consensus 161 ~----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~ 234 (304)
T 2ynn_A 161 L----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFA 234 (304)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEE
T ss_pred C----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEE
Confidence 6 999999999988887777766655788888876 678999999999999999999999999887654 79999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|+|++.+|++++.||.|++||..++
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999999999998765
No 36
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-36 Score=332.79 Aligned_cols=294 Identities=15% Similarity=0.214 Sum_probs=230.4
Q ss_pred eeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeee-cC-CCccEEEEE
Q 001184 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV-KD-SSISVSRVA 416 (1130)
Q Consensus 340 ~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~V~~v~ 416 (1130)
++..+ +|.+.|++++|+|+ +||+|+.|++|+|||+.++..... ..+ .+ |...|.+++
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~v~ 65 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRSVA 65 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEEEE
T ss_pred cceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEEEE
Confidence 33444 59999999999997 599999999999999987532110 023 34 999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCc----cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEec-CC----
Q 001184 417 WSPDGNFIGVAFTKHLIHLYTYQGSN----DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SG---- 487 (1130)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~----~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~-~~---- 487 (1130)
|+|++++||+|+.|++|++||+.... .......+.+|.+.|.+++|+|+++ +|++|+.|++|++||. .+
T Consensus 66 ~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCC
T ss_pred ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCe
Confidence 99999999999999999999996432 1233446789999999999999999 8999999999999994 32
Q ss_pred CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC--cceeeecCCCccEEEEEEecC--CCeEEEeeecC
Q 001184 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSAD--GSRLFSCGTSK 563 (1130)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~ 563 (1130)
+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +.+|++++.
T Consensus 144 ~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-- 219 (330)
T 2hes_X 144 ECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-- 219 (330)
T ss_dssp EEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET--
T ss_pred EEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC--
Confidence 35678899999999999976 4579999999999999998766 456678889999999999998 678999886
Q ss_pred CCCcEEEEeeCCCC--------ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce--eEEEeccCCCC
Q 001184 564 EGDSHLVEWNESEG--------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM--LTSTEAEGGLP 633 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~ 633 (1130)
|+.|++||+.++ .....+.+.+...|.+++|++++ +|++++.||.|++||..+++. .... ...+..
T Consensus 220 --D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~ 295 (330)
T 2hes_X 220 --DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGV 295 (330)
T ss_dssp --TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTT
T ss_pred --CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccccc
Confidence 899999998754 33444555344589999999654 899999999999999987743 2222 223333
Q ss_pred -CcceEEEcC--CCCEEEEEeCCCcEEEEEcCC
Q 001184 634 -SLPRLRFNK--EGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 634 -~i~~v~~s~--~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
.|.+++|+| ++++|++++.||.|++|++..
T Consensus 296 ~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 296 YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 789999999 789999999999999999864
No 37
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.9e-34 Score=372.35 Aligned_cols=519 Identities=12% Similarity=0.073 Sum_probs=379.0
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
+...+.+.+|||+ + ||..+. +.|++|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 5568899999964 4 555554 689999999887542 668999999999999999999
Q ss_pred EEeCC------CeEEEEEecCCccceeeeeeecCCCCe-------eEEEEecCCCceEEEEEcCC------CcEEEEecC
Q 001184 426 VAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGV-------NDLAFSYPNKQLCIVTCGDD------KLIRVWDLS 486 (1130)
Q Consensus 426 s~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V-------~~i~~s~d~~~l~l~s~s~d------~~v~iwd~~ 486 (1130)
+++.+ ..|++||+.+++. ..+..|...+ .+++|+|||+ ++++++.+ ..|.+||..
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 3799999988752 2477888888 9999999998 67777754 357778855
Q ss_pred CCeeeEecCCCcCEEEEeecccCCccEEEEEec------------CCcEEEEEccCCcceeeecCCCccEEEEEEecCCC
Q 001184 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV------------DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS 554 (1130)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1130)
+.....+..+. ...++|++ | ++++++. +...++|..........+..+...+.++.|+++ .
T Consensus 143 ~g~~~~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 143 GINFVPLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp GTEEEECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E
T ss_pred CCCeEEecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E
Confidence 55555555443 34566765 5 7777753 345677765444555566788889999999988 4
Q ss_pred eEEEeeecCCCCcEEEEeeCCC-CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC---
Q 001184 555 RLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG--- 630 (1130)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--- 630 (1130)
.++++.. ++.+.+|.... +.....+..+. .+...+|+|+|++++.+. ++.|++|++..... ..+..+.
T Consensus 216 l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l-~~l~~~~~~~ 287 (1045)
T 1k32_A 216 IYFITDI----DGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI-EKIEIGDLES 287 (1045)
T ss_dssp EEEEECT----TSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE-EECCCCCCCB
T ss_pred EEEEEec----cCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEEe-CCEEEEecCCceEe-eeeccCcccc
Confidence 4444432 45556665432 33445555443 355679999999888874 89999999954433 3443321
Q ss_pred ------CCCCcceEEEc-CCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccc
Q 001184 631 ------GLPSLPRLRFN-KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1130)
Q Consensus 631 ------~~~~i~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1130)
+...+..++|+ |||+.|++++ ++.+.+|+...+.. .. +
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-~~-~-------------------------------- 332 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-LK-V-------------------------------- 332 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-EE-C--------------------------------
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-EE-c--------------------------------
Confidence 11258899999 9999999887 78899998765410 00 0
Q ss_pred cccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCcc-ceEEEEEeccCCeE
Q 001184 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSAS-KVARLLYTNSGIGI 782 (1130)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l 782 (1130)
..+.. .+..++|+ +|+.+
T Consensus 333 ------------------------------------------------------------~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 333 ------------------------------------------------------------PEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp ------------------------------------------------------------SCCSCEEEEEECSS-SEEEE
T ss_pred ------------------------------------------------------------cCCCcceEEeeeEc-CCCeE
Confidence 01333 67788999 99999
Q ss_pred EEeeeCCeEE-eeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEE
Q 001184 783 LALWSNGVQK-LWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFN 860 (1130)
Q Consensus 783 ~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd 860 (1130)
+.++.++.+. +|++.. +.... +. ++...+..++|||||++|++++ ++.|++||
T Consensus 352 ~~~s~~~~l~~~~d~~~----------------------~~~~~--l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRT----------------------GKAEK--FE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp EEEETTEEEEEEEETTT----------------------CCEEE--CC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEECCCceEEEEECCC----------------------CCceE--ec-CCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence 9888766666 665432 22221 22 4677899999999999999988 78999999
Q ss_pred CCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC----------cEEEEEeecCeEEEEEecCCCCeeEEEEccCCC
Q 001184 861 MMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS----------TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN 930 (1130)
Q Consensus 861 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 930 (1130)
+.+++....+..|...+.+++|+| |+++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||+
T Consensus 407 ~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~ 484 (1045)
T 1k32_A 407 LETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK 484 (1045)
T ss_dssp TTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred CCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence 999998888878889999999999 888888877644 89999999988 677888989999999999999
Q ss_pred eEEEEeCCCcEEEEECCCCcccce---------------------------------------eeEeccCCCCCCCeEEE
Q 001184 931 ILVSSGSDAQLIFWNTDTWEKRKS---------------------------------------IAIQLPAGKLPVGETRV 971 (1130)
Q Consensus 931 ~L~s~s~Dg~i~vwd~~~~~~~~~---------------------------------------~~~~~~~~~~~~~v~~~ 971 (1130)
+|++++.++...+|+......... ...... .+...+..+
T Consensus 485 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~--~~~~~~~~~ 562 (1045)
T 1k32_A 485 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN--VDPGDYRMI 562 (1045)
T ss_dssp EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECS--CCCBCEEEE
T ss_pred EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcC--CCCCChhhe
Confidence 999999988888887543221000 000000 122567899
Q ss_pred EEcCCCcEEEE--------------EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 001184 972 QFHSDQVRLLV--------------NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 972 ~~s~d~~~l~~--------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd 1037 (1130)
+++|||.++++ .....+.+||+.+++..... ..+.+++|||||++|++++.| .|++||
T Consensus 563 ~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~v~~~~~S~DG~~l~~~~~~-~i~~~d 634 (1045)
T 1k32_A 563 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NNLTDLRLSADRKTVMVRKDD-GKIYTF 634 (1045)
T ss_dssp EECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EEEEEEEECTTSCEEEEEETT-SCEEEE
T ss_pred EEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cCcceEEECCCCCEEEEEcCC-cEEEEe
Confidence 99999997774 12457889999888754332 368899999999999999866 899999
Q ss_pred CCCcc
Q 001184 1038 ADSLR 1042 (1130)
Q Consensus 1038 ~~~~~ 1042 (1130)
+.+++
T Consensus 635 ~~~~~ 639 (1045)
T 1k32_A 635 PLEKP 639 (1045)
T ss_dssp ESSCT
T ss_pred CccCc
Confidence 98887
No 38
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-35 Score=332.41 Aligned_cols=301 Identities=22% Similarity=0.287 Sum_probs=256.3
Q ss_pred ceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 339 AVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 339 ~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
.+..+| +|.+.|++|+|+|++..+||||+.||+|+|||+.+++.... .+...+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEEEE
Confidence 344455 59999999999998544799999999999999987654321 122257899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC--eeeEecC
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR--KLFQFEG 495 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~--~~~~~~~ 495 (1130)
+|||++|++++.|+.|++|+...+.... ....+...+..+.+++++. .+++++.|+.+++||..+. ....+.+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999998876443 4567888899999999999 7999999999999994333 3345668
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
|...+..++|.+.....++++++.|+.|++||+++......+..|...|.+++|+|++++|++++. |+.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999998887789999999999999999999999899999999999999999999999986 8999999999
Q ss_pred CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec-------cCCCCCcceEEEcCCCCEEE
Q 001184 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA-------EGGLPSLPRLRFNKEGNLLV 648 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~~~i~~v~~s~~~~~l~ 648 (1130)
+++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+.. ..+...|.+++|+|++++|+
T Consensus 246 ~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 246 EGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322 (340)
T ss_dssp TTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred cCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence 999998888643 689999999875 55667799999999999887766543 24556899999999999999
Q ss_pred EEeCCCcEEEEEcCCCc
Q 001184 649 VTTADQGIKILANADGL 665 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~~~ 665 (1130)
+|+.||.|+||++.+|.
T Consensus 323 sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 323 AGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTSCEEEEEEEC--
T ss_pred EEeCCCEEEEEeCCCcC
Confidence 99999999999998873
No 39
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=328.13 Aligned_cols=312 Identities=14% Similarity=0.193 Sum_probs=244.7
Q ss_pred ceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEE-eccCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST-EAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i 656 (1130)
+++..+.+|....+.+++|+|++++|++|+.|+.|++||+.++...... ...++...|.+++|+|++++|++++.|+.+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 4567788887768999999999999999999999999999888654332 224556689999999999999999999999
Q ss_pred EEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccc
Q 001184 657 KILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLED 736 (1130)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1130)
++|+...+...
T Consensus 86 ~iw~~~~~~~~--------------------------------------------------------------------- 96 (345)
T 3fm0_A 86 CIWKKNQDDFE--------------------------------------------------------------------- 96 (345)
T ss_dssp EEEEECCC-EE---------------------------------------------------------------------
T ss_pred EEEEccCCCeE---------------------------------------------------------------------
Confidence 99997543000
Q ss_pred cCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccc
Q 001184 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1130)
Q Consensus 737 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1130)
.+..
T Consensus 97 -----------------------------------------------------~~~~----------------------- 100 (345)
T 3fm0_A 97 -----------------------------------------------------CVTT----------------------- 100 (345)
T ss_dssp -----------------------------------------------------EEEE-----------------------
T ss_pred -----------------------------------------------------EEEE-----------------------
Confidence 0000
Q ss_pred cCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCc---eeEEEEeCCCCCeEEEEEeCCCCcEEEE
Q 001184 817 QPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF---KVMTTFMSPPPASTFLAFHPQDNNIIAI 892 (1130)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~sp~~~~~las 892 (1130)
..+|...|.+++|+|++++|++++ |++|++||+.++ +++..+.+|...|.+++|+| ++.+|++
T Consensus 101 ------------~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s 167 (345)
T 3fm0_A 101 ------------LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLAS 167 (345)
T ss_dssp ------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEE
T ss_pred ------------ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEE
Confidence 014778889999999999999888 889999998765 45667888999999999999 8899999
Q ss_pred EeCCCcEEEEEeecCe--EEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccc----------eeeEecc
Q 001184 893 GMEDSTIQIYNVRVDE--VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK----------SIAIQLP 960 (1130)
Q Consensus 893 g~~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~----------~~~~~~~ 960 (1130)
|+.|++|++||..+++ +...+.+|...|++++|+|+|++|++++.|++|++|+........ .......
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 9999999999999875 457889999999999999999999999999999999974322111 1112223
Q ss_pred CCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCceee----e--eeecCCCCCCCeEEEEECCCCC-EEEEEeCCCc
Q 001184 961 AGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECI----R--QWVPQDVLSSPISSAAYSCNSQ-LIYATFTDGS 1032 (1130)
Q Consensus 961 ~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~----~--~~~~~~~~~~~v~~v~~s~dg~-~l~t~~~Dg~ 1032 (1130)
.+.+...+.+++|+|++..|++ +.|+.+++|+...+... . ....+.+|...|++++|+|++. +||+|+.||+
T Consensus 248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE 327 (345)
T ss_dssp CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence 3335578999999999999888 67999999998754311 1 1122345689999999999984 9999999999
Q ss_pred EEEEeCCCccccccc
Q 001184 1033 IGVFDADSLRLRCRI 1047 (1130)
Q Consensus 1033 i~vwd~~~~~~~~~~ 1047 (1130)
|++|++.+++.....
T Consensus 328 v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 328 VAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEEECC-------
T ss_pred EEEEEecCCCCcccc
Confidence 999999988765443
No 40
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.3e-35 Score=326.78 Aligned_cols=247 Identities=20% Similarity=0.329 Sum_probs=218.6
Q ss_pred eecCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEEecCCcc--ceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 404 IVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGSND--LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg-~~las~~~d~~i~vwd~~~~~~--~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++||+.+... ......+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 688999999999999965 8999999999999999975432 123446889999999999999999 89999999999
Q ss_pred EEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecC------C
Q 001184 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD------G 553 (1130)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~------~ 553 (1130)
++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++. .....+..|...+.++.|.|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999 88999999999999999999965 557999999999999999964 566677888899999999985 4
Q ss_pred CeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCC
Q 001184 554 SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1130)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 633 (1130)
..+++++. ++.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+.
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--- 238 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD--- 238 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS---
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---
Confidence 47888886 89999999999999999998766 89999999999999999999999999999999988887543
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 634 SLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 634 ~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.+.+++|+|++.++++++.+ .+++|++...
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 69999999999999988765 5999998754
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-37 Score=354.97 Aligned_cols=293 Identities=16% Similarity=0.270 Sum_probs=246.9
Q ss_pred cCCCCEEEEEEecCCCeEEEEE----------eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVG----------CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1130)
.+...|.+++|+|+|+.+|++| +.|+.|+|||+.+++.... + ....|...|.+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~ 72 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFND 72 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEE
Confidence 3456889999999998679999 8899999999998763310 0 12368899999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCcc-ceeeeeeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-cCCC---
Q 001184 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGR--- 488 (1130)
Q Consensus 415 v~~spdg~~las~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~V~~i~~s~d-~~~l~l~s~s~d~~v~iwd-~~~~--- 488 (1130)
++|+|++++||+|+.||.|++||+.+... ......+.+|...|.+++|+|+ ++ +|++++.|+.|++|| .+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence 99999999999999999999999987211 1133467899999999999998 66 799999999999999 5555
Q ss_pred ---eee---EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC------CccEEEEEEecCC-Ce
Q 001184 489 ---KLF---QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------GLWCTTMLYSADG-SR 555 (1130)
Q Consensus 489 ---~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~ 555 (1130)
... .+.+|...|.+++|++.. +.+|++++.|+.|++||+++.+....+..+ ...+.+++|+|++ .+
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE
Confidence 332 346799999999997642 479999999999999999998888877776 6789999999998 57
Q ss_pred EEEeeecCCCCc---EEEEeeCCCC-ceeEEEe-cccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeEEEecc
Q 001184 556 LFSCGTSKEGDS---HLVEWNESEG-ALKRTYI-GFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 556 l~~~~~~~~~~~---~i~~wd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
+++++. ++ .|++||++++ ..+..+. +|.. .+.+++|+| ++++|++++.||.|++||+.+++.+..+..+
T Consensus 230 l~~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 230 VATATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp EEEEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred EEEEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 777764 55 9999999986 5667776 6655 899999999 8999999999999999999999999988876
Q ss_pred CCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEcCCC
Q 001184 630 GGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 630 ~~~~~i~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.. .|.+++|+|++ .+|++++.|+.|++|++.+.
T Consensus 305 ~~--~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 305 GN--WCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SS--CCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CC--ceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 54 79999999998 89999999999999999876
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.9e-34 Score=319.18 Aligned_cols=250 Identities=23% Similarity=0.347 Sum_probs=224.7
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|...|.+++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 578999999999999999999999999999999999887544 5789999999999999999 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
| .+++++..+.+|...|.+++|++ ++.+|++++.|+.|++||+++.+....+..|..+|.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9 88999999999999999999976 4579999999999999999999888889999999999999999999999986
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc-
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN- 641 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s- 641 (1130)
++.|++||+.+++.+..+.......+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred ---CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 8999999999999888887666668999999999999999999999999999999998888776543333334444
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCC
Q 001184 642 KEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+++.+|++|+.||.|++||+.++
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTC
T ss_pred CCCcEEEEECCCCEEEEEECCCc
Confidence 67899999999999999998765
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.5e-35 Score=327.76 Aligned_cols=285 Identities=13% Similarity=0.155 Sum_probs=242.4
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
|...|.+++|+|||+ +++++..++.+.+|+........ ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 567899999999998 47777766666666544332221 2348999999999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeee--cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCC--eeeEecCCCcCE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEID--AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR--KLFQFEGHEAPV 500 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~--~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~--~~~~~~~h~~~v 500 (1130)
+++ ||.|++||+.++........+. +|...|.+++|+|+++ ++++++.|+.|++|| .+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 999 9999999999876554444444 7999999999999999 899999999999999 5555 567788999999
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999976 5589999999999999999998888888889999999999999999999986 899999999999888
Q ss_pred EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
..+.. ...+.+++|+|+++++++++.|+.|++||+.+++... +. .+...+.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF--TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec--CCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 87753 3478999999999999999999999999999887643 33 3444899999999999999999999999999
Q ss_pred cCCC
Q 001184 661 NADG 664 (1130)
Q Consensus 661 ~~~~ 664 (1130)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8765
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.9e-34 Score=320.80 Aligned_cols=315 Identities=13% Similarity=0.162 Sum_probs=263.6
Q ss_pred CcccccccCCCCCcccccCC---------cccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecc
Q 001184 316 SVDEATYPVPSQQATWSLDD---------LPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSK 386 (1130)
Q Consensus 316 ~~~~~~~s~~~~~~~~~~~~---------~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~ 386 (1130)
.+..++++|+|+.++..... ........++|...|++++|+|+++ +|++++ ||.|+|||+.+++....
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~~- 87 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP- 87 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC-
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCceee-
Confidence 45668899999865443321 2334555668999999999999998 588888 99999999998764431
Q ss_pred cceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCC
Q 001184 387 PFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPN 466 (1130)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~ 466 (1130)
+. .....+|...|.+++|+|++++|++++.|+.|++||+.+++. .....+.+|...|.+++|+|++
T Consensus 88 -~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 153 (337)
T 1gxr_A 88 -VS------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDS 153 (337)
T ss_dssp -SE------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTS
T ss_pred -ee------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc-ceeeecccCCCceEEEEECCCC
Confidence 11 001237899999999999999999999999999999998763 2334678899999999999999
Q ss_pred CceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEE
Q 001184 467 KQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCT 545 (1130)
Q Consensus 467 ~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~ 545 (1130)
+ ++++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+. +...+.
T Consensus 154 ~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~ 228 (337)
T 1gxr_A 154 K--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIF 228 (337)
T ss_dssp S--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred C--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC--CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceE
Confidence 9 899999999999999 78888999999999999999976 55899999999999999999887776654 556799
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS 625 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 625 (1130)
+++|+|+++++++++. ++.|++||+.+++.. .+..|.. .+.+++|+|+++++++++.||.|++||+.+++.+..
T Consensus 229 ~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 229 SLGYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EEEECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 9999999999999986 889999999988754 4555544 899999999999999999999999999999988755
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 626 ~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
... ...+.+++|+|++++|++++.||.|++|++
T Consensus 303 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 SKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 543 337999999999999999999999999986
No 45
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-34 Score=317.68 Aligned_cols=307 Identities=14% Similarity=0.204 Sum_probs=234.3
Q ss_pred CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC
Q 001184 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
+.+++..+.+|.. .|.+++|+++ +|++|+.|+.|++||+..+ +.+..+....+...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 3556778888776 8999999987 9999999999999999875 344444332355689999999999999999999
Q ss_pred CcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCccc
Q 001184 654 QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN 733 (1130)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1130)
++|++|++.......
T Consensus 80 ~~v~iw~~~~~~~~~----------------------------------------------------------------- 94 (330)
T 2hes_X 80 STVSIWAKEESADRT----------------------------------------------------------------- 94 (330)
T ss_dssp SCEEEEEC------------------------------------------------------------------------
T ss_pred CcEEEEEcccCcCcc-----------------------------------------------------------------
Confidence 999999975320000
Q ss_pred ccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccccc
Q 001184 734 LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAP 813 (1130)
Q Consensus 734 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 813 (1130)
.. .. . +.
T Consensus 95 --------------------------------~~-----------~~-~--------~~--------------------- 101 (330)
T 2hes_X 95 --------------------------------FE-----------MD-L--------LA--------------------- 101 (330)
T ss_dssp --------------------------------CC-----------CE-E--------EE---------------------
T ss_pred --------------------------------cc-----------ce-e--------EE---------------------
Confidence 00 00 0 00
Q ss_pred ccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCC----ceeEEEEeCCCCCeEEEEEeCCCCc
Q 001184 814 QHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMN----FKVMTTFMSPPPASTFLAFHPQDNN 888 (1130)
Q Consensus 814 ~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~~~~ 888 (1130)
...+|...|.+++|+|+|++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++.
T Consensus 102 --------------~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~ 166 (330)
T 2hes_X 102 --------------IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEA 166 (330)
T ss_dssp --------------EEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSS
T ss_pred --------------EEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCC
Confidence 0015888999999999999999998 89999999942 357788899999999999999 899
Q ss_pred EEEEEeCCCcEEEEEeecC--eEEEEEecCCCCeeEEEEccC--CCeEEEEeCCCcEEEEECCCCcccce---eeEeccC
Q 001184 889 IIAIGMEDSTIQIYNVRVD--EVKTKLKGHQKHITGLAFSTN--LNILVSSGSDAQLIFWNTDTWEKRKS---IAIQLPA 961 (1130)
Q Consensus 889 ~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d--g~~L~s~s~Dg~i~vwd~~~~~~~~~---~~~~~~~ 961 (1130)
+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+..... .......
T Consensus 167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 9999999999999999876 678899999999999999999 77999999999999999976422111 1222223
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCcee--eeeeecCCCCCC-CeEEEEECC--CCCEEEEEeCCCcEEEE
Q 001184 962 GKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC--IRQWVPQDVLSS-PISSAAYSC--NSQLIYATFTDGSIGVF 1036 (1130)
Q Consensus 962 ~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~-~v~~v~~s~--dg~~l~t~~~Dg~i~vw 1036 (1130)
..+...|.+++|++++.++.++.|+.|++|+..+++. +.... ..|.. .|.+++|+| ++++||+|+.||+|++|
T Consensus 247 ~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W 324 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRA--LCHGVYEINVVKWLELNGKTILATGGDDGIVNFW 324 (330)
T ss_dssp SCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEES--CTTTTSCEEEEEEC-----CCEEEEETTSEEEEE
T ss_pred cccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccc--cccccceEEEEEEecCCCceEEEEecCCCcEEEE
Confidence 3345789999999888665568899999999987742 32221 23355 899999999 78999999999999999
Q ss_pred eCCC
Q 001184 1037 DADS 1040 (1130)
Q Consensus 1037 d~~~ 1040 (1130)
|+++
T Consensus 325 ~~~~ 328 (330)
T 2hes_X 325 SLEK 328 (330)
T ss_dssp EC--
T ss_pred Eecc
Confidence 9864
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.3e-35 Score=342.20 Aligned_cols=283 Identities=16% Similarity=0.163 Sum_probs=238.5
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
..+++++|+|+|++ |++|+.||.|++||+.+++... .+..| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 34558999999995 8999999999999998876543 23345 455666899999999999
Q ss_pred eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeec
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPH 506 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~ 506 (1130)
+.||.|++||+.+++... .+.+|.+.|++++|+|+++ +|++++.|+.|++|| .+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999876543 5678999999999999999 899999999999999 8889999999999999999997
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcceeeecC---CCccEEEE---------------------EEecCCCeEEEeeec
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA---PGLWCTTM---------------------LYSADGSRLFSCGTS 562 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~---------------------~~s~~~~~l~~~~~~ 562 (1130)
+ ++.+|++++.|+.|++||+++.+....+.. +...+.++ +|+|++++|++++.
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV- 267 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence 6 558999999999999999998887777654 33344444 45788999999886
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCce-eEEEeccCCCCCcceEEE
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVNM-LTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~i~~v~~ 640 (1130)
++.|++||+++++....+...+...+.+++|+|+++ ++++|+.||.|++||+.+++. +..+..+. ...+.++.+
T Consensus 268 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~ 343 (420)
T 3vl1_A 268 ---SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYF 343 (420)
T ss_dssp ---TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEE
T ss_pred ---CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEe
Confidence 899999999999988888766666899999999998 999999999999999998754 66666532 236777755
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 641 NKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+++++|++++.|+.|++|++...
T Consensus 344 -~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 -AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -ETTEEEEEETTTEEEEEEEECCT
T ss_pred -CCCCEEEEecCCccEEEEeccCC
Confidence 46889999999999999998764
No 47
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-34 Score=358.08 Aligned_cols=292 Identities=21% Similarity=0.292 Sum_probs=250.1
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|.+.|++++|+|++..+|++|+.||+|+|||+.++..... .....+.+|...|.+++|+|||++|
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g~~l 445 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDGQFA 445 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTSSEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCCCEE
Confidence 59999999999998766899999999999999986543210 0112478999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEe----cCCCcCE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF----EGHEAPV 500 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~----~~h~~~v 500 (1130)
++|+.|++|++||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||..+.+...+ .+|...|
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred EEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 999999999999999987554 6789999999999999999 799999999999999655555444 4799999
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
.+++|++......+++++.|++|++||++.......+..|...|.+++|+|++++|++++. ++.|++||+.+++.+
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGKKL 596 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTEEE
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCceE
Confidence 9999988766678999999999999999999888899999999999999999999999986 899999999999888
Q ss_pred EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC-----------------CCCCcceEEEcCC
Q 001184 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-----------------GLPSLPRLRFNKE 643 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----------------~~~~i~~v~~s~~ 643 (1130)
..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+. +...+.+++|+|+
T Consensus 597 ~~~~~~--~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd 673 (694)
T 3dm0_A 597 YSLEAN--SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673 (694)
T ss_dssp ECCBCS--SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred EEecCC--CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence 776643 3699999999988777665 5669999999998887765321 1113678999999
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 001184 644 GNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~ 662 (1130)
|++|++|+.||.|++|++.
T Consensus 674 g~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 674 GSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SSEEEEEETTSEEEEEEC-
T ss_pred CCEEEEEcCCCeEEEEecc
Confidence 9999999999999999974
No 48
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=345.75 Aligned_cols=273 Identities=10% Similarity=0.088 Sum_probs=211.6
Q ss_pred ccceeeeccCCCCEEEEEEecCC---------CeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecC
Q 001184 337 PRAVACTMHQGSSVVSMDFHPFH---------HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407 (1130)
Q Consensus 337 ~~~~~~~~~h~~~V~~v~fspdg---------~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1130)
+.....++.+.+.|++|+|+|++ + +||+|+.++. +
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~--------~--------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYM--------D--------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEeccc--------C---------------------------
Confidence 45566667789999999999997 5 6888875531 0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCcccee-eeeeecCCCCeeEEEEecC------CCceEEEEEcCCCcE
Q 001184 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQ-SLEIDAHVGGVNDLAFSYP------NKQLCIVTCGDDKLI 480 (1130)
Q Consensus 408 h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~h~~~V~~i~~s~d------~~~l~l~s~s~d~~v 480 (1130)
-..+|+++.||+++.|++|+|||+.+++.... ...+.+|.+.|.+++|+|+ +. +|++++.|++|
T Consensus 167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv 237 (524)
T 2j04_B 167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI 237 (524)
T ss_dssp ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence 01378999999999999999999988764321 2346678899999999997 45 79999999999
Q ss_pred EEEe-cCCCe-----------eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc-eeeecCCCccEEEE
Q 001184 481 RVWD-LSGRK-----------LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTM 547 (1130)
Q Consensus 481 ~iwd-~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~ 547 (1130)
+||| ..+.. ...+.+|...|.+++|++. ..|++|+.||+|++||+++... ...+..|...|.++
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999 44432 2477899999999999752 4799999999999999987643 44578899999999
Q ss_pred --EEecCC-CeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC-ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001184 548 --LYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK-KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 548 --~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
+|+|++ ++|++++. |++|++||+++++....+.+|.. ..+.+++|+|+++.+++++.|++|++||++++..+
T Consensus 315 ~~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~ 390 (524)
T 2j04_B 315 STAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV 390 (524)
T ss_dssp EEECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC
T ss_pred EEEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc
Confidence 578888 88999986 99999999999888888877654 24778999999999999999999999999999888
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 624 ~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
..+..|.. .|.+++|+|++++|++|+.|++|++|+...
T Consensus 391 ~~l~gH~~--~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 391 HPLVSRET--TITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEEECSS--CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred eeeecCCC--ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 87776544 899999999999999999999999999643
No 49
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.7e-34 Score=328.41 Aligned_cols=290 Identities=15% Similarity=0.199 Sum_probs=243.7
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCC
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGN 422 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~ 422 (1130)
.+|...|++++|+|++..+|++|+.||.|+|||+.+++..... ...+|...|.+++|+| +++
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEEETTEEE
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEeCCCCCC
Confidence 3599999999999999337999999999999999987765410 1347999999999999 789
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEE
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~ 502 (1130)
+|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ ++++++.|+.|++||.+++.+..+.+|...|.+
T Consensus 133 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp EEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEETTSCEEEEEECSSSCEEE
T ss_pred EEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEECCCCEEEEeccCCCcEEE
Confidence 999999999999999986 33443333345568899999999999 899999999999999889999999999999999
Q ss_pred EeecccCCcc-EEEEEecCCcEEEEEccC----CcceeeecCCCccEEEEEEec-CCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 503 VCPHQKENIH-FIFSTAVDGKIKAWLYDN----VGSRVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 503 ~~~~~~~~~~-~l~s~s~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
++|++. +. ++++++.|+.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++.|++||+.+
T Consensus 210 ~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~~ 282 (383)
T 3ei3_B 210 AEFNPR--CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSYD 282 (383)
T ss_dssp EEECSS--CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEEEETTB
T ss_pred EEECCC--CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECCC
Confidence 999764 35 899999999999999987 3334444 5788999999999 9999999986 89999999999
Q ss_pred CceeEEEecccC----------------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE
Q 001184 577 GALKRTYIGFRK----------------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 577 ~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1130)
++....+.+|.. ..+..++|+|++++ +++.||.|++||+.+++.+..+..+.+...+..++|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~ 360 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF 360 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE
T ss_pred CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE
Confidence 988777775431 13344666777666 777999999999999999999987655557788899
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCC
Q 001184 641 NKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+|++++|++++ |+.|++|++++
T Consensus 361 s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 361 SPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTTSSEEEEEE-TTEEEEEECC-
T ss_pred ecCccEEEEec-CCcEEEEecCC
Confidence 99999999997 99999999864
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1e-34 Score=336.84 Aligned_cols=343 Identities=11% Similarity=0.108 Sum_probs=280.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCe
Q 001184 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK 489 (1130)
Q Consensus 411 ~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~ 489 (1130)
.+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++|| .+++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence 45579999999999999999999999998876544 34455 4455667899999 899999999999999 77777
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
+..+.+|...|.+++|++ ++.+|++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. ++.|
T Consensus 132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v 205 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI 205 (420)
T ss_dssp EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence 777889999999999976 4579999999999999999999988899999999999999999999999986 8999
Q ss_pred EEeeCCCCceeEEEeccc--CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEE
Q 001184 570 VEWNESEGALKRTYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1130)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l 647 (1130)
++||+++++.+..+..+. ...+.++++.+.+... ....+...+.+++|+|++++|
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------------------~~~~~~~~v~~~~~s~~~~~l 262 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ-----------------------LHEISTSKKNNLEFGTYGKYV 262 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-----------------------CGGGCCCCCCTTCSSCTTEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCcce-----------------------eeecccCcccceEEcCCCCEE
Confidence 999999999999887642 3357777776554221 011123368899999999999
Q ss_pred EEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccC
Q 001184 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1130)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1130)
++++.||.|++||+.++....
T Consensus 263 ~~~~~dg~i~i~d~~~~~~~~----------------------------------------------------------- 283 (420)
T 3vl1_A 263 IAGHVSGVITVHNVFSKEQTI----------------------------------------------------------- 283 (420)
T ss_dssp EEEETTSCEEEEETTTCCEEE-----------------------------------------------------------
T ss_pred EEEcCCCeEEEEECCCCceeE-----------------------------------------------------------
Confidence 999999999999986541000
Q ss_pred CCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccc
Q 001184 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1130)
Q Consensus 728 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1130)
.
T Consensus 284 ----------------------------------------------------------------~--------------- 284 (420)
T 3vl1_A 284 ----------------------------------------------------------------Q--------------- 284 (420)
T ss_dssp ----------------------------------------------------------------E---------------
T ss_pred ----------------------------------------------------------------E---------------
Confidence 0
Q ss_pred ccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC-EEEEEe-CCeEEEEECCCcee-EEEEeC-CCCCeEEEEEe
Q 001184 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS-YVMSAG-GGKVSLFNMMNFKV-MTTFMS-PPPASTFLAFH 883 (1130)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s 883 (1130)
+...|...|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...+.++.+
T Consensus 285 --------------------~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~- 343 (420)
T 3vl1_A 285 --------------------LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF- 343 (420)
T ss_dssp --------------------ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-
T ss_pred --------------------cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-
Confidence 0013677889999999998 888888 89999999988754 666665 6677888855
Q ss_pred CCCCcEEEEEeCCCcEEEEEeecC---------eEEEEEecCCCCeeEEEEccCCC---eEEEEeCCCcEEEEECCC
Q 001184 884 PQDNNIIAIGMEDSTIQIYNVRVD---------EVKTKLKGHQKHITGLAFSTNLN---ILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 884 p~~~~~lasg~~dg~v~iwd~~~~---------~~~~~l~~h~~~V~~l~~s~dg~---~L~s~s~Dg~i~vwd~~~ 948 (1130)
+ ++.+|++++.||.|++|++... .....+.+|.+.|.+++|+|++. .|++++.+|.+.+|+++.
T Consensus 344 ~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 344 A-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp E-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred C-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 4 5679999999999999999863 22334678999999999999999 888899999999999875
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-35 Score=341.28 Aligned_cols=347 Identities=9% Similarity=0.082 Sum_probs=263.7
Q ss_pred ecCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEEecC---CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 405 VKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQG---SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 405 ~~~h~~~V~~v~~sp-dg~~las~~~d~~i~vwd~~~---~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
..+|.+.|++++|+| |+++||+|+.||+|++||+.+ +........+ +|.+.|.+++|+|+++ +|++|+.|++|
T Consensus 59 ~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i 135 (437)
T 3gre_A 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQI 135 (437)
T ss_dssp CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEE
Confidence 379999999999999 999999999999999999987 5433323233 5999999999999999 89999999999
Q ss_pred EEEec----CCCeeeEecC------------CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC--CCc
Q 001184 481 RVWDL----SGRKLFQFEG------------HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PGL 542 (1130)
Q Consensus 481 ~iwd~----~~~~~~~~~~------------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~ 542 (1130)
++||. +++.+..+.+ +...+.++.+...+++.+|++++.|+.|++||+++.+....+.. |..
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 99994 5655554432 45566666655667789999999999999999999998888887 678
Q ss_pred cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEc----CCCCEEEEEeCCCcEEEEeCC
Q 001184 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFD----TTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
.|.+++|+|++++|++++. ++.|++||+++++.+..+...+...+.+++++ +++.++++++.||.|++||+.
T Consensus 216 ~v~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTT----RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp CEEEEEECTTSCEEEEEET----TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEcC----CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 9999999999999999986 89999999999999998863334489999655 467799999999999999999
Q ss_pred CCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccc
Q 001184 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1130)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1130)
+++.+..+..+.. .+..+.|+|+++.+ ...
T Consensus 292 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l--------------~~~---------------------------------- 321 (437)
T 3gre_A 292 KGHCQYAFINSDE--QPSMEHFLPIEKGL--------------EEL---------------------------------- 321 (437)
T ss_dssp TTEEEEEEESSSS--CCCGGGGSCBCSSG--------------GGC----------------------------------
T ss_pred CCcEEEEEEcCCC--CCccceeccccccc--------------ccc----------------------------------
Confidence 9988887765543 44444455543221 000
Q ss_pred ccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEecc
Q 001184 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1130)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1130)
T Consensus 322 -------------------------------------------------------------------------------- 321 (437)
T 3gre_A 322 -------------------------------------------------------------------------------- 321 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEE
Q 001184 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVS 857 (1130)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~ 857 (1130)
.+ ....|...|.+++|+ ++++|++++ ||.|+
T Consensus 322 -----------~~------------------------------------~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~ 353 (437)
T 3gre_A 322 -----------NF------------------------------------CGIRSLNALSTISVS-NDKILLTDEATSSIV 353 (437)
T ss_dssp -----------CC------------------------------------CCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred -----------ee------------------------------------cccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence 00 000267778889999 778888888 89999
Q ss_pred EEECCCceeEEEEeCCC---CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccC--CCeE
Q 001184 858 LFNMMNFKVMTTFMSPP---PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN--LNIL 932 (1130)
Q Consensus 858 iwd~~~~~~~~~~~~~~---~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d--g~~L 932 (1130)
+||+.+++....+.+|. .......+++ +..+++.. |+...+.....+..|.+.|++++|+++ +.+|
T Consensus 354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l 424 (437)
T 3gre_A 354 MFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLL 424 (437)
T ss_dssp EEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEE
T ss_pred EEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEE
Confidence 99999999888888754 3355566666 44444433 333344445666779999999999998 7899
Q ss_pred EEEeCCCcEEEEE
Q 001184 933 VSSGSDAQLIFWN 945 (1130)
Q Consensus 933 ~s~s~Dg~i~vwd 945 (1130)
++++.||.|+||+
T Consensus 425 ~s~~~dG~I~iw~ 437 (437)
T 3gre_A 425 VACDNSGLIGIFQ 437 (437)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEcCCceEEEeC
Confidence 9999999999995
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-33 Score=316.17 Aligned_cols=246 Identities=22% Similarity=0.343 Sum_probs=207.8
Q ss_pred eecCCCccEEEEEE-----cC-CCCEEEEEeCCCeEEEEEecCCcc----ceeeeeeecCCCCeeEEEEecCCCceEEEE
Q 001184 404 IVKDSSISVSRVAW-----SP-DGNFIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVT 473 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~-----sp-dg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s 473 (1130)
.+.+|.+.|++++| ++ |+++||+|+.|++|++||+..++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 68899999999999 77 999999999999999999976532 123346789999999999999999 8999
Q ss_pred EcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee---cCCCccEEEEEE
Q 001184 474 CGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY---DAPGLWCTTMLY 549 (1130)
Q Consensus 474 ~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~ 549 (1130)
|+.|++|++|| .+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+.... .... ..+...|.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeee
Confidence 99999999999 88999999999999999999975 55799999999999999997432 2222 256778999999
Q ss_pred ecCC----------CeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 550 SADG----------SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 550 s~~~----------~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
+|++ .++++++. ++.|++|| ...+....+.+|.. .+.+++|+|++++|++|+.||.|++||+..
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9987 68898886 89999999 45677778888765 899999999999999999999999999944
Q ss_pred -CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 620 -VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 620 -~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
......+.. .+ .|.+++|+|++.+++++ .|+.+++|++.++
T Consensus 245 ~~~~~~~~~~-~~--~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 245 LTYPQREFDA-GS--TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp CSSCSEEEEC-SS--CEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CcccceeecC-CC--cEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 444444432 22 69999999999887755 5778999998765
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-35 Score=337.81 Aligned_cols=318 Identities=15% Similarity=0.206 Sum_probs=265.5
Q ss_pred ccccCCCCCcccccCCccc-ceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCC----ceeecccceeeecc
Q 001184 320 ATYPVPSQQATWSLDDLPR-AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR----ERLVSKPFKIWDMS 394 (1130)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~ 394 (1130)
++++.++.+.+|+.+.... .....+.|...|++++|+|+++ +|++|+.||.|+|||+.+. +.+.
T Consensus 39 ~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~---------- 107 (416)
T 2pm9_A 39 ANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAINSMA---------- 107 (416)
T ss_dssp SSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTSCCCEEE----------
T ss_pred cccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC-eEEEEccCCeEEEeecccccccccchh----------
Confidence 4557788888898876543 3555667999999999999998 5899999999999999872 2222
Q ss_pred ccccceeeeeecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCc------cceeeeeeecCCCCeeEEEEecCCC
Q 001184 395 NCSMMLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSN------DLCQSLEIDAHVGGVNDLAFSYPNK 467 (1130)
Q Consensus 395 ~~~~~~~~~~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~------~~~~~~~~~~h~~~V~~i~~s~d~~ 467 (1130)
.+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++ .......+.+|...|.+++|+|++.
T Consensus 108 ---------~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 178 (416)
T 2pm9_A 108 ---------RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLA 178 (416)
T ss_dssp ---------ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCT
T ss_pred ---------hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCC
Confidence 46789999999999998 8999999999999999999876 3332234568999999999999943
Q ss_pred ceEEEEEcCCCcEEEEe-cCCCeeeEecCC------CcCEEEEeecccCCccEEEEEecCC---cEEEEEccCC-cceee
Q 001184 468 QLCIVTCGDDKLIRVWD-LSGRKLFQFEGH------EAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNV-GSRVD 536 (1130)
Q Consensus 468 ~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~-~~~~~ 536 (1130)
. ++++++.|+.|++|| .+++.+..+..| ...|.+++|++.. ..++++++.|+ .|++||+++. .....
T Consensus 179 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~ 256 (416)
T 2pm9_A 179 H-VFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN-STRVATATGSDNDPSILIWDLRNANTPLQT 256 (416)
T ss_dssp T-EEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC-TTEEEEEECCSSSCCCCEEETTSTTSCSBC
T ss_pred c-EEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC-CCEEEEEECCCCCceEEEEeCCCCCCCcEE
Confidence 3 899999999999999 778888888776 7899999997643 26899999999 9999999986 45556
Q ss_pred ec-CCCccEEEEEEec-CCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEE
Q 001184 537 YD-APGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIK 613 (1130)
Q Consensus 537 ~~-~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~ 613 (1130)
+. .|...|.+++|+| ++++|++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++ .++++++.||.|+
T Consensus 257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~----dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 257 LNQGHQKGILSLDWCHQDEHLLLSSGR----DNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp CCSCCSSCEEEEEECSSCSSCEEEEES----SSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSSEEE
T ss_pred eecCccCceeEEEeCCCCCCeEEEEeC----CCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCCcEE
Confidence 66 7888999999999 9999999986 89999999999999999998766 79999999999 8999999999999
Q ss_pred EEeCCCCceeEEEec--------------------c-------------CCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 614 FWDMDNVNMLTSTEA--------------------E-------------GGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 614 vwd~~~~~~~~~~~~--------------------~-------------~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
+||+.++........ + .+...+.+++|+|+|++|++++.|+.|+||+
T Consensus 332 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 332 VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp EEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred EEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 999987653221100 0 0334677999999999999999999999999
Q ss_pred cCCC
Q 001184 661 NADG 664 (1130)
Q Consensus 661 ~~~~ 664 (1130)
+.+.
T Consensus 412 ~~~~ 415 (416)
T 2pm9_A 412 PKIS 415 (416)
T ss_dssp CCCC
T ss_pred eccC
Confidence 8764
No 54
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-35 Score=344.08 Aligned_cols=343 Identities=10% Similarity=0.084 Sum_probs=233.1
Q ss_pred CCccEEEEEEcCCC---------CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001184 408 SSISVSRVAWSPDG---------NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1130)
Q Consensus 408 h~~~V~~v~~spdg---------~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~ 478 (1130)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 57789999999987 799999866420 01368888 789999999
Q ss_pred cEEEEe-cCCCee----eEecCCCcCEEEEeeccc----CCccEEEEEecCCcEEEEEccCCcc-----------eeeec
Q 001184 479 LIRVWD-LSGRKL----FQFEGHEAPVYSVCPHQK----ENIHFIFSTAVDGKIKAWLYDNVGS-----------RVDYD 538 (1130)
Q Consensus 479 ~v~iwd-~~~~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~ 538 (1130)
+|+||| ..++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 999999 555532 446678899999999986 3467999999999999999976542 23566
Q ss_pred CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEE--EEcCCC-CEEEEEeCCCcEEE
Q 001184 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVV--QFDTTR-NRILAAGEDNQIKF 614 (1130)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~v 614 (1130)
.|...|.+++|++++ .|++++. |++|++||++++. ....+.+|.. .|.++ +|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788899999999865 7888876 9999999999774 4556777766 78888 578887 89999999999999
Q ss_pred EeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceee
Q 001184 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1130)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1130)
||+++++.+..+..+.....|.+++|+|+++.+++++.|++|++||+.++. ....+
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~l----------------------- 393 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVHPL----------------------- 393 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCEEE-----------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-cceee-----------------------
Confidence 999998877666655432357899999999999999999999999986541 00000
Q ss_pred ccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEE
Q 001184 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1130)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1130)
.
T Consensus 394 ---------------------------------------------------------------------~---------- 394 (524)
T 2j04_B 394 ---------------------------------------------------------------------V---------- 394 (524)
T ss_dssp ---------------------------------------------------------------------E----------
T ss_pred ---------------------------------------------------------------------e----------
Confidence 0
Q ss_pred EeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-C
Q 001184 775 YTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-G 853 (1130)
Q Consensus 775 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-d 853 (1130)
+|...|.+++|+|+|++|++|+ |
T Consensus 395 --------------------------------------------------------gH~~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 395 --------------------------------------------------------SRETTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp --------------------------------------------------------ECSSCEEEEECCSSCCBCEEEETT
T ss_pred --------------------------------------------------------cCCCceEEEEeCCCCCeEEEEECC
Confidence 2455555666666666666555 5
Q ss_pred CeEEEEECCCceeEEEEe-----CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee-cCeEEEEEecCCCCeeEEEEcc
Q 001184 854 GKVSLFNMMNFKVMTTFM-----SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKTKLKGHQKHITGLAFST 927 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~~~-----~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l~~h~~~V~~l~~s~ 927 (1130)
|+|++||+..+ .+.... .+...+.+++|+| ++..+. ... .+.+|+.. ++.++..+.+|...|.+|+|+|
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-KDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCS-SSCEEE-ECC--CCCCCC-------------CCCSCCCEEECC
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCC-CCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCC
Confidence 66666665432 111110 0112466889999 666442 222 23444433 5677888999999999999999
Q ss_pred CCC---eEEEEeCCCcEEEEECCC
Q 001184 928 NLN---ILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 928 dg~---~L~s~s~Dg~i~vwd~~~ 948 (1130)
++. +||+|+.||.|+||++..
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCCccHHHHhhccCceEEEEEccc
Confidence 964 999999999999999886
No 55
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-34 Score=335.10 Aligned_cols=293 Identities=18% Similarity=0.260 Sum_probs=237.3
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 423 (1130)
.|...|+|++|+|.+..+||+|+.||+|+|||+.+++.... ..+.+|.+.|++|+|+| |+++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~~ 179 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTNQ 179 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTTE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCCE
Confidence 48899999999996555799999999999999988764321 12568999999999998 7899
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~ 503 (1130)
|++|+.||+|++||++++. .........+...+.+++|+|+++ +|++|+.||.|++||.+++.+..+.+|...|.++
T Consensus 180 l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 180 FYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEE
T ss_pred EEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccCcceeEEEecccceEEee
Confidence 9999999999999998754 222222334455789999999999 8999999999999998888999999999999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCccee---eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
+|+|..+ .++++++.|+.|++||++...... ....|...|.+++|+|+|++|++++. |+.|++||+.++...
T Consensus 257 ~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 9987543 588999999999999998766543 33457789999999999999999986 899999999999888
Q ss_pred EEEecccCc-----eeEEEEEcCCCCEEEEEe------------CCCcEEEEeCCCCceeEEEeccCCCCCcceE-EEcC
Q 001184 581 RTYIGFRKK-----SAGVVQFDTTRNRILAAG------------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL-RFNK 642 (1130)
Q Consensus 581 ~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v-~~s~ 642 (1130)
..+..|... ......|+|++..+++++ .++.|++||..+++.+..+..+ +...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-~~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS-SCCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC-CCCcEEEEEEECC
Confidence 877665431 122356777777666654 3467999999999998877543 33367776 6999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC
Q 001184 643 EGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|++|++|+ |+.|+||+++++
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999999876 789999999877
No 56
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-33 Score=320.59 Aligned_cols=290 Identities=14% Similarity=0.295 Sum_probs=232.4
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC------------------ccEEEEEEecCCCeE
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG------------------LWCTTMLYSADGSRL 556 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------------------~~v~~~~~s~~~~~l 556 (1130)
+|...|.+++|+| ++++|++++ ++.+++|++.++.....+..+. ..|.+++|+|+|++|
T Consensus 62 ~h~~~V~~v~fsp--dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECC--CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 6999999999965 567898876 7899999999887776655432 248999999999999
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcc
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~ 636 (1130)
++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.+++....+..+. .+.
T Consensus 139 ~s~~~----d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~v~ 210 (393)
T 1erj_A 139 ATGAE----DRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVT 210 (393)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEcC----CCeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC---CcE
Confidence 99986 89999999999999999998776 89999999999999999999999999999999887776543 689
Q ss_pred eEEEcC-CCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCc
Q 001184 637 RLRFNK-EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPS 715 (1130)
Q Consensus 637 ~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~ 715 (1130)
+++|+| +++++++++.|+.|++||+.++. ....+.. .
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~-------------------------~---------------- 248 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDS-------------------------E---------------- 248 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC-------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecc-------------------------c----------------
Confidence 999999 89999999999999999987651 1100000 0
Q ss_pred ccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeee
Q 001184 716 TILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1130)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1130)
.....
T Consensus 249 --------------------------------------------~~~~~------------------------------- 253 (393)
T 1erj_A 249 --------------------------------------------NESGT------------------------------- 253 (393)
T ss_dssp ------------------------------------------------C-------------------------------
T ss_pred --------------------------------------------ccCCC-------------------------------
Confidence 00001
Q ss_pred cCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCC-----------
Q 001184 796 WNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMN----------- 863 (1130)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~----------- 863 (1130)
+|...|.+++|+|+|++|++++ |+.|++||+.+
T Consensus 254 -----------------------------------~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 254 -----------------------------------GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp -----------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred -----------------------------------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 2444455555555555555554 45555555433
Q ss_pred -ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEcc------CCCeEEEEe
Q 001184 864 -FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFST------NLNILVSSG 936 (1130)
Q Consensus 864 -~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~------dg~~L~s~s 936 (1130)
+.+...+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++ ++++|++++
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred CCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 345567788999999999999 889999999999999999999999999999999999999986 688999999
Q ss_pred CCCcEEEEECCC
Q 001184 937 SDAQLIFWNTDT 948 (1130)
Q Consensus 937 ~Dg~i~vwd~~~ 948 (1130)
.||+|++|++..
T Consensus 378 ~Dg~i~iW~~~~ 389 (393)
T 1erj_A 378 GDCKARIWKYKK 389 (393)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCcEEECcccc
Confidence 999999999865
No 57
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=4.5e-32 Score=350.10 Aligned_cols=531 Identities=11% Similarity=0.027 Sum_probs=371.6
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC------CCcEE
Q 001184 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------DKLIR 481 (1130)
Q Consensus 408 h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~------d~~v~ 481 (1130)
+.+.+.+.+||| +.||.++. +.|.+|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456789999996 58888876 68999999887633 4678999999999999999 5666543 34799
Q ss_pred EEecCCCeeeEecCCCcCE-------EEEeecccCCccEEEEEecC------CcEEEEEccCCcceeeecCCCccEEEEE
Q 001184 482 VWDLSGRKLFQFEGHEAPV-------YSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGSRVDYDAPGLWCTTML 548 (1130)
Q Consensus 482 iwd~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~ 548 (1130)
+||..+.....+..|...+ ..++|+|+ ++++++++.+ ..|..|++..+....... + ....++
T Consensus 84 ~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpD--g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~--~~~~~~ 158 (1045)
T 1k32_A 84 FYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPD--GNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-G--PATHIL 158 (1045)
T ss_dssp EEETTTTEEEECCCCCEEEETTEECSEEEEECTT--CCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-C--SCSEEE
T ss_pred EEECCCCCeEEcccCCCcccccccccccccCCCC--CEEEEEECCcCCCcccceEEEEECCCCCeEEecC-C--Ccceee
Confidence 9996666688899999888 89999764 4677777754 357777776654433222 2 234577
Q ss_pred EecCCCeEEEeeecCC--------CCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-
Q 001184 549 YSADGSRLFSCGTSKE--------GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN- 619 (1130)
Q Consensus 549 ~s~~~~~l~~~~~~~~--------~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~- 619 (1130)
|+| | ++++++...+ ++....+|....+.....+.+|.. .+.++.|+++ ..+++++.|+.+++|.+..
T Consensus 159 ~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~-~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 159 FAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST-HVSSPVIVGH-RIYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp EET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS-CCEEEEEETT-EEEEEECTTSSCEEEEEETT
T ss_pred eCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC-cccceEEeCC-EEEEEEeccCceEEEEEeCC
Confidence 999 8 7777642111 122334443322234455566554 7889999988 5667778889999997653
Q ss_pred CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccc
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1130)
+.....+..+. .+...+|+|||+.|+.+ .++.|++|++... . +..+..+..
T Consensus 235 g~~~~~l~~~~---~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~-l~~l~~~~~----------------------- 285 (1045)
T 1k32_A 235 GKDLRKHTSFT---DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-K-IEKIEIGDL----------------------- 285 (1045)
T ss_dssp SCSCEECCCCC---SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-C-EEECCCCCC-----------------------
T ss_pred CCcceEecCCC---CcceeeEcCCCCEEEEE-eCCEEEEecCCce-E-eeeeccCcc-----------------------
Confidence 33444444333 46778999999998887 4889999987322 1 111110000
Q ss_pred cccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEe-cc
Q 001184 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT-NS 778 (1130)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~ 778 (1130)
.....| ..+...+..++|+ ||
T Consensus 286 ---------------------------------------~~~~~~-------------------~~~~~~v~~~~~S~pd 307 (1045)
T 1k32_A 286 ---------------------------------------ESPEDR-------------------IISIPSKFAEDFSPLD 307 (1045)
T ss_dssp ---------------------------------------CBCCSE-------------------EEECGGGGEEEEEECG
T ss_pred ---------------------------------------cccccc-------------------cccccccceeeecCCC
Confidence 000000 0145678899999 99
Q ss_pred CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCC-ceeEEEEecCCCEEEEEe-CCeE
Q 001184 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAED-VVPCVALSKNDSYVMSAG-GGKV 856 (1130)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~i~~l~~s~dg~~la~~~-dg~i 856 (1130)
|+.+++++ ++.+.+|+... +.... + ..+.. .+..++|+ ||+.++.++ ++.+
T Consensus 308 G~~la~~~-~~~i~~~~~~~----------------------~~~~~--~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l 360 (1045)
T 1k32_A 308 GDLIAFVS-RGQAFIQDVSG----------------------TYVLK--V-PEPLRIRYVRRGGD-TKVAFIHGTREGDF 360 (1045)
T ss_dssp GGCEEEEE-TTEEEEECTTS----------------------SBEEE--C-SCCSCEEEEEECSS-SEEEEEEEETTEEE
T ss_pred CCEEEEEE-cCEEEEEcCCC----------------------CceEE--c-cCCCcceEEeeeEc-CCCeEEEEECCCce
Confidence 99998887 77888876532 22111 1 13455 78999999 999999888 5678
Q ss_pred E-EEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEE
Q 001184 857 S-LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS 935 (1130)
Q Consensus 857 ~-iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~ 935 (1130)
. +||+.+++... +..|...+..++|+| ++++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|+++
T Consensus 361 ~~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~ 438 (1045)
T 1k32_A 361 LGIYDYRTGKAEK-FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG 438 (1045)
T ss_dssp EEEEETTTCCEEE-CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred EEEEECCCCCceE-ecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEE
Confidence 8 99998876544 347778899999999 89999999999999999999999888888899999999999999999988
Q ss_pred eCCC----------cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcCCcEEEEECCCcee------
Q 001184 936 GSDA----------QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMEC------ 998 (1130)
Q Consensus 936 s~Dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~------ 998 (1130)
+.++ .|++||+.+++. ..... +...+..++|+|||++|+. +.++...+|+......
T Consensus 439 ~~~~~~~~~~~~~~~i~l~d~~~g~~-----~~l~~--~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 511 (1045)
T 1k32_A 439 FPLKHGETDGYVMQAIHVYDMEGRKI-----FAATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS 511 (1045)
T ss_dssp EEECSSTTCSCCEEEEEEEETTTTEE-----EECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCB
T ss_pred ecCccccccCCCCCeEEEEECCCCcE-----EEeeC--CCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCc
Confidence 7754 899999998541 12221 2256788999999999887 4555556665432211
Q ss_pred -ee---------------------------------eeecCCCCCCCeEEEEECCCCCEEEE-------------EeCCC
Q 001184 999 -IR---------------------------------QWVPQDVLSSPISSAAYSCNSQLIYA-------------TFTDG 1031 (1130)
Q Consensus 999 -~~---------------------------------~~~~~~~~~~~v~~v~~s~dg~~l~t-------------~~~Dg 1031 (1130)
+. .......+...+..++++|||+++++ ...+.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~ 591 (1045)
T 1k32_A 512 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 591 (1045)
T ss_dssp EEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCE
T ss_pred eeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCc
Confidence 00 00011123567899999999997875 12345
Q ss_pred cEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1032 SIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1032 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
.|++||+.+++..... ..+..+.++| |+..|++++.| .|++||+.+++
T Consensus 592 ~l~~~d~~~~~~~~l~---------------~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 592 VLLKYDVKTRKVTEVK---------------NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEEETTTCCEEEEE---------------EEEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred eEEEEECCCCcEEEee---------------cCcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 7889999888753221 1234578888 58889998877 79999998876
No 58
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-33 Score=315.89 Aligned_cols=287 Identities=13% Similarity=0.121 Sum_probs=254.0
Q ss_pred eeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 342 ~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
...+|...|++++|+|+|+ +|++|+.||.|+|||+.+++.+. .+.+|...|.+++|+|++
T Consensus 27 ~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~ 86 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDVDCFT 86 (369)
T ss_dssp EEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEEcCCC
Confidence 3446999999999999998 59999999999999999988765 477899999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC-----CcEEEEe-cCCC-------
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-----KLIRVWD-LSGR------- 488 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d-----~~v~iwd-~~~~------- 488 (1130)
++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++|| ..+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 160 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTK 160 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence 999999999999999999987655 344 888999999999999 78999888 9999999 4432
Q ss_pred ----eeeEecCCCc--CEEEEeecccCCccEEEEEecCCcEEEEEccC-CcceeeecCCCccEEEEEEecCCCeEEEeee
Q 001184 489 ----KLFQFEGHEA--PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 489 ----~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
.+..+..|.. .+.+++|++ ++.+|++++.||.|++||+++ ......+..+...|.+++|+|++++|++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 238 (369)
T 3zwl_B 161 VSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR 238 (369)
T ss_dssp ECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred cccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC
Confidence 4455666776 899999976 557999999999999999998 6667788888999999999999999999986
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC--------------cEEEEeCCCCceeEEEe
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN--------------QIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~vwd~~~~~~~~~~~ 627 (1130)
++.|++||+.+++.+..+.. ...+..++|+|+++++++++.++ .+++||..+++.+..+.
T Consensus 239 ----d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 312 (369)
T 3zwl_B 239 ----DTNSFLVDVSTLQVLKKYET--DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312 (369)
T ss_dssp ----TSEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred ----CceEEEEECCCCceeeeecC--CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence 89999999999999988873 34789999999999999999888 89999999999999887
Q ss_pred ccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 628 AEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 628 ~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.+.. .|.+++|+|++++|++++.||.|++|++..+
T Consensus 313 ~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 313 GHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 6654 8999999999999999999999999999765
No 59
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-33 Score=307.58 Aligned_cols=287 Identities=17% Similarity=0.273 Sum_probs=249.9
Q ss_pred ceeeec-cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 339 AVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 339 ~~~~~~-~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
+..+.+ +|.+.|++++| |+++ +|++|+.||.|+|||+.+++... .+..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEE
Confidence 344455 59999999999 9998 59999999999999998877654 46688999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCC
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHE 497 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~ 497 (1130)
+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|.
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d-~~~~~~~~~~~~ 142 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK-EGSLVYNLQAHN 142 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE-TTEEEEEEECCS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc-CCcEEEecccCC
Confidence 999999999999999999999876544455578899999999999 466 799999999999999 778888999999
Q ss_pred cCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC-CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
..+.++++.+. ++..+++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+++
T Consensus 143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~ 214 (313)
T 3odt_A 143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHT 214 (313)
T ss_dssp SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTT
T ss_pred CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCc
Confidence 99999999762 457999999999999999 3444555555 778999999999998 777765 89999999999
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i 656 (1130)
++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.||.|
T Consensus 215 ~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 215 GDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp CCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSCE
T ss_pred hhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCcE
Confidence 999999998766 89999999999 699999999999999999999998887654 799999999998 6679999999
Q ss_pred EEEEcCCC
Q 001184 657 KILANADG 664 (1130)
Q Consensus 657 ~iw~~~~~ 664 (1130)
++|++.++
T Consensus 290 ~iw~~~~~ 297 (313)
T 3odt_A 290 RIFSQEKS 297 (313)
T ss_dssp EEEESCGG
T ss_pred EEEeCCCC
Confidence 99999876
No 60
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.4e-33 Score=322.43 Aligned_cols=294 Identities=14% Similarity=0.172 Sum_probs=249.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC----
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---- 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---- 420 (1130)
+|.+.|++++|+| + +|++|+.||.|+|||+.+++...... ....+.+|...|.+++|+|+
T Consensus 14 ~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~~ 77 (397)
T 1sq9_A 14 AHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDVLQAIERD 77 (397)
T ss_dssp CSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEEEEEEETT
T ss_pred hhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEEecccccC
Confidence 5999999999999 4 69999999999999999877211000 01146699999999999999
Q ss_pred C---CEEEEEeCCCeEEEEEecCCccce--eeeeeecC-----CCCeeEEEEe----cCCCceE-EEEEcCCCcEEEEe-
Q 001184 421 G---NFIGVAFTKHLIHLYTYQGSNDLC--QSLEIDAH-----VGGVNDLAFS----YPNKQLC-IVTCGDDKLIRVWD- 484 (1130)
Q Consensus 421 g---~~las~~~d~~i~vwd~~~~~~~~--~~~~~~~h-----~~~V~~i~~s----~d~~~l~-l~s~s~d~~v~iwd- 484 (1130)
| ++|++++.|+.|++||+.+++... ....+.+| ...|.+++|+ |+++ + |++++.|+.|++||
T Consensus 78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 78 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTYIWKF 155 (397)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEEEEEE
T ss_pred CccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEEEEeC
Confidence 9 999999999999999999887510 02356777 5899999999 9999 7 99999999999999
Q ss_pred cC------CCeee-----Ee-------cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC---C---
Q 001184 485 LS------GRKLF-----QF-------EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA---P--- 540 (1130)
Q Consensus 485 ~~------~~~~~-----~~-------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~--- 540 (1130)
.+ ++.+. .+ ..|...|.+++|++ ++ ++++++.||.|++||+++......+.. |
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN 232 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred CccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence 66 66666 77 44899999999965 55 999999999999999999888888887 7
Q ss_pred CccEEEEEEecCCCeEEEeeecCCCC---cEEEEeeCCCCceeEEEec-------------ccCceeEEEEEcCCCCEEE
Q 001184 541 GLWCTTMLYSADGSRLFSCGTSKEGD---SHLVEWNESEGALKRTYIG-------------FRKKSAGVVQFDTTRNRIL 604 (1130)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~ 604 (1130)
...+.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |.. .+.+++|+|++++|+
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGETLC 307 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSSSEEE
T ss_pred CCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECCCCCEEE
Confidence 889999999999999999986 7 8999999999999999987 555 899999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeEEEe------cc-------------CCCCCcceEEEcCCC----------CEEEEEeCCCc
Q 001184 605 AAGEDNQIKFWDMDNVNMLTSTE------AE-------------GGLPSLPRLRFNKEG----------NLLVVTTADQG 655 (1130)
Q Consensus 605 ~~~~dg~i~vwd~~~~~~~~~~~------~~-------------~~~~~i~~v~~s~~~----------~~l~~~~~dg~ 655 (1130)
+++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|++++.||.
T Consensus 308 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~ 387 (397)
T 1sq9_A 308 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS 387 (397)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred EEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCc
Confidence 99999999999999999999888 43 014589999999998 79999999999
Q ss_pred EEEEEcCCC
Q 001184 656 IKILANADG 664 (1130)
Q Consensus 656 i~iw~~~~~ 664 (1130)
|++|++.++
T Consensus 388 i~iw~~~~g 396 (397)
T 1sq9_A 388 IRWFREAGG 396 (397)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEcCCC
Confidence 999998765
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.2e-32 Score=319.21 Aligned_cols=276 Identities=19% Similarity=0.301 Sum_probs=241.6
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
.+|.+.|.. +++++|+ +|++|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+ +++
T Consensus 115 ~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~--~~~ 171 (445)
T 2ovr_B 115 KGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR--DNI 171 (445)
T ss_dssp ECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--TTE
T ss_pred cccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--CCE
Confidence 358877543 3556687 59999999999999999988765 477999999999998 679
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEE
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 502 (1130)
|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++|| .+++.+..+.+|...|.+
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 244 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 244 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE
T ss_pred EEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEE
Confidence 9999999999999999987554 678999999999996 45 799999999999999 889999999999999999
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
+++ ++.++++++.||.|++||+++......+..+...|.++.| ++.++++++. ++.|++||+.+++.+..
T Consensus 245 ~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 245 VQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNCIHT 314 (445)
T ss_dssp EEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred EEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCEEEE
Confidence 988 4578999999999999999999988899999999999999 8899999986 89999999999999999
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC-CCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-GLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
+.+|.. .+.++.+ +++++++|+.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||.|++||+
T Consensus 315 ~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 315 LTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 988765 6666666 56799999999999999999999998887632 45578999996 679999999999999999
Q ss_pred CCC
Q 001184 662 ADG 664 (1130)
Q Consensus 662 ~~~ 664 (1130)
.++
T Consensus 390 ~~~ 392 (445)
T 2ovr_B 390 KTG 392 (445)
T ss_dssp TTC
T ss_pred CCC
Confidence 876
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.8e-32 Score=322.33 Aligned_cols=279 Identities=18% Similarity=0.252 Sum_probs=242.3
Q ss_pred eccCCCCE-EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 343 TMHQGSSV-VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 343 ~~~h~~~V-~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
..+|...| .++.| +++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|++
T Consensus 117 l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~-------------------~~~~h~~~V~~l~~~~~~ 174 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLL-------------------QLSGHDGGVWALKYAHGG 174 (464)
T ss_dssp EECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEE-------------------EECCCSSCEEEEEECSTT
T ss_pred EcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEE-------------------EEeCCCcCEEEEEEcCCC
Confidence 34587775 66666 455 69999999999999999988765 477999999999999998
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec--CCCceEEEEEcCCCcEEEEe-cCCC----------
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLIRVWD-LSGR---------- 488 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~--d~~~l~l~s~s~d~~v~iwd-~~~~---------- 488 (1130)
+|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++|| .++.
T Consensus 175 -~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 248 (464)
T 3v7d_B 175 -ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248 (464)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------CC
T ss_pred -EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccccCC
Confidence 99999999999999999987554 6789999999999995 556 899999999999999 4443
Q ss_pred -------------eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCe
Q 001184 489 -------------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSR 555 (1130)
Q Consensus 489 -------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1130)
.+..+.+|...|.++.. ++.++++++.||.|++||+++.+....+..|...|.+++|+|++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 249 YPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR 324 (464)
T ss_dssp SSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTE
T ss_pred cceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCE
Confidence 25567889999998843 4579999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCc
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i 635 (1130)
+++++. ++.|++||+.+++.+..+.+|.. .+.+++++ ++++++++.||.|++||+.++......... ..+
T Consensus 325 l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---~~~ 394 (464)
T 3v7d_B 325 CISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT---NLS 394 (464)
T ss_dssp EEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT---TCC
T ss_pred EEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC---CCc
Confidence 999986 89999999999999999998766 78899987 589999999999999999998776665422 257
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 636 PRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 636 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
..++|+++++++++++ ||.|++||+.++
T Consensus 395 ~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 395 AITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp CEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred cEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 8889999999999998 899999999877
No 63
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-32 Score=308.91 Aligned_cols=299 Identities=20% Similarity=0.314 Sum_probs=245.7
Q ss_pred eecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCccc--eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 404 IVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDL--CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
+++||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 58899999999999997 689999999999999999876532 23446789999999999999999 89999999999
Q ss_pred EEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecCC--CeE
Q 001184 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADG--SRL 556 (1130)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~--~~l 556 (1130)
++|+ ..+........+...+..+.+.+ ++.+|++++.|+.+++||........ ....+...+..++|++++ .++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 9999 77777778888888888888754 45789999999999999987665443 455677889999999875 456
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcc
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~ 636 (1130)
++++. ++.|++||..+++.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+.+.+..+..+. .+.
T Consensus 189 ~s~~~----d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~ 260 (340)
T 4aow_A 189 VSCGW----DKLVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---IIN 260 (340)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEcC----CCEEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eEE
Confidence 66664 88999999999999999998766 89999999999999999999999999999999988887553 689
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcc
Q 001184 637 RLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPST 716 (1130)
Q Consensus 637 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~ 716 (1130)
++.|+|++.++ +++.|+.|++||+..+. ....+.....
T Consensus 261 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~-~~~~~~~~~~---------------------------------------- 298 (340)
T 4aow_A 261 ALCFSPNRYWL-CAATGPSIKIWDLEGKI-IVDELKQEVI---------------------------------------- 298 (340)
T ss_dssp EEEECSSSSEE-EEEETTEEEEEETTTTE-EEEEECCC------------------------------------------
T ss_pred eeecCCCCcee-eccCCCEEEEEECCCCe-EEEeccccce----------------------------------------
Confidence 99999988655 56679999999987652 1111110000
Q ss_pred cccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeec
Q 001184 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKW 796 (1130)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 796 (1130)
. .....|...|.+++|+|+|+.|++++.||.|++|++
T Consensus 299 ----------------------------------------~---~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 299 ----------------------------------------S---TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ------------------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ----------------------------------------e---eeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 0 000237889999999999999999999999999997
Q ss_pred CCC
Q 001184 797 NRT 799 (1130)
Q Consensus 797 ~~~ 799 (1130)
.++
T Consensus 336 ~tG 338 (340)
T 4aow_A 336 TIG 338 (340)
T ss_dssp EC-
T ss_pred CCc
Confidence 654
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-32 Score=323.01 Aligned_cols=320 Identities=19% Similarity=0.323 Sum_probs=270.3
Q ss_pred eecCCCccE-EEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001184 404 IVKDSSISV-SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1130)
Q Consensus 404 ~~~~h~~~V-~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~i 482 (1130)
.+.+|...| .++.+ ++++|++|+.||+|++||+.+++.+. .+.+|.+.|++++|++++ .+++|+.|++|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 467888775 66665 67899999999999999999987554 678999999999999887 5899999999999
Q ss_pred Ee-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce-----------------------eeec
Q 001184 483 WD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-----------------------VDYD 538 (1130)
Q Consensus 483 wd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------------~~~~ 538 (1130)
|| .+++.+..+.+|...|.+++|.+.+++.++++++.||.|++||+++.... ..+.
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 99 88999999999999999999998888899999999999999999876532 2455
Q ss_pred CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
.+...+.++ +++++++++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|+++++++|+.||.|++||+.
T Consensus 268 ~~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 268 GHMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLE 340 (464)
T ss_dssp CCSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred CccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 566666665 788999999986 89999999999999999998766 89999999999999999999999999999
Q ss_pred CCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccc
Q 001184 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1130)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1130)
+++.+..+..+.. .|.+++|+ +.++++++.||.|++||+.++...
T Consensus 341 ~~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~------------------------------- 385 (464)
T 3v7d_B 341 NGELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK------------------------------- 385 (464)
T ss_dssp TTEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE-------------------------------
T ss_pred CCcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee-------------------------------
Confidence 9999998876654 78999997 579999999999999998654100
Q ss_pred ccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEecc
Q 001184 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1130)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1130)
T Consensus 386 -------------------------------------------------------------------------------- 385 (464)
T 3v7d_B 386 -------------------------------------------------------------------------------- 385 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEE
Q 001184 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSL 858 (1130)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~i 858 (1130)
... .+...+..++++++++++++++||.|++
T Consensus 386 ----~~~---------------------------------------------~~~~~~~~~~~~~~~~~l~~~~dg~i~i 416 (464)
T 3v7d_B 386 ----FSY---------------------------------------------HHTNLSAITTFYVSDNILVSGSENQFNI 416 (464)
T ss_dssp ----EEE---------------------------------------------ECTTCCCEEEEEECSSEEEEEETTEEEE
T ss_pred ----eee---------------------------------------------cCCCCccEEEEEeCCCEEEEecCCeEEE
Confidence 000 1234456788999999999999999999
Q ss_pred EECCCceeEEE-EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001184 859 FNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1130)
Q Consensus 859 wd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~ 904 (1130)
||+.+++.+.. +..|...|.+++|+ ++.++++++.||.+.+|-+
T Consensus 417 wd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 417 YNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred EECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence 99999999886 56788899999997 4677777788887666544
No 65
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.2e-32 Score=317.90 Aligned_cols=316 Identities=19% Similarity=0.331 Sum_probs=272.2
Q ss_pred eeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEE
Q 001184 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1130)
Q Consensus 449 ~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd 527 (1130)
.+.+|.+.|.. +++++++ ++++|+.||+|++|| .+++.+..+.+|...|.+++|+ +.++++++.||+|++||
T Consensus 113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEEEE
T ss_pred EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEEEE
Confidence 57889887533 3555677 899999999999999 8899999999999999999985 36899999999999999
Q ss_pred ccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe
Q 001184 528 YDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1130)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1130)
+.+++....+..|...|.++.|+ ++.+++++. ++.|++||+.+++.+..+.+|.. .+.++.+ +++++++|+
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEc
Confidence 99999888999999999999995 567888886 89999999999999999998766 7888888 788999999
Q ss_pred CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccc
Q 001184 608 EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1130)
Q Consensus 608 ~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1130)
.||.|++||+.+++.+..+..+.. .|.++.| ++.++++++.|+.|++||+.++. ....
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~----------------- 314 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHT----------------- 314 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEE-----------------
T ss_pred CCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEE-----------------
Confidence 999999999999999888876544 7899998 78899999999999999986541 0000
Q ss_pred cccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCc
Q 001184 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSA 767 (1130)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 767 (1130)
T Consensus 315 -------------------------------------------------------------------------------- 314 (445)
T 2ovr_B 315 -------------------------------------------------------------------------------- 314 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCE
Q 001184 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1130)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1130)
+ .+|...+.++.+ ++++
T Consensus 315 --------------------------~-----------------------------------~~~~~~v~~~~~--~~~~ 331 (445)
T 2ovr_B 315 --------------------------L-----------------------------------TGHQSLTSGMEL--KDNI 331 (445)
T ss_dssp --------------------------E-----------------------------------CCCCSCEEEEEE--ETTE
T ss_pred --------------------------E-----------------------------------cCCcccEEEEEE--eCCE
Confidence 0 024455566655 4668
Q ss_pred EEEEe-CCeEEEEECCCceeEEEEeC---CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEE-----ecCCC
Q 001184 848 VMSAG-GGKVSLFNMMNFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-----KGHQK 918 (1130)
Q Consensus 848 la~~~-dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-----~~h~~ 918 (1130)
+++++ ||.|++||+.+++.+..+.. |...|.+++|++ .+|++|+.||.|++||+.+++.+..+ .+|.+
T Consensus 332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 408 (445)
T 2ovr_B 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 408 (445)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc
Confidence 88887 89999999999999999986 788899999954 69999999999999999999999888 47889
Q ss_pred CeeEEEEccCCCeEEEEeCCCc----EEEEECCC
Q 001184 919 HITGLAFSTNLNILVSSGSDAQ----LIFWNTDT 948 (1130)
Q Consensus 919 ~V~~l~~s~dg~~L~s~s~Dg~----i~vwd~~~ 948 (1130)
.|++++|+|++.+|++++.||+ |.+||++.
T Consensus 409 ~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 409 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999999999999999998 99999986
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.8e-33 Score=316.87 Aligned_cols=293 Identities=15% Similarity=0.103 Sum_probs=245.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCc--eeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE--RLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
|.+.|++++|+|+|+ +|++|+.|+.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 889999999999998 58999999999999999876 332 46789999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCe---e-eEecCCCc
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK---L-FQFEGHEA 498 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~---~-~~~~~h~~ 498 (1130)
|++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++ ++++++.|+.|++|| ..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999998876332 334578999999999999999 899999999999999 55542 2 33467899
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEcc------------------CCcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD------------------NVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
.|.+++|++ ++.+|++++.||.|++||++ .......+..+...+.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999976 55799999999999999954 4566667778888999999999999999998
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CceeE--E-----------
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN--VNMLT--S----------- 625 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~--~----------- 625 (1130)
. ++.|++||+.+++.+..+..|.. .+.+++|+|++.+++++ .|+.|++|++.+ ++... .
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 6 89999999999999999998755 79999999999877777 899999999987 42100 0
Q ss_pred -----------------------Eec-cCCCCCcceEEEc-CCC---CEEEEEeCCCcEEEEEcCCCchhhh
Q 001184 626 -----------------------TEA-EGGLPSLPRLRFN-KEG---NLLVVTTADQGIKILANADGLRALR 669 (1130)
Q Consensus 626 -----------------------~~~-~~~~~~i~~v~~s-~~~---~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1130)
... .++...|.+++|+ ++| .+|++++.||.|++|++.++.+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 111 2455689999866 676 9999999999999999977644433
No 67
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=316.60 Aligned_cols=289 Identities=12% Similarity=0.202 Sum_probs=240.5
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeC---cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCG---DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD- 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd- 420 (1130)
+|...|++++|+|++++++++|+. ||.|+|||+.+++.... ...+|...|.+++|+|+
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCGTFGATS 77 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEEECTTCC
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEEEEcCCC
Confidence 499999999999999878888887 99999999998876531 23378899999999999
Q ss_pred --CCEEEEEeCCCeEEEEEecCCc-cceeeeeeecCCCCeeEEEE------ecCCCceEEEEEcCCCcEEEEe-cCCC-e
Q 001184 421 --GNFIGVAFTKHLIHLYTYQGSN-DLCQSLEIDAHVGGVNDLAF------SYPNKQLCIVTCGDDKLIRVWD-LSGR-K 489 (1130)
Q Consensus 421 --g~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~V~~i~~------s~d~~~l~l~s~s~d~~v~iwd-~~~~-~ 489 (1130)
|++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++|| .+++ .
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSC
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCc
Confidence 7999999999999999999886 333 57899999999955 67888 899999999999999 6665 6
Q ss_pred eeEecCCCc----CEEEEeecc--cCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec---CCCeEEEee
Q 001184 490 LFQFEGHEA----PVYSVCPHQ--KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA---DGSRLFSCG 560 (1130)
Q Consensus 490 ~~~~~~h~~----~v~~~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~ 560 (1130)
+..+..|.+ .+.+++|.+ ++++.++++++.||.|++||+++...... ..+...+.+++|+| +++++++++
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~ 231 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATS 231 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEEC
Confidence 777776655 888888432 45678999999999999999998776443 45677899999999 999999998
Q ss_pred ecCCCCcEEEEeeCCCCceeEEEe-----cccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc-------------
Q 001184 561 TSKEGDSHLVEWNESEGALKRTYI-----GFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVN------------- 621 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~------------- 621 (1130)
. ++.|++||+++++....+. +|.. .+.+++|+|+++ ++++++.||.|++||+..+.
T Consensus 232 ~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 232 L----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp S----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred C----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence 6 8999999998877665554 6554 899999999998 89999999999999997643
Q ss_pred ------eeEEEeccCCCCCcceEEEcCCCCEEE-EEeCCCcEEEEEcCCC
Q 001184 622 ------MLTSTEAEGGLPSLPRLRFNKEGNLLV-VTTADQGIKILANADG 664 (1130)
Q Consensus 622 ------~~~~~~~~~~~~~i~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~ 664 (1130)
.+..+..+ ...|.+++|+|++++|+ +++.|+.|++|++.+.
T Consensus 307 ~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 307 VAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 34445544 44899999999999998 7999999999998765
No 68
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.9e-33 Score=319.29 Aligned_cols=290 Identities=15% Similarity=0.244 Sum_probs=242.8
Q ss_pred cCCCCEEEEEEecC---CCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-
Q 001184 345 HQGSSVVSMDFHPF---HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD- 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspd---g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd- 420 (1130)
+|...|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCC
Confidence 59999999999995 444566666677999999998776542 1 11112347789999999999
Q ss_pred ---CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-cCCCeeeEe--
Q 001184 421 ---GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-- 493 (1130)
Q Consensus 421 ---g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~-d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~-- 493 (1130)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++|| .+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999887554 5788999999999999 777 899999999999999 778888887
Q ss_pred -cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec----------------------------CCCccE
Q 001184 494 -EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD----------------------------APGLWC 544 (1130)
Q Consensus 494 -~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----------------------------~~~~~v 544 (1130)
.+|...|.+++|++ ++.+|++++.||.|++||+++......+. .+...|
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 78999999999976 55799999999999999998765443322 277889
Q ss_pred EEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce--------------eEEEecccCceeEEEEEcCC--CCEEEEEeC
Q 001184 545 TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--------------KRTYIGFRKKSAGVVQFDTT--RNRILAAGE 608 (1130)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~ 608 (1130)
.+++|+ ++++++++. ++.|++||+.++.. +..+.+|.. .+.+++|+|+ +++|++|+.
T Consensus 235 ~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999999 778998876 89999999987644 677777655 7889999999 999999999
Q ss_pred CCcEEEEeCCCCce----eEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 609 DNQIKFWDMDNVNM----LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 609 dg~i~vwd~~~~~~----~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
||.|++||+.+++. ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999998763 3466666445689999999999999999999999999975
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=323.42 Aligned_cols=352 Identities=14% Similarity=0.162 Sum_probs=248.3
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeEEEec-----------cCCCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEA-----------EGGLP 633 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~ 633 (1130)
+..+++|+...++....+.+|.. .|.+++|+| ++++|++|+.||.|++||+.+++....+.. ..+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 45577888888888888888765 899999999 999999999999999999998765544431 12455
Q ss_pred CcceEEEcC-CCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCC
Q 001184 634 SLPRLRFNK-EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPA 712 (1130)
Q Consensus 634 ~i~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~ 712 (1130)
.|.+++|+| ++.++++++.||.|++||+.++.. ...
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~------------------------------------------ 137 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADV------------------------------------------ 137 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEE------------------------------------------
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-cee------------------------------------------
Confidence 899999999 788999999999999999865410 000
Q ss_pred CCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEE
Q 001184 713 RPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK 792 (1130)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 792 (1130)
T Consensus 138 -------------------------------------------------------------------------------- 137 (408)
T 4a11_B 138 -------------------------------------------------------------------------------- 137 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec---CCCEEEEEe-CCeEEEEECCCceeEE
Q 001184 793 LWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK---NDSYVMSAG-GGKVSLFNMMNFKVMT 868 (1130)
Q Consensus 793 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~---dg~~la~~~-dg~i~iwd~~~~~~~~ 868 (1130)
+ .+...+.++++++ ++.++++++ +|.|++||+.+++.+.
T Consensus 138 -~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 138 -F------------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp -E------------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE
T ss_pred -c------------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee
Confidence 0 0233445555655 455888887 8999999999999999
Q ss_pred EEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe-EEEEE---------------ecCCCCeeEEEEccCCCeE
Q 001184 869 TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-VKTKL---------------KGHQKHITGLAFSTNLNIL 932 (1130)
Q Consensus 869 ~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~s~dg~~L 932 (1130)
.+..|...|.+++|+|++..++++|+.||.|++||+.++. .+..+ .+|...|.+++|+|++++|
T Consensus 181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260 (408)
T ss_dssp EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence 9999999999999999444479999999999999998764 44444 5789999999999999999
Q ss_pred EEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCe
Q 001184 933 VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPI 1012 (1130)
Q Consensus 933 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v 1012 (1130)
++++.||.|++||+.+++..........................+.+++++.++.+++||+.+++.+..+..| ...|
T Consensus 261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~v 337 (408)
T 4a11_B 261 LTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH---YKTV 337 (408)
T ss_dssp EEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC---SSCE
T ss_pred EEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC---CCeE
Confidence 9999999999999998765433222222222222333444455677777789999999999999999998766 7899
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1013 SSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1013 ~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
++++|+|++++|++++.||.|++||+.+++.+....... ....+.+.....+.+++.|+.+++|+.
T Consensus 338 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 338 DCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT--------------TKSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------------------
T ss_pred EEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE--------------eccccccccceeecccCccCceeecCC
Confidence 999999999999999999999999999998765544211 112233444567778888999999987
Q ss_pred CCC
Q 001184 1093 SET 1095 (1130)
Q Consensus 1093 ~~~ 1095 (1130)
..-
T Consensus 404 ~~~ 406 (408)
T 4a11_B 404 PQF 406 (408)
T ss_dssp ---
T ss_pred ccc
Confidence 643
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=304.42 Aligned_cols=320 Identities=17% Similarity=0.235 Sum_probs=263.6
Q ss_pred eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEE
Q 001184 534 RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1130)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1130)
...+.+|...|++++|+|++++|++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.||.|+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSK----DSSASVWYSLNGERLGTLDGHTG-TIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEES----SSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTTEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeC----CCEEEEEeCCCchhhhhhhhcCC-cEEEEEEcCCCCEEEEEeCCCeEE
Confidence 3457789999999999999999999986 89999999999999999998766 899999999999999999999999
Q ss_pred EEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC-----CcEEEEEcCCCchhhhhhccccccccccccccccc
Q 001184 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD-----QGIKILANADGLRALRAIETRAYETSRASTEMKVP 688 (1130)
Q Consensus 614 vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1130)
+||+.+++.+..+.. ...+.+++|+|+++++++++.+ +.|++|++...... ..+..
T Consensus 100 iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~-~~~~~--------------- 160 (369)
T 3zwl_B 100 LWDVSNGQCVATWKS---PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT-HELTK--------------- 160 (369)
T ss_dssp EEETTTCCEEEEEEC---SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTT-CCEEE---------------
T ss_pred EEECCCCcEEEEeec---CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccc-eeecc---------------
Confidence 999999999888873 2379999999999999999999 99999998655110 00000
Q ss_pred ccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCcc
Q 001184 689 GSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSAS 768 (1130)
Q Consensus 689 ~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1130)
. ...
T Consensus 161 ----------------------------------------------------------~------------------~~~ 164 (369)
T 3zwl_B 161 ----------------------------------------------------------V------------------SEE 164 (369)
T ss_dssp ----------------------------------------------------------E------------------CSS
T ss_pred ----------------------------------------------------------c------------------ccc
Confidence 0 000
Q ss_pred ceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCC--CCceeEEEEecCCC
Q 001184 769 KVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA--EDVVPCVALSKNDS 846 (1130)
Q Consensus 769 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~i~~l~~s~dg~ 846 (1130)
.+ ..+ ..+ ...+.+++|+|+++
T Consensus 165 ~~--------------------~~~------------------------------------~~~~~~~~~~~~~~~~~~~ 188 (369)
T 3zwl_B 165 PI--------------------HKI------------------------------------ITHEGLDAATVAGWSTKGK 188 (369)
T ss_dssp CS--------------------EEE------------------------------------ECCTTCCCEEEEEECGGGC
T ss_pred ee--------------------eec------------------------------------cCCcCccceeEEEEcCCCC
Confidence 00 000 012 33789999999999
Q ss_pred EEEEEe-CCeEEEEECCC-ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEE
Q 001184 847 YVMSAG-GGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1130)
Q Consensus 847 ~la~~~-dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 924 (1130)
++++++ +|.|++||+.+ ++.+..+..|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+. +...+.+++
T Consensus 189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~ 266 (369)
T 3zwl_B 189 YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAV 266 (369)
T ss_dssp EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEE
Confidence 999988 89999999998 788999999999999999999 89999999999999999999999988888 778899999
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeec
Q 001184 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVP 1004 (1130)
Q Consensus 925 ~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 1004 (1130)
|+|+++++++++.++...+|...... ....+++||..+++.+..+..
T Consensus 267 ~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------------~~~~i~~~d~~~~~~~~~~~~ 313 (369)
T 3zwl_B 267 ITPLKEFIILGGGQEAKDVTTTSANE---------------------------------GKFEARFYHKIFEEEIGRVQG 313 (369)
T ss_dssp ECSSSSEEEEEECCC----------------------------------------------CEEEEEETTTCCEEEEEEC
T ss_pred ecCCCceEEEeecCCCceEEEEecCC---------------------------------CcceeEEEecCCCcchhheec
Confidence 99999999999999988777655411 123689999999999998877
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccccc
Q 001184 1005 QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 1005 ~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
+ ...|++++|+||+++|++++.||.|++|++.++.....+
T Consensus 314 ~---~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 314 H---FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp C---SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred c---cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 6 789999999999999999999999999999987655444
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1e-32 Score=311.10 Aligned_cols=300 Identities=14% Similarity=0.120 Sum_probs=229.3
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcC-------eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDG-------EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
-+.+|+|++|+|||+ +||+|+.+. .|+||++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 456899999999998 689887543 5999999876543211111 01112467899999888775
Q ss_pred CCCCEEEEE-----------eCCCeEEEEEecCCccceee------eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001184 419 PDGNFIGVA-----------FTKHLIHLYTYQGSNDLCQS------LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 419 pdg~~las~-----------~~d~~i~vwd~~~~~~~~~~------~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~ 481 (1130)
++.+++| +.|+.+++|++.++...... .....+...+.+++|||||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 4566655 45788999999876432211 1123345668999999999965556777899999
Q ss_pred EEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee--eecCCCccEEEEEEecCCCeEEE
Q 001184 482 VWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV--DYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 482 iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
||| .+++++..+. |...|.+++|+| ++.++++++. +.+++|+..++.... ....+...+.+++|+|+++++++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 999 8888888875 788999999965 6688988885 556677766666554 33456778999999999999999
Q ss_pred eeecCCCCcEEEEeeCCCCce----eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEE-eccCCCC
Q 001184 559 CGTSKEGDSHLVEWNESEGAL----KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST-EAEGGLP 633 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~ 633 (1130)
++.++.....+++|+...... ...+.+|.. .|.+++|+|+|++|++|+.|+.|+|||+.+++++..+ ..| ..
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~ 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence 987544445788999876543 345566555 7999999999999999999999999999999988875 444 44
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 634 SLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 634 ~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
.|++++|+|||++|++++.|++|+||++..+
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999765
No 72
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-32 Score=311.89 Aligned_cols=291 Identities=16% Similarity=0.257 Sum_probs=243.6
Q ss_pred ccCCCC--EEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 344 MHQGSS--VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 344 ~~h~~~--V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
-+|... +.+++|++ .. +++++.||.|+|||+.+++.... ....|...|.+++|+|++
T Consensus 88 ~~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~ 146 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDG 146 (401)
T ss_dssp TTCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTS
T ss_pred CCCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCC
Confidence 345555 44555655 44 56777899999999999887642 223488999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c-CCCeeeEecCCCcC
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L-SGRKLFQFEGHEAP 499 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~-~~~~~~~~~~h~~~ 499 (1130)
++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++++.|+.|++|| . .+..+..+.+|.+.
T Consensus 147 ~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 219 (401)
T 4aez_A 147 SFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE 219 (401)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred CEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCC
Confidence 999999999999999999887554 577999999999994 45 799999999999999 4 57778899999999
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
|.+++|++ ++.+|++++.|+.|++||+++......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.
T Consensus 220 v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 220 VCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGAR 296 (401)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCE
T ss_pred eeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCE
Confidence 99999976 5689999999999999999998888888889999999999998866655431 12389999999999999
Q ss_pred eEEEecccCceeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 580 KRTYIGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
+..+.. ...+.+++|+|+++++++++ .||.|++||+.+++........++...|.+++|+|++++|++++.||.|+
T Consensus 297 ~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 297 VNTVDA--GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLK 374 (401)
T ss_dssp EEEEEC--SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred EEEEeC--CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 988864 33799999999999999954 89999999999987777655555666899999999999999999999999
Q ss_pred EEEcCCCchh
Q 001184 658 ILANADGLRA 667 (1130)
Q Consensus 658 iw~~~~~~~~ 667 (1130)
+|++.++...
T Consensus 375 iw~~~~~~~~ 384 (401)
T 4aez_A 375 FWRVYDGDHV 384 (401)
T ss_dssp EEECCC----
T ss_pred EEECCCCccc
Confidence 9999887433
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-31 Score=306.50 Aligned_cols=306 Identities=15% Similarity=0.257 Sum_probs=249.1
Q ss_pred EeeCCCCceeEEEecccCceeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CCCEEE
Q 001184 571 EWNESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLV 648 (1130)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~ 648 (1130)
+|+....+....+.+|.. .|.+++|+|++ ++|++|+.||.|++||+.+++....+...++...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 455566677778888766 89999999999 899999999999999999999888887656666899999999 789999
Q ss_pred EEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCC
Q 001184 649 VTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI 728 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1130)
+++.|+.|++||+.... ...
T Consensus 136 s~~~d~~i~iwd~~~~~--~~~---------------------------------------------------------- 155 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGSV--IQV---------------------------------------------------------- 155 (383)
T ss_dssp EEETTTEEEEEETTSCE--EEE----------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCCc--eEE----------------------------------------------------------
Confidence 99999999999975320 000
Q ss_pred CCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccc
Q 001184 729 EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1130)
Q Consensus 729 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1130)
+.
T Consensus 156 -----------------------------------------------------------------~~------------- 157 (383)
T 3ei3_B 156 -----------------------------------------------------------------FA------------- 157 (383)
T ss_dssp -----------------------------------------------------------------EE-------------
T ss_pred -----------------------------------------------------------------Ee-------------
Confidence 00
Q ss_pred cccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCC
Q 001184 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1130)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~ 887 (1130)
....+...|.+++|+|++++|++++ |+.|++||+ +++.+..+..|...|.+++|+| ++
T Consensus 158 -------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~ 216 (383)
T 3ei3_B 158 -------------------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RC 216 (383)
T ss_dssp -------------------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SC
T ss_pred -------------------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CC
Confidence 0013567789999999999999998 899999999 5778889999999999999999 66
Q ss_pred c-EEEEEeCCCcEEEEEeec----CeEEEEEecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEECCCCcccceeeEeccC
Q 001184 888 N-IIAIGMEDSTIQIYNVRV----DEVKTKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA 961 (1130)
Q Consensus 888 ~-~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 961 (1130)
. +|++++.|+.|++||+.+ +.++..+ +|...|++++|+| ++++|++++.|+.|++||+.+++...........
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 295 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR 295 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc
Confidence 6 999999999999999998 6677766 6999999999999 9999999999999999999987765443322111
Q ss_pred C-CC----------CCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC
Q 001184 962 G-KL----------PVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1130)
Q Consensus 962 ~-~~----------~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D 1030 (1130)
. .+ ...+..++|+|++++ .++.|+.|++||+.+++.+..+..+. +...+.+++|+|||++|++|+ |
T Consensus 296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~-~~~~~~~~~~s~~g~~l~s~s-d 372 (383)
T 3ei3_B 296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPN-AAGIISLNKFSPTGDVLASGM-G 372 (383)
T ss_dssp CCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTT-BCSCCCEEEECTTSSEEEEEE-T
T ss_pred ccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCC-CCceEEEEEEecCccEEEEec-C
Confidence 0 01 123445666777766 44579999999999999998887642 367788889999999999997 9
Q ss_pred CcEEEEeCCC
Q 001184 1031 GSIGVFDADS 1040 (1130)
Q Consensus 1031 g~i~vwd~~~ 1040 (1130)
|.|++||+++
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 9999999874
No 74
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=320.74 Aligned_cols=311 Identities=13% Similarity=0.179 Sum_probs=248.0
Q ss_pred ccccCCCCCc----ccccCCcccceeeec--cCCCCEEEEEEec-CCCeEEEEEeCcCeEEEEeCCC---Cceeecccce
Q 001184 320 ATYPVPSQQA----TWSLDDLPRAVACTM--HQGSSVVSMDFHP-FHHTLLVVGCGDGEITLWDVGL---RERLVSKPFK 389 (1130)
Q Consensus 320 ~~~s~~~~~~----~~~~~~~~~~~~~~~--~h~~~V~~v~fsp-dg~~llasg~~dg~i~iwd~~~---~~~~~~~~~~ 389 (1130)
..|+|++... .|. ..++.+..+ +|.+.|++++|+| +++ +||+|+.||+|+|||+.+ +.....
T Consensus 33 ~~f~~~~~~~~~~~~w~---~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~---- 104 (437)
T 3gre_A 33 KEFGPIQEIVRSPNMGN---LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS---- 104 (437)
T ss_dssp GGGCCCCCCCCCCCGGG---CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC----
T ss_pred hhcCCcccccccccccc---ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce----
Confidence 3456666533 243 334555555 4889999999999 998 699999999999999976 331110
Q ss_pred eeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEec---CCccceee-------eeeec--CCCCe
Q 001184 390 IWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQ---GSNDLCQS-------LEIDA--HVGGV 457 (1130)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~---~~~~~~~~-------~~~~~--h~~~V 457 (1130)
....+|...|.+++|+|++++|++|+.||+|++||+. +++..... ..+.. +...+
T Consensus 105 -------------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 171 (437)
T 3gre_A 105 -------------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYA 171 (437)
T ss_dssp -------------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCE
T ss_pred -------------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCc
Confidence 0122589999999999999999999999999999995 54433211 01112 55667
Q ss_pred eEEE--EecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecC--CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc
Q 001184 458 NDLA--FSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG--HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG 532 (1130)
Q Consensus 458 ~~i~--~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 532 (1130)
.++. +++++. ++++++.|+.|++|| .+++.+..+.+ |...|.+++|++ ++.+|++++.||.|++||++...
T Consensus 172 ~~~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~ 247 (437)
T 3gre_A 172 VRMRAFVNEEKS--LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNV 247 (437)
T ss_dssp EEEEEEECSSCE--EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTTE
T ss_pred eEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCcc
Confidence 7777 456777 899999999999999 88999999998 899999999965 46899999999999999999988
Q ss_pred ceeeec-CCCccEEEEEEe----cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecc---------------------
Q 001184 533 SRVDYD-APGLWCTTMLYS----ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF--------------------- 586 (1130)
Q Consensus 533 ~~~~~~-~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--------------------- 586 (1130)
....+. .+...|.+++|+ +++.+|++++. ++.|++||+.+++.+..+.++
T Consensus 248 ~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (437)
T 3gre_A 248 LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNF 323 (437)
T ss_dssp EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCC
T ss_pred EEEEEecCCCCceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccccee
Confidence 777765 666789999665 46778998875 899999999999998888865
Q ss_pred ----cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC--------------------------------
Q 001184 587 ----RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-------------------------------- 630 (1130)
Q Consensus 587 ----~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------------------------------- 630 (1130)
+...+.+++|+ ++++|++|+.||.|++||+.+++....+..+.
T Consensus 324 ~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (437)
T 3gre_A 324 CGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDD 402 (437)
T ss_dssp CCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---------
T ss_pred cccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCc
Confidence 33357888999 77899999999999999999998877776531
Q ss_pred ---CCCCcceEEEcCC--CCEEEEEeCCCcEEEEE
Q 001184 631 ---GLPSLPRLRFNKE--GNLLVVTTADQGIKILA 660 (1130)
Q Consensus 631 ---~~~~i~~v~~s~~--~~~l~~~~~dg~i~iw~ 660 (1130)
+...|++++|+++ +.+|++|+.||.|+||+
T Consensus 403 ~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 403 SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 4568999999987 78999999999999995
No 75
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.5e-33 Score=321.09 Aligned_cols=304 Identities=16% Similarity=0.234 Sum_probs=231.2
Q ss_pred eeEEEecccCceeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CCCEEEEEeCCCcE
Q 001184 579 LKRTYIGFRKKSAGVVQFDTT-RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLVVTTADQGI 656 (1130)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~~~~dg~i 656 (1130)
......+|.. .|++++|+|. +++|++|+.||.|+|||+.+++....+...+|...|.+++|+| ++.+|++++.||+|
T Consensus 111 ~~~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 111 ILQKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp SCCEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred ecccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 3344455444 7999999994 5689999999999999999888777776666777999999998 78999999999999
Q ss_pred EEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccc
Q 001184 657 KILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLED 736 (1130)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1130)
++||+..+.. ..+
T Consensus 190 ~iwd~~~~~~--~~~----------------------------------------------------------------- 202 (435)
T 4e54_B 190 RLQDFKGNIL--RVF----------------------------------------------------------------- 202 (435)
T ss_dssp EEEETTSCEE--EEE-----------------------------------------------------------------
T ss_pred EEeeccCCce--eEE-----------------------------------------------------------------
Confidence 9999754310 000
Q ss_pred cCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccc
Q 001184 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1130)
Q Consensus 737 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1130)
.
T Consensus 203 -----------------------------------------------~-------------------------------- 203 (435)
T 4e54_B 203 -----------------------------------------------A-------------------------------- 203 (435)
T ss_dssp -----------------------------------------------E--------------------------------
T ss_pred -----------------------------------------------e--------------------------------
Confidence 0
Q ss_pred cCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeC
Q 001184 817 QPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895 (1130)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~ 895 (1130)
....+...+.+++|+|++++|++|+ ||.|++||+.+ +.+..+.+|...|.+++|+|++..++++|+.
T Consensus 204 -----------~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 204 -----------SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp -----------CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred -----------ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 0001344567789999999999998 89999999864 5667788999999999999965678999999
Q ss_pred CCcEEEEEeecCeEEE---EEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEE
Q 001184 896 DSTIQIYNVRVDEVKT---KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972 (1130)
Q Consensus 896 dg~v~iwd~~~~~~~~---~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 972 (1130)
|+.|+|||+.+.+... ...+|...|++++|+|||++|++++.||+|++||+.+++......................
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 9999999998765433 3467999999999999999999999999999999998765443322211111112333455
Q ss_pred EcCCCcEEEEE-------------cCCcEEEEECCCceeeeeeecCCCCCCCeEEE-EECCCCCEEEEEeCCCcEEEEeC
Q 001184 973 FHSDQVRLLVN-------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSA-AYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 973 ~s~d~~~l~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v-~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
|+|++.+++++ .++.|++||..+++.+..+..+ |...|.++ +|+|||++|++|+ |+.|+|||+
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~--~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP--ESSGISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS--SCCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC--CCCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 66666655543 2457999999999998887544 36788887 6999999999876 889999999
Q ss_pred CCcccc
Q 001184 1039 DSLRLR 1044 (1130)
Q Consensus 1039 ~~~~~~ 1044 (1130)
++++..
T Consensus 429 ~~gk~r 434 (435)
T 4e54_B 429 QEARTR 434 (435)
T ss_dssp C-----
T ss_pred CcCeee
Confidence 988753
No 76
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.1e-32 Score=312.22 Aligned_cols=294 Identities=12% Similarity=0.122 Sum_probs=251.8
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc------ceeeecCCCccEEEEEEecC----C---CeE
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG------SRVDYDAPGLWCTTMLYSAD----G---SRL 556 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~s~~----~---~~l 556 (1130)
...+.+|.+.|++++|++ .+|++++.||.|++||++... ....+..|...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456779999999999976 699999999999999999887 67788889999999999999 9 999
Q ss_pred EEeeecCCCCcEEEEeeCCCCce-----eEEEeccc----CceeEEEEEc----CCCCE-EEEEeCCCcEEEEeCCC---
Q 001184 557 FSCGTSKEGDSHLVEWNESEGAL-----KRTYIGFR----KKSAGVVQFD----TTRNR-ILAAGEDNQIKFWDMDN--- 619 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~----~~~v~~~~~~----~~~~~-l~~~~~dg~i~vwd~~~--- 619 (1130)
++++. ++.|++||+.+++. ...+..|. ...+.+++|+ |++++ |++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99986 89999999998887 88888874 3489999999 99999 99999999999999998
Q ss_pred ---CceeE-----EEec-----cCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccccc
Q 001184 620 ---VNMLT-----STEA-----EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMK 686 (1130)
Q Consensus 620 ---~~~~~-----~~~~-----~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1130)
++.+. .+.. ..+...+.+++|+|++ ++++++.|+.|++||+.++. ....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~---------------- 222 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-PLYN---------------- 222 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-EEEE----------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc-eeEE----------------
Confidence 66655 6644 3445589999999999 99999999999999986541 0000
Q ss_pred ccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCC
Q 001184 687 VPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766 (1130)
Q Consensus 687 ~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 766 (1130)
T Consensus 223 -------------------------------------------------------------------------------- 222 (397)
T 1sq9_A 223 -------------------------------------------------------------------------------- 222 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCC---CCceeEEEEec
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA---EDVVPCVALSK 843 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---~~~i~~l~~s~ 843 (1130)
+. ...+| ...|.+++|+|
T Consensus 223 ---------------------------~~--------------------------------~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 223 ---------------------------FE--------------------------------SQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp ---------------------------EE--------------------------------CCC---CCCCCEEEEEECS
T ss_pred ---------------------------Ee--------------------------------ccccccccCCccceEEECC
Confidence 00 00025 77889999999
Q ss_pred CCCEEEEEe-C---CeEEEEECCCceeEEEEeC-------------CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001184 844 NDSYVMSAG-G---GKVSLFNMMNFKVMTTFMS-------------PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1130)
Q Consensus 844 dg~~la~~~-d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 906 (1130)
++++|++++ | |.|++||+.+++.+..+.. |...|.+++|+| ++.+|++++.||.|++||+.+
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence 999999988 7 8999999999999999998 999999999999 899999999999999999999
Q ss_pred CeEEEEEe------cC---------------CCCeeEEEEccCC----------CeEEEEeCCCcEEEEECCCC
Q 001184 907 DEVKTKLK------GH---------------QKHITGLAFSTNL----------NILVSSGSDAQLIFWNTDTW 949 (1130)
Q Consensus 907 ~~~~~~l~------~h---------------~~~V~~l~~s~dg----------~~L~s~s~Dg~i~vwd~~~~ 949 (1130)
++.+..+. +| ...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999999 88 9999999999998 79999999999999999874
No 77
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-33 Score=322.06 Aligned_cols=285 Identities=13% Similarity=0.085 Sum_probs=224.5
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCC--ceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR--ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
|.+.|++++|+|+|+ +||+|+.||.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 667999999999998 5999999999999999987 3332 46799999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCC---eeeEecC-CCc
Q 001184 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR---KLFQFEG-HEA 498 (1130)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~---~~~~~~~-h~~ 498 (1130)
|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++|| ..++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998773334446788999999999999999 799999999999999 5554 4677887 999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccC------------------CcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN------------------VGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
.|.+++|++ ++.+|++++.|+.|++||++. ......+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 999999976 558999999999999999853 2233344 7788899999999999999998
Q ss_pred ecCCCCcEEEEeeCCCCce----eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---------------
Q 001184 561 TSKEGDSHLVEWNESEGAL----KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN--------------- 621 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------- 621 (1130)
. ++.|++||+.+++. +..+.+|.. .+.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 6 89999999999987 778888765 79999999999999888766655 66654211
Q ss_pred ------------------------eeEEEec-----------cCCCCCcceEEEcCC-CC---EEEEEeCCCcEEEEEc
Q 001184 622 ------------------------MLTSTEA-----------EGGLPSLPRLRFNKE-GN---LLVVTTADQGIKILAN 661 (1130)
Q Consensus 622 ------------------------~~~~~~~-----------~~~~~~i~~v~~s~~-~~---~l~~~~~dg~i~iw~~ 661 (1130)
....... ..|...|.++.+.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 014557889886653 33 6999999999999985
No 78
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.8e-31 Score=308.46 Aligned_cols=282 Identities=15% Similarity=0.269 Sum_probs=239.5
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
-.+.++||+++ +||+|. |++|+|||+.+|+..... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999865 688876 899999999999876421 2457888999999999999999999
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEEEEeec
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPH 506 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~~~~~~ 506 (1130)
.||+|++||+.+++.+. .+.+|...|.+++++ +. ++++|+.|+.+++|| .....+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987655 678999999988875 55 899999999999999 4566778899999999999986
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcc----eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGS----RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
+ ++.++++++.|+.+++|+...... ......+...|.+++|+|++..+++.+ .+..|+.|++||+.+++....
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~-~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG-GGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEE-ECTTTCEEEEEETTTTEEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEE-eecCCCEEEEEeCCcccccee
Confidence 5 558999999999999999987653 345667788999999999776554332 123489999999999999988
Q ss_pred EecccCceeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
+..+. .+.++.|+++++.+++++ .|+.|+|||+.+++++..+..|.. .|.+++|+|+|++|++|+.|++|++||
T Consensus 317 ~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 317 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred ecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 88654 588889999999988865 789999999999999999887654 899999999999999999999999999
Q ss_pred cCCC
Q 001184 661 NADG 664 (1130)
Q Consensus 661 ~~~~ 664 (1130)
+...
T Consensus 393 v~~~ 396 (420)
T 4gga_A 393 CFEL 396 (420)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 8654
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.4e-32 Score=294.49 Aligned_cols=252 Identities=18% Similarity=0.269 Sum_probs=211.9
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~ 481 (1130)
++.+|.+.|.+++|+|||++||+|+.|++|+|||+.++. ......+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEE
Confidence 477999999999999999999999999999999997542 1223468899999999999864 77 899999999999
Q ss_pred EEe-cCC--CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc--eeeecCCCccEEEEEEecC----
Q 001184 482 VWD-LSG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSAD---- 552 (1130)
Q Consensus 482 iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~---- 552 (1130)
+|| .++ ..+..+.+|...|.+++|+|..++.+|++++.|++|++||++.... ...+..|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 999 555 3567788999999999998875578999999999999999987532 3566788889999999997
Q ss_pred ---------CCeEEEeeecCCCCcEEEEeeCCCCc----eeEEEecccCceeEEEEEcCCC---CEEEEEeCCCcEEEEe
Q 001184 553 ---------GSRLFSCGTSKEGDSHLVEWNESEGA----LKRTYIGFRKKSAGVVQFDTTR---NRILAAGEDNQIKFWD 616 (1130)
Q Consensus 553 ---------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd 616 (1130)
+++|++++. |+.|++||+.+++ ....+.+|.. .|.+++|+|++ ++|++++.|++|++||
T Consensus 161 ~~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ---------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 578999986 8999999998766 5667888766 89999999985 7999999999999999
Q ss_pred CCCCc---eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 617 MDNVN---MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 617 ~~~~~---~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+.+.. ....+....+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 98753 122232234455799999999999999999999999999753
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-31 Score=293.33 Aligned_cols=247 Identities=14% Similarity=0.228 Sum_probs=206.3
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCC--ceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR--ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD- 420 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd- 420 (1130)
.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+. .+.+|.+.|.+++|+|+
T Consensus 6 ~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~ 65 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK 65 (297)
T ss_dssp CSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGG
T ss_pred cCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCC
Confidence 36999999999999998 5999999999999999754 2222 57899999999999874
Q ss_pred -CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-cCCC--eeeEec
Q 001184 421 -GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGR--KLFQFE 494 (1130)
Q Consensus 421 -g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~iwd-~~~~--~~~~~~ 494 (1130)
|++||+|+.|++|++||+.+++. .....+.+|...|.+++|+|+ +. +|++++.|++|++|| .++. ....+.
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 142 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIID 142 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEE
T ss_pred cCCEEEEEcCCCEEEEEEcCCCce-EEEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeee
Confidence 89999999999999999988742 222357789999999999998 77 899999999999999 4442 246678
Q ss_pred CCCcCEEEEeecccC-----------CccEEEEEecCCcEEEEEccCCc----ceeeecCCCccEEEEEEecCC---CeE
Q 001184 495 GHEAPVYSVCPHQKE-----------NIHFIFSTAVDGKIKAWLYDNVG----SRVDYDAPGLWCTTMLYSADG---SRL 556 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l 556 (1130)
+|...|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++ ++|
T Consensus 143 ~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~l 222 (297)
T 2pm7_B 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYM 222 (297)
T ss_dssp CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEE
Confidence 999999999998752 35799999999999999998766 345678899999999999985 789
Q ss_pred EEeeecCCCCcEEEEeeCCCCc--eeE-EE--ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 557 FSCGTSKEGDSHLVEWNESEGA--LKR-TY--IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~--~~~-~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
++++. |+.|++||+.++. ... .+ ..+ ...+.+++|+|++++|++++.||.|++|+..
T Consensus 223 as~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 223 ASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEET----TSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEC----CCcEEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99886 8999999987643 122 22 233 3478999999999999999999999999976
No 81
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=310.30 Aligned_cols=316 Identities=11% Similarity=0.083 Sum_probs=244.3
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-...|.+++|||||+ ++|+++.|++|+ |...++ .+.+|...|.+++|+|||
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~----------------------~l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAK----------------------DINCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCS----------------------CCSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccc----------------------eecCCCccEEEEEECCCC----
Confidence 457999999999998 699999999999 644443 245899999999999999
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCc-----CE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEA-----PV 500 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~-----~v 500 (1130)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||.|++||..+ ++..+. |.. .|
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCE
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccE
Confidence 4665666654432211 22 5688999999999999 799999999999999544 777777 766 49
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcc-------eeee----cCCCccEEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-------RVDY----DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
.+++|+| +|++|++|+.||+|++||+..+.. ...+ .+|..+|.+++|+||| +++++. |+.|
T Consensus 133 ~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 9999965 668999999999999999988653 3344 5567799999999999 666664 8999
Q ss_pred EEeeCCCCce---eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE--cCCC
Q 001184 570 VEWNESEGAL---KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF--NKEG 644 (1130)
Q Consensus 570 ~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~--s~~~ 644 (1130)
++||+.++.. .+++..++...|..++|+ ++.+++++ ++.|++||+.+++....... +...+..++| +|++
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d~ 279 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKES 279 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSSC
T ss_pred EEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCCC
Confidence 9999988774 356643344589999999 68899887 69999999998877444333 4558999999 9999
Q ss_pred CEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCcc
Q 001184 645 NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSA 724 (1130)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1130)
..+++++.+|+ ++|..+.- +++|+
T Consensus 280 ~~La~a~edG~-klw~~d~~------------------------------~~spd------------------------- 303 (588)
T 2j04_A 280 TILLMSNKTSY-KVLLEDEL------------------------------HVTAD------------------------- 303 (588)
T ss_dssp EEEEECSSCEE-EEEESSSE------------------------------EEECC-------------------------
T ss_pred CEEEEEcCCCC-EEEeeccE------------------------------EECCC-------------------------
Confidence 99999999999 99987511 34444
Q ss_pred ccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee
Q 001184 725 ARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS 787 (1130)
Q Consensus 725 ~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 787 (1130)
+..+++ .|+++++|+....... . -.+...|.+++|+|||+.+++++.
T Consensus 304 ----~~l~a~--~d~~v~lW~~~g~~l~---------~-~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 304 ----NIIAPY--LEKKFKKWSTIWNEFN---------N-YETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ----CSSHHH--HHHHHHHTTTTTTSSS---------S-SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred ----ceEEEE--cCCEEEEEECCCCcee---------e-eccceEEEEEEECCCCCEEEEEEe
Confidence 333333 3799999987543211 0 113566899999999999998876
No 82
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.4e-31 Score=300.73 Aligned_cols=317 Identities=16% Similarity=0.277 Sum_probs=244.0
Q ss_pred ecCCCcCEEEEeeccc--CCccEEEEEecCCcEEEEEccCCcceeeecC-----CCccEEEEEEecC----CCeEEEeee
Q 001184 493 FEGHEAPVYSVCPHQK--ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-----PGLWCTTMLYSAD----GSRLFSCGT 561 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~s~~----~~~l~~~~~ 561 (1130)
..+|..+|.+++|+|. .....+++++.++.|++||+.+.+....+.. +...|.+++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4489999999999874 2335677777788999999997766554432 5567999999999 668999886
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeEEEec-cCCCCCcceEE
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEA-EGGLPSLPRLR 639 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~i~~v~ 639 (1130)
++.|++||+.+++.+..+.+|.. .+.+++|+| +++++++++.||.|++||+.+++.+..+.. ..+...|.+++
T Consensus 94 ----dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 94 ----RGIIRIINPITMQCIKHYVGHGN-AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp ----TCEEEEECTTTCCEEEEEESCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred ----CCEEEEEEchhceEeeeecCCCC-cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 89999999999999999998766 899999999 899999999999999999999998888732 23445899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCccccc
Q 001184 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~ 719 (1130)
|+|++++|++++.||.|++||+.++ +....+.... .++|+
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~-------------------~~~~~-------------------- 208 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSK-RMMNAIKESY-------------------DYNPN-------------------- 208 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSH-HHHHHHHHHH-------------------TCCGG--------------------
T ss_pred ECCCCCEEEEecCCCCEEEEECCCC-ccccccceeE-------------------EecCC--------------------
Confidence 9999999999999999999999876 3333332210 22232
Q ss_pred CCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCC
Q 001184 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT 799 (1130)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 799 (1130)
+..+...........+.
T Consensus 209 ---------~~~~~~~~~~~~~~~~~------------------------------------------------------ 225 (366)
T 3k26_A 209 ---------KTNRPFISQKIHFPDFS------------------------------------------------------ 225 (366)
T ss_dssp ---------GCSSCCCCEEECCCSEE------------------------------------------------------
T ss_pred ---------CCcccccceeeccCccc------------------------------------------------------
Confidence 00000000000000000
Q ss_pred CCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCce-------------
Q 001184 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFK------------- 865 (1130)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~------------- 865 (1130)
....|...|.+++|+ ++++++++ ||.|++||+.+++
T Consensus 226 ----------------------------~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 275 (366)
T 3k26_A 226 ----------------------------TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNV 275 (366)
T ss_dssp ----------------------------ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCE
T ss_pred ----------------------------cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcch
Confidence 001366677777777 55777776 7778888776653
Q ss_pred -eEEEEeCCCCCeEEEEEeCCC--CcEEEEEeCCCcEEEEEeecCe----EEEEEecC--CCCeeEEEEccCCCeEEEEe
Q 001184 866 -VMTTFMSPPPASTFLAFHPQD--NNIIAIGMEDSTIQIYNVRVDE----VKTKLKGH--QKHITGLAFSTNLNILVSSG 936 (1130)
Q Consensus 866 -~~~~~~~~~~~i~~l~~sp~~--~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h--~~~V~~l~~s~dg~~L~s~s 936 (1130)
.+..+..|...|.+++|+| + +.+|++|+.||.|++||+.+++ ....+.+| ...|++++|+|++++|++++
T Consensus 276 ~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 276 TILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC 354 (366)
T ss_dssp EEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred heeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence 3777888999999999999 7 9999999999999999999875 45578888 79999999999999999999
Q ss_pred CCCcEEEEECCC
Q 001184 937 SDAQLIFWNTDT 948 (1130)
Q Consensus 937 ~Dg~i~vwd~~~ 948 (1130)
.||.|++||+.+
T Consensus 355 ~dg~i~iwd~~~ 366 (366)
T 3k26_A 355 DDASIWRWDRLR 366 (366)
T ss_dssp TTSEEEEEEC--
T ss_pred CCCEEEEEEecC
Confidence 999999999853
No 83
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-31 Score=329.06 Aligned_cols=248 Identities=22% Similarity=0.294 Sum_probs=214.4
Q ss_pred eecCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEEecCCccc--eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001184 404 IVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGSNDL--CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg-~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v 480 (1130)
.+.+|.+.|++++|+|++ ++|++|+.|++|++||+.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 578999999999999974 79999999999999999765422 22346789999999999999999 89999999999
Q ss_pred EEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee---cCCCccEEEEEEecCC--C
Q 001184 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY---DAPGLWCTTMLYSADG--S 554 (1130)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~~~--~ 554 (1130)
+||| .++..+..+.+|...|.+++|++ ++..|++++.|++|++||.......... ..|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 9999 88889999999999999999975 5578999999999999998654333222 3567789999999987 5
Q ss_pred eEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCC
Q 001184 555 RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634 (1130)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 634 (1130)
.+++++. ++.|++||+.+++....+.+|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ..
T Consensus 533 ~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~ 604 (694)
T 3dm0_A 533 TIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SV 604 (694)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SC
T ss_pred eEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---Cc
Confidence 7888876 89999999999999999998766 8999999999999999999999999999999888776543 36
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 635 LPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 635 i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.+++|+|++.++++++ ++.|++||+.++
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 89999999998887765 556999999876
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-31 Score=312.31 Aligned_cols=300 Identities=12% Similarity=0.193 Sum_probs=233.2
Q ss_pred eccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCC------------c
Q 001184 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSS------------I 410 (1130)
Q Consensus 343 ~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~ 410 (1130)
.+.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. .
T Consensus 24 ~~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~ 94 (447)
T 3dw8_B 24 DVAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEE 94 (447)
T ss_dssp CCCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECC
T ss_pred cccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccC
Confidence 456789999999999998 5999999999999999987631100000 000112467888 8
Q ss_pred cEEEEEEcCCC--CEEEEEeCCCeEEEEEecCCccce------------------------------------eeee-ee
Q 001184 411 SVSRVAWSPDG--NFIGVAFTKHLIHLYTYQGSNDLC------------------------------------QSLE-ID 451 (1130)
Q Consensus 411 ~V~~v~~spdg--~~las~~~d~~i~vwd~~~~~~~~------------------------------------~~~~-~~ 451 (1130)
.|.+++|+|++ .+|++++.|++|++||+.++.... .... ..
T Consensus 95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 89999999998 899999999999999998744210 0011 36
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c-CCCeee-------EecCCCcCEEEEeecccCCccEEEEEecCCc
Q 001184 452 AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L-SGRKLF-------QFEGHEAPVYSVCPHQKENIHFIFSTAVDGK 522 (1130)
Q Consensus 452 ~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~-~~~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 522 (1130)
+|...|.+++|+|+++ +|++| .|+.|++|| . .+..+. .+.+|...|.+++|+|.. ..+|++++.||.
T Consensus 175 ~h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~ 250 (447)
T 3dw8_B 175 AHTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS-CNTFVYSSSKGT 250 (447)
T ss_dssp CCSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC-TTEEEEEETTSC
T ss_pred CCCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC-CcEEEEEeCCCe
Confidence 8999999999999999 78888 799999999 4 344444 366899999999997642 179999999999
Q ss_pred EEEEEccCCcc----eeeecCCCc------------cEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC-CceeEEEec
Q 001184 523 IKAWLYDNVGS----RVDYDAPGL------------WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIG 585 (1130)
Q Consensus 523 i~vwd~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~ 585 (1130)
|++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+++ ++.+..+.+
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEES
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeec
Confidence 99999998876 566777765 899999999999999886 48999999997 888888888
Q ss_pred ccCce--------------eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc----------------------
Q 001184 586 FRKKS--------------AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE---------------------- 629 (1130)
Q Consensus 586 ~~~~~--------------v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------------- 629 (1130)
|.... +..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccc
Confidence 75310 223899999999999999999999999998876422111
Q ss_pred --------CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 630 --------GGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 630 --------~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.....|..++|+|++++||+++.++ +.+|..
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1223578899999999999998775 777764
No 85
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.5e-30 Score=288.86 Aligned_cols=281 Identities=15% Similarity=0.272 Sum_probs=234.3
Q ss_pred EEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC
Q 001184 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT 429 (1130)
Q Consensus 350 V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~ 429 (1130)
.++|+|||++ +||+|. |++|+|||+.+|+.+... .+.+|...|++++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~-----------------~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5679999986 578775 899999999999876521 24578899999999999999999999
Q ss_pred CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEEEEeecc
Q 001184 430 KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQ 507 (1130)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~~~~~~~ 507 (1130)
||+|++||+++++.+. .+.+|...+.++.+. +. .+++++.++.+++|+ .....+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999987655 678999888776554 55 799999999999999 44566788899999999999865
Q ss_pred cCCccEEEEEecCCcEEEEEccCCcce----eeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 508 KENIHFIFSTAVDGKIKAWLYDNVGSR----VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 508 ~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
++.++++++.|+.|++||+++++.. .....+...|.++.++|++..++.... +..++.|++||..........
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 5579999999999999999876543 345566778999999998876654332 234889999999988877666
Q ss_pred ecccCceeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
... ..+..+.|+++++.+++++ .|+.|++||+.+++++..+..|.. .|++++|+|++++|++++.||+|+|||+
T Consensus 238 ~~~--~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DAH--SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECS--SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred cce--eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 533 3688899999999888765 799999999999999999887654 8999999999999999999999999998
Q ss_pred CCC
Q 001184 662 ADG 664 (1130)
Q Consensus 662 ~~~ 664 (1130)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 86
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.3e-31 Score=297.89 Aligned_cols=203 Identities=10% Similarity=0.099 Sum_probs=168.1
Q ss_pred CCCceeEEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe
Q 001184 832 AEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 908 (1130)
+...+.+++|||||+++++++ |++|+|||+.+++++..+. |...|.+++|+| ++++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556789999999999987654 6899999999999999886 677899999999 89999999855 57777777776
Q ss_pred EEEE--EecCCCCeeEEEEccCCCeEEEEeCCC----cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 909 VKTK--LKGHQKHITGLAFSTNLNILVSSGSDA----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 909 ~~~~--l~~h~~~V~~l~~s~dg~~L~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
.+.. ..+|...|.+++|+||++++++++.|+ .+++|++.............. .+...|.+++|+|||++|++
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTTSCEEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec--CCCCCeEeEEECCCCCceEE
Confidence 5543 457889999999999999999999887 588899877543222222222 23368999999999999998
Q ss_pred -EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 983 -NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 983 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
+.|+.|+|||+.+++++..+.. +|..+|++++|||||++||+|+.|++|+|||+...
T Consensus 287 gs~D~~V~iwd~~~~~~~~~~~~--gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 287 ASNDNSIALVKLKDLSMSKIFKQ--AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTSCEEEEETTTTEEEEEETT--SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EcCCCEEEEEECCCCcEEEEecC--cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 5799999999999999887632 23889999999999999999999999999999754
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.7e-31 Score=302.34 Aligned_cols=300 Identities=16% Similarity=0.178 Sum_probs=239.5
Q ss_pred cCCCCEEEEEEec-CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCC
Q 001184 345 HQGSSVVSMDFHP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGN 422 (1130)
Q Consensus 345 ~h~~~V~~v~fsp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~ 422 (1130)
+|.+.|++++|+| +++ +|++|+.||.|+|||+.+++.......... .........+|...|.+++|+| +++
T Consensus 41 ~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp CCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred ccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEEEccCCCc
Confidence 4999999999999 998 699999999999999998876542110000 0000011246999999999999 788
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC---CCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP---NKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d---~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
+|++++.||.|++||+.+++... .+ .+...+.+++|++. +. ++++++.|+.|++|| .+++.+..+.+|..
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 187 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSHILQGHRQ 187 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCEEECCCCS
T ss_pred EEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceeeeecCCCC
Confidence 99999999999999999987554 23 37788999999984 44 799999999999999 88889999999999
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcce-eee---------------cCCCccEEEEEEecCCCeEEEeeec
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDY---------------DAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~---------------~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.|.+++|++... .++++++.||.|++||++..... ..+ ..+...|.+++|+|++++|++++.
T Consensus 188 ~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 265 (408)
T 4a11_B 188 EILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT- 265 (408)
T ss_dssp CEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET-
T ss_pred cEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC-
Confidence 999999976442 36999999999999999876522 222 456778999999999999999986
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccC----ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRK----KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
++.|++||+.+++....+..+.. ...........+..+++++.++.|++||+.+++.+..+..+.. .|.++
T Consensus 266 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~v~~~ 340 (408)
T 4a11_B 266 ---DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK--TVDCC 340 (408)
T ss_dssp ---TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS--CEEEE
T ss_pred ---CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC--eEEEE
Confidence 89999999998876654433211 1122233334456777888899999999999999998876654 89999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|+|++++|++++.||.|++|++.+.
T Consensus 341 ~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 341 VFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEETTTTEEEEEETTSCEEEEEECC-
T ss_pred EEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 99999999999999999999999887
No 88
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.8e-31 Score=297.13 Aligned_cols=252 Identities=14% Similarity=0.204 Sum_probs=207.4
Q ss_pred eeecCCCccEEEEEEcCCCCEE-EEEeC---CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC---CCceEEEEEc
Q 001184 403 AIVKDSSISVSRVAWSPDGNFI-GVAFT---KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP---NKQLCIVTCG 475 (1130)
Q Consensus 403 ~~~~~h~~~V~~v~~spdg~~l-as~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d---~~~l~l~s~s 475 (1130)
.++.+|...|.+++|+|++..+ ++|+. |+.|++||+.+++.... ...+|...|.+++|+|+ ++ ++++++
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 4677899999999999999655 55655 89999999998874432 23479999999999999 57 799999
Q ss_pred CCCcEEEEe-cCCC-eeeEecCCCcCEEEEeecc----cCCccEEEEEecCCcEEEEEccCCc-ceeeecCCCc----cE
Q 001184 476 DDKLIRVWD-LSGR-KLFQFEGHEAPVYSVCPHQ----KENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGL----WC 544 (1130)
Q Consensus 476 ~d~~v~iwd-~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~----~v 544 (1130)
.|+.|++|| .+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||++... ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 999999999 6666 8899999999999997743 5677899999999999999999876 4555554433 78
Q ss_pred EEEE----EecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC---CCCEEEEEeCCCcEEEEeC
Q 001184 545 TTML----YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT---TRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 545 ~~~~----~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~ 617 (1130)
.+++ |+|+++++++++. ++.|++||+++++.... ..+ ...+.+++|+| +++++++++.||.|++||+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EEC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 8888 7889999999985 89999999999887554 333 34799999999 8999999999999999999
Q ss_pred CCCceeEEEe---ccCCCCCcceEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 001184 618 DNVNMLTSTE---AEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1130)
Q Consensus 618 ~~~~~~~~~~---~~~~~~~i~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 664 (1130)
.+++....+. ...+...|.+++|+|+++ ++++++.||.|++|++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 8876554443 123445899999999998 8999999999999998765
No 89
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-30 Score=296.17 Aligned_cols=247 Identities=17% Similarity=0.137 Sum_probs=214.2
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
++..|.+.|.+++|+||+++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVW 79 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEE
Confidence 355789999999999999999999999999999999875 223346789999999999999999 89999999999999
Q ss_pred e-cCCCeee--EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc----eeeecCCCccEEEEEEecCCCeE
Q 001184 484 D-LSGRKLF--QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS----RVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 484 d-~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
| .+++... .+.+|...|.+++|++ ++.+|++++.|+.|++||++.... ......+...|.+++|+|+++++
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 9 6665443 3467999999999975 558999999999999999998764 22335567899999999999999
Q ss_pred EEeeecCCCCcEEEEeeC------------------CCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 557 FSCGTSKEGDSHLVEWNE------------------SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
++++. ++.|++||+ ..++.+..+.+|.. .+.+++|+|++++|++++.||.|++||+.
T Consensus 158 ~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 158 AAGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADAD 232 (372)
T ss_dssp EEEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred EEEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 99986 899999995 46778888877655 89999999999999999999999999999
Q ss_pred CCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
+++.+..+..+.. .+.+++|+|++.+++++ .|+.|++|++.+
T Consensus 233 ~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 233 KKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999988886654 79999999999988877 999999999977
No 90
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-33 Score=311.29 Aligned_cols=316 Identities=9% Similarity=0.038 Sum_probs=242.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~ 486 (1130)
.-...|.+++|||||+++|+++.|++|+ |.+.++ .+.+|...|.+++|+|+| .++.+.+|+.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~ 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQ 75 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCC
Confidence 4467899999999999999999999999 755554 346899999999999998 37777777755
Q ss_pred CCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCc-----cEEEEEEecCCCeEEEeee
Q 001184 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-----WCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~ 561 (1130)
+..+..+ .|...|.+++|+| +|..|++++.||.|++||.+. ....+. +.. .+.+++|+|||++|++++.
T Consensus 76 ~~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 76 QNGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp SSCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred CceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 5554444 4588999999965 668999999999999999544 333444 444 4999999999999999986
Q ss_pred cCCCCcEEEEeeCCCCce-------eEEE----ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce---eEEEe
Q 001184 562 SKEGDSHLVEWNESEGAL-------KRTY----IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM---LTSTE 627 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~-------~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~ 627 (1130)
||+|++||+.++.. +.++ .+|. ..|.+++|+|+| +++++.|+.|++||+.++.. ..++.
T Consensus 150 ----DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~-~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 150 ----DGELQFFSIRKNSENTPEFYFESSIRLSDAGSK-DWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp ----TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC-CCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred ----CCEEEEEECCCCccccccceeeeeeeccccccc-ccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 99999999998863 5666 4433 589999999999 88999999999999988774 24453
Q ss_pred ccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccC
Q 001184 628 AEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVD 707 (1130)
Q Consensus 628 ~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 707 (1130)
. .+...|.+++|+ |+.||+++ ++.|++|++.++.....
T Consensus 223 ~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~-------------------------------------- 260 (588)
T 2j04_A 223 N-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL-------------------------------------- 260 (588)
T ss_dssp C-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE--------------------------------------
T ss_pred c-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE--------------------------------------
Confidence 2 233479999999 68899887 69999999876521000
Q ss_pred CCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEE--eccCCeEEEe
Q 001184 708 RSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLY--TNSGIGILAL 785 (1130)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--s~~g~~l~~~ 785 (1130)
. .+|.+.+..++| +|++..++++
T Consensus 261 -----------------------------------------------------~--~gh~~~V~~va~~~s~d~~~La~a 285 (588)
T 2j04_A 261 -----------------------------------------------------K--TGSLENFHIIPLNHEKESTILLMS 285 (588)
T ss_dssp -----------------------------------------------------E--CSCCSCCCEEEETTCSSCEEEEEC
T ss_pred -----------------------------------------------------E--cCCCceEEEEEeeeCCCCCEEEEE
Confidence 0 127788889999 9999999999
Q ss_pred eeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCce
Q 001184 786 WSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK 865 (1130)
Q Consensus 786 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~ 865 (1130)
+.+|+ ++|.++ .++++||+..+++. |+++++|+..++.
T Consensus 286 ~edG~-klw~~d----------------------------------------~~~~spd~~l~a~~-d~~v~lW~~~g~~ 323 (588)
T 2j04_A 286 NKTSY-KVLLED----------------------------------------ELHVTADNIIAPYL-EKKFKKWSTIWNE 323 (588)
T ss_dssp SSCEE-EEEESS----------------------------------------SEEEECCCSSHHHH-HHHHHHTTTTTTS
T ss_pred cCCCC-EEEeec----------------------------------------cEEECCCceEEEEc-CCEEEEEECCCCc
Confidence 99999 999642 24577777766664 7777777765443
Q ss_pred eEEEEeCCCCCeEEEEEeCCCCcEEEEEe
Q 001184 866 VMTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 866 ~~~~~~~~~~~i~~l~~sp~~~~~lasg~ 894 (1130)
+..+.+ ...|.+++|+| ||+++|+++
T Consensus 324 -l~~~~~-~~~I~~va~SP-dG~~lA~~~ 349 (588)
T 2j04_A 324 -FNNYET-TLVIHGISLSP-DGYSIAIVY 349 (588)
T ss_dssp -SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred -eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence 223333 44577777777 777777664
No 91
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-30 Score=286.08 Aligned_cols=239 Identities=15% Similarity=0.229 Sum_probs=211.0
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
.+.+|.+.|.+++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 68899999999999 999999999999999999998876443 5678999999999999999 89999999999999
Q ss_pred e-cC---CCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEec-CCCeEEE
Q 001184 484 D-LS---GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSRLFS 558 (1130)
Q Consensus 484 d-~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 558 (1130)
+ .. ++.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.++.|.| +++++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9 33 3567888999999999998 246899999999999999 5666777888899999999998 8999999
Q ss_pred eeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceE
Q 001184 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v 638 (1130)
++. ++.|++|| .++....+...+...+.+++|+|++. +++++.||.|++||+.+++.+..+..+.. .|.++
T Consensus 161 ~~~----d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~ 231 (313)
T 3odt_A 161 ASA----DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCI 231 (313)
T ss_dssp EET----TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEC----CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eEEEE
Confidence 986 89999999 56677778775566899999999987 99999999999999999999988876654 89999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|+|++ .+++++.||.|++||+.++
T Consensus 232 ~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 232 KLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEecCC-CEEEEecCCEEEEEECCCC
Confidence 999999 5889999999999998765
No 92
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1e-30 Score=293.69 Aligned_cols=279 Identities=11% Similarity=0.120 Sum_probs=237.5
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC-E
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-F 423 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~ 423 (1130)
+|.+.|++++|+|+++ +|++|+.||.|+|||+.+++... ....+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNV----------------DLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEE----------------EEEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccc----------------cceeeeecCCceEEEEECCCCCcE
Confidence 5999999999999998 58999999999999998876211 0013458999999999999999 9
Q ss_pred EEEEeCCCeEEEEEe-cCCccceeeeeeec--CCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cC---------CCee
Q 001184 424 IGVAFTKHLIHLYTY-QGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS---------GRKL 490 (1130)
Q Consensus 424 las~~~d~~i~vwd~-~~~~~~~~~~~~~~--h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~---------~~~~ 490 (1130)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++|| .+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 87753 35778 999999999999 77 899999999999999 66 6777
Q ss_pred eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-Ccc--eeeecCCCccEEEEEEec-CCCeEEEeeecCCCC
Q 001184 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGS--RVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGD 566 (1130)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~ 566 (1130)
..+. |...|.+++|++ ++ +++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. +
T Consensus 145 ~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----d 215 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----D 215 (342)
T ss_dssp SSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----T
T ss_pred eEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----C
Confidence 7776 999999999964 32 99999999999999988 443 234455677899999999 9999999986 8
Q ss_pred cEEEEeeCCCC------ceeEEEecccC--------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc-CC
Q 001184 567 SHLVEWNESEG------ALKRTYIGFRK--------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-GG 631 (1130)
Q Consensus 567 ~~i~~wd~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~ 631 (1130)
+.|++|+.... +....+..|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~ 295 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED 295 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC
Confidence 99999999887 77888887643 37999999999999999999999999999999998887765 43
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCc-EEEEE
Q 001184 632 LPSLPRLRFNKEGNLLVVTTADQG-IKILA 660 (1130)
Q Consensus 632 ~~~i~~v~~s~~~~~l~~~~~dg~-i~iw~ 660 (1130)
.|.+++ |++++|++++.||. .+.+.
T Consensus 296 --~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 296 --SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp --EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred --CceEec--CCCCeEEEEecCCccccccc
Confidence 788888 99999999999998 44443
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=2.6e-31 Score=293.69 Aligned_cols=248 Identities=17% Similarity=0.242 Sum_probs=203.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCC
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~ 422 (1130)
+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+| +++
T Consensus 11 ~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~-----------------~~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQIL-----------------IADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ---CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEECCGGGSS
T ss_pred cccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEE-----------------EEEEcCCCccEEEEEeCCCCCCC
Confidence 5999999999999998 59999999999999998765321 114779999999999987 489
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-cCCCe---eeEecCC
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGRK---LFQFEGH 496 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~iwd-~~~~~---~~~~~~h 496 (1130)
+||+|+.|++|++||+.++... ....+.+|...|.+++|+|+ +. +|++|+.|++|++|| ..+.. ...+.+|
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 9999999999999999886422 23367899999999999998 66 799999999999999 44322 3556789
Q ss_pred CcCEEEEeecccC---------------CccEEEEEecCCcEEEEEccCC---cceeeecCCCccEEEEEEecCC----C
Q 001184 497 EAPVYSVCPHQKE---------------NIHFIFSTAVDGKIKAWLYDNV---GSRVDYDAPGLWCTTMLYSADG----S 554 (1130)
Q Consensus 497 ~~~v~~~~~~~~~---------------~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~~~----~ 554 (1130)
...|.+++|+|.. ++.+|++++.|++|++||++.. .....+..|...|.+++|+|++ +
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 9999999998752 1468999999999999999755 2445677888999999999987 7
Q ss_pred eEEEeeecCCCCcEEEEeeCCCC---c-eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 555 RLFSCGTSKEGDSHLVEWNESEG---A-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~---~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
+|++++. |+.|++|++.+. . ....+..|. ..+.+++|+|++++|++++.|+.|++|+..
T Consensus 230 ~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~-~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 230 TIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN-DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS-SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEcC----CCeEEEEEccCccccchhhhhhhcCC-CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 8999986 999999998763 1 223444544 489999999999999999999999999975
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=2.1e-30 Score=301.31 Aligned_cols=273 Identities=23% Similarity=0.336 Sum_probs=236.2
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
+|...|+|++| +++ +|++|+.||.|+|||+.+++... .+.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 47788999887 677 59999999999999999988765 47799999999999 88999
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCee---eEecCCCcCE
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL---FQFEGHEAPV 500 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~---~~~~~h~~~v 500 (1130)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++|| .++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999987654 6789999999999974 4 799999999999999 666555 6778999999
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
.++++ ++.++++++.||.|++||+++......+..+...+.++.+ +++++++++. ++.|++||+++++.+
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEE
Confidence 99988 4479999999999999999999999899999999999988 4689999886 899999999999999
Q ss_pred EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---------eeEEEeccCCCCCcceEEEcCCCCEEEEEe
Q 001184 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN---------MLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1130)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~ 651 (1130)
..+.+|.. .+.+++| +++++++|+.||.|++||+.++. .+..+..+.. .|.+++| ++.+|++++
T Consensus 330 ~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 330 RVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECC
T ss_pred EEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEEEe
Confidence 99998766 7888888 78899999999999999987665 6677765544 7999999 678899999
Q ss_pred CCCcEEEEEcCCCc
Q 001184 652 ADQGIKILANADGL 665 (1130)
Q Consensus 652 ~dg~i~iw~~~~~~ 665 (1130)
.||.|++||+.+..
T Consensus 403 ~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 403 HDDTILIWDFLNDP 416 (435)
T ss_dssp SSSEEEEEC-----
T ss_pred CCCEEEEEECCCCC
Confidence 99999999997763
No 95
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.98 E-value=1.2e-31 Score=305.83 Aligned_cols=244 Identities=12% Similarity=0.080 Sum_probs=199.5
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
...+.+.|.+++|+|||++||+|+.|+.|++||+.++. ......+.+|...|.+++|+|+++ +|++++.|++|++||
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 44567799999999999999999999999999999872 122236789999999999999998 799999999999999
Q ss_pred -cCCC---eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc---eeeecC-CCccEEEEEEecCCCeE
Q 001184 485 -LSGR---KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS---RVDYDA-PGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 485 -~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~-~~~~v~~~~~s~~~~~l 556 (1130)
.+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||++.... ...+.. |...|.+++|+|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 5555 5777889999999999976 557999999999999999998763 556666 88899999999999999
Q ss_pred EEeeecCCCCcEEEEeeCC------------------CCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 557 FSCGTSKEGDSHLVEWNES------------------EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
++++. ++.|++||+. .++++..+ +|. ..+.+++|+|++++|++++.||.|++||+.
T Consensus 162 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 162 AAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG-GWVHAVGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp EEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS-SSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred EEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC-ceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 99986 8999999985 34455555 544 489999999999999999999999999999
Q ss_pred CCce----eEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 619 NVNM----LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 619 ~~~~----~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
+++. +..+..+.. .|.+++|+|++++|++++.++.+ +|+..
T Consensus 236 ~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 236 APEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp STTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9887 566665543 79999999999999988776666 66654
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=2.7e-31 Score=293.62 Aligned_cols=249 Identities=16% Similarity=0.301 Sum_probs=204.1
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~ 481 (1130)
++.+|.+.|.+++|+|||++||+|+.|++|++||+.++... ....+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 57799999999999999999999999999999999887532 23468899999999999863 67 799999999999
Q ss_pred EEe-cCC--CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc---eeeecCCCccEEEEEEecC---
Q 001184 482 VWD-LSG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSAD--- 552 (1130)
Q Consensus 482 iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 552 (1130)
+|| .++ ..+..+.+|...|.+++|+|..++.+|++++.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 999 555 4667788999999999999876678999999999999999987543 2345667778999999997
Q ss_pred --------------CCeEEEeeecCCCCcEEEEeeCCCC---ceeEEEecccCceeEEEEEcCCC----CEEEEEeCCCc
Q 001184 553 --------------GSRLFSCGTSKEGDSHLVEWNESEG---ALKRTYIGFRKKSAGVVQFDTTR----NRILAAGEDNQ 611 (1130)
Q Consensus 553 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~ 611 (1130)
+++|++++. |+.|++||.+.+ +.+..+.+|.. .|.+++|+|++ ++|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 468888876 899999999755 35666777665 89999999986 79999999999
Q ss_pred EEEEeCCCCc----eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001184 612 IKFWDMDNVN----MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 612 i~vwd~~~~~----~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
|++|++.+.. ....+..+ ...|.+++|+|++++|++++.|+.|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999987631 12223333 3479999999999999999999999999975
No 97
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=4.3e-30 Score=291.84 Aligned_cols=288 Identities=16% Similarity=0.220 Sum_probs=238.2
Q ss_pred cceeeec-cCCCCEEEEEEecC---CCeEEEEEeCcCeEEEEeCCC-CceeecccceeeeccccccceeeeeecCCCccE
Q 001184 338 RAVACTM-HQGSSVVSMDFHPF---HHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISV 412 (1130)
Q Consensus 338 ~~~~~~~-~h~~~V~~v~fspd---g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 412 (1130)
...+..+ +|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ ++.+. ..+.+|...|
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h~~~v 89 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMHTGPV 89 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEE------------------EEEEECSSCE
T ss_pred cceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeE------------------EEeccccCCE
Confidence 3344455 59999999999999 46 699999999999999987 44431 1467899999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEE--ecCCCceEEEEEcCCCcEEEEe-cCCCe
Q 001184 413 SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF--SYPNKQLCIVTCGDDKLIRVWD-LSGRK 489 (1130)
Q Consensus 413 ~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~--s~d~~~l~l~s~s~d~~v~iwd-~~~~~ 489 (1130)
.+++|+|++++|++++.||.|++||+.+++... +.+|...|.+++| +++++ ++++++.|+.|++|| .+++.
T Consensus 90 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 90 LDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSC
T ss_pred EEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcE
Confidence 999999999999999999999999999887543 5679999999999 88888 899999999999999 78888
Q ss_pred eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec--CCCccEEEEEEecCCCe----EEEeeecC
Q 001184 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APGLWCTTMLYSADGSR----LFSCGTSK 563 (1130)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~----l~~~~~~~ 563 (1130)
+..+..|. .+.++.+.. ..+++++.++.+++|+++......... .....+.++.+.++... +++++.
T Consensus 164 ~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 236 (368)
T 3mmy_A 164 MMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI-- 236 (368)
T ss_dssp SEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET--
T ss_pred EEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC--
Confidence 88888665 566666543 478899999999999998766554332 23445677777776655 888875
Q ss_pred CCCcEEEEeeCCCC---ceeEEEecccCc-----------eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc
Q 001184 564 EGDSHLVEWNESEG---ALKRTYIGFRKK-----------SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
++.|++||+... .....+.+|... .+.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 237 --dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (368)
T 3mmy_A 237 --EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL 314 (368)
T ss_dssp --TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred --CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC
Confidence 899999999887 567777776543 5999999999999999999999999999999998888765
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 630 GGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 630 ~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.. .|.+++|+|++++|++++.|+..+.|++
T Consensus 315 ~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 315 DQ--PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp SS--CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CC--CceEEEECCCCCeEEEEecccccccccc
Confidence 44 8999999999999999999886555543
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.3e-30 Score=299.83 Aligned_cols=295 Identities=14% Similarity=0.191 Sum_probs=240.4
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-CCCEEEEE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFIGVA 427 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~las~ 427 (1130)
....++++|+...++++|+.||.|+||++........ . ...+.+|.+.|.+++|+| ++++||+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-~--------------~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-N--------------VPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-T--------------CCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-C--------------CceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 4556899999876667789999999999965433210 1 114679999999999999 99999999
Q ss_pred eCCCeEEEEEecCCccc----eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEe--cCCCcCE
Q 001184 428 FTKHLIHLYTYQGSNDL----CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF--EGHEAPV 500 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~--~~h~~~v 500 (1130)
+.||+|++||+.++... .....+.+|...|.+++|+|+++. +|++++.|+.|++|| .+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987421 233467899999999999999843 799999999999999 888888899 8899999
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-cCCCcc-EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-DAPGLW-CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.+++|++ ++.+|++++.||.|++||+++......+ ..+... +.++.|+|++++++++. +...++.|++||+.+++
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CTTCCEEEEEEETTBCS
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cCCCCceEEEEcCcccc
Confidence 9999976 5689999999999999999998888777 566654 89999999999988873 11238999999998876
Q ss_pred e-eEEEecccCceeEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCce-eEEEeccCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001184 579 L-KRTYIGFRKKSAGVVQFDTTRNRILA-AGEDNQIKFWDMDNVNM-LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 579 ~-~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
. +......+...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 44444334447899999999999875 55799999999999884 555555555568999999999988764 5679
Q ss_pred EEEEEcCCC
Q 001184 656 IKILANADG 664 (1130)
Q Consensus 656 i~iw~~~~~ 664 (1130)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999775
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=3.3e-29 Score=289.49 Aligned_cols=285 Identities=16% Similarity=0.247 Sum_probs=234.2
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1130)
.-.+..++|++++ +++++.|++|++||..+ |.........+|...|++++|+|||+
T Consensus 105 d~y~~~l~wS~~n--~lAvgld~tV~lWd~~t----------------------g~~~~~~~~~~~~~~V~sv~fspdg~ 160 (420)
T 4gga_A 105 DYYLNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQLLQMEQPGEYISSVAWIKEGN 160 (420)
T ss_dssp CTTCBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEEEEECCSTTCCEEEEEECTTSS
T ss_pred cccceeEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEEEEEecCCCCcEEEEEECCCCC
Confidence 3456779999764 45556799999987543 33322222235788999999999999
Q ss_pred EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec-CeEEEEEecCCCCeeEEE
Q 001184 847 YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DEVKTKLKGHQKHITGLA 924 (1130)
Q Consensus 847 ~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~ 924 (1130)
+|++|+ ||.|+|||+.+++++..+.+|...+.+++++ +.+|++|+.|+.+++||... ...+..+.+|...+..+.
T Consensus 161 ~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 161 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 999998 8999999999999999999999999988875 47999999999999999886 456778999999999999
Q ss_pred EccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEE-E---EcCCcEEEEECCCceeee
Q 001184 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL-V---NHETQLAIYDGSKMECIR 1000 (1130)
Q Consensus 925 ~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~---~~d~~i~v~d~~~~~~~~ 1000 (1130)
|+|+++++++++.|+.+++|+...++.......... .+...|.+++|+|++..++ + +.|+.|++||+.+++++.
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~--~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC--CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred ecCCCCeeeeeeccccceEEeeccccccceeeeeec--ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 999999999999999999999998764333222222 2337899999999766444 3 258999999999999998
Q ss_pred eeecCCCCCCCeEEEEECCCCCEEEEEe--CCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEE
Q 001184 1001 QWVPQDVLSSPISSAAYSCNSQLIYATF--TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQL 1078 (1130)
Q Consensus 1001 ~~~~~~~~~~~v~~v~~s~dg~~l~t~~--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1078 (1130)
.+..+ ..+.++.|+++++.+++++ .|+.|+|||+.+++.+..+. +|...+++++|+| ++.+|
T Consensus 316 ~~~~~----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-----------gH~~~V~~l~~sp-dg~~l 379 (420)
T 4gga_A 316 AVDAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-----------GHTSRVLSLTMSP-DGATV 379 (420)
T ss_dssp EEECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-----------CCSSCEEEEEECT-TSSCE
T ss_pred eeccc----cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-----------CCCCCEEEEEEcC-CCCEE
Confidence 88765 5899999999999888876 79999999999999888775 3445677889999 58899
Q ss_pred EEEeCCCcEEEEeCCCCc
Q 001184 1079 AVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1079 ~s~~~Dg~v~vW~~~~~~ 1096 (1130)
+||+.|++|++||+.+..
T Consensus 380 ~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 380 ASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEETTTEEEEECCSCSS
T ss_pred EEEecCCeEEEEECCCCC
Confidence 999999999999997654
No 100
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.7e-29 Score=290.06 Aligned_cols=284 Identities=15% Similarity=0.177 Sum_probs=236.8
Q ss_pred CCCcc--EEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 407 DSSIS--VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 407 ~h~~~--V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++||
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYD 162 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEE
Confidence 55444 55567765 56788889999999999998755421 223899999999999999 899999999999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-CcceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.+++.+..+.+|...|.+++|+ +.++++++.||.|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~- 237 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN- 237 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred CcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC-
Confidence 8899999999999999999983 36999999999999999984 4556678889999999999999999999986
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCC-EEEEEe--CCCcEEEEeCCCCceeEEEeccCCCCCcceEE
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
++.|++||+.+++.+..+..|.. .+.+++|+|++. .+++++ .|+.|++||+.+++.+..+.... .+.+++
T Consensus 238 ---d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~---~v~~~~ 310 (401)
T 4aez_A 238 ---DNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS---QVTSLI 310 (401)
T ss_dssp ---TSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS---CEEEEE
T ss_pred ---CCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC---cEEEEE
Confidence 89999999999999998887665 899999999775 555554 79999999999999988886433 699999
Q ss_pred EcCCCCEEEEEe--CCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCccc
Q 001184 640 FNKEGNLLVVTT--ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717 (1130)
Q Consensus 640 ~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~ 717 (1130)
|+|+++.+++++ .||.|++|++.++.. .
T Consensus 311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-~------------------------------------------------- 340 (401)
T 4aez_A 311 WSPHSKEIMSTHGFPDNNLSIWSYSSSGL-T------------------------------------------------- 340 (401)
T ss_dssp ECSSSSEEEEEECTTTCEEEEEEEETTEE-E-------------------------------------------------
T ss_pred ECCCCCeEEEEeecCCCcEEEEecCCccc-e-------------------------------------------------
Confidence 999999999954 899999999866410 0
Q ss_pred ccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecC
Q 001184 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWN 797 (1130)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 797 (1130)
..+. + .+|...|.+++|+|+|..+++++.||.+++|++.
T Consensus 341 ------------------------~~~~--------------~---~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 341 ------------------------KQVD--------------I---PAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp ------------------------EEEE--------------E---ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred ------------------------eEEE--------------e---cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 0000 1 2277889999999999999999999999999876
Q ss_pred CC
Q 001184 798 RT 799 (1130)
Q Consensus 798 ~~ 799 (1130)
.+
T Consensus 380 ~~ 381 (401)
T 4aez_A 380 DG 381 (401)
T ss_dssp C-
T ss_pred CC
Confidence 53
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.4e-29 Score=285.20 Aligned_cols=296 Identities=10% Similarity=0.125 Sum_probs=218.7
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CC
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DG 421 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg 421 (1130)
.+|.+.|++++|+|+++ +|++|+.||.|+|||+.++..... ....+.+|...|.+++|+| |+
T Consensus 8 ~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~ 71 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYG 71 (351)
T ss_dssp CCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGC
T ss_pred cccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCC
Confidence 36999999999999998 599999999999999987643211 1124679999999999999 69
Q ss_pred CEEEEEeCCCeEEEEEecCCccc------eeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-cCCCeeeE
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDL------CQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~------~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~iwd-~~~~~~~~ 492 (1130)
++|++|+.||.|++||+.++... .....+.+|...|.+++|+|+ +. ++++++.|+.|++|| .+++.+..
T Consensus 72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTC
T ss_pred CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhcc
Confidence 99999999999999999886421 334467899999999999999 88 899999999999999 66665544
Q ss_pred ec-------------CCCcCEEEEeeccc-CCccEEEEEecCCcEEEEEccCCcc--eeeecCCCccEEEEEEecCC---
Q 001184 493 FE-------------GHEAPVYSVCPHQK-ENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADG--- 553 (1130)
Q Consensus 493 ~~-------------~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~--- 553 (1130)
+. +|...+.+++|+|. .++..+++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence 33 68889999999875 1357999999999998888776654 45677788899999999998
Q ss_pred -CeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEE----eCCCcEEEEeCCCCceeEEEec
Q 001184 554 -SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA----GEDNQIKFWDMDNVNMLTSTEA 628 (1130)
Q Consensus 554 -~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~~~~~~~~~ 628 (1130)
++|++++. ++.|++||+.++........... ........+....+..+ .....+.+|+....+.+..+..
T Consensus 230 ~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
T 3f3f_A 230 YQLIATGCK----DGRIRIFKITEKLSPLASEESLT-NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD 304 (351)
T ss_dssp SEEEEEEET----TSCEEEEEEEECC----------------------------------------CCSEEEEEEEEECT
T ss_pred ceEEEEEcC----CCeEEEEeCCCCcCccccCCccc-ceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence 78999886 89999999987655444332221 22233333333333333 3445566677666677777765
Q ss_pred cCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 629 EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 629 ~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
|.. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 305 h~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 305 HNG--EVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp TSS--CEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccc--cEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 544 7999999999999999999999999999876
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.6e-28 Score=270.84 Aligned_cols=283 Identities=17% Similarity=0.244 Sum_probs=230.5
Q ss_pred ceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEE
Q 001184 769 KVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848 (1130)
Q Consensus 769 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 848 (1130)
....++||+++ +++++.|++|++||+.+ |+.+......+|...|.+++|+|++++|
T Consensus 27 y~~~l~WS~~~--~lAvg~D~tV~iWd~~t----------------------g~~~~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp TCBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred cceEEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEEEEEecCCCCeEEEEEECCCCCEE
Confidence 35678999886 45556799999987543 3333222223688899999999999999
Q ss_pred EEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC-eEEEEEecCCCCeeEEEEc
Q 001184 849 MSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTKLKGHQKHITGLAFS 926 (1130)
Q Consensus 849 a~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s 926 (1130)
++|+ ||+|++||+.+++++..+.+|...+.++.+. +.++++|+.++.+++|+.... ..+..+.+|...+..++++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 9998 8999999999999999999999988876664 579999999999999998865 5667889999999999999
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE----EcCCcEEEEECCCceeeeee
Q 001184 927 TNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV----NHETQLAIYDGSKMECIRQW 1002 (1130)
Q Consensus 927 ~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~----~~d~~i~v~d~~~~~~~~~~ 1002 (1130)
+++++|++++.|++|++||+.+++.......... .....+..++++|++..++. +.++.|++||..........
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC--CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeec--ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence 9999999999999999999998765433332222 22367899999998765442 35789999999988877665
Q ss_pred ecCCCCCCCeEEEEECCCCCEEEEEe--CCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEE
Q 001184 1003 VPQDVLSSPISSAAYSCNSQLIYATF--TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAV 1080 (1130)
Q Consensus 1003 ~~~~~~~~~v~~v~~s~dg~~l~t~~--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1080 (1130)
.. ...+..++|+++++.+++++ .|+.|+|||+.+++.+..+.. |...+.+++|+| ++.+|+|
T Consensus 238 ~~----~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g-----------H~~~V~~l~~sp-dg~~l~S 301 (318)
T 4ggc_A 238 DA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----------HTSRVLSLTMSP-DGATVAS 301 (318)
T ss_dssp EC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-----------CSSCEEEEEECT-TSSCEEE
T ss_pred cc----eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC-----------CCCCEEEEEEcC-CCCEEEE
Confidence 43 46899999999999888765 799999999999998887753 344567789999 5789999
Q ss_pred EeCCCcEEEEeCCCCc
Q 001184 1081 GLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1081 ~~~Dg~v~vW~~~~~~ 1096 (1130)
|+.||+|+|||+.+..
T Consensus 302 ~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTEEEEECCSCCC
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999997654
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=5.6e-29 Score=291.10 Aligned_cols=248 Identities=12% Similarity=0.182 Sum_probs=204.7
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCcc--------ceeeeeeecCC------------CCeeEEEEecCC
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND--------LCQSLEIDAHV------------GGVNDLAFSYPN 466 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~--------~~~~~~~~~h~------------~~V~~i~~s~d~ 466 (1130)
.|.+.|++++|+|||++||+|+.||.|+|||+.+++. ......+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4678999999999999999999999999999987652 11344678998 889999999998
Q ss_pred --CceEEEEEcCCCcEEEEe-cCCCee---------------------------------------eE-ecCCCcCEEEE
Q 001184 467 --KQLCIVTCGDDKLIRVWD-LSGRKL---------------------------------------FQ-FEGHEAPVYSV 503 (1130)
Q Consensus 467 --~~l~l~s~s~d~~v~iwd-~~~~~~---------------------------------------~~-~~~h~~~v~~~ 503 (1130)
. .+++++.|++|++|| .++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 799999999999999 443221 12 36899999999
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceee--------ecCCCccEEEEEEecCC-CeEEEeeecCCCCcEEEEeeC
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD--------YDAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~--------~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
+|++ ++.+|+++ .|+.|++||++....... +..|...|.+++|+|++ ++|++++. ++.|++||+
T Consensus 184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 9976 56799998 799999999985443332 55778899999999998 89999986 899999999
Q ss_pred CCCce----eEEEecccC-----------ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeEEEeccCCCCC----
Q 001184 575 SEGAL----KRTYIGFRK-----------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPS---- 634 (1130)
Q Consensus 575 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~---- 634 (1130)
++++. ...+.++.. ..+.+++|+|++++|++++. +.|++||+.+ ++.+..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 788887654 27999999999999999999 9999999997 888888776643111
Q ss_pred ---------cceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 635 ---------LPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 635 ---------i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+..++|+|++++|++++.||.|++||+.++
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 234999999999999999999999999887
No 104
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=6.6e-29 Score=278.87 Aligned_cols=250 Identities=11% Similarity=-0.019 Sum_probs=212.3
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
+..+|.+.|.+++|+|++++|++++.|+.|++||+.++........+.+|...|.+++|+|+++. +|++|+.|+.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence 35689999999999999999999999999999999987633233356689999999999999872 37899999999999
Q ss_pred ec-CCCeeeEecC--CCcCEEEEeecccCCccEEEEEecCCcEEEEEccC---------CcceeeecCCCccEEEEEEec
Q 001184 484 DL-SGRKLFQFEG--HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN---------VGSRVDYDAPGLWCTTMLYSA 551 (1130)
Q Consensus 484 d~-~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~s~ 551 (1130)
|. .......+.+ |...|.+++|++ +.+|++++.|+.|++||+++ ......+. +...+.+++|+|
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 85 DLIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred EeccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 97 8888889999 999999999987 57999999999999999987 55555555 777899999999
Q ss_pred CCCeEEEeeecCCCCcEEEEeeCCC-Cce-eEEEecccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC------ce
Q 001184 552 DGSRLFSCGTSKEGDSHLVEWNESE-GAL-KRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNV------NM 622 (1130)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~------~~ 622 (1130)
++ +++++. ++.|++||+++ +.. .......+...+.+++|+| +++++++++.||.|++|+++.. +.
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 88 777765 89999999988 543 2333333445899999999 9999999999999999999887 77
Q ss_pred eEEEeccCC-------CCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 623 LTSTEAEGG-------LPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 623 ~~~~~~~~~-------~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
...+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 777776643 347999999999999999999999999998766
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.2e-29 Score=284.18 Aligned_cols=252 Identities=14% Similarity=0.209 Sum_probs=210.9
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCC--ceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC--
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR--ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-- 420 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 420 (1130)
+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+ +.+. .+.+|...|.+++|+|+
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~ 68 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKF 68 (379)
T ss_dssp ECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCGGG
T ss_pred CCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCCCC
Confidence 5999999999999998 5999999999999999743 3322 47799999999999987
Q ss_pred CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-cCC--CeeeEecC
Q 001184 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSG--RKLFQFEG 495 (1130)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~iwd-~~~--~~~~~~~~ 495 (1130)
+++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++++.|+.|++|| ..+ .....+.+
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 145 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDA 145 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEEC
T ss_pred CCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecC
Confidence 99999999999999999999762 233357789999999999999 88 899999999999999 444 34556778
Q ss_pred CCcCEEEEeecccC-----------CccEEEEEecCCcEEEEEccCCcce----eeecCCCccEEEEEEecC---CCeEE
Q 001184 496 HEAPVYSVCPHQKE-----------NIHFIFSTAVDGKIKAWLYDNVGSR----VDYDAPGLWCTTMLYSAD---GSRLF 557 (1130)
Q Consensus 496 h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~~---~~~l~ 557 (1130)
|...|.+++|+|.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+ +++|+
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence 99999999998742 5689999999999999999876543 466778889999999999 89999
Q ss_pred EeeecCCCCcEEEEeeCCCCcee--EEEecc--cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001184 558 SCGTSKEGDSHLVEWNESEGALK--RTYIGF--RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
+++. ++.|++||+.++... ...... +...+.+++|+|++++|++++.||.|++|++..+...
T Consensus 226 s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 226 SVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred EEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 9986 899999999886421 122211 3447999999999999999999999999999865433
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.2e-29 Score=284.21 Aligned_cols=253 Identities=19% Similarity=0.287 Sum_probs=215.8
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~ 481 (1130)
++.+|.+.|++++|+||+++||+|+.||.|++||+..+. ......+.+|.+.|++++|+++ ++ +|++++.|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 578999999999999999999999999999999998433 2333467899999999999987 77 899999999999
Q ss_pred EEe-cCCC--eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc--ceeeecCCCccEEEEEEec-----
Q 001184 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSA----- 551 (1130)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1130)
+|| .+++ .+..+.+|...|.+++|++..++.+|++++.|+.|++||++... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 999 6665 77888899999999999876446899999999999999998874 3446677888999999999
Q ss_pred --------CCCeEEEeeecCCCCcEEEEeeCCCCc----eeEEEecccCceeEEEEEcCC---CCEEEEEeCCCcEEEEe
Q 001184 552 --------DGSRLFSCGTSKEGDSHLVEWNESEGA----LKRTYIGFRKKSAGVVQFDTT---RNRILAAGEDNQIKFWD 616 (1130)
Q Consensus 552 --------~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd 616 (1130)
++.++++++. ++.|++||++++. ....+.+|.. .+.+++|+|+ +++|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999986 8999999998765 3456666655 8999999999 89999999999999999
Q ss_pred CCCCc---eeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 617 MDNVN---MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 617 ~~~~~---~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.++. .........+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99875 2333333345558999999999999999999999999998754
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.9e-28 Score=283.14 Aligned_cols=233 Identities=20% Similarity=0.311 Sum_probs=206.9
Q ss_pred cCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD- 484 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd- 484 (1130)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 367778998887 89999999999999999999987554 67899999999999 677 899999999999999
Q ss_pred cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce---eeecCCCccEEEEEEecCCCeEEEeee
Q 001184 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR---VDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
.+++.+..+.+|...|.+++|++ ..+++++.||.|++||+++.... ..+..|...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 88999999999999999999852 58999999999999999887765 567788889999998 7889999986
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
++.|++||+.+++.+..+.+|.. .+.++.+ +++++++|+.||.|++||+.+++.+..+..+.. .|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe-
Confidence 89999999999999999998766 7888888 468999999999999999999999988876554 7899988
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCC
Q 001184 642 KEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 642 ~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
++.+|++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 6889999999999999998654
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-28 Score=283.61 Aligned_cols=299 Identities=10% Similarity=0.010 Sum_probs=232.7
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCc---eeecccceeeecccc----------------------------
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE---RLVSKPFKIWDMSNC---------------------------- 396 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 396 (1130)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+. .|.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAG-----KWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEE-----EEECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeee-----ecCCccccccccccccchhhccccccccccccccc
Confidence 4789999999998 46655 47899999999998 432 2221100
Q ss_pred ------------ccceeeeeecCCCccEEEEEEcCCCCEE-EEEeCCCeEEEEEec--CCccceeeeeeecCCCCeeEEE
Q 001184 397 ------------SMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQ--GSNDLCQSLEIDAHVGGVNDLA 461 (1130)
Q Consensus 397 ------------~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~V~~i~ 461 (1130)
....+.....+|.+.|.+++|+|||++| |+|+.||.|++||+. +++.+... ....|...|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEEE
Confidence 0000111234677789999999999996 899999999999999 77765532 1236788999999
Q ss_pred EecCCCceEEEEEcCCCcEEEEe-cCCCeee----EecCCCcCEEEEeeccc-CCccEEEEEecCCcEEEEEccCCccee
Q 001184 462 FSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF----QFEGHEAPVYSVCPHQK-ENIHFIFSTAVDGKIKAWLYDNVGSRV 535 (1130)
Q Consensus 462 ~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~ 535 (1130)
|+|+++ +|++|+.|+.|++|+ .++.... .+.+|...|.+++|+|+ ..+.+|++++.|+.|++||+++.....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 899999999999999 6665443 77899999999999875 225799999999999999999888776
Q ss_pred e-ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc------------------------Cce
Q 001184 536 D-YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR------------------------KKS 590 (1130)
Q Consensus 536 ~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------~~~ 590 (1130)
. +..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788899999999 9999999986 8999999999999888886431 235
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEeC--CCC---ceeEEEeccCCCCCcceEEEcCCCCEEEEEeC------CCcEEE
Q 001184 591 AGVVQFDTTRNRILAAG-EDNQIKFWDM--DNV---NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA------DQGIKI 658 (1130)
Q Consensus 591 v~~~~~~~~~~~l~~~~-~dg~i~vwd~--~~~---~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~------dg~i~i 658 (1130)
+..++|+|+++++++++ .|+.|++|++ ..+ +.+..+..+ ..+.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 78899999999999998 8999999999 555 556666655 37999999996544443332 456889
Q ss_pred EEcCCC
Q 001184 659 LANADG 664 (1130)
Q Consensus 659 w~~~~~ 664 (1130)
|.+...
T Consensus 387 ~~~~~~ 392 (450)
T 2vdu_B 387 IEYNLN 392 (450)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 887543
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3e-28 Score=276.54 Aligned_cols=295 Identities=16% Similarity=0.183 Sum_probs=234.5
Q ss_pred cCCCeeeEecCCCcCEEEEeecccC-CccEEEEEecCCcEEEEEccC-Ccce-eeecCCCccEEEEEEecCCCeEEEeee
Q 001184 485 LSGRKLFQFEGHEAPVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYDN-VGSR-VDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
...+.+..+.+|.+.|++++|++.. ++.+|++++.||.|++||+++ .... ..+..|...|.+++|+|++++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 5566778889999999999997652 258999999999999999987 3333 567778899999999999999999986
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEE--cCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEE
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQF--DTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
++.|++||+.+++.+.. .+|. ..+.+++| +++++++++++.||.|++||+.+++.+..+..+. .+.++.
T Consensus 107 ----dg~v~iwd~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~ 177 (368)
T 3mmy_A 107 ----DKTAKMWDLSSNQAIQI-AQHD-APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCYCAD 177 (368)
T ss_dssp ----TSEEEEEETTTTEEEEE-EECS-SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEEEEE
T ss_pred ----CCcEEEEEcCCCCceee-cccc-CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---CceEEE
Confidence 89999999999887764 4444 48999999 8999999999999999999999999988887654 455565
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCccccc
Q 001184 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1130)
Q Consensus 640 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~ 719 (1130)
+. ...+++++.++.+.+|++...........
T Consensus 178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------------------------------------- 208 (368)
T 3mmy_A 178 VI--YPMAVVATAERGLIVYQLENQPSEFRRIE----------------------------------------------- 208 (368)
T ss_dssp EE--TTEEEEEEGGGCEEEEECSSSCEEEEECC-----------------------------------------------
T ss_pred ec--CCeeEEEeCCCcEEEEEeccccchhhhcc-----------------------------------------------
Confidence 55 45788899999999999865411100000
Q ss_pred CCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCC
Q 001184 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT 799 (1130)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 799 (1130)
T Consensus 209 -------------------------------------------------------------------------------- 208 (368)
T 3mmy_A 209 -------------------------------------------------------------------------------- 208 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCE----EEEEe-CCeEEEEECCCc---eeEEEEe
Q 001184 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY----VMSAG-GGKVSLFNMMNF---KVMTTFM 871 (1130)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~----la~~~-dg~i~iwd~~~~---~~~~~~~ 871 (1130)
..+...+.++++.++... +++++ ||.|++||+... .....+.
T Consensus 209 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 209 ------------------------------SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp ------------------------------CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred ------------------------------ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 001222233333333332 66666 788888888776 5566666
Q ss_pred CCCC------------CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC
Q 001184 872 SPPP------------ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1130)
Q Consensus 872 ~~~~------------~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 939 (1130)
.|.. .|++++|+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+|||++|++++.|+
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred eeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 6665 799999999 889999999999999999999999999999999999999999999999999998
Q ss_pred cEEEEECCC
Q 001184 940 QLIFWNTDT 948 (1130)
Q Consensus 940 ~i~vwd~~~ 948 (1130)
..+.|++-.
T Consensus 338 ~~~~~~~~~ 346 (368)
T 3mmy_A 338 WSKGHEFYN 346 (368)
T ss_dssp STTCGGGCC
T ss_pred ccccccccC
Confidence 766666544
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.6e-28 Score=273.59 Aligned_cols=210 Identities=14% Similarity=0.194 Sum_probs=178.7
Q ss_pred eeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC----CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcE
Q 001184 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKI 523 (1130)
Q Consensus 449 ~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i 523 (1130)
.+.+|.+.|++++|+|+++ +|++|+.|+.|++|| .++ +.+..+.+|...|.+++|++..++.+|++++.||.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGR--HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSS--EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCC--EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 4679999999999999999 899999999999999 544 366778899999999999875456899999999999
Q ss_pred EEEEccCC---------cceeeecCCCccEEEEEEecC--CCeEEEeeecCCCCcEEEEeeCCCCceeEEEec-------
Q 001184 524 KAWLYDNV---------GSRVDYDAPGLWCTTMLYSAD--GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG------- 585 (1130)
Q Consensus 524 ~vwd~~~~---------~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~------- 585 (1130)
++||++.. .....+..+...|.+++|+|+ ++++++++. ++.|++||+++++.+..+..
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN----DGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET----TCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC----CCcEEEecCCChHHhcccccccccccc
Confidence 99999876 345677788899999999999 999999986 89999999988876544331
Q ss_pred -----ccCceeEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC----CEEEEEeCC
Q 001184 586 -----FRKKSAGVVQFDTT---RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG----NLLVVTTAD 653 (1130)
Q Consensus 586 -----~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~----~~l~~~~~d 653 (1130)
.+...+.+++|+|+ +.++++++.++.+.+|+...++.........+...|.+++|+|++ ++|++++.|
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 23347889999997 899999999999999988888764444444556689999999998 899999999
Q ss_pred CcEEEEEcCCC
Q 001184 654 QGIKILANADG 664 (1130)
Q Consensus 654 g~i~iw~~~~~ 664 (1130)
|.|++||+..+
T Consensus 240 g~i~iwd~~~~ 250 (351)
T 3f3f_A 240 GRIRIFKITEK 250 (351)
T ss_dssp SCEEEEEEEEC
T ss_pred CeEEEEeCCCC
Confidence 99999998765
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=2.5e-28 Score=280.66 Aligned_cols=246 Identities=15% Similarity=0.185 Sum_probs=206.3
Q ss_pred cEEEEEEcCCCCEE-EEEeCCCeEEEEEecCCcc-ceeeeeeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-cC
Q 001184 411 SVSRVAWSPDGNFI-GVAFTKHLIHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LS 486 (1130)
Q Consensus 411 ~V~~v~~spdg~~l-as~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~V~~i~~s~-d~~~l~l~s~s~d~~v~iwd-~~ 486 (1130)
....++++|+...+ ++++.||.|+||++..... ......+.+|.+.|++++|+| +++ +|++|+.|++|++|| .+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 34568899987654 4578899999999965422 223345789999999999999 787 899999999999999 56
Q ss_pred C-------CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee--cCCCccEEEEEEecCCCeEE
Q 001184 487 G-------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTTMLYSADGSRLF 557 (1130)
Q Consensus 487 ~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~ 557 (1130)
+ +.+..+.+|...|.+++|++.. ..+|++++.||.|++||+++.+....+ ..|...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 5 5688899999999999997643 259999999999999999999888888 78889999999999999999
Q ss_pred EeeecCCCCcEEEEeeCCCCceeEEE-ecccCceeEEEEEcCCCCEEEEE---eCCCcEEEEeCCCCce-eEEEeccCCC
Q 001184 558 SCGTSKEGDSHLVEWNESEGALKRTY-IGFRKKSAGVVQFDTTRNRILAA---GEDNQIKFWDMDNVNM-LTSTEAEGGL 632 (1130)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~vwd~~~~~~-~~~~~~~~~~ 632 (1130)
+++. ++.|++||+++++.+..+ .+|....+..+.|+|++.++++| +.|+.|++||+.+++. +..... .+.
T Consensus 193 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 267 (402)
T 2aq5_A 193 TSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTS 267 (402)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCC
T ss_pred EEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCC
Confidence 9986 899999999999999988 67766558899999999999998 7999999999998765 333332 233
Q ss_pred CCcceEEEcCCCCEEEEE-eCCCcEEEEEcCCC
Q 001184 633 PSLPRLRFNKEGNLLVVT-TADQGIKILANADG 664 (1130)
Q Consensus 633 ~~i~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~ 664 (1130)
..+.+++|+|++++|+++ +.||.|++|++.++
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 478999999999999755 47999999999776
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=8.1e-28 Score=270.27 Aligned_cols=277 Identities=14% Similarity=0.165 Sum_probs=214.0
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.|...|++++|||||+ +||+|+.++ ++|||+++++.... .+...+..++++++++.+
T Consensus 17 ~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNYV 73 (355)
T ss_dssp --CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSEE
T ss_pred cCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCEE
Confidence 4899999999999998 588888664 78999987765431 111247889999999888
Q ss_pred E-EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC-CeeeEecCCCcCEE
Q 001184 425 G-VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKLFQFEGHEAPVY 501 (1130)
Q Consensus 425 a-s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~-~~~~~~~~h~~~v~ 501 (1130)
+ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++|| .++ +.+..+.. +..
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred EEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CCc
Confidence 4 56778999999999987665 344 66789999999764 2333 378999999 665 66666654 333
Q ss_pred EEeecccCCccEEEE--EecCCcEEEEEccCCc----------------ceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 502 SVCPHQKENIHFIFS--TAVDGKIKAWLYDNVG----------------SRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s--~s~dg~i~vwd~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
.+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|++++.
T Consensus 142 ~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-- 215 (355)
T 3vu4_A 142 VCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-- 215 (355)
T ss_dssp EEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred eEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--
Confidence 444544 35555 5889999999998765 15678889999999999999999999986
Q ss_pred CCCcE-EEEeeCCCCceeEEEe-cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeE--EE-------------
Q 001184 564 EGDSH-LVEWNESEGALKRTYI-GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLT--ST------------- 626 (1130)
Q Consensus 564 ~~~~~-i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~------------- 626 (1130)
|++ |++||+++++.+..+. +.+...+.+++|+|++++|++++.|+.|++||+..+.... .+
T Consensus 216 --d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 216 --DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp --TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred --CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence 897 9999999999999998 5244589999999999999999999999999997653211 10
Q ss_pred -----ecc-CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 627 -----EAE-GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 627 -----~~~-~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
... ........++|+++++.+++++.||.+++|++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 011 11123477999999999999999999999998765
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3.2e-27 Score=265.40 Aligned_cols=239 Identities=10% Similarity=0.179 Sum_probs=187.3
Q ss_pred ecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001184 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd 484 (1130)
..+|...|.+++|+|||++||+|+.++ +++||+.+++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 568999999999999999999998775 7899998765432 1 22235888999998884 446788899999999
Q ss_pred -cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC-cceeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.+++++..+. |...|.++++++. .++.+ .|+.|++||+.+. +....+.. +...+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~~----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSRE----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECSS----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcCC----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 8888888887 6779999998642 34443 5889999999887 44444433 445566777 66766511
Q ss_pred CCCCcEEEEeeCCCCc----------------eeEEEecccCceeEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceeEE
Q 001184 563 KEGDSHLVEWNESEGA----------------LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-IKFWDMDNVNMLTS 625 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~ 625 (1130)
..++.|++||+.++. .+..+.+|.. .|.+++|+|++++|++|+.|++ |++||+.+++.+..
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 238999999998865 2677888766 8999999999999999999998 99999999999998
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 626 ~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+....+...|.+++|+|++++|++++.|++|++||+..+
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 873223448999999999999999999999999999765
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=9.5e-27 Score=246.13 Aligned_cols=219 Identities=17% Similarity=0.141 Sum_probs=165.6
Q ss_pred CccceEEEEEecc----CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEE
Q 001184 766 SASKVARLLYTNS----GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVAL 841 (1130)
Q Consensus 766 ~~~~i~~l~~s~~----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~ 841 (1130)
+...|.+++++|+ +..++.++.+ +.+|. +
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~-------------------------------------------l-- 142 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLG-------------------------------------------L-- 142 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEE-------------------------------------------E--
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEe-------------------------------------------c--
Confidence 4456788899999 8888887644 44553 1
Q ss_pred ecCCCEEEEEe---CCeEEEEEC-CCceeEEEEeCCCCCeEEEEEeC--CCCcEEEEEeCCCcEEEEEeecCeEEEEEec
Q 001184 842 SKNDSYVMSAG---GGKVSLFNM-MNFKVMTTFMSPPPASTFLAFHP--QDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG 915 (1130)
Q Consensus 842 s~dg~~la~~~---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~sp--~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 915 (1130)
++|+++.++. |+.|++|++ .+++.+..+.+|...++.++|++ +++.+||+|+.|++|+|||+++++++.++.+
T Consensus 143 -~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g 221 (356)
T 2w18_A 143 -TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI 221 (356)
T ss_dssp -TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred -CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC
Confidence 4566666654 788999998 55888888888999888888887 4679999999999999999999999999987
Q ss_pred CC---CCeeEEEEccCCCeE------------EEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 916 HQ---KHITGLAFSTNLNIL------------VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 916 h~---~~V~~l~~s~dg~~L------------~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
|. ..+.+++|+|||.++ ++++.|++|++||..+++.........+.++. ..+.+. +.++.++
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~-~~~lsg--~~sg~~l 298 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA-GRFLEG--DVKDHCA 298 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC-CCEEEE--EEETTEE
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc-ceeEcc--ccCCCEE
Confidence 54 367788999999876 56788999999999997765433333333432 223333 3337777
Q ss_pred EE-EcCCcEEEEECCCceeeeeeecCCCCCCC-eEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 981 LV-NHETQLAIYDGSKMECIRQWVPQDVLSSP-ISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 981 ~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~-v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
++ +.|++|+|||+.+++++..+.+| ... +.+++|||||++|++|+.|++|+|||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~gH---~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLPPV---SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCC-----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEecCC---CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 87 46999999999999999998766 444 456899999999999999999999995
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-28 Score=302.97 Aligned_cols=251 Identities=14% Similarity=0.207 Sum_probs=210.3
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC--CC
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD--GN 422 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~ 422 (1130)
+|.+.|++++|+|+|+ +|++|+.||.|+|||+.++.... ...+.+|.+.|.+++|+|+ ++
T Consensus 7 gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~-----------------~~~l~~h~~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 7 AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFGT 68 (753)
T ss_dssp -CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCTTSCS
T ss_pred cCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCcc-----------------ceeccCCcCceEEEEecCCCCCC
Confidence 5999999999999998 48999999999999998443221 1147799999999999998 99
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-cCC--CeeeEecCCC
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSG--RKLFQFEGHE 497 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~iwd-~~~--~~~~~~~~h~ 497 (1130)
+|++|+.||.|++||+.+++. .....+.+|...|++++|+|+ ++ .+++|+.||.|++|| .++ .....+.+|.
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred EEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence 999999999999999998752 233467889999999999999 88 899999999999999 444 3456677899
Q ss_pred cCEEEEeecccC-----------CccEEEEEecCCcEEEEEccCCc----ceeeecCCCccEEEEEEecC---CCeEEEe
Q 001184 498 APVYSVCPHQKE-----------NIHFIFSTAVDGKIKAWLYDNVG----SRVDYDAPGLWCTTMLYSAD---GSRLFSC 559 (1130)
Q Consensus 498 ~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~~---~~~l~~~ 559 (1130)
..|.+++|+|.. ++.++++|+.||.|++||++... ....+..|...|.+++|+|+ +++++++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 999999998742 56899999999999999998874 33466788899999999999 8999999
Q ss_pred eecCCCCcEEEEeeCCCCce-----eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 560 GTSKEGDSHLVEWNESEGAL-----KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 621 (1130)
+. ++.|++||+.++.. ......+ ...+.+++|+|+++++++++.||.|++|++..+.
T Consensus 226 s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 226 SQ----DRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ES----SSCEEEEEESSSSSCCBCCBSSSSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ec----CCEEEEecCCCCCCcceeEEeccCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 86 89999999988642 2222223 3478899999999999999999999999998643
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1e-27 Score=277.59 Aligned_cols=265 Identities=15% Similarity=0.240 Sum_probs=213.3
Q ss_pred eeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 340 ~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
....+.|.+.|++++|+|++..+||+|+.||.|+|||+.+...... ..........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 4556679999999999998545899999999999999976311100 0000011124779999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEEecCCccc----eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCC---Cee
Q 001184 420 DGN-FIGVAFTKHLIHLYTYQGSNDL----CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RKL 490 (1130)
Q Consensus 420 dg~-~las~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~---~~~ 490 (1130)
++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++|| .++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 9999999999999999874321 223456789999999999995444 899999999999999 544 577
Q ss_pred eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-CcceeeecCCCccEEEEEEecCCC-eEEEeeecCCCCcE
Q 001184 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGS-RLFSCGTSKEGDSH 568 (1130)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~ 568 (1130)
..+..|...|++++|++... .++++|+.||.|++||++. ......+..|...|.+++|+|+++ +|++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 88889999999999987432 4799999999999999998 455667888899999999999996 4677764 899
Q ss_pred EEEeeCCC--------------CceeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC
Q 001184 569 LVEWNESE--------------GALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNV 620 (1130)
Q Consensus 569 i~~wd~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~ 620 (1130)
|++||+.. .+.+..+.+|.. .+..++|+|+++ ++++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999976 355666666554 799999999999 8999999999999998753
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=6.5e-27 Score=272.16 Aligned_cols=304 Identities=10% Similarity=0.073 Sum_probs=243.1
Q ss_pred CcccccCC--cccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeee
Q 001184 328 QATWSLDD--LPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV 405 (1130)
Q Consensus 328 ~~~~~~~~--~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1130)
..+|..+. ........+.+...+.+++|+|+++ ++++++.++.|++||+.+++....... ..+
T Consensus 101 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~~--------------~~~ 165 (433)
T 3bws_A 101 EKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSPP--------------EKY 165 (433)
T ss_dssp TCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECCC--------------HHH
T ss_pred eEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecCc--------------ccc
Confidence 34444444 3335555666667788999999654 788888899999999999887642111 125
Q ss_pred cCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD- 484 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd- 484 (1130)
.+|.+.|.+++|+|+++++++++.|+.|++||+.+++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDR 241 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEEC
Confidence 6899999999999999999999999999999999877554 56689999999999999994 346777899999999
Q ss_pred cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe--------cCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeE
Q 001184 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA--------VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
.+++.+..+..+ ..+.+++|++ ++..+++++ .|+.|++||+++++....+ .+...+.+++|+|+++.+
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 242 KTKLEIRKTDKI-GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp TTTEEEEECCCC-SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEE
T ss_pred CCCcEEEEecCC-CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEE
Confidence 777777777654 4588998865 557888887 4889999999887655544 234468899999999877
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeC---------------CCcEEEEeCCCCc
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE---------------DNQIKFWDMDNVN 621 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~vwd~~~~~ 621 (1130)
++++. .++.|++||..+++.+..+.. ...+..++|+|+++++++++. ||.|++||+.+++
T Consensus 318 ~~~~~---~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDM---CCSKIEVYDLKEKKVQKSIPV--FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEET---TTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEec---CCCEEEEEECCCCcEEEEecC--CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 66542 388999999999988887763 336889999999999988876 5799999999999
Q ss_pred eeEEEeccCCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 001184 622 MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA-DQGIKILANA 662 (1130)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~-dg~i~iw~~~ 662 (1130)
.+..+.... .+.+++|+|++++|++++. |+.|++|+++
T Consensus 393 ~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 393 VKEFWEAGN---QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECSS---SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCCC---CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 888887633 6899999999999998875 9999999975
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=5.9e-26 Score=264.04 Aligned_cols=238 Identities=13% Similarity=0.158 Sum_probs=197.0
Q ss_pred CCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEE-EEEeCCCcEEEEEeecCe
Q 001184 831 NAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVRVDE 908 (1130)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~ 908 (1130)
+|...+.+++|+++++++++++ ++.|++||+.+++.+..+..|...+.+++|+| ++..+ ++++.|+.|++||+.+++
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTE
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCc
Confidence 4677889999999999999988 79999999999999999998999999999999 66655 566689999999999999
Q ss_pred EEEEEecCCCCeeEEEEccCCCeEEEEe--------CCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 909 VKTKLKGHQKHITGLAFSTNLNILVSSG--------SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 909 ~~~~l~~h~~~V~~l~~s~dg~~L~s~s--------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
.+..+..+ ..+.+++|+|+|++|++++ .|+.|++||+.+++...... +...+..++|+|++..+
T Consensus 246 ~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 246 EIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-------PPGNKRHIVSGNTENKI 317 (433)
T ss_dssp EEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-------EEECEEEEEECSSTTEE
T ss_pred EEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-------CCCCcceEEECCCCCEE
Confidence 98888765 4599999999999999988 58899999999865433221 11467899999999866
Q ss_pred EE--EcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC---------------CCcEEEEeCCCccc
Q 001184 981 LV--NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT---------------DGSIGVFDADSLRL 1043 (1130)
Q Consensus 981 ~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~---------------Dg~i~vwd~~~~~~ 1043 (1130)
++ +.++.+++||+.+++.+..+.. ...+.+++|+|||++|++++. ||.|++||+.+++.
T Consensus 318 ~~~~~~~~~v~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKKVQKSIPV----FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEEecCCCEEEEEECCCCcEEEEecC----CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 54 4689999999999998877753 468999999999999998886 57999999999988
Q ss_pred ccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEe-CCCcEEEEeCCC
Q 001184 1044 RCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGL-TDGSVKVIEPSE 1094 (1130)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~v~vW~~~~ 1094 (1130)
+..+... ..+..++|+|+ +.+|++++ .|+.|++|++..
T Consensus 394 ~~~~~~~------------~~~~~~~~s~d-g~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 394 KEFWEAG------------NQPTGLDVSPD-NRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEECS------------SSEEEEEECTT-SCEEEEEETTTTEEEEEEETT
T ss_pred EEEecCC------------CCCceEEEcCC-CCEEEEEECCCCeEEEEEecC
Confidence 7766521 23567899995 67777766 499999999863
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=3e-26 Score=262.54 Aligned_cols=274 Identities=10% Similarity=0.068 Sum_probs=221.2
Q ss_pred eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE-EEEeCCCeEEEEEec
Q 001184 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQ 439 (1130)
Q Consensus 361 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~d~~i~vwd~~ 439 (1130)
+++++++.|+.|++||+.+++.+. .+..|. .+.+++|+|||++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~-------------------~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA-------------------TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE-------------------EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE-------------------EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 578999999999999999988765 244554 58999999999987 667789999999999
Q ss_pred CCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEE-EEE
Q 001184 440 GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFI-FST 517 (1130)
Q Consensus 440 ~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~ 517 (1130)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++|| .+++.+..+.. ...+.+++|++ +++.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~--dg~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSP--DGKKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECT--TSSEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECC--CCCEEEEEe
Confidence 987554 344444 8999999999994 446677889999999 77777777764 45688999865 44555 788
Q ss_pred ecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEc
Q 001184 518 AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFD 597 (1130)
Q Consensus 518 s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 597 (1130)
+.|+.|++||+.+.+....+..+ ..+.+++|+|+++++++++. .++.|++||+.+++....+..+ ..+.+++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE--AAPSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS--SEEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC--CCccceEEC
Confidence 88999999999988777766654 45699999999998865432 3789999999999888777642 368889999
Q ss_pred CCCCEEEEEe---CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEE-EEEeCCCcEEEEEcCCCchhhhhhc
Q 001184 598 TTRNRILAAG---EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL-VVTTADQGIKILANADGLRALRAIE 672 (1130)
Q Consensus 598 ~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1130)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.|+.|++||+.++ +....+.
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~ 283 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMA 283 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEE
Confidence 9999999988 68999999999999888887654 47899999999987 56678999999999887 4444443
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.8e-26 Score=242.54 Aligned_cols=292 Identities=15% Similarity=0.164 Sum_probs=203.8
Q ss_pred eeEEEEe-cCCCceEEEEEcCCCcEEEEe-cCC---CeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC
Q 001184 457 VNDLAFS-YPNKQLCIVTCGDDKLIRVWD-LSG---RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV 531 (1130)
Q Consensus 457 V~~i~~s-~d~~~l~l~s~s~d~~v~iwd-~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~ 531 (1130)
+.++-|- +..+.+.+++++ +..|++|+ .++ ++++++.+|+.+|..+.+.|+..+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 4555553 344555667776 56899999 888 8899999999999999998755432222211
Q ss_pred cceeeecCCCccEEEEEEecC----CCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe
Q 001184 532 GSRVDYDAPGLWCTTMLYSAD----GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1130)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1130)
..+...|.+++++|| ++.+++++. .+.+|++ ++++.+.+++
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l-----------------------~~g~lv~ss~ 152 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGL-----------------------TKRRLVSSSG 152 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEE-----------------------TTTEEEEEES
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEec-----------------------CCCcEEEecc
Confidence 224456899999999 889988753 3556643 2333444432
Q ss_pred --CCCcEEEEeC-CCCceeEEEeccCCCCCcceEEEcC---CCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccc
Q 001184 608 --EDNQIKFWDM-DNVNMLTSTEAEGGLPSLPRLRFNK---EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRA 681 (1130)
Q Consensus 608 --~dg~i~vwd~-~~~~~~~~~~~~~~~~~i~~v~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 681 (1130)
.|+.|++|++ .+++.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.++ +.++.+.++.
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~------ 223 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDD------ 223 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC------
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCC------
Confidence 4888888888 44777777776665 678889988 7899999999999999999887 3333322110
Q ss_pred cccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEec
Q 001184 682 STEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMP 761 (1130)
Q Consensus 682 ~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 761 (1130)
T Consensus 224 -------------------------------------------------------------------------------- 223 (356)
T 2w18_A 224 -------------------------------------------------------------------------------- 223 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEE
Q 001184 762 ESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVAL 841 (1130)
Q Consensus 762 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~ 841 (1130)
.+...+.+++|+|+|..+++++.+..
T Consensus 224 ---~~v~~v~~vafSpdG~~lvs~s~~~~--------------------------------------------------- 249 (356)
T 2w18_A 224 ---SYQASVCHKAYSEMGLLFIVLSHPCA--------------------------------------------------- 249 (356)
T ss_dssp ------CCCEEEEEEETTEEEEEEC-------------------------------------------------------
T ss_pred ---cceeeeEEEEECCCCCEEEEeccCCC---------------------------------------------------
Confidence 02345677889999887777654211
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCceeEEEE-----eCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEec
Q 001184 842 SKNDSYVMSAG-GGKVSLFNMMNFKVMTTF-----MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG 915 (1130)
Q Consensus 842 s~dg~~la~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 915 (1130)
...+++|+ |++|++||..+++.+..+ .+|...+.+..+ ++.++|+|+.|++|+|||+.+++++.++.+
T Consensus 250 ---~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~g 323 (356)
T 2w18_A 250 ---KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPP 323 (356)
T ss_dssp -----------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred ---cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence 01356676 899999999999988776 355555444333 467899999999999999999999999999
Q ss_pred CCCCee-EEEEccCCCeEEEEeCCCcEEEEEC
Q 001184 916 HQKHIT-GLAFSTNLNILVSSGSDAQLIFWNT 946 (1130)
Q Consensus 916 h~~~V~-~l~~s~dg~~L~s~s~Dg~i~vwd~ 946 (1130)
|...+. .++|||||++|++|+.|++|+|||+
T Consensus 324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 988765 5899999999999999999999985
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.3e-27 Score=264.56 Aligned_cols=279 Identities=10% Similarity=0.070 Sum_probs=216.3
Q ss_pred EEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC
Q 001184 461 AFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539 (1130)
Q Consensus 461 ~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 539 (1130)
.+.+++. ++++|+.||+|++|| .+++.+..+. ...|.++.++|. +++++.|++|++|+.+.
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 3445666 899999999999999 8888888876 567777877664 99999999999998642
Q ss_pred CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC--CCCEEEEEeCCCcEEEEeC
Q 001184 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~ 617 (1130)
.+.+|+..+++.++.+...+...+.+++|+| +++++++++.||.|++||+
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 4677888888877777644445899999999 9999999999999999999
Q ss_pred CCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccc
Q 001184 618 DNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTIT 697 (1130)
Q Consensus 618 ~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 697 (1130)
.+++.+.....+. ...+.+++|+|++.+|++|+.||.|++||+.++......
T Consensus 157 ~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~--------------------------- 208 (343)
T 3lrv_A 157 EDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR--------------------------- 208 (343)
T ss_dssp SSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEE---------------------------
T ss_pred CCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccE---------------------------
Confidence 9999866654432 236999999999999999999999999998765100000
Q ss_pred cccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEec
Q 001184 698 PVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777 (1130)
Q Consensus 698 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 777 (1130)
T Consensus 209 -------------------------------------------------------------------------------- 208 (343)
T 3lrv_A 209 -------------------------------------------------------------------------------- 208 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEE
Q 001184 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVS 857 (1130)
Q Consensus 778 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~ 857 (1130)
+..+|...|.+++|+|+|.+|++++++.|+
T Consensus 209 --------------------------------------------------~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~ 238 (343)
T 3lrv_A 209 --------------------------------------------------FPVDEEAKIKEVKFADNGYWMVVECDQTVV 238 (343)
T ss_dssp --------------------------------------------------CCCCTTSCEEEEEECTTSSEEEEEESSBEE
T ss_pred --------------------------------------------------EeccCCCCEEEEEEeCCCCEEEEEeCCeEE
Confidence 001267788999999999999999877999
Q ss_pred EEECCCceeEEEEeC---CCCCe--EEEEEeCCCCcEEEEEeC-CCcEEEEEeecCeEEEEEecCCCCeeEEEEcc---C
Q 001184 858 LFNMMNFKVMTTFMS---PPPAS--TFLAFHPQDNNIIAIGME-DSTIQIYNVRVDEVKTKLKGHQKHITGLAFST---N 928 (1130)
Q Consensus 858 iwd~~~~~~~~~~~~---~~~~i--~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~---d 928 (1130)
+||+.+++.+..+.. |...+ .+++|+| ++++|++++. |+.|++|++.+....... .++..++|++ +
T Consensus 239 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 239 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTAD 313 (343)
T ss_dssp EEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CC
T ss_pred EEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccc
Confidence 999988876554442 33333 4699999 8999999988 999999999765432222 5577888988 8
Q ss_pred CCeEEEEeCCCcEEEEECCC
Q 001184 929 LNILVSSGSDAQLIFWNTDT 948 (1130)
Q Consensus 929 g~~L~s~s~Dg~i~vwd~~~ 948 (1130)
+..+++++.|+.+.++-...
T Consensus 314 ~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp CCEEEEEEETTEEEEEEECS
T ss_pred cceeEEEecCCceEEEEecC
Confidence 89999999999998886544
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.2e-26 Score=268.61 Aligned_cols=252 Identities=17% Similarity=0.264 Sum_probs=210.5
Q ss_pred eecCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEEecCC-------ccceeeeeeecCCCCeeEEEEecCCCceEEEEEc
Q 001184 404 IVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGS-------NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG 475 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spd-g~~las~~~d~~i~vwd~~~~-------~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s 475 (1130)
...+|.+.|++++|+|+ +.+||+++.||.|++||+... ........+.+|...|.+++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 45689999999999997 789999999999999999862 112334467899999999999999886 699999
Q ss_pred CCCcEEEEe-cCCCe-------eeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC---cceeeecCCCccE
Q 001184 476 DDKLIRVWD-LSGRK-------LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV---GSRVDYDAPGLWC 544 (1130)
Q Consensus 476 ~d~~v~iwd-~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~v 544 (1130)
.||.|++|| ..+.. ...+.+|...|.+++|++. ++.+|++++.||.|++||++.. .....+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999 44222 4567789999999999874 3479999999999999999976 4556677888899
Q ss_pred EEEEEecCCCe-EEEeeecCCCCcEEEEeeCCC-CceeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-
Q 001184 545 TTMLYSADGSR-LFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNV- 620 (1130)
Q Consensus 545 ~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~- 620 (1130)
++++|+|++.+ +++++. ++.|++||+++ +..+..+.+|.. .+.+++|+|+++ ++++++.||.|++||+...
T Consensus 281 ~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp EEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred EEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 99999999984 667765 89999999988 567888888655 899999999985 6899999999999999872
Q ss_pred -------------ceeEEEeccCCCCCcceEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 001184 621 -------------NMLTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1130)
Q Consensus 621 -------------~~~~~~~~~~~~~~i~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.+..... +...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 44444444 344799999999999 9999999999999998654
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=8.2e-26 Score=258.85 Aligned_cols=249 Identities=13% Similarity=0.107 Sum_probs=189.0
Q ss_pred ceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEE-EEEeCCCcEEEEEeecCeEEE
Q 001184 835 VVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVRVDEVKT 911 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~ 911 (1130)
.+.+++|+|++++|++++ ++.|++||+.+++.+..+..+ ..+.+++|+| +++.| ++++.|+.|++||+.+++.+.
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 678899999999886554 689999999999998888754 4689999999 66655 788889999999999999998
Q ss_pred EEecCCCCeeEEEEccCCCeE-EEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE----cCC
Q 001184 912 KLKGHQKHITGLAFSTNLNIL-VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN----HET 986 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~dg~~L-~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~----~d~ 986 (1130)
.+..|. .+.+++|+|++++| ++++.|+.|++||+.+++...... ....+..++|+|++.+++++ .++
T Consensus 153 ~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 153 TVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------VEAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp EEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------CSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred EEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-------cCCCccceEECCCCCEEEEEecCcCCC
Confidence 888764 57999999999988 577789999999999865432221 12568899999999988874 589
Q ss_pred cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEeCCCcccccccCCCccccc------CCCC
Q 001184 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLI-YATFTDGSIGVFDADSLRLRCRIAPSAYMSQ------ASPN 1059 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l-~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~ 1059 (1130)
.|++||+.+++.+..+..+ ..+.+++|+|||++| ++++.|+.|++||+.+++.+..+..+..... ..+.
T Consensus 225 ~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (391)
T 1l0q_A 225 TVSMIDTGTNKITARIPVG----PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPV 300 (391)
T ss_dssp EEEEEETTTTEEEEEEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSS
T ss_pred cEEEEECCCCeEEEEEecC----CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccc
Confidence 9999999999988887765 357899999999977 5667899999999999998877654432110 0000
Q ss_pred CceeeeEEEEEcCC-------CCCEEEEEeCCCcEEEEeCCCCcc
Q 001184 1060 SQTVFPLVVTSHPQ-------EPNQLAVGLTDGSVKVIEPSETER 1097 (1130)
Q Consensus 1060 ~~~~~~~~~~~~~~-------~~~~l~s~~~Dg~v~vW~~~~~~~ 1097 (1130)
++......+...+. ++..+...+.|..+.+|++.++..
T Consensus 301 ~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 301 QPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp CCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred cccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 11111111222221 114567777799999999977653
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.5e-27 Score=293.87 Aligned_cols=253 Identities=19% Similarity=0.281 Sum_probs=212.8
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d--~~~l~l~s~s~d~~v~ 481 (1130)
++.+|.+.|++++|+|+|++|++|+.||.|++||+.++. ......+.+|.+.|++++|+++ ++ ++++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 578999999999999999999999999999999998543 2334468899999999999998 77 899999999999
Q ss_pred EEe-cCCC--eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCc--ceeeecCCCccEEEEEEec-----
Q 001184 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSA----- 551 (1130)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1130)
+|| .+++ .+..+.+|...|.+++|+|..++.++++++.||.|++||++... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 999 6665 67888899999999999876446899999999999999998773 3446677888999999999
Q ss_pred --------CCCeEEEeeecCCCCcEEEEeeCCCC----ceeEEEecccCceeEEEEEcCC---CCEEEEEeCCCcEEEEe
Q 001184 552 --------DGSRLFSCGTSKEGDSHLVEWNESEG----ALKRTYIGFRKKSAGVVQFDTT---RNRILAAGEDNQIKFWD 616 (1130)
Q Consensus 552 --------~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd 616 (1130)
++.++++++. ++.|++||++++ .....+.+|.. .+.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999986 899999999877 45566777655 8999999999 89999999999999999
Q ss_pred CCCCcee---EEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 617 MDNVNML---TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 617 ~~~~~~~---~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+.+++.. .......+...|.+++|+|+++++++++.||.|++|++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 11222234557999999999999999999999999998764
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=6.7e-27 Score=266.86 Aligned_cols=303 Identities=12% Similarity=0.089 Sum_probs=200.2
Q ss_pred CCCEEEEEE---ecCCCeEEEEEeCcCeEEEEeCCCCceeec-----ccceeeecccccc-----ceeeeeecCCCccEE
Q 001184 347 GSSVVSMDF---HPFHHTLLVVGCGDGEITLWDVGLRERLVS-----KPFKIWDMSNCSM-----MLQAAIVKDSSISVS 413 (1130)
Q Consensus 347 ~~~V~~v~f---spdg~~llasg~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~ 413 (1130)
+....+++| +|++..+++.| .++.|++|+......... .....|....... .........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 445667777 46666556655 477899998643221110 0111111110000 001112334555566
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCccce--eeeeeecCCCCeeEEEEec--------CCCceEEEEEcCCCcEEEE
Q 001184 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLC--QSLEIDAHVGGVNDLAFSY--------PNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 414 ~v~~spdg~~las~~~d~~i~vwd~~~~~~~~--~~~~~~~h~~~V~~i~~s~--------d~~~l~l~s~s~d~~v~iw 483 (1130)
...+++++++||+++.|++|++||+.++.... ....+.+|.+.|++++|+| |++ +|+||+.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 66677788899999999999999999886543 2235789999999999998 777 89999999999999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-------------------------
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY------------------------- 537 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~------------------------- 537 (1130)
| .++.++..+.+|..+|.+++|+|.. ..+|++++.|++|++||+++.......
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 9 7788888888999999999998743 358999999999999999876543321
Q ss_pred cCCCccEEEEEEe-cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEE------------------EEEcC
Q 001184 538 DAPGLWCTTMLYS-ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGV------------------VQFDT 598 (1130)
Q Consensus 538 ~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~------------------~~~~~ 598 (1130)
..+...+.++.|+ ++++.+++++. ++.+++||+.+++....+..+.. .+.. ..++|
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred ccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEcc
Confidence 2345567888887 79999999976 89999999988776665544332 1211 22333
Q ss_pred -CC-CEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 599 -TR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 599 -~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.+ .++++|+.||.|++||+.+++.......+.. +|.+++|+|||++||+++.+| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 23 3566788999999999999988877766554 799999999999999998776 556654
No 126
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9e-26 Score=263.29 Aligned_cols=286 Identities=12% Similarity=0.098 Sum_probs=227.5
Q ss_pred ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc---eeEEEecccC------------------------------
Q 001184 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA---LKRTYIGFRK------------------------------ 588 (1130)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~------------------------------ 588 (1130)
.++.+++|+++|++|+++. ++.|++||+.+++ .+..+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-----~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-----KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-----TTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-----CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 4678999999999777664 7899999999998 6666553221
Q ss_pred -----------------------ceeEEEEEcCCCCEE-EEEeCCCcEEEEeCC--CCceeEEEeccCCCCCcceEEEcC
Q 001184 589 -----------------------KSAGVVQFDTTRNRI-LAAGEDNQIKFWDMD--NVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 589 -----------------------~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
..|.+++|+|++++| ++++.||.|++||+. +++.+..+..+.+...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 158999999999996 889999999999999 888888887655555899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCC
Q 001184 643 EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGAD 722 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1130)
++++|++++.+|.+++|++.++......
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~---------------------------------------------------- 187 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFT---------------------------------------------------- 187 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCC----------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEecCCccccccc----------------------------------------------------
Confidence 9999999999999999998765210000
Q ss_pred ccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEecc---CCeEEEeeeCCeEEeeecCCC
Q 001184 723 SAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS---GIGILALWSNGVQKLWKWNRT 799 (1130)
Q Consensus 723 ~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~---g~~l~~~~~dg~i~iw~~~~~ 799 (1130)
+. .+ .+|...|.+++|+|+ +..+++++.|+.|++|++..+
T Consensus 188 ------------------~~--~~-----------------~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 188 ------------------QE--PI-----------------LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp ------------------CC--CS-----------------EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred ------------------ce--ee-----------------ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 00 00 127788999999999 999999999999999986542
Q ss_pred CCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeC------
Q 001184 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS------ 872 (1130)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~------ 872 (1130)
..+.. +..+|...|.+++|+ ++++|++++ |+.|++||+.+++++..+..
T Consensus 231 ----------------------~~~~~-~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~ 286 (450)
T 2vdu_B 231 ----------------------FIVDK-WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKP 286 (450)
T ss_dssp ----------------------TCEEE-ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGG
T ss_pred ----------------------ceeee-eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhh
Confidence 11111 123688999999999 999999998 89999999999999888863
Q ss_pred -------------------CCCCeEEEEEeCCCCcEEEEEe-CCCcEEEEEe--ecC---eEEEEEecCCCCeeEEEEcc
Q 001184 873 -------------------PPPASTFLAFHPQDNNIIAIGM-EDSTIQIYNV--RVD---EVKTKLKGHQKHITGLAFST 927 (1130)
Q Consensus 873 -------------------~~~~i~~l~~sp~~~~~lasg~-~dg~v~iwd~--~~~---~~~~~l~~h~~~V~~l~~s~ 927 (1130)
....|.+++|+| ++++|++++ .|+.|++|++ .++ +.+..+.+| +.|.+++|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 287 YLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp GCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred hhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence 235689999999 888898888 8999999999 666 778888888 8899999999
Q ss_pred CCCeEEEE-eC------CCcEEEEECCC
Q 001184 928 NLNILVSS-GS------DAQLIFWNTDT 948 (1130)
Q Consensus 928 dg~~L~s~-s~------Dg~i~vwd~~~ 948 (1130)
++ .+++. +. +..|.+|.+..
T Consensus 365 ~~-~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 365 DE-FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp TE-EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred Cc-EEEEEecccCCCCCCcceEEEEEEc
Confidence 64 44444 32 45588888764
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.5e-27 Score=262.16 Aligned_cols=267 Identities=9% Similarity=0.069 Sum_probs=210.0
Q ss_pred EEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeE
Q 001184 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1130)
Q Consensus 354 ~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i 433 (1130)
.+.++++ ++++|+.||.|+|||+.+++.+.. +. ...|.+++|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 4456676 699999999999999999887652 11 356778889998 9999999999
Q ss_pred EEEEec---------CCccceeeeeeecCCCCeeEEEEec--CCCceEEEEEcCCCcEEEEe-cCCCeeeEec-CCCcCE
Q 001184 434 HLYTYQ---------GSNDLCQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-GHEAPV 500 (1130)
Q Consensus 434 ~vwd~~---------~~~~~~~~~~~~~h~~~V~~i~~s~--d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~-~h~~~v 500 (1130)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++++.|++|++|| .+++.+..+. .|...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999765 3332221 1236778999999999 998 899999999999999 7777766664 455689
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcce-eeecC-CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.+++|+| ++.+|++|+.||.|++||+++.... ..+.. |..+|.+++|+|+|.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 9999965 5689999999999999999998877 67777 889999999999999999997 4499999999987
Q ss_pred eeEEEecccC--cee--EEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC---CCCEEEEE
Q 001184 579 LKRTYIGFRK--KSA--GVVQFDTTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK---EGNLLVVT 650 (1130)
Q Consensus 579 ~~~~~~~~~~--~~v--~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~---~~~~l~~~ 650 (1130)
....+..+.. ..+ .+++|+|++++|++++. |+.+++|++......... .++..+.|++ +...++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 7655443111 122 36999999999999998 999999999766543332 1466778888 88899999
Q ss_pred eCCCcEEEEEcC
Q 001184 651 TADQGIKILANA 662 (1130)
Q Consensus 651 ~~dg~i~iw~~~ 662 (1130)
+.|+.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 999999987543
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.7e-25 Score=261.35 Aligned_cols=332 Identities=12% Similarity=0.069 Sum_probs=257.4
Q ss_pred cCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC--CCCceeEEEec
Q 001184 508 KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE--SEGALKRTYIG 585 (1130)
Q Consensus 508 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~ 585 (1130)
++++.++++++.|++|.+||..+++....+..... +..++|+|||++|++++. ++.|.+||+ .+++.+..+..
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~----d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEEEEC
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECC----CCeEEEEECcCCCCcEEEEEec
Confidence 34567889999999999999999888877764333 889999999999999985 699999999 88888888874
Q ss_pred ccCceeEEEEEcC----CCCEEEEEeC-CCcEEEEeCCCCceeEEEeccC---------CCCCcceEEEcCCCCE-EEEE
Q 001184 586 FRKKSAGVVQFDT----TRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEG---------GLPSLPRLRFNKEGNL-LVVT 650 (1130)
Q Consensus 586 ~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~---------~~~~i~~v~~s~~~~~-l~~~ 650 (1130)
......++|+| +|+++++++. ++.|.+||..+++++..+...+ ....+..+.++|++.. +++.
T Consensus 221 --g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 221 --GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp --CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred --CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 23578899999 9999999884 8999999999999998887532 1225778899996654 4556
Q ss_pred eCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCC
Q 001184 651 TADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEK 730 (1130)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1130)
..++.|.+||..+.... .
T Consensus 299 ~~~g~i~vvd~~~~~~l-~------------------------------------------------------------- 316 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNL-T------------------------------------------------------------- 316 (543)
T ss_dssp TTTTEEEEEECTTSSSC-E-------------------------------------------------------------
T ss_pred CCCCeEEEEEecCCCcc-e-------------------------------------------------------------
Confidence 67888999987554100 0
Q ss_pred cccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccc
Q 001184 731 PRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAA 810 (1130)
Q Consensus 731 ~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 810 (1130)
+.. +
T Consensus 317 ------------~~~---------------------------------------------i------------------- 320 (543)
T 1nir_A 317 ------------VTS---------------------------------------------I------------------- 320 (543)
T ss_dssp ------------EEE---------------------------------------------E-------------------
T ss_pred ------------eEE---------------------------------------------e-------------------
Confidence 000 0
Q ss_pred cccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeC----CCCCeEEEEEeC
Q 001184 811 VAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS----PPPASTFLAFHP 884 (1130)
Q Consensus 811 ~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~sp 884 (1130)
.+...+..++|+|||+++++++ +++|.+||..+++++..+.. |.+....+ ++|
T Consensus 321 --------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 321 --------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp --------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred --------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 0123355689999999877665 78999999999999988874 54444333 578
Q ss_pred CCCcEEEEEe-CCCcEEEEEeec-------CeEEEEEecCCCCeeEEEEccCCCeEEEEe-------CCCcEEEEECCCC
Q 001184 885 QDNNIIAIGM-EDSTIQIYNVRV-------DEVKTKLKGHQKHITGLAFSTNLNILVSSG-------SDAQLIFWNTDTW 949 (1130)
Q Consensus 885 ~~~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-------~Dg~i~vwd~~~~ 949 (1130)
+++.+++++. .|++|.+||+.+ +++++++.+|.+.+..++|+|||++|++++ .+++|.+||+.++
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 5578888876 689999999998 899999999999999999999999999987 2779999999998
Q ss_pred ccc-ceeeEecc--CCCCCCCeEEEEEcCCCcEEEEE------cCCcEEEEECCCceeeeeeecC
Q 001184 950 EKR-KSIAIQLP--AGKLPVGETRVQFHSDQVRLLVN------HETQLAIYDGSKMECIRQWVPQ 1005 (1130)
Q Consensus 950 ~~~-~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~ 1005 (1130)
+.. ....+... .......+..+.|+|||+.+.++ .++.|.|||.++++++..+...
T Consensus 460 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 460 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 764 22111100 01123678999999999999974 2689999999999999888754
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=6.3e-25 Score=259.34 Aligned_cols=274 Identities=11% Similarity=0.099 Sum_probs=215.7
Q ss_pred EEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeec-CCCccEEEEEEcCCCCEEEEEeCCCe
Q 001184 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-DSSISVSRVAWSPDGNFIGVAFTKHL 432 (1130)
Q Consensus 354 ~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~las~~~d~~ 432 (1130)
+|+|+++ ++++++.|++|.+||..+++++.. +. ++. +.+++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3789886 789999999999999999988752 33 443 889999999999999999999
Q ss_pred EEEEEe--cCCccceeeeeeecCCCCeeEEEEec----CCCceEEEEEc-CCCcEEEEe-cCCCeeeEecCC--------
Q 001184 433 IHLYTY--QGSNDLCQSLEIDAHVGGVNDLAFSY----PNKQLCIVTCG-DDKLIRVWD-LSGRKLFQFEGH-------- 496 (1130)
Q Consensus 433 i~vwd~--~~~~~~~~~~~~~~h~~~V~~i~~s~----d~~~l~l~s~s-~d~~v~iwd-~~~~~~~~~~~h-------- 496 (1130)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+|| .+++++..+..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7766544 444 455689999999 999 666666 589999999 888988887642
Q ss_pred --C-cCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee--eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 497 --E-APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV--DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 497 --~-~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
. ..+.++.+++.. ..++++...++.|.+||+.+.+... .+. +...+..+.|+|+|+++++++. .+++|.+
T Consensus 276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~---~~~~v~v 350 (543)
T 1nir_A 276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAAN---NSNKVAV 350 (543)
T ss_dssp EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEG---GGTEEEE
T ss_pred cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEec---CCCeEEE
Confidence 2 368888887643 3677888889999999998765433 332 4556788999999998887653 2779999
Q ss_pred eeCCCCceeEEEec----ccCceeEEEEEcCC-CCEEEEEe-CCCcEEEEeCCC-------CceeEEEeccCCCCCcceE
Q 001184 572 WNESEGALKRTYIG----FRKKSAGVVQFDTT-RNRILAAG-EDNQIKFWDMDN-------VNMLTSTEAEGGLPSLPRL 638 (1130)
Q Consensus 572 wd~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~vwd~~~-------~~~~~~~~~~~~~~~i~~v 638 (1130)
||..+++++..+.. |.. ....+ ++|+ +..++++. .|++|.+||+.+ .+.+.++..++. .+..+
T Consensus 351 ~D~~tg~l~~~i~~g~~ph~g-~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v 426 (543)
T 1nir_A 351 IDSKDRRLSALVDVGKTPHPG-RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFI 426 (543)
T ss_dssp EETTTTEEEEEEECSSSBCCT-TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCE
T ss_pred EECCCCeEEEeeccCCCCCCC-CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEE
Confidence 99999999988874 222 12222 5777 45555654 589999999998 889999987764 57889
Q ss_pred EEcCCCCEEEEEeC-------CCcEEEEEcCCC
Q 001184 639 RFNKEGNLLVVTTA-------DQGIKILANADG 664 (1130)
Q Consensus 639 ~~s~~~~~l~~~~~-------dg~i~iw~~~~~ 664 (1130)
.++|++++|++++. +++|.+||+.+.
T Consensus 427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred EcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 99999999999872 679999998776
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1e-26 Score=265.26 Aligned_cols=247 Identities=9% Similarity=-0.015 Sum_probs=174.6
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC-----
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP----- 419 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp----- 419 (1130)
.|...+....++|+++ +||+|+.|++|+|||+.+++...... ...+.+|.+.|.+++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEEECTT
T ss_pred ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEccccccc
Confidence 4555666666777776 79999999999999999887653211 124789999999999998
Q ss_pred ---CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeE---
Q 001184 420 ---DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ--- 492 (1130)
Q Consensus 420 ---dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~--- 492 (1130)
||++||+|+.|++|+|||+.++.++. .+.+|...|.+++|+|++.. +|++++.|++|++|| .+++....
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence 89999999999999999998876444 46779999999999999865 799999999999999 55543322
Q ss_pred ----------------------ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEE-
Q 001184 493 ----------------------FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLY- 549 (1130)
Q Consensus 493 ----------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~- 549 (1130)
..+|...+.++.|.. +++..|++++.|+++++||+........+..+...+..+.+
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 246778888888863 56789999999999999999876655554444333333322
Q ss_pred -----------------ec-CCCe-EEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC
Q 001184 550 -----------------SA-DGSR-LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN 610 (1130)
Q Consensus 550 -----------------s~-~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1130)
.| .+.. +++++. ++.|++||..+++....+.+|.. .|.+++|+|+|++|++++.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~----Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQ----HGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETT----TTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECC----CCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC
Confidence 22 2334 444443 89999999999999888887766 899999999999999998766
Q ss_pred cEEEEeC
Q 001184 611 QIKFWDM 617 (1130)
Q Consensus 611 ~i~vwd~ 617 (1130)
+.+|.+
T Consensus 382 -v~lvrL 387 (393)
T 4gq1_A 382 -VLLTRL 387 (393)
T ss_dssp -EEEEEE
T ss_pred -eEEEEE
Confidence 556654
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=6.8e-23 Score=255.91 Aligned_cols=302 Identities=12% Similarity=0.091 Sum_probs=209.6
Q ss_pred CCCEEEEEEecCCCeEEEEEeC-cC-----eEEEEeCCCCceeecccceeeecc-----cccccee-eeeecCCCccEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCG-DG-----EITLWDVGLRERLVSKPFKIWDMS-----NCSMMLQ-AAIVKDSSISVSR 414 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~h~~~V~~ 414 (1130)
...|.+++|||||++ |++++. |+ .|++||+.+++............. ......+ ..-+ .....|.+
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRI-AAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhh-ccccCcce
Confidence 567999999999995 777776 88 899999999876542110000000 0000000 0000 00134889
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCc--cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee
Q 001184 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSN--DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF 491 (1130)
Q Consensus 415 v~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~ 491 (1130)
++|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++|| .+++...
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999999986 899999999872 222 3667888999999999999 677776 56899999 4554444
Q ss_pred EecCCCcC----------------EEEEeecccCCccEEEEEecCC---------------------------------c
Q 001184 492 QFEGHEAP----------------VYSVCPHQKENIHFIFSTAVDG---------------------------------K 522 (1130)
Q Consensus 492 ~~~~h~~~----------------v~~~~~~~~~~~~~l~s~s~dg---------------------------------~ 522 (1130)
....+... +.+++|+ +||+.|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 33333332 3667775 5668888887765 7
Q ss_pred EEEEEccC-Ccceeeec--CCCccEEEEEEecCCCeEEEeeec-CCCCcEEEEeeCCCCceeEEEecccCc---eeEEEE
Q 001184 523 IKAWLYDN-VGSRVDYD--APGLWCTTMLYSADGSRLFSCGTS-KEGDSHLVEWNESEGALKRTYIGFRKK---SAGVVQ 595 (1130)
Q Consensus 523 i~vwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~ 595 (1130)
|.+||+.+ ++...... .+...+..++| |||++|++++.+ ...+..|++||..+++....+..+... .+..++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 88899887 66544332 35668999999 999999987642 234688999999999888777665432 235789
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCC-CCceeEEEeccCCCCCcceE-EEcCCCCEEEEEe-CCC--cEEEEEcCC
Q 001184 596 FDTTRNRILAAGEDNQIKFWDMD-NVNMLTSTEAEGGLPSLPRL-RFNKEGNLLVVTT-ADQ--GIKILANAD 663 (1130)
Q Consensus 596 ~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~i~~v-~~s~~~~~l~~~~-~dg--~i~iw~~~~ 663 (1130)
|+|+|+++++++.||.+++|.++ .+. ...+..+. ..+..+ .|+|+++.|+..+ .++ .++||++..
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 99999988889999988888765 344 55554432 356676 5999998776554 444 889998753
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.3e-23 Score=240.79 Aligned_cols=296 Identities=10% Similarity=0.026 Sum_probs=223.9
Q ss_pred CCCEEEEEEecCCCeEEEEEe----CcC----eEEEEeC--CCCceeecccceeeeccccccceeeeeecCCCccEEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGC----GDG----EITLWDV--GLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 416 (1130)
...|...+|++.|..++++|+ .|| +|+|||+ .+++.+... .+.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence 357788899999987788886 467 8999999 888866321 3557777777777
Q ss_pred EcC--------------CCCEEEEEeCC------CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC
Q 001184 417 WSP--------------DGNFIGVAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1130)
Q Consensus 417 ~sp--------------dg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~ 476 (1130)
+++ .+..+++++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 764 26677776654 799999998643 33 5678999999999999999 7888887
Q ss_pred CC---cEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEE-EEecCCc--EEEEEccCCcceeeecCCCccEEEEEE
Q 001184 477 DK---LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIF-STAVDGK--IKAWLYDNVGSRVDYDAPGLWCTTMLY 549 (1130)
Q Consensus 477 d~---~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~ 549 (1130)
|+ .|++|| .+++. ..+..|...+.+++|+| +++.|+ +++.++. |++||++++.. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcE-EEeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 999999 55555 46778889999999965 556666 6666665 89999987654 456667778999999
Q ss_pred ecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeEEE
Q 001184 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---NQIKFWDMDNVNMLTST 626 (1130)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~ 626 (1130)
+|||++|++++. .++...|++||..+++.. .+..+ ...+..++|+|+|++|++++.+ +.|++||+.+++.. .+
T Consensus 275 spdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l 350 (415)
T 2hqs_A 275 FPDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL 350 (415)
T ss_dssp CTTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC
T ss_pred CCCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecC-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Ee
Confidence 999999998873 233458999999887753 33333 3367889999999999988764 58999999988774 33
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEeCCC---cEEEEEcCCCchhhhhhccccccc
Q 001184 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQ---GIKILANADGLRALRAIETRAYET 678 (1130)
Q Consensus 627 ~~~~~~~~i~~v~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~ 678 (1130)
..+. .+.+++|+|+|++|++++.++ .|++|++..+ ..+.+..+...+
T Consensus 351 ~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~~~v 400 (415)
T 2hqs_A 351 SSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQV 400 (415)
T ss_dssp CCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSSEE
T ss_pred cCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCCCCC
Confidence 3322 689999999999999988877 7999998654 344455544443
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=4.2e-22 Score=248.72 Aligned_cols=246 Identities=10% Similarity=0.030 Sum_probs=184.3
Q ss_pred CccEEEEEEcCCCCEEEEEeC-CC-----eEEEEEecCCccceeeeeeecCC----------------------CCeeEE
Q 001184 409 SISVSRVAWSPDGNFIGVAFT-KH-----LIHLYTYQGSNDLCQSLEIDAHV----------------------GGVNDL 460 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~-d~-----~i~vwd~~~~~~~~~~~~~~~h~----------------------~~V~~i 460 (1130)
...|.+++|||||++||+++. |+ .|++||+.+++.... .....+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL-VDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE-ECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc-cchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999999999998 88 899999999875431 1112222 238899
Q ss_pred EEecCCCceEEEEEcCCCcEEEEecCCC---eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee
Q 001184 461 AFSYPNKQLCIVTCGDDKLIRVWDLSGR---KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY 537 (1130)
Q Consensus 461 ~~s~d~~~l~l~s~s~d~~v~iwd~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 537 (1130)
+|||||+ .|++++. +.|++||..+. .+..+..|...+..++|+| ||+.|++++ ++.|++||+.++......
T Consensus 115 ~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 115 QWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp EECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred EECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 9999999 6777765 99999995444 6677888889999999965 567888877 569999999876655433
Q ss_pred cCCCcc----------------EEEEEEecCCCeEEEeeecCC-----------------------------CCcEEEEe
Q 001184 538 DAPGLW----------------CTTMLYSADGSRLFSCGTSKE-----------------------------GDSHLVEW 572 (1130)
Q Consensus 538 ~~~~~~----------------v~~~~~s~~~~~l~~~~~~~~-----------------------------~~~~i~~w 572 (1130)
..+... +.+++|+|||++|++++.+.. ....|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 333322 477999999999999875321 11288999
Q ss_pred eCCC-CceeEEEec-ccCceeEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCceeEEEeccCCC--CCcceEEEcCC
Q 001184 573 NESE-GALKRTYIG-FRKKSAGVVQFDTTRNRILAAGE-----DNQIKFWDMDNVNMLTSTEAEGGL--PSLPRLRFNKE 643 (1130)
Q Consensus 573 d~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~--~~i~~v~~s~~ 643 (1130)
|+.+ ++....... .+...+..++| |||++|++++. +..|++||+.+++....+..+... ..+..++|+||
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence 9988 876554433 23447888999 99999987654 567999999999887766554321 13568999999
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 001184 644 GNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~ 662 (1130)
|+++++++.+|.++||.++
T Consensus 348 g~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRID 366 (741)
T ss_dssp SCEEEEECTTSSCEEEEEC
T ss_pred CeEEEEecCCCccEEEEEc
Confidence 9988888889888888754
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=2.2e-22 Score=230.71 Aligned_cols=290 Identities=11% Similarity=0.042 Sum_probs=213.7
Q ss_pred ccccCCC----CCccccc--CCcccceeeec-cCCCCEEEEEEecC--------------CCeEEEEEeC--c---CeEE
Q 001184 320 ATYPVPS----QQATWSL--DDLPRAVACTM-HQGSSVVSMDFHPF--------------HHTLLVVGCG--D---GEIT 373 (1130)
Q Consensus 320 ~~~s~~~----~~~~~~~--~~~~~~~~~~~-~h~~~V~~v~fspd--------------g~~llasg~~--d---g~i~ 373 (1130)
+.+..+| .+.+|+. ..........+ +|...+..+++++. +.++++++.. + +.|+
T Consensus 83 ~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~ 162 (415)
T 2hqs_A 83 VTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELR 162 (415)
T ss_dssp EEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEE
T ss_pred EEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEE
Confidence 3344566 6777877 43321111223 48888888888861 5554444433 2 7999
Q ss_pred EEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCC---eEEEEEecCCccceeeeee
Q 001184 374 LWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH---LIHLYTYQGSNDLCQSLEI 450 (1130)
Q Consensus 374 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~---~i~vwd~~~~~~~~~~~~~ 450 (1130)
+||+.++... .+.+|...|.+++|||||++||+++.++ .|++||+.+++.. .+
T Consensus 163 i~d~~g~~~~--------------------~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----~l 218 (415)
T 2hqs_A 163 VSDYDGYNQF--------------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QV 218 (415)
T ss_dssp EEETTSCSCE--------------------EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EE
T ss_pred EEcCCCCCCE--------------------EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE----Ee
Confidence 9999854432 3567889999999999999999999885 9999999998753 36
Q ss_pred ecCCCCeeEEEEecCCCceEEEEEcCCCc--EEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEec-CC--cEEE
Q 001184 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKL--IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DG--KIKA 525 (1130)
Q Consensus 451 ~~h~~~V~~i~~s~d~~~l~l~s~s~d~~--v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~v 525 (1130)
..|.+.+.+++|+|||+. ++++++.|+. |++||..+.....+..|...+.+++|+| +++.|++++. ++ .|.+
T Consensus 219 ~~~~~~~~~~~~spdg~~-la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp ECCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT--TSSEEEEEECTTSSCEEEE
T ss_pred ecCCCcccCEEEcCCCCE-EEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC--CCCEEEEEECCCCCcEEEE
Confidence 678889999999999994 3337766655 9999954444577888999999999965 5677887775 45 5777
Q ss_pred EEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEE
Q 001184 526 WLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILA 605 (1130)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 605 (1130)
||+.++.. ..+..+...+.+++|+|+|++|++++.. ++...|++||+.+++.. .+..+. .+..++|+|+|++|++
T Consensus 296 ~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 296 VNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLSSTF--LDETPSLAPNGTMVIY 370 (415)
T ss_dssp EETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCCEE-ECCCSS--SCEEEEECTTSSEEEE
T ss_pred EECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECc-CCceEEEEEECCCCCEE-EecCCC--CcCCeEEcCCCCEEEE
Confidence 78876553 3445566788999999999999988752 23579999999988774 444432 6888999999999999
Q ss_pred EeCCC---cEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC
Q 001184 606 AGEDN---QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1130)
Q Consensus 606 ~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 644 (1130)
++.++ .|++||+.. .....+..+. ..|.+++|+|..
T Consensus 371 ~s~~~~~~~l~~~d~~g-~~~~~l~~~~--~~v~~~~~~~~~ 409 (415)
T 2hqs_A 371 SSSQGMGSVLNLVSTDG-RFKARLPATD--GQVKFPAWSPYL 409 (415)
T ss_dssp EEEETTEEEEEEEETTS-CCEEECCCSS--SEEEEEEECCCC
T ss_pred EEcCCCccEEEEEECCC-CcEEEeeCCC--CCCcCCcccccc
Confidence 88777 799999874 4455555443 379999999954
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=6.5e-23 Score=255.42 Aligned_cols=288 Identities=9% Similarity=0.086 Sum_probs=208.7
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCc---cEEEEEEcCCCCEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI---SVSRVAWSPDGNFI 424 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~spdg~~l 424 (1130)
..+.+++|||||+ ++++ +.||+|++||+.+++... ++.+|.. .|.+++|||||++|
T Consensus 17 ~~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l 75 (723)
T 1xfd_A 17 IHDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYA 75 (723)
T ss_dssp CCCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEE
T ss_pred ccccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEE
Confidence 3567889999998 4666 689999999999987653 3445554 49999999999999
Q ss_pred EEEeCC---------CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEec
Q 001184 425 GVAFTK---------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1130)
Q Consensus 425 as~~~d---------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~ 494 (1130)
|+++.+ +.|.+||+.+++. .......+|...+..++|||||+ .|+.++. +.|++|| .+++......
T Consensus 76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence 999874 7888999999875 32223345666699999999999 5677665 7999999 6666655555
Q ss_pred CCCcCE------------------EEEeecccCCccEEEEEecCC----------------------------------c
Q 001184 495 GHEAPV------------------YSVCPHQKENIHFIFSTAVDG----------------------------------K 522 (1130)
Q Consensus 495 ~h~~~v------------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~ 522 (1130)
.+...+ .+++|+ +||+.|++++.|+ .
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S--pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 229 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS 229 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred CCCCCceECcccceeEEEEeccCcceEEEC--CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence 444333 678885 5668888887653 7
Q ss_pred EEEEEccCCcceeeecCC------CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCcee----E
Q 001184 523 IKAWLYDNVGSRVDYDAP------GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA----G 592 (1130)
Q Consensus 523 i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~ 592 (1130)
|++||+.++.....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..++...+ .
T Consensus 230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 309 (723)
T 1xfd_A 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE 309 (723)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCC
Confidence 999999887754555543 557899999999998877764434467899999999988776655433333 3
Q ss_pred EEEEcCCCCEEEE--EeCCC------cEEEEe-CCCCce--eEEEeccCCCCCcce-EEEcCCCCEEEEEeCC---CcEE
Q 001184 593 VVQFDTTRNRILA--AGEDN------QIKFWD-MDNVNM--LTSTEAEGGLPSLPR-LRFNKEGNLLVVTTAD---QGIK 657 (1130)
Q Consensus 593 ~~~~~~~~~~l~~--~~~dg------~i~vwd-~~~~~~--~~~~~~~~~~~~i~~-v~~s~~~~~l~~~~~d---g~i~ 657 (1130)
.++|+|+|+.|+. ...++ .|++|| ..++.. ...+... + ..+.. ++|+|||+.|+..+.+ +.++
T Consensus 310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 387 (723)
T 1xfd_A 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRRQ 387 (723)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcceE
Confidence 6899999997765 44566 577788 444441 3333321 1 13444 6899999999877665 7889
Q ss_pred EEEcCCC
Q 001184 658 ILANADG 664 (1130)
Q Consensus 658 iw~~~~~ 664 (1130)
+|++...
T Consensus 388 l~~~~~~ 394 (723)
T 1xfd_A 388 LYSANTV 394 (723)
T ss_dssp EEEECSS
T ss_pred EEEEeCC
Confidence 9987643
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=7.6e-21 Score=211.86 Aligned_cols=280 Identities=11% Similarity=0.068 Sum_probs=203.3
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeC-CC
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT-KH 431 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~-d~ 431 (1130)
..|.+++++++++++.++.|.+||..+++.... +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777877889999999999999999987652 23445556 9999999997776665 88
Q ss_pred eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC-C--cEEEEe-cCCCeeeEecCCCcCEEEEeecc
Q 001184 432 LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-K--LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQ 507 (1130)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d-~--~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~ 507 (1130)
.|.+||+.+++.. ...+..+..+..+++|+|||+ +++++..+ + .|.+|| .+++.+..+.. .....+++|+|
T Consensus 63 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~sp 137 (331)
T 3u4y_A 63 TLVQIETQLEPPK--VVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISP 137 (331)
T ss_dssp EEEEEECSSSSCE--EEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECT
T ss_pred eEEEEECCCCcee--EEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECC
Confidence 9999999998751 224555666666699999999 56655544 3 899999 67777777664 44568898865
Q ss_pred cCCcc-EEEEEecCCc-EEEEEccCCccee----eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce--
Q 001184 508 KENIH-FIFSTAVDGK-IKAWLYDNVGSRV----DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL-- 579 (1130)
Q Consensus 508 ~~~~~-~l~s~s~dg~-i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-- 579 (1130)
+++ ++++...++. |.+|+++...... ........+..++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 138 --dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 138 --NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp --TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred --CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 445 4455566688 9999988654432 22233456899999999998776653 378999999999988
Q ss_pred -eEEEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCce--eEEEecc--CCCC---CcceEEEcCCCCEEEEE
Q 001184 580 -KRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNM--LTSTEAE--GGLP---SLPRLRFNKEGNLLVVT 650 (1130)
Q Consensus 580 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~--~~~~~~~--~~~~---~i~~v~~s~~~~~l~~~ 650 (1130)
+..+... ..+..++|+|+|+++++++ .++.|.+||+.+++. +..+... .... ....++|+|++++|+++
T Consensus 213 ~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 7777643 3567899999999777665 578899999999887 4433322 1111 12458999999988766
Q ss_pred eC-CCcEEEEEcCCC
Q 001184 651 TA-DQGIKILANADG 664 (1130)
Q Consensus 651 ~~-dg~i~iw~~~~~ 664 (1130)
+. ++.|.+|++...
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 55 569999998765
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=7.9e-22 Score=245.61 Aligned_cols=382 Identities=10% Similarity=0.079 Sum_probs=248.3
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCc--eeEEEEEcCCCCEEEEEeCC---------CcE
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK--SAGVVQFDTTRNRILAAGED---------NQI 612 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d---------g~i 612 (1130)
+.+++|+|||+++++ +. ++.|++||..+++....+.++... .+..++|+|||++|++++.+ +.+
T Consensus 19 ~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 567899999997765 32 789999999999988777765431 38889999999999998764 788
Q ss_pred EEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccce
Q 001184 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1130)
Q Consensus 613 ~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1130)
++||+.+++.........+...+..++|||||+.|+.++. +.|++|++.++. ..+....+...+
T Consensus 94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~~~-------------- 157 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKEGV-------------- 157 (723)
T ss_dssp EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEEECCCBTTT--------------
T ss_pred EEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEEecCCCCCc--------------
Confidence 8999999876322222223334789999999999999886 799999987762 111111000000
Q ss_pred eeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEE
Q 001184 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1130)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1130)
+..+ +.-|-.. ..-...+..
T Consensus 158 ---------------------------------------~~~g-----~~~~v~~----------------ee~~~~~~~ 177 (723)
T 1xfd_A 158 ---------------------------------------IYNG-----LSDWLYE----------------EEILKTHIA 177 (723)
T ss_dssp ---------------------------------------EEEE-----ECCHHHH----------------HTTSSSSEE
T ss_pred ---------------------------------------eECc-----ccceeEE----------------EEeccCcce
Confidence 0000 0000000 001234578
Q ss_pred EEEeccCCeEEEeeeC-CeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEE
Q 001184 773 LLYTNSGIGILALWSN-GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1130)
Q Consensus 773 l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1130)
++|+|||+.|++++.+ +.+.+|++.... ..+...+..+.++++|.. .
T Consensus 178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~G~~---~ 225 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAINDSRVPIMELPTYT-----------------------------GSIYPTVKPYHYPKAGSE---N 225 (723)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCS-----------------------------SSSSCCCEEEECCBTTSC---C
T ss_pred EEECCCCCEEEEEEECCCccceEEeeccC-----------------------------CcCCCcceeccCCCCCCC---C
Confidence 9999999999988764 456666543210 012234678888888863 1
Q ss_pred eCCeEEEEECCCceeEEEEeCC------CCCeEEEEEeCCCCcEEEEEeC----CCcEEEEEeecCeEEEEEecC-CCCe
Q 001184 852 GGGKVSLFNMMNFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGME----DSTIQIYNVRVDEVKTKLKGH-QKHI 920 (1130)
Q Consensus 852 ~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~~~~~lasg~~----dg~v~iwd~~~~~~~~~l~~h-~~~V 920 (1130)
.+..|++||+.+++....+..+ ...+..++|+| |+++|++... +..|++||+.++++...+..+ .+.+
T Consensus 226 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 304 (723)
T 1xfd_A 226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWL 304 (723)
T ss_dssp CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred CeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEE
Confidence 2457999999998876666654 56789999999 8888876653 357999999999877766543 3444
Q ss_pred e----EEEEccCCCeEEEE--eCCC------cEEEEE-CCCCcccceeeEeccCCCCCCCeEE-EEEcCCCcEEEE-EcC
Q 001184 921 T----GLAFSTNLNILVSS--GSDA------QLIFWN-TDTWEKRKSIAIQLPAGKLPVGETR-VQFHSDQVRLLV-NHE 985 (1130)
Q Consensus 921 ~----~l~~s~dg~~L~s~--s~Dg------~i~vwd-~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~d~~~l~~-~~d 985 (1130)
. .++|+|||++|+.. ..++ .|.+|| ..+++... ...+..++ ..+.. ++|+|||+.|+. +.+
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGD--WDVTKILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSS--SCEEEEEEEETTTTEEEEEESS
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc--eeEeecCC--eEEEeeeEEcCCCCEEEEEEcC
Confidence 3 78999999988754 4566 466777 34432000 01111111 23443 699999999876 443
Q ss_pred ---CcEEEEECCCce--eeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-C--cEEEEeCCCccc
Q 001184 986 ---TQLAIYDGSKME--CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-G--SIGVFDADSLRL 1043 (1130)
Q Consensus 986 ---~~i~v~d~~~~~--~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-g--~i~vwd~~~~~~ 1043 (1130)
+.+++|++.... ....+.....+...+..++|||||++|+..... + ...+++..++..
T Consensus 381 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~ 446 (723)
T 1xfd_A 381 DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKK 446 (723)
T ss_dssp SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCE
T ss_pred CCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCE
Confidence 778999986432 233333211135678899999999988876532 2 234456555443
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=2e-20 Score=210.63 Aligned_cols=276 Identities=9% Similarity=0.092 Sum_probs=212.0
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeC------cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCG------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
......+..++|+|+|++++++... ++.|.+||..+++.+.. +. ....+..++|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~~ 96 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGATI 96 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEEE
Confidence 4456789999999999975444433 67899999999887652 11 1234678999
Q ss_pred cCCCCEEEEE-eCCCeEEEEEecCCccceeeeeeecCCC---------CeeEEEEecCCCceEEEEE-cCCCcEEEEe-c
Q 001184 418 SPDGNFIGVA-FTKHLIHLYTYQGSNDLCQSLEIDAHVG---------GVNDLAFSYPNKQLCIVTC-GDDKLIRVWD-L 485 (1130)
Q Consensus 418 spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~---------~V~~i~~s~d~~~l~l~s~-s~d~~v~iwd-~ 485 (1130)
+|||++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+|+.+ ++++ +.++.|.+|| .
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l-~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTV-YISGIGKESVIWVVDGG 172 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEE-EEEEESSSCEEEEEETT
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEE-EEEecCCCceEEEEcCC
Confidence 9999966554 557999999999987554 2333322 27899999999952 3333 4688999999 7
Q ss_pred CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecC----CCccEEEEEEecCCCeEEEeee
Q 001184 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA----PGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
+++.+..+..+...+.+++|++ +++.+++++.++.|.+||..+.+....+.. +...+..++|+|+|++++++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred CCceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 7888888775666688888864 557899999999999999998877765554 3446888999999998887763
Q ss_pred cCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEEE
Q 001184 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1130)
.++.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|
T Consensus 251 ---~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 321 (353)
T 3vgz_A 251 ---KAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLAL 321 (353)
T ss_dssp ---SSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEE
T ss_pred ---CCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEE
Confidence 36899999999999888877533 24588999999776665 68999999999999888876543 5789999
Q ss_pred cCCCCEEEEEeCCC
Q 001184 641 NKEGNLLVVTTADQ 654 (1130)
Q Consensus 641 s~~~~~l~~~~~dg 654 (1130)
+|+|++++++..++
T Consensus 322 s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 322 SADGKTLYVSVKQK 335 (353)
T ss_dssp CTTSCEEEEEEECC
T ss_pred cCCCCEEEEEEccc
Confidence 99999888776654
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=8.5e-21 Score=235.35 Aligned_cols=237 Identities=9% Similarity=-0.008 Sum_probs=166.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEecCCccc-eeeeeeecCC-----------------CCeeEEEEecCCCceEEEE
Q 001184 412 VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHV-----------------GGVNDLAFSYPNKQLCIVT 473 (1130)
Q Consensus 412 V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~-----------------~~V~~i~~s~d~~~l~l~s 473 (1130)
+..+.|+ |+.+++++.|+ | +||+.+++.+ .. +..|. ..|.+++|+|| +. ++++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~-~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL-VVLF 98 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-TE-EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-Ce-EEEE
Confidence 4557888 66777777788 8 9999998752 32 22222 56999999999 52 3444
Q ss_pred EcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-----CcceeeecCCCcc-----
Q 001184 474 CGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-----VGSRVDYDAPGLW----- 543 (1130)
Q Consensus 474 ~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~~~~~~~----- 543 (1130)
.++.|++||..+.....+..+...+.+++|+| +|+.|+++ .|+.|++||+.+ ++...........
T Consensus 99 --~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 99 --TQGGLVGFDMLARKVTYLFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp --ETTEEEEEETTTTEEEEEECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred --ECCEEEEEECCCCceEEccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 35999999954455556666777888888865 56788874 789999999987 6555433333222
Q ss_pred ---------EEEEEEecCCCeEEEeeec-----------------------------CCCCcEEEEeeCCCCceeEEEec
Q 001184 544 ---------CTTMLYSADGSRLFSCGTS-----------------------------KEGDSHLVEWNESEGALKRTYIG 585 (1130)
Q Consensus 544 ---------v~~~~~s~~~~~l~~~~~~-----------------------------~~~~~~i~~wd~~~~~~~~~~~~ 585 (1130)
+.+++|+|||++|++++.+ ...+..|++||+.+++.......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 4789999999999998632 11357899999998876554432
Q ss_pred -ccCceeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceeEEEeccCCC---CCcceEEEcC--CCCEEEEEeCCC
Q 001184 586 -FRKKSAGVVQFDTTRNRILAAGEDN-----QIKFWDMDNVNMLTSTEAEGGL---PSLPRLRFNK--EGNLLVVTTADQ 654 (1130)
Q Consensus 586 -~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~---~~i~~v~~s~--~~~~l~~~~~dg 654 (1130)
.+...+..++|+|+|++|++++.++ .|++||+.+++....+...... ..+..++|+| ||++++++..++
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 2334688999999999999988775 8999999998443333222111 1346789999 999999998899
Q ss_pred cEEEEEcC
Q 001184 655 GIKILANA 662 (1130)
Q Consensus 655 ~i~iw~~~ 662 (1130)
.+++|.++
T Consensus 334 ~~~l~~~~ 341 (706)
T 2z3z_A 334 WNHLYLYD 341 (706)
T ss_dssp SCEEEEEE
T ss_pred ccEEEEEE
Confidence 88888764
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2.2e-20 Score=208.05 Aligned_cols=290 Identities=11% Similarity=0.039 Sum_probs=199.9
Q ss_pred EEeccCCe-EEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe
Q 001184 774 LYTNSGIG-ILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1130)
Q Consensus 774 ~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1130)
.|.+++.. +++...++.|.+||... ++...... .+...+ +++|+|||+++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~--~~~~~~-~~~~s~dg~~l~~~~ 58 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT----------------------LEILNQIT--LGYDFV-DTAITSDCSNVVVTS 58 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT----------------------CCEEEEEE--CCCCEE-EEEECSSSCEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc----------------------cceeeeEE--ccCCcc-eEEEcCCCCEEEEEe
Confidence 34555555 45556688998887543 32222111 134445 999999999777665
Q ss_pred --CCeEEEEECCCcee-EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC---cEEEEEeecCeEEEEEecCCCCeeEEEEc
Q 001184 853 --GGKVSLFNMMNFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGMEDS---TIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1130)
Q Consensus 853 --dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 926 (1130)
++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++ .|++||+.+++.+..+..+ ....+++|+
T Consensus 59 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 59 DFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp STTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred CCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 68999999999988 777776666666699999 788888665553 8999999999988887754 446899999
Q ss_pred cCCCeEEEE-eCCCc-EEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEECCCcee---e
Q 001184 927 TNLNILVSS-GSDAQ-LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKMEC---I 999 (1130)
Q Consensus 927 ~dg~~L~s~-s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~~---~ 999 (1130)
|||++|+++ ..++. |.+|++.............. ........++|+|||++++++ .++.|.+||+.+++. +
T Consensus 137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~ 214 (331)
T 3u4y_A 137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI--SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLL 214 (331)
T ss_dssp TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE--CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc--cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccccee
Confidence 999866655 45588 99999986443222111111 112457899999999977663 478999999999888 6
Q ss_pred eeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCccc--ccccCCCcccccCCCCCcee-eeEEEEEcCCCC
Q 001184 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRL--RCRIAPSAYMSQASPNSQTV-FPLVVTSHPQEP 1075 (1130)
Q Consensus 1000 ~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 1075 (1130)
..+... ..+..++|+|||++|++++ .++.|.+||+.+++. +..+...... +.... ....++|+|+ +
T Consensus 215 ~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~spd-g 284 (331)
T 3u4y_A 215 NAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI-----DPRPLFGANQMALNKT-E 284 (331)
T ss_dssp EEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC-----CCGGGTTCCCEEECTT-S
T ss_pred eeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc-----CCCCcccccceEECCC-C
Confidence 666543 5678999999999777665 478899999999887 2222211000 00101 1134788995 5
Q ss_pred CEE-EEEeCCCcEEEEeCCCCccCCccc
Q 001184 1076 NQL-AVGLTDGSVKVIEPSETERKWGVA 1102 (1130)
Q Consensus 1076 ~~l-~s~~~Dg~v~vW~~~~~~~~w~~~ 1102 (1130)
.+| +++..++.|.+||+.+....+...
T Consensus 285 ~~l~v~~~~~~~v~v~d~~~~~~~~~~~ 312 (331)
T 3u4y_A 285 TKLFISANISRELKVFTISGKVVGYVAG 312 (331)
T ss_dssp SEEEEEETTTTEEEEEETTSCEEEECTT
T ss_pred CEEEEecCCCCcEEEEEecCCcccceec
Confidence 555 555567799999999877655333
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.7e-20 Score=232.72 Aligned_cols=282 Identities=9% Similarity=0.066 Sum_probs=184.4
Q ss_pred EEEEEEecCCCeEEEEEeCcCeEEEEeCCCCcee-ecccceeeeccccccc--eeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERL-VSKPFKIWDMSNCSMM--LQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 350 V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
+..+.|+ |+. +++++.|+ | +||+.+|+.+ .. +.+....... ........+...|.+++|||| ++++.
T Consensus 28 ~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~----l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTT----RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVL 97 (706)
T ss_dssp CTTCEEE--TTE-EEEEETTE-E-EEEC-------CE----EEEHHHHHTTC-----------CCCEEEEETTT-TEEEE
T ss_pred CCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEE----eechhHhhhhccchhccccccccCceeEEECCC-CeEEE
Confidence 4557788 544 55566677 8 9999998762 10 1110000000 000000112256999999999 66666
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cC-----CCeeeEecCCCcC-
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS-----GRKLFQFEGHEAP- 499 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~-----~~~~~~~~~h~~~- 499 (1130)
+. ++.|++||+.+++.. .+..+...+.+++|||||+ .|+++ .|+.|++|| .+ ++.......+...
T Consensus 98 ~~-~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVT----YLFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp EE-TTEEEEEETTTTEEE----EEECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred EE-CCEEEEEECCCCceE----EccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 64 599999999987543 3456777899999999999 56664 689999999 55 6555444444433
Q ss_pred -------------EEEEeecccCCccEEEEEe---------------------------------cCCcEEEEEccCCcc
Q 001184 500 -------------VYSVCPHQKENIHFIFSTA---------------------------------VDGKIKAWLYDNVGS 533 (1130)
Q Consensus 500 -------------v~~~~~~~~~~~~~l~s~s---------------------------------~dg~i~vwd~~~~~~ 533 (1130)
+.+++|+ +|++.|++++ .+..|.+||+.++..
T Consensus 170 ~~g~~~~~ee~~~~~~~~~S--pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWS--PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp EESSCCGGGCTTCCCSEEEC--TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred EcccchhhhhcCCCceEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 3677775 5668888887 446799999988765
Q ss_pred eeeec--CCCccEEEEEEecCCCeEEEeeecC-CCCcEEEEeeCCCCceeEEEe-cccCc---eeEEEEEcC--CCCEEE
Q 001184 534 RVDYD--APGLWCTTMLYSADGSRLFSCGTSK-EGDSHLVEWNESEGALKRTYI-GFRKK---SAGVVQFDT--TRNRIL 604 (1130)
Q Consensus 534 ~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~-~~~~~---~v~~~~~~~--~~~~l~ 604 (1130)
..... .+...+.+++|+|||++|++++.+. .....|++||..+++....+. ..... .+..++|+| +|++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~ 327 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW 327 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence 44332 3556799999999999999876522 123589999999984433332 22221 235678999 999999
Q ss_pred EEeCCCcEEEEeCC-CCceeEEEeccCCCCCcce-EEEcCCCCEEEEEeCC
Q 001184 605 AAGEDNQIKFWDMD-NVNMLTSTEAEGGLPSLPR-LRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 605 ~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~i~~-v~~s~~~~~l~~~~~d 653 (1130)
+++.|+.+++|+++ ++..+..+..+. ..+.. ++|+|+++.|+.++.+
T Consensus 328 ~~~~~g~~~l~~~~~~~~~~~~l~~~~--~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTGRLIRQVTKGE--WEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EECTTSSCEEEEEETTSCEEEECCCSS--SCEEEEEEECTTSSEEEEEESS
T ss_pred EEccCCccEEEEEECCCCEEEecCCCC--eEEEeeeEEcCCCCEEEEEecC
Confidence 99999999999876 566666665432 24655 7999999988766554
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.6e-20 Score=205.22 Aligned_cols=257 Identities=14% Similarity=0.125 Sum_probs=190.2
Q ss_pred EEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecC-Ccc
Q 001184 365 VGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG-SND 443 (1130)
Q Consensus 365 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~-~~~ 443 (1130)
.++.|+.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34678999999999887653 446788999999999999999987 78999999998 764
Q ss_pred ceeeeeeecC-CCCeeEEEEecCCCceEEEEEc--CCCcEEEEe--cCCCeeeEecCCCcCEEEEeecccCCccEEE-EE
Q 001184 444 LCQSLEIDAH-VGGVNDLAFSYPNKQLCIVTCG--DDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIF-ST 517 (1130)
Q Consensus 444 ~~~~~~~~~h-~~~V~~i~~s~d~~~l~l~s~s--~d~~v~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~ 517 (1130)
.. ...+| ...|.+++|+||++ ++++++ .++..+||. ..+.....+..+. .+..++|++ +++.|+ ++
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~ 147 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSP--DGKSFTYCG 147 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECT--TSSEEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECC--CCCEEEEEE
Confidence 43 23344 46789999999999 677776 445566665 4555556665444 488888865 446665 78
Q ss_pred ecCCcEEEEEccCC-cceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC-CCceeEEEecccCceeEEEE
Q 001184 518 AVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGALKRTYIGFRKKSAGVVQ 595 (1130)
Q Consensus 518 s~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~ 595 (1130)
+.++.+++|+++.. .....+..+...+.+++|+|+|+++++++. .++.+.+|++. .+.....+..+. ..+..++
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~ 223 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSA-YGDWFPH 223 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCS-EEEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCC-cccCCeE
Confidence 89999999997543 334455666678999999999999887752 14566666654 344555665544 3788899
Q ss_pred EcCCCCEEEEEeCC-----------CcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCC
Q 001184 596 FDTTRNRILAAGED-----------NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1130)
Q Consensus 596 ~~~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg 654 (1130)
|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|+++.|++++.+.
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999988765 569999999887655444333344789999999999998887654
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=2.2e-19 Score=201.07 Aligned_cols=274 Identities=13% Similarity=0.153 Sum_probs=190.5
Q ss_pred CCeEEEEEeCcCeEEEEeCCC-CceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC-CeEEEE
Q 001184 359 HHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK-HLIHLY 436 (1130)
Q Consensus 359 g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d-~~i~vw 436 (1130)
+++++++++.|+.|++||+.. ++.... ....|...+.+++|+|||++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 345666668899999999963 332210 122466788999999999999998886 999999
Q ss_pred Eec--CCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEec-CC---CeeeEecCCCcCEEEEeecccCC
Q 001184 437 TYQ--GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SG---RKLFQFEGHEAPVYSVCPHQKEN 510 (1130)
Q Consensus 437 d~~--~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~-~~---~~~~~~~~h~~~v~~~~~~~~~~ 510 (1130)
++. +++ ......+..+. .+.+++|+|+++. +++++..++.|.+||. ++ +.+..+.. ...+.+++|++ +
T Consensus 66 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~--d 139 (343)
T 1ri6_A 66 RIAPDDGA-LTFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP--D 139 (343)
T ss_dssp EECTTTCC-EEEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT--T
T ss_pred EecCCCCc-eeeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC--C
Confidence 998 544 22333444444 7899999999994 3445556899999994 33 23334443 34578888865 5
Q ss_pred ccEEEEEe-cCCcEEEEEccC-Cccee----eec-CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC--CCce--
Q 001184 511 IHFIFSTA-VDGKIKAWLYDN-VGSRV----DYD-APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGAL-- 579 (1130)
Q Consensus 511 ~~~l~s~s-~dg~i~vwd~~~-~~~~~----~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~-- 579 (1130)
++.+++++ .++.|.+||+.. +.... ... .....+..++|+|+++++++++. .++.|.+|++. +++.
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 56777776 899999999987 33221 222 23446889999999998877652 37899999984 3443
Q ss_pred eEEEeccc-----CceeEEEEEcCCCCEEEEE-eCCCcEEEEeCC--CC--ceeEEEeccCCCCCcceEEEcCCCCEEEE
Q 001184 580 KRTYIGFR-----KKSAGVVQFDTTRNRILAA-GEDNQIKFWDMD--NV--NMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1130)
Q Consensus 580 ~~~~~~~~-----~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~--~~--~~~~~~~~~~~~~~i~~v~~s~~~~~l~~ 649 (1130)
...+.... ...+..++|+|++++++++ ..++.|++||+. ++ +.+..+.... .+..++|+|++++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22222111 1245579999999988754 478999999998 33 3344444332 3789999999998888
Q ss_pred Ee-CCCcEEEEEcC
Q 001184 650 TT-ADQGIKILANA 662 (1130)
Q Consensus 650 ~~-~dg~i~iw~~~ 662 (1130)
++ .++.+.+|+++
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 87 58999999664
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=2.2e-19 Score=201.03 Aligned_cols=272 Identities=11% Similarity=0.131 Sum_probs=183.8
Q ss_pred EEEEEecCCcEEEEEccCCc--ceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC--CCce--eEEEecc
Q 001184 513 FIFSTAVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGAL--KRTYIGF 586 (1130)
Q Consensus 513 ~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~ 586 (1130)
++++++.|+.|++|+++... .......+...+.+++|+|+|++|++++. .++.|.+|++. +++. +..+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeec---CCCeEEEEEecCCCCceeeccccccC
Confidence 44455789999999996432 22222335557889999999999998874 14899999987 5553 3344432
Q ss_pred cCceeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCC---ceeEEEeccCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEc
Q 001184 587 RKKSAGVVQFDTTRNRILAAGE-DNQIKFWDMDNV---NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILAN 661 (1130)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~---~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~ 661 (1130)
. .+..++|+|+++++++++. ++.|++||+..+ +.+..+.. ...+.+++|+|+++++++++ .++.|.+|++
T Consensus 84 -~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 158 (343)
T 1ri6_A 84 -G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG---LDGCHSANISPDNRTLWVPALKQDRICLFTV 158 (343)
T ss_dssp -S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC---CTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred -C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC---CCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence 2 6778999999998877765 888999999533 34444332 23588999999999888887 8899999998
Q ss_pred CCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCc
Q 001184 662 ADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKT 741 (1130)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 741 (1130)
.+...... .
T Consensus 159 ~~~~~~~~-~---------------------------------------------------------------------- 167 (343)
T 1ri6_A 159 SDDGHLVA-Q---------------------------------------------------------------------- 167 (343)
T ss_dssp CTTSCEEE-E----------------------------------------------------------------------
T ss_pred cCCCceee-e----------------------------------------------------------------------
Confidence 65200000 0
Q ss_pred cceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCC
Q 001184 742 KPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1130)
Q Consensus 742 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1130)
.. . .+.
T Consensus 168 -----------------------------~~----------------~---~~~-------------------------- 173 (343)
T 1ri6_A 168 -----------------------------DP----------------A---EVT-------------------------- 173 (343)
T ss_dssp -----------------------------EE----------------E---EEE--------------------------
T ss_pred -----------------------------cc----------------c---ccc--------------------------
Confidence 00 0 000
Q ss_pred cceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCC--cee--EEEEeC---C---CCCeEEEEEeCCCCcE
Q 001184 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMN--FKV--MTTFMS---P---PPASTFLAFHPQDNNI 889 (1130)
Q Consensus 822 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~--~~~--~~~~~~---~---~~~i~~l~~sp~~~~~ 889 (1130)
. .....+.+++|+|+|+++++++ ++.|.+|++.. ++. ...... . ...+..++|+| ++++
T Consensus 174 ------~--~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~ 244 (343)
T 1ri6_A 174 ------T--VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRH 244 (343)
T ss_dssp ------C--STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSE
T ss_pred ------c--CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCE
Confidence 0 1123455677888887665543 67788888743 332 222221 1 23567899999 6665
Q ss_pred EE-EEeCCCcEEEEEee--c--CeEEEEEecCCCCeeEEEEccCCCeEEEEe-CCCcEEEEECC
Q 001184 890 IA-IGMEDSTIQIYNVR--V--DEVKTKLKGHQKHITGLAFSTNLNILVSSG-SDAQLIFWNTD 947 (1130)
Q Consensus 890 la-sg~~dg~v~iwd~~--~--~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~i~vwd~~ 947 (1130)
|+ ++..++.|++|++. + .+.+..+..+.. +.+++|+|||++|++++ .++.|.+|+++
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 55 55578999999998 3 355556665555 89999999999998888 58999999665
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=1.7e-19 Score=201.39 Aligned_cols=198 Identities=13% Similarity=0.113 Sum_probs=153.3
Q ss_pred eEEEEecCCCEEEEE-------------eCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001184 837 PCVALSKNDSYVMSA-------------GGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd 903 (1130)
.+++|+|||++++++ .++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEE
Confidence 345666666666655 368999999999988888775 45678899999 77777777 68899999
Q ss_pred eecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC------------------------cEEEEECCCCcccceeeEec
Q 001184 904 VRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA------------------------QLIFWNTDTWEKRKSIAIQL 959 (1130)
Q Consensus 904 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg------------------------~i~vwd~~~~~~~~~~~~~~ 959 (1130)
+.+++.+..+..+... ..++|+|||+.|+..+.++ .|.+||+.+++.. .....
T Consensus 161 ~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~- 237 (337)
T 1pby_B 161 PEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR- 237 (337)
T ss_dssp TTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE-
T ss_pred CCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC-
Confidence 9999988887755411 1337899998776555432 4689999987654 22211
Q ss_pred cCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 960 ~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
.....+..++|+|||++++++ ++.|.+||+.+++.+..+... ..+.+++|+|||++|++++.++.|++||+.
T Consensus 238 ---~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 238 ---IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP----HSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp ---ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS----SCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred ---CCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC----CceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 122467789999999999988 799999999999988877644 467899999999999999999999999999
Q ss_pred CcccccccCC
Q 001184 1040 SLRLRCRIAP 1049 (1130)
Q Consensus 1040 ~~~~~~~~~~ 1049 (1130)
+++.+..+..
T Consensus 310 ~~~~~~~~~~ 319 (337)
T 1pby_B 310 TLEKKGQVDL 319 (337)
T ss_dssp TCCEEEEEEC
T ss_pred CCcEEEEEEc
Confidence 9998877654
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=1e-18 Score=196.64 Aligned_cols=273 Identities=13% Similarity=0.103 Sum_probs=205.3
Q ss_pred ccceEEEEEeccCCeEEEeee-------CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEE
Q 001184 767 ASKVARLLYTNSGIGILALWS-------NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l 839 (1130)
...+..++++|+|+.+++++. ++.+.+||... ++.....- ....+..+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~----------------------~~~~~~~~---~~~~~~~~ 94 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT----------------------LEVTQAIH---NDLKPFGA 94 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT----------------------CCEEEEEE---ESSCCCSE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC----------------------CeEEEEEe---cCCCcceE
Confidence 356778999999999988774 45677776433 33222111 12346789
Q ss_pred EEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCC---------eEEEEEeCCCCcEEEEEe--CCCcEEEEEeec
Q 001184 840 ALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPA---------STFLAFHPQDNNIIAIGM--EDSTIQIYNVRV 906 (1130)
Q Consensus 840 ~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~---------i~~l~~sp~~~~~lasg~--~dg~v~iwd~~~ 906 (1130)
+++|||++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++.+++++ .++.|.+||..+
T Consensus 95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTT
T ss_pred EECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCC
Confidence 9999999776665 689999999999998888765432 68899999 666666555 478899999999
Q ss_pred CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--c
Q 001184 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--H 984 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~ 984 (1130)
++.+..+..+...+.+++|+|||++|++++.++.|.+||+.+++....... ........+..++|+|+|++++++ .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 174 IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL--LDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC--CCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc--CCCCCCcccceEEECCCCCEEEEEeCC
Confidence 999988886666789999999999999999999999999998765433222 111123467889999999987774 3
Q ss_pred CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcccccccCCCcccccCCCCCcee
Q 001184 985 ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTV 1063 (1130)
Q Consensus 985 d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1130)
++.+.+||..+++.+..+.... + ..++|+|||+++++++ .++.|.+||..+++.+..+... .
T Consensus 252 ~~~v~~~d~~~~~~~~~~~~~~----~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~------------~ 314 (353)
T 3vgz_A 252 AAEVLVVDTRNGNILAKVAAPE----S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP------------T 314 (353)
T ss_dssp SSEEEEEETTTCCEEEEEECSS----C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC------------S
T ss_pred CCEEEEEECCCCcEEEEEEcCC----C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC------------C
Confidence 5899999999999888877542 2 5699999999766666 6899999999999887766421 1
Q ss_pred eeEEEEEcCCCCCEEEEEeCCC
Q 001184 1064 FPLVVTSHPQEPNQLAVGLTDG 1085 (1130)
Q Consensus 1064 ~~~~~~~~~~~~~~l~s~~~Dg 1085 (1130)
.+..++|+|+ +++|+++..++
T Consensus 315 ~~~~~~~s~d-g~~l~v~~~~~ 335 (353)
T 3vgz_A 315 HPNSLALSAD-GKTLYVSVKQK 335 (353)
T ss_dssp EEEEEEECTT-SCEEEEEEECC
T ss_pred CCCeEEEcCC-CCEEEEEEccc
Confidence 3566889985 66565555553
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=1.7e-19 Score=197.10 Aligned_cols=255 Identities=10% Similarity=0.068 Sum_probs=189.2
Q ss_pred CCCCCcccccCCcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCC-Cceeecccceeeeccccccceee
Q 001184 324 VPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQA 402 (1130)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 402 (1130)
.++.+.+|.... ++......|...|.+++|+|||++ |++++ ++.|++||+.+ ++...
T Consensus 20 ~~~~i~~~d~~~--~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~------------------ 77 (297)
T 2ojh_A 20 MRSSIEIFNIRT--RKMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK------------------ 77 (297)
T ss_dssp CCEEEEEEETTT--TEEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE------------------
T ss_pred cceeEEEEeCCC--CceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE------------------
Confidence 445566776654 344455668999999999999995 66665 78999999998 76543
Q ss_pred eeecCC-CccEEEEEEcCCCCEEEEEe--CCCeEEEEEec--CCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001184 403 AIVKDS-SISVSRVAWSPDGNFIGVAF--TKHLIHLYTYQ--GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD 477 (1130)
Q Consensus 403 ~~~~~h-~~~V~~v~~spdg~~las~~--~d~~i~vwd~~--~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d 477 (1130)
+..+| ...|.+++|+|||++|++++ .++.+.||.+. ++. .. .+..+ ..+..++|+||++. ++++++.|
T Consensus 78 -~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~ 150 (297)
T 2ojh_A 78 -VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRD 150 (297)
T ss_dssp -CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEET
T ss_pred -eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCC
Confidence 23344 46789999999999999998 44556666654 433 22 23333 34899999999994 34478889
Q ss_pred CcEEEEe--cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe-cCCcEEEEEcc-CCcceeeecCCCccEEEEEEecCC
Q 001184 478 KLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGKIKAWLYD-NVGSRVDYDAPGLWCTTMLYSADG 553 (1130)
Q Consensus 478 ~~v~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1130)
+.++||+ ..+.....+..|...+.+++|++ ++..|+.++ .++.+++|+++ .......+..+...+..++|+|+|
T Consensus 151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 228 (297)
T 2ojh_A 151 QVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG 228 (297)
T ss_dssp TEEEEEEEETTTCCEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred CceEEEEEECCCCcceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence 9999999 55666777888889999999965 456666655 59999999987 455556666677789999999999
Q ss_pred CeEEEeeecCC-------CCcEEEEeeCCCCceeEEE--ecccCceeEEEEEcCCCCEEEEEeCCC
Q 001184 554 SRLFSCGTSKE-------GDSHLVEWNESEGALKRTY--IGFRKKSAGVVQFDTTRNRILAAGEDN 610 (1130)
Q Consensus 554 ~~l~~~~~~~~-------~~~~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1130)
++|++++.+.. ....|++||+.+++..... .++.. .+..++|+|++++|++++.+.
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 99998875321 2367999999988764433 34433 678899999999998887654
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=3.2e-19 Score=199.16 Aligned_cols=268 Identities=9% Similarity=0.041 Sum_probs=197.3
Q ss_pred EEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCc-cEEEEEEcCCCCEEE-EEeCCCeEEEEEec
Q 001184 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI-SVSRVAWSPDGNFIG-VAFTKHLIHLYTYQ 439 (1130)
Q Consensus 362 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~la-s~~~d~~i~vwd~~ 439 (1130)
++++++.++.|.+||+.+++.+.. +..++.. .+.+++|+|||++++ +++.++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~------------------~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKV------------------ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE------------------EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEE------------------EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 688999999999999999887642 1112222 478899999998765 55567899999999
Q ss_pred CCccceeeeeeec---CCCCeeEEEEecCCCceEEEEEc------------CCCcEEEEe-cCCCeeeEecCCCcCEEEE
Q 001184 440 GSNDLCQSLEIDA---HVGGVNDLAFSYPNKQLCIVTCG------------DDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 440 ~~~~~~~~~~~~~---h~~~V~~i~~s~d~~~l~l~s~s------------~d~~v~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1130)
+++.+... .... |...+.+++|+|||+ .+++++ .++.|.+|| .+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 88755422 1111 223678999999999 556554 579999999 66666666654 4557778
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCc----------------
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDS---------------- 567 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~---------------- 567 (1130)
+|++ ++++|+++ ++.|.+||+.+.+....+..... ...+.|+|+++.++..+.. ++
T Consensus 141 ~~s~--dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~---~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWAR--DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHES---SGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECT--TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTT---TTEEEEEEEEEBTTSCTT
T ss_pred EECC--CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccC---CCceeeeeeccccccccc
Confidence 8854 55667776 68999999998876665554331 1123789999877655421 11
Q ss_pred -------EEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE
Q 001184 568 -------HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1130)
Q Consensus 568 -------~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1130)
.|.+||..+++....-.......+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++|
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 287 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNV 287 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEE
Confidence 579999999887522122222356789999999999888 6999999999998888776543 5789999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 641 NKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 641 s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+|++++|++++.++.|.+||+.++
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTC
T ss_pred CCCCCEEEEEcCCCcEEEEECcCC
Confidence 999999999999999999999877
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=1.5e-19 Score=218.39 Aligned_cols=272 Identities=11% Similarity=0.040 Sum_probs=193.4
Q ss_pred CCCEEEEEEecCCCeEEEEEeC-cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCG-DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
..+|++++|||||++ ||+++. ||+++||++.+++... +...+...|.+++|||| +.++
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~-------------------lt~~~~~~~~~~~~spd-~~l~ 79 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK-------------------LNREPINSVLDPHYGVG-RVIL 79 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE-------------------CCSSCCSEECEECTTCS-EEEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe-------------------eecccccccccccCCCC-eEEE
Confidence 457999999999996 666555 9999999997766543 22333468999999999 7777
Q ss_pred EEeC---CCeEEEEEecC--CccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcC
Q 001184 426 VAFT---KHLIHLYTYQG--SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1130)
Q Consensus 426 s~~~---d~~i~vwd~~~--~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~ 499 (1130)
+++. +....+|.+.. ..... .+..+ ..+...+|+|||+.+++++++.|+. .+|| .+++. ..+..+..
T Consensus 80 ~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~-~~l~~~~~- 152 (582)
T 3o4h_A 80 VRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGL-RELARLPG- 152 (582)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEE-EEEEEESS-
T ss_pred EeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcE-EEeecCCC-
Confidence 7765 45567776654 22122 22222 2345679999998756666665554 4999 55544 44433333
Q ss_pred EEEEeecccCCccEEEEEecC----CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 500 VYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
.+++|+| ||+.|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+.|+++.. ++...|++||+.
T Consensus 153 -~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~ 226 (582)
T 3o4h_A 153 -FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPR 226 (582)
T ss_dssp -CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTT
T ss_pred -ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCC
Confidence 6777754 66899988877 78999999876654 56667778999999999999995432 233499999999
Q ss_pred CCceeEEEecccCceeEEEE--------EcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEE
Q 001184 576 EGALKRTYIGFRKKSAGVVQ--------FDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l 647 (1130)
+++.. .+.++.. .+..++ |+|||..+++++.|+.+++|++ ++.... .. ..+.+++|+ +++++
T Consensus 227 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~--~~v~~~~~s-dg~~l 296 (582)
T 3o4h_A 227 DGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQ--GNHGRVVLW-RGKLV 296 (582)
T ss_dssp TCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CS--SEEEEEEEE-TTEEE
T ss_pred CCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CC--CceEEEEec-CCEEE
Confidence 98877 5555433 444455 9999988899999999999999 655431 11 357899999 99999
Q ss_pred EEEeCCCc---EEEEEcC
Q 001184 648 VVTTADQG---IKILANA 662 (1130)
Q Consensus 648 ~~~~~dg~---i~iw~~~ 662 (1130)
++++.+.. +.+|+..
T Consensus 297 ~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 297 TSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEETTEEEEEEEETTC
T ss_pred EEEcCCCCCCeEEEEcCC
Confidence 88877754 5555543
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.9e-19 Score=223.63 Aligned_cols=276 Identities=12% Similarity=0.074 Sum_probs=188.0
Q ss_pred EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCc---cEEEEEEcCCCCEEEEEe
Q 001184 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI---SVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~spdg~~las~~ 428 (1130)
+++|+|||+ +++++ .|++|++||+.+++... ++.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~-------------------~~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYT-------------------ILSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEE-------------------EECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEE-------------------EEccccccccceeeEEECCCCCeEEEEe
Confidence 679999995 56554 69999999999988654 2333333 488999999999999987
Q ss_pred C---------CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEe-cCCC
Q 001184 429 T---------KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHE 497 (1130)
Q Consensus 429 ~---------d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~-~~h~ 497 (1130)
. ++.|++||+.+++.+... .+ ...+.+++|||||+ .|+.+. |+.|++|| .+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 789999999998752101 12 24689999999999 566664 78999999 555554322 2333
Q ss_pred cCE-----------------EEEeecccCCccEEEEEecCC----------------------------------cEEEE
Q 001184 498 APV-----------------YSVCPHQKENIHFIFSTAVDG----------------------------------KIKAW 526 (1130)
Q Consensus 498 ~~v-----------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i~vw 526 (1130)
..| .+++|+ +||+.|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wS--PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWS--PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEEC--TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 323 367775 5668899887652 78899
Q ss_pred EccCCcce--ee------ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEee----CCCCceeEEE----ecccCce
Q 001184 527 LYDNVGSR--VD------YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN----ESEGALKRTY----IGFRKKS 590 (1130)
Q Consensus 527 d~~~~~~~--~~------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd----~~~~~~~~~~----~~~~~~~ 590 (1130)
|+.++... .. +..+...+..++|+||++.+++.....+....|++|| ..+++....+ .++.. .
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~-~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG-W 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS-C
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc-e
Confidence 99876642 11 2346678999999999877666543233346799999 8877765544 23332 4
Q ss_pred eE-----EEEEcCCCCEEEE--EeCCC--cEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC-----CcE
Q 001184 591 AG-----VVQFDTTRNRILA--AGEDN--QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD-----QGI 656 (1130)
Q Consensus 591 v~-----~~~~~~~~~~l~~--~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d-----g~i 656 (1130)
+. .+.|+|+|+.++. ...+| .|++||+.+++. ..+..+ ...+..+.++ +++.++..+.+ +..
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 44 6889999996554 43445 577778877663 333322 2245666666 77777666554 666
Q ss_pred EEEEcC
Q 001184 657 KILANA 662 (1130)
Q Consensus 657 ~iw~~~ 662 (1130)
++|.+.
T Consensus 385 ~l~~~~ 390 (719)
T 1z68_A 385 NIYRIS 390 (719)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666653
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=2.6e-18 Score=197.11 Aligned_cols=261 Identities=13% Similarity=0.130 Sum_probs=175.9
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCC
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1130)
...+..+++++++..+++++.++ +++|+......... .......+........ + .+...|.+++|+|+|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~--~~~~~v~~l~~spdg~ 105 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK---PGDDPNKIVDKVQGLL----V--PMKFPIHHLALSCDNL 105 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC---TTCCTTCEEECCCCEE----E--CCSSCEEEEEECTTSC
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc---cccCcccccccCcccc----c--cCCCcccEEEEcCCCC
Confidence 44678899999999999988887 88876532110000 0000000000000000 1 3567899999999999
Q ss_pred EEE----EEe-CCeEEEEECCCc--------ee---EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEE
Q 001184 847 YVM----SAG-GGKVSLFNMMNF--------KV---MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK 910 (1130)
Q Consensus 847 ~la----~~~-dg~i~iwd~~~~--------~~---~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 910 (1130)
+|+ +++ |+.|+|||+.++ +. +..+.+|...|.+++|+|+++.+|++++.||+|++||+.++..+
T Consensus 106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~ 185 (434)
T 2oit_A 106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV 185 (434)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence 999 555 799999998765 22 45556789999999999955899999999999999999999877
Q ss_pred EEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEecc-CCCCCCCeEEEEEcCCCcEEEEE--cCC-
Q 001184 911 TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP-AGKLPVGETRVQFHSDQVRLLVN--HET- 986 (1130)
Q Consensus 911 ~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~--~d~- 986 (1130)
....+|...|++++|+|+|++|++++.||+|++||+. ++.......... ...+...+.++.|++++.++++. .++
T Consensus 186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 7778899999999999999999999999999999998 332222111111 11123478999999999998762 332
Q ss_pred -----cEEEEECCCce-----eeeeeecC----CCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeC
Q 001184 987 -----QLAIYDGSKME-----CIRQWVPQ----DVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDA 1038 (1130)
Q Consensus 987 -----~i~v~d~~~~~-----~~~~~~~~----~~~~~~v~~v~~s~dg~~l~t~~~-Dg~i~vwd~ 1038 (1130)
.+++|++...+ ....+... .....+-..+.+-+|.+++++++. .+.|.|...
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 38999997542 11221111 011233344455578887777764 344555543
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=7.2e-18 Score=189.02 Aligned_cols=275 Identities=14% Similarity=0.153 Sum_probs=182.2
Q ss_pred CCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee---CCeEEeeecCCCCCCCCcccccccccc
Q 001184 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS---NGVQKLWKWNRTEQNPSGKATAAVAPQ 814 (1130)
Q Consensus 738 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~ 814 (1130)
++.+.+|.++.... ....+.... +......++|+|+|+ +++++. ++.+.+|++..+...
T Consensus 15 ~~~i~v~~~d~~tg--~~~~~~~~~---~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------ 76 (347)
T 3hfq_A 15 SQGIYQGTLDTTAK--TLTNDGLLA---ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------ 76 (347)
T ss_dssp CCEEEEEEEETTTT--EEEEEEEEE---ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred CCCEEEEEEcCCCC--eEEEeeeee---ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence 46688888875322 222211111 345667899999999 666665 588999986432110
Q ss_pred cccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECC-Cc--eeEEEEeCC---------CCCeEEE
Q 001184 815 HWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMM-NF--KVMTTFMSP---------PPASTFL 880 (1130)
Q Consensus 815 ~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~-~~--~~~~~~~~~---------~~~i~~l 880 (1130)
.+.. + ..+...+..++|+|||++|++++ ++.|.+|++. ++ +.+..+... ...+.++
T Consensus 77 --------~~~~-~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~ 146 (347)
T 3hfq_A 77 --------KLNT-V-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYT 146 (347)
T ss_dssp --------EEEE-E-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred --------Eeee-e-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEE
Confidence 0000 0 02455678899999999888876 6899999996 22 333333321 1248899
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEee-cCeEE--EEEecCC-CCeeEEEEccCCCeEEEE-eCCCcEEEEECCC--Ccccc
Q 001184 881 AFHPQDNNIIAIGMEDSTIQIYNVR-VDEVK--TKLKGHQ-KHITGLAFSTNLNILVSS-GSDAQLIFWNTDT--WEKRK 953 (1130)
Q Consensus 881 ~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~--~~l~~h~-~~V~~l~~s~dg~~L~s~-s~Dg~i~vwd~~~--~~~~~ 953 (1130)
+|+| +++++++...++.|++|++. +++.. ..+..+. ..+..++|+|||++|+++ ..++.|.+|+++. ++...
T Consensus 147 ~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 147 DLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 9999 67777777778999999998 55433 2233332 367889999999976664 5688999999885 33211
Q ss_pred eeeEeccCCC--CCCCeEEEEEcCCCcEEEE--EcCCcEEEEECCC---ceeeeeeecCCCCCCCeEEEEECCCCCEEEE
Q 001184 954 SIAIQLPAGK--LPVGETRVQFHSDQVRLLV--NHETQLAIYDGSK---MECIRQWVPQDVLSSPISSAAYSCNSQLIYA 1026 (1130)
Q Consensus 954 ~~~~~~~~~~--~~~~v~~~~~s~d~~~l~~--~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t 1026 (1130)
.......... ....+..++|+|||++|++ ..++.|.+|++.. .+.+..+..+ ...+.+++|+|||++|++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~---~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE---GDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS---SSCCCEEEECTTSSEEEE
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC---CCCcCeEEECCCCCEEEE
Confidence 1111111111 1135788999999998865 3478999999973 2444444443 456789999999999988
Q ss_pred EeCC-CcEEEE--eCCCcccc
Q 001184 1027 TFTD-GSIGVF--DADSLRLR 1044 (1130)
Q Consensus 1027 ~~~D-g~i~vw--d~~~~~~~ 1044 (1130)
++.+ +.|.+| |..+|++.
T Consensus 303 ~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 303 VNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EETTTTEEEEEEECTTTCCEE
T ss_pred EEcCCCcEEEEEEeCCCCeEE
Confidence 8864 899999 55667654
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=1e-17 Score=191.22 Aligned_cols=293 Identities=11% Similarity=-0.014 Sum_probs=193.2
Q ss_pred cCCCCEEE-----EEEecCCCeEEEEEeCcC--eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 345 HQGSSVVS-----MDFHPFHHTLLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 345 ~h~~~V~~-----v~fspdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
.|...+.. .+|||||+++++++..+| .|.+||+.+++... +..++...+..++|
T Consensus 28 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~~~~~ 88 (388)
T 3pe7_A 28 PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTFGGFL 88 (388)
T ss_dssp CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSSSCEE
T ss_pred CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCccceEE
Confidence 46656666 899999997544444467 48888998887654 34456556667889
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEE--EecCCCceEEEE----------------------
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA--FSYPNKQLCIVT---------------------- 473 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~--~s~d~~~l~l~s---------------------- 473 (1130)
||||++|++++.++.|++||+.+++... ....+...+.... +++|++ .++.
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T 3pe7_A 89 SPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFHEFYF 163 (388)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhhhhhc
Confidence 9999999999999999999999987443 2344555554444 489998 4543
Q ss_pred EcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecC------CcEEEEEccCCcceeeecCCC-ccEEE
Q 001184 474 CGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGSRVDYDAPG-LWCTT 546 (1130)
Q Consensus 474 ~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~-~~v~~ 546 (1130)
.+.+..|.+||..+.....+..+...+..++|+|. ++..|+..+.+ ..|.++|.+............ ..+..
T Consensus 164 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 164 TKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTH 242 (388)
T ss_dssp GCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEE
T ss_pred cCCcceEEEEECCCCceEEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccccc
Confidence 23457899999443345566667778889988651 55777766653 367777776554433322222 35788
Q ss_pred EEEecCCCeEEEeeecCC-CCcEEEEeeCCCCceeEE--EecccC--ceeEEEEEcCCCCEEEEE---------eCCCcE
Q 001184 547 MLYSADGSRLFSCGTSKE-GDSHLVEWNESEGALKRT--YIGFRK--KSAGVVQFDTTRNRILAA---------GEDNQI 612 (1130)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~~--~~~~~~--~~v~~~~~~~~~~~l~~~---------~~dg~i 612 (1130)
++|+|||+.|+..+.... ....|++||+.+++.... +.++.. .......|+|+|+.|+.. ..+..|
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence 999999998877654221 123599999998875432 222100 001123689999987754 456789
Q ss_pred EEEeCCCCceeEEEeccCCCC--------CcceEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 001184 613 KFWDMDNVNMLTSTEAEGGLP--------SLPRLRFNKEGNLLVVTT-ADQGIKILANA 662 (1130)
Q Consensus 613 ~vwd~~~~~~~~~~~~~~~~~--------~i~~v~~s~~~~~l~~~~-~dg~i~iw~~~ 662 (1130)
++||+.+++............ .+..++|+|||+.|+..+ .+|...||.+.
T Consensus 323 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 323 YVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 999999887644333222110 367889999999888766 46777777654
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=3.9e-18 Score=195.70 Aligned_cols=220 Identities=12% Similarity=0.068 Sum_probs=158.3
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE-
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG- 425 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la- 425 (1130)
...++.++++|++. ++++|+.++ |+||+........... .+... ...........|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCccc-ccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34689999999998 588888887 9998864321100000 00000 00000011224677899999999999999
Q ss_pred ---EEeCCCeEEEEEecCC--------ccceeeeeeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-cCCCeeeE
Q 001184 426 ---VAFTKHLIHLYTYQGS--------NDLCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1130)
Q Consensus 426 ---s~~~d~~i~vwd~~~~--------~~~~~~~~~~~h~~~V~~i~~s~d-~~~l~l~s~s~d~~v~iwd-~~~~~~~~ 492 (1130)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++|| .++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999765 222234456789999999999998 55 899999999999999 66766667
Q ss_pred ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC-------CccEEEEEEecCCCeEEEeeecC--
Q 001184 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-------GLWCTTMLYSADGSRLFSCGTSK-- 563 (1130)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~-- 563 (1130)
..+|...|.+++|++ ++.+|++|+.||+|++||.+ ......+..+ ...+.++.|++++.++++.+...
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 778999999999976 46899999999999999998 3433333322 23799999999988887655321
Q ss_pred -CCCcEEEEeeCCCC
Q 001184 564 -EGDSHLVEWNESEG 577 (1130)
Q Consensus 564 -~~~~~i~~wd~~~~ 577 (1130)
.....+++|++...
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 11235899998754
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=2.3e-17 Score=184.94 Aligned_cols=245 Identities=11% Similarity=0.106 Sum_probs=169.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeC---CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEE
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFT---KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRV 482 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-~d~~v~i 482 (1130)
.+...+..++|+|||+ |++++. ++.|.+||+.+++ ......+..+...+..++|+|||+ +|++++ .++.|.+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-AHKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEV 112 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE-EEEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc-EEEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEE
Confidence 3445678899999999 555544 6899999998765 233334456778899999999999 566655 7899999
Q ss_pred Ee-c-CCCe--eeEecC---------CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee---eecC-CCccEE
Q 001184 483 WD-L-SGRK--LFQFEG---------HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDA-PGLWCT 545 (1130)
Q Consensus 483 wd-~-~~~~--~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~-~~~~v~ 545 (1130)
|+ . ++.. +..+.. +...+.+++|+| +++++++...++.|.+|++....... .+.. ....+.
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 99 3 2332 233321 123478888865 44577777778999999998333222 1122 333678
Q ss_pred EEEEecCCCeEEEeeecCCCCcEEEEeeCCC--Cce--eEEEecccC-----ceeEEEEEcCCCCEEEE-EeCCCcEEEE
Q 001184 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESE--GAL--KRTYIGFRK-----KSAGVVQFDTTRNRILA-AGEDNQIKFW 615 (1130)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~--~~~~~~~~~-----~~v~~~~~~~~~~~l~~-~~~dg~i~vw 615 (1130)
.++|+|||++++++.. .++.|.+|++.. ++. +..+..... ..+..++|+|+|++|++ ...++.|.+|
T Consensus 191 ~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~ 267 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVF 267 (347)
T ss_dssp EEEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEE
T ss_pred eEEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEE
Confidence 8999999998877653 367899998764 543 223332221 24778999999998754 5568999999
Q ss_pred eCCC-C--ceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC-CcEEEEEcC
Q 001184 616 DMDN-V--NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD-QGIKILANA 662 (1130)
Q Consensus 616 d~~~-~--~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d-g~i~iw~~~ 662 (1130)
++.. + +.+..+..++. .+..++|+|+|++|++++.+ +.+.+|+++
T Consensus 268 ~~~~~g~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 268 AVTADGHLTLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EECGGGCEEEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCcEEEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 9973 2 34444443332 57899999999998888765 899999654
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=7.9e-17 Score=181.61 Aligned_cols=178 Identities=11% Similarity=0.110 Sum_probs=121.8
Q ss_pred CCceeEEEEecCCCEEEEEe--CCeEEEEECCCce-------e------EEEEeCCCCCeEEEEEeCCCCcEEEEEe-CC
Q 001184 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFK-------V------MTTFMSPPPASTFLAFHPQDNNIIAIGM-ED 896 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~-------~------~~~~~~~~~~i~~l~~sp~~~~~lasg~-~d 896 (1130)
...+.+++|+|||+++++++ ++.|++|++.... . ......+...+..++|+| +++++++++ .+
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~ 232 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIG 232 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTT
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCC
Confidence 44577899999999776665 6889999876433 1 111223455688999999 788776666 68
Q ss_pred CcEEEEEeecCeE--EEEEe---cCCCCeeEEEEccCCCeEEEEeCC--CcEEEEECC--CCcccceeeEeccCCCCCCC
Q 001184 897 STIQIYNVRVDEV--KTKLK---GHQKHITGLAFSTNLNILVSSGSD--AQLIFWNTD--TWEKRKSIAIQLPAGKLPVG 967 (1130)
Q Consensus 897 g~v~iwd~~~~~~--~~~l~---~h~~~V~~l~~s~dg~~L~s~s~D--g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~ 967 (1130)
+.|.+|++.+++. +..+. .+.....+++|+|||++|++++.+ +.|.+|+++ +++.... ..... ...
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~--~~~~~---g~~ 307 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKV--GYQLT---GIH 307 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEE--EEEEC---SSC
T ss_pred CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe--eEecC---CCC
Confidence 9999999998754 33332 334457899999999999776654 899999996 3332111 11221 246
Q ss_pred eEEEEEcCCCcEEEEE--cCCcEEEE--ECCCceeeeeeecCCCCCCCeEEEEEC
Q 001184 968 ETRVQFHSDQVRLLVN--HETQLAIY--DGSKMECIRQWVPQDVLSSPISSAAYS 1018 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~~--~d~~i~v~--d~~~~~~~~~~~~~~~~~~~v~~v~~s 1018 (1130)
+..++|+|||++|+++ .++.+.+| |..+++....... .+...+.|+.|.
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~--~~~~~p~~v~~~ 360 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKD--IKVDKPVCLKFV 360 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCC--EECSSEEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeeccee--eeCCCCeEEEEc
Confidence 7789999999988875 47889996 4556765543211 123568888886
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=3.2e-18 Score=206.65 Aligned_cols=235 Identities=14% Similarity=0.176 Sum_probs=176.0
Q ss_pred CccEEEEEEcCCCCEEEEEeC-CCeEEEEEecCCccceeeeeeecCC-CCeeEEEEecCCCceEEEEEcC---CCcEEEE
Q 001184 409 SISVSRVAWSPDGNFIGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGD---DKLIRVW 483 (1130)
Q Consensus 409 ~~~V~~v~~spdg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~l~l~s~s~---d~~v~iw 483 (1130)
..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|. ..+.+++|+|| + ++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 457999999999999999887 999999999776533 244555 68999999999 5 6776654 5556676
Q ss_pred e--c--CCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEe
Q 001184 484 D--L--SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 484 d--~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1130)
. . .+... .+..+. .+...+|++++++..+++++.++ +.+||+++++.......+. .+++|+|||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5 4 55544 443322 34456777777655565555554 4599998876554443332 789999999999988
Q ss_pred eecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceeEEEeccCCCCCcce
Q 001184 560 GTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN--QIKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1130)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~i~~ 637 (1130)
+.+..+...|++||+.+++.. .+..+.. .+..++|+|||++|+++..++ .|++||+.+++.. .+..+ ...+..
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~ 242 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSS 242 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhh
Confidence 763333378999999888765 5555444 678999999999999888888 8999999998877 44433 225666
Q ss_pred EE--------EcCCCCEEEEEeCCCcEEEEEc
Q 001184 638 LR--------FNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 638 v~--------~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
++ |+|||.++++++.++.+++|++
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 67 9999999999999999999997
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=1.7e-17 Score=205.71 Aligned_cols=275 Identities=13% Similarity=0.102 Sum_probs=183.1
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCc-----cEEEEEEcCCCC
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI-----SVSRVAWSPDGN 422 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~spdg~ 422 (1130)
....+++|+|||+ +++++ ||+|++||+.+++... ++.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCC
Confidence 3466899999997 57776 9999999999988653 2344432 234589999999
Q ss_pred EEEEEeCC---------CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeee-
Q 001184 423 FIGVAFTK---------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF- 491 (1130)
Q Consensus 423 ~las~~~d---------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~- 491 (1130)
+|++++.+ +.+.+||+.+++.. .+..|.+.+..++|||||+ .|+.+ .|+.|++|| .++....
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~-~~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEE-ECCeEEEEECCCCceEEE
Confidence 99999876 56679999998744 3667788899999999999 56666 478999999 5554332
Q ss_pred EecCCCcCE-----------------EEEeecccCCccEEEEEecCCc-EEEEEccCCcceeeecCCCccEEEEEEecCC
Q 001184 492 QFEGHEAPV-----------------YSVCPHQKENIHFIFSTAVDGK-IKAWLYDNVGSRVDYDAPGLWCTTMLYSADG 553 (1130)
Q Consensus 492 ~~~~h~~~v-----------------~~~~~~~~~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1130)
+..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 222333333 23666 456788888876554 8888764322110 123356677777776
Q ss_pred CeEEEeeecCCCCcEEEEeeCCC---Cc--eeEEEec-----ccCceeEEEEEcCCCCEEEEEeC----CCcEEEEeCCC
Q 001184 554 SRLFSCGTSKEGDSHLVEWNESE---GA--LKRTYIG-----FRKKSAGVVQFDTTRNRILAAGE----DNQIKFWDMDN 619 (1130)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~ 619 (1130)
.. +....|++||+.+ ++ ....+.. .+...+..++|+|||+.++.... +..|++||+.+
T Consensus 223 ~~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 223 AV--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp SC--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred Cc--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 43 2245799999998 73 2233332 13446888999999986666432 34799999998
Q ss_pred Cc----ee--EEEeccCCCCCc-----ceEEEcCCCCEEE-EEeC-CC--cEEEEEcCCC
Q 001184 620 VN----ML--TSTEAEGGLPSL-----PRLRFNKEGNLLV-VTTA-DQ--GIKILANADG 664 (1130)
Q Consensus 620 ~~----~~--~~~~~~~~~~~i-----~~v~~s~~~~~l~-~~~~-dg--~i~iw~~~~~ 664 (1130)
++ +. ..+....+...+ ..++|+|||+.++ ..+. +| .|.+|+..++
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 87 21 111111122233 3789999999877 6653 34 5666776544
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=8.9e-18 Score=208.22 Aligned_cols=379 Identities=9% Similarity=0.019 Sum_probs=239.4
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCce--e--EEEEEcCCCCEEEEEeCC---------C
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS--A--GVVQFDTTRNRILAAGED---------N 610 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--v--~~~~~~~~~~~l~~~~~d---------g 610 (1130)
..++.|+|||+++++. ++.|++||+.+++....+.++.... + ..+.|||||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999888874 6799999999999888887765322 2 337899999999998876 5
Q ss_pred cEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccccccccc
Q 001184 611 QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGS 690 (1130)
Q Consensus 611 ~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1130)
.+++||+.+++... +. .+...+..++|||||+.||.+. ++.|++|++.++.....+..+....+.
T Consensus 93 ~~~~~d~~~~~~~~-l~--~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~----------- 157 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EE--RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIY----------- 157 (740)
T ss_dssp EEEEEETTTTEECC-SS--CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEE-----------
T ss_pred EEEEEECCCCcEEE-cc--cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcccee-----------
Confidence 67799999987653 22 2233689999999999999885 689999998776311100100000000
Q ss_pred ceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccce
Q 001184 691 AVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKV 770 (1130)
Q Consensus 691 ~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i 770 (1130)
.+ +.-|-... ......
T Consensus 158 -------------------------------------------~g-----~~~~v~~e----------------e~~~~~ 173 (740)
T 4a5s_A 158 -------------------------------------------NG-----ITDWVYEE----------------EVFSAY 173 (740)
T ss_dssp -------------------------------------------ES-----BCCHHHHH----------------HTSSSS
T ss_pred -------------------------------------------cC-----cccccccc----------------hhcCCC
Confidence 00 00000000 001233
Q ss_pred EEEEEeccCCeEEEeeeC-CeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEE
Q 001184 771 ARLLYTNSGIGILALWSN-GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1130)
Q Consensus 771 ~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1130)
..+.|||||+.|+....| +.+.+|++...... ..+...+..+.+.+.|...
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~---------------------------~~~~~~~~~~~yp~~G~~~- 225 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE---------------------------SLQYPKTVRVPYPKAGAVN- 225 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCST---------------------------TCSSCEEEEEECCBTTSCC-
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCC---------------------------CCCCCcceeecCCCCcCcC-
Confidence 468999999999988765 44777764321100 0134456667777776431
Q ss_pred EEeCCeEEEEECCC---ce--eEEEEe------CCCCCeEEEEEeCCCCcEEEEEeC----CCcEEEEEeecCe----EE
Q 001184 850 SAGGGKVSLFNMMN---FK--VMTTFM------SPPPASTFLAFHPQDNNIIAIGME----DSTIQIYNVRVDE----VK 910 (1130)
Q Consensus 850 ~~~dg~i~iwd~~~---~~--~~~~~~------~~~~~i~~l~~sp~~~~~lasg~~----dg~v~iwd~~~~~----~~ 910 (1130)
...+|++||+.+ ++ ....+. ++...+..++|+| |+++++.... +..|++||+.+++ +.
T Consensus 226 --~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 226 --PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp --CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred --CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 123699999998 73 233343 2667799999999 7876665543 3379999999887 22
Q ss_pred --EEE--ecCCCCee-----EEEEccCCCeEE-EEeC-C--CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCC
Q 001184 911 --TKL--KGHQKHIT-----GLAFSTNLNILV-SSGS-D--AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 911 --~~l--~~h~~~V~-----~l~~s~dg~~L~-s~s~-D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 977 (1130)
..+ .+|...|. .++|+|||+.|+ ..+. + ..|++||+.+++.. ++..+. ..+..+. .+|+
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~--~~v~~~~-~~d~ 374 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGT--WEVIGIE-ALTS 374 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSS--SCEEEEE-EECS
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCC--EEEEEEE-EEeC
Confidence 122 45665554 789999999887 6654 3 45888998875432 222222 3444443 2446
Q ss_pred cEEEE-EcC-------CcEEEEECCCceeeeeeecC-CCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEeCCCccccc
Q 001184 978 VRLLV-NHE-------TQLAIYDGSKMECIRQWVPQ-DVLSSPISSAAYSCNSQLIYATFTD---GSIGVFDADSLRLRC 1045 (1130)
Q Consensus 978 ~~l~~-~~d-------~~i~v~d~~~~~~~~~~~~~-~~~~~~v~~v~~s~dg~~l~t~~~D---g~i~vwd~~~~~~~~ 1045 (1130)
+.++. +.. ..|+..++..+.....+... ......+..+.|||||++++..... ..+.+++..+++...
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~ 454 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR 454 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence 66665 332 24555566554433233221 1113578899999999987766643 468888988776544
Q ss_pred c
Q 001184 1046 R 1046 (1130)
Q Consensus 1046 ~ 1046 (1130)
.
T Consensus 455 ~ 455 (740)
T 4a5s_A 455 V 455 (740)
T ss_dssp E
T ss_pred E
Confidence 3
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=6e-19 Score=219.12 Aligned_cols=285 Identities=9% Similarity=0.063 Sum_probs=194.1
Q ss_pred CEEEEEEecCCCeEEEEEeC---------cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 349 SVVSMDFHPFHHTLLVVGCG---------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
.|.+++|||||++ |++++. ++.|++||+.+++.+.... + ...+.+++|||
T Consensus 61 ~~~~~~~SpDg~~-la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-----------------l---~~~~~~~~~SP 119 (719)
T 1z68_A 61 NASNYGLSPDRQF-VYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-----------------L---PRPIQYLCWSP 119 (719)
T ss_dssp TCSEEEECTTSSE-EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-----------------C---CSSBCCEEECS
T ss_pred ceeeEEECCCCCe-EEEEecCceeEEeecceEEEEEECCCCcccccee-----------------c---CcccccceECC
Confidence 4999999999996 666654 6899999999988632100 1 24588899999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCe-----------------eEEEEecCCCceEEEEEcCCC----
Q 001184 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGV-----------------NDLAFSYPNKQLCIVTCGDDK---- 478 (1130)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V-----------------~~i~~s~d~~~l~l~s~s~d~---- 478 (1130)
||++||++. ++.|++||+.+++.... ...++...| .+++|||||+ .|++++.|.
T Consensus 120 DG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~--~la~~~~d~~~~~ 194 (719)
T 1z68_A 120 VGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK--FLAYAEFNDTDIP 194 (719)
T ss_dssp STTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS--EEEEEEEECTTSC
T ss_pred CCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCeEcccccceeeeecccCcccEEECCCCC--EEEEEEECCCCCc
Confidence 999999986 78999999998875431 123333322 5899999999 677766542
Q ss_pred ------------------------------cEEEEe-cCCCee--------eEecCCCcCEEEEeecccCCccEEEEEec
Q 001184 479 ------------------------------LIRVWD-LSGRKL--------FQFEGHEAPVYSVCPHQKENIHFIFSTAV 519 (1130)
Q Consensus 479 ------------------------------~v~iwd-~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 519 (1130)
.|++|| .+++.. ..+.+|...+.+++|+|+ +.++++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD--~~~~~~~~~ 272 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD--ERVCLQWLK 272 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS--SEEEEEEEE
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC--CeEEEEEec
Confidence 788999 444432 224468889999999765 567776543
Q ss_pred CC----cEEEEE----ccCCcceeee----cCCCccEE-----EEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 520 DG----KIKAWL----YDNVGSRVDY----DAPGLWCT-----TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 520 dg----~i~vwd----~~~~~~~~~~----~~~~~~v~-----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
.+ .|.+|| ..+++....+ ..+...+. .+.|+|||+.++......++...|++||..+++ ...
T Consensus 273 ~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~ 351 (719)
T 1z68_A 273 RVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQ 351 (719)
T ss_dssp SSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEE
T ss_pred cccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEe
Confidence 32 488888 6665544443 34555555 789999999887754445567789999988776 344
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC--Cce-eEEEec--cCCCCCcceEEEcCCCCEEEEEe-
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGED-----NQIKFWDMDN--VNM-LTSTEA--EGGLPSLPRLRFNKEGNLLVVTT- 651 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~--~~~-~~~~~~--~~~~~~i~~v~~s~~~~~l~~~~- 651 (1130)
+..+.. .+..+.+. +++.++..+.+ +..++|.+.. +.. ...+.. .++...+..+.|+|+++.++..+
T Consensus 352 lt~~~~-~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s 429 (719)
T 1z68_A 352 ITSGKW-EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCY 429 (719)
T ss_dssp CSCSSS-CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEEC
T ss_pred cccCce-EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcC
Confidence 444332 45666666 78877776654 7788887654 321 233321 11223567899999988777543
Q ss_pred CC--CcEEEEEcCCC
Q 001184 652 AD--QGIKILANADG 664 (1130)
Q Consensus 652 ~d--g~i~iw~~~~~ 664 (1130)
.. ..+.+|++.++
T Consensus 430 ~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 430 GPGIPISTLHDGRTD 444 (719)
T ss_dssp CBSSCEEEEECSSSC
T ss_pred CCCCCeEEEEECCCC
Confidence 32 46788988766
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=4.8e-18 Score=190.65 Aligned_cols=245 Identities=14% Similarity=0.134 Sum_probs=183.4
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCC-CCeEEEEEeCCCCc-EEEEEeCCCcEEEEEeecCeEEEEEe
Q 001184 838 CVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP-PASTFLAFHPQDNN-IIAIGMEDSTIQIYNVRVDEVKTKLK 914 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~-~lasg~~dg~v~iwd~~~~~~~~~l~ 914 (1130)
.++++++++++++++ +++|++||..+++.+..+..+. ..+..++|+| +++ +++++..++.|++||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788888888887 8999999999999988887543 2578999999 666 45566678999999999999887776
Q ss_pred cCC------CCeeEEEEccCCCeEEEEeCC------------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCC
Q 001184 915 GHQ------KHITGLAFSTNLNILVSSGSD------------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1130)
Q Consensus 915 ~h~------~~V~~l~~s~dg~~L~s~s~D------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 976 (1130)
.+. ..+.+++|+|||++|++++.+ +.|.+||+.+++........ . .+..+.+++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~---~~~~~~~~~~s~d 158 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-P---MPRQVYLMRAADD 158 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-E---CCSSCCCEEECTT
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-c---CCCcccceeECCC
Confidence 432 237899999999999998866 89999999886543222111 1 1235778999999
Q ss_pred CcEEEEEcCCcEEEEECCCceeeeeeecCCC-------------------------------------------------
Q 001184 977 QVRLLVNHETQLAIYDGSKMECIRQWVPQDV------------------------------------------------- 1007 (1130)
Q Consensus 977 ~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~------------------------------------------------- 1007 (1130)
|+ +++. ++.+.+||+.+++.+..+.....
T Consensus 159 g~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 159 GS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp SC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred Cc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 99 5543 34499999999887766543310
Q ss_pred ----------------CCCCeEEEEECC-CCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEE
Q 001184 1008 ----------------LSSPISSAAYSC-NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTS 1070 (1130)
Q Consensus 1008 ----------------~~~~v~~v~~s~-dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1130)
+...+.+++|+| ||++++++ ++.|++||+.+++....+... + .+..++|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~----------~--~~~~~~~ 302 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD----------H--TYYCVAF 302 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS----------S--CCCEEEE
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC----------C--CccceEE
Confidence 011456778889 99999988 889999999999877666421 1 1235889
Q ss_pred cCCCCCEEEEEeCCCcEEEEeCCCCccCCccccc
Q 001184 1071 HPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVP 1104 (1130)
Q Consensus 1071 ~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w~~~~p 1104 (1130)
+|+ +.+|++++.++.|.+||+.+++....+..|
T Consensus 303 s~d-g~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 303 DKK-GDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp CSS-SSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCC-CCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 985 666777888999999999988876655544
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=1.7e-17 Score=186.28 Aligned_cols=274 Identities=11% Similarity=0.041 Sum_probs=185.4
Q ss_pred EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCC-CccEEEEEEcCCCCEEE-EEeC
Q 001184 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDS-SISVSRVAWSPDGNFIG-VAFT 429 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~spdg~~la-s~~~ 429 (1130)
.++++++++ ++++++.++.|.+||+.+++.+.. +..+ ...+..++|+|||++++ ++..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 456788776 789999999999999999887642 2222 22577899999999665 4556
Q ss_pred CCeEEEEEecCCccceeeeeee-cC-----CCCeeEEEEecCCCceEEEEEcCC------------CcEEEEe-cCCC--
Q 001184 430 KHLIHLYTYQGSNDLCQSLEID-AH-----VGGVNDLAFSYPNKQLCIVTCGDD------------KLIRVWD-LSGR-- 488 (1130)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~-~h-----~~~V~~i~~s~d~~~l~l~s~s~d------------~~v~iwd-~~~~-- 488 (1130)
++.|.+||+.+++.... +. .+ ...+.+++|+|||+ ++++++.+ +.|.+|| .+++
T Consensus 64 ~~~i~~~d~~t~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFH---ANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEEE---EESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEEE---EEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 89999999998875432 22 22 23478999999999 56766654 8999999 5533
Q ss_pred -eeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC---------------------c---c
Q 001184 489 -KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------------------L---W 543 (1130)
Q Consensus 489 -~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------------------~---~ 543 (1130)
.+..+. +...+.+++|++ +++ ++.++ +.|.+||..+++....+.... . .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 333444 334678888865 446 55544 449999998877665554332 0 2
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCce
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~ 622 (1130)
...+++++++........ ....+..+|..+++....-.......+..++++| ++++++++ ++.|++||+.+++.
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~ 287 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL 287 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE
Confidence 345666665532211110 0112333565555432211111333677899999 99999888 88999999999998
Q ss_pred eEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 623 LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 623 ~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+..+.... .+.+++|+|++++|++++.++.|.+||..++
T Consensus 288 ~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 288 IKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 88776543 4689999999998988888999999999876
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.78 E-value=3.7e-16 Score=176.06 Aligned_cols=271 Identities=14% Similarity=0.153 Sum_probs=182.7
Q ss_pred EEEEEe----CcCeEEEEeCC--CCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCC----C
Q 001184 362 LLVVGC----GDGEITLWDVG--LRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK----H 431 (1130)
Q Consensus 362 llasg~----~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d----~ 431 (1130)
.+++|+ .++.|.+|+++ +++.... ... +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~-----------------~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL-----------------SDA--EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE-----------------EEE--ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe-----------------ecc--cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 456664 35689998764 4544321 012 56678889999999999999876 7
Q ss_pred eEEEEEecCC-ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEe------cC--------
Q 001184 432 LIHLYTYQGS-NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF------EG-------- 495 (1130)
Q Consensus 432 ~i~vwd~~~~-~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~------~~-------- 495 (1130)
.|.+|++... ..+........+......+++ +++. ++++...++.|.+|+ .....+..+ .+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999999763 223333344445667778888 7774 445555789999999 333332211 11
Q ss_pred CCcCEEEEeecccCCccEEEEE-ecCCcEEEEEccCCcc------e-------eeecCCCccEEEEEEecCCCeEEEeee
Q 001184 496 HEAPVYSVCPHQKENIHFIFST-AVDGKIKAWLYDNVGS------R-------VDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~~------~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
+...+.+++|+| ++++++++ ..++.|.+|+++.... . .........+..++|+|||++++++..
T Consensus 153 ~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 123357788865 55655554 4588999999886542 1 122334456789999999998887762
Q ss_pred cCCCCcEEEEeeCCCCcee--EEEeccc--CceeEEEEEcCCCCEEEEEeCC--CcEEEEeCC--CCc--eeEEEeccCC
Q 001184 562 SKEGDSHLVEWNESEGALK--RTYIGFR--KKSAGVVQFDTTRNRILAAGED--NQIKFWDMD--NVN--MLTSTEAEGG 631 (1130)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~--~~~--~~~~~~~~~~ 631 (1130)
.++.|.+|++.+++.. ..+.... ......++|+|+|++|+++..+ +.|.+|++. +++ .+..+.. +
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 3788999999877542 2232211 1235689999999998776654 899999986 455 3333433 2
Q ss_pred CCCcceEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 001184 632 LPSLPRLRFNKEGNLLVVTT-ADQGIKILANA 662 (1130)
Q Consensus 632 ~~~i~~v~~s~~~~~l~~~~-~dg~i~iw~~~ 662 (1130)
..+..++|+|+|++|++++ .++.|.+|+++
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2578999999999988887 67899997664
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=8.2e-17 Score=181.40 Aligned_cols=248 Identities=9% Similarity=0.055 Sum_probs=169.2
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEECC-CceeEEEEeC-CCCCeEEEEEeCCCCc--EEEEEe-------------CC
Q 001184 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMM-NFKVMTTFMS-PPPASTFLAFHPQDNN--IIAIGM-------------ED 896 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~sp~~~~--~lasg~-------------~d 896 (1130)
..+..++++|||++|++++.+.|.+|++. +++....... ..+...+++|+| +++ ++++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46788999999999988884599999997 7776544331 112356689999 777 455553 68
Q ss_pred CcEEEEEee-cCeEEEEEe----cCCCCeeEEEEccCCCeEEEEeC-CCcEEEEECC-CCcccceeeEeccCCCCCCCeE
Q 001184 897 STIQIYNVR-VDEVKTKLK----GHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTD-TWEKRKSIAIQLPAGKLPVGET 969 (1130)
Q Consensus 897 g~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~v~ 969 (1130)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|+++ +++.........+. +...+.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--~g~~p~ 196 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD--PGDHPR 196 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS--TTCCEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC--CCCCCC
Confidence 999999997 466554443 25567999999999999887764 6799999998 55532211122111 125688
Q ss_pred EEEEcCCCcEEEEE--cCCcEEEEECC--Cceee---eeeecCC----CCCC------CeEEEE-ECCCCCEEEEEeCC-
Q 001184 970 RVQFHSDQVRLLVN--HETQLAIYDGS--KMECI---RQWVPQD----VLSS------PISSAA-YSCNSQLIYATFTD- 1030 (1130)
Q Consensus 970 ~~~~s~d~~~l~~~--~d~~i~v~d~~--~~~~~---~~~~~~~----~~~~------~v~~v~-~s~dg~~l~t~~~D- 1030 (1130)
.++|+|||+++++. .++.+.+|++. +++.. ..+.... ++.. .+..++ |+|||++|++++.+
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 99999999998874 36789999765 56542 1222111 1122 488999 99999998877643
Q ss_pred C-----cEEEEeCC-Ccccccc---cCCCcccccCCCCCceeeeEEEEEcCC--CCCEEEEEeC-CCcEEEEeCCCC
Q 001184 1031 G-----SIGVFDAD-SLRLRCR---IAPSAYMSQASPNSQTVFPLVVTSHPQ--EPNQLAVGLT-DGSVKVIEPSET 1095 (1130)
Q Consensus 1031 g-----~i~vwd~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~-Dg~v~vW~~~~~ 1095 (1130)
+ .|.+|++. ++++... +.... ..+..++|+|. ++++|++++. +++|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-----------~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPT-----------SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSS-----------CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCC-----------CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 2 89999996 5654321 11111 01123677784 5788888876 489999998765
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=7.5e-17 Score=183.95 Aligned_cols=253 Identities=11% Similarity=0.023 Sum_probs=172.7
Q ss_pred ecCCCccEEE-----EEEcCCCCEEEEEeC-CC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC
Q 001184 405 VKDSSISVSR-----VAWSPDGNFIGVAFT-KH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1130)
Q Consensus 405 ~~~h~~~V~~-----v~~spdg~~las~~~-d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~ 476 (1130)
+..|...... .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4556655555 899999999999987 66 48888988876443 2345665666789999999 7888888
Q ss_pred CCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEe----------------------cCCcEEEEEccCCcc
Q 001184 477 DKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA----------------------VDGKIKAWLYDNVGS 533 (1130)
Q Consensus 477 d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------------------~dg~i~vwd~~~~~~ 533 (1130)
++.|++|| .+++....+..+...+....+..++++..++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 89999999 7777666666666656555554466777776432 346799999988754
Q ss_pred eeeecCCCccEEEEEEec-CCCeEEEeeecCC--CCcEEEEeeCCCCceeEEEecccC-ceeEEEEEcCCCCEEEEEeC-
Q 001184 534 RVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKE--GDSHLVEWNESEGALKRTYIGFRK-KSAGVVQFDTTRNRILAAGE- 608 (1130)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~- 608 (1130)
.. +..+...+..+.|+| ||+.|+.+..... ....|+++|..++... .+..+.. ..+...+|+|+|+.|+..+.
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 43 334455688999999 9999988764221 1457899998765543 3333332 35677899999997766443
Q ss_pred CC----cEEEEeCCCCceeEEEeccCC--C-CCcceEEEcCCCCEEEEE---------eCCCcEEEEEcCCC
Q 001184 609 DN----QIKFWDMDNVNMLTSTEAEGG--L-PSLPRLRFNKEGNLLVVT---------TADQGIKILANADG 664 (1130)
Q Consensus 609 dg----~i~vwd~~~~~~~~~~~~~~~--~-~~i~~v~~s~~~~~l~~~---------~~dg~i~iw~~~~~ 664 (1130)
++ .|++||+.+++.......... . .....+.|+|||+.|+.. ..+..|.+||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 399999999875443332210 0 012334799999988764 44568999998765
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=3.6e-16 Score=176.15 Aligned_cols=249 Identities=8% Similarity=0.038 Sum_probs=171.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEEec-CCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-----------
Q 001184 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQ-GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG----------- 475 (1130)
Q Consensus 408 h~~~V~~v~~spdg~~las~~~d~~i~vwd~~-~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s----------- 475 (1130)
....+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 33467889999999999999888 99999997 765432 1122212 236679999999853355553
Q ss_pred --CCCcEEEEe-c-CCCeeeEec----CCCcCEEEEeecccCCccEEEEEe-cCCcEEEEEcc-CCccee--eec--CCC
Q 001184 476 --DDKLIRVWD-L-SGRKLFQFE----GHEAPVYSVCPHQKENIHFIFSTA-VDGKIKAWLYD-NVGSRV--DYD--APG 541 (1130)
Q Consensus 476 --~d~~v~iwd-~-~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~vwd~~-~~~~~~--~~~--~~~ 541 (1130)
.++.+.+|+ . +|+....+. .+...+.+++|+| ++++++++. .++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 689999999 3 566554443 2556788999865 557777665 46899999998 554322 232 235
Q ss_pred ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC--CCcee---EEEeccc----C-c-------eeEEEE-EcCCCCEE
Q 001184 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGALK---RTYIGFR----K-K-------SAGVVQ-FDTTRNRI 603 (1130)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~---~~~~~~~----~-~-------~v~~~~-~~~~~~~l 603 (1130)
..+..++|+|||++++++.. .++.|.+|+.. +++.. ..+.... . . .+..++ |+|+|++|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 56899999999999988753 25788888654 56543 2222111 1 1 367799 99999998
Q ss_pred EEEeCC-C-----cEEEEeCC-CCceeEEEe-ccCCCCCcceEEEcC---CCCEEEEEeCC-CcEEEEEcCCC
Q 001184 604 LAAGED-N-----QIKFWDMD-NVNMLTSTE-AEGGLPSLPRLRFNK---EGNLLVVTTAD-QGIKILANADG 664 (1130)
Q Consensus 604 ~~~~~d-g-----~i~vwd~~-~~~~~~~~~-~~~~~~~i~~v~~s~---~~~~l~~~~~d-g~i~iw~~~~~ 664 (1130)
++++.+ + .|.+|++. +++...... ..........++|+| +|++|++++.+ +.|.+|+++..
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876543 2 89999996 566543221 111122467889999 89999999864 89999998654
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=1.4e-15 Score=170.23 Aligned_cols=312 Identities=9% Similarity=0.077 Sum_probs=206.9
Q ss_pred CccEEEEEe------cCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec------CCCCcEEEEeeCCCC
Q 001184 510 NIHFIFSTA------VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNESEG 577 (1130)
Q Consensus 510 ~~~~l~s~s------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~ 577 (1130)
++.+++... .|+.|.+||..+++....+.....+ .++|+|||++++++... ++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555543 4789999999888777666655444 89999999999988631 122578999999999
Q ss_pred ceeEEEeccc-----CceeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeEE-EeccCCCCCcceEEEcCCC-CEEE
Q 001184 578 ALKRTYIGFR-----KKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTS-TEAEGGLPSLPRLRFNKEG-NLLV 648 (1130)
Q Consensus 578 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~i~~v~~s~~~-~~l~ 648 (1130)
+.+..+.... ......++++|+|++++++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9888876421 123456899999999999874 58999999999988777 54322 2335667765 6778
Q ss_pred EEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCC
Q 001184 649 VTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI 728 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1130)
+.+.||.+.+|+.....+..... +
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~--~------------------------------------------------------ 191 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQS--R------------------------------------------------------ 191 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEE--E------------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeec--c------------------------------------------------------
Confidence 88999999999875421111000 0
Q ss_pred CCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccc
Q 001184 729 EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1130)
Q Consensus 729 ~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1130)
...+|+... . ...+.+++++..++..+.++.+.++|+.......
T Consensus 192 -----------~~~~~~~~~-------------------~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~----- 235 (361)
T 2oiz_A 192 -----------SKQMFSVKD-------------------D-PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV----- 235 (361)
T ss_dssp -----------CCCCSCTTT-------------------S-CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE-----
T ss_pred -----------ccceEcCCC-------------------C-ceEEEecccCCEEEEEeCCCeEEEEEecCCCcee-----
Confidence 000011000 0 0011224555556666667777777764321100
Q ss_pred cccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe------------CCeEEEEECCCceeEEEEeCCCCC
Q 001184 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG------------GGKVSLFNMMNFKVMTTFMSPPPA 876 (1130)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~------------dg~i~iwd~~~~~~~~~~~~~~~~ 876 (1130)
...|............ .......++++||++.+.++. .+.|.+||+.+++.+.++..+.
T Consensus 236 ----~~~~~~~~~~~~~~~~---~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-- 306 (361)
T 2oiz_A 236 ----DGPWSLLNDEDKAKNW---VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-- 306 (361)
T ss_dssp ----EEEEESCCHHHHHTTC---EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--
T ss_pred ----cccccccCcccccccc---ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--
Confidence 0011111100000000 001112378999988877653 2479999999999999998776
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEEEeecC--eEEEEEecCCCCeeEEEEccCCC
Q 001184 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVD--EVKTKLKGHQKHITGLAFSTNLN 930 (1130)
Q Consensus 877 i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~ 930 (1130)
+..++|+| ++++|++++. ++|.+||..++ +.+.++..+......++++|||+
T Consensus 307 p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999 7888888877 99999999999 99999877777789999999986
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=1e-16 Score=183.31 Aligned_cols=282 Identities=10% Similarity=-0.024 Sum_probs=183.3
Q ss_pred EEEEEEecCCCeEEEEEeCc--CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 350 VVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 350 V~~v~fspdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
+.+++|||||++++++...+ ..|.+||+.+++... +..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEEE
Confidence 77889999999755555443 368888998877543 122222223347899999999999
Q ss_pred eCCCeEEEEEecCCccceeeeeeecCCCCeeE-------------------EEEecCCCceEEEEE-----cCCCcEEEE
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVND-------------------LAFSYPNKQLCIVTC-----GDDKLIRVW 483 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~-------------------i~~s~d~~~l~l~s~-----s~d~~v~iw 483 (1130)
+.++.|.+||+.+++... ....+...... ++|+|+++. ++.+ ..+..|.+|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 999999999998876432 12223332222 356777773 3332 467789999
Q ss_pred e-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecC------CcEEEEEccCCcceeeecCC-CccEEEEEEecCCCe
Q 001184 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSADGSR 555 (1130)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~ 555 (1130)
| .+++. ..+..+...+..+.|+|. ++..|+..+.+ ..|.+||++........... ...+..++|+|||++
T Consensus 174 d~~~g~~-~~~~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGEL-EVIHQDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCE-EEEEEESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcE-EeeccCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 9 55554 444456778888888752 34556555443 35888887655433322221 336888999999999
Q ss_pred EEEeeecC-CCCcEEEEeeCCCCceeEEEecccCceeEEEEEcC-CCCEEEEEe----------------CCCcEEEEeC
Q 001184 556 LFSCGTSK-EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAG----------------EDNQIKFWDM 617 (1130)
Q Consensus 556 l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~dg~i~vwd~ 617 (1130)
|+.++... ...+.|++||+.+++....... .. .. ..|+| +|+++++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeC-CC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 88776421 1125599999988876544322 11 23 78999 999888754 3478999999
Q ss_pred CCCceeEEEeccCCC--------CCcceEEEcCCCCEEEEEeC-CCcEEEEEc
Q 001184 618 DNVNMLTSTEAEGGL--------PSLPRLRFNKEGNLLVVTTA-DQGIKILAN 661 (1130)
Q Consensus 618 ~~~~~~~~~~~~~~~--------~~i~~v~~s~~~~~l~~~~~-dg~i~iw~~ 661 (1130)
.+++........... ..+..++|+|+|+.|+.++. ++...+|.+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 888754333222110 01466899999998887765 455555554
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=5.4e-16 Score=177.35 Aligned_cols=180 Identities=11% Similarity=0.101 Sum_probs=116.2
Q ss_pred CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC------CcEEEEEeecCeEEEEEecCC--CCeeEEE
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED------STIQIYNVRVDEVKTKLKGHQ--KHITGLA 924 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~~~~l~~h~--~~V~~l~ 924 (1130)
+..|.+||+.+++..... .+...+..+.|+|+++..|+..+.+ ..|++|++.+++.. .+..+. ..+..++
T Consensus 167 ~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEF 244 (396)
T ss_dssp CEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEE
T ss_pred cceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceE
Confidence 346788888877665444 3556788999999445555555443 35888888766543 333332 2578899
Q ss_pred EccCCCeEEEEeCC-----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC-CCcEEEEE---------------
Q 001184 925 FSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS-DQVRLLVN--------------- 983 (1130)
Q Consensus 925 ~s~dg~~L~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~--------------- 983 (1130)
|+|||++|+.++.+ +.|++||+.+++..... ... ... +.|+| ||++++++
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~--~~~------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM--VMP------PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE--ECC------SEE-EEEECSSSSEEEEEECCC----------C
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee--eCC------CCC-CCccCCCCceEEEecCCcceeeccccccc
Confidence 99999988877654 44999999886542211 111 122 88999 99988863
Q ss_pred --cCCcEEEEECCCceeeeeeecCCCC--------CCCeEEEEECCCCCEEEEEeC-CCc--EEEEeCCCcccc
Q 001184 984 --HETQLAIYDGSKMECIRQWVPQDVL--------SSPISSAAYSCNSQLIYATFT-DGS--IGVFDADSLRLR 1044 (1130)
Q Consensus 984 --~d~~i~v~d~~~~~~~~~~~~~~~~--------~~~v~~v~~s~dg~~l~t~~~-Dg~--i~vwd~~~~~~~ 1044 (1130)
.+..|++||+.+++.. .+..+... ...+..++|+|||+.|+.++. ++. |+++++.+++..
T Consensus 316 ~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp CCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred cCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 2468999999887753 33333100 002567899999998887774 455 445566655543
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=1.7e-13 Score=160.67 Aligned_cols=330 Identities=12% Similarity=0.071 Sum_probs=229.0
Q ss_pred CCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC--CCceeEEEecc
Q 001184 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGALKRTYIGF 586 (1130)
Q Consensus 509 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~~~~~~~ 586 (1130)
+.+.++++...+++|.++|..+.+....+... ..+..+.|+|||+++++++. ++.|.+||+. +++.+..+...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~----dg~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEECC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcC----CCeEEEEECCCCCCcEeEEEecC
Confidence 34456777788999999999988777766543 34678999999999998864 7899999995 78888777642
Q ss_pred cCceeEEEEEc----CCCCEEEEEeC-CCcEEEEeCCCCceeEEEeccCC---------CCCcceEEEcCCCCEEE-EEe
Q 001184 587 RKKSAGVVQFD----TTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGG---------LPSLPRLRFNKEGNLLV-VTT 651 (1130)
Q Consensus 587 ~~~~v~~~~~~----~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~---------~~~i~~v~~s~~~~~l~-~~~ 651 (1130)
. ....++|+ |+|+++++++. ++.|.++|..+.+.+..+...+. ...+..+..++++..++ ...
T Consensus 240 ~--~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 240 S--EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp S--EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred C--CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 2 45678999 69998888764 58999999999999888764321 11345566666544333 333
Q ss_pred CCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCc
Q 001184 652 ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKP 731 (1130)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1130)
.+|.|.++|..+..
T Consensus 318 ~~g~v~~vd~~~~~------------------------------------------------------------------ 331 (567)
T 1qks_A 318 ETGKILLVDYTDLN------------------------------------------------------------------ 331 (567)
T ss_dssp TTTEEEEEETTCSS------------------------------------------------------------------
T ss_pred CCCeEEEEecCCCc------------------------------------------------------------------
Confidence 44666666543220
Q ss_pred ccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccc
Q 001184 732 RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAV 811 (1130)
Q Consensus 732 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 811 (1130)
.+.+..+
T Consensus 332 ----------------------------------------------------------~~~v~~i--------------- 338 (567)
T 1qks_A 332 ----------------------------------------------------------NLKTTEI--------------- 338 (567)
T ss_dssp ----------------------------------------------------------EEEEEEE---------------
T ss_pred ----------------------------------------------------------cceeeee---------------
Confidence 0000000
Q ss_pred ccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeC-----CCCCeEEEEEeC
Q 001184 812 APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHP 884 (1130)
Q Consensus 812 ~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp 884 (1130)
........+.|+|||++++++. +++|.++|+.+++.+..+.. |.+.-..+ ++|
T Consensus 339 -------------------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p 398 (567)
T 1qks_A 339 -------------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHP 398 (567)
T ss_dssp -------------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EET
T ss_pred -------------------eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECC
Confidence 0123355788999999988776 68899999999998877764 22212122 578
Q ss_pred CCCcEEEEEe-CCCcEEEEEeec-------CeEEEEEecCCCCeeEEEEccCCCeEEEEeC-------CCcEEEEECCCC
Q 001184 885 QDNNIIAIGM-EDSTIQIYNVRV-------DEVKTKLKGHQKHITGLAFSTNLNILVSSGS-------DAQLIFWNTDTW 949 (1130)
Q Consensus 885 ~~~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-------Dg~i~vwd~~~~ 949 (1130)
+++.+.+++. .+++|.++|..+ .+.+.++......-..+.++||+++|.+... ..+|.++|+.+.
T Consensus 399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 4466666654 468999999988 6788888765444455789999999998763 358999999876
Q ss_pred cc---cce-eeEecc----CCCCCCCeEEEEEcCCCcEEEEE------cCCcEEEEECCCceeeeeeec
Q 001184 950 EK---RKS-IAIQLP----AGKLPVGETRVQFHSDQVRLLVN------HETQLAIYDGSKMECIRQWVP 1004 (1130)
Q Consensus 950 ~~---~~~-~~~~~~----~~~~~~~v~~~~~s~d~~~l~~~------~d~~i~v~d~~~~~~~~~~~~ 1004 (1130)
+. ... ..+... .......+..+.|+++|+.+.++ .++.|.|+|.++++.+..+..
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 11 111 111110 01112568899999999988875 268999999999999888764
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.69 E-value=6.2e-15 Score=164.87 Aligned_cols=271 Identities=11% Similarity=0.073 Sum_probs=184.4
Q ss_pred CCCeEEEEE-----eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe----
Q 001184 358 FHHTLLVVG-----CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF---- 428 (1130)
Q Consensus 358 dg~~llasg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~---- 428 (1130)
++++++++. ..|+.|.+||..+++.+. .+..+..+ .++|||||++|+++.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~-------------------~i~~g~~p--~i~~spdg~~lyv~~~~~~ 72 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLG-------------------MVPTAFNG--HVQVSNDGKKIYTMTTYHE 72 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEE-------------------EEECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEE-------------------EecCCCCC--ceEECCCCCEEEEEEeccc
Confidence 555544443 237899999999988764 23334444 899999999999886
Q ss_pred ------CCCeEEEEEecCCccceeeeeeec---CCCCeeEEEEecCCCceEEEEEc--CCCcEEEEe-cCCCeeeE-ecC
Q 001184 429 ------TKHLIHLYTYQGSNDLCQSLEIDA---HVGGVNDLAFSYPNKQLCIVTCG--DDKLIRVWD-LSGRKLFQ-FEG 495 (1130)
Q Consensus 429 ------~d~~i~vwd~~~~~~~~~~~~~~~---h~~~V~~i~~s~d~~~l~l~s~s--~d~~v~iwd-~~~~~~~~-~~~ 495 (1130)
.++.|.+||..+++.+........ +......++|+|||+ +|+++. .+++|.+|| .+++.+.. +.
T Consensus 73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~- 149 (361)
T 2oiz_A 73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA- 149 (361)
T ss_dssp TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG-
T ss_pred ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec-
Confidence 367899999988776553322111 234577899999999 455554 368999999 77777766 44
Q ss_pred CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee-------eecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-------DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
+.+ ...+.+.|.+ ...+++.+.||.+.+|+++...... .+.....+ ..+.+++++..++..+. ++.
T Consensus 150 ~~~-~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~~ 222 (361)
T 2oiz_A 150 AAG-CWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YGN 222 (361)
T ss_dssp GTT-EEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TSE
T ss_pred CCC-cceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CCe
Confidence 222 2223444443 2577888999999999987533322 11222222 23345677877776654 678
Q ss_pred EEEeeCCCCcee--EEEeccc------C---ceeEEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCCceeEEE
Q 001184 569 LVEWNESEGALK--RTYIGFR------K---KSAGVVQFDTTRNRILAAGE-----------DNQIKFWDMDNVNMLTST 626 (1130)
Q Consensus 569 i~~wd~~~~~~~--~~~~~~~------~---~~v~~~~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~ 626 (1130)
++++|....... ..+.... . .....++|+|++++++++.. .+.|.+||+.+++.+..+
T Consensus 223 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i 302 (361)
T 2oiz_A 223 VYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI 302 (361)
T ss_dssp EEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE
Confidence 999998755422 2221100 0 01123689999998887653 348999999999999998
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 627 ~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
..+. ...++|+|||++|++++. +.|.+||..++
T Consensus 303 ~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 303 PGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 7654 799999999999998887 99999999876
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.7e-14 Score=159.48 Aligned_cols=245 Identities=15% Similarity=0.122 Sum_probs=182.9
Q ss_pred CCEEEEEEecCCCeEEEEEeCc------------------------CeEEEEeCCCCceeecccceeeeccccccceeee
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGD------------------------GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAA 403 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1130)
..|.+++++|+|+ ++++...+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 5799999999997 67777766 4799999988876541
Q ss_pred eecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCc-cceeeeee---------ecCCCCeeEEEEec-CCCceEEE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-DLCQSLEI---------DAHVGGVNDLAFSY-PNKQLCIV 472 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~---------~~h~~~V~~i~~s~-d~~~l~l~ 472 (1130)
.-.++-.....++++|+|+++++...++.|++||..+.. .+. .+ .++......++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 122455678999999999999888889999999986542 222 22 24455789999999 677 677
Q ss_pred EEc-CCCcEEEEecCCCeeeEecCC----------CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec--C
Q 001184 473 TCG-DDKLIRVWDLSGRKLFQFEGH----------EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--A 539 (1130)
Q Consensus 473 s~s-~d~~v~iwd~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~ 539 (1130)
+.+ .++.|++||.+|..+..+... -.....+++.++ .+.++++...+++|++|+.++++....+. .
T Consensus 160 ~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 160 SDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp EECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred EeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 776 699999999888888877532 234788988653 25778888889999999998776666553 3
Q ss_pred CCccEEEEEEecCCCeEEEeee---cCCCCcEEEEeeCCCCceeEEEe---cccCceeEEEEEcCCCCEEEEEeCCCcEE
Q 001184 540 PGLWCTTMLYSADGSRLFSCGT---SKEGDSHLVEWNESEGALKRTYI---GFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1130)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~---~~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1130)
....+..++|+| +..++..+. .......|++||..+++.+..+. ++. .....++++|+|..+++...++.|+
T Consensus 239 ~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~-~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 239 FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHF-DMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCC-SSEEEEEECTTSEEEEEESSSCCEE
T ss_pred cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCcc-CCeeEEEECCCCCEEEEECCCCEEE
Confidence 455788999999 433333321 01225689999999999988874 322 3577899999998788888899999
Q ss_pred EEeCCC
Q 001184 614 FWDMDN 619 (1130)
Q Consensus 614 vwd~~~ 619 (1130)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=1.1e-14 Score=178.91 Aligned_cols=250 Identities=12% Similarity=0.018 Sum_probs=175.9
Q ss_pred eecCCCccEEEEEEcCCCCEEEEE--eCCCeEEEEEecCCccceeeeeeecCCCCee---------EEEEe--cCCCceE
Q 001184 404 IVKDSSISVSRVAWSPDGNFIGVA--FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVN---------DLAFS--YPNKQLC 470 (1130)
Q Consensus 404 ~~~~h~~~V~~v~~spdg~~las~--~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~---------~i~~s--~d~~~l~ 470 (1130)
.+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~- 93 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL- 93 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-
Confidence 466889999999999987777777 568899999975443332 4556666666 66676 999941
Q ss_pred EEEEc-CCCcEEEEecC--C-CeeeEecC-----CCcCEEEEeecccCCccEEEEEecC----------CcEEEEEccCC
Q 001184 471 IVTCG-DDKLIRVWDLS--G-RKLFQFEG-----HEAPVYSVCPHQKENIHFIFSTAVD----------GKIKAWLYDNV 531 (1130)
Q Consensus 471 l~s~s-~d~~v~iwd~~--~-~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d----------g~i~vwd~~~~ 531 (1130)
|+.++ .+..|.+|+.. + .....+.. |...+.+++|+| ||+.|++++.+ ..|++||+.+.
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 44443 46677777755 4 55666666 677788888865 56788888877 58999999872
Q ss_pred -----cceeeec-CCCccEEEEEEecCCCeEEEeeecCC----CCcEEEEeeCC-CC---ceeEEEecccCceeEEEEEc
Q 001184 532 -----GSRVDYD-APGLWCTTMLYSADGSRLFSCGTSKE----GDSHLVEWNES-EG---ALKRTYIGFRKKSAGVVQFD 597 (1130)
Q Consensus 532 -----~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~v~~~~~~ 597 (1130)
.....+. .+...+..++|+|||++|+.++.+.. ....|++||+. ++ +.. .+...+...+..+.|+
T Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~-~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 172 AAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR-TLLGGPEEAIAQAEWA 250 (662)
T ss_dssp TTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE-EEEEETTBCEEEEEEC
T ss_pred ccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE-EeCCCCCceEcceEEC
Confidence 3334444 45567888999999999998875321 13689999998 56 343 3333333478889999
Q ss_pred CCCCEEEEEeCCC--cEEEEeCCCCceeEEEeccCCC------CCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 598 TTRNRILAAGEDN--QIKFWDMDNVNMLTSTEAEGGL------PSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 598 ~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~------~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
|||+++++++.++ .|++||+.+++.......+... ..+..++|+|++++++++.. +.++||.+
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 9999777787788 6777777677654443322211 01467888899998888888 88888854
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=1.8e-13 Score=160.50 Aligned_cols=323 Identities=11% Similarity=0.110 Sum_probs=214.9
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceeEEEeccCCCCCcceEEEc--
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD--NVNMLTSTEAEGGLPSLPRLRFN-- 641 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~i~~v~~s-- 641 (1130)
++.|.++|..+++.+..+.... ....+.|+|+|+++++++.|+.|.+||+. +++.+..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s~~ 250 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETSKM 250 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEECCS
T ss_pred CCeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEccc
Confidence 7899999999999998887433 45689999999999999999999999996 788887776533 35789999
Q ss_pred --CCCCEEEEEeC-CCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccc
Q 001184 642 --KEGNLLVVTTA-DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1130)
Q Consensus 642 --~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~ 718 (1130)
|||++++++.. ++.+.++|..+. +.++.+..
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~-~~~~~i~~--------------------------------------------- 284 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQST--------------------------------------------- 284 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEEC---------------------------------------------
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCC-cEEEEEec---------------------------------------------
Confidence 69998887765 588999986554 11111100
Q ss_pred cCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCC
Q 001184 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1130)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1130)
.+..
T Consensus 285 ------------------------------------------------------------------~~~~---------- 288 (567)
T 1qks_A 285 ------------------------------------------------------------------RGMT---------- 288 (567)
T ss_dssp ------------------------------------------------------------------CEEC----------
T ss_pred ------------------------------------------------------------------cccc----------
Confidence 0000
Q ss_pred CCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEe-CCCC
Q 001184 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFM-SPPP 875 (1130)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~-~~~~ 875 (1130)
.+ +.. . .....+..+.+++++..++... .|.|.++|..+.+.+.... ....
T Consensus 289 -----------------~~---~~~----~--~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~ 342 (567)
T 1qks_A 289 -----------------YD---EQE----Y--HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER 342 (567)
T ss_dssp -----------------TT---TCC----E--ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred -----------------cc---ccc----c--cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccc
Confidence 00 000 0 0122455566677666555443 5888888887654322211 2334
Q ss_pred CeEEEEEeCCCCcEEEEEe-CCCcEEEEEeecCeEEEEEec-----CCCCeeEEEEccCCCeEE-EEe-CCCcEEEEECC
Q 001184 876 ASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRVDEVKTKLKG-----HQKHITGLAFSTNLNILV-SSG-SDAQLIFWNTD 947 (1130)
Q Consensus 876 ~i~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~-----h~~~V~~l~~s~dg~~L~-s~s-~Dg~i~vwd~~ 947 (1130)
....+.|+| ++++++++. .++.|.++|+.+++++..+.. |.+.-.. -++|++..+. +.. .+++|.++|..
T Consensus 343 ~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 343 FLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp SEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred cccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCC
Confidence 577889999 677665554 678999999999998877654 4332222 2578755544 443 46899999998
Q ss_pred CC-------cccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc--------CCcEEEEECCCc-----ee-eeeee---
Q 001184 948 TW-------EKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--------ETQLAIYDGSKM-----EC-IRQWV--- 1003 (1130)
Q Consensus 948 ~~-------~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--------d~~i~v~d~~~~-----~~-~~~~~--- 1003 (1130)
+. +.... +... + ..-..+..+|++++|.+.. .+.|.|+|+.+. .. +..+.
T Consensus 421 ~~~~~~~~~kvv~~--i~~~-g---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~ 494 (567)
T 1qks_A 421 PEGHPDNAWKILDS--FPAL-G---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAE 494 (567)
T ss_dssp TTTCTTTBTSEEEE--EECS-C---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHH
T ss_pred CCCCccccCEEEEE--EecC-C---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccc
Confidence 72 22211 1111 1 2234577899999999854 358999999877 21 12221
Q ss_pred --cCCCCCCCeEEEEECCCCCEEEEEe-----CCCcEEEEeCCCcccccccCC
Q 001184 1004 --PQDVLSSPISSAAYSCNSQLIYATF-----TDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 1004 --~~~~~~~~v~~v~~s~dg~~l~t~~-----~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
........+..+.|++||+.+.++. .++.|.|+|..++++...+..
T Consensus 495 ~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 495 WAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp HHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred ccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 1111145789999999999877764 379999999999998888763
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.66 E-value=1.2e-13 Score=149.77 Aligned_cols=245 Identities=14% Similarity=0.156 Sum_probs=178.0
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE-cCCCCEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-SPDGNFI 424 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-spdg~~l 424 (1130)
+-..+.+++++|+|+ ++++...++.|.+||.. ++.+.... .. ....+|...+..+++ .++++++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~-----~~--------~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFG-----EC--------GKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEEC-----CB--------SSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEec-----cc--------CCCcccccCceEEEEEcCCCeEE
Confidence 446799999999997 68888889999999987 44432100 00 001245567899999 5788777
Q ss_pred EEEeC-CCeEEEEEecCCccceeeeeee-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec--CCCcCE
Q 001184 425 GVAFT-KHLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE--GHEAPV 500 (1130)
Q Consensus 425 as~~~-d~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~--~h~~~v 500 (1130)
++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||.+++.+..+. ++...+
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCc
Confidence 77643 78999999 4555443 232 3445789999999998 7888888899999997788777764 455678
Q ss_pred EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC--ccEEEEEEecCCCeEEEeeecCCCCc-EEEEeeCCCC
Q 001184 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG--LWCTTMLYSADGSRLFSCGTSKEGDS-HLVEWNESEG 577 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~-~i~~wd~~~~ 577 (1130)
..+++++ ++.++++...++.|++||.+. .....+.... ..+..++++++|+.+++... ++ .|.+||. ++
T Consensus 167 ~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~-~g 238 (286)
T 1q7f_A 167 NGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ-DG 238 (286)
T ss_dssp EEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT-TS
T ss_pred EEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC-CC
Confidence 8998865 557777778899999999743 3444444332 46889999999988777653 54 8999995 56
Q ss_pred ceeEEEecccC-ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001184 578 ALKRTYIGFRK-KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1130)
Q Consensus 578 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 620 (1130)
+.+..+..+.. .....++++|+|+.+++ +.++.|++|++...
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 67776665432 23668999999976666 67999999998654
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=2e-14 Score=159.00 Aligned_cols=251 Identities=11% Similarity=0.052 Sum_probs=183.0
Q ss_pred CCceeEEEEecCCCEEEEEe-C------------------------CeEEEEECCCceeEEEEe-CCCCCeEEEEEeCCC
Q 001184 833 EDVVPCVALSKNDSYVMSAG-G------------------------GKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQD 886 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-d------------------------g~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~~ 886 (1130)
-..+.+++++++|+++++.. + ++|.+||..+++.+..+. .+......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 46789999999999998877 4 379999999998877665 3446789999999 7
Q ss_pred CcEEEEEeCCCcEEEEEeecCe-EEEEE---------ecCCCCeeEEEEcc-CCCeEEEEe-CCCcEEEEECCCCcccce
Q 001184 887 NNIIAIGMEDSTIQIYNVRVDE-VKTKL---------KGHQKHITGLAFST-NLNILVSSG-SDAQLIFWNTDTWEKRKS 954 (1130)
Q Consensus 887 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-dg~~L~s~s-~Dg~i~vwd~~~~~~~~~ 954 (1130)
++++++...++.|++|+..... .+..+ .++.....+|+++| +|..+++.+ .++.|++|+.+ ++....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEE
Confidence 8888888889999999986542 45555 34555789999999 788888876 68999999954 332222
Q ss_pred eeEeccC----CCCCCCeEEEEEcCC-CcEEEEE-cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEE-
Q 001184 955 IAIQLPA----GKLPVGETRVQFHSD-QVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT- 1027 (1130)
Q Consensus 955 ~~~~~~~----~~~~~~v~~~~~s~d-~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~- 1027 (1130)
....-.. ...-.....++++|+ +.++++. .++.|++|+..+|+.+..+... .+...+.+++|+| +..+++.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEET-TEEEEEEC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecC-CEEEEeCC
Confidence 1111000 001134789999999 6655553 5789999999989988887543 3356788999999 4333333
Q ss_pred ------eCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1028 ------FTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1028 ------~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
..+..|++|++.+++.+..+... .++...+..++++|+ +.++++...+++|.+|++....
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~--------~~~~~~p~~ia~~~d-G~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV--------RKHFDMPHDIVASED-GTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCS--------SSCCSSEEEEEECTT-SEEEEEESSSCCEEEEEEEECS
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCC--------CCccCCeeEEEECCC-CCEEEEECCCCEEEEEeCCccc
Confidence 33558999999999988776421 122344667888884 6899999999999999987644
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=2.7e-14 Score=159.86 Aligned_cols=264 Identities=10% Similarity=0.108 Sum_probs=177.0
Q ss_pred CCCCEEEEEEecCCCeEEEEEe--------CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGC--------GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 417 (1130)
.-..+...+| ||++++++.. .++.|.+||+.+++... + ..+.+++|
T Consensus 13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~ 66 (347)
T 2gop_A 13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRI 66 (347)
T ss_dssp CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEE
T ss_pred eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEE
Confidence 3456788888 8987555432 25679999998876432 2 46889999
Q ss_pred cCCCCEEEEEeCC---C--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC----------------
Q 001184 418 SPDGNFIGVAFTK---H--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD---------------- 476 (1130)
Q Consensus 418 spdg~~las~~~d---~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~---------------- 476 (1130)
||||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 67 SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~ 139 (347)
T 2gop_A 67 SPDGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPA 139 (347)
T ss_dssp CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCC
T ss_pred CCCCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccce
Confidence 9999999988754 3 47788888765432 222333 99999999999 4555442
Q ss_pred -----------CCcEEEEe-cCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCC-------cEEEEEccCCcceeee
Q 001184 477 -----------DKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG-------KIKAWLYDNVGSRVDY 537 (1130)
Q Consensus 477 -----------d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-------~i~vwd~~~~~~~~~~ 537 (1130)
...|.+|| .+++.+..+.. . .+..++|+ +++ +++++..++ ...+|.++ ......+
T Consensus 140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l 213 (347)
T 2gop_A 140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKM 213 (347)
T ss_dssp C---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEE
T ss_pred eecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEe
Confidence 25789999 45554355655 3 77788886 456 777776542 45666665 3333333
Q ss_pred cCCCccEEEEEEecCCCeEEEeeecCC----CCcEEEEeeCCCCceeEEEecccCceeEE-EEEcCCCCEEEEEeCCCcE
Q 001184 538 DAPGLWCTTMLYSADGSRLFSCGTSKE----GDSHLVEWNESEGALKRTYIGFRKKSAGV-VQFDTTRNRILAAGEDNQI 612 (1130)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i 612 (1130)
..+ ..+..+ +|||++|+.++.... ....|++|| +++....... ....+.. +.|+ ++ .+++++.++.+
T Consensus 214 ~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 214 FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE-VDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT-CCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc-CCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 333 444444 999999988764221 246899999 5554433333 3336665 8899 88 88889999999
Q ss_pred EEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcE-EEEEcC
Q 001184 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI-KILANA 662 (1130)
Q Consensus 613 ~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i-~iw~~~ 662 (1130)
++| +.+++....... ...+.+++|+| .++++++.++.. .+|.++
T Consensus 286 ~l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 286 NLY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 999 876665444332 23688999999 677777777665 777765
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=8.9e-15 Score=179.65 Aligned_cols=286 Identities=10% Similarity=0.014 Sum_probs=186.9
Q ss_pred cCCCCEEEEEEecCCCeEEEEE--eCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEE---------
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVG--CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS--------- 413 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--------- 413 (1130)
+|...|..++|++++- ++++. +.++...||....+.... .+..|...+.
T Consensus 21 ~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 21 SRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYSGF 80 (662)
T ss_dssp HTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTCCC
T ss_pred hcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccCCc
Confidence 4888999999998864 45555 557889999964333222 1334444444
Q ss_pred EEEEc--CCCCE-EEEEeC-CCeEEEEEec--C-Cccceeeeeeec-----CCCCeeEEEEecCCCceEEEEEcCC----
Q 001184 414 RVAWS--PDGNF-IGVAFT-KHLIHLYTYQ--G-SNDLCQSLEIDA-----HVGGVNDLAFSYPNKQLCIVTCGDD---- 477 (1130)
Q Consensus 414 ~v~~s--pdg~~-las~~~-d~~i~vwd~~--~-~~~~~~~~~~~~-----h~~~V~~i~~s~d~~~l~l~s~s~d---- 477 (1130)
..+|+ |||++ ||.++. +..|.+|++. + +. .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~ 154 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGE 154 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSS
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCC
Confidence 55565 99999 887654 4566666665 3 43 22 2344 677899999999999 67777666
Q ss_pred ------CcEEEEecCC------CeeeEec-CCCcCEEEEeecccCCccEEEEEecC--------CcEEEEEcc-CC---c
Q 001184 478 ------KLIRVWDLSG------RKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVD--------GKIKAWLYD-NV---G 532 (1130)
Q Consensus 478 ------~~v~iwd~~~------~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~vwd~~-~~---~ 532 (1130)
..|++||..+ .....+. .+...+..++|+ +||+.|+.++.+ ..|.+||++ ++ .
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999554 4556666 666777777775 566888877755 379999998 45 2
Q ss_pred ceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCc-------eeEEEEEcCCCCEEEE
Q 001184 533 SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK-------SAGVVQFDTTRNRILA 605 (1130)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~ 605 (1130)
.......+...+..+.|+|||++++++. .++...|++||..+++.......+... .+..++|+++++++++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEEC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEEC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 3333333456789999999999555543 233448999998777655443332211 0456889999999999
Q ss_pred EeCCCcEEEE--eCCCCceeEEEeccCCCCCcceE-EEcCCCCEEEEEeCCCcEEEE--EcCCC
Q 001184 606 AGEDNQIKFW--DMDNVNMLTSTEAEGGLPSLPRL-RFNKEGNLLVVTTADQGIKIL--ANADG 664 (1130)
Q Consensus 606 ~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~i~~v-~~s~~~~~l~~~~~dg~i~iw--~~~~~ 664 (1130)
++. +.+++| |+.+++ +..+..+. ..+..+ +++.+.-.++.++.+....+| ++.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGPW--TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCCC--CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 999999 655555 45554442 245555 454443344445555544554 54444
No 179
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=1.6e-13 Score=148.54 Aligned_cols=245 Identities=13% Similarity=0.105 Sum_probs=178.8
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeee---ecCCCCeeEEEEe-cCCCceEEEEEc-CCCcEE
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI---DAHVGGVNDLAFS-YPNKQLCIVTCG-DDKLIR 481 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~---~~h~~~V~~i~~s-~d~~~l~l~s~s-~d~~v~ 481 (1130)
++-..+.+++++|+|+++++...++.|.+||.. ++.+...... .+|...+.++++. +++. ++++.. .++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 455679999999999998888889999999987 4433321110 1345678999995 6665 555554 388999
Q ss_pred EEecCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec--CCCccEEEEEEecCCCeEEE
Q 001184 482 VWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 482 iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~ 558 (1130)
+||.+++.+..+. .+...+..+++.+ ++.++++...++.|.+||.+. .....+. .+...+..++++++|+.+++
T Consensus 104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EECCCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 9998888877764 3446788898865 557777777889999999653 3333332 23346899999999987766
Q ss_pred eeecCCCCcEEEEeeCCCCceeEEEeccc-CceeEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCceeEEEeccCCCCCcc
Q 001184 559 CGTSKEGDSHLVEWNESEGALKRTYIGFR-KKSAGVVQFDTTRNRILAAGEDN-QIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~i~ 636 (1130)
... ++.|++||. +++.+..+.... ......++++++|+.+++...++ .|++||. +++.+..+..+.....+.
T Consensus 181 ~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 181 DNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp EGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred ECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 543 789999997 456666665432 13577899999998888887776 9999995 566777776554433467
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001184 637 RLRFNKEGNLLVVTTADQGIKILANADG 664 (1130)
Q Consensus 637 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 664 (1130)
+++++|+|+++++ +.++.|++|+....
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 8999999986666 67999999997543
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.64 E-value=6.2e-10 Score=138.99 Aligned_cols=586 Identities=11% Similarity=0.061 Sum_probs=337.4
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...|+++.-.++|. |=.|+.+| +..||-.+ |+.+....... ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~~~------~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGYA--------FTVYQHNEDDP------NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSSC--------EEEECCCTTCT------TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCCc--------eEEEeCCCCCC------CcccccceeEEEECCCCCEEE-
Confidence 45899999999995 44566666 56666331 22221110000 000235799999999998665
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCC----CCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecC-C-CcC-
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHV----GGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG-H-EAP- 499 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~----~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~-h-~~~- 499 (1130)
|+.+| +..||..+++... +.... ..|.++...++|. +.+.. . +.+..||........+.. + ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi~t-~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLIST-P-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEEEE-T-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEEEE-C-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44555 8899987754221 21111 1288999988887 44443 3 458899943333322221 1 123
Q ss_pred EEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-cCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
|.++.... ++ .|..++.++.+..|+..+....... ......|.++...++|...+... .+-|..||..+++
T Consensus 175 i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQ--GD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEE--TT-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEECC--CC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 77776543 33 4555676666888887665433221 12345688888888887666542 3348899987765
Q ss_pred eeEEEecc------cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc-----CCCCCcceEEEcCCCCEE
Q 001184 579 LKRTYIGF------RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-----GGLPSLPRLRFNKEGNLL 647 (1130)
Q Consensus 579 ~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~i~~v~~s~~~~~l 647 (1130)
........ ....|.++...++|... .|+.+ .|.+||..+++........ -....|.++...++|. |
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-l 323 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-M 323 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-E
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-E
Confidence 44322211 12368888888877644 45555 5899998877654332211 1123688899999887 4
Q ss_pred EEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccC
Q 001184 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1130)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1130)
.+|+.++-|..|+..... +..+. +.
T Consensus 324 Wigt~~~Gl~~~~~~~~~--~~~~~-------------------------~~---------------------------- 348 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRNR--FKNIR-------------------------NI---------------------------- 348 (795)
T ss_dssp EEEESSSCEEEECGGGGS--SEEEC-------------------------CC----------------------------
T ss_pred EEEECCCCeEEeCCCccc--ceEEc-------------------------CC----------------------------
Confidence 557777778888754320 10000 00
Q ss_pred CCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccc
Q 001184 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1130)
Q Consensus 728 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1130)
.. ...-....|.++...++|. |-+++.++-+..|+...+...
T Consensus 349 --------------------~~------------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~----- 390 (795)
T 4a2l_A 349 --------------------PY------------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT----- 390 (795)
T ss_dssp --------------------TT------------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE-----
T ss_pred --------------------CC------------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE-----
Confidence 00 0000234577888877776 445666656766654322110
Q ss_pred ccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEe----CCCCCeEEEEE
Q 001184 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFM----SPPPASTFLAF 882 (1130)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~ 882 (1130)
.+....+... ..-....|.+++..++|+.|-+|. ++.|.+||..+++...... .....|.++..
T Consensus 391 -------~~~~~~~~~~----~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~ 459 (795)
T 4a2l_A 391 -------SYTLQEDESA----RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILP 459 (795)
T ss_dssp -------EECCC----------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEE
T ss_pred -------EEecCCCCcc----cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEE
Confidence 0000000000 001246789999999998344444 6889999998876543322 13456889988
Q ss_pred eCCCCcEEEEEeCCCcEEEEEeecCeEEEEEec------CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceee
Q 001184 883 HPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG------HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956 (1130)
Q Consensus 883 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~------h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~ 956 (1130)
.+ ++.+.+ |+.+ -+.+|+..+++....... +...|.++...++|+..+... . -|..|+..+++. ...
T Consensus 460 d~-~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~~~ 532 (795)
T 4a2l_A 460 DG-EGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--QKA 532 (795)
T ss_dssp CS-SSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--EEC
T ss_pred CC-CCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--EEe
Confidence 88 666555 4444 488999887765432211 235789999999988766554 4 488899876543 110
Q ss_pred Ee-ccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCC-CCCCeEEEEECCCCCEEEEEeCCCcEE
Q 001184 957 IQ-LPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV-LSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1130)
Q Consensus 957 ~~-~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~v~~v~~s~dg~~l~t~~~Dg~i~ 1034 (1130)
.. ....-....+.++...++|.+.+++.. .+..||..+++... +....+ ....|.++...++|.+.+++ ++-|.
T Consensus 533 ~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~ 608 (795)
T 4a2l_A 533 SILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST--NRGIS 608 (795)
T ss_dssp CCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEE
T ss_pred cCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc--CCceE
Confidence 00 011112256889999999997776655 89999988765433 222111 24578999999999876655 34577
Q ss_pred EEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1035 VFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1035 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
.|+..+++.. .+....-+ .......-++...+ ++ .|..|+.+| +..++...
T Consensus 609 ~~~~~~~~~~-~~~~~dGl-----~~~~f~~~~~~~~~-~G-~l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 609 CFNPETEKFR-NFTESDGL-----QSNQFNTASYCRTS-VG-QMYFGGING-ITTFRPEL 659 (795)
T ss_dssp EEETTTTEEE-EECGGGTC-----SCSCEEEEEEEECT-TS-CEEEEETTE-EEEECGGG
T ss_pred EEcCCCCcEE-EcCCcCCC-----ccccCccCceeECC-CC-eEEEecCCc-eEEEcHHH
Confidence 8898776543 22211101 11112122344444 45 466677788 66777654
No 181
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.63 E-value=7.1e-10 Score=138.41 Aligned_cols=535 Identities=8% Similarity=0.024 Sum_probs=318.4
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...|.++...++|. |-.|+.+ -+..||..+++...- ... .......|.++...++|++.+.
T Consensus 87 ~n~I~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~~------~~~----------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR--VWIGTRD-GLSRYDEEKDIFQNF------FYE----------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEE------CCE----------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC--EEEEeCC-chheeCCCCCeEEec------ccc----------ccCCCceEEEEEECCCCCEEEE
Confidence 35799999999997 3345554 489999887654321 000 0000011888988888876664
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecC-CCC-eeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEe-cCCCcCEEE
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAH-VGG-VNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHEAPVYS 502 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~-V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~-~~h~~~v~~ 502 (1130)
. . +-|..||.++++... . ..++ ... |.++...+++. +.+ ++.++.+..|| .+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~--lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ--IYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE--EEE-EESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC--EEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 4 448899987654221 1 0011 123 88888888886 333 55555688899 444433221 123456777
Q ss_pred EeecccCCccEEEEEecCCcEEEEEccCCcceeeec-------CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCC
Q 001184 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-------APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1130)
+.... ++ .|..++.++.+..||..+........ .....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQS--PT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEEE--TT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEcC--CC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 76543 33 45566666568889876654332211 1234699999999888666542 3 58899987
Q ss_pred CCceeEEEec------ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc----CCCCCcceEEEcCCCC
Q 001184 576 EGALKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE----GGLPSLPRLRFNKEGN 645 (1130)
Q Consensus 576 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~i~~v~~s~~~~ 645 (1130)
+++....... .....|.++...++|. |..|+.++-|..|+..++......... -....|.++...++|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7654432211 1223688888888876 556777788999987665432221111 0123578888888887
Q ss_pred EEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccc
Q 001184 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1130)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1130)
|.+|+.++-|..|+..++. +..+.. .+.
T Consensus 370 -lWiGt~~~Gl~~~~~~~~~--~~~~~~-----------------------~~~-------------------------- 397 (795)
T 4a2l_A 370 -LWIGTNDGGLNLYNPITQR--FTSYTL-----------------------QED-------------------------- 397 (795)
T ss_dssp -EEEEESSSCEEEECTTTCC--EEEECC-----------------------C----------------------------
T ss_pred -EEEEECCCCeEEEcCCCCc--EEEEec-----------------------CCC--------------------------
Confidence 4557777778888865441 000000 000
Q ss_pred cCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCc
Q 001184 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSG 805 (1130)
Q Consensus 726 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 805 (1130)
+ +...-....|.++...++|..|.+++.++-+..|+...+...
T Consensus 398 -------------~---------------------~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~--- 440 (795)
T 4a2l_A 398 -------------E---------------------SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE--- 440 (795)
T ss_dssp --------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE---
T ss_pred -------------C---------------------cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE---
Confidence 0 000002356788888888874666666666777764432110
Q ss_pred ccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeC------CCCCeEE
Q 001184 806 KATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS------PPPASTF 879 (1130)
Q Consensus 806 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~ 879 (1130)
.+.... .......|.++...++|.+.+... +.|.+||..+++....... ....|.+
T Consensus 441 ---------~~~~~~--------~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 502 (795)
T 4a2l_A 441 ---------NFNQRN--------SQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITT 502 (795)
T ss_dssp ---------EECTTT--------SCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEE
T ss_pred ---------EeecCC--------CCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEE
Confidence 000000 001345789999999998776655 5689999988765433211 2356899
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEe-------cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccc
Q 001184 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-------GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952 (1130)
Q Consensus 880 l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-------~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~ 952 (1130)
+...+ ++.+.+ |+. +-|..|+..+++. .+. .....|.++...++|...++.. . -|..||..+++..
T Consensus 503 i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 503 LFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK 575 (795)
T ss_dssp EEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE
T ss_pred EEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE
Confidence 99888 676665 444 4589999988776 332 1345789999999988666544 3 4888998764321
Q ss_pred ceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCC-CCCe--EEEEECCCCCEEEEEeC
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL-SSPI--SSAAYSCNSQLIYATFT 1029 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~~v--~~v~~s~dg~~l~t~~~ 1029 (1130)
......+-....+.++...++|.+.+++ ++.+..|+..+++.. .+....+. ...+ .++...++|.+++ |+.
T Consensus 576 ---~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~ 649 (795)
T 4a2l_A 576 ---RYNTTNGLPNNVVYGILEDSFGRLWLST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-GGI 649 (795)
T ss_dssp ---EECGGGTCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-EET
T ss_pred ---EeCCCCCCchhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-ecC
Confidence 1112222223568889999999877776 567888998876543 33332221 2233 5777888998665 555
Q ss_pred CCcEEEEeCC
Q 001184 1030 DGSIGVFDAD 1039 (1130)
Q Consensus 1030 Dg~i~vwd~~ 1039 (1130)
+|. ..++.+
T Consensus 650 ~Gl-~~~~p~ 658 (795)
T 4a2l_A 650 NGI-TTFRPE 658 (795)
T ss_dssp TEE-EEECGG
T ss_pred Cce-EEEcHH
Confidence 674 445543
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=3.4e-13 Score=166.32 Aligned_cols=248 Identities=9% Similarity=0.033 Sum_probs=173.4
Q ss_pred cCCCccEEEEEEcCCCCEEEEEeCCC-----eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc-
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAFTKH-----LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL- 479 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~~d~-----~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~- 479 (1130)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+.. ..+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~~--~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cccC--cccceEEEEeCCC--EEEEEEECCcc
Confidence 35656789999999999999876543 899999999875542 2222 2367899999999 5676666655
Q ss_pred ---------------EEEEe-cCCC----eeeEecCCCcCEEEEeecccCCccEEEEEec-----CCcEEEEEccC----
Q 001184 480 ---------------IRVWD-LSGR----KLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-----DGKIKAWLYDN---- 530 (1130)
Q Consensus 480 ---------------v~iwd-~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~vwd~~~---- 530 (1130)
|++|+ .++. .+.....|...+..+.|+ +++++|+..+. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS--DDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc--CCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999 4444 222223355567788775 56677777665 56899999986
Q ss_pred --Cc-ceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc--eeEEEecccC-ceeEEEEEcCCCCEEE
Q 001184 531 --VG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRK-KSAGVVQFDTTRNRIL 604 (1130)
Q Consensus 531 --~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~-~~v~~~~~~~~~~~l~ 604 (1130)
+. ....+..+...+.. .|+++|+.|+..+........|++||+.++. ..+.+..+.. ..+..++|++++.+++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 32 34444444444444 5889999988876433336789999998775 2345555444 3677788887777788
Q ss_pred EEeCCCc--EEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEe----CCCcEEEEEcCCC
Q 001184 605 AAGEDNQ--IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT----ADQGIKILANADG 664 (1130)
Q Consensus 605 ~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~----~dg~i~iw~~~~~ 664 (1130)
+...++. |++|++.+++.+..+..+ ...+..+.++|++..++... ..+.+..||+.++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 8888874 667787778777777655 33678889999987666442 3478999998776
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.58 E-value=6.7e-13 Score=147.37 Aligned_cols=272 Identities=11% Similarity=0.047 Sum_probs=183.3
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
..|.+++|+|++.. ++..+.++.++.|. ++... .+..+...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~-------------------~~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWL-------------------EISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEE-------------------EEESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeE-------------------EEeccCccccCcEECCCCCEEEEE
Confidence 35677888998874 66667788889992 33222 244566678999999999988888
Q ss_pred eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEecCCCeee-Eec--CCCcCE
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD----KLIRVWDLSGRKLF-QFE--GHEAPV 500 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d----~~v~iwd~~~~~~~-~~~--~h~~~v 500 (1130)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..+..+. .+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876332 1224667899999999998 67776666 68999994443333 332 344578
Q ss_pred EEEeecccCCccEEEEEec------CCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 501 YSVCPHQKENIHFIFSTAV------DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
.++++.+ ++.++++... .+.|..+|.+..... .+......+..++|+|+|+.++++.. .++.|++||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888865 5566666543 244555554433322 22222234788999999997766542 2678999998
Q ss_pred CC-CceeEEE-----e-cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCC----CCCcceEEEcCC
Q 001184 575 SE-GALKRTY-----I-GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG----LPSLPRLRFNKE 643 (1130)
Q Consensus 575 ~~-~~~~~~~-----~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~i~~v~~s~~ 643 (1130)
.+ +.....+ . .........++++++|+.+++...++.|.+||. .++.+..+..... ...+.+++|+|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 64 3333221 1 111125677999999998888778899999998 5666666654321 114789999999
Q ss_pred CCEEEEEeCCC
Q 001184 644 GNLLVVTTADQ 654 (1130)
Q Consensus 644 ~~~l~~~~~dg 654 (1130)
++.|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 87777666553
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=1.4e-12 Score=141.88 Aligned_cols=242 Identities=7% Similarity=-0.002 Sum_probs=173.8
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.+.....+++|+|+|+.+++++..++.|..||..++ .. .+..+...+.+++++|||+++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~--------------------~~~~~~~~~~~l~~~~dg~l~ 83 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS--------------------PEMHPSHHQNGHCLNKQGHLI 83 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE--------------------EEESSCSSEEEEEECTTCCEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE--------------------EEECCCCCcceeeECCCCcEE
Confidence 466778999999999877889999999999999877 32 233566789999999999988
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeec-CCCCeeEEEEecCCCceEEEEE----c-------------CCCcEEEEecC
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTC----G-------------DDKLIRVWDLS 486 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~-h~~~V~~i~~s~d~~~l~l~s~----s-------------~d~~v~iwd~~ 486 (1130)
++...++.|.+||..+++.........+ ....+.+++++|+|+ ++++. + ..+.|..++..
T Consensus 84 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 84 ACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC
Confidence 8877778999999988764321111111 123577899999998 67763 2 13456666644
Q ss_pred CCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccC-Ccc---eeeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGS---RVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~-~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
++ +..+..+......++|++ +++.+++.+.++.|.+|+++. +.. ...+......+..++++++|+.+++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 445556677788999854 556777778889999999973 322 12223334456789999999876665
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEE-cCCCCEEEEEeCCCcEEEEeCCCCce
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQF-DTTRNRILAAGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~ 622 (1130)
.+.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+..++..+.+.
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 5679999976 777777776544 778888 5888889888875 466667766554
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=6.3e-13 Score=148.62 Aligned_cols=221 Identities=11% Similarity=0.115 Sum_probs=150.6
Q ss_pred CceeEEEEecCCCEEEEEe-C---Ce--EEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeC------------
Q 001184 834 DVVPCVALSKNDSYVMSAG-G---GK--VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME------------ 895 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-d---g~--i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~------------ 895 (1130)
..+..++|||||+.|+..+ + +. |.+|++.+++.......+. +..++|+| +++.|+.++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE-DSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT-TSSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC-CCCEEEEEEccCCCcCCcEEEc
Confidence 4577899999999998876 2 33 8888999888766655443 99999999 7777777653
Q ss_pred ---------------CCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC-------cEEEEECCCCcccc
Q 001184 896 ---------------DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA-------QLIFWNTDTWEKRK 953 (1130)
Q Consensus 896 ---------------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg-------~i~vwd~~~~~~~~ 953 (1130)
...|++||+.+++.+..+.. . .+..++|+||| ++++++.++ ...||.+++++..
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~- 211 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE- 211 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-
Confidence 25799999998887555554 3 78999999999 877776552 3455555543321
Q ss_pred eeeEeccCCCCCCCeEEEEEcCCCcEEEE-EcC--------CcEEEEECCCceeeeeeecCCCCCCCeEE-EEECCCCCE
Q 001184 954 SIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHE--------TQLAIYDGSKMECIRQWVPQDVLSSPISS-AAYSCNSQL 1023 (1130)
Q Consensus 954 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d--------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~-v~~s~dg~~ 1023 (1130)
. +.. . ..+..+ +|||++|+. +.+ ..|.+|| +++.......+ ...+.. +.|+ || +
T Consensus 212 ~--l~~--~---~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~---~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 K--MFE--K---VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV---DRGVGQAKIKD-GK-V 275 (347)
T ss_dssp E--EEE--E---ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC---CSEEEEEEEET-TE-E
T ss_pred E--ecc--C---cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC---CcccCCccEEc-Cc-E
Confidence 1 111 1 223333 999998876 322 3688888 55544333222 567876 9999 98 9
Q ss_pred EEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcE-EEEeCC
Q 001184 1024 IYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSV-KVIEPS 1093 (1130)
Q Consensus 1024 l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v-~vW~~~ 1093 (1130)
+++++.++.+++| +.+++....+. + ...+..+.|+| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~----------~--~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAK----------G--RHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEEC----------S--SSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEec----------C--CCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 9999999999999 87665432221 1 12344577877 577777777765 788775
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=3.9e-12 Score=141.20 Aligned_cols=236 Identities=11% Similarity=0.034 Sum_probs=163.9
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.+...+.+++|+|+|+ +++++..++.|.+||..+++... +...+...+.+++|+|||+++
T Consensus 42 ~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~-------------------~~~~~~~~~~~i~~~~dg~l~ 101 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKR-------------------PFVSHKANPAAIKIHKDGRLF 101 (333)
T ss_dssp SSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE-------------------EEECSSSSEEEEEECTTSCEE
T ss_pred ccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEE-------------------EeeCCCCCcceEEECCCCcEE
Confidence 4677889999999998 78888889999999998877543 122456789999999999988
Q ss_pred EEEeCC----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcC------CCcEEEEecCCCeeeEec
Q 001184 425 GVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------DKLIRVWDLSGRKLFQFE 494 (1130)
Q Consensus 425 as~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~------d~~v~iwd~~~~~~~~~~ 494 (1130)
++...+ +.|.+||..++...... .-..+...+.+++++|+|+ ++++... .+.|..+|..+..+..+.
T Consensus 102 v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 102 VCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred EEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEEee
Confidence 887766 68999999887633211 1113456799999999998 5666553 356667774443344443
Q ss_pred CCCcCEEEEeecccCCccEE-EEEecCCcEEEEEccCC-cceee------ecCC-CccEEEEEEecCCCeEEEeeecCCC
Q 001184 495 GHEAPVYSVCPHQKENIHFI-FSTAVDGKIKAWLYDNV-GSRVD------YDAP-GLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~-~~~~~------~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
.+...+..++|++ ++..+ ++.+.++.|.+||++.. ..... .... ...+..++++++|+.+++...
T Consensus 179 ~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~---- 252 (333)
T 2dg1_A 179 QNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG---- 252 (333)
T ss_dssp EEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----
T ss_pred cCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC----
Confidence 3445578888854 55544 45566889999999642 22111 1111 136788999999997776643
Q ss_pred CcEEEEeeCCCCceeEEEecccCc-----eeEEEEEcCCCCEEEEEeCCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKK-----SAGVVQFDTTRNRILAAGEDN 610 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg 610 (1130)
++.|.+||. +++.+..+...... .+..++|+++++.|+.++.++
T Consensus 253 ~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 253 QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 678999998 56666666543221 477889999988887766654
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=2.8e-13 Score=149.43 Aligned_cols=244 Identities=12% Similarity=0.094 Sum_probs=176.7
Q ss_pred CceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE
Q 001184 834 DVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 912 (1130)
.....+++. ++++.++.. ++.|.+||..+++.+.++.. ......+++++ ++++.++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 445677774 344444444 79999999999999988863 46788999998 676555554899999999999998877
Q ss_pred EecCC-----CCeeEEEEccCCCeEEEEe--CCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc-
Q 001184 913 LKGHQ-----KHITGLAFSTNLNILVSSG--SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH- 984 (1130)
Q Consensus 913 l~~h~-----~~V~~l~~s~dg~~L~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~- 984 (1130)
+.... .....+++ ++..|..++ .++.|.+||+.+++....... + .....++++|+|++++++.
T Consensus 121 i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----g---~~p~~i~~~~dG~l~v~~~~ 191 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----G---IQPTSLVMDKYNKMWTITDG 191 (328)
T ss_dssp EECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----S---SCBCCCEECTTSEEEEEBCC
T ss_pred EEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----C---CCccceEEcCCCCEEEEECC
Confidence 76433 14567788 445555554 488999999998765433221 2 2346788999999877743
Q ss_pred C----------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccc
Q 001184 985 E----------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMS 1054 (1130)
Q Consensus 985 d----------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~ 1054 (1130)
+ +.|.++|..+++....+.... ......++|+||+++|+++.. .|.+||..+++...... .+
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~----~~ 263 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF----LE 263 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS----BC
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee----ec
Confidence 2 689999999999887765432 236789999999999988765 89999999888642111 11
Q ss_pred cCCCCCceeeeEEEEEcCCCCCEEEEE----eCCCcEEEEeCCCCccCCcccc
Q 001184 1055 QASPNSQTVFPLVVTSHPQEPNQLAVG----LTDGSVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~l~s~----~~Dg~v~vW~~~~~~~~w~~~~ 1103 (1130)
. ....+..++++|.++.++++. ..++.|.+||.. ++..|.+..
T Consensus 264 ~-----~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 264 F-----RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp C-----CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred C-----CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 0 113455688898778888887 778999999998 776666543
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=1.6e-11 Score=133.83 Aligned_cols=282 Identities=9% Similarity=-0.035 Sum_probs=193.9
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
+...+.+++++|+|+ ++++...++.|.+||.. ++.... ....+...+.+++++++|++++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 457899999999998 56665557899999988 554320 1123456799999999999888
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeE-ecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~-~~~h~~~v~~~~ 504 (1130)
+...++.|..||.. ++ ... ..+......+.++++.++|+ ++++...++.|..||.+++.... ...+...+..++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE
Confidence 87778899999976 33 221 12233456789999999998 77777778899999975554432 233456688888
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+. +++.+.++...++.|..||. ++.... ........+..++++++|+..++... .+.|..||. +++.....
T Consensus 148 ~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 148 LG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEFK 219 (299)
T ss_dssp EC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred Ec--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEEE
Confidence 75 45567776666789999998 443332 23333456889999999986665532 678999998 66644321
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
.......+..++++++|+.+++...++.|.+||. +++ +..+....+...+.++++ +++.+.++.. .+.+..++..+
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 2212236778999999986666657889999998 454 334433333346889999 8888666554 56677777654
Q ss_pred C
Q 001184 664 G 664 (1130)
Q Consensus 664 ~ 664 (1130)
+
T Consensus 296 ~ 296 (299)
T 2z2n_A 296 D 296 (299)
T ss_dssp -
T ss_pred c
Confidence 3
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=7.9e-13 Score=163.03 Aligned_cols=248 Identities=10% Similarity=-0.019 Sum_probs=169.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcC----eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
|...+..++|||||++++++.+.+| .|++||+.+|+.... .+.. ..+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~~--~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLER--VKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEEE--ECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cccC--cccceEEEEeCC
Confidence 4447889999999996444444333 899999999887541 1111 126679999999
Q ss_pred CEEEEEeCCCe----------------EEEEEecCCccce-eeeeeecCCCCeeEEEEecCCCceEEEEEcC-----CCc
Q 001184 422 NFIGVAFTKHL----------------IHLYTYQGSNDLC-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-----DKL 479 (1130)
Q Consensus 422 ~~las~~~d~~----------------i~vwd~~~~~~~~-~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~-----d~~ 479 (1130)
+.|+.++.++. |++|++.++.... .......|...+..++|+|||+. |+.++. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999988766 9999998875321 11122335666889999999995 444332 678
Q ss_pred EEEEe-cC------CC-eeeEecCCCcCEEEEeecccCCccEEEEEecC----CcEEEEEccCCcc--eeeecCCCc--c
Q 001184 480 IRVWD-LS------GR-KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGS--RVDYDAPGL--W 543 (1130)
Q Consensus 480 v~iwd-~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~--~~~~~~~~~--~ 543 (1130)
|++|| .+ +. ....+..+...+... |++ ++..|+..+.+ +.|.+||+.+... ...+..+.. .
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 99999 44 33 466677676666553 544 44555555443 3699999987642 233333333 6
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe----CCCcEEEEeCCC
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDN 619 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~ 619 (1130)
+..+.|++++.++++... ++...|++|++.+++.++.+..+ ...+..+.++|+++.++... ..+.|+.||+.+
T Consensus 338 ~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 888999877666666654 33457888998788877777765 44778889999987666432 357899999988
Q ss_pred Cc
Q 001184 620 VN 621 (1130)
Q Consensus 620 ~~ 621 (1130)
++
T Consensus 415 g~ 416 (710)
T 2xdw_A 415 EE 416 (710)
T ss_dssp SS
T ss_pred Cc
Confidence 77
No 190
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=2.5e-08 Score=124.16 Aligned_cols=595 Identities=12% Similarity=0.108 Sum_probs=335.5
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...|+++.-.++|. |=.|+.+| +..||-.+ |+.+.... .... ...-....|.++.-.++|+.|-+
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~-~~~~---~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEE-QSSS---VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCS-SCSS---SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCC-CCCc---cccccccccceEEEcCCCCEEEE
Confidence 45899999999995 45566666 66677432 22221100 0000 00011346999999999984555
Q ss_pred EeCCCeEEEEEecCCccceeeee-eec---CCCCeeEEEEec--CCCceEEEEEcCCCcEEEEecCCCeeeEecC-----
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLE-IDA---HVGGVNDLAFSY--PNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG----- 495 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~-~~~---h~~~V~~i~~s~--d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~----- 495 (1130)
|+.++-+..||..+++....... ... ....|.++.... ++. +..++.++.+..+|........+..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77774599999887542211000 000 123588888877 665 3445445568889944444444421
Q ss_pred -CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeee-------cCCCccEEEEEEecCCCeEEEeeecCCCCc
Q 001184 496 -HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-------DAPGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1130)
Q Consensus 496 -h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1130)
....|.++.... ++ .|..++.++.+..||..+....... ......|.++...++|++.+.. .+
T Consensus 160 l~~~~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt------~~ 230 (781)
T 3v9f_A 160 LPSEQTWTATEAE--DG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT------SK 230 (781)
T ss_dssp CSCCCEEEEEEEE--TT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEE------TT
T ss_pred CCccceEEEEECC--CC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe------CC
Confidence 134577776532 33 4566777767888887665432211 0123468899988888876654 23
Q ss_pred EEEEeeCCCCceeEEEec------ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-------cc-----
Q 001184 568 HLVEWNESEGALKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE-------AE----- 629 (1130)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~----- 629 (1130)
-|.+||..+++....... .....|.++...++|. |..|+..+-|.++|..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 689999877654332211 1233578888777664 5666665678999988765432221 10
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCC
Q 001184 630 GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRS 709 (1130)
Q Consensus 630 ~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 709 (1130)
-....|.++...++|. |-+|+.++-|..++..... +..+.. .+.
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~-----------------------~~~---------- 353 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSY-----------------------SPT---------- 353 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC-------------------------------------
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeecc-----------------------Ccc----------
Confidence 1123578888888886 5557767777777754431 100000 000
Q ss_pred CCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCC
Q 001184 710 SPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNG 789 (1130)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 789 (1130)
. . .........|.++...++|. |.+++.++
T Consensus 354 -----------------------------~--------~------------~~~~l~~~~v~~i~~d~~g~-lWigt~~~ 383 (781)
T 3v9f_A 354 -----------------------------Q--------M------------NESSLSNKVVSSVCDDGQGK-LWIGTDGG 383 (781)
T ss_dssp -----------------------------C--------C------------CSSCCSSSCEEEEEECTTSC-EEEEEBSS
T ss_pred -----------------------------c--------c------------ccCCCCCcceEEEEEcCCCC-EEEEeCCC
Confidence 0 0 00001234577788777776 44555555
Q ss_pred eEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEE
Q 001184 790 VQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT 869 (1130)
Q Consensus 790 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~ 869 (1130)
-+..|+...... ..+... .......|.+++..++|.+.+...++.|..+|..+++....
T Consensus 384 Gl~~~~~~~~~~------------~~~~~~---------~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 442 (781)
T 3v9f_A 384 GINVFENGKRVA------------IYNKEN---------RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQII 442 (781)
T ss_dssp CEEEEETTEEEE------------ECC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEEC
T ss_pred cEEEEECCCCeE------------EEccCC---------CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEe
Confidence 566665332110 000000 01235678999999888877754467899999887765432
Q ss_pred Ee--CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecC-----CCCeeEEEEccCCCeEEEEeCCCcEE
Q 001184 870 FM--SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH-----QKHITGLAFSTNLNILVSSGSDAQLI 942 (1130)
Q Consensus 870 ~~--~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~L~s~s~Dg~i~ 942 (1130)
.. .....|.++...+ ++.+.+ |+. +-|..|+..+++........ ...|.++...++|...+....+| |.
T Consensus 443 ~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~ 518 (781)
T 3v9f_A 443 ELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VG 518 (781)
T ss_dssp CSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EE
T ss_pred ccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EE
Confidence 21 2346788888887 666554 555 45889998876543332222 35789999998887666443345 77
Q ss_pred EEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCC-CCCCeEEEEECCCC
Q 001184 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV-LSSPISSAAYSCNS 1021 (1130)
Q Consensus 943 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~v~~v~~s~dg 1021 (1130)
.||..+++... .....+-....|.++...++|.+.+++.+|-+..||..+++.. .+....+ ....|.++...++|
T Consensus 519 ~~~~~~~~~~~---~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g 594 (781)
T 3v9f_A 519 IYTPDMQLVRK---FNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNG 594 (781)
T ss_dssp EECTTCCEEEE---ECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSS
T ss_pred EEeCCCCeEEE---ccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCC
Confidence 78877643211 1111222235788999999999888776443388998776532 2322211 13468899999999
Q ss_pred CEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCC
Q 001184 1022 QLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSET 1095 (1130)
Q Consensus 1022 ~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~ 1095 (1130)
.+.++ +.+| |..|+..+++.. .+....-+ .......-++...+ ++ .|..|+.+| +..++...-
T Consensus 595 ~lW~~-t~~G-l~~~~~~~~~~~-~~~~~dGl-----~~~~f~~~~~~~~~-~G-~l~~g~~~G-l~~f~p~~~ 657 (781)
T 3v9f_A 595 NIWAS-TNTG-ISCYITSKKCFY-TYDHSNNI-----PQGSFISGCVTKDH-NG-LIYFGSING-LCFFNPDIA 657 (781)
T ss_dssp CEEEE-CSSC-EEEEETTTTEEE-EECGGGTC-----CSSCEEEEEEEECT-TS-CEEEEETTE-EEEECSCCG
T ss_pred CEEEE-cCCc-eEEEECCCCceE-EecccCCc-----cccccccCceEECC-CC-EEEEECCCc-eEEEChhhc
Confidence 86665 4455 777888765532 22111100 11111122333333 45 466677788 667887643
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=1.9e-12 Score=138.02 Aligned_cols=243 Identities=12% Similarity=0.070 Sum_probs=179.3
Q ss_pred EEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCC-ccEEEEEEcCCCCEEEEEeCCCeEEEEEecC
Q 001184 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSS-ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG 440 (1130)
Q Consensus 362 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~las~~~d~~i~vwd~~~ 440 (1130)
+|++++.++.|.+||.++|+.+.. +..+. ..+.+++++|||++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 689999999999999999998652 23333 4688999999999998 34778999999 7
Q ss_pred CccceeeeeeecC-CCCeeEEEEecCCCceEEEEEcC-CCcEEEEecCCCeeeEecC------CCcCEEEEeecccCCcc
Q 001184 441 SNDLCQSLEIDAH-VGGVNDLAFSYPNKQLCIVTCGD-DKLIRVWDLSGRKLFQFEG------HEAPVYSVCPHQKENIH 512 (1130)
Q Consensus 441 ~~~~~~~~~~~~h-~~~V~~i~~s~d~~~l~l~s~s~-d~~v~iwd~~~~~~~~~~~------h~~~v~~~~~~~~~~~~ 512 (1130)
|+.+.. +..+ ...+.++.+.+||+ ++++.+. ++.|..+|.+|+.+..+.. +......+++ .++++
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~ 137 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK--NKKGN 137 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE--CTTSC
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE--CCCCC
Confidence 775553 4433 34688999999999 7777776 7888888888988877652 1123333333 56778
Q ss_pred EEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC----
Q 001184 513 FIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK---- 588 (1130)
Q Consensus 513 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---- 588 (1130)
++++...++.|..||.+ ++....+.... .+.++.+.++|+.++++.. .+.|..+|..+|+.+..+.....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 99999999999999998 77777776543 4556788899999988764 66899999999999998874321
Q ss_pred -ceeEEEEEcCCCCEEEEEeCC--------CcEEEEeC-CCCceeEEEeccCCCCCcceEE
Q 001184 589 -KSAGVVQFDTTRNRILAAGED--------NQIKFWDM-DNVNMLTSTEAEGGLPSLPRLR 639 (1130)
Q Consensus 589 -~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~-~~~~~~~~~~~~~~~~~i~~v~ 639 (1130)
..+..+...++|+.+++.... +..+++.+ .+++.+..+........+..++
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136678888999888776421 13345555 4778887777666655666653
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=4.7e-13 Score=164.50 Aligned_cols=247 Identities=11% Similarity=-0.038 Sum_probs=163.4
Q ss_pred cCCCccEEEEEEcCCCCEEEEE-----eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc-
Q 001184 406 KDSSISVSRVAWSPDGNFIGVA-----FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL- 479 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~-----~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~- 479 (1130)
.+|...+.+++|||||++||.+ +.+.+|++||+.+++.+.. ..+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 3667789999999999999944 4457899999999875411 012111 126899999999 6777777665
Q ss_pred ------------EEEEe-cCCC----eeeEecCCCcCEEEEeecccCCccEEEEEecCC----cEEEEEccCCcceeeec
Q 001184 480 ------------IRVWD-LSGR----KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG----KIKAWLYDNVGSRVDYD 538 (1130)
Q Consensus 480 ------------v~iwd-~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~ 538 (1130)
|++|+ .++. .+.....|...+.++.|++ +|++|+.++.++ .|.+|+..++. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 99999 5444 3333445566788888854 557777776655 56666544333 33333
Q ss_pred CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce--eEEEeccc-CceeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001184 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFW 615 (1130)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vw 615 (1130)
.+...+....+ ++|. ++..+.....++.|++||+.++.. ...+..+. ...+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 34444455555 6777 655543222468999999987753 23444333 4467778887 66778888889988887
Q ss_pred eCC-CCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC----CCcEEEEEcCCC
Q 001184 616 DMD-NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA----DQGIKILANADG 664 (1130)
Q Consensus 616 d~~-~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~ 664 (1130)
.+. .++....+..+. ...+..++++|++..++.... .+.|++||+.++
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 654 355555554432 235677889999887774433 468999998776
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=2.3e-13 Score=167.33 Aligned_cols=249 Identities=10% Similarity=-0.073 Sum_probs=162.1
Q ss_pred CCCCEEEEEEecCCCeEEEEEe----CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGC----GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
|...+.+++|||||++++++.+ .+..|++||+.+|+.+... .+... ....++|||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-----------------~~~~~--~~~~~~wspDg 179 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-----------------VIEGG--KYATPKWTPDS 179 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-----------------CBSCC--TTCCCEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-----------------ccCcc--cccceEEecCC
Confidence 5567999999999997544433 3467999999998865100 01111 12579999999
Q ss_pred CEEEEEeCCCe-------------EEEEEecCCccc-eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC----cEEEE
Q 001184 422 NFIGVAFTKHL-------------IHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK----LIRVW 483 (1130)
Q Consensus 422 ~~las~~~d~~-------------i~vwd~~~~~~~-~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~----~v~iw 483 (1130)
+.|+.++.|.. |++|++.++... ........|...+..++|+|||+. |+.++.++ .|.+|
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYWK 257 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEEE
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEEE
Confidence 99999988776 999999887632 122233446678999999999995 45444444 67777
Q ss_pred ecCCCeeeEecCCCcCEEEEeecccCCccEEEEEe---cCCcEEEEEccCCcc---eeeecCC-CccEEEEEEecCCCeE
Q 001184 484 DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA---VDGKIKAWLYDNVGS---RVDYDAP-GLWCTTMLYSADGSRL 556 (1130)
Q Consensus 484 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~---~~~~~~~-~~~v~~~~~s~~~~~l 556 (1130)
|..+.....+..+...+....+ + ++.+++... .++.|.+||+++... ...+..+ ...+..++++ ++..+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 258 RPGEKDFRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp CTTCSSCEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred cCCCCceEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 7433345556556666666555 2 334444443 257899999987653 2233322 4467888888 56666
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe----CCCcEEEEeCCCCce
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVNM 622 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~ 622 (1130)
++... ++...|++++.. ++..+.+..+....+..+.++|+++.++... ..+.|++||+.+++.
T Consensus 334 ~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 334 LEYLK--DATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEE--TTEEEEEEEETT-CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEE--CCEEEEEEEeCC-CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66554 223445555543 5555555544344677788899988776433 347899999998874
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=1.9e-12 Score=140.86 Aligned_cols=238 Identities=12% Similarity=0.056 Sum_probs=166.1
Q ss_pred ecCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001184 405 VKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1130)
Q Consensus 405 ~~~h~~~V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iw 483 (1130)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445566788999999998 7788888999999999886 33 3456777899999999999 77777778999999
Q ss_pred e-cCCCeeeEecCC----CcCEEEEeecccCCccEEEEEecC---------------CcEEEEEccCCcceeeecCCCcc
Q 001184 484 D-LSGRKLFQFEGH----EAPVYSVCPHQKENIHFIFSTAVD---------------GKIKAWLYDNVGSRVDYDAPGLW 543 (1130)
Q Consensus 484 d-~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~s~d---------------g~i~vwd~~~~~~~~~~~~~~~~ 543 (1130)
| .+++........ ...+..+++. ++|.++++.+.. +.-.+|.++.......+......
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~ 173 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVK 173 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSS
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCC
Confidence 9 577754433221 1245567775 466777773211 11244444433444444445556
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCC-CCce---eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGAL---KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
...++|+|+|+.+++.. .++.|++|++. ++.. ...+ ......+..++++++|+.+++. ++.|.+||..
T Consensus 174 ~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~- 245 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD- 245 (296)
T ss_dssp EEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred CccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence 78999999999984443 26799999986 5554 3344 2233345679999999866655 7899999986
Q ss_pred CceeEEEeccCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCC
Q 001184 620 VNMLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~-s~~~~~l~~~~~dg~i~iw~~~~ 663 (1130)
++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+
T Consensus 246 g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 246 GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 777777765543 788999 58999999988764 33334433
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=1.7e-11 Score=136.73 Aligned_cols=201 Identities=11% Similarity=0.034 Sum_probs=142.7
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEECCCceeEEE-EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEE
Q 001184 837 PCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 912 (1130)
..++++|||++|+++. ++.|.++| .+++.+.. +.... ++.+.|.+.+.+++.+.||.+.+++. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4689999999998875 36799999 99998887 65322 24556645567777888999999999 8876643
Q ss_pred Ee-----cCCCCe-eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEecc------CCCCCCCeEEEEEcCCCcEE
Q 001184 913 LK-----GHQKHI-TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP------AGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 913 l~-----~h~~~V-~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d~~~l 980 (1130)
.. ....++ ....+.+++..++..+..+.+.+.|+.+............ ....+.....++++||+..+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 22 111222 3356777776666556788999999976432211111111 11112344558899999988
Q ss_pred EEEc-----------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCccccccc
Q 001184 981 LVNH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 981 ~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
.+.. .+.|.++|..+++.+..+... ....+++|+|||+ +++++. .++.|.|||..+++.+..+
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 8742 257999999999999988654 3688999999999 777777 4899999999999988773
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.53 E-value=1.5e-12 Score=138.87 Aligned_cols=251 Identities=10% Similarity=0.022 Sum_probs=184.8
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCC-CCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCC-CCe
Q 001184 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ-KHI 920 (1130)
Q Consensus 844 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V 920 (1130)
.+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++++ +.++.|+.||. +++.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456777777 8999999999999999998766 5789999999 888888 45778999999 899998888753 578
Q ss_pred eEEEEccCCCeEEEEeC-CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCcee
Q 001184 921 TGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMEC 998 (1130)
Q Consensus 921 ~~l~~s~dg~~L~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~ 998 (1130)
.++.+.+||+++++.+. ++.|..+|. .++....................+++.++|.++++. .++.|..||.. |+.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 89999999999999887 777777776 444333332211100111234456789999999885 58999999998 999
Q ss_pred eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEE
Q 001184 999 IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQL 1078 (1130)
Q Consensus 999 ~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1078 (1130)
+..+... ....++.+.++|.++++++.+++|..+|..+|+.+.++..... + ......+..+...+ +++++
T Consensus 158 ~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~----~~~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 158 LNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-E----GVQLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp EEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-B----SCCCSEEEEEEECT-TSCEE
T ss_pred EEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-C----CccccccccceEcC-CCCEE
Confidence 8888764 3456788899999999998888999999999999877752210 0 01123345566666 57777
Q ss_pred EEEeCC--------CcEEEEeC-CCCccCCcccccCCCCCC
Q 001184 1079 AVGLTD--------GSVKVIEP-SETERKWGVAVPVDNGTD 1110 (1130)
Q Consensus 1079 ~s~~~D--------g~v~vW~~-~~~~~~w~~~~p~~~~~~ 1110 (1130)
++.+.. +..++..+ .+++..|......+=|.+
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~ 268 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMI 268 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCC
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccccce
Confidence 776421 23456666 577778998888877777
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=2.2e-12 Score=138.34 Aligned_cols=239 Identities=9% Similarity=-0.040 Sum_probs=165.4
Q ss_pred CEEEEEEecCCCeEEE-EEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 349 SVVSMDFHPFHHTLLV-VGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 349 ~V~~v~fspdg~~lla-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
...+++++|+|+ +++ +.+.++.|.+||..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 889999999997 666 54678899999976654321 111233467889999999966666
Q ss_pred eCCCeEEEEEecCCccceeeeeee-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEee
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCP 505 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~ 505 (1130)
. ++.|.+||..+..... +. .....+.++++.++|+ ++++...++.|.+|+ .+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987654221 22 2335689999999998 777777788999998 433333222233345677887
Q ss_pred cccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEec
Q 001184 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1130)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1130)
.+ ++.++++...++.|.+||.+..............+..++++++|+.+++... ++.|.+|+..+..... ...
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEE-CCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCccee-ecc
Confidence 54 5567777777889999998765544332233356889999999966665532 6789999986654332 221
Q ss_pred ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 621 (1130)
.....+..++++++|+.+++...++.|+++++...+
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 122357889999999988888889999999987654
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=4.9e-12 Score=138.21 Aligned_cols=205 Identities=13% Similarity=0.119 Sum_probs=143.6
Q ss_pred eeEEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec-CeEEE
Q 001184 836 VPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DEVKT 911 (1130)
Q Consensus 836 i~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~ 911 (1130)
...++|+|||+++.++. ++.|.++|+.+++.+.++.... + ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 34689999999888775 4789999999999999986432 1 223333 566777888899998888876 56543
Q ss_pred EEecCC----CCee-EEEEc-cCCCeEEEEeCCCcEEEEECCCCcccceeeEe------ccCCCCCCCeEEEEEcCCCcE
Q 001184 912 KLKGHQ----KHIT-GLAFS-TNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ------LPAGKLPVGETRVQFHSDQVR 979 (1130)
Q Consensus 912 ~l~~h~----~~V~-~l~~s-~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~d~~~ 979 (1130)
....+. .++. ..+|. ++|++++ .+.+|.|.+.|+.+.......... ...+-.+.....+++++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ 293 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 293 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCe
Confidence 222121 2222 24664 6775544 666899999999775432111111 011112234456788999998
Q ss_pred EEEEc-----------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCcccccc
Q 001184 980 LLVNH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCR 1046 (1130)
Q Consensus 980 l~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~ 1046 (1130)
+++.. .++|.++|+.+++.++.+... .++++++|++|++ +|+++. .++.|.|+|..+++.+..
T Consensus 294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 88742 257999999999999998765 4788999999997 677655 489999999999999888
Q ss_pred cCC
Q 001184 1047 IAP 1049 (1130)
Q Consensus 1047 ~~~ 1049 (1130)
+..
T Consensus 370 i~~ 372 (386)
T 3sjl_D 370 VNQ 372 (386)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.51 E-value=3.1e-12 Score=140.98 Aligned_cols=270 Identities=12% Similarity=0.005 Sum_probs=183.7
Q ss_pred CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceee
Q 001184 368 GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS 447 (1130)
Q Consensus 368 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~ 447 (1130)
.+++|.+||.++++........ .. -.........+++. +++.+++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~----~n---------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYR----AN---------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHH----HH---------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhhHhh----hc---------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 3789999999999876421000 00 01122346777774 455556666689999999999886553
Q ss_pred eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCC-----cCEEEEeecccCCccEEEEEe-cC
Q 001184 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE-----APVYSVCPHQKENIHFIFSTA-VD 520 (1130)
Q Consensus 448 ~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s-~d 520 (1130)
+. .......++++++++ +.++...++.|.+|| .+++....+.... .....+++ .++.++++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~---~~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ---YGKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE---ETTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE---ECCEEEEEcCCCC
Confidence 33 345689999999985 566666899999999 6777666665332 14455665 2334444443 48
Q ss_pred CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCC------CcEEEEeeCCCCceeEEEecccCceeEEE
Q 001184 521 GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG------DSHLVEWNESEGALKRTYIGFRKKSAGVV 594 (1130)
Q Consensus 521 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 594 (1130)
+.|.+||..+.+....+... .....++++|+|++++++....+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 99999999988766665543 335688999999977766421000 27899999999988877764333357889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC-CCCEEEEE----eCCCcEEEEEcCCC
Q 001184 595 QFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLVVT----TADQGIKILANADG 664 (1130)
Q Consensus 595 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~-~~~~l~~~----~~dg~i~iw~~~~~ 664 (1130)
+++|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+|+.. +
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g 302 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G 302 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C
Confidence 99999999988765 89999998887542111111123578899999 55555555 568899999987 5
No 200
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=1.8e-08 Score=125.38 Aligned_cols=539 Identities=11% Similarity=0.043 Sum_probs=309.8
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC--CCCEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGNFIG 425 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~la 425 (1130)
..|.++...++|+. |-.|+.++-+..||..+++...- ..... . ...-....|.++...+ +|...+
T Consensus 66 n~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~~------~~~~~----~--~~~l~~~~i~~i~~d~~~~g~lwi 132 (781)
T 3v9f_A 66 NELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSVY------QYNPE----D--PQSLITNDVTHITSSVQAGKGLWV 132 (781)
T ss_dssp SCEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEEE------CCCTT----C--SSSCSCSCEEEEEECSSTTSEEEE
T ss_pred cccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEee------ccccC----C--CCCcccCcceEEEecCccCCCEEE
Confidence 46999999998862 34466675799999987664321 00000 0 0001123688998888 776544
Q ss_pred EEeCCCeEEEEEecCCccceeeee--ee-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecC-------
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLE--ID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG------- 495 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~--~~-~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~------- 495 (1130)
++.++-|..||..+++... ... .. -....|.++...++|. |..+..++-+..||........+..
T Consensus 133 -~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 207 (781)
T 3v9f_A 133 -CTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS 207 (781)
T ss_dssp -EESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred -EECCCCeeEEECCCCeEEe-eccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence 5534458889987654221 100 00 1134588888888876 3445555568889944443333321
Q ss_pred -CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec-------CCCccEEEEEEecCCCeEEEeeecCCCCc
Q 001184 496 -HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-------APGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1130)
Q Consensus 496 -h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1130)
....|.++... .++. |..++.+ .+.+||..+........ .....|.++...++|...+... .+
T Consensus 208 l~~~~i~~i~~d--~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~~ 278 (781)
T 3v9f_A 208 LPGNDVRCIYKD--TNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE-----LN 278 (781)
T ss_dssp -CCSSEEEEEEC--TTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES-----SS
T ss_pred CCCCceeEEEEc--CCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC-----CC
Confidence 13467777653 3444 4455555 68888876543322111 1234689999888887665432 35
Q ss_pred EEEEeeCCCCceeEEEe-------------cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEe-------
Q 001184 568 HLVEWNESEGALKRTYI-------------GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE------- 627 (1130)
Q Consensus 568 ~i~~wd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------- 627 (1130)
-|.++|..++....... +.....|.++....+|. |..|+.++-|..++..+........
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 357 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE 357 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc
Confidence 68889987665432211 11233688888888775 5667777789999987655333211
Q ss_pred ccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccC
Q 001184 628 AEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVD 707 (1130)
Q Consensus 628 ~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 707 (1130)
..-....|.++...++|. |.+|+.++-|..|+..++. ...+. +.
T Consensus 358 ~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~-------------------------~~-------- 401 (781)
T 3v9f_A 358 SSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRV--AIYNK-------------------------EN-------- 401 (781)
T ss_dssp SCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEE--EECC------------------------------------
T ss_pred CCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCe--EEEcc-------------------------CC--------
Confidence 011223578888888776 4556666668888764431 00000 00
Q ss_pred CCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee
Q 001184 708 RSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS 787 (1130)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 787 (1130)
. ......|.++...++|... +++.
T Consensus 402 -------------------------------~------------------------~~~~~~v~~i~~d~~g~lW-igt~ 425 (781)
T 3v9f_A 402 -------------------------------R------------------------ELLSNSVLCSLKDSEGNLW-FGTY 425 (781)
T ss_dssp ---------------------------------------------------------CCCSBEEEEEECTTSCEE-EEET
T ss_pred -------------------------------C------------------------CCCCcceEEEEECCCCCEE-EEec
Confidence 0 0023457777777777644 4554
Q ss_pred CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeE
Q 001184 788 NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVM 867 (1130)
Q Consensus 788 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~ 867 (1130)
++-+..++... +..............|.+++..++|.+.+... +.|..||..+++..
T Consensus 426 ~~Gl~~~~~~~----------------------~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 426 LGNISYYNTRL----------------------KKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp TEEEEEECSSS----------------------CEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC
T ss_pred cCCEEEEcCCC----------------------CcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE
Confidence 45565554322 11111000011356788999988887666544 67999998876654
Q ss_pred EEEeCC-----CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEec----CCCCeeEEEEccCCCeEEEEeCC
Q 001184 868 TTFMSP-----PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG----HQKHITGLAFSTNLNILVSSGSD 938 (1130)
Q Consensus 868 ~~~~~~-----~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~----h~~~V~~l~~s~dg~~L~s~s~D 938 (1130)
...... ...|.++...+ ++.+.+ |+.++-|..|+..+++.. .+.. ....|.++...++|...++.. +
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~ 558 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-E 558 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-T
T ss_pred ecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-C
Confidence 433222 35689999888 676654 555444778887766543 3321 235688999988887666544 6
Q ss_pred CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCC-C--CeEEE
Q 001184 939 AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLS-S--PISSA 1015 (1130)
Q Consensus 939 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~--~v~~v 1015 (1130)
|.+..||..+++.. ......+-....+.++...++|.+.+++. +.+..|+..+++. ..+....+.. . ...++
T Consensus 559 Glv~~~d~~~~~~~---~~~~~~gl~~~~i~~i~~d~~g~lW~~t~-~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~ 633 (781)
T 3v9f_A 559 GLVCFPSARNFDYQ---VFQRKEGLPNTHIRAISEDKNGNIWASTN-TGISCYITSKKCF-YTYDHSNNIPQGSFISGCV 633 (781)
T ss_dssp EEEEESCTTTCCCE---EECGGGTCSCCCCCEEEECSSSCEEEECS-SCEEEEETTTTEE-EEECGGGTCCSSCEEEEEE
T ss_pred CceEEECCCCCcEE---EccccCCCCCceEEEEEECCCCCEEEEcC-CceEEEECCCCce-EEecccCCccccccccCce
Confidence 65488888765421 11112222224678899999998777654 4588888876654 3332221111 1 23577
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1016 AYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 1016 ~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
...+||.+++ |+.+| +..++...
T Consensus 634 ~~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 634 TKDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp EECTTSCEEE-EETTE-EEEECSCC
T ss_pred EECCCCEEEE-ECCCc-eEEEChhh
Confidence 7788998666 55577 45566543
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=9.4e-11 Score=127.66 Aligned_cols=279 Identities=10% Similarity=-0.026 Sum_probs=191.3
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
....+.+++++++|+ +.++...++.|.+||.. ++.... .+..+...+.+++++++|++++
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF------------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE------------------ECCCCCCcceeEEECCCCCEEE
Confidence 456899999999998 56666678899999987 554320 1223346789999999999888
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeE-ecCCCcCEEEEe
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVC 504 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~-~~~h~~~v~~~~ 504 (1130)
+...++.|..||.. ++.. ...+......+.++++.++|+ ++++...++.|..+|..++.... +......+..++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~--~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFT--EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EETTTTEEEEECTT-SCEE--EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEE
T ss_pred EecCCCeEEEECCC-CCeE--EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEE
Confidence 77778889999987 5432 122333446789999999998 67777778899999955665432 333456678888
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+.+ ++.+.++...++.|..||. .+.... ........+..++++++|+..++... .+.|.+||. +++.....
T Consensus 153 ~d~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 153 LGS--DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEYD 224 (300)
T ss_dssp ECT--TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred ECC--CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEEE
Confidence 754 5566666666788999988 333222 22233456889999999976666532 568999998 55544332
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~ 661 (1130)
.......+..++++++|+.+++...++.|..||. +++.. .+........+.+++++++|.+.++.. . .|..++.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2212335778999999986666666789999998 45433 333332334678999999998655544 4 6666654
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.49 E-value=1.4e-10 Score=126.30 Aligned_cols=240 Identities=10% Similarity=0.049 Sum_probs=170.6
Q ss_pred cCCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEec
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~ 485 (1130)
..+...+.+++++++|+.+++...++.|.+||.. ++ +.. .....+...+.++++.++|. +.++...++.|..||.
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITE-YPLPTPDAKVMCLTISSDGE--VWFTENAANKIGRITK 85 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEE-ecCCcccCceeeEEECCCCC--EEEeCCCCCeEEEECC
Confidence 3455689999999999988877668899999988 54 221 12233456799999999998 6777777889999995
Q ss_pred CCCeeeEec--CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce-eeecCCCccEEEEEEecCCCeEEEeeec
Q 001184 486 SGRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 486 ~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
+++. ..+. .....+..+++. +++.++++...++.|..||. ++... .........+..+++.++|+.+++...
T Consensus 86 ~g~~-~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~- 160 (299)
T 2z2n_A 86 KGII-KEYTLPNPDSAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ- 160 (299)
T ss_dssp TSCE-EEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT-
T ss_pred CCcE-EEEeCCCcCCCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC-
Confidence 5543 3332 345578888885 45567777777889999988 33322 223334456899999999987776532
Q ss_pred CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
.+.|..||. +++............+..++++++++.+++...++.|.+||. +++... +........+.++++++
T Consensus 161 ---~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 161 ---NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGA 234 (299)
T ss_dssp ---TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECS
T ss_pred ---CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECC
Confidence 678999998 666554322222335778999999987776667889999999 666433 33333334688999999
Q ss_pred CCCEEEEEeCCCcEEEEEc
Q 001184 643 EGNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~ 661 (1130)
+|++.++...++.|..|+.
T Consensus 235 ~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTCEEEEETTTTEEEEEET
T ss_pred CCCEEEeccCCceEEEECC
Confidence 9986666657788999986
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=3.2e-11 Score=131.76 Aligned_cols=313 Identities=9% Similarity=-0.039 Sum_probs=198.3
Q ss_pred cccCCccEEEEEec-----CCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeec------CCCCcEEEEeeC
Q 001184 506 HQKENIHFIFSTAV-----DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNE 574 (1130)
Q Consensus 506 ~~~~~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~ 574 (1130)
.|.+++..++.... ++.|.+.|..+.+....+.....+ . ++++|||++++++... +..++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34567777777765 679999999998887777655555 4 9999999999887520 012567999999
Q ss_pred CCCceeEEEeccc------CceeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCE
Q 001184 575 SEGALKRTYIGFR------KKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1130)
Q Consensus 575 ~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~ 646 (1130)
.+++.+..+.-.. ......+.|+|||++++++.. ++.|.++|+.+++.+.++...+ ....+....+.
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-----~~~~~P~g~~~ 191 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----CYHIFPTAPDT 191 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----EEEEEEEETTE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-----cceeecCCCce
Confidence 9999988875321 113445889999999998864 6899999999999999886543 12233334567
Q ss_pred EEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCcccc
Q 001184 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAAR 726 (1130)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1130)
+++.+.||.+.+.++.+..+... ... . .+.++
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~---~~~-~-----------------~~~~~--------------------------- 223 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEI---THT-E-----------------VFHPE--------------------------- 223 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEE---EEC-C-----------------CCSCT---------------------------
T ss_pred eEEECCCCCEEEEECCCCCeEEE---eec-c-----------------eeccc---------------------------
Confidence 77888899998888865211100 000 0 00000
Q ss_pred CCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEe-ccCCeEEEeeeCCeEEeeecCCCCCCCCc
Q 001184 727 GIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT-NSGIGILALWSNGVQKLWKWNRTEQNPSG 805 (1130)
Q Consensus 727 ~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 805 (1130)
.........|. ++|+.++ .+.+|.+.+.|+.........
T Consensus 224 ---------------------------------------~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~ 263 (386)
T 3sjl_D 224 ---------------------------------------DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLP 263 (386)
T ss_dssp ---------------------------------------TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECC
T ss_pred ---------------------------------------cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeec
Confidence 00000011333 4554333 445678877776443211110
Q ss_pred ccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-----------CCeEEEEECCCceeEEEEeCCC
Q 001184 806 KATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-----------GGKVSLFNMMNFKVMTTFMSPP 874 (1130)
Q Consensus 806 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-----------dg~i~iwd~~~~~~~~~~~~~~ 874 (1130)
-|++.+...+. .+-.......++++++++.+.+.. .++|.+.|+.+++.++++...
T Consensus 264 ---------~~~~~~~~~~~---~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg- 330 (386)
T 3sjl_D 264 ---------AVEALTEAERA---DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG- 330 (386)
T ss_dssp ---------CEESSCHHHHH---TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-
T ss_pred ---------ceecccccccc---ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-
Confidence 01100000000 000112233577899999888763 146999999999999988743
Q ss_pred CCeEEEEEeCCCCc-EEEEE-eCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccC
Q 001184 875 PASTFLAFHPQDNN-IIAIG-MEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN 928 (1130)
Q Consensus 875 ~~i~~l~~sp~~~~-~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 928 (1130)
..+..+++++ |++ +|+++ ..++.|.++|..+++.+.++..- +.-..|.+++|
T Consensus 331 ~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 331 HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 3678999999 554 66665 45899999999999999888643 22345666665
No 204
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.46 E-value=1.1e-11 Score=132.70 Aligned_cols=239 Identities=8% Similarity=-0.073 Sum_probs=166.6
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCe
Q 001184 411 SVSRVAWSPDGNFIG-VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK 489 (1130)
Q Consensus 411 ~V~~v~~spdg~~la-s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~ 489 (1130)
...+++++++|++++ +.+.++.|.+||..++.... ....+...+.++++.++|+ ++++.. ++.|.+||..+..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 678999999999777 54678899999986654221 1123345688999999998 666666 8899999966655
Q ss_pred eeEecC-CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcE
Q 001184 490 LFQFEG-HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1130)
Q Consensus 490 ~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1130)
...+.. ....+..+++.+ ++.++++...++.|.+|+..+.............+..++++++|+.+++... ++.
T Consensus 99 ~~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~~ 172 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NNR 172 (270)
T ss_dssp CEECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GTE
T ss_pred EeeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CCE
Confidence 554442 335688888865 5567777777889999976544333322222335788999999986666543 678
Q ss_pred EEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEE
Q 001184 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLV 648 (1130)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~ 648 (1130)
|.+||..+........... .....++++++|..+++...++.|.+|+........ ... .+...+.+++++++|++++
T Consensus 173 i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp EEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEE
T ss_pred EEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEE
Confidence 9999987665443222221 357789999999777777778899999987654332 221 2223578999999999888
Q ss_pred EEeCCCcEEEEEcCCC
Q 001184 649 VTTADQGIKILANADG 664 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~~~ 664 (1130)
+...++.|++++....
T Consensus 250 ~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEGGGTEEEEECCCGG
T ss_pred EECCCCEEEEEcCCCc
Confidence 8888999999997654
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.45 E-value=1.7e-10 Score=128.56 Aligned_cols=275 Identities=9% Similarity=-0.049 Sum_probs=178.0
Q ss_pred EEecCCCeEEEEEe-CcC---eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe-
Q 001184 354 DFHPFHHTLLVVGC-GDG---EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF- 428 (1130)
Q Consensus 354 ~fspdg~~llasg~-~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~- 428 (1130)
...|++++++++-. ... +|.+||..+++.+.. +.....+ .+++||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34577775444332 222 889999999887642 2222223 899999999998885
Q ss_pred ---------CCCeEEEEEecCCccceeeeeee--c---CCCCeeEEEEecCCCceEEEEEc--CCCcEEEEecCCCeeeE
Q 001184 429 ---------TKHLIHLYTYQGSNDLCQSLEID--A---HVGGVNDLAFSYPNKQLCIVTCG--DDKLIRVWDLSGRKLFQ 492 (1130)
Q Consensus 429 ---------~d~~i~vwd~~~~~~~~~~~~~~--~---h~~~V~~i~~s~d~~~l~l~s~s--~d~~v~iwd~~~~~~~~ 492 (1130)
.++.|.+||..+.+.+.... +. . +......++|+|||+ +|+.++ .++.|.++|.+++.+..
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD~t~~~~~~ 162 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVVQGGSSDDQ 162 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEECCCCEEeE
Confidence 36789999998876554321 11 0 012345899999999 455554 25789999933444445
Q ss_pred -ecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec-----CCCcc-EEEEEEecCCCeEEEeeecCCC
Q 001184 493 -FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-----APGLW-CTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 493 -~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
+. .... +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 163 ~i~-~~~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---- 232 (373)
T 2mad_H 163 LLS-SPTC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---- 232 (373)
T ss_pred EcC-CCce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----
Confidence 33 2222 23333333 45677788999999999 655442211 11112 233566777666555443
Q ss_pred CcEEEEeeCCCCc--eeEEEecc---------cCceeEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCceeE
Q 001184 566 DSHLVEWNESEGA--LKRTYIGF---------RKKSAGVVQFDTTRNRILAAGE----------DNQIKFWDMDNVNMLT 624 (1130)
Q Consensus 566 ~~~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~ 624 (1130)
.+.+.+.|..++. .+..+.-. .......+.+++++++++++.. ++.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 6789999986543 22222110 1112334788999998888653 3579999999999999
Q ss_pred EEeccCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCCc
Q 001184 625 STEAEGGLPSLPRLRFNKEGN-LLVVTT-ADQGIKILANADGL 665 (1130)
Q Consensus 625 ~~~~~~~~~~i~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~ 665 (1130)
.+.... ....++|+|||+ .++++. .++.|.++|..++.
T Consensus 313 ~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 313 QISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 886543 468999999999 777776 58999999998873
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.45 E-value=6.8e-12 Score=155.23 Aligned_cols=246 Identities=11% Similarity=0.045 Sum_probs=160.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCC-----CeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL-- 479 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~-- 479 (1130)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 455578899999999999988654 4699999999875431 112222467899999 8 4555555443
Q ss_pred ------------EEEEe-cCCC----eeeEecCCCcCEEEEeecccCCccEEEEEecCC-----cEEEEEccCC--ccee
Q 001184 480 ------------IRVWD-LSGR----KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG-----KIKAWLYDNV--GSRV 535 (1130)
Q Consensus 480 ------------v~iwd-~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~--~~~~ 535 (1130)
|++|+ .++. .+.....+...+..+.|+ +||++|+..+.++ .|.+||++++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVS--SDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEEC--CCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 88999 4443 222223333457778774 5667887776544 8999999876 3133
Q ss_pred eecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc-eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEE
Q 001184 536 DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF 614 (1130)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 614 (1130)
.+..+...+... ++|+|+.|+..+......+.|++||+.++. ....+..+....+..+.++ ++..+++...|+..++
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 344343334444 358999998887543346789999998752 3334444444456667776 5567777888888777
Q ss_pred EeCC-CCceeEEEeccCCCCCcceEEEcCCCCEEEEEe----CCCcEEEEEcCCC
Q 001184 615 WDMD-NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT----ADQGIKILANADG 664 (1130)
Q Consensus 615 wd~~-~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~----~dg~i~iw~~~~~ 664 (1130)
|.+. ++.....+..+. ...+..+.++|++..++... ..+.|++||+.++
T Consensus 389 ~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 7554 455555555432 23578889999887666332 2478999998776
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=2.1e-11 Score=136.00 Aligned_cols=203 Identities=14% Similarity=0.124 Sum_probs=143.8
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEE
Q 001184 837 PCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL 913 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 913 (1130)
..++++|||++++++. ++.|.+.|+.+++.+.++..... ....|++...+++.+.||.+.+.+..+++.....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4578999999988875 47899999999999998874321 3344434466667778888888888666554321
Q ss_pred ----ecCCCCe-eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccC------CCCCCCeEEEEEcCCCcEEEE
Q 001184 914 ----KGHQKHI-TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 914 ----~~h~~~V-~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
.....++ ..+.|++++..++..+..+.|.+.|+............... +..+.....++++||+..+++
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 1111222 24578999998888888899999998764422111111110 001122234789999988777
Q ss_pred Ec-----------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCccccccc
Q 001184 983 NH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 983 ~~-----------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~-~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
.. ++.|.++|..+++.+..+... ....+++|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 42 347999999999999998764 3588999999999 888888 5899999999999998886
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.41 E-value=1.1e-11 Score=153.45 Aligned_cols=247 Identities=8% Similarity=-0.042 Sum_probs=155.6
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcC----eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
|...+..++|||||++++++.+.+| .|++||+.+|+.+.. ..+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-
Confidence 3347889999999997544444333 599999999987531 011112357899999
Q ss_pred CEEEEEeCCCe--------------EEEEEecCCccce-eeeeeecCCCCeeEEEEecCCCceEEEEEcC-----CCcEE
Q 001184 422 NFIGVAFTKHL--------------IHLYTYQGSNDLC-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-----DKLIR 481 (1130)
Q Consensus 422 ~~las~~~d~~--------------i~vwd~~~~~~~~-~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~-----d~~v~ 481 (1130)
+.|+.++.++. |++|++.++.... .......+...+..+.|||||+. |+..+. ...|+
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVH 297 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEE
Confidence 99999887654 8899987765321 11122233446889999999994 444443 34899
Q ss_pred EEe-cCC--CeeeEecCCCcCEEEEeecccCCccEEEEEec----CCcEEEEEccCC--cceeeecCCCccEEEEEEecC
Q 001184 482 VWD-LSG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV----DGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSAD 552 (1130)
Q Consensus 482 iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~~ 552 (1130)
+|| .++ .+...+..+...+....+ +++..|+..+. ++.|.+||+++. .....+..+...+..+.++ +
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~ 373 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G 373 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B
T ss_pred EEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C
Confidence 999 444 315566656555554432 34566666665 345999998874 2233334444456677777 4
Q ss_pred CCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEE-e---CCCcEEEEeCCCCce
Q 001184 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA-G---EDNQIKFWDMDNVNM 622 (1130)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i~vwd~~~~~~ 622 (1130)
+..+++... ++...|++++. ++...+.+.......+..+.++|+++.++.. + ..+.|++||+.+++.
T Consensus 374 ~~lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 374 NRLFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 445555543 23345556665 3555555554334467888999998765533 2 347899999988863
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.38 E-value=1.7e-10 Score=126.68 Aligned_cols=248 Identities=13% Similarity=0.077 Sum_probs=164.9
Q ss_pred CCCCEEEEEEecCCCeEEEE-------EeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 346 QGSSVVSMDFHPFHHTLLVV-------GCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llas-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
.-....+++|+++|+ ++++ +..++.|.+||..+++.... .. ....++...+.+++++
T Consensus 16 ~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------~~---------~~~~~~~~~~~~i~~~ 79 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------CK---------PEVNGYGGIPAGCQCD 79 (314)
T ss_dssp CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE------EC---------CEETTEECCEEEEEEC
T ss_pred cCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE------Ee---------cccCCCCCCCceEEEe
Confidence 345678999999997 5666 56688999999888775421 00 0012345679999999
Q ss_pred CC-CCEEEEEeCCCeEEEEEecCCcccee-eeeeec-CCCCeeEEEEecCCCceEEEEEcCC---------------CcE
Q 001184 419 PD-GNFIGVAFTKHLIHLYTYQGSNDLCQ-SLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDD---------------KLI 480 (1130)
Q Consensus 419 pd-g~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~-h~~~V~~i~~s~d~~~l~l~s~s~d---------------~~v 480 (1130)
++ |+++++.. .+.|.+||.+ ++.... .....+ ....+.++++.++|+ +.++...+ +.|
T Consensus 80 ~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 80 RDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred cCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeE
Confidence 99 76555554 4478999988 653221 100011 224589999999998 56666554 567
Q ss_pred EEEecCCCeeeEecCCCcCEEEEeec--ccCCccEEEE-EecCCcEEEEEcc-CCc-----ceeeecCCC-ccEEEEEEe
Q 001184 481 RVWDLSGRKLFQFEGHEAPVYSVCPH--QKENIHFIFS-TAVDGKIKAWLYD-NVG-----SRVDYDAPG-LWCTTMLYS 550 (1130)
Q Consensus 481 ~iwd~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s-~s~dg~i~vwd~~-~~~-----~~~~~~~~~-~~v~~~~~s 550 (1130)
..||..++... +..+......++++ .+++++.++. ...++.|.+|+++ .+. ....+..+. ..+..++++
T Consensus 156 ~~~~~~g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 156 YCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EEECTTSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EEECCCCCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 77885555433 33344456777775 1145555544 4567899999986 332 112223332 557889999
Q ss_pred cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 001184 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDN 619 (1130)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~ 619 (1130)
++|+.+++... ++.|.+||..+++.+..+..+. ..+.+++++++++.|+++ ..++.|..|++..
T Consensus 235 ~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~-~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC-CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99988777643 6789999998788777776543 368889999999955554 4568899999864
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.36 E-value=7.7e-11 Score=131.49 Aligned_cols=272 Identities=10% Similarity=0.074 Sum_probs=182.7
Q ss_pred cCCCeEEEEEeCc----CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe----
Q 001184 357 PFHHTLLVVGCGD----GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF---- 428 (1130)
Q Consensus 357 pdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~---- 428 (1130)
|++++++++...+ +.|.++|..+++.+...+ .+ ..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~------------------vG-~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD------------------GG-FLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------EC-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE------------------CC-CCC--ceEECCCCCEEEEEecccc
Confidence 5666655555544 799999999998876311 12 223 799999999888775
Q ss_pred ------CCCeEEEEEecCCccceeeeeee--c---CCCCeeEEEEecCCCceEEEEEc--CCCcEEEEe-cCCCeeeEec
Q 001184 429 ------TKHLIHLYTYQGSNDLCQSLEID--A---HVGGVNDLAFSYPNKQLCIVTCG--DDKLIRVWD-LSGRKLFQFE 494 (1130)
Q Consensus 429 ------~d~~i~vwd~~~~~~~~~~~~~~--~---h~~~V~~i~~s~d~~~l~l~s~s--~d~~v~iwd-~~~~~~~~~~ 494 (1130)
.++.|.++|..+++.+.... +. . .......++|+|||++ ++.+. .++.|.+.| .+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987655322 21 0 1234567899999994 55544 368999999 7888877776
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee----eecCCCcc-EEEEEEecCCCeEEEeeecCCCCcEE
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----DYDAPGLW-CTTMLYSADGSRLFSCGTSKEGDSHL 569 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~----~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1130)
--.. ....+... ..+++.+.||++.+.+....+... .+.....+ ...+.|.+++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 3211 12223222 466677788888888874433321 11212222 123567899888877654 6789
Q ss_pred EEeeCCCCcee--EEEecc---------cCceeEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCceeEEEec
Q 001184 570 VEWNESEGALK--RTYIGF---------RKKSAGVVQFDTTRNRILAAGE----------DNQIKFWDMDNVNMLTSTEA 628 (1130)
Q Consensus 570 ~~wd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~ 628 (1130)
++.|....... ..+.-. .......++++++++++++... ++.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998654421 111100 0001223689999998877642 35799999999999999876
Q ss_pred cCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCC
Q 001184 629 EGGLPSLPRLRFNKEGN-LLVVTT-ADQGIKILANADG 664 (1130)
Q Consensus 629 ~~~~~~i~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~ 664 (1130)
.. ....++|+|||+ ++++.. .++.|.++|..+.
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 54 368999999999 888888 5899999999887
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.35 E-value=2.9e-09 Score=115.68 Aligned_cols=240 Identities=11% Similarity=0.012 Sum_probs=167.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC
Q 001184 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~ 486 (1130)
.....+.+++++++|+.+++...++.|.+||.. ++... ..+..+...+.++++.++|. +.++...++.|..||..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLSKK 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEECCC
Confidence 445678999999999988887778999999987 54222 22334456799999999998 67777778899999955
Q ss_pred CCeee-EecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcce-eeecCCCccEEEEEEecCCCeEEEeeecCC
Q 001184 487 GRKLF-QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1130)
Q Consensus 487 ~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1130)
++... .+......+.++++. +++.++++...++.|..||.+ +... ..+......+..+++.++|+..++...
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~--- 165 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ--- 165 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT---
T ss_pred CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC---
Confidence 65532 222244678888885 455677776668899999887 3332 223334457899999999996655432
Q ss_pred CCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC
Q 001184 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1130)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 644 (1130)
.+.|..+|. +++............+..+++.++++.+++....+.|.+|+. +++.... ........+.+++++++|
T Consensus 166 -~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 166 -NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNS 241 (300)
T ss_dssp -TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTT
T ss_pred -CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCC
Confidence 678999998 565544222122235778999999887776666778999998 5554332 222233467899999999
Q ss_pred CEEEEEeCCCcEEEEEc
Q 001184 645 NLLVVTTADQGIKILAN 661 (1130)
Q Consensus 645 ~~l~~~~~dg~i~iw~~ 661 (1130)
++.++...++.|..|+.
T Consensus 242 ~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITN 258 (300)
T ss_dssp CEEEEETTTTEEEEECT
T ss_pred CEEEeccCCCeEEEECC
Confidence 87666656788888876
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=1.2e-10 Score=128.12 Aligned_cols=176 Identities=13% Similarity=0.092 Sum_probs=136.9
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEECCCce-----------eEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEE
Q 001184 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK-----------VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIY 902 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iw 902 (1130)
..+..+++++...++++|+...+.+|++...+ ..... .+.. |+.++| ++.+|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999997788889876443 11223 3455 999999 56788888 88999999
Q ss_pred EeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 903 NVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 903 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
|+.+.........|..++.++.+.+. .+++++.||.|.+||++.+.... ....|++++|||+| ..+.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----------~~~~Vs~v~WSpkG-~~vg 178 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----------LAQNVTSFDVTNSQ-LAVL 178 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----------EEESEEEEEECSSE-EEEE
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----------ccCCceEEEEcCCc-eEEE
Confidence 99877666667778888998887755 38899999999999999765421 11579999999999 5556
Q ss_pred EcCCcEEEEECCCcee--eeeeec------CCCCCCCeEEEEECCCCCEEEEEe
Q 001184 983 NHETQLAIYDGSKMEC--IRQWVP------QDVLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 983 ~~d~~i~v~d~~~~~~--~~~~~~------~~~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
..|+.+++|+...++. .+.+.. +.+|...|.+++|.+++.++++=.
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 7899999999988775 445521 113478999999999999888733
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.32 E-value=3.9e-10 Score=123.69 Aligned_cols=245 Identities=12% Similarity=0.057 Sum_probs=162.1
Q ss_pred CCCccEEEEEEcCCCCEEEE-------EeCCCeEEEEEecCCccceeee-eeecCCCCeeEEEEecC-CCceEEEEEcCC
Q 001184 407 DSSISVSRVAWSPDGNFIGV-------AFTKHLIHLYTYQGSNDLCQSL-EIDAHVGGVNDLAFSYP-NKQLCIVTCGDD 477 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~~las-------~~~d~~i~vwd~~~~~~~~~~~-~~~~h~~~V~~i~~s~d-~~~l~l~s~s~d 477 (1130)
..-....+++|+++|+++++ +..++.|.+||..+++...... ...++...+.+++++++ |+ ++++.. .
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~ 91 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-R 91 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-T
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-C
Confidence 33446789999999998887 5678899999988776422100 00125567999999999 66 445444 4
Q ss_pred CcEEEEecCCCeeeE-ecC----CCcCEEEEeecccCCccEEEEEecC---------------CcEEEEEccCCcceeee
Q 001184 478 KLIRVWDLSGRKLFQ-FEG----HEAPVYSVCPHQKENIHFIFSTAVD---------------GKIKAWLYDNVGSRVDY 537 (1130)
Q Consensus 478 ~~v~iwd~~~~~~~~-~~~----h~~~v~~~~~~~~~~~~~l~s~s~d---------------g~i~vwd~~~~~~~~~~ 537 (1130)
+.|.+||.+++.... ... ....+.++++.+ ++.++++...+ +.|..|+.+ ++ ...+
T Consensus 92 ~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~ 167 (314)
T 1pjx_A 92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY--EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQV 167 (314)
T ss_dssp TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT--TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEE
T ss_pred CCEEEEeCCCCEEEEEeccCCCccccCCcCEEECC--CCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEe
Confidence 478999944654332 221 123577888854 55677666554 456666654 22 2222
Q ss_pred cCCCccEEEEEEe----cCCCeEEEeeecCCCCcEEEEeeCC-CCce-----eEEEecccCceeEEEEEcCCCCEEEEEe
Q 001184 538 DAPGLWCTTMLYS----ADGSRLFSCGTSKEGDSHLVEWNES-EGAL-----KRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1130)
Q Consensus 538 ~~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1130)
.........++++ |+++.++++.. .++.|++||.. +++. ...+..+.......++++++|+.+++..
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 2222346789999 99987666542 26789999976 4432 1222222103567799999998888877
Q ss_pred CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEcCC
Q 001184 608 EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT-TADQGIKILANAD 663 (1130)
Q Consensus 608 ~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~-~~dg~i~iw~~~~ 663 (1130)
.++.|.+||..+++.+..+..+. ..+.+++++|+++.|+++ ..++.|..|++..
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 88999999998787776665543 368899999999955554 4567898998764
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=1.2e-09 Score=123.58 Aligned_cols=239 Identities=10% Similarity=-0.000 Sum_probs=160.3
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
.....++|+|+|+ ++++...++.|++||..++.... +.... .... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~-------------------~~~~~-~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTT-------------------VHPGF-KGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEE-------------------EEETC-CBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEE-------------------eeccC-CCCc-eeEecCCCcEEEE
Confidence 4789999999997 78887778999999998877653 12222 2233 9999999999988
Q ss_pred eCCC--eEEEEEecCCccceeeeeeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEe-----cCCCcC
Q 001184 428 FTKH--LIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF-----EGHEAP 499 (1130)
Q Consensus 428 ~~d~--~i~vwd~~~~~~~~~~~~~~~-h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~-----~~h~~~ 499 (1130)
..++ .|.+|+..++........+.. ....+.+++++|++.. |+.+..++.|+.||..+.....+ .++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 788888877654322111112 4567889999995553 44466788999999443333333 222222
Q ss_pred E--EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC---------------CccEEEEEEecCCCeEEEeeec
Q 001184 500 V--YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP---------------GLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 500 v--~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
- ..++|++. ++.++++...+++|+.|+.+.. ...+... -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 28888763 3466777777889999987654 2222111 13478999999999666543
Q ss_pred CCCCcEEEEeeCCCCceeEEEeccc--------------CceeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001184 563 KEGDSHLVEWNESEGALKRTYIGFR--------------KKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 617 (1130)
..+..|+.|+..++.. ..+.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0278999999877764 3444330 124667899999777777777788887765
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.28 E-value=5.8e-10 Score=136.41 Aligned_cols=250 Identities=12% Similarity=0.040 Sum_probs=162.7
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCc----CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGD----GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 421 (1130)
|...+..++|||||++++++.+.. ..|+|||+.+|+.+.. .+.+ .....++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------~~~~--~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------PLKD--VKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------EEEE--EESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------ccCC--ceeccEEEe-CC
Confidence 556789999999999755544333 5799999999986531 0111 113568899 99
Q ss_pred CEEEEEeCCC-------------eEEEEEecCCccce-eeeeeec-CCCCeeEEEEecCCCceEEEEEc---CCCcEEEE
Q 001184 422 NFIGVAFTKH-------------LIHLYTYQGSNDLC-QSLEIDA-HVGGVNDLAFSYPNKQLCIVTCG---DDKLIRVW 483 (1130)
Q Consensus 422 ~~las~~~d~-------------~i~vwd~~~~~~~~-~~~~~~~-h~~~V~~i~~s~d~~~l~l~s~s---~d~~v~iw 483 (1130)
+.|+.++.+. .|++|++.++..-. ....... |...+..+.|+|||+.+ +++.+ .++.|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999998774 39999998765321 1222233 45567899999999963 33333 23589999
Q ss_pred e-cCCC-eeeEecCCCcCEEEEeecccCCccEEEEEecC---CcEEEEEccCCcc--eeeecCCCccEEEEEEecCCCeE
Q 001184 484 D-LSGR-KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 484 d-~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
| .++. ....+..+....... +.+.+ +.+++....+ +.|..+++.+... ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 9 4432 556666666665554 33322 3444555443 5788999987654 233444444444 899999998
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCcee
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED----NQIKFWDMDNVNML 623 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~ 623 (1130)
+.... .++...|++||+..+ ..+.+.......+..+.++++++.++....+ +.++.||+.+++..
T Consensus 341 v~~~~-~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYM-VDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEE-ETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEE-ECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 87764 233458999998754 4444443333356667778888766665444 78999999887643
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.27 E-value=1.6e-09 Score=122.56 Aligned_cols=253 Identities=9% Similarity=0.010 Sum_probs=165.2
Q ss_pred CCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC--cEEEEEeecCeE
Q 001184 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEV 909 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~ 909 (1130)
-.....++++++|+++++.. ++.|++||..++......... .... ++|++ ++..|++++.++ .|++|+..++..
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCce
Confidence 34578999999999777666 689999999988777666543 3333 99999 777888887766 788888876654
Q ss_pred EEEE----ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCC-eEEEEEcCCCcEEE-E-
Q 001184 910 KTKL----KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG-ETRVQFHSDQVRLL-V- 982 (1130)
Q Consensus 910 ~~~l----~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~-~- 982 (1130)
...+ ..+...+.+++++|++..|+.+..++.|+.||..++......... ..+..... ...++|+|++..|+ +
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCCCCccccEEEeCCCCEEEEEe
Confidence 4444 224566889999996556666778889999999876421110000 11111111 13899999644444 4
Q ss_pred EcCCcEEEEECCCceeeeeeecCC------------CCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcccccccCC
Q 001184 983 NHETQLAIYDGSKMECIRQWVPQD------------VLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 983 ~~d~~i~v~d~~~~~~~~~~~~~~------------~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
..++.|+.|+.... +..+.+.. ..-.....++++++|+++++-. .+++|++|++.+++.......
T Consensus 286 ~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp TTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCC
Confidence 34778999987643 22332221 0013478999999999888777 789999999888875433221
Q ss_pred Cc---ccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeC
Q 001184 1050 SA---YMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1092 (1130)
Q Consensus 1050 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~ 1092 (1130)
.. +.........-..+..+++.++ +.++++-..+++|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 00 0000000111234677888885 778888888888888765
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=1.7e-09 Score=117.25 Aligned_cols=228 Identities=11% Similarity=0.086 Sum_probs=154.3
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
..-..+..|+|+++.++++...++.|..||..+++... + .....+.+++++|||+++++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v~ 70 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVAT 70 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEEE
Confidence 34567899999777788888888999999998876532 1 22457999999999996554
Q ss_pred EeCCCeEEEEEecCCccceeeeeeec--CCCCeeEEEEecCCCceEEEEE-cC----------CCcEEEEecCCCeeeEe
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTC-GD----------DKLIRVWDLSGRKLFQF 493 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~--h~~~V~~i~~s~d~~~l~l~s~-s~----------d~~v~iwd~~~~~~~~~ 493 (1130)
. ++.|.+||.++++.. ....... ....+.++++.|+|+ +.++. +. .+.|..+|..++... +
T Consensus 71 ~--~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~ 144 (297)
T 3g4e_A 71 I--GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y 144 (297)
T ss_dssp E--TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E
T ss_pred E--CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-E
Confidence 3 567999999887532 2211111 224588999999998 44543 21 234444444454433 3
Q ss_pred cCCCcCEEEEeecccCCccEE-EEEecCCcEEEEEcc--CCcc-----eeeecCCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 494 EGHEAPVYSVCPHQKENIHFI-FSTAVDGKIKAWLYD--NVGS-----RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~vwd~~--~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
..+....+.++|++ +++.| ++.+.++.|.+|+++ ++.. ...+......+..++++++|++.++...
T Consensus 145 ~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---- 218 (297)
T 3g4e_A 145 FDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---- 218 (297)
T ss_dssp EEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----
T ss_pred eeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----
Confidence 33445567888865 44544 556668899999984 3321 1122222346789999999987766643
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEc-CCCCEEEEEeC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFD-TTRNRILAAGE 608 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 608 (1130)
.+.|..||..+++.+..+..+.. .+.+++|. |+++.|+.++.
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred CCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 67899999999999888876533 68889998 88887766654
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=2.4e-10 Score=126.79 Aligned_cols=270 Identities=11% Similarity=0.003 Sum_probs=171.6
Q ss_pred CCEEEEEEecCCCeEEEEEeC--cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCG--DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
..+..++++|+|+ ++++... ++.++||.+.+++... +.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~~---~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLIP---FPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEEE---SCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCeec---CCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 5776532 3436677665554331 11111 01234667899999999998777
Q ss_pred EEeC-----CCeEEEEEecCCccceeeeeee----cCCCCeeEEEEecCCCceEEEEEc---CCCcEEEEe-cCCCeeeE
Q 001184 426 VAFT-----KHLIHLYTYQGSNDLCQSLEID----AHVGGVNDLAFSYPNKQLCIVTCG---DDKLIRVWD-LSGRKLFQ 492 (1130)
Q Consensus 426 s~~~-----d~~i~vwd~~~~~~~~~~~~~~----~h~~~V~~i~~s~d~~~l~l~s~s---~d~~v~iwd-~~~~~~~~ 492 (1130)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+|| .+++....
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999988744322 221 22345789999987653 456655 688999999 66777666
Q ss_pred ecCCCcCEE-EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 493 FEGHEAPVY-SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 493 ~~~h~~~v~-~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
+.+|..... ...+. .++..+.+.+.+++++.|. ..+..++|+|||+.|+++... ...++.
T Consensus 161 ~~~~~~~~~~~~~~~--~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLV--IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCE--ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCccccccccee--ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 665432211 01221 2445666677788776653 136789999999988887641 346666
Q ss_pred eeCC---CCc-----eeE--EEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEc
Q 001184 572 WNES---EGA-----LKR--TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1130)
Q Consensus 572 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1130)
++.. .+. ... ...++.. ....++++++|+.+++...++.|.+||..+++........ ......+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 6532 111 000 1112221 3456889999998888888999999998667644333322 22357889999
Q ss_pred CCCCEEEEEeCCC
Q 001184 642 KEGNLLVVTTADQ 654 (1130)
Q Consensus 642 ~~~~~l~~~~~dg 654 (1130)
+++.++++....+
T Consensus 300 ~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 300 SDGYLYFDCNQLH 312 (343)
T ss_dssp TTSCEEEEECCGG
T ss_pred CCCcEEEEeCccc
Confidence 9888777765443
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=2.8e-09 Score=115.46 Aligned_cols=230 Identities=7% Similarity=-0.025 Sum_probs=151.1
Q ss_pred CCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEE
Q 001184 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK 910 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 910 (1130)
..-..+.+|++++..|...+ ++.|..||..+++.. .+. ....+.++++++ +++++++ . ++.|.+||..+++..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEE
Confidence 34456889999766555554 689999999887653 333 356799999999 7775554 3 567999999888754
Q ss_pred EEEecC----CCCeeEEEEccCCCeEEEEeCC---------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCC
Q 001184 911 TKLKGH----QKHITGLAFSTNLNILVSSGSD---------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 911 ~~l~~h----~~~V~~l~~s~dg~~L~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 977 (1130)
...... ...+.+++++|+|+++++...+ ..-.+|.++........... ......++|+||+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~------~~~pngi~~spdg 160 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ------VDISNGLDWSLDH 160 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE------ESBEEEEEECTTS
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec------cccccceEEcCCC
Confidence 333221 2347889999999977765332 23456666542221111111 1345689999999
Q ss_pred cEEEEE--cCCcEEEEEC--CCceee--eeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCc
Q 001184 978 VRLLVN--HETQLAIYDG--SKMECI--RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1130)
Q Consensus 978 ~~l~~~--~d~~i~v~d~--~~~~~~--~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1051 (1130)
+.|++. .++.|.+|++ .++... ..+.....+......++++++|++.++...++.|.+||..+|+.+..+..+.
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 977663 4788999987 455432 1222111113567899999999988888778899999999999887765321
Q ss_pred ccccCCCCCceeeeEEEEEc-CCCCCEEEEEeCC
Q 001184 1052 YMSQASPNSQTVFPLVVTSH-PQEPNQLAVGLTD 1084 (1130)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~s~~~D 1084 (1130)
..+.+++|. |+...++++...+
T Consensus 241 -----------~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 241 -----------DKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp -----------SBEEEEEEESGGGCEEEEEEBCT
T ss_pred -----------CCceEEEEeCCCCCEEEEEcCCc
Confidence 346678897 5434445555433
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=2.3e-09 Score=116.80 Aligned_cols=234 Identities=10% Similarity=0.028 Sum_probs=156.4
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.+.......+|+|+|+++++++..++.|..|+. +++.. .+..+...+..++++++|+++
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~--------------------~~~~~~~~~~gl~~d~dG~l~ 100 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD--------------------VLLDATAFTNGNAVDAQQRLV 100 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE--------------------EEEESCSCEEEEEECTTSCEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE--------------------EEeCCCCccceeeECCCCCEE
Confidence 355678899999999988888888999999998 44432 133445678999999999977
Q ss_pred EEEeCCCeEEEEEecCCccceeeeeeecC-CCCeeEEEEecCCCceEEEE----EcC-------------CCcEEEEec-
Q 001184 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAH-VGGVNDLAFSYPNKQLCIVT----CGD-------------DKLIRVWDL- 485 (1130)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~V~~i~~s~d~~~l~l~s----~s~-------------d~~v~iwd~- 485 (1130)
++...++.|.+|+.. ++.........+. ...+.++++.++|+ +.+| |.. .+.|..||.
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 766666889999986 4422111111111 23577899999998 6665 332 256788884
Q ss_pred CCCeeeEecCCCcCEEEEeecccCCccEEEEEecC------CcEEEEEccCCcc---eeeecCCCccEEEEEEecCCCeE
Q 001184 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSRL 556 (1130)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l 556 (1130)
+++..... .......++|++ +++.|+.+... +.|.+|++..... .............++++++|+..
T Consensus 178 ~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp SCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE
T ss_pred CCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE
Confidence 56544333 445667888854 55667666554 7899999875431 11111122345678999999955
Q ss_pred EEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001184 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1130)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 616 (1130)
++. .+.|.+|+. +++.+..+.... .+..++|+++++.|+.++.++ ++.++
T Consensus 254 v~~------~~gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 254 SSS------GTGVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ECC------SSEEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred Eec------CCcEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 443 234999997 577777776543 477889999998888887754 44433
No 221
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.22 E-value=1.5e-05 Score=94.62 Aligned_cols=533 Identities=10% Similarity=-0.009 Sum_probs=283.6
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecC-CCcCEE
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG-HEAPVY 501 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~-h~~~v~ 501 (1130)
+|+.+ ....|+..++.+.... ....+. .-..+..++|.+.+.. ++++-..++.|+.++..|..+..+.. ......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~-~~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNN-VAIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCE-EECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcc-eEEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 4567899999865421 111222 2345889999997764 55666678899999866654444332 223466
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
.+++.+. .+++.++-...+.|.+.+++...........-.....+++.|....|+.+-. ...+.|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 7777543 3356666667788999998765544433334446789999997666666532 125688888876444333
Q ss_pred EEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001184 582 TYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1130)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~ 660 (1130)
... .......++++++++.|+.+. ..+.|..+|+..... ..+... ......+++.. +.+.++-...+.|...|
T Consensus 161 l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 332 223567799999887777765 467899999876544 333222 22456777765 44444444578888888
Q ss_pred cCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCC
Q 001184 661 NADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDK 740 (1130)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 740 (1130)
..++.. ...+...... ...+ ..+.+. .+.....+. ...+.
T Consensus 235 k~tg~~-~~~l~~~~~~----------p~~i--~v~~~~----------~q~~~n~C~-----------------~~ng~ 274 (628)
T 4a0p_A 235 KTSGQN-RTIIQGHLDY----------VMDI--LVFHSS----------RQSGWNECA-----------------SSNGH 274 (628)
T ss_dssp TTTCCS-CEEEECSCCS----------CCEE--EEECGG----------GSCCCCTTT-----------------TTGGG
T ss_pred CCCCCc-eEEEecCCCC----------ccee--eeeeec----------ccccceEec-----------------cCCCC
Confidence 666522 1222111000 0000 011111 000000000 00000
Q ss_pred ccceeeccccCCcceeEEEecCC-CCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCC
Q 001184 741 TKPWELTEIVDPLQCRVVAMPES-TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819 (1130)
Q Consensus 741 i~~w~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 819 (1130)
..-.-+...... .....+.+ .-.....++. .+ ...++.+ ....|+-..+....
T Consensus 275 C~~~C~~~~~~~---~~C~C~~g~~l~~d~~~C~--~~-~~~Ll~s-~~~~i~~i~l~~~~------------------- 328 (628)
T 4a0p_A 275 CSHLCLAVPVGG---FVCGCPAHYSLNADNRTCS--AP-TTFLLFS-QKSAINRMVIDEQQ------------------- 328 (628)
T ss_dssp CSSEEEEETTTE---EEEECSTTCEECTTSSCEE--CC-SSEEEEE-ETTEEEEECCCTTC-------------------
T ss_pred cchhhhcCCCCC---eeEEcCCCcEecccCCcCc--cc-cceeeee-ccceEEEEeccccc-------------------
Confidence 000000000000 00000000 0000111111 11 2223222 23334332221100
Q ss_pred CCcceeccCCCCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeC------CCCCeEEEEEeCCCCcEEE
Q 001184 820 NGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS------PPPASTFLAFHPQDNNIIA 891 (1130)
Q Consensus 820 ~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~~~~~la 891 (1130)
..... ++-..-..+..++|.+.+..|..+. .+.|+.++.........+.. ....+..+++...++.+..
T Consensus 329 -~~~~~--l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~ 405 (628)
T 4a0p_A 329 -SPDII--LPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYW 405 (628)
T ss_dssp -CCCEE--CCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEE
T ss_pred -CceEE--EEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEE
Confidence 00000 1112235578899999877777766 57899998876443333332 2346889999984455666
Q ss_pred EEeCCCcEEEEEeecCeEEEEE-ecCCCCeeEEEEccCCCeEEEEe-CCC--cEEEEECCCCcccceeeEeccCCCCCCC
Q 001184 892 IGMEDSTIQIYNVRVDEVKTKL-KGHQKHITGLAFSTNLNILVSSG-SDA--QLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1130)
Q Consensus 892 sg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s-~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1130)
+-+..+.|.+.++. |+....+ ........+|++.|...+|.... ... .|...+++.... ... . .. .-..
T Consensus 406 td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l-~---~~-~l~~ 478 (628)
T 4a0p_A 406 TCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVL-F---FS-GLSK 478 (628)
T ss_dssp EETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEE-E---CS-SCSC
T ss_pred EcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEE-E---ec-cCCC
Confidence 66677889999986 4444343 34556789999999544444333 232 466666654221 111 1 11 1145
Q ss_pred eEEEEEcCCCcEEEEE--cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccc
Q 001184 968 ETRVQFHSDQVRLLVN--HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC 1045 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1045 (1130)
...+++++++..|..+ ..+.|..+++.. .....+... ......++++.. +.+..+-...+.|...|-.+|+...
T Consensus 479 P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r~~~~~~--~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~ 554 (628)
T 4a0p_A 479 PIALALDSRLGKLFWADSDLRRIESSDLSG-ANRIVLEDS--NILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRT 554 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECS--SCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCE
T ss_pred ccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-CceEEEEcC--CCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcE
Confidence 6889999988777764 357899999854 434444321 123456777754 4455554456788888888777554
Q ss_pred ccC
Q 001184 1046 RIA 1048 (1130)
Q Consensus 1046 ~~~ 1048 (1130)
.+.
T Consensus 555 ~i~ 557 (628)
T 4a0p_A 555 KVQ 557 (628)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.22 E-value=5.5e-09 Score=114.79 Aligned_cols=225 Identities=12% Similarity=0.005 Sum_probs=149.8
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
-..+.+|+|+++.+++++..++.|..||..+++... + .....+.+++|+|||+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 457889999877788888888999999998876432 1 123479999999999987765
Q ss_pred CCCeEEEEEecCCccceeeeeee-c-CCCCeeEEEEecCCCceEEEEEcC------CCcEEEEecCCCeeeEecCCCcCE
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEID-A-HVGGVNDLAFSYPNKQLCIVTCGD------DKLIRVWDLSGRKLFQFEGHEAPV 500 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~-~-h~~~V~~i~~s~d~~~l~l~s~s~------d~~v~iwd~~~~~~~~~~~h~~~v 500 (1130)
.+ .|.+||..+++.. ...... + ....+.+++++|+|+ ++++... .+.|..++ +++ +..+..+....
T Consensus 108 ~~-gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~-~g~-~~~~~~~~~~~ 181 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA-KGK-VTKLFADISIP 181 (326)
T ss_dssp TT-EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE-TTE-EEEEEEEESSE
T ss_pred CC-CEEEEECCCCcEE-EEeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe-CCc-EEEeeCCCccc
Confidence 44 4999999887632 211111 1 123689999999998 4454432 24555555 443 33333334456
Q ss_pred EEEeecccCCccEEE-EEecCCcEEEEEcc--CC-cc-----eeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEE
Q 001184 501 YSVCPHQKENIHFIF-STAVDGKIKAWLYD--NV-GS-----RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1130)
Q Consensus 501 ~~~~~~~~~~~~~l~-s~s~dg~i~vwd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1130)
..++|++ +++.++ +.+.++.|.+|+++ ++ .. ...+......+..++++++|++.++... .+.|.+
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDR 255 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEE
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEEE
Confidence 7888864 455554 44567899999986 33 21 1122223445788999999987766542 578999
Q ss_pred eeCCCCceeEEEecccCceeEEEEEc-CCCCEEEEEeCC
Q 001184 572 WNESEGALKRTYIGFRKKSAGVVQFD-TTRNRILAAGED 609 (1130)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d 609 (1130)
||. +++.+..+..... .+.+++|+ ++++.|++++..
T Consensus 256 ~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEecC
Confidence 998 6777777765433 68889998 888877665543
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.18 E-value=3.7e-10 Score=125.23 Aligned_cols=272 Identities=9% Similarity=0.028 Sum_probs=173.8
Q ss_pred cceEEEEEeccCCeEEEeee--CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC
Q 001184 768 SKVARLLYTNSGIGILALWS--NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1130)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1130)
.....++++++|+.+++... ++.+++|.+.. ++.... .-|.. ....+...+..++++++|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~~~---p~~~~---------~~~~~~~~p~gv~~d~~g 78 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLIPF---PPQSG---------NAIITFDTVLGIKSDGNG 78 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEEES---CCCCS---------SCCCCCSCEEEEEECSSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCeecC---CCccc---------CcccceeEeeEEEEcCCC
Confidence 46789999999988777532 34355665531 111000 00000 011356789999999999
Q ss_pred CEEEEEe------CCeEEEEECCCceeEEEEeCC------CCCeEEEEEeCCCCcEEEEEe---CCCcEEEEEeecCeEE
Q 001184 846 SYVMSAG------GGKVSLFNMMNFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGM---EDSTIQIYNVRVDEVK 910 (1130)
Q Consensus 846 ~~la~~~------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~~~~~lasg~---~dg~v~iwd~~~~~~~ 910 (1130)
+++++.. ++.|.+||+.+++.+..+..+ ......++++++++.++++.. .++.|.+||+.+++..
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~ 158 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA 158 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE
Confidence 8776653 378999999999987777532 234689999984455555555 6789999999999887
Q ss_pred EEEecCCCCee-EEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc--CCc
Q 001184 911 TKLKGHQKHIT-GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQ 987 (1130)
Q Consensus 911 ~~l~~h~~~V~-~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~ 987 (1130)
..+.+|..... ...++++|..+.+.+.|+.++.|. ..+..++++|||+.|+++. .+.
T Consensus 159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly~~~~~~~~ 218 (343)
T 2qe8_A 159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLYLSPMHSTS 218 (343)
T ss_dssp EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEEEEESSCSE
T ss_pred EEecCCCcccccccceeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEEEEeCCCCe
Confidence 77766533211 145566787787788888876653 2346799999999888753 334
Q ss_pred EEEEECC---Cce-----eee--eeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCC
Q 001184 988 LAIYDGS---KME-----CIR--QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1130)
Q Consensus 988 i~v~d~~---~~~-----~~~--~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1130)
+..++.. .+. ... ...++ ......++++++|.++++...++.|.+||..+|+.......
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~~g~---~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-------- 287 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSKIERYSE---KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-------- 287 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTTCEEEEE---CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC--------
T ss_pred EEEEEHHHhcCCCCChhhhhcceEeccc---CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC--------
Confidence 5444432 110 000 01111 23456799999999999988899999999856654322210
Q ss_pred CCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001184 1058 PNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIE 1091 (1130)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~ 1091 (1130)
.....+..+++.++ +.++++.+..+.+-+|.
T Consensus 288 --~~~~~p~~va~~~~-g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 288 --EKLSWTDSFNFGSD-GYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp --GGGSCEEEEEECTT-SCEEEEECCGGGSGGGB
T ss_pred --CceecCCeeEECCC-CcEEEEeCccccccccc
Confidence 11234667888884 77888877655544443
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.18 E-value=8.7e-10 Score=134.88 Aligned_cols=244 Identities=12% Similarity=0.142 Sum_probs=157.6
Q ss_pred cCCCccEEEEEEcCCCCEEEEEe-----CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC--
Q 001184 406 KDSSISVSRVAWSPDGNFIGVAF-----TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK-- 478 (1130)
Q Consensus 406 ~~h~~~V~~v~~spdg~~las~~-----~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~-- 478 (1130)
.+|...+..++|||||++||.+. .+.+|++||+.+|+.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCcc
Confidence 35666899999999999999643 235799999999875432 1221 113578999 999 566665553
Q ss_pred -----------cEEEEe-cCCC----eeeEecC-CCcCEEEEeecccCCccEEEEEec----CCcEEEEEccCCc-ceee
Q 001184 479 -----------LIRVWD-LSGR----KLFQFEG-HEAPVYSVCPHQKENIHFIFSTAV----DGKIKAWLYDNVG-SRVD 536 (1130)
Q Consensus 479 -----------~v~iwd-~~~~----~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~~-~~~~ 536 (1130)
.|++|+ .++. ++..... |.....++.++ +|+++|+.... ++.|.++|+++.. ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT--EDDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC--TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc--CCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 499999 4332 2333333 44556777775 45666654432 2478999987764 3344
Q ss_pred ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce--eEEEecccCceeEEEEEcCCCCEEEEEeCCC---c
Q 001184 537 YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDN---Q 611 (1130)
Q Consensus 537 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~ 611 (1130)
+..+....... ++++|..|+..+......+.|..+|+.++.. .+.+..+... +. .|++++++|+....++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CE--EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-EE--EEEEECCEEEEEEEECCeeE
Confidence 44444444444 6778887776654322357899999988754 3456555553 33 7889999887766544 6
Q ss_pred EEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC----CcEEEEEcCCC
Q 001184 612 IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD----QGIKILANADG 664 (1130)
Q Consensus 612 i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~ 664 (1130)
|++|++..+ ....+.... ...+..+.+++++..++....+ +.+..||+.++
T Consensus 352 l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 352 VEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 899998754 444444332 2245566777888777666554 78899988765
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.16 E-value=8.4e-10 Score=121.18 Aligned_cols=198 Identities=9% Similarity=0.008 Sum_probs=129.4
Q ss_pred eEEEEecCCCEEEEEe---CCeEEE--EECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec-----
Q 001184 837 PCVALSKNDSYVMSAG---GGKVSL--FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV----- 906 (1130)
Q Consensus 837 ~~l~~s~dg~~la~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~----- 906 (1130)
..++++|||++++++. ++.|.+ +|+.+ +.++..... ..+.|++...+++.+.||.+.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 4588899998888875 356888 88877 444442211 223453555666777888888888876
Q ss_pred CeEEEE----EecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEecc------CCCCCCCeEEEEEcCC
Q 001184 907 DEVKTK----LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP------AGKLPVGETRVQFHSD 976 (1130)
Q Consensus 907 ~~~~~~----l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d 976 (1130)
++.... +.....+. + ++++..++..+. +.|.+.|+.+............ .+..+.....++++||
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 443211 11112333 3 667777666666 8999999875332111111110 1111122223789999
Q ss_pred CcEEEEE-c-C--------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCcccc
Q 001184 977 QVRLLVN-H-E--------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLR 1044 (1130)
Q Consensus 977 ~~~l~~~-~-d--------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~t~~-~Dg~i~vwd~~~~~~~ 1044 (1130)
++.++++ . . +.+.++|+.+++.+..+... ....+++|+|||+ ++++.. .++.|.|+|+.+++.+
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 9988864 3 2 36779999999999988765 3688999999998 455555 5899999999999999
Q ss_pred cccCCC
Q 001184 1045 CRIAPS 1050 (1130)
Q Consensus 1045 ~~~~~~ 1050 (1130)
..+...
T Consensus 351 ~~I~vg 356 (368)
T 1mda_H 351 SSVELD 356 (368)
T ss_dssp EECCCC
T ss_pred EEEECC
Confidence 888643
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=9.4e-09 Score=124.19 Aligned_cols=192 Identities=9% Similarity=0.105 Sum_probs=135.1
Q ss_pred CCeEEEEECCCceeEEEEeCCCCC--------------------------------eEEEEEeCCCCcEEEEEeCCC---
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPPPA--------------------------------STFLAFHPQDNNIIAIGMEDS--- 897 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~sp~~~~~lasg~~dg--- 897 (1130)
+|.|+.||..+++.+..+...... ...++++| ++.+|+++..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 578889999988888777542211 13578888 667777777664
Q ss_pred ----------------cEEEEEeecCeEEEEEec--CC-------CCeeEEEEccCC---CeEEEEeCCCcEEEEECCCC
Q 001184 898 ----------------TIQIYNVRVDEVKTKLKG--HQ-------KHITGLAFSTNL---NILVSSGSDAQLIFWNTDTW 949 (1130)
Q Consensus 898 ----------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg---~~L~s~s~Dg~i~vwd~~~~ 949 (1130)
.|..+|..+|+.+-.++. |. ....-+....|| ..++.++.+|.|+++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 499999999998877664 31 112223344577 68999999999999999998
Q ss_pred cccceeeEecc--------CCC---------------------CCCCeEEEEEcCCCcEEEEE-c---------------
Q 001184 950 EKRKSIAIQLP--------AGK---------------------LPVGETRVQFHSDQVRLLVN-H--------------- 984 (1130)
Q Consensus 950 ~~~~~~~~~~~--------~~~---------------------~~~~v~~~~~s~d~~~l~~~-~--------------- 984 (1130)
+.+........ .+. -...-..++++|++.++++. .
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 86543321100 000 00011257889998888763 1
Q ss_pred ----------------------------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 001184 985 ----------------------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVF 1036 (1130)
Q Consensus 985 ----------------------------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vw 1036 (1130)
.+.|..||+.+++.+..+... .++.+..++.++.++++++.||.+++|
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC----CCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 167999999999998877543 345556677788899999999999999
Q ss_pred eCCCcccccccCC
Q 001184 1037 DADSLRLRCRIAP 1049 (1130)
Q Consensus 1037 d~~~~~~~~~~~~ 1049 (1130)
|..+|+.+..+..
T Consensus 504 D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 504 HAATGEKLWEAPT 516 (677)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCceeeeeeC
Confidence 9999999988763
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.13 E-value=9.5e-09 Score=111.83 Aligned_cols=233 Identities=12% Similarity=0.076 Sum_probs=152.0
Q ss_pred CCCccEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEec
Q 001184 407 DSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485 (1130)
Q Consensus 407 ~h~~~V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~ 485 (1130)
.........+|+|+|+ +++++..++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+||.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 4445678899999999 5666677889999987 443 22 3444667799999999998 6666666788999996
Q ss_pred CCCeeeEecCC-----CcCEEEEeecccCCccEEEE----Eec-------------CCcEEEEEccCCcceeeecCCCcc
Q 001184 486 SGRKLFQFEGH-----EAPVYSVCPHQKENIHFIFS----TAV-------------DGKIKAWLYDNVGSRVDYDAPGLW 543 (1130)
Q Consensus 486 ~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s----~s~-------------dg~i~vwd~~~~~~~~~~~~~~~~ 543 (1130)
+|+.. .+..+ ...+..+++. ++|.+.++ |.. .+.|..||..+++..... ....
T Consensus 115 ~g~~~-~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 115 DGQAH-LLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp TSCEE-EEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred CCCEE-EEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 56543 22211 1235567775 46677775 321 245666666544433322 3345
Q ss_pred EEEEEEecCCCeEEEeeecC--CCCcEEEEeeCCCCcee--EEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 544 CTTMLYSADGSRLFSCGTSK--EGDSHLVEWNESEGALK--RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
...++|+||++.|+++.... .+.+.|++|++..+... ..+..........++++++|+. .+++.+ .|.+|+. .
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~ 266 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-D 266 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-T
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-C
Confidence 68899999999887775310 01268999998755421 1221111223446889999984 444444 5999998 5
Q ss_pred CceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
++.+..+..+. .+.+++|+++++.|++++.++..+
T Consensus 267 g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 267 GQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp SCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 77777776544 478999999999998888765443
No 228
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.13 E-value=1e-09 Score=120.63 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=132.6
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~ 428 (1130)
.++.+++++... ++++|+.+ .++||+++..+...... .. . .+......+.. |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~------~~-~--~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSD------ST-P--LTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSS------SC-C--CCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccc------cc-c--ccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 689999999998 68888877 56669986544111000 00 0 00101224556 999999 99999999
Q ss_pred CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCcCEEEEeecc
Q 001184 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQ 507 (1130)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v~~~~~~~ 507 (1130)
.++.|++||+.+-.... ....|...+.++.+.+. -+++++.||.|.+|| .++.... +...|.+++|++
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765332 45667788988887754 278888999999999 5555532 457899999976
Q ss_pred cCCccEEEEEecCCcEEEEEccCCcc--eeee------c---CCCccEEEEEEecCCCeEEEeee
Q 001184 508 KENIHFIFSTAVDGKIKAWLYDNVGS--RVDY------D---APGLWCTTMLYSADGSRLFSCGT 561 (1130)
Q Consensus 508 ~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~~~ 561 (1130)
.+ ++.|..||++++|+.+.... ...+ . .+...|.++.|.+++.++++-..
T Consensus 173 kG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 SQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp SE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred Cc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 44 67899999999999887664 3334 2 35678999999999998887553
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.12 E-value=6.4e-09 Score=125.96 Aligned_cols=192 Identities=17% Similarity=0.200 Sum_probs=132.6
Q ss_pred CCeEEEEECCCceeEEEEeCCC-------------------------------CCeEEEEEeCCCCcEEEEEeCCCc---
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPP-------------------------------PASTFLAFHPQDNNIIAIGMEDST--- 898 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~sp~~~~~lasg~~dg~--- 898 (1130)
+|.|+.||..+|+.+-.+.... .....++++| +..++++++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWD 260 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccc
Confidence 5778888888888877765210 0112578888 6778888887764
Q ss_pred ----------------EEEEEeecCeEEEEEec--CC-------CCeeEEEEccCCC---eEEEEeCCCcEEEEECCCCc
Q 001184 899 ----------------IQIYNVRVDEVKTKLKG--HQ-------KHITGLAFSTNLN---ILVSSGSDAQLIFWNTDTWE 950 (1130)
Q Consensus 899 ----------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~---~L~s~s~Dg~i~vwd~~~~~ 950 (1130)
|..+|.++|+.+-.++. |. .++.-.....+|+ .++.++.+|.++++|..+++
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99999999999887764 22 1222222333665 78899999999999999988
Q ss_pred ccceeeEec------------------------cCCC---------CCCCeEEEEEcCCCcEEEEE-c------------
Q 001184 951 KRKSIAIQL------------------------PAGK---------LPVGETRVQFHSDQVRLLVN-H------------ 984 (1130)
Q Consensus 951 ~~~~~~~~~------------------------~~~~---------~~~~v~~~~~s~d~~~l~~~-~------------ 984 (1130)
.+....... +... -...-..++++|+..++++. .
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 652211100 0000 00011237888888877763 1
Q ss_pred ---------------------------------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 001184 985 ---------------------------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1130)
Q Consensus 985 ---------------------------------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg 1031 (1130)
++.+..||+.+|+.+..+..+ .++....++..+.++++++.||
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~gt~dg 496 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV----TIFNGGTLSTAGNLVFEGSADG 496 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTS
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----CCccCccceECCCEEEEECCCC
Confidence 267999999999998887654 2334446667888999999999
Q ss_pred cEEEEeCCCcccccccCC
Q 001184 1032 SIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 1032 ~i~vwd~~~~~~~~~~~~ 1049 (1130)
.++.||.++|+.+.++..
T Consensus 497 ~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 497 RVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEETTTCCEEEEEEC
T ss_pred cEEEEECCCCccceeeeC
Confidence 999999999999877763
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.12 E-value=2.9e-09 Score=116.90 Aligned_cols=266 Identities=8% Similarity=-0.070 Sum_probs=168.5
Q ss_pred eEEEEEeCcC----eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe--------
Q 001184 361 TLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-------- 428 (1130)
Q Consensus 361 ~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-------- 428 (1130)
+++++-..++ +|.++|..+++.+.. +-.+. .+ .+++||||+++.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~------------------i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGH------------------SLGAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEE------------------EEECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEE------------------EeCCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 4555555455 888999999998863 12233 24 799999999998886
Q ss_pred --CCCeEEEEEecCCccceeeeeeec-C----CCCeeEEEEecCCCceEEEEEc--CCCcEEE--Ee-cCCCeeeEecCC
Q 001184 429 --TKHLIHLYTYQGSNDLCQSLEIDA-H----VGGVNDLAFSYPNKQLCIVTCG--DDKLIRV--WD-LSGRKLFQFEGH 496 (1130)
Q Consensus 429 --~d~~i~vwd~~~~~~~~~~~~~~~-h----~~~V~~i~~s~d~~~l~l~s~s--~d~~v~i--wd-~~~~~~~~~~~h 496 (1130)
.++.|.+||..+++.+.... +.+ . ......++|+|||++ ++.+. .+..|.+ +| .+ +..+.-
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v- 164 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS- 164 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC-
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC-
Confidence 36889999999988665321 210 0 124678999999995 44443 3567888 99 44 444431
Q ss_pred CcCEEEEeecccCCccEEEEEecCCcEEEEEccC----Cccee-----eecCCCccEEEEEEecCCCeEEEeeecCCCCc
Q 001184 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN----VGSRV-----DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1130)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~----~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1130)
.+. ..+.+.+. ..+++.+.||.+.+.|+++ ..... .+.....+. . .+++..++..+. +
T Consensus 165 ~~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 165 ASC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp SSC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred CCc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 111 11223332 3455667888888888876 22221 111122233 3 666776666642 6
Q ss_pred EEEEeeCCCCc--eeEEEecc---------cCceeEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCceeEEEe
Q 001184 568 HLVEWNESEGA--LKRTYIGF---------RKKSAGVVQFDTTRNRILAAGE---------DNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 568 ~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~ 627 (1130)
.+.+.|..++. .+..+.-. .......++++|++++++.+.. ++.+.++|+.+.+.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 78888876532 22221100 0001222679999998887643 2356699999999988887
Q ss_pred ccCCCCCcceEEEcCCCC-EEEEEe-CCCcEEEEEcCCCchhhhhh
Q 001184 628 AEGGLPSLPRLRFNKEGN-LLVVTT-ADQGIKILANADGLRALRAI 671 (1130)
Q Consensus 628 ~~~~~~~i~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~ 671 (1130)
... ....++|+|||+ ++++.. .++.|.++|+.+. +..+.+
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I 353 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSV 353 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEEC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEE
Confidence 654 468999999997 556666 5899999999887 444433
No 231
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.10 E-value=5e-08 Score=107.06 Aligned_cols=223 Identities=14% Similarity=0.050 Sum_probs=144.0
Q ss_pred EEEEEEcCCCC-EEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCe
Q 001184 412 VSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK 489 (1130)
Q Consensus 412 V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~ 489 (1130)
..+.+|+|++. ++++...++.|..||..+++.. .+. ....+.+++|+++|+ ++++. . ..|.+|| .+++.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~-~~~~v~~i~~~~dg~--l~v~~-~-~gl~~~d~~~g~~ 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT----VHA-LPFMGSALAKISDSK--QLIAS-D-DGLFLRDTATGVL 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEE-CSSCEEEEEEEETTE--EEEEE-T-TEEEEEETTTCCE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEE-CCCcceEEEEeCCCe--EEEEE-C-CCEEEEECCCCcE
Confidence 45788999855 5566667889999999886532 122 345799999999998 55554 3 3499999 55554
Q ss_pred eeEecCC-----CcCEEEEeecccCCccEEEEEecC----CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEee
Q 001184 490 LFQFEGH-----EAPVYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 490 ~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
. .+... ...+..+++++ ++.++++...+ +...+|.++. .....+.........++|+|||+.++.+.
T Consensus 122 ~-~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 122 T-LHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVAK-GKVTKLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp E-EEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEET-TEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred E-EEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEeC-CcEEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence 3 33221 23577888865 55665544322 2334444443 22222222223467899999999877664
Q ss_pred ecCCCCcEEEEeeCC--CC-cee--EEEec--ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCC
Q 001184 561 TSKEGDSHLVEWNES--EG-ALK--RTYIG--FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~--~~-~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 633 (1130)
. ..+.|++||.. ++ ... +.+.. ........++++++|+++++...++.|.+||. +++.+..+..+..
T Consensus 198 ~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~-- 271 (326)
T 2ghs_A 198 T---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK-- 271 (326)
T ss_dssp T---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS--
T ss_pred C---CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC--
Confidence 2 26789999975 55 321 22221 11235667899999987777767789999998 6777777665432
Q ss_pred CcceEEEc-CCCCEEEEEeCC
Q 001184 634 SLPRLRFN-KEGNLLVVTTAD 653 (1130)
Q Consensus 634 ~i~~v~~s-~~~~~l~~~~~d 653 (1130)
.+.+++|+ +++..|++++..
T Consensus 272 ~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEBC
T ss_pred CcEEEEEecCCCCEEEEEecC
Confidence 58899998 888877666544
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.09 E-value=2.3e-08 Score=120.83 Aligned_cols=327 Identities=13% Similarity=0.079 Sum_probs=189.9
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCCcc-----------EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW-----------CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
..++.++.++.|..+|..+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 46777777888888888888887766544220 112233 4556766654 889999999999999
Q ss_pred EEEecc-cC---ceeE-EEEEcCCCCEEEEEeC------CCcEEEEeCCCCceeEEEeccCCC-----------------
Q 001184 581 RTYIGF-RK---KSAG-VVQFDTTRNRILAAGE------DNQIKFWDMDNVNMLTSTEAEGGL----------------- 632 (1130)
Q Consensus 581 ~~~~~~-~~---~~v~-~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~----------------- 632 (1130)
..+... .. ..+. ...+ .+..+++++. ++.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 888754 10 1111 1111 2355666553 699999999999998877653221
Q ss_pred -------------CCcceEEEcCCCCEEEEEeCCCc-------------------EEEEEcCCCchhhhhhccccccccc
Q 001184 633 -------------PSLPRLRFNKEGNLLVVTTADQG-------------------IKILANADGLRALRAIETRAYETSR 680 (1130)
Q Consensus 633 -------------~~i~~v~~s~~~~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1130)
.....++++|++..+++++.++. |..+|..++.
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~--------------- 294 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK--------------- 294 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC---------------
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC---------------
Confidence 01135788888888888876653 3333333221
Q ss_pred ccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEe
Q 001184 681 ASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAM 760 (1130)
Q Consensus 681 ~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 760 (1130)
.+|.........-
T Consensus 295 -------------------------------------------------------------~~W~~~~~~~d~w------ 307 (677)
T 1kb0_A 295 -------------------------------------------------------------YKWHYQETPGDNW------ 307 (677)
T ss_dssp -------------------------------------------------------------EEEEEESSTTCCS------
T ss_pred -------------------------------------------------------------EEEEEecCCCccc------
Confidence 1232221000000
Q ss_pred cCCCCCccceEEEEEeccC---CeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCccee-----------c
Q 001184 761 PESTDSASKVARLLYTNSG---IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMT-----------N 826 (1130)
Q Consensus 761 ~~~~~~~~~i~~l~~s~~g---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-----------~ 826 (1130)
. -.......-+....+| ..++.++.+|.+.++|..+++..-........-..-+| .+++.+. .
T Consensus 308 -d-~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~~~~~~~ 384 (677)
T 1kb0_A 308 -D-YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD-KHGKPIGIAAARDGSKPQD 384 (677)
T ss_dssp -C-CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC-TTSCEEECGGGGCTTSCEE
T ss_pred -c-cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC-CCCceeeccccCcCCCccE
Confidence 0 0001112222333466 56777888899988887665431100000000000012 2222211 0
Q ss_pred cCCC--CCCCceeEEEEecCCCEEEEEe-C-------------------------------------------CeEEEEE
Q 001184 827 DVPE--NAEDVVPCVALSKNDSYVMSAG-G-------------------------------------------GKVSLFN 860 (1130)
Q Consensus 827 ~~~~--~~~~~i~~l~~s~dg~~la~~~-d-------------------------------------------g~i~iwd 860 (1130)
..+. +... -..++++|++.++++.. + |.|..||
T Consensus 385 ~~P~~~G~~~-w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D 463 (677)
T 1kb0_A 385 AVPGPYGAHN-WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD 463 (677)
T ss_dssp CSSCTTCSSC-SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred ECcCcccccC-CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence 0111 1111 13678899888887643 1 6799999
Q ss_pred CCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCC-CCeeEEEEccCCCeEEE
Q 001184 861 MMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ-KHITGLAFSTNLNILVS 934 (1130)
Q Consensus 861 ~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s 934 (1130)
+.+++.+..+... ..+....++. ++.++++++.||.+++||..+++.+.++.... ....-+.|..+|+.++.
T Consensus 464 ~~tG~~~W~~~~~-~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 464 PVAQKAAWSVEHV-SPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TTTTEEEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCcEEeecCCC-CCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 9999998887643 3344445566 56678889999999999999999999887443 23345667788875554
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.09 E-value=6.5e-08 Score=108.91 Aligned_cols=307 Identities=11% Similarity=0.040 Sum_probs=181.0
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCC---------ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEE
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1130)
..++.++.++.|..+|.++++......... ..+.+.. ..++..+++++. ++.|+.+|..+|+.+..
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~----~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSE----KAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEET----TSEEEEEETTTCCEEEE
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcC----CCEEEEEECCCCCEEEE
Confidence 577888888999999998888876655432 2232222 223456666654 78999999999998877
Q ss_pred EecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCC---cceEEEcCCCCEEEEEeCCCcEEEE
Q 001184 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS---LPRLRFNKEGNLLVVTTADQGIKIL 659 (1130)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---i~~v~~s~~~~~l~~~~~dg~i~iw 659 (1130)
+..... ........ +..+++++.++.|+.+|..+|+.+........... ....... +..+++++.++.+..+
T Consensus 129 ~~~~~~-~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 129 TKVAGE-ALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp EECSSC-CCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred EeCCCc-eEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 664322 11112222 45888899999999999999998877765432100 0122222 4467788889999999
Q ss_pred EcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCC
Q 001184 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISD 739 (1130)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 739 (1130)
|..++....+.-... |. +
T Consensus 204 d~~tG~~~w~~~~~~-----------------------~~---------------------------------------~ 221 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQ-----------------------AT---------------------------------------G 221 (376)
T ss_dssp ETTTCCEEEEEECCC-----------------------------------------------------------------
T ss_pred ECCCCcEEEEEeccc-----------------------CC---------------------------------------C
Confidence 988773322110000 00 0
Q ss_pred CccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCC
Q 001184 740 KTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819 (1130)
Q Consensus 740 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 819 (1130)
...+..+.. .....+ + .+..+++++.++.+..+|..
T Consensus 222 ~~~~~~~~~----------------~~~~p~----~--~~~~v~~~~~~g~l~~~d~~---------------------- 257 (376)
T 3q7m_A 222 STEIDRLSD----------------VDTTPV----V--VNGVVFALAYNGNLTALDLR---------------------- 257 (376)
T ss_dssp --------C----------------CCCCCE----E--ETTEEEEECTTSCEEEEETT----------------------
T ss_pred Ccccccccc----------------cCCCcE----E--ECCEEEEEecCcEEEEEECC----------------------
Confidence 000000000 000000 0 13445666666777666543
Q ss_pred CCcceeccCCCCCCCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeC-CCCCeEEEEEeCCCCcEEEEEeCCC
Q 001184 820 NGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGMEDS 897 (1130)
Q Consensus 820 ~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg 897 (1130)
+|+...... ......+.. ++..+.++. ++.|..+|..+++.+..... ........... +..|++++.+|
T Consensus 258 tG~~~w~~~----~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g 328 (376)
T 3q7m_A 258 SGQIMWKRE----LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSEG 328 (376)
T ss_dssp TCCEEEEEC----CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTTS
T ss_pred CCcEEeecc----CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCCC
Confidence 233222111 112233333 344555555 78999999999998877662 22233334443 24677888999
Q ss_pred cEEEEEeecCeEEEEEecCCCCeeE-EEEccCCCeEEEEeCCCcEEEEE
Q 001184 898 TIQIYNVRVDEVKTKLKGHQKHITG-LAFSTNLNILVSSGSDAQLIFWN 945 (1130)
Q Consensus 898 ~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~L~s~s~Dg~i~vwd 945 (1130)
.|+++|..+++.+.........+.+ ... .+..|+.++.+|.|..|+
T Consensus 329 ~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 329 YLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred eEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 9999999999988877654444432 222 256788899999999886
No 234
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.09 E-value=6.8e-05 Score=88.91 Aligned_cols=526 Identities=9% Similarity=-0.017 Sum_probs=271.4
Q ss_pred CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEe-CCCeEEEEEecCCcccee
Q 001184 368 GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-TKHLIHLYTYQGSNDLCQ 446 (1130)
Q Consensus 368 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~-~d~~i~vwd~~~~~~~~~ 446 (1130)
....|+..|+........ .....-..+..++|++.+..|..+. ..+.|..+++.+.....
T Consensus 16 ~~~~I~~i~~~~~~~~~~------------------~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~- 76 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ- 76 (619)
T ss_dssp CSSBEEEECCC---------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE-
T ss_pred ccccEEEEeCCCCcceEE------------------EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE-
Confidence 456888888875431110 1122334578999999777666554 46788889987653211
Q ss_pred eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEeecccCCccEEEEE-ecCCcEE
Q 001184 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFST-AVDGKIK 524 (1130)
Q Consensus 447 ~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~ 524 (1130)
..+.........+++.+.++. +.++-...+.|.+.+.+|.....+. ..-.....+++.|.. +.++++- +..+.|.
T Consensus 77 -~v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~ 153 (619)
T 3s94_A 77 -NVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIE 153 (619)
T ss_dssp -EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEE
T ss_pred -EEEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEE
Confidence 122323356889999997664 5566677889999997777655554 344556778886543 3344443 2245676
Q ss_pred EEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEE
Q 001184 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRIL 604 (1130)
Q Consensus 525 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1130)
..+++.................+++++++..|+.+-. ..+.|...|+..........+... ....+++..+ .++
T Consensus 154 r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~--~ly 227 (619)
T 3s94_A 154 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED--ILY 227 (619)
T ss_dssp EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---TTCCEEEESSSCCEEC----------CCCEEESSS--EEE
T ss_pred EEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---CCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC--EEE
Confidence 6676654444444344557899999998888887743 367899998865433332221111 2234566544 444
Q ss_pred EE-eCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccc
Q 001184 605 AA-GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAS 682 (1130)
Q Consensus 605 ~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1130)
.+ ...+.|...|..+++....+..... ....+.+ +|..+- .+ .. .+...-.+..
T Consensus 228 ~td~~~~~V~~~d~~tg~~~~~i~~~~~--~p~~i~v~~~~~qp--~~------------~n-~C~~~ng~Cs------- 283 (619)
T 3s94_A 228 WTDWSTHSILACNKYTGEGLREIHSDIF--SPMDIHAFSQQRQP--NA------------TN-PCGIDNGGCS------- 283 (619)
T ss_dssp EECTTTCSEEEEESSSCCCCEECCSCCC--CCSEEEECCGGGSC--CC------------CC-TTTTTGGGCS-------
T ss_pred EecCCCCEEEEEECCCCcccEEEecCCC--CCcEEEEEccccCC--Cc------------cc-cccCCCCccc-------
Confidence 44 4567888888888776555432211 2223322 111000 00 00 0000000000
Q ss_pred ccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecC
Q 001184 683 TEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPE 762 (1130)
Q Consensus 683 ~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 762 (1130)
.....+|.. ..-....+.+-.+. .|+.. |.
T Consensus 284 ---------~lCl~~~~~-------------------~~~~C~C~~g~~l~---~d~~~-------------C~------ 313 (619)
T 3s94_A 284 ---------HLCLMSPVK-------------------PFYQCACPTGVKLL---ENGKT-------------CK------ 313 (619)
T ss_dssp ---------SEEEECSST-------------------TSEEEECCTTCCBC---TTSSC-------------BC------
T ss_pred ---------ceEECCCCC-------------------CCceEeCCchheec---ccCcc-------------cC------
Confidence 000001100 00000000000000 00000 00
Q ss_pred CCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEe
Q 001184 763 STDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS 842 (1130)
Q Consensus 763 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s 842 (1130)
+....++..+..+.|+..++...... ... ++-..-..+.+++++
T Consensus 314 --------------~~~~~~Ll~~~~~~i~~i~l~~~~~~--------------------~~~--~~~~~l~~~~~ld~d 357 (619)
T 3s94_A 314 --------------DGATELLLLARRTDLRRISLDTPDFT--------------------DIV--LQLEDIRHAIAIDYD 357 (619)
T ss_dssp --------------SSCSEEEEEEESSCEEEEESSSTTCC--------------------CEE--CCCSCCSSEEEEEEE
T ss_pred --------------CCCceEEEEEcccceEEEecCCCccc--------------------eeE--EeccccCccEEEEEE
Confidence 00111222223344544443321110 000 000123457789999
Q ss_pred cCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCe
Q 001184 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI 920 (1130)
Q Consensus 843 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 920 (1130)
+.+..|..+. .+.|+.+++.+......+...-.....+++.+.++++..+-+..+.|.+.++........+...-...
T Consensus 358 ~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P 437 (619)
T 3s94_A 358 PVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEP 437 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSE
T ss_pred cCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCe
Confidence 8766666665 68899999887544444444445677899987456666666667889999887553322233344568
Q ss_pred eEEEEccCCCeEEEEeC--CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEECCCc
Q 001184 921 TGLAFSTNLNILVSSGS--DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKM 996 (1130)
Q Consensus 921 ~~l~~s~dg~~L~s~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~ 996 (1130)
.+|++.|....|..+.. ...|...+++..... . +. .. .-.....+++++++..|..+ ..+.|..+++...
T Consensus 438 ~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~-~--l~--~~-~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 438 RAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV-V--LV--NT-SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-E--EE--CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred eeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE-E--EE--eC-CCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 89999997556655543 356666666643211 1 11 11 11456789999877777764 4567888888643
Q ss_pred eeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcc
Q 001184 997 ECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLR 1042 (1130)
Q Consensus 997 ~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~ 1042 (1130)
.......... ....++++..+ +|+.+. ..+.|...|..+|.
T Consensus 512 ~~~~~~~~~l---~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 512 GRRVLVEDKI---PHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp CCEEEEECCC---CSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred ceEEEeccCC---CCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence 3322222221 22235555433 454444 45667777777763
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.07 E-value=2.6e-08 Score=120.59 Aligned_cols=82 Identities=10% Similarity=0.046 Sum_probs=61.0
Q ss_pred CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCe-eEEEEccCCCeE
Q 001184 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI-TGLAFSTNLNIL 932 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~L 932 (1130)
|.|..||+.+++.+..+..+.. ...-.++. .+.++++|+.||.|+.||.++|+.+.+++...+.+ .-+.|..||+..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 6799999999999988875543 22234555 56688899999999999999999998887554332 457788888744
Q ss_pred -EEEeC
Q 001184 933 -VSSGS 937 (1130)
Q Consensus 933 -~s~s~ 937 (1130)
++.+.
T Consensus 533 v~~~~G 538 (689)
T 1yiq_A 533 VTFMAG 538 (689)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 44443
No 236
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.05 E-value=4.3e-05 Score=90.60 Aligned_cols=525 Identities=10% Similarity=0.038 Sum_probs=272.0
Q ss_pred CCeEEEEEecCCc-cceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCe--eeEecCCCcCEEEEeec
Q 001184 430 KHLIHLYTYQGSN-DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK--LFQFEGHEAPVYSVCPH 506 (1130)
Q Consensus 430 d~~i~vwd~~~~~-~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~--~~~~~~h~~~v~~~~~~ 506 (1130)
...|+..|+.+.. ... .+......+..++|.+.+.. ++++-...+.|..++.+|.. ...+...-.....+++.
T Consensus 17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 4568888887542 111 12223445789999997774 44555567788888855542 22333333567888886
Q ss_pred ccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecc
Q 001184 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586 (1130)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1130)
+. ++.+.++-...+.|.+.+++.................+++.|.+.+|+.+-. ...+.|...++. |.....+...
T Consensus 93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~d-G~~~~~l~~~ 168 (619)
T 3s94_A 93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMD-GSSRFIIINS 168 (619)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETT-SCSCEEEECS
T ss_pred ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECC-CCceEEEEeC
Confidence 53 3356666677889999998865544444344445778999998777666532 124677777765 3333333322
Q ss_pred cCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001184 587 RKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1130)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 665 (1130)
.-.....++++++++.|+.+. ..+.|...|++........... ......+++..+ .+.++-...+.|...|..++.
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 233567799999877776664 4678999998765443333211 113467777665 344444456778888876663
Q ss_pred hhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCcccee
Q 001184 666 RALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWE 745 (1130)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~ 745 (1130)
.. ..+..... ...++ ..+.|. +. | .+
T Consensus 246 ~~-~~i~~~~~----------~p~~i--~v~~~~--------~q-p----------------~~---------------- 271 (619)
T 3s94_A 246 GL-REIHSDIF----------SPMDI--HAFSQQ--------RQ-P----------------NA---------------- 271 (619)
T ss_dssp CC-EECCSCCC----------CCSEE--EECCGG--------GS-C----------------CC----------------
T ss_pred cc-EEEecCCC----------CCcEE--EEEccc--------cC-C----------------Cc----------------
Confidence 21 11111000 00000 011111 00 0 00
Q ss_pred eccccCCcceeEEEecCCCCCccceEEEEEe-ccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcce
Q 001184 746 LTEIVDPLQCRVVAMPESTDSASKVARLLYT-NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824 (1130)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 824 (1130)
...| ....+.+..+++. |......+....|.. +
T Consensus 272 ------~n~C--------~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~--------------------------------l 305 (619)
T 3s94_A 272 ------TNPC--------GIDNGGCSHLCLMSPVKPFYQCACPTGVK--------------------------------L 305 (619)
T ss_dssp ------CCTT--------TTTGGGCSSEEEECSSTTSEEEECCTTCC--------------------------------B
T ss_pred ------cccc--------cCCCCcccceEECCCCCCCceEeCCchhe--------------------------------e
Confidence 0000 0001111112221 111101111111110 0
Q ss_pred eccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEE-EEe-CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEE
Q 001184 825 TNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMT-TFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIY 902 (1130)
Q Consensus 825 ~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~-~~~-~~~~~i~~l~~sp~~~~~lasg~~dg~v~iw 902 (1130)
. ....+|. .....+|+.+..+.|+..++....... .+. ..-..+.+++|.+.++.++.+-...+.|+.+
T Consensus 306 ~-------~d~~~C~--~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~ 376 (619)
T 3s94_A 306 L-------ENGKTCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRS 376 (619)
T ss_dssp C-------TTSSCBC--SSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred c-------ccCcccC--CCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEE
Confidence 0 0001111 112346666667788888887653221 121 1234578899998555555555567889988
Q ss_pred EeecCeEEEEEecCCCCeeEEEEccCCCeEE-EEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEE
Q 001184 903 NVRVDEVKTKLKGHQKHITGLAFSTNLNILV-SSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981 (1130)
Q Consensus 903 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 981 (1130)
++........+........+|++...+..|. +-+..+.|.+.+++.... .. +. .. .-.....+++.|...+|.
T Consensus 377 ~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~-~~--l~--~~-~l~~P~~iavdp~~G~ly 450 (619)
T 3s94_A 377 FIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR-KI--LI--SE-DLEEPRAIVLDPMVGYMY 450 (619)
T ss_dssp ETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE--EE--CT-TCCSEEEEEEETTTTEEE
T ss_pred EcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE-EE--EE--EC-CCCCeeeEEEEcCCCcEE
Confidence 8875443333443445678999987555554 445578899999876422 11 11 11 125678999999755555
Q ss_pred EEc---CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeCCCcccccccCCCcccccCC
Q 001184 982 VNH---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1130)
Q Consensus 982 ~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1130)
.++ ...|...+++. .....+.... -...+.++++++++.|+.+.. .+.|...++........+....
T Consensus 451 ~tD~g~~~~I~r~~~dG-~~~~~l~~~~--l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l------ 521 (619)
T 3s94_A 451 WTDWGEIPKIERAALDG-SDRVVLVNTS--LGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKI------ 521 (619)
T ss_dssp EEECSSSCEEEEEETTS-CSCEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCC------
T ss_pred EecCCCCCEEEEEccCC-CccEEEEeCC--CCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCC------
Confidence 533 35676666653 3222232211 346789999997777776654 4789999987544322211111
Q ss_pred CCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1058 PNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
.+ ...+++ . ++.++++-...+.|..-+..++.
T Consensus 522 --~~-P~glav--~--~~~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 522 --PH-IFGFTL--L--GDYVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp --CS-SCCEEE--E--TTEEEEECTTSSCEEEEESSSCC
T ss_pred --CC-cEEEEE--E--CCEEEEeecCCCeEEEEEcCCCc
Confidence 11 112223 2 23444444446667777766663
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.04 E-value=6.7e-08 Score=105.83 Aligned_cols=237 Identities=12% Similarity=0.069 Sum_probs=152.4
Q ss_pred ccCCeEEEeee-CCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEe-C-
Q 001184 777 NSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-G- 853 (1130)
Q Consensus 777 ~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-d- 853 (1130)
.+++++++.+. ++.|.++|+.+....+.-..... ..++.. ......-..+..+||| +++++. +
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie---------~~~~~~----~~g~s~Ph~~~~~pdG-i~Vs~~g~~ 158 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIE---------PEEVKK----VSGYSRLHTVHCGPDA-IYISALGNE 158 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEEC---------HHHHHH----HHCEEEEEEEEECSSC-EEEEEEEET
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeec---------hhhccc----ccCCCcccceeECCCe-EEEEcCCCc
Confidence 77888887665 78899998764332221111000 000000 0011234567888999 555543 3
Q ss_pred -----CeEEEEECCCceeEEEEeCCCC---CeEEEEEeCCCCcEEEEEe-------------------CCCcEEEEEeec
Q 001184 854 -----GKVSLFNMMNFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGM-------------------EDSTIQIYNVRV 906 (1130)
Q Consensus 854 -----g~i~iwd~~~~~~~~~~~~~~~---~i~~l~~sp~~~~~lasg~-------------------~dg~v~iwd~~~ 906 (1130)
|.|.++|..+++.+.++..... --..+.|+| +++.+++.. .+.+|.+||+.+
T Consensus 159 ~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 159 EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 6899999999999999873222 234578899 777777774 368999999999
Q ss_pred CeEEEEEecC-C-CCeeEEEE--ccCCCeEEEEeC------CCcEEEEECCCCcccceeeEeccCCC----C--------
Q 001184 907 DEVKTKLKGH-Q-KHITGLAF--STNLNILVSSGS------DAQLIFWNTDTWEKRKSIAIQLPAGK----L-------- 964 (1130)
Q Consensus 907 ~~~~~~l~~h-~-~~V~~l~~--s~dg~~L~s~s~------Dg~i~vwd~~~~~~~~~~~~~~~~~~----~-------- 964 (1130)
++.+.++..- . .....+.| +|+++++.+++. +++|.+|..+.++......+...... .
T Consensus 238 ~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~ 317 (462)
T 2ece_A 238 RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK 317 (462)
T ss_dssp TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence 9888887653 1 23345555 999999888774 56888877665432222222111110 0
Q ss_pred --CCCeEEEEEcCCCcEEEEEc--CCcEEEEECC---CceeeeeeecCCC-----------CCCCeEEEEECCCCCEEEE
Q 001184 965 --PVGETRVQFHSDQVRLLVNH--ETQLAIYDGS---KMECIRQWVPQDV-----------LSSPISSAAYSCNSQLIYA 1026 (1130)
Q Consensus 965 --~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~---~~~~~~~~~~~~~-----------~~~~v~~v~~s~dg~~l~t 1026 (1130)
......+.+|+||++|.++. .+.|.+||+. +.+.+..+..... ....-..+++||||++|++
T Consensus 318 ~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyV 397 (462)
T 2ece_A 318 AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYV 397 (462)
T ss_dssp EECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEE
T ss_pred cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEE
Confidence 24578899999999999964 6789999986 3455555544310 0113578999999999998
Q ss_pred Ee
Q 001184 1027 TF 1028 (1130)
Q Consensus 1027 ~~ 1028 (1130)
+.
T Consensus 398 aN 399 (462)
T 2ece_A 398 TN 399 (462)
T ss_dssp EC
T ss_pred Ec
Confidence 87
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.00 E-value=2.1e-08 Score=110.66 Aligned_cols=301 Identities=12% Similarity=0.077 Sum_probs=180.6
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec
Q 001184 459 DLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD 538 (1130)
Q Consensus 459 ~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 538 (1130)
++.+..++. +..++.++.|..||.+++.+..+..+...+.++... .++ .++.++.+ +..+|. +++....+.
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~--~~g-~l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIG--KDG-TIYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEECTTSCEEESSCGGGEEEECCEET--TTT-EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred CceEccCCe---EEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEe--cCC-cEEEecCc--EEEECC-CCcEEEEEE
Confidence 344545665 677778888999997777766555444444555542 343 45555554 777775 444443333
Q ss_pred CCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
..........+. +..+.+++. ++.|+.+|.. ++....+..... .+.++...+++. ++.++.++.|..+|..
T Consensus 95 ~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 95 TKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINPD 165 (330)
T ss_dssp C-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred CCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence 333222233333 444555543 7789999988 777666654332 455566666665 6667888999999998
Q ss_pred CCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeecccc
Q 001184 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1130)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1130)
++.+........ .+.++...+++.+.+ ++ +.|..++ .++..
T Consensus 166 -g~~~~~~~~~~~--~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~-------------------------------- 206 (330)
T 3hxj_A 166 -GTEKWRFKTNDA--ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE-------------------------------- 206 (330)
T ss_dssp -SCEEEEEECSSC--CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE--------------------------------
T ss_pred -CCEeEEEecCCC--ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE--------------------------------
Confidence 877766654433 566777777776444 44 6677776 33310
Q ss_pred ccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEecc
Q 001184 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1130)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1130)
+|...
T Consensus 207 --------------------------------------------~~~~~------------------------------- 211 (330)
T 3hxj_A 207 --------------------------------------------KWNFY------------------------------- 211 (330)
T ss_dssp --------------------------------------------EEEEC-------------------------------
T ss_pred --------------------------------------------EEEEc-------------------------------
Confidence 01000
Q ss_pred CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEE
Q 001184 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSL 858 (1130)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~i 858 (1130)
.....+.++++.++|.+.+...++.|..
T Consensus 212 ----------------------------------------------------~~~~~~~~~~~~~~g~l~v~t~~~gl~~ 239 (330)
T 3hxj_A 212 ----------------------------------------------------AGYWTVTRPAISEDGTIYVTSLDGHLYA 239 (330)
T ss_dssp ----------------------------------------------------CSSCCCSCCEECTTSCEEEEETTTEEEE
T ss_pred ----------------------------------------------------cCCcceeceEECCCCeEEEEcCCCeEEE
Confidence 0012234455566666555545677777
Q ss_pred EECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCC
Q 001184 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938 (1130)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 938 (1130)
+|. +++.+..+......+..+.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|+ |..++.+
T Consensus 240 ~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~ 314 (330)
T 3hxj_A 240 INP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRN 314 (330)
T ss_dssp ECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTT
T ss_pred ECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCC
Confidence 764 4455555554444444556655 45 4556888888999995 6777777766666778888877775 5568889
Q ss_pred CcEEEEECCC
Q 001184 939 AQLIFWNTDT 948 (1130)
Q Consensus 939 g~i~vwd~~~ 948 (1130)
|.+++...+.
T Consensus 315 G~~~~~~~~~ 324 (330)
T 3hxj_A 315 GKFYALFNLE 324 (330)
T ss_dssp SCEEEEEC--
T ss_pred CeEEEEeccc
Confidence 9998877665
No 239
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.00 E-value=0.00019 Score=85.08 Aligned_cols=511 Identities=10% Similarity=0.012 Sum_probs=259.2
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
.-..+..++|++.+..+..+-..++.|..++++...... +..........+++.+.+..|.
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY 95 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLY 95 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEE
Confidence 345789999999877777777778899999987643321 1222223567899988766554
Q ss_pred E-EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEE-cCCCcEEEEecCCCeeeEecCCCcCEEEE
Q 001184 426 V-AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-GDDKLIRVWDLSGRKLFQFEGHEAPVYSV 503 (1130)
Q Consensus 426 s-~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~-s~d~~v~iwd~~~~~~~~~~~h~~~v~~~ 503 (1130)
. -...+.|.+.++.+... .. .+...-....+|++.|.... ++++- +..+.|...+.+|.....+...-.....+
T Consensus 96 ~tD~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Gl 171 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHR-QV--LVWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGL 171 (628)
T ss_dssp EEETTTTEEEEEETTSTTC-EE--EECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEE
T ss_pred EEECCCCEEEEEecCCCcE-EE--EEeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceE
Confidence 4 45567899999876532 11 12233445789999986664 33333 33567777777777666555455667888
Q ss_pred eecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
++.+.. +.+.++-...+.|...|++...... +.........+++.. ..++.+-. ..+.|...|..+++....+
T Consensus 172 alD~~~-~~LY~aD~~~~~I~~~d~dG~~~~v-~~~~l~~P~glav~~--~~ly~tD~---~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 172 TIDYAK-RRLYWTDLDTNLIESSNMLGLNREV-IADDLPHPFGLTQYQ--DYIYWTDW---SRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEETTT-TEEEEEETTTTEEEEEETTSCSCEE-EEECCSCEEEEEEET--TEEEEEET---TTTEEEEEETTTCCSCEEE
T ss_pred EEcccc-CEEEEEECCCCEEEEEcCCCCceEE-eeccCCCceEEEEEC--CEEEEecC---CCCEEEEEECCCCCceEEE
Confidence 886533 3444555667889999987654432 222233455777764 34444432 2678888887777666555
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEcC
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~-s~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
......+.....+++..+. +.+.. ...++ ....++. .|.+.+ .+.+..|...-.|
T Consensus 245 ~~~~~~p~~i~v~~~~~q~----~~n~C----~~~ng-------------~C~~~C~~~~~~~~-~C~C~~g~~l~~d-- 300 (628)
T 4a0p_A 245 QGHLDYVMDILVFHSSRQS----GWNEC----ASSNG-------------HCSHLCLAVPVGGF-VCGCPAHYSLNAD-- 300 (628)
T ss_dssp ECSCCSCCEEEEECGGGSC----CCCTT----TTTGG-------------GCSSEEEEETTTEE-EEECSTTCEECTT--
T ss_pred ecCCCCcceeeeeeecccc----cceEe----ccCCC-------------CcchhhhcCCCCCe-eEEcCCCcEeccc--
Confidence 4332212222223322110 00000 00000 0011111 111111 1111222110000
Q ss_pred CCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCcc
Q 001184 663 DGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTK 742 (1130)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 742 (1130)
+..+.. +. ..++.+. ...++
T Consensus 301 -~~~C~~----------------------------~~------------------------------~~Ll~s~-~~~i~ 320 (628)
T 4a0p_A 301 -NRTCSA----------------------------PT------------------------------TFLLFSQ-KSAIN 320 (628)
T ss_dssp -SSCEEC----------------------------CS------------------------------SEEEEEE-TTEEE
T ss_pred -CCcCcc----------------------------cc------------------------------ceeeeec-cceEE
Confidence 000000 00 0000000 00000
Q ss_pred ceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee-CCeEEeeecCCCCCCCCcccccccccccccCCCC
Q 001184 743 PWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1130)
Q Consensus 743 ~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1130)
...+.... .....++. .....+.+++|.+....|+.+.. .+.|..+++..... .
T Consensus 321 ~i~l~~~~----~~~~~l~~--~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------------------~ 375 (628)
T 4a0p_A 321 RMVIDEQQ----SPDIILPI--HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------------------F 375 (628)
T ss_dssp EECCCTTC----CCCEECCC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------------E
T ss_pred EEeccccc----CceEEEEe--hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------------------e
Confidence 00000000 00000110 12244678888887776666543 56666554321100 0
Q ss_pred cceeccCC-CCCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCC-
Q 001184 822 LLMTNDVP-ENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS- 897 (1130)
Q Consensus 822 ~~~~~~~~-~~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg- 897 (1130)
..+..... ......+..+++...++.|..+. .+.|.+.++........+.........+++.|..+.++.+-....
T Consensus 376 ~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~ 455 (628)
T 4a0p_A 376 TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERS 455 (628)
T ss_dssp EEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTE
T ss_pred EEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCC
Confidence 00000000 01234678999999888776555 578999998654332333344567899999995555554433222
Q ss_pred -cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeC-CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcC
Q 001184 898 -TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 898 -~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
.|...+++...........-...+.|++.++++.|..+.. .+.|...+++.... ... ..... .....+++..
T Consensus 456 ~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r-~~~--~~~~~---~~P~glav~~ 529 (628)
T 4a0p_A 456 PKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR-IVL--EDSNI---LQPVGLTVFE 529 (628)
T ss_dssp EEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSSC---SCEEEEEEET
T ss_pred CeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce-EEE--EcCCC---CCcEEEEEEC
Confidence 4555555433222223333445789999998888877765 57888999865332 111 11111 2345566554
Q ss_pred CCcEEEE-EcCCcEEEEECCCceeeeee
Q 001184 976 DQVRLLV-NHETQLAIYDGSKMECIRQW 1002 (1130)
Q Consensus 976 d~~~l~~-~~d~~i~v~d~~~~~~~~~~ 1002 (1130)
+.+..+ ...+.|...|..+|+....+
T Consensus 530 -~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 530 -NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp -TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred -CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 333333 34566777777766654444
No 240
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.98 E-value=1.3e-07 Score=106.43 Aligned_cols=285 Identities=11% Similarity=0.022 Sum_probs=169.1
Q ss_pred CCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEE
Q 001184 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSL 858 (1130)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~i 858 (1130)
+..+++++.++.+..+|..+++ .+|....+.... ........+.+.....++..++...++.|..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~-------------~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a 117 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGK-------------EIWSVSLAEKDG--WFSKEPALLSGGVTVSGGHVYIGSEKAQVYA 117 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCC-------------EEEEEECCC-----CCSCCCCCEEEEEEEETTEEEEEETTSEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCc-------------eeeeecCccccc--cccccCcccccCceEeCCEEEEEcCCCEEEE
Confidence 5667777778888777654322 123221110000 0000022233332333444444444899999
Q ss_pred EECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCe-----eEEEEccCCCeEE
Q 001184 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI-----TGLAFSTNLNILV 933 (1130)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-----~~l~~s~dg~~L~ 933 (1130)
+|..+++.+................ ++ .+++++.++.|+.+|..+++.+.......... ...... +..++
T Consensus 118 ~d~~tG~~~W~~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~ 192 (376)
T 3q7m_A 118 LNTSDGTVAWQTKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAV 192 (376)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEE
T ss_pred EECCCCCEEEEEeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEE
Confidence 9999999887776543322223333 33 67778899999999999999887765432211 122222 45777
Q ss_pred EEeCCCcEEEEECCCCcccceeeEeccCCCCC-CC---eEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCC
Q 001184 934 SSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP-VG---ETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLS 1009 (1130)
Q Consensus 934 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~---v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 1009 (1130)
.++.++.|..+|..+++..-......+..... .. +.......++..++.+.++.+..+|..+|+.+......
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~---- 268 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG---- 268 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----
Confidence 88889999999999877643332221111000 00 00001112455555567899999999999987665432
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEE
Q 001184 1010 SPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1089 (1130)
Q Consensus 1010 ~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~v 1089 (1130)
....+.. ++..|++++.++.|..+|..+|+.+-....... .......+. +..|++++.+|.|..
T Consensus 269 -~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~--------~~~~~~~~~-----~~~l~v~~~~g~l~~ 332 (376)
T 3q7m_A 269 -SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH--------RLLTSPVLY-----NGNLVVGDSEGYLHW 332 (376)
T ss_dssp -CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT--------SCCCCCEEE-----TTEEEEECTTSEEEE
T ss_pred -CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC--------CcccCCEEE-----CCEEEEEeCCCeEEE
Confidence 3344443 466788888899999999999997755441110 111111121 457888999999999
Q ss_pred EeCCCCccCCcccc
Q 001184 1090 IEPSETERKWGVAV 1103 (1130)
Q Consensus 1090 W~~~~~~~~w~~~~ 1103 (1130)
+|..+++..|....
T Consensus 333 ~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 333 INVEDGRFVAQQKV 346 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999999997654
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.97 E-value=5e-08 Score=106.86 Aligned_cols=234 Identities=15% Similarity=0.129 Sum_probs=150.4
Q ss_pred EEe--cCCCeEEEEEeCcCeEEEEeCCCC----ceeecccceeeeccccccceeeeeecC-CCccEEEEEEcCCCCEEEE
Q 001184 354 DFH--PFHHTLLVVGCGDGEITLWDVGLR----ERLVSKPFKIWDMSNCSMMLQAAIVKD-SSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 354 ~fs--pdg~~llasg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~las 426 (1130)
+++ +++++++++|..++.|.|+|+.+. +..+. .+ +..+... ....-..+..+||| .+++
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~-----ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs 153 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKV-----IE--------PEEVKKVSGYSRLHTVHCGPDA-IYIS 153 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEE-----EC--------HHHHHHHHCEEEEEEEEECSSC-EEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeee-----ec--------hhhcccccCCCcccceeECCCe-EEEE
Confidence 347 899998888989999999999754 22211 00 0000101 11245567889999 6666
Q ss_pred EeCC------CeEEEEEecCCccceeeeeeecCC-CCeeEEEEecCCCceEEEEEc-------------------CCCcE
Q 001184 427 AFTK------HLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCG-------------------DDKLI 480 (1130)
Q Consensus 427 ~~~d------~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~l~l~s~s-------------------~d~~v 480 (1130)
+..+ +.|.+.|.++.+.+.... ..+.. ..-..+.|+|+++ .+++.. .+.+|
T Consensus 154 ~~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V 230 (462)
T 2ece_A 154 ALGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRI 230 (462)
T ss_dssp EEEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred cCCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEE
Confidence 6544 789999999988665332 12222 2345688999999 677774 47899
Q ss_pred EEEe-cCCCeeeEecCC--CcCEEEEeecccCCccEEEEEe------cCCcEEEEEccCCccee--e--ecCC-------
Q 001184 481 RVWD-LSGRKLFQFEGH--EAPVYSVCPHQKENIHFIFSTA------VDGKIKAWLYDNVGSRV--D--YDAP------- 540 (1130)
Q Consensus 481 ~iwd-~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s------~dg~i~vwd~~~~~~~~--~--~~~~------- 540 (1130)
.+|| .+++.+.++.-- ......+.|..++++++++.++ .+++|.+|..+.+.-.. . +...
T Consensus 231 ~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp 310 (462)
T 2ece_A 231 HFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLP 310 (462)
T ss_dssp EEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCC
T ss_pred EEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccc
Confidence 9999 667667776542 2344566665567777777776 46688877665421100 0 1110
Q ss_pred ---------CccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC---CceeEEEecccC---------c----eeEEEE
Q 001184 541 ---------GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE---GALKRTYIGFRK---------K----SAGVVQ 595 (1130)
Q Consensus 541 ---------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~---------~----~v~~~~ 595 (1130)
......+.+++||++|.++.. +.+.|.++|+.. .+.+..+..... . .-..+.
T Consensus 311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~ 387 (462)
T 2ece_A 311 EILKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE 387 (462)
T ss_dssp GGGGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred ccccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence 234678999999999998864 468999999853 344444432200 0 245688
Q ss_pred EcCCCCEEEEEe
Q 001184 596 FDTTRNRILAAG 607 (1130)
Q Consensus 596 ~~~~~~~l~~~~ 607 (1130)
++|||++|+++.
T Consensus 388 lSpDGk~LyVaN 399 (462)
T 2ece_A 388 ISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSSEEEEEC
T ss_pred EcCCCCEEEEEc
Confidence 999999999887
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.96 E-value=1.5e-07 Score=106.99 Aligned_cols=274 Identities=16% Similarity=0.121 Sum_probs=173.2
Q ss_pred cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEE-c-CCCCEEEEEe------------------CCC
Q 001184 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQF-D-TTRNRILAAG------------------EDN 610 (1130)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg 610 (1130)
+||++++++.. .+..|.+.|+.+.++.+.+.-........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 38999988753 37789999999999888665433335667777 5 9999999985 345
Q ss_pred cEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhccccccccccccccccccc
Q 001184 611 QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGS 690 (1130)
Q Consensus 611 ~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1130)
.+.+.|.++.+...++...+ ....++++|+|+++++.+.+..- + ..+.......
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~-------~-~~i~~~~~~~--------------- 229 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEK-------G-MTLPEMTAAE--------------- 229 (595)
T ss_dssp EEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTC-------C-SSHHHHTCCS---------------
T ss_pred eEEEEECCCCeEEEEEEeCC---CccceEECCCCCEEEEEecCccc-------C-cchhhccccc---------------
Confidence 79999999999988887654 24678899999999999876321 0 0000000000
Q ss_pred ceeeccccccccccccCCCCCCCCcccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccce
Q 001184 691 AVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKV 770 (1130)
Q Consensus 691 ~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i 770 (1130)
-..+.+.+....
T Consensus 230 -----------------------------------------------~d~v~V~~~~~~--------------------- 241 (595)
T 1fwx_A 230 -----------------------------------------------MDHIVVFNIAEI--------------------- 241 (595)
T ss_dssp -----------------------------------------------EEEEEEEEHHHH---------------------
T ss_pred -----------------------------------------------cceEEEeeccce---------------------
Confidence 000111111000
Q ss_pred EEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEE
Q 001184 771 ARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMS 850 (1130)
Q Consensus 771 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~ 850 (1130)
..+.++|+.... +.+.+.|..... +..+...++ -.....++.++|||+++++
T Consensus 242 --~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 242 --EKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP--IANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp --HHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE--EESSCCCEEECTTSSEEEE
T ss_pred --eEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe--cCCCceEEEEcCCCCEEEE
Confidence 001122332221 234444432210 111000010 1234567999999999999
Q ss_pred Ee--CCeEEEEECCCce------------eEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec----------
Q 001184 851 AG--GGKVSLFNMMNFK------------VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV---------- 906 (1130)
Q Consensus 851 ~~--dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~---------- 906 (1130)
++ +++|.++|+.+.+ ...... -......++|+| +|...++...|++|.+||+++
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~ 371 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV 371 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence 87 6889999999763 233333 345688999999 666666777899999999987
Q ss_pred CeEEEEEecCCCCe-----eEEEEccCCCeEEEEeC---CCc----------EEEEECCCCcc
Q 001184 907 DEVKTKLKGHQKHI-----TGLAFSTNLNILVSSGS---DAQ----------LIFWNTDTWEK 951 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V-----~~l~~s~dg~~L~s~s~---Dg~----------i~vwd~~~~~~ 951 (1130)
.+.+.++..|-.+- .++.++|||++|+++.. |+. -.++|+..++.
T Consensus 372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 67788887775432 22355899999999865 432 18899966553
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.96 E-value=1e-09 Score=122.66 Aligned_cols=190 Identities=7% Similarity=-0.028 Sum_probs=113.7
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-cCCCeeeEecCCCc
Q 001184 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1130)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~~~~~~~~~~~h~~ 498 (1130)
++..|++++.|+.|+.||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.|| .+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 578899999999999999999986653 333 4565666667777 677888999999999 68888776654422
Q ss_pred CEEEEeecccC-CccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 499 PVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 499 ~v~~~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
... ...|.- .+..+++++.|+.++.||.++++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 111 001111 33578888999999999999988877665543 2345678888888876 789999999999
Q ss_pred ceeEEEecccCceeEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCceeEEEecc
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTTR---NRILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
+.+..+.... .....+..+. ..+++++.||.|+.||..+|+.+......
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 202 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA 202 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 8876654321 1223333332 56788899999999999999988777643
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.96 E-value=2.5e-08 Score=109.99 Aligned_cols=218 Identities=13% Similarity=0.105 Sum_probs=139.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEe
Q 001184 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF 493 (1130)
Q Consensus 414 ~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~ 493 (1130)
+.....+|. |..++.++.|..|| .+++... ....+...+.++...++|. +..++.+ |..+|.+|+.+..+
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~---~~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKW---FFKSGEIIECRPSIGKDGT---IYFGSDK--VYAINPDGTEKWRF 93 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEE---SSCGGGEEEECCEETTTTE---ECCSSCE--EEEECCCGGGGGGS
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEE---EEecCCCcccceEEecCCc---EEEecCc--EEEECCCCcEEEEE
Confidence 344555664 55566788899999 7776443 2223344566777777775 4455544 88888777665554
Q ss_pred cCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEee
Q 001184 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573 (1130)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1130)
...........+. +..++.++.++.+..+|.+ +............+.++...+++..++ ++. ++.|..+|
T Consensus 94 ~~~~~~~~~~~~~----~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v-gt~----~~~l~~~d 163 (330)
T 3hxj_A 94 DTKKAIVSDFTIF----EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYV-GSN----DNYLYAIN 163 (330)
T ss_dssp CC-----CCEEEE----TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEE-ECT----TSEEEEEC
T ss_pred ECCCCcccCceEE----CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEE-EcC----CCEEEEEC
Confidence 4333333333332 2467888889999999988 666655555555566677777887555 432 68899999
Q ss_pred CCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeCC
Q 001184 574 ESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~d 653 (1130)
.. ++....+..... .+..+.+.+++. ++.++ +.|..+| .+++......... ..+.++...++|. +.+++.+
T Consensus 164 ~~-g~~~~~~~~~~~-~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~-l~v~t~~ 234 (330)
T 3hxj_A 164 PD-GTEKWRFKTNDA-ITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISEDGT-IYVTSLD 234 (330)
T ss_dssp TT-SCEEEEEECSSC-CCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTTSC-EEEEETT
T ss_pred CC-CCEeEEEecCCC-ceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCC--cceeceEECCCCe-EEEEcCC
Confidence 88 877766664332 566666767776 44444 8899999 7777766655433 3577888888775 4556667
Q ss_pred CcEEEEE
Q 001184 654 QGIKILA 660 (1130)
Q Consensus 654 g~i~iw~ 660 (1130)
+.+..++
T Consensus 235 ~gl~~~~ 241 (330)
T 3hxj_A 235 GHLYAIN 241 (330)
T ss_dssp TEEEEEC
T ss_pred CeEEEEC
Confidence 7777665
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.95 E-value=3.1e-08 Score=112.55 Aligned_cols=244 Identities=9% Similarity=0.023 Sum_probs=163.7
Q ss_pred cCCCEEEEEe--CCeEEEEECCCceeEEEEeCC-CCCeEEEEE-e-CCCCcEEEEEe------------------CCCcE
Q 001184 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP-PPASTFLAF-H-PQDNNIIAIGM------------------EDSTI 899 (1130)
Q Consensus 843 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-p~~~~~lasg~------------------~dg~v 899 (1130)
+||+++.+.. ++.|.+.|+.+.++...+... ......+++ + | ++.++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 3999998877 577999999999998866543 345888888 5 8 777777774 34579
Q ss_pred EEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC--------------------------------------cE
Q 001184 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA--------------------------------------QL 941 (1130)
Q Consensus 900 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg--------------------------------------~i 941 (1130)
.+.|.++.+.+.++.--. .-..++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999999888876322 356788999999999988653 35
Q ss_pred EEEECCC--CcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEECCCce------------eeeeeecC
Q 001184 942 IFWNTDT--WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKME------------CIRQWVPQ 1005 (1130)
Q Consensus 942 ~vwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~------------~~~~~~~~ 1005 (1130)
.|.|..+ +... ...+... .....+.++|||++++++ .+.++.++|+.+.+ .+..+..
T Consensus 257 ~VID~~~~~~~~~-~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v- 329 (595)
T 1fwx_A 257 KVVDGRKEASSLF-TRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL- 329 (595)
T ss_dssp EEEECSGGGCCSS-EEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-
T ss_pred EEEeCcccCCcee-EEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-
Confidence 5666655 2110 1111111 244568999999999985 47899999999663 2333332
Q ss_pred CCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC----------cccccccCCCcccccCCCCCceeeeEEEEEcCCCC
Q 001184 1006 DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS----------LRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEP 1075 (1130)
Q Consensus 1006 ~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1130)
......++|+|||...++...|+.|.+||+++ .+.+.++..+.. + +|.-.......+| |+
T Consensus 330 ---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq-p-----Gh~~~~~g~t~~~-DG 399 (595)
T 1fwx_A 330 ---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-P-----GHLKTVMGETLDA-TN 399 (595)
T ss_dssp ---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-E-----EEEEETTTTSTTC-CS
T ss_pred ---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc-c-----ccceeccceEeCC-CC
Confidence 35678999999994334445799999999987 344444443321 1 1211111223345 68
Q ss_pred CEEEEEeC---CCc----------EEEEeCCCCccCCcccccC
Q 001184 1076 NQLAVGLT---DGS----------VKVIEPSETERKWGVAVPV 1105 (1130)
Q Consensus 1076 ~~l~s~~~---Dg~----------v~vW~~~~~~~~w~~~~p~ 1105 (1130)
++|+++.. |+. -.++|++.++.+-....|.
T Consensus 400 k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~ 442 (595)
T 1fwx_A 400 DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPT 442 (595)
T ss_dssp SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred CEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcC
Confidence 88888765 442 1789998877764444444
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.90 E-value=7.2e-10 Score=123.86 Aligned_cols=192 Identities=14% Similarity=0.134 Sum_probs=109.3
Q ss_pred CCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCC
Q 001184 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP 965 (1130)
Q Consensus 886 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 965 (1130)
++..+++++.||.|+.||..+|+.+-++.. +.+.+..+..++..+++++.|+.|+.||..+++...............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 456788999999999999999999988876 566666677788888888899999999998876543221111000000
Q ss_pred CCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccc
Q 001184 966 VGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC 1045 (1130)
Q Consensus 966 ~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~ 1045 (1130)
.+ .+..++..++.+.++.++.||..+|+.+..+..+. ...++|++..+++++.|+.|+.||..+|+.+.
T Consensus 86 sp----~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 86 SP----CRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp CS----CC-----CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred Cc----eEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-------cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 11 11234443334678899999999999987765541 24567788899999999999999999998775
Q ss_pred ccCCCcccccCCCCCceeeeEEEEEcCC--CCCEEEEEeCCCcEEEEeCCCCccCCcccc
Q 001184 1046 RIAPSAYMSQASPNSQTVFPLVVTSHPQ--EPNQLAVGLTDGSVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~Dg~v~vW~~~~~~~~w~~~~ 1103 (1130)
.+....+ .. ....++ -...+++++.||.|..||..+++..|....
T Consensus 155 ~~~~~~~-----------~~--~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 155 NATYFDY-----------AA--SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp EEEEEEE-----------CC--BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred eEecccc-----------cC--ccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 5532110 00 111110 014677888999999999999999997653
No 247
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.90 E-value=0.00081 Score=85.25 Aligned_cols=284 Identities=8% Similarity=0.031 Sum_probs=142.8
Q ss_pred EEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC----CCEEEE
Q 001184 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD----GNFIGV 426 (1130)
Q Consensus 351 ~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~las 426 (1130)
+|+++-.+| +|+.|+..|.=.+|.+.....-....+.+-+ .+ ..-++|..++.-.. ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~-----------~~-~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME-----------TF-TNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE-----------EE-CCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe-----------ee-cCcCCceeEEEEccCCCCCCeEEE
Confidence 444444455 5888888887777777643210000011100 11 22356776666431 224544
Q ss_pred Ee---CCCeEEEEEecCCccceeeeeeecCCCCeeEEEEec---CCCceEEEEEcCCCcEEEEecCCCeeeEec--CCCc
Q 001184 427 AF---TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY---PNKQLCIVTCGDDKLIRVWDLSGRKLFQFE--GHEA 498 (1130)
Q Consensus 427 ~~---~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~---d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~--~h~~ 498 (1130)
++ .+|.+++..-.-+-.......+.+ -..++.+.... .+. +|+.+..+.+ +|+..++..+.... +...
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~~e~veev~~~gf~~ 471 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLNGEEVEETELMGFVD 471 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEETTEEEEECCTTCCS
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEeCCcccccccccccC
Confidence 43 457788765432221111223332 24566665432 223 5565555555 55554444444432 1111
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC-ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCC
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1130)
....++...-+++ .++=.. ...|++.+.+.......+.... ..|...+.+ +.+++.+. .+.+..+.+..+
T Consensus 472 ~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-----g~~l~~fel~~~ 542 (1158)
T 3ei3_A 472 DQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-----GRALYYLQIHPQ 542 (1158)
T ss_dssp SSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-----TTEEEEEEEETT
T ss_pred CCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-----CCEEEEEEeeCC
Confidence 1111111111111 122111 2345666655444444444333 345555544 34565553 456777776655
Q ss_pred ceeEEEecccCceeEEEEEcCC------CCEEEEEeC-CCcEEEEeCCCCceeEEEeccCCCCCcceEEEc--CCCCEEE
Q 001184 578 ALKRTYIGFRKKSAGVVQFDTT------RNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN--KEGNLLV 648 (1130)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s--~~~~~l~ 648 (1130)
++.......-...+.|+++.+. +++++.|.. |++++|+++.+.+.+........ ....++.+. ....+|.
T Consensus 543 ~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L~ 621 (1158)
T 3ei3_A 543 ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYLL 621 (1158)
T ss_dssp EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEEE
T ss_pred ceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEEE
Confidence 4332222222347889988763 368999996 99999999998777765554321 123333332 2345788
Q ss_pred EEeCCCcEEEEEcC
Q 001184 649 VTTADQGIKILANA 662 (1130)
Q Consensus 649 ~~~~dg~i~iw~~~ 662 (1130)
+|-.||.+.-+.++
T Consensus 622 igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 622 CALGDGALFYFGLN 635 (1158)
T ss_dssp EEETTSEEEEEEEC
T ss_pred EEeCCCeEEEEEEc
Confidence 88899988666543
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.83 E-value=7.3e-06 Score=86.80 Aligned_cols=223 Identities=11% Similarity=0.047 Sum_probs=143.3
Q ss_pred ccEEEEEEcCCCCEEEEE-eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCC
Q 001184 410 ISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1130)
Q Consensus 410 ~~V~~v~~spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~ 488 (1130)
..+..++|++++..|..+ ..++.|.+++..++.... .+.........+++.+++.. ++++....+.|.+++.++.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 457899999976665554 456899999997654221 12222346889999998764 5566667789999996665
Q ss_pred eeeEecC-CCcCEEEEeecccCCccEEEEEec--CCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 489 KLFQFEG-HEAPVYSVCPHQKENIHFIFSTAV--DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 489 ~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
....+.. .......+++++.. +.+.++... .+.|..++++.................+++++++..|+.+.. .
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 4444332 22456788886532 233344333 468888887654333222233346789999999888877653 3
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~ 644 (1130)
.+.|..+|.........+.+. . ....+++. ++.++.+. ..+.|.++|..+++.+..+.... ......+++.|++
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~ 262 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSC
T ss_pred CCEEEEEecCCCceEEEecCC-C-CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCcc
Confidence 678999998765444333322 2 23445554 45555555 56899999999999888876432 1235778888876
Q ss_pred C
Q 001184 645 N 645 (1130)
Q Consensus 645 ~ 645 (1130)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 4
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.78 E-value=6.4e-07 Score=92.41 Aligned_cols=203 Identities=13% Similarity=0.080 Sum_probs=142.0
Q ss_pred CceeEEEEecCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCC-CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE
Q 001184 834 DVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 909 (1130)
.....++|++|+.+.++.+ ++.|+++|+.+++.+..+..... ....+++. ++++.++...++.+.++|..+.+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 3467899999876555544 47899999999999998764322 23345554 345666666789999999999999
Q ss_pred EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcE
Q 001184 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQL 988 (1130)
Q Consensus 910 ~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i 988 (1130)
+.++..-.. ....+++||++|+.+..++.|.++|..+.+.......... +..-.....+.|. +|...+.. .++.|
T Consensus 99 ~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 99 IKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-CcccccceeEEEE-CCEEEEecCCCCeE
Confidence 998863311 1344667898888888889999999998776554443321 1111235577777 77554444 47899
Q ss_pred EEEECCCceeeeeeecCC----------CCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcc
Q 001184 989 AIYDGSKMECIRQWVPQD----------VLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLR 1042 (1130)
Q Consensus 989 ~v~d~~~~~~~~~~~~~~----------~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~ 1042 (1130)
.+.|..+++.+..+.... ....-.+.++|+|+++.|++++ ..+.+++-++....
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 999999999988876420 0013568999999987555544 67889988887654
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.72 E-value=1.6e-06 Score=104.67 Aligned_cols=192 Identities=12% Similarity=0.159 Sum_probs=129.2
Q ss_pred CCeEEEEECCCceeEEEEeCCC-------------------------------CCeEEEEEeCCCCcEEEEEeCCC----
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPP-------------------------------PASTFLAFHPQDNNIIAIGMEDS---- 897 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~sp~~~~~lasg~~dg---- 897 (1130)
+|.|..+|..+++.+..+.... .....+++.| ...+++.++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 4678888888888877765311 0112468888 666788887776
Q ss_pred ---------------cEEEEEeecCeEEEEEec--CC-------CCeeEEEEccCCC---eEEEEeCCCcEEEEECCCCc
Q 001184 898 ---------------TIQIYNVRVDEVKTKLKG--HQ-------KHITGLAFSTNLN---ILVSSGSDAQLIFWNTDTWE 950 (1130)
Q Consensus 898 ---------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~---~L~s~s~Dg~i~vwd~~~~~ 950 (1130)
.|..+|..+|+.+-.++. |. .+.....+..+|+ .++.++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 399999999999877764 32 2233333344775 68899999999999999988
Q ss_pred ccceeeEec---------cCC--------C-C------------CCCeEEEEEcCCCcEEEEE-----------------
Q 001184 951 KRKSIAIQL---------PAG--------K-L------------PVGETRVQFHSDQVRLLVN----------------- 983 (1130)
Q Consensus 951 ~~~~~~~~~---------~~~--------~-~------------~~~v~~~~~s~d~~~l~~~----------------- 983 (1130)
.+....... ..+ . . ...-..++++|+...+++.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 652211100 000 0 0 0001126788877766541
Q ss_pred --------------------cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccc
Q 001184 984 --------------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043 (1130)
Q Consensus 984 --------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~ 1043 (1130)
.++.|..||+.+|+.+...... .+.....+...+.++++++.||.+++||..+|+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 1267999999999998776554 2333344555788899999999999999999999
Q ss_pred ccccCC
Q 001184 1044 RCRIAP 1049 (1130)
Q Consensus 1044 ~~~~~~ 1049 (1130)
+.++..
T Consensus 492 l~~~~~ 497 (668)
T 1kv9_A 492 LWQFEA 497 (668)
T ss_dssp EEEEEC
T ss_pred heEecC
Confidence 888764
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.71 E-value=6.2e-06 Score=99.49 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=86.2
Q ss_pred cEEEEEecCCcEEEEEccCCcceeeecCCCcc-----------EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCcee
Q 001184 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW-----------CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1130)
Q Consensus 512 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1130)
..++.++.++.|..+|..+++.+..+...... ...+++ .+..+++++. ++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL----DGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC----CCEEEEEECCCCCEe
Confidence 46777778888888898888887766543221 011222 3456666653 889999999999998
Q ss_pred EEEecccCc---eeEE-EEEcCCCCEEEEEeC------CCcEEEEeCCCCceeEEEeccCCC------------------
Q 001184 581 RTYIGFRKK---SAGV-VQFDTTRNRILAAGE------DNQIKFWDMDNVNMLTSTEAEGGL------------------ 632 (1130)
Q Consensus 581 ~~~~~~~~~---~v~~-~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~------------------ 632 (1130)
..+...... .+.. ..+ .+..++++.. +|.|+.+|..+|+.+..+......
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 877653110 1111 111 1345666543 589999999999998877542110
Q ss_pred -----------CCcceEEEcCCCCEEEEEeCCCc
Q 001184 633 -----------PSLPRLRFNKEGNLLVVTTADQG 655 (1130)
Q Consensus 633 -----------~~i~~v~~s~~~~~l~~~~~dg~ 655 (1130)
.....++++|+...++.++.++.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 01124678888788888877654
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.71 E-value=1.5e-06 Score=89.73 Aligned_cols=221 Identities=12% Similarity=0.044 Sum_probs=146.5
Q ss_pred ceeEEEEeCCC-CCeEEEEEeCCCCcEEEEEeC--CCcEEEEEeecCeEEEEEecCCC-CeeEEEEccCCCeEEEEe-CC
Q 001184 864 FKVMTTFMSPP-PASTFLAFHPQDNNIIAIGME--DSTIQIYNVRVDEVKTKLKGHQK-HITGLAFSTNLNILVSSG-SD 938 (1130)
Q Consensus 864 ~~~~~~~~~~~-~~i~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~~-~V~~l~~s~dg~~L~s~s-~D 938 (1130)
.+.+.++.... .....++|++ ++.+.++.+. ++.|+++|+.+++.+..+.-... ....+++. ++.|..+. .+
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 34556665322 2368999999 5665555443 57999999999999988753221 22345554 55665554 57
Q ss_pred CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCC--CCCCeEEE
Q 001184 939 AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDV--LSSPISSA 1015 (1130)
Q Consensus 939 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~--~~~~v~~v 1015 (1130)
+.+.++|..+.+........ .. . .+.+++||+.++++ .++.+.++|..+.+.+..+..... .-..++.+
T Consensus 86 ~~v~viD~~t~~v~~~i~~g---~~--~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ---MK--D---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC---SS--S---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred CEEEEEECCCCcEEEEEECC---CC--C---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 89999999987665443221 11 1 13366687777764 477899999999998888765421 01246788
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCccccc--CCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1016 AYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQ--ASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1016 ~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
.|. +|++.+....++.|.+-|..+++.+..+......+. ............++|+|+...+++++.....|.+-++.
T Consensus 158 e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 158 EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 888 776555554678999999999999888875321110 00011123456789999767788888889999999987
Q ss_pred CCc
Q 001184 1094 ETE 1096 (1130)
Q Consensus 1094 ~~~ 1096 (1130)
..+
T Consensus 237 ~~~ 239 (266)
T 2iwa_A 237 LVR 239 (266)
T ss_dssp ECC
T ss_pred ccc
Confidence 654
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.69 E-value=1.6e-06 Score=88.09 Aligned_cols=187 Identities=11% Similarity=0.104 Sum_probs=131.2
Q ss_pred CCceeEEEEecCCCEEEEEe-CC--eEEEEECCCceeEEEEeCCCCCeE--EEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 833 EDVVPCVALSKNDSYVMSAG-GG--KVSLFNMMNFKVMTTFMSPPPAST--FLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~--~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
......+.|+ ++.+..+.+ +| .|+++|+.+++.+..+.... ... .+++. ++++.+....++.+.+||.++.
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTC
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccC
Confidence 4456789998 666555555 55 79999999999999887543 333 34443 4455555566899999999999
Q ss_pred eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCC
Q 001184 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HET 986 (1130)
Q Consensus 908 ~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~ 986 (1130)
+.+.++.... ....+++|++.|+.+..++.|.++|..+.+.......... +..-..+..+.+. +|+..+.. .++
T Consensus 118 ~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~-g~~~~~lNELe~~-~G~lyan~w~~~ 192 (262)
T 3nol_A 118 RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH-GEELPELNELEWV-DGEIFANVWQTN 192 (262)
T ss_dssp CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC-CccccccceeEEE-CCEEEEEEccCC
Confidence 9999987533 2234456888888877788899999998776555443321 1111234456666 67655554 578
Q ss_pred cEEEEECCCceeeeeeecCC---------CCCCCeEEEEECCCCCEEEEEe
Q 001184 987 QLAIYDGSKMECIRQWVPQD---------VLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~---------~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
.|.+.|.++|+.+..+.... ....-.+.|||+|+++.|++++
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999988876531 1123568999999999888877
No 254
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.68 E-value=1e-05 Score=85.71 Aligned_cols=204 Identities=9% Similarity=-0.031 Sum_probs=134.8
Q ss_pred CceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEE
Q 001184 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 911 (1130)
..+..+++++++..|..+. .+.|..++..+......+.........++++++++.+.++-...+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 3567899999877777666 68899999987655444433335788999999445555555567889999987543222
Q ss_pred EEecCCCCeeEEEEccCCCeEEEEeC---CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cCC
Q 001184 912 KLKGHQKHITGLAFSTNLNILVSSGS---DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HET 986 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~dg~~L~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~ 986 (1130)
...........++++|++..|..+.. .+.|..++++.... .. .... .......+++++++..|.++ ..+
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~--~~~~---~~~~P~gia~d~~~~~lyv~d~~~~ 189 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RI--LAQD---NLGLPNGLTFDAFSSQLCWVDAGTH 189 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EE--EECT---TCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EE--EEEC---CCCCCcEEEEcCCCCEEEEEECCCC
Confidence 22222245789999997776666554 36788888875321 11 1111 11457889999988777664 467
Q ss_pred cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcccccccCC
Q 001184 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
.|.+++............ ......+++. +..|+.+. ..+.|.++|..+++.+..+..
T Consensus 190 ~I~~~~~~g~~~~~~~~~----~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 190 RAECLNPAQPGRRKVLEG----LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp EEEEEETTEEEEEEEEEC----CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred EEEEEecCCCceEEEecC----CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 899999986544333322 1234566654 45555555 568999999999988877753
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.65 E-value=1.1e-05 Score=94.83 Aligned_cols=191 Identities=11% Similarity=0.127 Sum_probs=121.2
Q ss_pred CCeEEEEECCCceeEEEEeCCCCCe--------------------------------------EEEEEeCCCCcEEEEEe
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPPPAS--------------------------------------TFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~~~i--------------------------------------~~l~~sp~~~~~lasg~ 894 (1130)
+|.|+.+|..+++.+-.+....... ..+++.+ ...+++.+.
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~ 259 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGT 259 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeC
Confidence 5788888888888877765322110 1356667 455666666
Q ss_pred CC----------------CcEEEEEeecCeEEEEEecCCC----------CeeEEEEc-cCC---CeEEEEeCCCcEEEE
Q 001184 895 ED----------------STIQIYNVRVDEVKTKLKGHQK----------HITGLAFS-TNL---NILVSSGSDAQLIFW 944 (1130)
Q Consensus 895 ~d----------------g~v~iwd~~~~~~~~~l~~h~~----------~V~~l~~s-~dg---~~L~s~s~Dg~i~vw 944 (1130)
.+ +.|.-+|.++|+.+-.++.... ++. +... .+| ..++.++.+|.+.+.
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence 54 3799999999999877664221 121 2222 567 467788999999999
Q ss_pred ECCCCcccceeeEec----------cCCC-----------------------CCCCeEEEEEcCCCcEEEEE--------
Q 001184 945 NTDTWEKRKSIAIQL----------PAGK-----------------------LPVGETRVQFHSDQVRLLVN-------- 983 (1130)
Q Consensus 945 d~~~~~~~~~~~~~~----------~~~~-----------------------~~~~v~~~~~s~d~~~l~~~-------- 983 (1130)
|..+++.+-...... ..+. -...-..++++|+..++++.
T Consensus 339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (599)
T 1w6s_A 339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW 418 (599)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence 999987654332110 0000 00011245667766655441
Q ss_pred --------------------------------cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC
Q 001184 984 --------------------------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1130)
Q Consensus 984 --------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg 1031 (1130)
..+.+..||+.+|+.+-...... ++.+-.+...+.+++.++.||
T Consensus 419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagg~vf~gt~dg 494 (599)
T 1w6s_A 419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF----AVWGGTMATAGDLVFYGTLDG 494 (599)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTS
T ss_pred ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC----CccCcceEecCCEEEEECCCC
Confidence 23678889999998877764331 222112233567788899999
Q ss_pred cEEEEeCCCcccccccCC
Q 001184 1032 SIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 1032 ~i~vwd~~~~~~~~~~~~ 1049 (1130)
.++.||.++|+.+-++..
T Consensus 495 ~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 495 YLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEEEEETTTCCEEEEEEC
T ss_pred eEEEEECCCCCEEEEeeC
Confidence 999999999999887753
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.62 E-value=4.1e-06 Score=84.91 Aligned_cols=186 Identities=12% Similarity=0.062 Sum_probs=129.4
Q ss_pred CCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeE--EEEEeCCCCcEEEEEeCCCcEEEEEeecCeE
Q 001184 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPAST--FLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 909 (1130)
......+.|+. +.+..+.+ +|.|+++|+++++.+..+ .. .... .+++. ++++.+....++.+.+||.++.+.
T Consensus 54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE
Confidence 44557888873 44444444 688999999999998887 32 3333 35554 456666666789999999999999
Q ss_pred EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcE
Q 001184 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQL 988 (1130)
Q Consensus 910 ~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i 988 (1130)
+.++..- ..-+.++ +|++.|+.+..++.|.++|..+.+.......... +..-..+..+.|. +|+..+.. .++.|
T Consensus 129 ~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~-g~~v~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 129 ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR-GQPVELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-CcccccccccEEe-CCEEEEEECCCCeE
Confidence 9998853 2223444 6788888888899999999999776555443321 1111244566776 77655544 57899
Q ss_pred EEEECCCceeeeeeecC----------CCCCCCeEEEEECCCCCEEEEEe
Q 001184 989 AIYDGSKMECIRQWVPQ----------DVLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 989 ~v~d~~~~~~~~~~~~~----------~~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
.+.|.++|+.+..+... .....-.+.|+|+|+++.|++++
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999998887542 11134668999999877666666
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=3.5e-06 Score=85.51 Aligned_cols=208 Identities=9% Similarity=0.102 Sum_probs=137.6
Q ss_pred eeEEEEeCCCCC--eEEEEEeCCCCcEEEEEeCCC--cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEe-CCC
Q 001184 865 KVMTTFMSPPPA--STFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG-SDA 939 (1130)
Q Consensus 865 ~~~~~~~~~~~~--i~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg 939 (1130)
+.+.++. |... ...+.|+ ++.+..+.+.+| .|+++|+++++.+.++.-. .........++++.|..+. .++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 4455564 4433 4789998 357777777766 8999999999999887643 3344444444566666665 478
Q ss_pred cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc-CCcEEEEECCCceeeeeeecCCC-C-CCCeEEEE
Q 001184 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDV-L-SSPISSAA 1016 (1130)
Q Consensus 940 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~-~-~~~v~~v~ 1016 (1130)
.+.+||.++.+........ . ....+++|+..|+.++ ++.|.++|..+.+.+..+..... . -..++.+.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~----~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYD----G-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EEEEEETTTCCEEEEEECS----S-----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECccCcEEEEEECC----C-----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 8999999997765544331 1 1133446777777753 67899999999998888765310 0 13445677
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCC-CCCceeeeEEEEEcCCCCCEEEEEeCCCc
Q 001184 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS-PNSQTVFPLVVTSHPQEPNQLAVGLTDGS 1086 (1130)
Q Consensus 1017 ~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 1086 (1130)
|. +|++.+..-.+..|.+.|..+|+....+......+... ..........++|+|....++++|=.--.
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~ 248 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPK 248 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence 76 77655555468899999999999999988664433210 01112234568999976666666644443
No 258
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.60 E-value=0.0042 Score=76.53 Aligned_cols=529 Identities=11% Similarity=0.030 Sum_probs=270.9
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...|.++....+|. |-.|+.+| +..||..+++... . .......|.++.. .+| .|-.
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~--~-----------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQ--P-----------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECC--C-----------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEEC--c-----------------ccCCCceEEEEEe-cCC-cEEE
Confidence 34689988888885 44566554 7899987754321 0 0011235777754 355 4555
Q ss_pred EeCCCeEEEEEecCCccceeeeee-e-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCC------Cc
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEI-D-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH------EA 498 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~-~-~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h------~~ 498 (1130)
++.+ -+..+|..+++. ...... . -....|.++....+|. +.+ |..+ -+..+|........+... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6655 478888876542 211000 0 1134688888877777 333 3333 477788433333332211 12
Q ss_pred CEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
.|.++... .++..|..|+. +.+..+|..+.............|.++....+|.+.+.. ++-+.+++..+++
T Consensus 192 ~i~~i~~d--~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT------~~Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLED--TTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT------DNGLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEEE--TTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE------TTEEEEECCTTSC
T ss_pred eeEEEEEE--CCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe------CCceeEEecCCCc
Confidence 47777653 33445555554 457778876543222111123357888888888766654 2348888877665
Q ss_pred eeEEEec------ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc-----CCCCCcceEEEcCCCCEE
Q 001184 579 LKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-----GGLPSLPRLRFNKEGNLL 647 (1130)
Q Consensus 579 ~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~i~~v~~s~~~~~l 647 (1130)
....... .....|.++....+|. |..|+..| +.++.... ........ .....|.++....+|.+.
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 4322111 1122577787777766 44455556 55544322 12222110 112247777777777755
Q ss_pred EEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccC
Q 001184 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1130)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1130)
+ |+.+| +..++..++... .+. .+.+.
T Consensus 339 i-Gt~~G-l~~~~~~~~~~~--~~~----------------------~~~~~---------------------------- 364 (758)
T 3ott_A 339 F-GGANG-LIRFTDPAGERH--DAI----------------------WYRMG---------------------------- 364 (758)
T ss_dssp E-EETTE-EEEESCTTSSCC--CCE----------------------EECTT----------------------------
T ss_pred E-eeCCc-ceeecccccccc--eeE----------------------EeccC----------------------------
Confidence 4 45554 445543322000 000 00000
Q ss_pred CCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccc
Q 001184 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1130)
Q Consensus 728 ~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1130)
.. ...-....|.++....+|..-+ ++ ++-+..|+...+...
T Consensus 365 --------------------~~------------~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~----- 405 (758)
T 3ott_A 365 --------------------DK------------TYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFI----- 405 (758)
T ss_dssp --------------------CS------------SSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEE-----
T ss_pred --------------------Cc------------CCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEE-----
Confidence 00 0000224566777666666443 33 345666654332110
Q ss_pred ccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCc-----eeE---EEEe---C-CCC
Q 001184 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNF-----KVM---TTFM---S-PPP 875 (1130)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~-----~~~---~~~~---~-~~~ 875 (1130)
.+..... ........|.++...++|.+.+....+.|.++|..+. ... ..+. + ...
T Consensus 406 -------~~~~~~~------~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (758)
T 3ott_A 406 -------HYNIVDN------TGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGM 472 (758)
T ss_dssp -------EEEEECC------C--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCS
T ss_pred -------EeecCCC------cCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccc
Confidence 0000000 0000234688888888887666544667888886531 111 1221 1 223
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEec---CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccc
Q 001184 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG---HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952 (1130)
Q Consensus 876 ~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~ 952 (1130)
.|.++...+ ++.+.+.++..+-|..+|..+++....... ....+.++....+|...+. +..| +..++..+....
T Consensus 473 ~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~ 549 (758)
T 3ott_A 473 FINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQ 549 (758)
T ss_dssp CEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCC
T ss_pred eeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceE
Confidence 588888888 677665333344588889887765433211 1245788888888876654 4455 888887764432
Q ss_pred ceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEE-CCCCCEEEEEeCCC
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAY-SCNSQLIYATFTDG 1031 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~-s~dg~~l~t~~~Dg 1031 (1130)
... ..+-....+.++... +|.+.+++ ++.+..+|..+.+... +... ...+....+ .+||. |..|+.+|
T Consensus 550 ~~~----~~gl~~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~G~-l~fG~~~G 618 (758)
T 3ott_A 550 SIS----FGSFSNNEILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQ-QNMT---NKRFTSLLFDPKEDC-VYLGGADG 618 (758)
T ss_dssp BCC----CCC---CCEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEE-C--C---CCCCSEEEEETTTTE-EEEECBSE
T ss_pred Eec----ccCCCccceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEE-ecCC---CCceeeeEEECCCCc-EEEecCCc
Confidence 110 011112457777664 66655554 5668899988765432 2111 223334444 34665 55567677
Q ss_pred cEEEEeCC
Q 001184 1032 SIGVFDAD 1039 (1130)
Q Consensus 1032 ~i~vwd~~ 1039 (1130)
.++ ++..
T Consensus 619 l~~-f~p~ 625 (758)
T 3ott_A 619 FGI-SHSN 625 (758)
T ss_dssp EEE-EEC-
T ss_pred eEE-EChh
Confidence 554 4443
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.59 E-value=1.6e-06 Score=87.87 Aligned_cols=205 Identities=9% Similarity=0.049 Sum_probs=135.5
Q ss_pred eeEEEEeCCCC--CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEe-CCCcE
Q 001184 865 KVMTTFMSPPP--ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG-SDAQL 941 (1130)
Q Consensus 865 ~~~~~~~~~~~--~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~i 941 (1130)
+.+.++. |.. -...+.|+ ++.+..+.+.+|.|+++|+++++.+..+ - ..........++++.|..+. .++.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEE
Confidence 3445553 333 35788887 4678888888999999999999888776 2 23344433344555555544 57889
Q ss_pred EEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc-CCcEEEEECCCceeeeeeecCCC--CCCCeEEEEEC
Q 001184 942 IFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDV--LSSPISSAAYS 1018 (1130)
Q Consensus 942 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~--~~~~v~~v~~s 1018 (1130)
.+||.++.+........ . .- ..+.+|+..|+.++ ++.|.++|..+.+.+..+..... .-..++.+.|.
T Consensus 119 ~V~D~~Tl~~~~ti~~~----~---eG--wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYS----G---EG--WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA 189 (268)
T ss_dssp EEEETTTTEEEEEEECS----S---CC--CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EEEECCcCcEEEEEeCC----C---ce--eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence 99999997765554431 1 11 23336778777754 88999999999998888765321 01245677777
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCC--CCCceeeeEEEEEcCCCCCEEEEEeCC
Q 001184 1019 CNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS--PNSQTVFPLVVTSHPQEPNQLAVGLTD 1084 (1130)
Q Consensus 1019 ~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~D 1084 (1130)
+|++.+..-.+..|.+.|.++|+.+..+......+... ..........++|+|....+++||=.-
T Consensus 190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~W 256 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLW 256 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTC
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCC
Confidence 77655555468899999999999998888654322110 011112345699999777777776443
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.58 E-value=1.2e-05 Score=94.78 Aligned_cols=191 Identities=13% Similarity=0.109 Sum_probs=122.1
Q ss_pred CCeEEEEECCCceeEEEEeCCCCC--------------------------------------eEEEEEeCCCCcEEEEEe
Q 001184 853 GGKVSLFNMMNFKVMTTFMSPPPA--------------------------------------STFLAFHPQDNNIIAIGM 894 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------------i~~l~~sp~~~~~lasg~ 894 (1130)
++.|..+|..+++.+.++...... ...+++.+ ...+++.+.
T Consensus 175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~ 253 (571)
T 2ad6_A 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGS 253 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEEC
Confidence 578888898888888776532211 02356777 444555555
Q ss_pred CC----------------CcEEEEEeecCeEEEEEec--CC--------CCeeEEEEccCCC---eEEEEeCCCcEEEEE
Q 001184 895 ED----------------STIQIYNVRVDEVKTKLKG--HQ--------KHITGLAFSTNLN---ILVSSGSDAQLIFWN 945 (1130)
Q Consensus 895 ~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s~dg~---~L~s~s~Dg~i~vwd 945 (1130)
.+ +.|..+|..+|+.+-.++. |. .++. +....+|+ .++.++.+|.+.+.|
T Consensus 254 g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD 332 (571)
T 2ad6_A 254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLN 332 (571)
T ss_dssp CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEE
T ss_pred CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEE
Confidence 32 3599999999998877653 21 2221 22234774 577888999999999
Q ss_pred CCCCcccceeeEec----------cCCC------------C------C-----CCeEEEEEcCCCcEEEEE---------
Q 001184 946 TDTWEKRKSIAIQL----------PAGK------------L------P-----VGETRVQFHSDQVRLLVN--------- 983 (1130)
Q Consensus 946 ~~~~~~~~~~~~~~----------~~~~------------~------~-----~~v~~~~~s~d~~~l~~~--------- 983 (1130)
..+++.+-...... ..+. . + ..-..++++|+..++++.
T Consensus 333 ~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~ 412 (571)
T 2ad6_A 333 RENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWE 412 (571)
T ss_dssp TTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred CCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccc
Confidence 99987643322110 0000 0 0 001246788887777653
Q ss_pred -----------------------------cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 001184 984 -----------------------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1130)
Q Consensus 984 -----------------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~ 1034 (1130)
.++.+..||+.+++.+..+.... .+.+..+...+.++++++.||.|+
T Consensus 413 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~----~~~~~~~~t~gg~v~~g~~dg~l~ 488 (571)
T 2ad6_A 413 PFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLK 488 (571)
T ss_dssp ECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEE
T ss_pred ccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC----CccceeEEECCCEEEEEcCCCeEE
Confidence 23679999999999887765431 222223333566778899999999
Q ss_pred EEeCCCcccccccCC
Q 001184 1035 VFDADSLRLRCRIAP 1049 (1130)
Q Consensus 1035 vwd~~~~~~~~~~~~ 1049 (1130)
+||..+|+.+.++..
T Consensus 489 a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 489 ALDNKDGKELWNFKM 503 (571)
T ss_dssp EEETTTCCEEEEEEC
T ss_pred EEECCCCCEEEEEeC
Confidence 999999999887764
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.56 E-value=6.7e-06 Score=96.62 Aligned_cols=249 Identities=13% Similarity=0.126 Sum_probs=153.5
Q ss_pred EEEecCCCE----EEEEe-CCeEEEEECCCceeEEEEeCCCC----CeE-EEEEeCCCCcEEEEEe------CCCcEEEE
Q 001184 839 VALSKNDSY----VMSAG-GGKVSLFNMMNFKVMTTFMSPPP----AST-FLAFHPQDNNIIAIGM------EDSTIQIY 902 (1130)
Q Consensus 839 l~~s~dg~~----la~~~-dg~i~iwd~~~~~~~~~~~~~~~----~i~-~l~~sp~~~~~lasg~------~dg~v~iw 902 (1130)
++++|.+.. |++++ ++.|..+|..+|+.+-....... .+. ...+. ++. +++++ .+|.|+-+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEE
Confidence 455443333 66665 89999999999999877654321 222 11222 444 44454 37999999
Q ss_pred EeecCeEEEEEecCCCC-------------------------------------e-eEEEEccCCCeEEEEeCCC-----
Q 001184 903 NVRVDEVKTKLKGHQKH-------------------------------------I-TGLAFSTNLNILVSSGSDA----- 939 (1130)
Q Consensus 903 d~~~~~~~~~l~~h~~~-------------------------------------V-~~l~~s~dg~~L~s~s~Dg----- 939 (1130)
|..+|+.+-++...... + ..+++.++...++.+..++
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999988776532211 0 1356667777788776653
Q ss_pred -----------cEEEEECCCCcccceeeEeccCCC-----CCCCeEEEEEc-CCC---cEEEE-EcCCcEEEEECCCcee
Q 001184 940 -----------QLIFWNTDTWEKRKSIAIQLPAGK-----LPVGETRVQFH-SDQ---VRLLV-NHETQLAIYDGSKMEC 998 (1130)
Q Consensus 940 -----------~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s-~d~---~~l~~-~~d~~i~v~d~~~~~~ 998 (1130)
.|..+|.++++.+-.. +...+. ......-+... .+| ..++. +.++.++++|..+|+.
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~--q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGY--QKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEE--ESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred cccCCCccccceEEEEeCCCCceeeEe--ecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 7999999998764332 221110 00111122222 567 34444 5789999999999998
Q ss_pred eeeeecCC----------CCCCCe--------------------------EEEEECCCCCEEEEEe--------------
Q 001184 999 IRQWVPQD----------VLSSPI--------------------------SSAAYSCNSQLIYATF-------------- 1028 (1130)
Q Consensus 999 ~~~~~~~~----------~~~~~v--------------------------~~v~~s~dg~~l~t~~-------------- 1028 (1130)
+....... ....++ ..++|+|+.+++++..
T Consensus 346 lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~ 425 (599)
T 1w6s_A 346 VSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPY 425 (599)
T ss_dssp EEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCC
T ss_pred eecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccc
Confidence 87654321 001111 2467788777666532
Q ss_pred -------------------------CCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeC
Q 001184 1029 -------------------------TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLT 1083 (1130)
Q Consensus 1029 -------------------------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 1083 (1130)
.+|.|..||+.+|+.+-+..... +. .+. ++.. .+.+++.++.
T Consensus 426 ~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~---~~g---~~~t-----agg~vf~gt~ 492 (599)
T 1w6s_A 426 KAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AV---WGG---TMAT-----AGDLVFYGTL 492 (599)
T ss_dssp CTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CC---CSB---CEEE-----TTTEEEEECT
T ss_pred cCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--Cc---cCc---ceEe-----cCCEEEEECC
Confidence 34788999999998776553211 00 011 1111 3568888999
Q ss_pred CCcEEEEeCCCCccCCcccccC
Q 001184 1084 DGSVKVIEPSETERKWGVAVPV 1105 (1130)
Q Consensus 1084 Dg~v~vW~~~~~~~~w~~~~p~ 1105 (1130)
||.|+.||..+++..|....|.
T Consensus 493 dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 493 DGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECSS
T ss_pred CCeEEEEECCCCCEEEEeeCCC
Confidence 9999999999999999886653
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.56 E-value=1.8e-05 Score=93.36 Aligned_cols=110 Identities=8% Similarity=0.076 Sum_probs=68.3
Q ss_pred cEEEEEec-CCcEEEEEc-cCCcceeeecCCCcc-----------EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc
Q 001184 512 HFIFSTAV-DGKIKAWLY-DNVGSRVDYDAPGLW-----------CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1130)
Q Consensus 512 ~~l~s~s~-dg~i~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1130)
..++.++. ++.|..+|. .+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 35556666 777888887 777777665433210 011222 3455666643 7899999999999
Q ss_pred eeEEEecccC---ceeE-EEEEcCCCCEEEEEeC------CCcEEEEeCCCCceeEEEecc
Q 001184 579 LKRTYIGFRK---KSAG-VVQFDTTRNRILAAGE------DNQIKFWDMDNVNMLTSTEAE 629 (1130)
Q Consensus 579 ~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~ 629 (1130)
.+..+..... ..+. ...+ .+..+++++. ++.|+.+|..+|+.+..+...
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 9877653220 0111 1111 1346666654 799999999999998877643
No 263
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.56 E-value=0.0055 Score=75.55 Aligned_cols=573 Identities=12% Similarity=0.115 Sum_probs=298.8
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
...|.++.-..+|. |=.|+.+| +..||-..-+... .. .......|.++.-..+|. |-.
T Consensus 21 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~~~~~~--------~~----------~~~~~~~i~~i~~d~~g~-lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGL--IWIGSNKG-LFSYDGYSTQQHF--------TY----------GENNNTRIYCGVIIDNTY-LYM 78 (758)
T ss_dssp CCCEEEEEECTTSC--EEEEESSC-EEEECSSCEEECS--------CT----------TSTTSSCEEEEEEETTTE-EEE
T ss_pred cceEEEEEECCCCC--EEEEECCC-ccccCCCceEEEE--------cc----------CCCCCceEEEEEEcCCCc-EEE
Confidence 45799999999996 44466666 5567632211100 00 011235688988887774 445
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-----CCCcCEE
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-----GHEAPVY 501 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-----~h~~~v~ 501 (1130)
|+.+| +..||..+.+... ........|.++.. .+|. |..++.+ -+..+|.....+..+. .....|.
T Consensus 79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~ 149 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIY 149 (758)
T ss_dssp EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEE
T ss_pred EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEE
Confidence 56665 7899987753211 11112335777654 4554 3334444 5788884333333331 1234577
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceee-ecC----CCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-YDA----PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1130)
++... .++. |..++.+ .+..++..+...... ... ....|.++...+++..|..++ ++-|..+|..+
T Consensus 150 ~i~~d--~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-----~~Gl~~~~~~~ 220 (758)
T 3ott_A 150 SIIRT--KDNQ-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-----EGYLFQYFPST 220 (758)
T ss_dssp EEEEC--TTCC-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE-----EEEEEEEETTT
T ss_pred EEEEc--CCCC-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE-----CCCCeEEcCCC
Confidence 77653 3444 4445544 466777655432211 111 122488888888777555554 33588899877
Q ss_pred CceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccC-----CCCCcceEEEcCCCCEEEEEe
Q 001184 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-----GLPSLPRLRFNKEGNLLVVTT 651 (1130)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~i~~v~~s~~~~~l~~~~ 651 (1130)
++... +.......|.++....+|...+ |+. +-+.+++..+++......... ....|.++....+|.+- .|+
T Consensus 221 ~~~~~-~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT 296 (758)
T 3ott_A 221 GQIKQ-TEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGT 296 (758)
T ss_dssp TEEEE-EEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEE
T ss_pred CeEEe-ccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEe
Confidence 65432 2222223577777777776544 454 458889887765432221111 11247777777777644 455
Q ss_pred CCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccccCCCCc
Q 001184 652 ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKP 731 (1130)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1130)
..| +.++..... ...+
T Consensus 297 ~~G-l~~~~~~~~---~~~~------------------------------------------------------------ 312 (758)
T 3ott_A 297 DYG-ISLSRYNSA---LQFI------------------------------------------------------------ 312 (758)
T ss_dssp SSS-EEEECCCC----CEEE------------------------------------------------------------
T ss_pred CCc-ccccccCCc---eeEE------------------------------------------------------------
Confidence 555 444322111 0000
Q ss_pred ccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCccccccc
Q 001184 732 RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAV 811 (1130)
Q Consensus 732 ~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 811 (1130)
...... .......|.++....+|..-+. +.+| +..++...+...
T Consensus 313 -------------~~~~~~------------~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~--------- 356 (758)
T 3ott_A 313 -------------PISQIT------------GTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH--------- 356 (758)
T ss_dssp -------------EHHHHS------------CSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC---------
T ss_pred -------------ecccCC------------CCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc---------
Confidence 000000 0001234666666666664443 3444 333432211000
Q ss_pred ccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEe-C-----CCCCeEEEEEeCC
Q 001184 812 APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM-S-----PPPASTFLAFHPQ 885 (1130)
Q Consensus 812 ~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~-~-----~~~~i~~l~~sp~ 885 (1130)
....+...... ..-....|.++....+|.+-+.. ++.|..||..+++...... . ....|.++...+
T Consensus 357 ~~~~~~~~~~~------~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~- 428 (758)
T 3ott_A 357 DAIWYRMGDKT------YPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT- 428 (758)
T ss_dssp CCEEECTTCSS------SCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-
T ss_pred eeEEeccCCcC------CCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-
Confidence 00000000000 00123568899988888866544 6789999998876543221 1 123577887766
Q ss_pred CCcEEEEEeCCCcEEEEEeec------CeEE--EEEec----CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccc
Q 001184 886 DNNIIAIGMEDSTIQIYNVRV------DEVK--TKLKG----HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK 953 (1130)
Q Consensus 886 ~~~~lasg~~dg~v~iwd~~~------~~~~--~~l~~----h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~ 953 (1130)
++.+. .|+..+-|.++|..+ .... ..+.. ....|.++...++|...+.++..+-|..+|..+++...
T Consensus 429 ~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~ 507 (758)
T 3ott_A 429 AGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK 507 (758)
T ss_dssp TSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE
T ss_pred CCCEE-EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE
Confidence 55544 476666688888653 1111 12211 12358899999889877644444558888987654321
Q ss_pred eeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 001184 954 SIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSI 1033 (1130)
Q Consensus 954 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i 1033 (1130)
...........+.++....+|.+.+++. +.+..|+..++.... +....-....|.++... +|. |..++..| |
T Consensus 508 ---~~~~~~~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l 579 (758)
T 3ott_A 508 ---LFADELTGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNS-IWVSTTNG-L 579 (758)
T ss_dssp ---ECTTTSCGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTE-EEEEESSC-E
T ss_pred ---ecCCCcCCCcccceEEECCCCCEEEEec-CceEEEecCCCceEE-ecccCCCccceEEEEEC-CCC-EEEECCCC-e
Confidence 1111111124577888888998887764 568899887654322 21111113568888764 554 55555555 7
Q ss_pred EEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1034 GVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1034 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
..+|..+.+... +. .+. .... ...+...+ ..|..|+.+| +..+++..
T Consensus 580 ~~~~~~~~~~~~-~~----~~~-----~~~~--~~~~~~~~-G~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 580 WIIDRKTMDARQ-QN----MTN-----KRFT--SLLFDPKE-DCVYLGGADG-FGISHSNL 626 (758)
T ss_dssp EEEETTTCCEEE-C------CC-----CCCS--EEEEETTT-TEEEEECBSE-EEEEEC--
T ss_pred EEEcCCCceeEE-ec----CCC-----Ccee--eeEEECCC-CcEEEecCCc-eEEEChhh
Confidence 778888765432 11 011 0111 12333333 4688888888 66778764
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.55 E-value=1.5e-05 Score=80.19 Aligned_cols=189 Identities=12% Similarity=0.124 Sum_probs=131.1
Q ss_pred CCCceeEEEEecCCCEEEEEe-C--CeEEEEECCCceeEEEEeCCCCC-eEEEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 832 AEDVVPCVALSKNDSYVMSAG-G--GKVSLFNMMNFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
.......+.|+. +.+..+.+ + ..|+.+|+.+++.+......... -..+++. ++++.+....++.+.+||.++.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTT
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcC
Confidence 345677899986 45555544 3 47999999999999988754332 1334444 4566666677899999999999
Q ss_pred eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCC
Q 001184 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HET 986 (1130)
Q Consensus 908 ~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~ 986 (1130)
+.+.++..... =.++ .+|++.|+.+..++.|.++|..+.+.......... +..-..+..+.+. +|+..+.. .++
T Consensus 96 ~~~~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~-g~~~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 96 TPRARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG-GRPLDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp EEEEEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred cEEEEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC-CcccccceeeEEe-CCEEEEEECCCC
Confidence 99999875432 2344 46788888888889999999999776555443321 1111234455655 66655544 578
Q ss_pred cEEEEECCCceeeeeeecCC----------CCCCCeEEEEECCCCCEEEEEe
Q 001184 987 QLAIYDGSKMECIRQWVPQD----------VLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~----------~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
.|.+.|..+|+.+..+.... ....-.+.|+++|+++.|++.+
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999988876331 1124568999999988777777
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.55 E-value=7e-06 Score=99.37 Aligned_cols=277 Identities=9% Similarity=0.035 Sum_probs=153.8
Q ss_pred EEEEec-CCCeEEEEEeCcC-----------eEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcC
Q 001184 352 SMDFHP-FHHTLLVVGCGDG-----------EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1130)
Q Consensus 352 ~v~fsp-dg~~llasg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 419 (1130)
++++.| +|+ +++.|+.+. .+.+||..+++..... .....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc----------------ccCCCCCCccccccCCC
Confidence 667788 776 778876542 5889999887643210 01122333445678889
Q ss_pred CCCEEEEEeC-CCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-CC-----CcEEEEe-cCCCeee
Q 001184 420 DGNFIGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DD-----KLIRVWD-LSGRKLF 491 (1130)
Q Consensus 420 dg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-~d-----~~v~iwd-~~~~~~~ 491 (1130)
+|+.+++|+. +..+.+||..+++-.. ...+... ..-.+++..++|+ +++.|+ .+ ..+.+|| .+++. .
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~-R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W-~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW-T 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE-E
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeE-CCCCCcc-ccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcc-e
Confidence 9999999984 4589999998764221 1112111 1123456667888 777777 44 5789999 44433 2
Q ss_pred EecCCC-cCE----EEEeecccCCccEEEEEecCC---------cEEEEEccCCcceeeecCC---------CccEEEEE
Q 001184 492 QFEGHE-APV----YSVCPHQKENIHFIFSTAVDG---------KIKAWLYDNVGSRVDYDAP---------GLWCTTML 548 (1130)
Q Consensus 492 ~~~~h~-~~v----~~~~~~~~~~~~~l~s~s~dg---------~i~vwd~~~~~~~~~~~~~---------~~~v~~~~ 548 (1130)
.+.... .+. ....+ ..++..++.++.+| .+..||..+..-....... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 221000 000 00011 12334455555544 4567777665432211111 11224445
Q ss_pred Eec-CCCeEEEeeecCC----CCc---EEEEeeCCCCceeEEE--ecccCceeEEEEEcCCCCEEEEEeCC---------
Q 001184 549 YSA-DGSRLFSCGTSKE----GDS---HLVEWNESEGALKRTY--IGFRKKSAGVVQFDTTRNRILAAGED--------- 609 (1130)
Q Consensus 549 ~s~-~~~~l~~~~~~~~----~~~---~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 609 (1130)
|.. +++.++.++.... ... .|.+||..+....... .........+++..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 544 6777777764210 011 6888998876654432 21222223345667899999998754
Q ss_pred --CcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCCEEEEEeC
Q 001184 610 --NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA 652 (1130)
Q Consensus 610 --g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~~l~~~~~ 652 (1130)
..+.+||..+.+....-..........+..+.|++++++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987664332211111112234556789999999885
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.50 E-value=0.00016 Score=85.32 Aligned_cols=193 Identities=9% Similarity=0.122 Sum_probs=117.0
Q ss_pred EEEEecCCCEEEEEe---------------------C----CeEEEEECCCceeEEEEeC--CCC-------CeEEEEEe
Q 001184 838 CVALSKNDSYVMSAG---------------------G----GKVSLFNMMNFKVMTTFMS--PPP-------ASTFLAFH 883 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~---------------------d----g~i~iwd~~~~~~~~~~~~--~~~-------~i~~l~~s 883 (1130)
.++++++...+..+. | +.|..+|..+++.+-.++. |.. ...-+...
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~ 329 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK 329 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence 467777777776554 1 5799999999999988763 211 11112222
Q ss_pred -CCCC---cEEEEEeCCCcEEEEEeecCeEEEEEecCCC--Ce-------------------------------------
Q 001184 884 -PQDN---NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK--HI------------------------------------- 920 (1130)
Q Consensus 884 -p~~~---~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~--~V------------------------------------- 920 (1130)
. ++ .+++.++.+|.++++|..+|+.+..+..... ..
T Consensus 330 ~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 330 AK-DGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp CS-SSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred cC-CCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 3 45 4788899999999999999998876654320 00
Q ss_pred ------eEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECC
Q 001184 921 ------TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1130)
Q Consensus 921 ------~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 994 (1130)
..++++|+...+++...+-...++..... ...+ .......+...|++ ...++.+..||+.
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~---------~~~g-~~~~g~~~~~~p~~----~~~~G~l~A~D~~ 474 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVS---------YTKG-SAYLGMGFRIKRMY----DDHVGSLRAMDPV 474 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCC---------CCTT-SCCCCEEEEEEESC----SSCSEEEEEECTT
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeeccccc---------ccCC-CceeccceeecCCC----CCCcceEEEEECC
Confidence 13455665556665555544444433210 0000 00001111111221 1235789999999
Q ss_pred CceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCC
Q 001184 995 KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
+|+.+-...... ++..-.....+.+++.++.||.++.||.++|+.+-++..
T Consensus 475 tG~~~W~~~~~~----~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 475 SGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp TCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEecCCC----CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 999887665432 222212223467788899999999999999999988764
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.49 E-value=1.3e-05 Score=98.26 Aligned_cols=247 Identities=11% Similarity=0.013 Sum_probs=132.7
Q ss_pred CEEEEEEe-cCCCeEEEEEeCcC----eEEEEeCCCC-ceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC
Q 001184 349 SVVSMDFH-PFHHTLLVVGCGDG----EITLWDVGLR-ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1130)
Q Consensus 349 ~V~~v~fs-pdg~~llasg~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 422 (1130)
.+...+|| |||++++++...+| .|+++|+.+| +.+.. .+. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KVS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CEE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------ccc---CceeeEEEecCCC
Confidence 78899999 99997555555444 4999999998 63321 011 1134688999999
Q ss_pred EEEEEeCC-----CeEEEEEecCCccceeeeeee-cCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEe-cCCC-ee--e
Q 001184 423 FIGVAFTK-----HLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRVWD-LSGR-KL--F 491 (1130)
Q Consensus 423 ~las~~~d-----~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~i~~s~d~~~l~l~s~s-~d~~v~iwd-~~~~-~~--~ 491 (1130)
.|+....| ..|.++++.++..... ..+. .+......+.|||||+.+++.+.. ....|.++| .++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88887765 2578888877642211 1222 233456788999999963333322 244678888 3331 22 3
Q ss_pred Eec-CCCcCEEEEeecccCCccEEEEEecC--C--cEEEEEccCCcceee-ecCCCc--cEEEEEEecCCCeEEEeeecC
Q 001184 492 QFE-GHEAPVYSVCPHQKENIHFIFSTAVD--G--KIKAWLYDNVGSRVD-YDAPGL--WCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 492 ~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d--g--~i~vwd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
.+. +......++.|+ .++.+++....+ + .|..+++.+...... +..+.. .+..+. +.+..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~--~~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIA--VRSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEE--ECSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEE--EECCEEEEEEE-e
Confidence 333 344455555442 222344444443 3 455566654222122 222332 344444 45666665543 2
Q ss_pred CCCcEEEEeeC-------CCCceeEEEecccCceeEEEEE----cCCCC-EEEEEeCC---CcEEEEeCCCCce
Q 001184 564 EGDSHLVEWNE-------SEGALKRTYIGFRKKSAGVVQF----DTTRN-RILAAGED---NQIKFWDMDNVNM 622 (1130)
Q Consensus 564 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~----~~~~~-~l~~~~~d---g~i~vwd~~~~~~ 622 (1130)
++...|+++++ .+++....+.-.....+..+.+ +++++ .+++.+.. ..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34557788885 3444133332111111222322 34554 44443332 4678888877764
No 268
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.48 E-value=2.3e-05 Score=78.89 Aligned_cols=209 Identities=10% Similarity=0.095 Sum_probs=135.2
Q ss_pred eeEEEEeCCC--CCeEEEEEeCCCCcEEEEEeCCC--cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEe-CCC
Q 001184 865 KVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG-SDA 939 (1130)
Q Consensus 865 ~~~~~~~~~~--~~i~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg 939 (1130)
+.+.++. |. .-...+.|++ +.+..+.+.+| .|+.+|+++++.+.++.-.. .........+++.|.... .++
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCC
Confidence 4555663 43 3467899986 56666666654 89999999999998876433 233333344455555544 578
Q ss_pred cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCceeeeeeecCCC--CCCCeEEEE
Q 001184 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDV--LSSPISSAA 1016 (1130)
Q Consensus 940 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~--~~~~v~~v~ 1016 (1130)
.+.+||.++.+........ . .- ..+.+|+..|+++ .++.|.++|..+.+.+..+..... .-..++.+.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~----~---~G--wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP----G---EG--WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EEEEEETTTTEEEEEEECS----S---CC--CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECCcCcEEEEEeCC----C---Cc--eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 9999999997765544321 1 11 3334567766664 478899999999998888765321 013456677
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCC--CCceeeeEEEEEcCCCCCEEEEEeCCCcE
Q 001184 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASP--NSQTVFPLVVTSHPQEPNQLAVGLTDGSV 1087 (1130)
Q Consensus 1017 ~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v 1087 (1130)
+. +|++.+..-.+..|.+.|..+|+.+..+......+.... .........++|+|....+++||=.--.+
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~ 228 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPML 228 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEE
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcE
Confidence 65 776555554678999999999999998886654332211 11112345689999766677776544433
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.47 E-value=0.00015 Score=85.34 Aligned_cols=192 Identities=11% Similarity=0.029 Sum_probs=117.3
Q ss_pred EEEEcCCCcEEEEe-cCCCeeeEecCCCcCE---------EEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCC
Q 001184 471 IVTCGDDKLIRVWD-LSGRKLFQFEGHEAPV---------YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540 (1130)
Q Consensus 471 l~s~s~d~~v~iwd-~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 540 (1130)
++.++.++.|.-+| .+|+.+-++....... ..+++ .+..++.++.|+.|..+|.++++........
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 44444433488899 7899887775432210 11111 2357888889999999999999888765543
Q ss_pred Cc----cEE-EEEEec---CCC-eEEEeeecC--CCCcEEEEeeCCCCceeEEEecccC---------------------
Q 001184 541 GL----WCT-TMLYSA---DGS-RLFSCGTSK--EGDSHLVEWNESEGALKRTYIGFRK--------------------- 588 (1130)
Q Consensus 541 ~~----~v~-~~~~s~---~~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~--------------------- 588 (1130)
.. .+. +..+.. +|+ .+++++... ..++.|+-+|..+|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 233 455543110 1268999999999998876543110
Q ss_pred -------------------ceeEEEEEcCCCCEEEEEeC--------------------C----CcEEEEeCCCCceeEE
Q 001184 589 -------------------KSAGVVQFDTTRNRILAAGE--------------------D----NQIKFWDMDNVNMLTS 625 (1130)
Q Consensus 589 -------------------~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~vwd~~~~~~~~~ 625 (1130)
......++.|+...++.+.. | +.|..+|..+|+.+-.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00112466677778887663 2 5899999999999888
Q ss_pred EeccCCCC----Ccc-eEEEc---CCCC---EEEEEeCCCcEEEEEcCCCch
Q 001184 626 TEAEGGLP----SLP-RLRFN---KEGN---LLVVTTADQGIKILANADGLR 666 (1130)
Q Consensus 626 ~~~~~~~~----~i~-~v~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~ 666 (1130)
++...+.. .+. -+.+. .+|+ .++.++.+|.++++|..++..
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 76532210 011 12222 4674 788899999999999998843
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.46 E-value=6.8e-05 Score=81.79 Aligned_cols=252 Identities=9% Similarity=0.042 Sum_probs=147.4
Q ss_pred cceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcc---ee-----ccCCCCCCCceeEE
Q 001184 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLL---MT-----NDVPENAEDVVPCV 839 (1130)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~---~~-----~~~~~~~~~~i~~l 839 (1130)
.....+++.++|..+++...++.|..|+....... .|....... .. ... ......+..+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~p~gi 85 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV------------DFAYASPYWNKAFCENSTDAEK-RPLCGRTYDI 85 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE------------EEEESCTTCCHHHHTTCCCGGG-HHHHCCEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE------------EEecccccccccccccccchhc-cccCCCCceE
Confidence 34557889999887888777888888764332110 010000000 00 000 0011346889
Q ss_pred EEec-CCCEEEEEeCCeEEEEECCCceeEEEEe---C-CCCCeEEEEEeCCCCcEEEEEeC-----------------CC
Q 001184 840 ALSK-NDSYVMSAGGGKVSLFNMMNFKVMTTFM---S-PPPASTFLAFHPQDNNIIAIGME-----------------DS 897 (1130)
Q Consensus 840 ~~s~-dg~~la~~~dg~i~iwd~~~~~~~~~~~---~-~~~~i~~l~~sp~~~~~lasg~~-----------------dg 897 (1130)
++++ +|+++++...+.|..+|..+++...... + .......+++.+.++.+.++-.. ++
T Consensus 86 ~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 86 SYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp EEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred EEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence 9997 6665555446668899987664322111 1 12346789998823455544322 36
Q ss_pred cEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEE-eCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCC
Q 001184 898 TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS-GSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1130)
Q Consensus 898 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 976 (1130)
.|..||..+++....... ......|+++|||++|..+ +..+.|.+|++............. .+. ...+++.++
T Consensus 166 ~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~----~~g-P~gi~~d~~ 239 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK----IPN-PGNIKRNAD 239 (322)
T ss_dssp EEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE----CSS-EEEEEECTT
T ss_pred eEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe----CCC-CCCeEECCC
Confidence 788888777764332222 2335679999999866655 556889999988632211111111 112 677899999
Q ss_pred CcEEEEEc-----------CCcEEEEECCCceeeeeeecCCCC-CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 977 QVRLLVNH-----------ETQLAIYDGSKMECIRQWVPQDVL-SSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 977 ~~~l~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~-~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
|.+.++.. .+.|..+|.. ++.+..+....+. -..++++++ .++++.++....+.|.++++..
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 98777743 3568888874 7777666544221 235667776 4666666666788899998763
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.43 E-value=0.00011 Score=79.37 Aligned_cols=228 Identities=15% Similarity=0.089 Sum_probs=138.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEc-CCC-cEEEEe-cC
Q 001184 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDK-LIRVWD-LS 486 (1130)
Q Consensus 410 ~~V~~v~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s-~d~-~v~iwd-~~ 486 (1130)
.....++|+++|+++++...++.|..||..++. ... + ........+++.++|+ ++++.. .++ .|..+| .+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 457789999999977777788999999987532 211 1 1234688999999998 444443 333 466677 56
Q ss_pred CCeeeEec-CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceee-e-------c--CCCccEEEEEEecCCCe
Q 001184 487 GRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-Y-------D--APGLWCTTMLYSADGSR 555 (1130)
Q Consensus 487 ~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~~~~ 555 (1130)
++...... ........++.. .++..+++...++.|.++|......... . . ..-.....+ ++++++
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 65432222 112223444432 2334455544678888888764321111 0 0 111234555 888888
Q ss_pred EEEeeecCCCCcEEEEeeCCC-Cce--eEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCC
Q 001184 556 LFSCGTSKEGDSHLVEWNESE-GAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 632 (1130)
|+++.. ..+.|+.++... ++. ...+... .....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 777653 367899999864 332 1222111 134458899999877776677899999975 6553322222223
Q ss_pred CCcceEEEc---CCCCEEEEEeCCC
Q 001184 633 PSLPRLRFN---KEGNLLVVTTADQ 654 (1130)
Q Consensus 633 ~~i~~v~~s---~~~~~l~~~~~dg 654 (1130)
....+++|. |+++.|++++..+
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEecccCCCCEEEEECCCC
Confidence 357899998 8888887776543
No 272
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.43 E-value=6.4e-05 Score=82.02 Aligned_cols=255 Identities=9% Similarity=-0.006 Sum_probs=142.6
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccc--ee-e---eeecCCCccEEEEEEcC-CC
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMM--LQ-A---AIVKDSSISVSRVAWSP-DG 421 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~h~~~V~~v~~sp-dg 421 (1130)
...+++|+|+|+ ++.++..++.|..||..+++... |........ .. . .........+..+++.+ +|
T Consensus 20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp CCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 456788999997 47778888999999987665431 100000000 00 0 00000113578999998 66
Q ss_pred CEEEEEeCCCeEEEEEecCCccceeeee-eec-CCCCeeEEEEec-CCCceEEEEEcC-----------------CCcEE
Q 001184 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLE-IDA-HVGGVNDLAFSY-PNKQLCIVTCGD-----------------DKLIR 481 (1130)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~-~~~-h~~~V~~i~~s~-d~~~l~l~s~s~-----------------d~~v~ 481 (1130)
+ |.++...+.|..+|..++.. ..... ..+ .......+++.+ +|+ +.++... ++.|.
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred c-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEE
Confidence 5 44454445588888775532 21111 111 123478899999 887 4555332 36788
Q ss_pred EEecCCCeeeEecCCCcCEEEEeecccCCccEEEEE-ecCCcEEEEEccCCc--ceeeecCCCccEEEEEEecCCCeEEE
Q 001184 482 VWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST-AVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSADGSRLFS 558 (1130)
Q Consensus 482 iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1130)
.||..+..+..+.........++++ +++..|+.+ +..+.|.+|++.... ....+..... ...+++.++|++.++
T Consensus 169 ~~d~~~~~~~~~~~~~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 169 KYDPSTKETTLLLKELHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EEETTTTEEEEEEEEESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred EEeCCCCEEEEeccCCccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence 8884433333332222334567775 455655444 667899999987521 1111111122 788999999987666
Q ss_pred eeecC------CCCcEEEEeeCCCCceeEEEecccC---ceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 559 CGTSK------EGDSHLVEWNESEGALKRTYIGFRK---KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 559 ~~~~~------~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
..... ...+.|..+|. .++.+..+..... ..+..+++ .++..+++...++.|.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 53200 01357888986 4777777764321 23555555 3454444445677888888753
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.42 E-value=0.00019 Score=77.50 Aligned_cols=242 Identities=9% Similarity=0.030 Sum_probs=142.5
Q ss_pred cCCcccceeeeccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccE
Q 001184 333 LDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISV 412 (1130)
Q Consensus 333 ~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 412 (1130)
.+..+.+++..+........++|+|+|+ ++++-..++.|..||..++. .. .+ .....+
T Consensus 17 ~~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~---------------~~~~~p 74 (306)
T 2p4o_A 17 IELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HA---------------TVEGKV 74 (306)
T ss_dssp BCCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EE---------------ECSSEE
T ss_pred CcCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EE---------------eCCCCc
Confidence 3344566666666557889999999997 67776678999999987532 21 11 112368
Q ss_pred EEEEEcCCCCEEEEEeCCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecC-CC-
Q 001184 413 SRVAWSPDGNFIGVAFTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-GR- 488 (1130)
Q Consensus 413 ~~v~~spdg~~las~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~-~~- 488 (1130)
..++++++|+++++..... .|..+|..+++. .....+. .......++..+++. .+++-..++.|.++|.. +.
T Consensus 75 ~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-~~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~ 150 (306)
T 2p4o_A 75 SGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-ETLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSG 150 (306)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-EEEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEE
T ss_pred eeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-EEEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcE
Confidence 8999999999766654332 466677777653 2222221 222345555555554 55666668889999843 32
Q ss_pred eeeEec---------CCCcCEEEEeecccCCcc-EEEEEecCCcEEEEEccCCcc---eeeecCCCccEEEEEEecCCCe
Q 001184 489 KLFQFE---------GHEAPVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSR 555 (1130)
Q Consensus 489 ~~~~~~---------~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~ 555 (1130)
.+.... +.-...+.+ ++ ++. ++++-...++|..++++.... ...+. .......++++++|+.
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~pngi--s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l 225 (306)
T 2p4o_A 151 SIWLEHPMLARSNSESVFPAANGL--KR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNL 225 (306)
T ss_dssp EEEEECGGGSCSSTTCCSCSEEEE--EE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCE
T ss_pred eEEEECCccccccccCCCCcCCCc--Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCE
Confidence 121111 111233444 33 334 445556678999999875211 11111 0123456899999987
Q ss_pred EEEeeecCCCCcEEEEeeCCCCceeEEEeccc-CceeEEEEEc---CCCCEEEEEeCCC
Q 001184 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFR-KKSAGVVQFD---TTRNRILAAGEDN 610 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~---~~~~~l~~~~~dg 610 (1130)
+++... .+.|.++|.. ++......... .....+++|. ++++.|+.++..+
T Consensus 226 ~va~~~----~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 226 YGATHI----YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEECBT----TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEEeCC----CCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 665542 6789999975 65533211111 1357788998 7888777766543
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.30 E-value=0.00048 Score=70.53 Aligned_cols=200 Identities=10% Similarity=0.081 Sum_probs=128.8
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
-...+..++|+|+++.|+++...++.|...|.. ++.+...+ +.+ ....-.|++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence 345799999999988778878889999999998 77665311 222 24577889999998777
Q ss_pred EEeCCCeEEEEEecCCccce--eeeee----ecCCCCeeEEEEecCCCceEEEEEcCCC--cEEEEe--cCCCeeeEec-
Q 001184 426 VAFTKHLIHLYTYQGSNDLC--QSLEI----DAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWD--LSGRKLFQFE- 494 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~--~~~~~----~~h~~~V~~i~~s~d~~~l~l~s~s~d~--~v~iwd--~~~~~~~~~~- 494 (1130)
+.-.++.+.++++.....+. ....+ ...+.....++|.|+++. |+++.... .|..|+ ..+..+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecc
Confidence 76667889999887654322 11111 123456799999999985 33343333 455555 1222222221
Q ss_pred ------CCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC---------ccEEEEEEecCCCeEEEe
Q 001184 495 ------GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------LWCTTMLYSADGSRLFSC 559 (1130)
Q Consensus 495 ------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~ 559 (1130)
.+...+.+++++|.. +.+++.....+.+.++|.... ....+.... .....|+|.++|+..++
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv- 240 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV- 240 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-
T ss_pred hhhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-
Confidence 133457888898754 467777777788888887644 333222221 25789999999986555
Q ss_pred eecCCCCcEEEEee
Q 001184 560 GTSKEGDSHLVEWN 573 (1130)
Q Consensus 560 ~~~~~~~~~i~~wd 573 (1130)
+. .+.++.+.
T Consensus 241 sE----~n~~y~f~ 250 (255)
T 3qqz_A 241 SE----PNRFYRFT 250 (255)
T ss_dssp ET----TTEEEEEE
T ss_pred cC----CceEEEEE
Confidence 32 45666664
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.28 E-value=0.0031 Score=68.47 Aligned_cols=278 Identities=10% Similarity=0.040 Sum_probs=148.8
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 425 (1130)
....+.+|.|.+++. ++++| .+|.| +...+.|+. |..... ........+.+|+|++ ++.++
T Consensus 34 ~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~t--------W~~~~~-------~~~~~~~~~~~i~~~~-~~~~~ 94 (327)
T 2xbg_A 34 TTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQT--------WEPRTL-------VLDHSDYRFNSVSFQG-NEGWI 94 (327)
T ss_dssp CSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSS--------CEECCC-------CCSCCCCEEEEEEEET-TEEEE
T ss_pred CCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCC--------CeECCC-------CCCCCCccEEEEEecC-CeEEE
Confidence 345799999988876 46654 56654 334444431 111000 0112344688999986 44444
Q ss_pred EEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEE-EEecCCC-eeeEecCCCcCEEEE
Q 001184 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR-VWDLSGR-KLFQFEGHEAPVYSV 503 (1130)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~-iwd~~~~-~~~~~~~h~~~v~~~ 503 (1130)
++.++.|.. ..+.|+.-........+.+.+..+.+.+++. +++.+. ++.|. -.| .|+ -.....++...+..+
T Consensus 95 -~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~S~D-gG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 95 -VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYRTKD-SGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp -EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEEESS-TTSSEEEEECSCCCCEEEE
T ss_pred -EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEEEcC-CCCCCEEeecCCCcceEEE
Confidence 455664433 3344544332211112345678888887776 555554 55443 333 232 222333556678888
Q ss_pred eecccCCccEEEEEecCCcEEE-EEccCCcceee-ecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 504 CPHQKENIHFIFSTAVDGKIKA-WLYDNVGSRVD-YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~v-wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
.+.+ ++.+++.+ .+|.+.. +|-. +..-.. -......+..+.+.++++.++++. ++.+++.+...++...
T Consensus 169 ~~~~--~~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 169 NRSP--SGEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWG 239 (327)
T ss_dssp EECT--TSCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEEC
T ss_pred EEcC--CCcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeE
Confidence 8765 44555554 4454433 3320 111111 122345688899999988776553 5677766422233222
Q ss_pred EEecc---cCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEecc-CCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001184 582 TYIGF---RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-GGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1130)
Q Consensus 582 ~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~i~~v~~s~~~~~l~~~~~dg~i~ 657 (1130)
.+... ....+..+.+.+++..++++ .+|.| .+..+.|+.-..+... .....+.++.|.+++. +++++.+|.|.
T Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~ 316 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILL 316 (327)
T ss_dssp CCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEE
T ss_pred eccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEE
Confidence 22211 11246778888876655554 56777 4556666655555422 1123578898875554 66677888776
Q ss_pred EEE
Q 001184 658 ILA 660 (1130)
Q Consensus 658 iw~ 660 (1130)
-++
T Consensus 317 ~~~ 319 (327)
T 2xbg_A 317 RYV 319 (327)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.28 E-value=0.0012 Score=72.47 Aligned_cols=248 Identities=13% Similarity=0.025 Sum_probs=151.3
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las 426 (1130)
.+..+|.+..++. .++++ ....|+..++....... +..+ ...+..++|++.+..|..
T Consensus 33 ~d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~-------------------~~~~-~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL-------------------LLNN-LENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEE-------------------EECS-CSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCc-eeEee--cccceEEEeCCCCeeEE-------------------eecC-CCceEEEEEeccccEEEE
Confidence 3455676666644 34443 34568888887554322 1222 335889999986665554
Q ss_pred E-eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEe
Q 001184 427 A-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVC 504 (1130)
Q Consensus 427 ~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~ 504 (1130)
. ...+.|..+++.++.... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ........++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 4 467889999988754221 12222345678999986664 5566666789999997666544443 3345678888
Q ss_pred ecccCCccEEEEEecC-CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEE
Q 001184 505 PHQKENIHFIFSTAVD-GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1130)
+.|.. +.++++-... +.|...+++...........-.....++++|++..|+.+-. ..+.|..+|.........+
T Consensus 166 vdp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETTT-TEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecCc-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 87533 3455555555 78888887754443333333446889999998888877643 3678999997643333233
Q ss_pred ecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001184 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
... ......+++. .+..+++-...+.|..++..+|+....+.
T Consensus 242 ~~~-~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQG-LPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSS-CSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCC-CCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 222 2234456663 34444444456778888766666555554
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.27 E-value=0.00075 Score=75.25 Aligned_cols=246 Identities=13% Similarity=0.027 Sum_probs=151.0
Q ss_pred CEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEE-EE
Q 001184 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG-VA 427 (1130)
Q Consensus 349 ~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la-s~ 427 (1130)
.-.|.+..+.+ +++++ ....|+..++.++.... +. .....+..++|++.+..|. +-
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~-------------------~~-~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL-------------------LL-NNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE-------------------EE-CSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE-------------------Ee-cCCCccEEEEEecCCCeEEEEe
Confidence 34466655643 34443 34578888887654332 12 2234588999998665555 44
Q ss_pred eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEeec
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPH 506 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~~~ 506 (1130)
...+.|..++..++.... .+.........+++.+.+.. ++++-...+.|.+.+..|.....+. ........+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 566889999988754211 12222334678899986664 4566666788999996666544443 333567888886
Q ss_pred ccCCccEEEEEecC-CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEec
Q 001184 507 QKENIHFIFSTAVD-GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1130)
Q Consensus 507 ~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1130)
|.. +.+.++-... +.|..++++...........-.....++++|++..|+.+-. ..+.|..+|.........+..
T Consensus 211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 533 3444454444 67888887765444444444456889999998888877643 367899999764433333322
Q ss_pred ccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001184 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
. ......+++. .+..+++-...+.|..++..+++....+.
T Consensus 287 ~-~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 287 G-LPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp S-CSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred C-CCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 2 2234556663 34455555567788888877776666654
No 278
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.23 E-value=0.036 Score=70.29 Aligned_cols=605 Identities=9% Similarity=0.039 Sum_probs=303.0
Q ss_pred ceeeeccCCCCEEEEEEecCC----CeEEEEEe--CcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccE
Q 001184 339 AVACTMHQGSSVVSMDFHPFH----HTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISV 412 (1130)
Q Consensus 339 ~~~~~~~h~~~V~~v~fspdg----~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 412 (1130)
.++..+..-++|..++..... ..++++++ .+|.+++..-.-+-.... ..-+.+ -..+
T Consensus 366 ~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~----------------~~~l~g-v~~i 428 (1158)
T 3ei3_A 366 VAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHA----------------SIDLPG-IKGL 428 (1158)
T ss_dssp EEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEE----------------EECCCS-CCEE
T ss_pred EeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEE----------------eecCCC-ccEE
Confidence 345556677899998886532 24454443 467888875432211110 001121 2345
Q ss_pred EEEEEc---CCCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEe--cCCCceEEEEEcCCCcEEEEe-cC
Q 001184 413 SRVAWS---PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS--YPNKQLCIVTCGDDKLIRVWD-LS 486 (1130)
Q Consensus 413 ~~v~~s---pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s--~d~~~l~l~s~s~d~~v~iwd-~~ 486 (1130)
+.+... ....||+.+..+.+ .|+.+... .+... ...+-......++.. .++ .++=.. .+.|++.+ ..
T Consensus 429 Wtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev-~~~gf~~~~~TL~~~~l~~~---~ivQVt-~~~Irli~~~~ 501 (1158)
T 3ei3_A 429 WPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET-ELMGFVDDQQTFFCGNVAHQ---QLIQIT-SASVRLVSQEP 501 (1158)
T ss_dssp EEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE-CCTTCCSSSCEEEEEEETTT---EEEEEE-SSCEEEEESSS
T ss_pred EEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc-ccccccCCCCcEEEEEcCCC---eEEEEe-cCEEEEEECCC
Confidence 555443 23568887777666 56666432 22211 111111111111111 122 122222 23566777 44
Q ss_pred CCeeeEecCC-CcCEEEEeecccCCccEEEEEecCCcEEEEEccCCccee-eecCCCccEEEEEEecC------CCeEEE
Q 001184 487 GRKLFQFEGH-EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSAD------GSRLFS 558 (1130)
Q Consensus 487 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~~------~~~l~~ 558 (1130)
+..+..+... ...|...+.+ + ..++.++ .+.+.++.++.++... ....-...|.|+++.|. ++++++
T Consensus 502 ~~~~~~w~~p~~~~I~~As~n---~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aV 576 (1158)
T 3ei3_A 502 KALVSEWKEPQAKNISVASCN---S-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAI 576 (1158)
T ss_dssp CCEEEEECCTTCCCCCEEEEC---S-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEE
T ss_pred CeEEEEEECCCCCEEEEEEeC---C-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEE
Confidence 4556566533 3356666542 2 3455554 6778888776543211 11112446999998863 357777
Q ss_pred eeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEc--CCCCEEEEEeCCCcEEEEeC--CCCceeEEEeccCCCCC
Q 001184 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFD--TTRNRILAAGEDNQIKFWDM--DNVNMLTSTEAEGGLPS 634 (1130)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~ 634 (1130)
+.. .+++++++++.+.+.+....-.......++.+. ....++..|-.||.+.-+.+ .+|+....-...-+..+
T Consensus 577 g~~---~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~p 653 (1158)
T 3ei3_A 577 GLW---TDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQP 653 (1158)
T ss_dssp EET---TTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSC
T ss_pred EEC---CCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCc
Confidence 763 378999999987665544332111122233222 23357888999998765544 45555433211112224
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCC
Q 001184 635 LPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARP 714 (1130)
Q Consensus 635 i~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~ 714 (1130)
+.-..+...+..-+.+..+....++..... +. +.. +.......+..|+..
T Consensus 654 v~L~~~~~~~~~~V~a~s~rp~liy~~~~~---l~-~s~-----------l~~~~v~~~~~F~se--------------- 703 (1158)
T 3ei3_A 654 TVLRTFRSLSTTNVFACSDRPTVIYSSNHK---LV-FSN-----------VNLKEVNYMCPLNSD--------------- 703 (1158)
T ss_dssp CEEEEEESSSCEEEEEESSSCEEEEESSSS---EE-EEE-----------BSSSCCCEEEEECCS---------------
T ss_pred eEEEEEeeCCceeEEEECCCCEEEEEcCCc---eE-Eec-----------cChHHhceEeccCcc---------------
Confidence 444444444443334444555555543221 00 000 000000011112111
Q ss_pred cccccCCCccccCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCeEEee
Q 001184 715 STILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLW 794 (1130)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw 794 (1130)
.. .+.++ ...++.+++..++... ......+|- ...+..++++|+.+.++++..+... +
T Consensus 704 ----------~~--~~g~v-~~~~~~LrI~~i~~~~---~~~~~~ipL----~~Tprri~y~~~~~~~~v~~~~~~~--~ 761 (1158)
T 3ei3_A 704 ----------GY--PDSLA-LANNSTLTIGTIDEIQ---KLHIRTVPL----YESPRKICYQEVSQCFGVLSSRIEV--Q 761 (1158)
T ss_dssp ----------SS--TTEEE-EECSSCEEEEEECCSS---SEEEEEEEC----SSEEEEEEEEGGGTEEEEEEEEEEE--E
T ss_pred ----------cC--CCcEE-EEcCCceEEEEecccC---CeeEEEEeC----CCCceEEEEcCCCCEEEEEEEeccc--c
Confidence 00 11122 2223557777765431 222222332 3577899999998877766543221 1
Q ss_pred ecCCC-----------------------------CCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEE---e
Q 001184 795 KWNRT-----------------------------EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVAL---S 842 (1130)
Q Consensus 795 ~~~~~-----------------------------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~---s 842 (1130)
+.... ....-+.......+++.|+.+.+.+..... .....+.+++. .
T Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l-~~nE~~~sv~~v~~~ 840 (1158)
T 3ei3_A 762 DTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQF-LQNEYALSLVSCKLG 840 (1158)
T ss_dssp CSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECCT
T ss_pred ccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeC-CCCcceEEEEEEEEc
Confidence 11000 000001111233566777776664432211 23445555554 2
Q ss_pred c-CCCEEEEEe-----------CCeEEEEECCCceeEEEEe-CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE
Q 001184 843 K-NDSYVMSAG-----------GGKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1130)
Q Consensus 843 ~-dg~~la~~~-----------dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 909 (1130)
. ...++++|. .|.|.+|++..++.....+ ...+.+++++--. |++||.. ...|++|++...+.
T Consensus 841 ~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~--g~Lla~i--g~~l~vy~l~~~~~ 916 (1158)
T 3ei3_A 841 KDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN--GKLLASI--NSTVRLYEWTTEKE 916 (1158)
T ss_dssp TCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET--TEEEEEE--TTEEEEEEECTTSC
T ss_pred cCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC--CEEEEEc--CCEEEEEECCCCce
Confidence 2 246888774 2669999987554332222 2357788887654 5555433 57899999987654
Q ss_pred EE-EEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcE
Q 001184 910 KT-KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQL 988 (1130)
Q Consensus 910 ~~-~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i 988 (1130)
+. ... +-..|..+.....+++++.|+.-..|.+...+... ...........+..++++.|-.++.++++..++.+
T Consensus 917 L~~~~~-~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~---~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl 992 (1158)
T 3ei3_A 917 LRTECN-HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME---GNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNL 992 (1158)
T ss_dssp EEEEEE-ECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT---TEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEE
T ss_pred EEEEee-ccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC---CeEEEEEeecccccEEEEEEEccCcEEEEcCCCcE
Confidence 33 222 22224433443457899999988888776654322 12222233344578899999888877777788888
Q ss_pred EEEECCCc-------eeeeeeecCCCCCCCeEEEE---ECCC---------CCEEEEEeCCCcEEEEe
Q 001184 989 AIYDGSKM-------ECIRQWVPQDVLSSPISSAA---YSCN---------SQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 989 ~v~d~~~~-------~~~~~~~~~~~~~~~v~~v~---~s~d---------g~~l~t~~~Dg~i~vwd 1037 (1130)
.++..... ..+... .+-.....|+++. +.+. ...++.++.+|.|.+.-
T Consensus 993 ~vl~~~~~~~~~~~~~~L~~~-~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 993 FVCQKDSAATTDEERQHLQEV-GLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EEEEECTTCCSTTGGGBEEEE-EEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred EEEecCCCCCCccccceeeeE-EEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 88865431 111111 1111145777776 3332 23577788899988873
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.18 E-value=0.001 Score=71.81 Aligned_cols=207 Identities=9% Similarity=-0.069 Sum_probs=130.6
Q ss_pred CCceeEEEEecCCCEEEEEe--CCeEEEEECCC----ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001184 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMN----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 906 (1130)
......++|++++..|..+. .+.|..+++.+ ......+.........+++.+.++.+.++-..++.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578899998877776665 58899999876 2222233333345678999874556666666778999999875
Q ss_pred CeEEEEEecCCCCeeEEEEccCCCeEEEEeCC--CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-
Q 001184 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSD--AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN- 983 (1130)
Q Consensus 907 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~- 983 (1130)
......+........++++.|++.+|+.+... +.|...+++.... .. +... .-.....+++++++..|..+
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~--~~~~---~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS--LVTE---NIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EE--EECS---SCSCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EE--EEEC---CCCCceEEEEeccCCEEEEEE
Confidence 54433344344567899999977776666543 6788888765221 11 1111 11456789999988777764
Q ss_pred -cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCccccccc
Q 001184 984 -HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1130)
Q Consensus 984 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~ 1047 (1130)
..+.|..+|... .....+............+++. ++.++++-...+.|..++..+|+....+
T Consensus 183 ~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 183 SKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 467899999874 3333332211112345678875 3555555556788999998777755444
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.16 E-value=0.00092 Score=68.43 Aligned_cols=205 Identities=12% Similarity=0.074 Sum_probs=131.7
Q ss_pred CCCCceeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEEEeC-CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 831 NAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
+-...+..++++|++..|.+.. ++.|...|.. ++.++.+.. .....-.+++.+ ++.++++.-.++.+.++++...
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTT
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCC
Confidence 3455799999999877666544 6789999998 888887753 235678889988 7777666667788999998754
Q ss_pred eE---EEEEe------cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCC---CcccceeeEe-ccCCCCCCCeEEEEEc
Q 001184 908 EV---KTKLK------GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT---WEKRKSIAIQ-LPAGKLPVGETRVQFH 974 (1130)
Q Consensus 908 ~~---~~~l~------~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~---~~~~~~~~~~-~~~~~~~~~v~~~~~s 974 (1130)
.. +.... .+.....+|+|+|+++.|.++.......+|.++. .......... ......-.....++++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence 32 22222 1234468999999998888877766666666652 1101110000 0001112457899999
Q ss_pred CCCcEEEE-E-cCCcEEEEECCCceeeeeeecCCCC------CCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 001184 975 SDQVRLLV-N-HETQLAIYDGSKMECIRQWVPQDVL------SSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1130)
Q Consensus 975 ~d~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~~------~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~ 1039 (1130)
|....|.+ + ..+.+.++|.. |+.+..+....+. -..-..|+|.++|+ |+..++.+.++++.-.
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 97655554 5 46778888866 5555555443211 12568999999998 4445777777777543
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.15 E-value=0.0015 Score=71.64 Aligned_cols=211 Identities=9% Similarity=-0.051 Sum_probs=133.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.....+..++|++.+..++.+-...+.|..+++.++.... +..........+++.+.+..|
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~~~g~l 130 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDWVHDKL 130 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEE
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-------------------EEeCCCCCccEEEEecCCCeE
Confidence 3445689999998777677776677899999988664322 111222345789999865554
Q ss_pred -EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC-CcEEEEecCCCeeeEecC-CCcCEE
Q 001184 425 -GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-KLIRVWDLSGRKLFQFEG-HEAPVY 501 (1130)
Q Consensus 425 -as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d-~~v~iwd~~~~~~~~~~~-h~~~v~ 501 (1130)
.+-...+.|.+.++.+... .. .+.........+++.|.+.. ++++-... +.|...+.+|.....+.. .-...+
T Consensus 131 y~~d~~~~~I~~~~~dG~~~-~~--l~~~~l~~P~~iavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~Pn 206 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAHR-KV--LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPN 206 (349)
T ss_dssp EEEETTTTEEEEEETTSCSC-EE--EECTTCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEESCCSSCSCEE
T ss_pred EEEcCCCCeEEEEcCCCCce-EE--EEeCCCCCcceEEEecCcCe-EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcc
Confidence 4555567899999876432 11 12333456789999997764 44454444 788888877766555532 234567
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
.+++++.. +.+.++-...+.|..++++.......+.........+++. . ..++.+.. +.+.|..++..+|+...
T Consensus 207 Gla~d~~~-~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~-~~ly~td~---~~~~V~~~~~~~G~~~~ 280 (349)
T 3v64_C 207 GLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-E-DSLYWTDW---HTKSINSANKFTGKNQE 280 (349)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-T-TEEEEEET---TTTEEEEEETTTCCSCE
T ss_pred eEEEeCCC-CEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-C-CEEEEecC---CCCeEEEEEccCCCccE
Confidence 88886533 3455555667889999987654444343334456778873 3 34444432 26778888766676655
Q ss_pred EEe
Q 001184 582 TYI 584 (1130)
Q Consensus 582 ~~~ 584 (1130)
.+.
T Consensus 281 ~i~ 283 (349)
T 3v64_C 281 IIR 283 (349)
T ss_dssp EEE
T ss_pred Eec
Confidence 554
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.15 E-value=0.0073 Score=65.12 Aligned_cols=230 Identities=11% Similarity=-0.004 Sum_probs=139.5
Q ss_pred cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE-eCCCeEEEEEecCC---ccc
Q 001184 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGS---NDL 444 (1130)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~-~~d~~i~vwd~~~~---~~~ 444 (1130)
...|+..|+.+++... +. .....+..++|++++..|..+ ..++.|..+++.+. ...
T Consensus 9 ~~~I~~i~~~~~~~~~-------------------~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~ 68 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTS-------------------LI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68 (316)
T ss_dssp BSSEEEEETTSCCCEE-------------------EE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred CCeEEEEECCCcceEe-------------------hh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc
Confidence 4579999998765432 11 223467899999976655544 45689999998761 212
Q ss_pred eeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecC-Cc
Q 001184 445 CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVD-GK 522 (1130)
Q Consensus 445 ~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d-g~ 522 (1130)
.. .+.........+++.+.+.. +.++-...+.|.+.|..|.....+. ........+++.|.. +.++++.... +.
T Consensus 69 ~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~-g~ly~~d~~~~~~ 144 (316)
T 1ijq_A 69 DT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAK 144 (316)
T ss_dssp EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCE
T ss_pred EE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCC-CEEEEEccCCCCe
Confidence 21 12222345689999976654 4566667889999997676554443 234567888886533 3344444333 67
Q ss_pred EEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecc--cCceeEEEEEcCCC
Q 001184 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF--RKKSAGVVQFDTTR 600 (1130)
Q Consensus 523 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--~~~~v~~~~~~~~~ 600 (1130)
|...+++...........-.....+++++++..|+.+-. ..+.|..+|.... ..+.+... .......+++. .+
T Consensus 145 I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~ 219 (316)
T 1ijq_A 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-ED 219 (316)
T ss_dssp EEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TT
T ss_pred EEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CC
Confidence 888887654433333333456889999998888877643 3678999998643 33333211 11123456664 34
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001184 601 NRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 601 ~~l~~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
..+++-...+.|..++..+++.+..+.
T Consensus 220 ~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 220 KVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 444555566788888887776555543
No 283
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.14 E-value=0.0071 Score=65.57 Aligned_cols=195 Identities=12% Similarity=0.078 Sum_probs=114.6
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEE-EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEE-EEe--ecCeE
Q 001184 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQI-YNV--RVDEV 909 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~i-wd~--~~~~~ 909 (1130)
..+..+++.+++..++++.+|.|..- ...++.-.. .......+..+++.+ ++.+++++. +|.++. +|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 34677888788887777766654321 222322222 234456788999999 778877664 454443 331 23333
Q ss_pred EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEE
Q 001184 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLA 989 (1130)
Q Consensus 910 ~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~ 989 (1130)
+. ......+..+++.+++..+ .++.+|.+++++.+.++.-.. ...+.......+..+++.+++.+++++.++.+
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~--~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i- 272 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGE--LLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL- 272 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECC--CBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-
T ss_pred CC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEe--ccCCcccCCcceEEEEecCCCEEEEEeCCCeE-
Confidence 32 2345678999999988655 456678887775332211000 11110011135788999999998888888877
Q ss_pred EEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 001184 990 IYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 990 v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
.+..+.|+.-..+.........+.++.|.++++ +++++.+|.|.-++-
T Consensus 273 ~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 273 LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 445555554443332211235678899986655 555667998877763
No 284
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.12 E-value=0.00099 Score=74.25 Aligned_cols=212 Identities=9% Similarity=-0.049 Sum_probs=133.7
Q ss_pred cCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE
Q 001184 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1130)
Q Consensus 345 ~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 424 (1130)
.....+..++|++.+.+++.+-...+.|..++..++.... +..........+++.+.+..|
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~~~g~l 173 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDWVHDKL 173 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------------EECSSCSCCCCEEEETTTTEE
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------------EEeCCCCCccEEEEEeCCCeE
Confidence 3445789999998777677776677899999988665322 111222345678999865554
Q ss_pred -EEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC-CcEEEEecCCCeeeEec-CCCcCEE
Q 001184 425 -GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-KLIRVWDLSGRKLFQFE-GHEAPVY 501 (1130)
Q Consensus 425 -as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d-~~v~iwd~~~~~~~~~~-~h~~~v~ 501 (1130)
++-...+.|.+.++.+..... .+.........+++.|.+.. ++++-... +.|...+..|.....+. ..-...+
T Consensus 174 Y~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~Pn 249 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPN 249 (386)
T ss_dssp EEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEE
T ss_pred EEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCee
Confidence 444556788888887643211 22333456789999998775 34444444 77888887776555543 2334567
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeE
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1130)
.+++++.. +.+.++-+..+.|..+|++.......+.........+++. .+ .++.+.. +.+.|..++..+++...
T Consensus 250 Glavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~---~~~~V~~~~~~~G~~~~ 323 (386)
T 3v65_B 250 GLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDW---HTKSINSANKFTGKNQE 323 (386)
T ss_dssp EEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEET---TTTEEEEEETTTCCSCE
T ss_pred eEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEeeC---CCCeEEEEECCCCcceE
Confidence 88887543 3455555667889999987654444443334456778873 33 4444432 36778888866776666
Q ss_pred EEec
Q 001184 582 TYIG 585 (1130)
Q Consensus 582 ~~~~ 585 (1130)
.+..
T Consensus 324 ~i~~ 327 (386)
T 3v65_B 324 IIRN 327 (386)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 6553
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.06 E-value=0.0022 Score=71.73 Aligned_cols=232 Identities=8% Similarity=-0.010 Sum_probs=143.9
Q ss_pred CEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC----eEEEEEecCCCCee
Q 001184 846 SYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD----EVKTKLKGHQKHIT 921 (1130)
Q Consensus 846 ~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~----~~~~~l~~h~~~V~ 921 (1130)
.+|+.+....|+..++.+........ ....+..++|++.++.+..+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 46666677889999998766554443 45678899999855555555556788999988752 22333333445678
Q ss_pred EEEEccCCCeEE-EEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc---CCcEEEEECCCce
Q 001184 922 GLAFSTNLNILV-SSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH---ETQLAIYDGSKME 997 (1130)
Q Consensus 922 ~l~~s~dg~~L~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d~~i~v~d~~~~~ 997 (1130)
+|++.+.+..|+ +-...+.|.+.+++....... .. . .......+++.|.+.+|+.+. .+.|...++....
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l--~~-~---~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--FR-E---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE--EE-C---SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEE--Ee-C---CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 999988555554 445577898988876432111 11 1 114568899999777766643 4678888887433
Q ss_pred eeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCC
Q 001184 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPN 1076 (1130)
Q Consensus 998 ~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1130)
........ -.....++++++++.|+.+. ..+.|..+|++.......+.... .-..+..++.. ++.
T Consensus 237 ~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~---------~l~~P~gl~v~--~~~ 302 (400)
T 3p5b_L 237 IYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK---------RLAHPFSLAVF--EDK 302 (400)
T ss_dssp CEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS---------TTSSEEEEEEE--TTE
T ss_pred cEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC---------CCCCCEEEEEe--CCE
Confidence 32222221 24678999999888777665 45789999987544322221100 01112234332 356
Q ss_pred EEEEEeCCCcEEEEeCCCCccC
Q 001184 1077 QLAVGLTDGSVKVIEPSETERK 1098 (1130)
Q Consensus 1077 ~l~s~~~Dg~v~vW~~~~~~~~ 1098 (1130)
++++-...+.|..++..+++..
T Consensus 303 lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 303 VFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp EEEEESSSCSEEEEESSSCCCC
T ss_pred EEEecCCCCeEEEEEcCCCCce
Confidence 7777777788999987666544
No 286
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.05 E-value=0.00032 Score=84.78 Aligned_cols=234 Identities=10% Similarity=-0.030 Sum_probs=126.9
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEEecCCccceeeeeee-cCCCCeeEEEEecCCCceEEEEEc-CCCc
Q 001184 414 RVAWSP-DGNFIGVAFTKH-----------LIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCG-DDKL 479 (1130)
Q Consensus 414 ~v~~sp-dg~~las~~~d~-----------~i~vwd~~~~~~~~~~~~~~-~h~~~V~~i~~s~d~~~l~l~s~s-~d~~ 479 (1130)
++++.| +|+.++.|+.+. .+.+||..+++-.. ...+. .+.....++++..+++ +++.|+ .+..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-~~~~~~~~~~~~~~~~~~~~g~--lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-RTVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-CEEEECSCCCSSCEEEECTTSC--EEEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe-CcccCCCCCCccccccCCCCCC--EEEeCCCCCCc
Confidence 566777 899999987643 58899998876332 22222 2333445678888998 778877 4568
Q ss_pred EEEEe-cCCCeeeEecCCCcCE-EEEeecccCCccEEEEEe-cC-----CcEEEEEccCCcceeeecCCC-ccE----EE
Q 001184 480 IRVWD-LSGRKLFQFEGHEAPV-YSVCPHQKENIHFIFSTA-VD-----GKIKAWLYDNVGSRVDYDAPG-LWC----TT 546 (1130)
Q Consensus 480 v~iwd-~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s-~d-----g~i~vwd~~~~~~~~~~~~~~-~~v----~~ 546 (1130)
+.+|| .+++....-..+..+- .++++ .+++++++.|+ .+ ..+.+||..+..-... .... .+. ..
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~--~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~~~~p~~~~~~~ 343 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADKQ 343 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEE--CTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTSCSGGGCCCCTT
T ss_pred eEEecCcCCceeECCCCCccccccceEE--ecCCeEEEEeCcccCCcccccceEeCCCCCcceeC-CCcccccccccccc
Confidence 99999 5554332211111111 12222 23567888888 34 4688999876442221 0000 000 00
Q ss_pred EEEecCCCeEEEeeecC-----CCCcEEEEeeCCCCceeEEEecccC--------ceeEEEEEcC-CCCEEEEEeCCC--
Q 001184 547 MLYSADGSRLFSCGTSK-----EGDSHLVEWNESEGALKRTYIGFRK--------KSAGVVQFDT-TRNRILAAGEDN-- 610 (1130)
Q Consensus 547 ~~~s~~~~~l~~~~~~~-----~~~~~i~~wd~~~~~~~~~~~~~~~--------~~v~~~~~~~-~~~~l~~~~~dg-- 610 (1130)
..+..++..++.++.++ .....+..||..+............ ..-.++.+.. +++.++.|+.++
T Consensus 344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 11223444445544311 1145688899887764433322111 0123344433 566777777532
Q ss_pred ---------cEEEEeCCCCceeEEEeccCCCCC-cceEEEcCCCCEEEEEeCC
Q 001184 611 ---------QIKFWDMDNVNMLTSTEAEGGLPS-LPRLRFNKEGNLLVVTTAD 653 (1130)
Q Consensus 611 ---------~i~vwd~~~~~~~~~~~~~~~~~~-i~~v~~s~~~~~l~~~~~d 653 (1130)
.|.+||..+............... ..+++..|++++++.|+.+
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 688888887765443301111112 2345667889988888754
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.03 E-value=0.0006 Score=83.58 Aligned_cols=200 Identities=6% Similarity=-0.003 Sum_probs=110.5
Q ss_pred cCCCc-cEEEEEEc-CCCCEEEEEeC-C----CeEEEEEecCC-ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001184 406 KDSSI-SVSRVAWS-PDGNFIGVAFT-K----HLIHLYTYQGS-NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD 477 (1130)
Q Consensus 406 ~~h~~-~V~~v~~s-pdg~~las~~~-d----~~i~vwd~~~~-~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d 477 (1130)
.+|.- .+...+|| |||++||.+.. + .+|+++|+.++ +.+.. .+.. ....++|+|||+. |+....|
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d 241 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKD 241 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEEC
Confidence 34553 68899999 99999987643 2 25999999998 63321 1221 2457899999985 3433333
Q ss_pred -----CcEEEEec-CCCe--eeEec-CCCcCEEEEeecccCCccEEEEEec---CCcEEEEEccCCc-ce--eee-cCCC
Q 001184 478 -----KLIRVWDL-SGRK--LFQFE-GHEAPVYSVCPHQKENIHFIFSTAV---DGKIKAWLYDNVG-SR--VDY-DAPG 541 (1130)
Q Consensus 478 -----~~v~iwd~-~~~~--~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~-~~--~~~-~~~~ 541 (1130)
..|.+++. ++.. ...+. ........+.|+ +|+++|+..+. ...|.++|+.+.. .. ..+ ....
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA--ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC--TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC--CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 35777773 3321 22222 222345566664 56677766553 3457778887652 12 222 2233
Q ss_pred ccEEEEEEecCCCeEEEeeecC-CCCcEEEEeeCCCC-ceeE-EEecccCceeEEEEEcCCCCE-EEEEeCCCc--EEEE
Q 001184 542 LWCTTMLYSADGSRLFSCGTSK-EGDSHLVEWNESEG-ALKR-TYIGFRKKSAGVVQFDTTRNR-ILAAGEDNQ--IKFW 615 (1130)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~--i~vw 615 (1130)
....++.|. +|..|+..+... .+...|+.++..++ .... .+....+..+..+.+ .++. +++...++. |+++
T Consensus 320 ~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 320 GVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEE
T ss_pred CceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEE
Confidence 344444443 366666655321 24568889998753 3222 233222223444444 3444 455666775 5556
Q ss_pred eC
Q 001184 616 DM 617 (1130)
Q Consensus 616 d~ 617 (1130)
++
T Consensus 397 dl 398 (751)
T 2xe4_A 397 MA 398 (751)
T ss_dssp EC
T ss_pred ec
Confidence 65
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=0.001 Score=75.29 Aligned_cols=249 Identities=11% Similarity=0.081 Sum_probs=142.6
Q ss_pred ceeEEEEec-CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeC-CC----cEEEEEeecC
Q 001184 835 VVPCVALSK-NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME-DS----TIQIYNVRVD 907 (1130)
Q Consensus 835 ~i~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~-dg----~v~iwd~~~~ 907 (1130)
....++++| ++..|.++. .+.|+.+|+.++....... .......++|++ ++++|+++.. ++ .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 457899998 455566655 5789999998876554443 456688999999 7775555544 22 23334432 3
Q ss_pred eEE--EEEecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-
Q 001184 908 EVK--TKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN- 983 (1130)
Q Consensus 908 ~~~--~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~- 983 (1130)
... ..+.. .....+++++| +|..+++-..++.|..++.+.+... ....... ......++|+|+|++|++.
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~---~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQD---SGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSS---SSCCEEEEECTTSSEEEEEE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCC---CCcceeEEEcCCCCEEEEEE
Confidence 211 22221 23457789999 6666666667788999998864431 1111111 1346789999999966653
Q ss_pred -cCCcEEEEECCC--cee--eeeeecC---CC----------CCCCeEEEEEC--------CCCCEEEEEeCCCcEEEEe
Q 001184 984 -HETQLAIYDGSK--MEC--IRQWVPQ---DV----------LSSPISSAAYS--------CNSQLIYATFTDGSIGVFD 1037 (1130)
Q Consensus 984 -~d~~i~v~d~~~--~~~--~~~~~~~---~~----------~~~~v~~v~~s--------~dg~~l~t~~~Dg~i~vwd 1037 (1130)
..+.|..++... +.. +..+.+. .+ ...+-..++.. ++|.+.++-...++|+.++
T Consensus 289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 577888877652 222 1222211 00 11122245553 4466666655678899998
Q ss_pred CCCcccccccCCC-----ccccc-CCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1038 ADSLRLRCRIAPS-----AYMSQ-ASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1038 ~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
.+|+........ .+... ....+.-..+..+++.|+++.++++-...+.|+..++.
T Consensus 369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 455543322110 00000 00011123567788888556677776667788887764
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0011 Score=74.87 Aligned_cols=240 Identities=9% Similarity=0.115 Sum_probs=136.8
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCC----cEEEEec
Q 001184 411 SVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK----LIRVWDL 485 (1130)
Q Consensus 411 ~V~~v~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~----~v~iwd~ 485 (1130)
....++++| ++..|.++...+.|+.+|..++.. . .+.........++|+++|+. ++++...++ .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-~---~~~~~~~~P~~ia~d~~G~~-lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-S---TVYSGLSKVRTICWTHEADS-MIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-E---EEECCCSCEEEEEECTTSSE-EEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-E---EEecCCCCcceEEEeCCCCE-EEEEeCCCCcccceEEEEeC
Confidence 467899998 455666665557899999887542 2 23334556889999999984 233333222 3444444
Q ss_pred CCCee--eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcceeeec-CCCccEEEEEEecCCCeEEEeeec
Q 001184 486 SGRKL--FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSADGSRLFSCGTS 562 (1130)
Q Consensus 486 ~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1130)
.+... ..+.. ......+++++. ++.++++-..++.|..++.+......... ........++|+|+|++|+.+..
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~- 289 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV- 289 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET-
T ss_pred CCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC-
Confidence 44332 22221 223455666542 45666666678899999987654422222 22245788999999997666642
Q ss_pred CCCCcEEEEeeCCC--Cce--eEEEecc------c---------CceeEEEEEc--------CCCCEEEEEeCCCcEEEE
Q 001184 563 KEGDSHLVEWNESE--GAL--KRTYIGF------R---------KKSAGVVQFD--------TTRNRILAAGEDNQIKFW 615 (1130)
Q Consensus 563 ~~~~~~i~~wd~~~--~~~--~~~~~~~------~---------~~~v~~~~~~--------~~~~~l~~~~~dg~i~vw 615 (1130)
....|+.++... +.. ...+.+. . ..+...+++. +++..+++=...+.|+.+
T Consensus 290 --~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i 367 (430)
T 3tc9_A 290 --NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRIL 367 (430)
T ss_dssp --TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEE
T ss_pred --CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEE
Confidence 267888877542 222 2233221 0 0011145443 335555555566789988
Q ss_pred eCCCCceeEEEec---------cC------CCCCcceEEEcCC-CCEEEEEeCCCcEEEEEc
Q 001184 616 DMDNVNMLTSTEA---------EG------GLPSLPRLRFNKE-GNLLVVTTADQGIKILAN 661 (1130)
Q Consensus 616 d~~~~~~~~~~~~---------~~------~~~~i~~v~~s~~-~~~l~~~~~dg~i~iw~~ 661 (1130)
+. +|........ .+ .......++++|+ +.++++-..++.|+.++.
T Consensus 368 ~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 368 TP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp CT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 84 5544333321 00 0123578999984 555555455677777765
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.93 E-value=0.019 Score=64.05 Aligned_cols=233 Identities=10% Similarity=-0.025 Sum_probs=141.8
Q ss_pred cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE-eCCCeEEEEEecCCccce-e
Q 001184 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGSNDLC-Q 446 (1130)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~-~~d~~i~vwd~~~~~~~~-~ 446 (1130)
...|+..++....... +......+..++|++.+..|... ...+.|..+++.+..... .
T Consensus 91 ~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~ 150 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 150 (400)
T ss_dssp TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC
T ss_pred cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc
Confidence 4688888887654332 12334578899999976655555 456789999887632100 1
Q ss_pred eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEeecccCCccEEEEEec-CCcEE
Q 001184 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAV-DGKIK 524 (1130)
Q Consensus 447 ~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~ 524 (1130)
...+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ........+++.|.. +.++++-.. .+.|.
T Consensus 151 ~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~ 228 (400)
T 3p5b_L 151 DTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIK 228 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTT-TEEEEEECSSSCCEE
T ss_pred eEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEeccc-CeEEEEeCCCCCEEE
Confidence 1122323456789999985554 5566667789999997776555443 334457888887643 334444322 47888
Q ss_pred EEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc-CceeEEEEEcCCCCEE
Q 001184 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR-KKSAGVVQFDTTRNRI 603 (1130)
Q Consensus 525 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 603 (1130)
..+++...........-.....+++++++..|+.+-. ....|..+|+............. -.....+++. .+..+
T Consensus 229 ~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~ly 304 (400)
T 3p5b_L 229 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVF 304 (400)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEE
T ss_pred EEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEE
Confidence 8888765544444444457899999998888887743 36789999986543333333211 1123345552 23344
Q ss_pred EEEeCCCcEEEEeCCCCceeEEEe
Q 001184 604 LAAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 604 ~~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
++-...+.|..+|..+|+.+..+.
T Consensus 305 wtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 305 WTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEESSSCSEEEEESSSCCCCEEEE
T ss_pred EecCCCCeEEEEEcCCCCceEEEe
Confidence 455566788888877776665554
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.92 E-value=0.0092 Score=64.15 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=141.0
Q ss_pred cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE-EEEeCCCeEEEEEecCCccceee
Q 001184 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQGSNDLCQS 447 (1130)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~d~~i~vwd~~~~~~~~~~ 447 (1130)
...|+..|+.+...... . .. .....+..++|.+.+..| .+-...+.|..++..++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~--~---------------~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT--I---------------VV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCE--E---------------EE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEE--E---------------Ee-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 56899999987541110 0 11 112356789999865554 4445678899999887642111
Q ss_pred eeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEeecccCCccEEEEEe--cCCcEE
Q 001184 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTA--VDGKIK 524 (1130)
Q Consensus 448 ~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s--~dg~i~ 524 (1130)
.+...-.....+++.+.+.. ++++-...+.|.+++.+|.....+. ........+++.+.. ..|+.+. ..+.|.
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIE 148 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEE
Confidence 12222345778999976654 5566667789999997776554443 344567888887543 3444443 357788
Q ss_pred EEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEE
Q 001184 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRIL 604 (1130)
Q Consensus 525 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1130)
..+++...........-.....+++++++..|+.+-. ..+.|..+|..... .+.+..........+++.. +..++
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~-~~~~~~~~~~~P~glav~~-~~lyw 223 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFE-DILYW 223 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEECSCCSCEEEEEEET-TEEEE
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCc-eEEEecCCCCCceEEEEeC-CEEEE
Confidence 8887654433333333446789999998888877643 36789999976433 3333221122344566642 34445
Q ss_pred EEeCCCcEEEEeCCCCceeEEEe
Q 001184 605 AAGEDNQIKFWDMDNVNMLTSTE 627 (1130)
Q Consensus 605 ~~~~dg~i~vwd~~~~~~~~~~~ 627 (1130)
+-...+.|..++..+++....+.
T Consensus 224 td~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 224 TDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred EecCCCeEEEEECCCCCceEEEe
Confidence 55566788888887777655554
No 292
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.90 E-value=0.0027 Score=68.34 Aligned_cols=209 Identities=12% Similarity=0.024 Sum_probs=130.6
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCC-EEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIGV 426 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~las 426 (1130)
..+.+++|++.+..++.+-...+.|..++..++..... +....-.....+++.+.+. +..+
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~~ 96 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYWT 96 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEEE
Confidence 46789999997666777767778999999876632110 1112223466899998555 4455
Q ss_pred EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEE-cCCCcEEEEecCCCeeeEec-CCCcCEEEEe
Q 001184 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-GDDKLIRVWDLSGRKLFQFE-GHEAPVYSVC 504 (1130)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~-s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~ 504 (1130)
-...+.|.++++.+... .. .+.........+++.|.+.. ++++- +..+.|...+.+|.....+. ..-...+.++
T Consensus 97 d~~~~~I~~~~~dG~~~-~~--l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngla 172 (318)
T 3sov_A 97 DSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT 172 (318)
T ss_dssp ETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred ECCCCEEEEEECCCCcE-EE--EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEE
Confidence 55678899999876432 21 12234456789999997664 33333 34578888887776555443 2234567888
Q ss_pred ecccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEe
Q 001184 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1130)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1130)
+++.. +.+.++-+..+.|..+|++.................+++.. ..++..-. +.+.|..++..+|+....+.
T Consensus 173 vd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywtd~---~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 173 LDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDW---STHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEEET---TTTEEEEEETTTCCSCEEEE
T ss_pred EeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEEec---CCCeEEEEECCCCCceEEEe
Confidence 86533 34555556678899999876444443333344566777753 34444332 36788888887777655554
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.88 E-value=0.0021 Score=72.65 Aligned_cols=251 Identities=9% Similarity=0.034 Sum_probs=144.4
Q ss_pred ceeEEEEecC--CCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC---C-cEEEEEeecC
Q 001184 835 VVPCVALSKN--DSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED---S-TIQIYNVRVD 907 (1130)
Q Consensus 835 ~i~~l~~s~d--g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d---g-~v~iwd~~~~ 907 (1130)
....++++|+ +..|..+. .+.|+.+|..++...... ........+++++ ++.++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 44555555 588999999887765443 3455689999999 67754443321 1 1333333222
Q ss_pred eE-EEEEecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--
Q 001184 908 EV-KTKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-- 983 (1130)
Q Consensus 908 ~~-~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-- 983 (1130)
.. ...+. .......+++.| +|.+.++-..++.|+.++..++...... ..... ......++|+|++.+|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~~~~---~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-VMMDT---KGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-EECSC---CSSCEEEEECTTSSEEEEEET
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-eccCC---CCCcccEEEeCCCCEEEEEeC
Confidence 11 11122 223456789999 6666656556788999998865431111 11111 1223469999999966654
Q ss_pred cCCcEEEEECC--Ccee--eeeeecC---CC---------CCCCeEEEEE---------CCCCCEEEEEeCCCcEEEEeC
Q 001184 984 HETQLAIYDGS--KMEC--IRQWVPQ---DV---------LSSPISSAAY---------SCNSQLIYATFTDGSIGVFDA 1038 (1130)
Q Consensus 984 ~d~~i~v~d~~--~~~~--~~~~~~~---~~---------~~~~v~~v~~---------s~dg~~l~t~~~Dg~i~vwd~ 1038 (1130)
..+.|+.++.. ++.. ...+.+. .+ .-.....+++ .++|.+.++-...++|++++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 46788887765 3321 1122111 00 0123567999 777777777667789999985
Q ss_pred CCcccccccCCCc-----cccc-CCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCC
Q 001184 1039 DSLRLRCRIAPSA-----YMSQ-ASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1093 (1130)
Q Consensus 1039 ~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~ 1093 (1130)
+|.......... +... ......-..+..+++.|.++.++++-...++|+..++.
T Consensus 373 -~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 -EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 554432221100 0000 00011223467788886567777777777888888764
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.85 E-value=0.0086 Score=63.52 Aligned_cols=197 Identities=10% Similarity=0.178 Sum_probs=125.7
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeEEEEEeCC---CCc---EEEEEe-C--CCcEEEEEee--cCeEEE
Q 001184 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ---DNN---IIAIGM-E--DSTIQIYNVR--VDEVKT 911 (1130)
Q Consensus 844 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~---~~~---~lasg~-~--dg~v~iwd~~--~~~~~~ 911 (1130)
...+++... .+.+.+||+ +++.+..+.. +.++.+..-|+ +++ ++++.. . +++|.+|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 344544444 688999999 7888888753 66777777761 111 333333 3 5789999884 333 44
Q ss_pred EEec------CC-CCeeEEEE--ccC-CC-eEEEEeCCCcEEEEECCC---CcccceeeEeccCCCCCCCeEEEEEcCCC
Q 001184 912 KLKG------HQ-KHITGLAF--STN-LN-ILVSSGSDAQLIFWNTDT---WEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1130)
Q Consensus 912 ~l~~------h~-~~V~~l~~--s~d-g~-~L~s~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 977 (1130)
.+.. .. ..+..+++ +|. ++ ++++...+|.+..|++.. +.........+..+ ..+..++..+..
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~ 191 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEY 191 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCC
Confidence 4421 11 55677888 775 43 688888899999999843 22222222333222 567888888887
Q ss_pred cEEEEE-cCCcEEEEECC-----CceeeeeeecCCCCCCCeEEEEE--CCCCC-EEEEEe-CCCcEEEEeCC-Ccccccc
Q 001184 978 VRLLVN-HETQLAIYDGS-----KMECIRQWVPQDVLSSPISSAAY--SCNSQ-LIYATF-TDGSIGVFDAD-SLRLRCR 1046 (1130)
Q Consensus 978 ~~l~~~-~d~~i~v~d~~-----~~~~~~~~~~~~~~~~~v~~v~~--s~dg~-~l~t~~-~Dg~i~vwd~~-~~~~~~~ 1046 (1130)
..|+++ .+..|..|+.+ +++.+..+... .....+..|++ .++|+ +|++++ .+.+..|||.. +.+.+..
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g-~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR-HLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSS-SBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCC-ccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 777775 45567777754 34555544221 12346888888 56666 777777 56799999997 6666666
Q ss_pred cC
Q 001184 1047 IA 1048 (1130)
Q Consensus 1047 ~~ 1048 (1130)
+.
T Consensus 271 f~ 272 (355)
T 3amr_A 271 FR 272 (355)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 295
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.82 E-value=0.039 Score=57.18 Aligned_cols=238 Identities=11% Similarity=0.115 Sum_probs=147.3
Q ss_pred EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCC
Q 001184 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~ 431 (1130)
+.-.+|..+ ++|.=. ..++.|+|+++.+.++... ....|..-.|-.+. .|+-.+ +.
T Consensus 71 sAIMnP~~~-ViALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~~-~L~lVT-~t 126 (365)
T 2xzh_A 71 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DN 126 (365)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCEEEEEECSSS-EEEEEE-SS
T ss_pred eeeeCCCcc-EEEEec-CCeEEEechHHhhhhccee--------------------cCCccEEEEecCCC-eEEEEc-CC
Confidence 344588776 666654 5789999999988776321 13478888887654 444443 35
Q ss_pred eEEEEEecCCccceeeeeeecCC----CCeeEEEEecCCCceEEEEEc------CCCcEEEEecCCCeeeEecCCCcCEE
Q 001184 432 LIHLYTYQGSNDLCQSLEIDAHV----GGVNDLAFSYPNKQLCIVTCG------DDKLIRVWDLSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~----~~V~~i~~s~d~~~l~l~s~s------~d~~v~iwd~~~~~~~~~~~h~~~v~ 501 (1130)
.|.-|++.+..... +.+..|. ..|..-..+++.+.+ +++|= -.|.+.+|..+.+.-+.+.||.+.-.
T Consensus 127 aVyHWs~~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 203 (365)
T 2xzh_A 127 AVYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 203 (365)
T ss_dssp EEEEEESSTTCCCE--EEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEE
T ss_pred cEEEEcccCCCCCc--eeeecchhcccceEEEEEECCCCCEE-EEEeEeccCCccceeEEEEeecccccceeeeeeeeeE
Confidence 69999997643322 2344443 356667778888853 33332 24678899988888888999987666
Q ss_pred EEeecccCCcc-EEEEEecC---CcEEEEEccCC---cce-----eee--c--CCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 502 SVCPHQKENIH-FIFSTAVD---GKIKAWLYDNV---GSR-----VDY--D--APGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 502 ~~~~~~~~~~~-~l~s~s~d---g~i~vwd~~~~---~~~-----~~~--~--~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
.+.+...+... ++..+... +.+++-++... ... ..+ . ....-..++..++.-..++..+.
T Consensus 204 ~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK---- 279 (365)
T 2xzh_A 204 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 279 (365)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC----
Confidence 55543332222 33333322 58888888543 111 111 1 12334567788887777777765
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 621 (1130)
-|.|++||++++.++..-+-..+ .+...+-.....-+++....|.|.--.++..+
T Consensus 280 ~G~ihlyDleTgt~i~~nrIS~d-~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 280 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred CcEEEEEEcccCcEEEEeccCCC-ceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 89999999999998876654333 44444444444455555566666555554443
No 296
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.79 E-value=0.0044 Score=69.99 Aligned_cols=239 Identities=8% Similarity=0.094 Sum_probs=136.3
Q ss_pred cEEEEEEcCC--CCEEEEEeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCC---C-cEEEEe
Q 001184 411 SVSRVAWSPD--GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD---K-LIRVWD 484 (1130)
Q Consensus 411 ~V~~v~~spd--g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d---~-~v~iwd 484 (1130)
....++|+|+ +..|..+...+.|+.+|..++... .+.........++|+++|+ ++++.... . .+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~----~~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD----IKTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE----EECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE----EeecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEEE
Confidence 4678999995 444555544488999998776532 2333445689999999999 55554421 1 233344
Q ss_pred cCCCee--eEecCCCcCEEEEeecccCCccEEEEEecCCcEEEEEccCCcc-eeee-cCCCccEEEEEEecCCCeEEEee
Q 001184 485 LSGRKL--FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDY-DAPGLWCTTMLYSADGSRLFSCG 560 (1130)
Q Consensus 485 ~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~s~~~~~l~~~~ 560 (1130)
..+... ..+. .......+++++. ++.+.++-..++.|+.+|..++.. ...+ .........++|+|+|++|+.+-
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 222211 1111 1233445666542 445555656678899888875544 1111 11222345799999999776664
Q ss_pred ecCCCCcEEEEeeCC--CCce--eEEEecc------cC--------ceeEEEEE---------cCCCCEEEEEeCCCcEE
Q 001184 561 TSKEGDSHLVEWNES--EGAL--KRTYIGF------RK--------KSAGVVQF---------DTTRNRILAAGEDNQIK 613 (1130)
Q Consensus 561 ~~~~~~~~i~~wd~~--~~~~--~~~~~~~------~~--------~~v~~~~~---------~~~~~~l~~~~~dg~i~ 613 (1130)
. ....|+.++.. ++.. ...+.+. .+ .....+++ .++++++++-...+.|+
T Consensus 292 ~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 292 N---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp T---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred C---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 2 36789887754 3322 1233221 00 12345788 66666666666678899
Q ss_pred EEeCCCCceeEEEeccCC----------------CCCcceEEEc-CCCCEEEEEeCCCcEEEEEcC
Q 001184 614 FWDMDNVNMLTSTEAEGG----------------LPSLPRLRFN-KEGNLLVVTTADQGIKILANA 662 (1130)
Q Consensus 614 vwd~~~~~~~~~~~~~~~----------------~~~i~~v~~s-~~~~~l~~~~~dg~i~iw~~~ 662 (1130)
.++. +|... ++...+. ......++++ +++.++++-..++.|+.++++
T Consensus 369 ~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 9985 55433 3322111 1234578888 566555555556777777653
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=0.0076 Score=67.94 Aligned_cols=255 Identities=9% Similarity=0.000 Sum_probs=145.1
Q ss_pred ceeEEEEec-CCCEEEEEe--CCeEEEEECCCceeEEEEeCC---CCCeEEEEE-------eCCCCcEEEEEeCCC----
Q 001184 835 VVPCVALSK-NDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP---PPASTFLAF-------HPQDNNIIAIGMEDS---- 897 (1130)
Q Consensus 835 ~i~~l~~s~-dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~-------sp~~~~~lasg~~dg---- 897 (1130)
....|+|+| +...|.++. .+.|++.|+.++......... ......++| ++ ++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 355555554 366999999988777655432 235889999 99 666555555443
Q ss_pred ---cEEEEEeec-CeEE-----EEEecCCCCeeEEEEccCCCe-EEEEeCCCcEEEEECC-------CCcc------c--
Q 001184 898 ---TIQIYNVRV-DEVK-----TKLKGHQKHITGLAFSTNLNI-LVSSGSDAQLIFWNTD-------TWEK------R-- 952 (1130)
Q Consensus 898 ---~v~iwd~~~-~~~~-----~~l~~h~~~V~~l~~s~dg~~-L~s~s~Dg~i~vwd~~-------~~~~------~-- 952 (1130)
.|.+++... +... ..+... .....++++|++.. +++--.++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 256665443 2211 122211 23457889996555 4455567889999998 4433 0
Q ss_pred --ceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEEC--CCceee--eeeecC---CCC---------CCCe
Q 001184 953 --KSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDG--SKMECI--RQWVPQ---DVL---------SSPI 1012 (1130)
Q Consensus 953 --~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~--~~~~~~--~~~~~~---~~~---------~~~v 1012 (1130)
......... ......++|+|+|.+|.++ ..+.|+.++. .++... ..+.+. .+. -...
T Consensus 298 g~~~~l~~~~~---~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 298 NTFKQLFTIAD---PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TTEEEEEECSS---SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred cccceeEecCC---CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 011122211 1345789999999965553 5678888554 333221 122211 100 0123
Q ss_pred E-EEEEC-------CCCCEEEEEeCCCcEEEEeCCCcccccccCCCc------------cccc-CCCCCceeeeEEEEEc
Q 001184 1013 S-SAAYS-------CNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA------------YMSQ-ASPNSQTVFPLVVTSH 1071 (1130)
Q Consensus 1013 ~-~v~~s-------~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~ 1071 (1130)
. .++.. ++|.+.++-....+|+.++ .+|... .+.... +... ....+.-..+..+++.
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 3 45554 4666666666778999999 456432 322110 0000 0001122346778888
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCc
Q 001184 1072 PQEPNQLAVGLTDGSVKVIEPSETE 1096 (1130)
Q Consensus 1072 ~~~~~~l~s~~~Dg~v~vW~~~~~~ 1096 (1130)
+.++.++++=....+|+.+++....
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCc
Confidence 8546666666667889999887655
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.73 E-value=0.01 Score=71.96 Aligned_cols=217 Identities=7% Similarity=-0.035 Sum_probs=130.6
Q ss_pred ccCCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCE
Q 001184 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1130)
Q Consensus 344 ~~h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 423 (1130)
......+.+++|++.+.+|+++-...+.|+.+++........ ...++.........|++.+.++.
T Consensus 420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~---------------~~~vi~~~l~~P~GLAvD~~~~~ 484 (791)
T 3m0c_C 420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDIQAPDGLAVDWIHSN 484 (791)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCCCEEEEETTTTE
T ss_pred ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc---------------eeEEEecCCCCcceeeeeecCCc
Confidence 345567889999997666677766778899998875321100 00023323445678999987765
Q ss_pred EEE-EeCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecC-CCcCEE
Q 001184 424 IGV-AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG-HEAPVY 501 (1130)
Q Consensus 424 las-~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~-h~~~v~ 501 (1130)
|.. -...+.|.+.++.+.. ... .+.........|++.|.+..+++.-.+..+.|...+..|.....+.. .-....
T Consensus 485 LY~tD~~~~~I~v~~ldG~~-~~~--l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~ 561 (791)
T 3m0c_C 485 IYWTDSVLGTVSVADTKGVK-RKT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 561 (791)
T ss_dssp EEEEETTTTEEEEEETTSSS-EEE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred EEEEecCCCeEEEEeCCCCe-EEE--EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCce
Confidence 554 4567889999987643 221 12334456889999998764332222334778888888877666543 335678
Q ss_pred EEeecccCCccEEEEEecCCcEEEEEccCCcceeeecCCC--ccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCce
Q 001184 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG--LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1130)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1130)
.|++.+.. +.+.++-...+.|...+++............ ....+|++. +.+|+.+-. ..+.|...|..+|+.
T Consensus 562 GLavD~~~-~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~---~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 562 GITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDI---INEAIFSANRLTGSD 635 (791)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEET---TTTEEEEEETTTCCC
T ss_pred EEEEecCC-CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEEC---CCCEEEEEeCCCCcc
Confidence 88886543 3444454556788888887655544443321 234456553 445555532 257787777777766
Q ss_pred eEEEe
Q 001184 580 KRTYI 584 (1130)
Q Consensus 580 ~~~~~ 584 (1130)
+..+.
T Consensus 636 ~~~l~ 640 (791)
T 3m0c_C 636 VNLLA 640 (791)
T ss_dssp CEEEE
T ss_pred eEEee
Confidence 65554
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.68 E-value=0.038 Score=66.91 Aligned_cols=231 Identities=10% Similarity=-0.005 Sum_probs=139.3
Q ss_pred cCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEE-EEEeCCCeEEEEEecCCccc-ee
Q 001184 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQGSNDL-CQ 446 (1130)
Q Consensus 369 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-as~~~d~~i~vwd~~~~~~~-~~ 446 (1130)
...|+..++...+... +......+..++|++.+..| .+-...+.|+.+++...... ..
T Consensus 403 ~~~Ir~i~l~~~~~~~--------------------l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~ 462 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 462 (791)
T ss_dssp BSSEEEECTTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred ccceeEeeccCCccee--------------------eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce
Confidence 4567877776554321 22234567899999965554 44455678999988753210 11
Q ss_pred eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecC-CcEE
Q 001184 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVD-GKIK 524 (1130)
Q Consensus 447 ~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~ 524 (1130)
...+.........|++.+.++. ++++-...+.|.+.+.+|.....+. ........|++.+.. +.++++-... +.|.
T Consensus 463 ~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~ 540 (791)
T 3m0c_C 463 DTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIK 540 (791)
T ss_dssp EEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEE
T ss_pred eEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEE
Confidence 1123334456788999988865 5666677889999997777665554 334567889887643 2344443233 6788
Q ss_pred EEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEecccC-ceeEEEEEcCCCCEE
Q 001184 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK-KSAGVVQFDTTRNRI 603 (1130)
Q Consensus 525 vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l 603 (1130)
..+++.......+...-.....|++++.+..|+.+-. +...|...++........+..... .....+++. +.+|
T Consensus 541 ~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~---~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~l 615 (791)
T 3m0c_C 541 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKV 615 (791)
T ss_dssp EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEE
T ss_pred EEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEE
Confidence 8888765554444444457899999988888877742 367899999865444333332111 122344443 3344
Q ss_pred EEE-eCCCcEEEEeCCCCceeEEE
Q 001184 604 LAA-GEDNQIKFWDMDNVNMLTST 626 (1130)
Q Consensus 604 ~~~-~~dg~i~vwd~~~~~~~~~~ 626 (1130)
+.+ ...+.|...|..+|+.+..+
T Consensus 616 YwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 616 FWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEECCCCEEEEEeCCCCcceEEe
Confidence 444 35567777777777655554
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=0.03 Score=63.07 Aligned_cols=248 Identities=13% Similarity=0.104 Sum_probs=137.3
Q ss_pred CEEEEEEec-CCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEE-------cCC
Q 001184 349 SVVSMDFHP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-------SPD 420 (1130)
Q Consensus 349 ~V~~v~fsp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-------spd 420 (1130)
....++|+| ++..|+++....+.|++.|..++....... .-.........++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~----------------~~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLN----------------INTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEEC----------------CTTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEc----------------cCccccCCCcEEEEeecccccCCC
Confidence 578999999 455566666556789999998877653100 00112335899999 999
Q ss_pred CCEEEEEeCCC-------eEEEEEecC-Cccce-e-eeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe-c----
Q 001184 421 GNFIGVAFTKH-------LIHLYTYQG-SNDLC-Q-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L---- 485 (1130)
Q Consensus 421 g~~las~~~d~-------~i~vwd~~~-~~~~~-~-~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd-~---- 485 (1130)
|++|.++...+ .|.+.+... +.... . ...+.. ......+++.|++.. ++++-..++.|..+| .
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99666665543 255665443 22110 0 011211 123467889996654 567777888899999 4
Q ss_pred ---CCCe-----------eeE-ec-CCCcCEEEEeecccCCccE-EEEEecCCcEEEEEccCCcce----eeecCC---C
Q 001184 486 ---SGRK-----------LFQ-FE-GHEAPVYSVCPHQKENIHF-IFSTAVDGKIKAWLYDNVGSR----VDYDAP---G 541 (1130)
Q Consensus 486 ---~~~~-----------~~~-~~-~h~~~v~~~~~~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~----~~~~~~---~ 541 (1130)
++.. ... +. +.......++|++ +++. .++-+..++|+.++.+..... ..+.+. .
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~ 359 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS 359 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence 4443 112 11 2234457888865 4464 455566788988776543211 111110 0
Q ss_pred ------------ccEE-EEEEe-------cCCCeEEEeeecCCCCcEEEEeeCCCCceeEEEeccc--------------
Q 001184 542 ------------LWCT-TMLYS-------ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR-------------- 587 (1130)
Q Consensus 542 ------------~~v~-~~~~s-------~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-------------- 587 (1130)
.... .++.. ++|.++++-.. ...|+.++ .+|. +.++.+..
T Consensus 360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~----N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL----NFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG----GTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC----CCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence 1234 45554 44555544432 67899998 4563 44554321
Q ss_pred Cc---------eeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCce
Q 001184 588 KK---------SAGVVQFDTT-RNRILAAGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 588 ~~---------~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~ 622 (1130)
++ ....++++++ +..+++=..+..|+.++++....
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 11 1345677775 44444444556677776655443
No 301
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.63 E-value=0.086 Score=54.65 Aligned_cols=261 Identities=8% Similarity=0.069 Sum_probs=154.4
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~ 645 (1130)
..+|.+.|+..+.......-. ..+.-++|..+.++.-. ...+.|||+++.+.++...... .|.--.|-.+ +
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~----AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis~-~ 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 118 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CEEEEEECSS-S
T ss_pred CCEEEEEECCCCCCccccccc----cceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC---ccEEEEecCC-C
Confidence 457889999886655333221 22345789888777765 6889999999999999887754 4555555443 3
Q ss_pred EEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccc
Q 001184 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1130)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1130)
.|+..+ +..|+-|++.......+.++.|..-
T Consensus 119 ~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L------------------------------------------------ 149 (365)
T 2xzh_A 119 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 149 (365)
T ss_dssp EEEEEE-SSEEEEEESSTTCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEc-CCcEEEEcccCCCCCceeeecchhc------------------------------------------------
Confidence 455554 4588999986542222222221110
Q ss_pred cCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee-------CCeEEeeecCC
Q 001184 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-------NGVQKLWKWNR 798 (1130)
Q Consensus 726 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~ 798 (1130)
....|.....+++.++++..|- .|.+.+|..+.
T Consensus 150 ----------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 189 (365)
T 2xzh_A 150 ----------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 189 (365)
T ss_dssp ----------------------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred ----------------------------------------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc
Confidence 1234455555666666555443 25566665443
Q ss_pred CCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecC---CCEEEEEe----CCeEEEEECCCc---e---
Q 001184 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN---DSYVMSAG----GGKVSLFNMMNF---K--- 865 (1130)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d---g~~la~~~----dg~i~iwd~~~~---~--- 865 (1130)
... . ..++|......+.+..+ .++++.+. .++++|.++... .
T Consensus 190 ~~s----------------------Q---~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f 244 (365)
T 2xzh_A 190 KVS----------------------Q---PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 244 (365)
T ss_dssp TEE----------------------E---EECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCC
T ss_pred ccc----------------------c---eeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCc
Confidence 211 0 01123222222211111 11333332 267999988432 1
Q ss_pred --eEEEEe----CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC
Q 001184 866 --VMTTFM----SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1130)
Q Consensus 866 --~~~~~~----~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 939 (1130)
....+. ...+-..++..++ .-.++..-+.-|.|++||++++.++..-+--.+.|..-+...+..=++.....|
T Consensus 245 ~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~G 323 (365)
T 2xzh_A 245 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 323 (365)
T ss_dssp CCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTC
T ss_pred ccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCC
Confidence 111111 1234467888888 566888889999999999999999988877777787666665555666667888
Q ss_pred cEEEEECCCCc
Q 001184 940 QLIFWNTDTWE 950 (1130)
Q Consensus 940 ~i~vwd~~~~~ 950 (1130)
.|.--.++...
T Consensus 324 qVl~v~v~~~~ 334 (365)
T 2xzh_A 324 QVLSVCVEEEN 334 (365)
T ss_dssp EEEEEEECTTT
T ss_pred EEEEEEECccc
Confidence 77776666533
No 302
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.62 E-value=3.5e-05 Score=61.86 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHhhhhccHHHHHHHHHHhcCCC
Q 001184 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFF 35 (1130)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1130)
|++.+.||+.||..||+|.||..||.+|++||+|.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999984
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.55 E-value=0.078 Score=57.23 Aligned_cols=239 Identities=11% Similarity=0.116 Sum_probs=149.3
Q ss_pred EEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCC
Q 001184 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~ 431 (1130)
+.-.+|..+ ++|.=. ..++.|+|+++.+.++...+ ...|..-.|-.+. .|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CC
Confidence 445677776 566544 66899999999887763211 2356677776543 455544 45
Q ss_pred eEEEEEecCCccceeeeeeecCC----CCeeEEEEecCCCceEEEEEc------CCCcEEEEecCCCeeeEecCCCcCEE
Q 001184 432 LIHLYTYQGSNDLCQSLEIDAHV----GGVNDLAFSYPNKQLCIVTCG------DDKLIRVWDLSGRKLFQFEGHEAPVY 501 (1130)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~----~~V~~i~~s~d~~~l~l~s~s------~d~~v~iwd~~~~~~~~~~~h~~~v~ 501 (1130)
.|.-|++.+.... .+.+..|. ..|..-..+++.+.+ +++|= -.|.+.+|..+.+.-+.+.||.+.-.
T Consensus 126 aVyHWsi~~~s~P--~kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 126 AVYHWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (494)
T ss_dssp EEEEEESSSSCCC--EEEEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEE
T ss_pred eeEEecccCCCCc--hhheecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeeccccccchheeeeeeeE
Confidence 7999999764332 23344443 356777778888853 33322 24678899988888888999987766
Q ss_pred EEeecccCCcc-EEEEEecC---CcEEEEEccCC---cc-----eeeec----CCCccEEEEEEecCCCeEEEeeecCCC
Q 001184 502 SVCPHQKENIH-FIFSTAVD---GKIKAWLYDNV---GS-----RVDYD----APGLWCTTMLYSADGSRLFSCGTSKEG 565 (1130)
Q Consensus 502 ~~~~~~~~~~~-~l~s~s~d---g~i~vwd~~~~---~~-----~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1130)
.+.+...+... ++..+... +.+++-++... .. ...+. ....-..++..++.-..++..+.
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---- 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence 66554332222 33333332 78899888643 11 11111 12334567888888888877765
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 622 (1130)
-|.|++||++++.++..-+-..+ .+...+......-+++....|.|.--.++....
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred CceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 89999999999999877664333 455555555555566666666666555555443
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.55 E-value=0.011 Score=62.63 Aligned_cols=185 Identities=14% Similarity=0.183 Sum_probs=116.6
Q ss_pred EEEEEcCCCcEEEEecCCCeeeEecCCCcCEEEEeecccC--Ccc---EEEEEe-c--CCcEEEEEccCCc-ceeeecC-
Q 001184 470 CIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKE--NIH---FIFSTA-V--DGKIKAWLYDNVG-SRVDYDA- 539 (1130)
Q Consensus 470 ~l~s~s~d~~v~iwd~~~~~~~~~~~h~~~v~~~~~~~~~--~~~---~l~s~s-~--dg~i~vwd~~~~~-~~~~~~~- 539 (1130)
++++....+-+.+||.+|+.+..+.. +.++.+..-+.- .+. ++++.. . +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 56667777899999999999999864 567776654411 111 233333 3 5789999885222 2322311
Q ss_pred -----CC-ccEEEEEE--ecC-CC-eEEEeeecCCCCcEEEEeeC-------CCCceeEEEecccCceeEEEEEcCCCCE
Q 001184 540 -----PG-LWCTTMLY--SAD-GS-RLFSCGTSKEGDSHLVEWNE-------SEGALKRTYIGFRKKSAGVVQFDTTRNR 602 (1130)
Q Consensus 540 -----~~-~~v~~~~~--s~~-~~-~l~~~~~~~~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1130)
.. ..+..+++ +|. ++ ++++... ++.+..|++ .+.+.++++... ..+..+...+...+
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~EgcvvDd~~g~ 193 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN--SQTEGMAADDEYGR 193 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEEEEETTTTE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC--CCcceEEEcCCCCe
Confidence 11 45666777 674 44 3444432 688888887 234567777653 35777888888899
Q ss_pred EEEEeCCCcEEEEeCC-----CCceeEEEeccCCCCCcceEEE--cCCCC-EEEEEe-CCCcEEEEEcC
Q 001184 603 ILAAGEDNQIKFWDMD-----NVNMLTSTEAEGGLPSLPRLRF--NKEGN-LLVVTT-ADQGIKILANA 662 (1130)
Q Consensus 603 l~~~~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~i~~v~~--s~~~~-~l~~~~-~dg~i~iw~~~ 662 (1130)
|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++++ .+.++.+|+..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999999777777755 2345544432211225677777 45555 555555 67799999985
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.48 E-value=0.00046 Score=83.28 Aligned_cols=207 Identities=9% Similarity=-0.061 Sum_probs=124.6
Q ss_pred CceeEEEEecCCCEEEEEe--CCeEEEEECCC----ceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMN----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
..+..++|++++..|..+. .+.|+.+++.+ ......+.........|++.+.++.++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789998887777765 57899999875 22222222222335668888645666666566788999998765
Q ss_pred eEEEEEecCCCCeeEEEEccCCCeEEEEeC-C-CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--
Q 001184 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGS-D-AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-- 983 (1130)
Q Consensus 908 ~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-- 983 (1130)
.....+.........|++.|++.+|+.+.. . +.|.+.+++..... . +. .. .-.....|+++|++..|+.+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~--l~--~~-~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-S--LV--TE-NIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-E--ES--CS-SCSSCCCEEECTTTCCEEEEET
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-E--EE--eC-CCCCccEEEEeccCCEEEEEec
Confidence 444333333345678999997666665543 2 67777777642211 1 10 00 11345679999987666653
Q ss_pred cCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccC
Q 001184 984 HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 984 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~ 1048 (1130)
..+.|.++++..... ..+...........+|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 560 ~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 560 KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 467899999874332 222221111123345566544 455555567899999998888776664
No 306
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.41 E-value=0.071 Score=58.14 Aligned_cols=233 Identities=15% Similarity=0.096 Sum_probs=118.4
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC---CCE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GNF 423 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~ 423 (1130)
-...+.++|.|||+ ++++ ..+|.|+++|. +++ .. +. ++ . +..........|+|+|| +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d~-~G~-~~---~~--~~-------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLISP-SGK-KL---VA--SF-------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEECS-SCE-EE---EE--EC-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEeC-CCc-eE---ee--cc-------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 35689999999997 4554 55699999973 444 11 00 00 0 11122356889999998 444
Q ss_pred EEEEeC----C----CeEEEEEecCCc-cc---eeee-eee-cCCCCeeEEEEecCCCceEEEEEcC-------------
Q 001184 424 IGVAFT----K----HLIHLYTYQGSN-DL---CQSL-EID-AHVGGVNDLAFSYPNKQLCIVTCGD------------- 476 (1130)
Q Consensus 424 las~~~----d----~~i~vwd~~~~~-~~---~~~~-~~~-~h~~~V~~i~~s~d~~~l~l~s~s~------------- 476 (1130)
|.++.. + ..|..|+...+. .+ +... .+. +.......++|.|||. +.++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 444432 3 567788876541 11 1111 122 1112346799999997 4555332
Q ss_pred CCcEEEEecCCC----------eeeEecCCCcCEEEEeecccCCccEEEEEecCCc-EEEEEccCCc-------------
Q 001184 477 DKLIRVWDLSGR----------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGK-IKAWLYDNVG------------- 532 (1130)
Q Consensus 477 d~~v~iwd~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~-i~vwd~~~~~------------- 532 (1130)
.+.|.-++.+|+ .+. ..+|.. ...++|++. ++.++++-...+. -.+.-+..+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~ 244 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIW-SYGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGR 244 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEE-EECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCC
Confidence 134555555454 111 123433 356777652 3344444322221 1111122111
Q ss_pred -----ceeeecCCCccEEEEEEe-------cCCCeEEEeeecCCCCcEEEEeeCCCC-cee--EEEecccCceeEEEEEc
Q 001184 533 -----SRVDYDAPGLWCTTMLYS-------ADGSRLFSCGTSKEGDSHLVEWNESEG-ALK--RTYIGFRKKSAGVVQFD 597 (1130)
Q Consensus 533 -----~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~~~~~~~~v~~~~~~ 597 (1130)
....+.........++|. .+|+++++... .+.|...++... +.. ..+.......+..+++.
T Consensus 245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~ 320 (354)
T 3a9g_A 245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVID 320 (354)
T ss_dssp TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEEC
T ss_pred CCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccCCCCCeeEEEEC
Confidence 111221223357788884 46655555432 567888777643 222 22221112356778888
Q ss_pred CCCCEEEEE
Q 001184 598 TTRNRILAA 606 (1130)
Q Consensus 598 ~~~~~l~~~ 606 (1130)
|||..+++.
T Consensus 321 pDG~lyv~~ 329 (354)
T 3a9g_A 321 DDGGILIST 329 (354)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 888655554
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.40 E-value=0.018 Score=60.56 Aligned_cols=203 Identities=11% Similarity=0.054 Sum_probs=125.2
Q ss_pred eeEEEEecCCCEEEEEe--CCeEEEEECCCceeEEE-EeC----CCC--CeEEEEE---eCCCCcEEEEEeC--------
Q 001184 836 VPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTT-FMS----PPP--ASTFLAF---HPQDNNIIAIGME-------- 895 (1130)
Q Consensus 836 i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~-~~~----~~~--~i~~l~~---sp~~~~~lasg~~-------- 895 (1130)
..+++|.+....+..++ .++|..||..++..... +.. ... .+..|.+ .| +++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccccc
Confidence 45788988666666666 79999999986644333 221 111 3578999 68 6888876542
Q ss_pred -----CCcEEEEEee---cCeEEEEEe--cCC-----------CCeeEEEEccCCCeEEEEeCC-CcEEEEECCCCcccc
Q 001184 896 -----DSTIQIYNVR---VDEVKTKLK--GHQ-----------KHITGLAFSTNLNILVSSGSD-AQLIFWNTDTWEKRK 953 (1130)
Q Consensus 896 -----dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~dg~~L~s~s~D-g~i~vwd~~~~~~~~ 953 (1130)
+..|..||+. +++.+.... ... .....++..++|+..++.+.- +.|...+.+.. ...
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVS 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEe
Confidence 6779999999 777654433 211 247899999999999988887 77666666543 112
Q ss_pred eeeEeccCCCCCCCeEEEEEcCCCcEEEEE-cCCcEEEEECCCcee--eeeee-cCCCCCCCeEEE-EECCCCCE-EEEE
Q 001184 954 SIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMEC--IRQWV-PQDVLSSPISSA-AYSCNSQL-IYAT 1027 (1130)
Q Consensus 954 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~--~~~~~-~~~~~~~~v~~v-~~s~dg~~-l~t~ 1027 (1130)
......+..........|+++|||..|++. ..+.+..+|+.+... +..-. +..........+ ..-.+|+. |++.
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~ 252 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGA 252 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEc
Confidence 122222222223457799999999988873 488899999884322 11110 110111233443 33347887 5555
Q ss_pred eCCCcEEEEeCCC
Q 001184 1028 FTDGSIGVFDADS 1040 (1130)
Q Consensus 1028 ~~Dg~i~vwd~~~ 1040 (1130)
...+.+.+.+-+.
T Consensus 253 ~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 253 RAPYAISFRSWDN 265 (334)
T ss_dssp ETTEEEEEECSST
T ss_pred CCCCEEEEECCCC
Confidence 5566666665443
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.39 E-value=0.22 Score=53.79 Aligned_cols=261 Identities=8% Similarity=0.063 Sum_probs=158.0
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~ 645 (1130)
..+|.+.|+..+..+..-.-. ..+.-++|..+.++.-. ...+.|||+++.+.++...... .|.--.|-.+ +
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~-~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET-T
T ss_pred CCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC-C
Confidence 458899999887655333221 22355788888777655 6899999999999999888765 3555555433 3
Q ss_pred EEEEEeCCCcEEEEEcCCCchhhhhhcccccccccccccccccccceeeccccccccccccCCCCCCCCcccccCCCccc
Q 001184 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1130)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1130)
.|+..+ +..|+-|++.......+.++.|..-
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 455443 5689999986542222222221110
Q ss_pred cCCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeee-------CCeEEeeecCC
Q 001184 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-------NGVQKLWKWNR 798 (1130)
Q Consensus 726 ~~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~ 798 (1130)
....|.....+++.++++..|- .|.+.+|..+.
T Consensus 149 ----------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 149 ----------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp ----------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred ----------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 1234555556666666664442 25566665443
Q ss_pred CCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCC---CEEEEEe----CCeEEEEECCCc---ee--
Q 001184 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND---SYVMSAG----GGKVSLFNMMNF---KV-- 866 (1130)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg---~~la~~~----dg~i~iwd~~~~---~~-- 866 (1130)
... . ..++|......+.+..+. .+++.+. .++++|.++... ..
T Consensus 189 ~~s----------------------Q---~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 189 KVS----------------------Q---PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp CCE----------------------E---EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred ccc----------------------c---hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 211 0 111343333322221111 2333333 378999998532 10
Q ss_pred -EEEEe------CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCC
Q 001184 867 -MTTFM------SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1130)
Q Consensus 867 -~~~~~------~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 939 (1130)
.+... ...+-..++.+++ .-.++..-+.-|.|++||+.++.++..-+-..+.|..-+...+..=++.....|
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G 322 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 322 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC
T ss_pred cceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc
Confidence 11111 1234467888898 666888889999999999999999988877777787777766666677777888
Q ss_pred cEEEEECCCCc
Q 001184 940 QLIFWNTDTWE 950 (1130)
Q Consensus 940 ~i~vwd~~~~~ 950 (1130)
.|.--.++...
T Consensus 323 qVl~v~v~e~~ 333 (494)
T 1bpo_A 323 QVLSVCVEEEN 333 (494)
T ss_dssp EEEEEEECTTT
T ss_pred eEEEEEEcccc
Confidence 87777766543
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.34 E-value=0.0014 Score=79.03 Aligned_cols=210 Identities=10% Similarity=-0.015 Sum_probs=122.0
Q ss_pred ccEEEEEEcCCCCEEEEE-eCCCeEEEEEecCC---ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEec
Q 001184 410 ISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGS---NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485 (1130)
Q Consensus 410 ~~V~~v~~spdg~~las~-~~d~~i~vwd~~~~---~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~ 485 (1130)
..+..++|++++..|..+ ...+.|+.+++.+. ..... .+.........|++.+.+.. ++++-...+.|.+.+.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEec
Confidence 356689999977766655 34578999998751 11111 11112234567888865554 4555566788999997
Q ss_pred CCCeeeEecC-CCcCEEEEeecccCCccEEEEEecC-CcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecC
Q 001184 486 SGRKLFQFEG-HEAPVYSVCPHQKENIHFIFSTAVD-GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1130)
Q Consensus 486 ~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1130)
.+..+..+.. .......+++.+.. +.++++-... +.|.+++++...........-.....|+++|++..|+.+-.
T Consensus 483 dg~~~~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~-- 559 (699)
T 1n7d_A 483 KGVKRKTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 559 (699)
T ss_dssp SSCCEEEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET--
T ss_pred CCCceEEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec--
Confidence 7766555532 22445667775533 2333333222 67877777644333322223345678999998877776642
Q ss_pred CCCcEEEEeeCCCCceeEEEeccc--CceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec
Q 001184 564 EGDSHLVEWNESEGALKRTYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1130)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 628 (1130)
..+.|..+++.... .+.+.... ......+++..+ ..+++....+.|..++..+++.+..+..
T Consensus 560 -~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 560 -KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp -TTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred -CCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 36789999986433 33332211 112223455433 3444455668899999888877766543
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.31 E-value=0.034 Score=58.41 Aligned_cols=163 Identities=9% Similarity=0.059 Sum_probs=106.9
Q ss_pred EEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeee--cCCCccEEEEEE---cCCCCEE
Q 001184 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV--KDSSISVSRVAW---SPDGNFI 424 (1130)
Q Consensus 350 V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~---spdg~~l 424 (1130)
-.+++|.+.+.+++++.-..++|..||...+..... .+. . +. ......+..|.| .|+++++
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~-----~--------~s~~g~~~~~~sGl~~~~~D~~grL~ 80 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID-----G--------ASSNGDGEQQMSGLSLLTHDNSKRLF 80 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT-----T--------TCCSSCCSEEEEEEEESSSSSCCEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC-----C--------ccccCCCcceeeEEEEeccCCCCcEE
Confidence 346889886665666665789999999986644321 100 0 00 011224689999 6898888
Q ss_pred EEEe-------------CCCeEEEEEec---CCccceeeeeeecC-----------CCCeeEEEEecCCCceEEEEEcCC
Q 001184 425 GVAF-------------TKHLIHLYTYQ---GSNDLCQSLEIDAH-----------VGGVNDLAFSYPNKQLCIVTCGDD 477 (1130)
Q Consensus 425 as~~-------------~d~~i~vwd~~---~~~~~~~~~~~~~h-----------~~~V~~i~~s~d~~~l~l~s~s~d 477 (1130)
++.. .+..|..||+. +++.+... .+... .....+++..++|+ ..++++.-
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~ 157 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALG 157 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEES
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCC
Confidence 7643 26779999999 77654322 22211 12488999999999 77888877
Q ss_pred -CcEEEEecCCCeeeEecC------CCcCEEEEeecccCCccEEEEEecCCcEEEEEccCC
Q 001184 478 -KLIRVWDLSGRKLFQFEG------HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV 531 (1130)
Q Consensus 478 -~~v~iwd~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~~ 531 (1130)
+.|...+..|+.+..+.. .....+.++++| ++..|+.....|.+..+|+...
T Consensus 158 ~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 158 MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 888888877765544321 122356888865 4567777766999999998843
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.30 E-value=0.055 Score=59.08 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=62.3
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC---CCE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GNF 423 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~ 423 (1130)
-...+.++|.|||+ ++++ ..+|.|.+++ +++.... .++ . +..........|+|+|| +..
T Consensus 30 l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~-----~~~-------~--v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTY-----AEL-------S--VYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp CSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEE-----EEC-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEe-----ecc-------e--EeecCCCCceeEEECCCCCCCCE
Confidence 34678999999997 4554 5669999998 4432110 000 0 11223456889999998 555
Q ss_pred EEEEeC-C-----CeEEEEEecCCccc--eeee-eee---cCCCCeeEEEEecCCCceEEEEE
Q 001184 424 IGVAFT-K-----HLIHLYTYQGSNDL--CQSL-EID---AHVGGVNDLAFSYPNKQLCIVTC 474 (1130)
Q Consensus 424 las~~~-d-----~~i~vwd~~~~~~~--~~~~-~~~---~h~~~V~~i~~s~d~~~l~l~s~ 474 (1130)
|.++.. + ..|..|+...+..- +... .+. +.......++|.|||. +.++.
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 544432 2 57888887754211 1111 122 1112346899999996 44543
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.30 E-value=0.055 Score=59.09 Aligned_cols=100 Identities=15% Similarity=0.191 Sum_probs=62.5
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEECCCcee--EEEEe---CCCCCeEEEEEeCC---CCcEEEEEeCC-----CcEEE
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKV--MTTFM---SPPPASTFLAFHPQ---DNNIIAIGMED-----STIQI 901 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~sp~---~~~~lasg~~d-----g~v~i 901 (1130)
....++|.|||+++++-.+|.|++++ +++. +..+. ........++++|+ ++.+.++-..+ +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 46789999999977776689999998 3432 22221 12356889999993 25554444432 67888
Q ss_pred EEeecCe-----E-EEEEe---cCCCCeeEEEEccCCCeEEEEe
Q 001184 902 YNVRVDE-----V-KTKLK---GHQKHITGLAFSTNLNILVSSG 936 (1130)
Q Consensus 902 wd~~~~~-----~-~~~l~---~h~~~V~~l~~s~dg~~L~s~s 936 (1130)
|+...+. . +..+. +.......|+|.|||.+.++.+
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 8876431 1 22233 1111236899999997666644
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.23 E-value=0.1 Score=56.94 Aligned_cols=228 Identities=12% Similarity=0.099 Sum_probs=123.4
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEECCCce-eEEEEe---CCCCCeEEEEEeCC---CCcEEEEEeC---C----CcE
Q 001184 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK-VMTTFM---SPPPASTFLAFHPQ---DNNIIAIGME---D----STI 899 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~sp~---~~~~lasg~~---d----g~v 899 (1130)
.....++|.|||+++++-.+|.|++++. +++ .+..+. ........|+++|+ ++.+.++-.. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3567899999999777766899999974 444 222221 12345889999994 3555544432 3 567
Q ss_pred EEEEeecC-------eEE-EEEec-CCCCeeEEEEccCCCeEEEEeCC-------------CcEEEEECCCCccc-----
Q 001184 900 QIYNVRVD-------EVK-TKLKG-HQKHITGLAFSTNLNILVSSGSD-------------AQLIFWNTDTWEKR----- 952 (1130)
Q Consensus 900 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~dg~~L~s~s~D-------------g~i~vwd~~~~~~~----- 952 (1130)
..|+.... +.+ ..+.. .......|+|.|||.++++.+.. |.|.-.+.+..-..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 77776643 111 22321 11124679999999877765432 33444444321000
Q ss_pred ceeeEeccCCCCCCCeEEEEEcC-CCcEEEEEc--CC--cEEEEECCCce------------------eeeeeecCCCCC
Q 001184 953 KSIAIQLPAGKLPVGETRVQFHS-DQVRLLVNH--ET--QLAIYDGSKME------------------CIRQWVPQDVLS 1009 (1130)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~--d~--~i~v~d~~~~~------------------~~~~~~~~~~~~ 1009 (1130)
...... .+. .....++|+| +|.+.++.. +. .|.+.. .+. .+..+.. ..
T Consensus 188 ~~~i~a--~G~--rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~---~~ 258 (354)
T 3a9g_A 188 NSPIWS--YGH--RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS---ET 258 (354)
T ss_dssp TCCEEE--ECC--SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT---CC
T ss_pred CCcEEE--Ecc--CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC---CC
Confidence 000000 011 2356799999 677666632 21 233322 221 1111101 12
Q ss_pred CCeEEEEEC-------CCCCEEEEEeCCCcEEEEeCCCc-ccc--cccCCCcccccCCCCCceeeeEEEEEcCCCCCEEE
Q 001184 1010 SPISSAAYS-------CNSQLIYATFTDGSIGVFDADSL-RLR--CRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLA 1079 (1130)
Q Consensus 1010 ~~v~~v~~s-------~dg~~l~t~~~Dg~i~vwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1079 (1130)
.....++|. .+|.++++....+.|...++... +.. ..+. . +..-.+..+++.| |+.+++
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-----~-----~~~~rp~~v~~~p-DG~lyv 327 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-----K-----NVFGRLRDVVIDD-DGGILI 327 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-----T-----TTSCCEEEEEECT-TSCEEE
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-----c-----CCCCCeeEEEECC-CCcEEE
Confidence 467788884 57777777667788888888753 221 1111 0 1123456788888 466666
Q ss_pred EEe
Q 001184 1080 VGL 1082 (1130)
Q Consensus 1080 s~~ 1082 (1130)
+..
T Consensus 328 ~~~ 330 (354)
T 3a9g_A 328 STS 330 (354)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.15 E-value=0.037 Score=59.28 Aligned_cols=236 Identities=11% Similarity=0.057 Sum_probs=123.5
Q ss_pred CEEEEEe---CCeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCC----CcEEEEEeecCeEEEEEecCC
Q 001184 846 SYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED----STIQIYNVRVDEVKTKLKGHQ 917 (1130)
Q Consensus 846 ~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~~~~l~~h~ 917 (1130)
.+++.|+ ...+.+||..+.+-...-....... .+++. - ++.+++.|+.+ ..+.+||..+.+-...-....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 3455555 3569999998865433211111111 12222 2 66788888765 568899988765332211111
Q ss_pred CCeeEEEEccCCCeEEEEeCC------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEc-------
Q 001184 918 KHITGLAFSTNLNILVSSGSD------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH------- 984 (1130)
Q Consensus 918 ~~V~~l~~s~dg~~L~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~------- 984 (1130)
......+..-+++.++.|+.+ ..+.+||..+.+-..... .+... ..... +. -++++++.+.
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r--~~~~~-~~-~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS--MLTQR--CSHGM-VE-ANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC--CSSCC--BSCEE-EE-ETTEEEEECCEESCTTT
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC--CcCCc--ceeEE-EE-ECCEEEEECCCCCCCCc
Confidence 111111222367777777765 458899988855322211 11111 11122 22 2555555531
Q ss_pred ---CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccccccCCCcccccC
Q 001184 985 ---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMSQA 1056 (1130)
Q Consensus 985 ---d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~ 1056 (1130)
-..+.+||..+.+-...-..... ...-.++. -++++++.|+.+ ..+.+||..+.+....-.... +.
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r- 238 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEA-RKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW--KG- 238 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC--CB-
T ss_pred ccccceEEEeCCCCCeEEECCCccch-hhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC--Cc-
Confidence 35588999988754433211111 11112222 267788877753 458999998876443211111 11
Q ss_pred CCCCceeeeEEEEEcCCCCCEEEEEeCC-----CcEEEEeCCCCccCCcccccCC
Q 001184 1057 SPNSQTVFPLVVTSHPQEPNQLAVGLTD-----GSVKVIEPSETERKWGVAVPVD 1106 (1130)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D-----g~v~vW~~~~~~~~w~~~~p~~ 1106 (1130)
.++ .. +.. ++.+++.|+.+ ..+.+||+.+.+ |....+.+
T Consensus 239 --~~~---~~-~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~ 282 (306)
T 3ii7_A 239 --VTV---KC-AAV---GSIVYVLAGFQGVGRLGHILEYNTETDK--WVANSKVR 282 (306)
T ss_dssp --SCC---EE-EEE---TTEEEEEECBCSSSBCCEEEEEETTTTE--EEEEEEEE
T ss_pred --cce---eE-EEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEeCCCcc
Confidence 111 11 222 46788888865 457888887765 98766554
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.02 E-value=0.072 Score=56.78 Aligned_cols=232 Identities=15% Similarity=0.156 Sum_probs=120.5
Q ss_pred CCEEEEEe-C----CeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCCC-----cEEEEEeecCeEEEE-
Q 001184 845 DSYVMSAG-G----GKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEVKTK- 912 (1130)
Q Consensus 845 g~~la~~~-d----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~~~~~- 912 (1130)
+.+++.|+ + ..+.+||+.+.+-...-....... .+++. - ++.+++.|+.++ .+.+||..+.+-...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 34455554 2 458899988765433211111111 22222 2 567888887653 588899887653322
Q ss_pred -EecCCCCeeEEEEccCCCeEEEEeCCC-----cEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-c-
Q 001184 913 -LKGHQKHITGLAFSTNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-H- 984 (1130)
Q Consensus 913 -l~~h~~~V~~l~~s~dg~~L~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~- 984 (1130)
+......-..+. -+++.++.|+.++ .+.+||+.+.+-..... .+... ... .++. -++++++.+ .
T Consensus 94 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r--~~~-~~~~-~~~~iyv~GG~~ 165 (302)
T 2xn4_A 94 NMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP--MNTRR--SSV-GVGV-VGGLLYAVGGYD 165 (302)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC--CSSCC--BSC-EEEE-ETTEEEEECCEE
T ss_pred CCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC--CCCcc--cCc-eEEE-ECCEEEEEeCCC
Confidence 221111112222 3677777777653 47788888754322211 11111 111 2222 255555553 1
Q ss_pred ------CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccccccCCCccc
Q 001184 985 ------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYM 1053 (1130)
Q Consensus 985 ------d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~ 1053 (1130)
-..+.+||..+.+-...-..... .....++. -++++++.|+.+ ..+.+||..+.+....-....
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-- 240 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMSTR-RSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM-- 240 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS--
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCccc-cccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC--
Confidence 24588999987654433211111 11122222 267888888754 368999998876543221111
Q ss_pred ccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCCCccCCcccc
Q 001184 1054 SQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAV 1103 (1130)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-----~v~vW~~~~~~~~w~~~~ 1103 (1130)
+. ..+ .+ +.. ++.+++.|+.++ .+.+||+.+.+ |....
T Consensus 241 ~r---~~~---~~-~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 283 (302)
T 2xn4_A 241 CR---RNA---GV-CAV---NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTVVS 283 (302)
T ss_dssp CC---BSC---EE-EEE---TTEEEEECCBCSSSBCCCEEEEETTTTE--EEECS
T ss_pred cc---ccC---eE-EEE---CCEEEEECCcCCCcccccEEEEcCCCCe--EEECC
Confidence 11 112 11 221 467888888764 48899998775 87654
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.02 E-value=0.019 Score=61.45 Aligned_cols=227 Identities=13% Similarity=0.076 Sum_probs=118.1
Q ss_pred CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC-----CcEEEEEeecCe-----EEEEEecCCCCeeEE
Q 001184 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-----STIQIYNVRVDE-----VKTKLKGHQKHITGL 923 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~~-----~~~~l~~h~~~V~~l 923 (1130)
..+.+||..+.+-...-..........+..- ++.+++.|+.+ ..+.+||..+.+ .+..+......-..+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 3589999887654332111111111122223 56788888765 368899987654 222222211111222
Q ss_pred EEccCCCeEEEEeCC-----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-c-----CCcEEEEE
Q 001184 924 AFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-H-----ETQLAIYD 992 (1130)
Q Consensus 924 ~~s~dg~~L~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~-----d~~i~v~d 992 (1130)
. .+++.++.++.+ ..+.+||+.+.+-..... .+... .....+. -++++++.+ . ...+.+||
T Consensus 110 ~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r--~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d 181 (301)
T 2vpj_A 110 T--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD--MQTAR--EGAGLVV--ASGVIYCLGGYDGLNILNSVEKYD 181 (301)
T ss_dssp E--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE--CSSCC--BSCEEEE--ETTEEEEECCBCSSCBCCCEEEEE
T ss_pred E--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCC--CCCCc--ccceEEE--ECCEEEEECCCCCCcccceEEEEe
Confidence 2 266777777654 358889988755433221 22111 1122222 256665553 2 35689999
Q ss_pred CCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccccccCCCcccccCCCCCceeeeEE
Q 001184 993 GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLV 1067 (1130)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1130)
..+.+-...-..... .....++. -++++++.|+.+ ..+.+||..+.+....-.... +. ..+ ..
T Consensus 182 ~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~r---~~~---~~- 249 (301)
T 2vpj_A 182 PHTGHWTNVTPMATK-RSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT--PR---CYV---GA- 249 (301)
T ss_dssp TTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS--CC---BSC---EE-
T ss_pred CCCCcEEeCCCCCcc-cccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC--cc---cce---eE-
Confidence 987665433211111 11122222 367788888764 468999998876543221111 11 112 11
Q ss_pred EEEcCCCCCEEEEEeCCC-----cEEEEeCCCCccCCcccccCC
Q 001184 1068 VTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAVPVD 1106 (1130)
Q Consensus 1068 ~~~~~~~~~~l~s~~~Dg-----~v~vW~~~~~~~~w~~~~p~~ 1106 (1130)
+.. ++.+++.|+.++ .|.+||+.+.+ |....+.+
T Consensus 250 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~~ 288 (301)
T 2vpj_A 250 TVL---RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEVVTSMG 288 (301)
T ss_dssp EEE---TTEEEEECCBCSSSBEEEEEEEETTTTE--EEEEEEEE
T ss_pred EEE---CCEEEEEcCcCCCcccccEEEEcCCCCe--EEEcCCCC
Confidence 222 467888888763 57788887755 87655443
No 317
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.95 E-value=0.039 Score=59.68 Aligned_cols=150 Identities=10% Similarity=0.124 Sum_probs=104.4
Q ss_pred EEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCC----CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCe-----
Q 001184 838 CVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSP----PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE----- 908 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~----- 908 (1130)
......+|..++.+.++.||.-++......+.+... ...|..+..+| +|.+||..+. ..|.|-.+..+.
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~-~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFND-NEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECS-SEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecC-CeEEEEEecCccccCcc
Confidence 345677899999999999999998855556666644 33688999999 8999998854 579998887321
Q ss_pred -------EEEEEec------CCCCeeEEEEccC---CCeEEEEeCCCcEEEEECCCCcccceeeEeccC-----CCCCCC
Q 001184 909 -------VKTKLKG------HQKHITGLAFSTN---LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA-----GKLPVG 967 (1130)
Q Consensus 909 -------~~~~l~~------h~~~V~~l~~s~d---g~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~ 967 (1130)
....+.- ...+|..+.|+|- +..|++-..|+.|++||+........ .+.... ......
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVND 181 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccce
Confidence 1122321 3577999999996 46899999999999999997432222 111111 111167
Q ss_pred eEEEEEcCCCcEEEE-E--cCCcEEE
Q 001184 968 ETRVQFHSDQVRLLV-N--HETQLAI 990 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~-~--~d~~i~v 990 (1130)
+.+++|.+++-.|.+ + ..|.|+-
T Consensus 182 v~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 182 ITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 889999998876665 3 4455553
No 318
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.76 E-value=0.5 Score=51.40 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=59.1
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC---CCEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GNFI 424 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~l 424 (1130)
...+.++|.|+|+++++ +...|.|++++.. +.... .+. ++ . .+..........++|+|| +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~~--~~-------~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PLS--GV-------P-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CCB--SC-------C-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Eec--CC-------c-ccccCCCCCceeEEECCCCCCCCEE
Confidence 46789999999984344 4567999999854 33211 000 00 0 012223456789999996 4444
Q ss_pred EEE-eC-------CCeEEEEEecCCc-cceeee----eee---cCCCCeeEEEEecCCCceEEEEE
Q 001184 425 GVA-FT-------KHLIHLYTYQGSN-DLCQSL----EID---AHVGGVNDLAFSYPNKQLCIVTC 474 (1130)
Q Consensus 425 as~-~~-------d~~i~vwd~~~~~-~~~~~~----~~~---~h~~~V~~i~~s~d~~~l~l~s~ 474 (1130)
..+ +. ...|..|++..+. .+.... .+. .....-..++|.|||. +.++.
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 147 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY--LFIAL 147 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE--EEEEE
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc--EEEEE
Confidence 443 22 2356667765431 111111 111 1111246799999996 44443
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.72 E-value=0.3 Score=53.13 Aligned_cols=242 Identities=10% Similarity=0.069 Sum_probs=123.9
Q ss_pred ceeEEEEecCCC-EEEEEeCCeEEEEECCCceeEEEEe-------CCCCCeEEEEEeCC---CCcEEEEEeC-------C
Q 001184 835 VVPCVALSKNDS-YVMSAGGGKVSLFNMMNFKVMTTFM-------SPPPASTFLAFHPQ---DNNIIAIGME-------D 896 (1130)
Q Consensus 835 ~i~~l~~s~dg~-~la~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~l~~sp~---~~~~lasg~~-------d 896 (1130)
....|+|.|||+ ++++-..|.|++++... .....+. ........++++|+ ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999999 77665689999998643 2211111 12345689999994 3554444332 2
Q ss_pred CcEEEEEeecC--e--EEEE-Eec------CCCCeeEEEEccCCCeEEEEeCC-------------CcEEEEECCCCccc
Q 001184 897 STIQIYNVRVD--E--VKTK-LKG------HQKHITGLAFSTNLNILVSSGSD-------------AQLIFWNTDTWEKR 952 (1130)
Q Consensus 897 g~v~iwd~~~~--~--~~~~-l~~------h~~~V~~l~~s~dg~~L~s~s~D-------------g~i~vwd~~~~~~~ 952 (1130)
..|..|++..+ . .... +.. ....-..|+|.|||.+.++.+.. |.|.-.+.+..-..
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666666432 1 1111 111 01113579999999666665432 34555555431000
Q ss_pred ----------ceeeEeccCCCCCCCeEEEEEcC-CCcEEEEEc--CCcEEEEECCCceeee-------------------
Q 001184 953 ----------KSIAIQLPAGKLPVGETRVQFHS-DQVRLLVNH--ETQLAIYDGSKMECIR------------------- 1000 (1130)
Q Consensus 953 ----------~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~--d~~i~v~d~~~~~~~~------------------- 1000 (1130)
...... .+. .....++|+| +|.+.++.. ++.=.|.-+..+.-..
T Consensus 178 ~npf~~~~~~~~~i~a--~G~--rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS--YGI--RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp TCTTTTSTTSCTTEEE--ECC--SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCcCCCCCCccEEE--EcC--cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 000000 011 3467899999 676666532 2222232222221100
Q ss_pred -----eeecC---CCCCCCeEEEEECC-------CCCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeee
Q 001184 1001 -----QWVPQ---DVLSSPISSAAYSC-------NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFP 1065 (1130)
Q Consensus 1001 -----~~~~~---~~~~~~v~~v~~s~-------dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1130)
.+... -.+......++|.. +|.++++....+.|...+++.++...... +.. .....+
T Consensus 254 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-----~~~~rp 325 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-----DRGQRI 325 (353)
T ss_dssp BSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-----GGCCCE
T ss_pred CCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-----CCCCce
Confidence 00000 00123567778863 57777776677888888877654322111 110 111246
Q ss_pred EEEEEcCCCCCEEEEEe-CCCcEEEEeC
Q 001184 1066 LVVTSHPQEPNQLAVGL-TDGSVKVIEP 1092 (1130)
Q Consensus 1066 ~~~~~~~~~~~~l~s~~-~Dg~v~vW~~ 1092 (1130)
..+++.| |+.++++.. .+| +||++
T Consensus 326 ~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 326 RDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp EEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred eEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 6788888 466666544 344 45665
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.72 E-value=0.11 Score=55.39 Aligned_cols=188 Identities=11% Similarity=0.039 Sum_probs=99.1
Q ss_pred cCCCEEEEEe-C-----CeEEEEECCCce---eEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCCC-----cEEEEEeecC
Q 001184 843 KNDSYVMSAG-G-----GKVSLFNMMNFK---VMTTFMSPPPAS-TFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVD 907 (1130)
Q Consensus 843 ~dg~~la~~~-d-----g~i~iwd~~~~~---~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~ 907 (1130)
.++++++.|+ + ..+.+||..+.+ -...-....... .+++. - ++++++.|+.++ .+.+||..+.
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-L-GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-E-CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 4667777765 3 359999988765 322211111111 22222 2 567888887543 5888998776
Q ss_pred eEE--EEEecCCCCeeEEEEccCCCeEEEEeCC-----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 908 EVK--TKLKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 908 ~~~--~~l~~h~~~V~~l~~s~dg~~L~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
+-. ..+......-.+ ..-+++.++.|+.+ ..+.+||+.+.+-..... .+... .....+. -++.++
T Consensus 139 ~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r--~~~~~~~--~~~~i~ 210 (301)
T 2vpj_A 139 QWSMLGDMQTAREGAGL--VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP--MATKR--SGAGVAL--LNDHIY 210 (301)
T ss_dssp EEEEEEECSSCCBSCEE--EEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC--CSSCC--BSCEEEE--ETTEEE
T ss_pred eEEECCCCCCCcccceE--EEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC--CCccc--ccceEEE--ECCEEE
Confidence 432 222211111122 22367777777754 458899988754332211 11111 1112222 255555
Q ss_pred EEE-c-----CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCccc
Q 001184 981 LVN-H-----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRL 1043 (1130)
Q Consensus 981 ~~~-~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~ 1043 (1130)
+.+ . ...+.+||+.+.+-...-..... .....++. -++++++.|+.+ ..+.+||..+.+.
T Consensus 211 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 211 VVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP-RCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp EECCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred EEeCCCCCcccceEEEEeCCCCcEEECCCCCCc-ccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 553 2 35699999987765433221111 11222222 377888888765 3578889887654
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.67 E-value=0.095 Score=56.05 Aligned_cols=239 Identities=14% Similarity=0.116 Sum_probs=124.1
Q ss_pred ecCCCEEEEEe-C----CeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeC----C-----CcEEEEEeec
Q 001184 842 SKNDSYVMSAG-G----GKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGME----D-----STIQIYNVRV 906 (1130)
Q Consensus 842 s~dg~~la~~~-d----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~----d-----g~v~iwd~~~ 906 (1130)
.-++.+++.|+ + ..+.+||..+.+-...-....... .+++. - ++.+++.|+. + ..+.+||..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 34566666665 2 458999998765443211111111 12222 2 5677777776 2 3588889877
Q ss_pred CeEEEE--EecCCCCeeEEEEccCCCeEEEEeCC-----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcE
Q 001184 907 DEVKTK--LKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVR 979 (1130)
Q Consensus 907 ~~~~~~--l~~h~~~V~~l~~s~dg~~L~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 979 (1130)
.+-... +......-..+.+ +++.++.|+.+ ..+.+||+.+.+-..... .+... .....+.+ ++.+
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~~~~~~--~~~i 171 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP--MLTRR--IGVGVAVL--NRLL 171 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC--CSSCC--BSCEEEEE--TTEE
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC--CCccc--cceEEEEE--CCEE
Confidence 653222 1111111122222 66677776643 358889988754322211 11111 11222222 5555
Q ss_pred EEEE-c-----CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccccccC
Q 001184 980 LLVN-H-----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 980 l~~~-~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~ 1048 (1130)
++.+ . ...+.+||+.+.+-...-..... ...-.++.+ ++++++.|+.+ ..+.+||+.+.+....-.
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 5553 2 25689999987654332111110 112222332 77888888754 569999998876543221
Q ss_pred CCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCC-----cEEEEeCCCCccCCcccccCCC
Q 001184 1049 PSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAVPVDN 1107 (1130)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-----~v~vW~~~~~~~~w~~~~p~~~ 1107 (1130)
... +. ..+ .+.+. ++.+++.|+.++ .+.+||+.+.+ |....+.+.
T Consensus 249 ~p~--~r---~~~---~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~ 298 (308)
T 1zgk_A 249 MKH--RR---SAL---GITVH----QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSEVTRMTS 298 (308)
T ss_dssp CSS--CC---BSC---EEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSS
T ss_pred CCC--Cc---cce---EEEEE----CCEEEEEcCcCCCcccceEEEEcCCCCE--EeecCCCCC
Confidence 110 11 111 11121 467888888643 47788887765 977655543
No 322
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.64 E-value=0.54 Score=50.61 Aligned_cols=194 Identities=11% Similarity=0.136 Sum_probs=114.5
Q ss_pred CceeEEEEecCCCEEEEE-------------eCCeEEEEECCC--ceeE-EEEeC-----CCCCeEEEEEeCC-CC--cE
Q 001184 834 DVVPCVALSKNDSYVMSA-------------GGGKVSLFNMMN--FKVM-TTFMS-----PPPASTFLAFHPQ-DN--NI 889 (1130)
Q Consensus 834 ~~i~~l~~s~dg~~la~~-------------~dg~i~iwd~~~--~~~~-~~~~~-----~~~~i~~l~~sp~-~~--~~ 889 (1130)
.....+++.++|..++++ .+|.|.++|..+ .+.. ..+.+ ..-....+.+.++ ++ .+
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345567788888777775 378999999873 2221 12222 1235677777662 23 34
Q ss_pred EEEEeC--CCcEEEEEeecC----eEEEEEecCC-CCeeEEEEccCCCeEEEEeC---C------------CcEEEEECC
Q 001184 890 IAIGME--DSTIQIYNVRVD----EVKTKLKGHQ-KHITGLAFSTNLNILVSSGS---D------------AQLIFWNTD 947 (1130)
Q Consensus 890 lasg~~--dg~v~iwd~~~~----~~~~~l~~h~-~~V~~l~~s~dg~~L~s~s~---D------------g~i~vwd~~ 947 (1130)
+++-.. +.+|.+|++..+ ..+..+.+.. ...+.+++.++|.+.++... | ..=.+|.++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 567889888753 2233444322 34789999999998887651 1 122344433
Q ss_pred CCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEECCC-cee--eeeeecCCCCCCCeEEEEECC-CC
Q 001184 948 TWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSK-MEC--IRQWVPQDVLSSPISSAAYSC-NS 1021 (1130)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~-~~~--~~~~~~~~~~~~~v~~v~~s~-dg 1021 (1130)
.++.. ...... .....++||||++.|+++ ..+.|..|++.. ++. .+.+ .. ......+++.+ +|
T Consensus 210 ~~~~~-~~~~~l------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi~vD~e~G 278 (355)
T 3sre_A 210 PNDVR-VVAEGF------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNISVDPVTG 278 (355)
T ss_dssp TTCCE-EEEEEE------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEEEECTTTC
T ss_pred CCeEE-EeecCC------cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC---CCCCceEEEeCCCC
Confidence 33211 111111 345789999999988874 478899999863 332 2223 11 35678899999 59
Q ss_pred CEEEEEeCC-CcEEEEeC
Q 001184 1022 QLIYATFTD-GSIGVFDA 1038 (1130)
Q Consensus 1022 ~~l~t~~~D-g~i~vwd~ 1038 (1130)
.+.+++..+ +.|..|+-
T Consensus 279 ~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp CEEEEEESCHHHHHSCCT
T ss_pred cEEEEecCCceEEEEECC
Confidence 987766544 34444443
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.52 E-value=0.23 Score=52.86 Aligned_cols=192 Identities=14% Similarity=0.112 Sum_probs=101.1
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCC------CcEEEEEeecCeEEE
Q 001184 843 KNDSYVMSAG-G----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED------STIQIYNVRVDEVKT 911 (1130)
Q Consensus 843 ~dg~~la~~~-d----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~~~ 911 (1130)
-++++++.|+ + ..+.+||..+.+-...-..........+..- ++++++.|+.+ ..+.+||..+.+-..
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 3667777765 3 5689999988754433222222221122222 66788888765 458899988765332
Q ss_pred EEecCCCCeeEEEEccCCCeEEEEeC---------CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 912 KLKGHQKHITGLAFSTNLNILVSSGS---------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 912 ~l~~h~~~V~~l~~s~dg~~L~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
.-..........+..-+++.++.++. -..+.+||+.+.+-..... .+... .... ++.. ++++++.
T Consensus 133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~~-~~~~-~~~i~v~ 206 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP--MIEAR--KNHG-LVFV-KDKIFAV 206 (306)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC--CSSCC--BSCE-EEEE-TTEEEEE
T ss_pred CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC--ccchh--hcce-EEEE-CCEEEEE
Confidence 21111111111112236666666654 3448899998854322211 11111 1112 2222 5555555
Q ss_pred E-c-----CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccc
Q 001184 983 N-H-----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLR 1044 (1130)
Q Consensus 983 ~-~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~ 1044 (1130)
+ . -..+.+||+.+.+-...-.... ......++.+ ++++++.|+.+ ..+.+||..+.+..
T Consensus 207 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 207 GGQNGLGGLDNVEYYDIKLNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp CCEETTEEBCCEEEEETTTTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred eCCCCCCCCceEEEeeCCCCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 3 2 2568999998765433211111 1122233333 77888888854 46899999887644
No 324
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.49 E-value=1.2 Score=47.71 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=65.4
Q ss_pred CCCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC---CC
Q 001184 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GN 422 (1130)
Q Consensus 346 h~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~ 422 (1130)
.-...+.++|.|||+ ++++--..|.|++++..+++......+ ..+..........|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence 345789999999997 566654489999998766553210000 0022334567899999996 34
Q ss_pred EEEEE-e--CCCeEEEEEecCCc----c---ceeee-eee-cCCCCeeEEEEecCCCceEEEEEc
Q 001184 423 FIGVA-F--TKHLIHLYTYQGSN----D---LCQSL-EID-AHVGGVNDLAFSYPNKQLCIVTCG 475 (1130)
Q Consensus 423 ~las~-~--~d~~i~vwd~~~~~----~---~~~~~-~~~-~h~~~V~~i~~s~d~~~l~l~s~s 475 (1130)
+|... + .+..|.-|.+..+. . .+... .+. +....-..|+|.|||. +.++.+
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 44332 2 34556666665421 1 11111 121 1112356799999997 555543
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.49 E-value=0.28 Score=52.54 Aligned_cols=228 Identities=15% Similarity=0.124 Sum_probs=116.6
Q ss_pred CCeEEEEECCCceeEE-EEeCCCCCeEEEEEeCCCCcEEEEEeC-----C------CcEEEEEeecCeEEEE--EecCCC
Q 001184 853 GGKVSLFNMMNFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGME-----D------STIQIYNVRVDEVKTK--LKGHQK 918 (1130)
Q Consensus 853 dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~~~~~lasg~~-----d------g~v~iwd~~~~~~~~~--l~~h~~ 918 (1130)
...+.+||..+.+-.. .+..+.......+... ++.+++.|+. . ..+.+||..+.+-... +.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3679999998877543 1222223334444444 6778888874 1 1277888877653221 111111
Q ss_pred CeeEEEEccCCCeEEEEeCC--------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-c-----
Q 001184 919 HITGLAFSTNLNILVSSGSD--------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-H----- 984 (1130)
Q Consensus 919 ~V~~l~~s~dg~~L~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~----- 984 (1130)
.- +++. -+++.++.|+.+ ..+.+||..+.+-..... .+.. ..-.+++. -++++++.+ .
T Consensus 91 ~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~---r~~~~~~~-~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 91 LF-GLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--LPYV---VYGHTVLS-HMDLVYVIGGKGSDRK 162 (315)
T ss_dssp SC-EEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--CSSC---CBSCEEEE-ETTEEEEECCBCTTSC
T ss_pred ce-eEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--CCCc---ccceeEEE-ECCEEEEEeCCCCCCc
Confidence 11 1222 256666666632 358899988754322211 1111 11112222 455555553 3
Q ss_pred -CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEeCCCcccccccCCCcccccCCC
Q 001184 985 -ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG-----SIGVFDADSLRLRCRIAPSAYMSQASP 1058 (1130)
Q Consensus 985 -d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1058 (1130)
-..+.+||..+.+-...-..... ...-.++. -++++++.|+.++ .+.+||..+.+....-.... +.
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r--- 234 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTA-RSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ--ER--- 234 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSC-CBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS--CC---
T ss_pred ccceEEEEeCCCCeEEECCCCCCc-hhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC--cc---
Confidence 24689999987654332211110 11112222 2778888888654 58899998876543321110 11
Q ss_pred CCceeeeEEEEEcCCCCCEEEEEeCCC--------------cEEEEeCCCCccCCcccccCC
Q 001184 1059 NSQTVFPLVVTSHPQEPNQLAVGLTDG--------------SVKVIEPSETERKWGVAVPVD 1106 (1130)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg--------------~v~vW~~~~~~~~w~~~~p~~ 1106 (1130)
..| .+ +.. ++.+++.|+.++ .+.+||+.+.+ |....|.+
T Consensus 235 ~~~---~~-~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~ 287 (315)
T 4asc_A 235 SSL---SL-VSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEGVLREI 287 (315)
T ss_dssp BSC---EE-EEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEEEESCS
T ss_pred cce---eE-EEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhhhccCC
Confidence 111 11 222 467888888743 36677776665 97764443
No 326
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.42 E-value=1.3 Score=47.48 Aligned_cols=199 Identities=14% Similarity=0.087 Sum_probs=110.2
Q ss_pred EEEEEEcCCCCEEEEEe------------CCCeEEEEEecCCccceeeeeeec-----CCCCeeEEEEec--CCCceEEE
Q 001184 412 VSRVAWSPDGNFIGVAF------------TKHLIHLYTYQGSNDLCQSLEIDA-----HVGGVNDLAFSY--PNKQLCIV 472 (1130)
Q Consensus 412 V~~v~~spdg~~las~~------------~d~~i~vwd~~~~~~~~~~~~~~~-----h~~~V~~i~~s~--d~~~l~l~ 472 (1130)
.-.++..|+|..+++++ .+|.|.++|.++.........+.+ .......+.+.+ ++...+++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34566788886666552 689999999874321111223333 234677888776 45432334
Q ss_pred EEcC--CCcEEEEe--cCCCee---eEecCC-CcCEEEEeecccCCccEEEEEec---C------------CcEEEEEcc
Q 001184 473 TCGD--DKLIRVWD--LSGRKL---FQFEGH-EAPVYSVCPHQKENIHFIFSTAV---D------------GKIKAWLYD 529 (1130)
Q Consensus 473 s~s~--d~~v~iwd--~~~~~~---~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~---d------------g~i~vwd~~ 529 (1130)
+-.. +.+|.+|+ ..+... ..+.+. -...+.+.+.+ +|.+.++... | ..=.+|.++
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 4333 56888888 333332 333332 23567777754 4455555431 1 122334333
Q ss_pred CCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC-Cce--eEEEecccCceeEEEEEcC-CCCEEEE
Q 001184 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GAL--KRTYIGFRKKSAGVVQFDT-TRNRILA 605 (1130)
Q Consensus 530 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~ 605 (1130)
..+.. .+...-...+.++|+||++.++++.+ ..+.|+.|++.. +.. .+.+. .......+++.+ +|++.++
T Consensus 210 ~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 210 PNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp TTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEEEE
T ss_pred CCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEEEE
Confidence 33222 22222234789999999999888754 267899999853 332 22332 233566788998 5887776
Q ss_pred EeCC-CcEEEEeCC
Q 001184 606 AGED-NQIKFWDMD 618 (1130)
Q Consensus 606 ~~~d-g~i~vwd~~ 618 (1130)
+..+ +.|..|+..
T Consensus 284 ~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 284 CHPNGMRIFFYDAE 297 (355)
T ss_dssp EESCHHHHHSCCTT
T ss_pred ecCCceEEEEECCC
Confidence 6533 344444443
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.32 E-value=1.5 Score=46.93 Aligned_cols=201 Identities=11% Similarity=0.068 Sum_probs=107.9
Q ss_pred CCceeEEEEecCCCEEEEEe-CCeEEEEECCCceeEEE--Ee----CCCCCeEEEEEeCC---CCcEEEEEe--CCCcEE
Q 001184 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTT--FM----SPPPASTFLAFHPQ---DNNIIAIGM--EDSTIQ 900 (1130)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~--~~----~~~~~i~~l~~sp~---~~~~lasg~--~dg~v~ 900 (1130)
-...+.|+|.|||+++++-. .|.|++++..+++.... +. ........|+++|+ ++.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34568999999999888887 79999998766554221 21 22455789999993 344444322 344565
Q ss_pred EEEeecC----------eEE-EEEe---cCCCCeeEEEEccCCCeEEEEeC-------------CCcEEEEECCCCcccc
Q 001184 901 IYNVRVD----------EVK-TKLK---GHQKHITGLAFSTNLNILVSSGS-------------DAQLIFWNTDTWEKRK 953 (1130)
Q Consensus 901 iwd~~~~----------~~~-~~l~---~h~~~V~~l~~s~dg~~L~s~s~-------------Dg~i~vwd~~~~~~~~ 953 (1130)
-|.+..+ +.+ ..+. .|. -..|+|.|||.+.++.+. .|.|.-.+.+..-...
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 5655441 222 2232 232 457999999988777653 2333333433210000
Q ss_pred ee---eEeccCCCCCCCeEEEEEcCCCcEEEEE--cCCcEEEEECCCceee------------------eeeecCCCCCC
Q 001184 954 SI---AIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKMECI------------------RQWVPQDVLSS 1010 (1130)
Q Consensus 954 ~~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~~~------------------~~~~~~~~~~~ 1010 (1130)
.. ......++ .....++|+|+|.+.++- .++.=.|.-+..|.-. ..+..+ ..
T Consensus 189 nPf~~~~i~a~G~--RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~---~~ 263 (347)
T 3das_A 189 NPFPGSPVYSYGH--RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD---EA 263 (347)
T ss_dssp CSSTTCCEEEBCC--SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT---TC
T ss_pred CCCCCCeEEeeCC--CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC---CC
Confidence 00 00000111 345689999998887773 3332333333322211 111111 12
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 1011 ~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
....++|. +|.+++..-..+.|....+...
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCC
Confidence 45677776 4666665555666666666544
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.024 Score=60.56 Aligned_cols=205 Identities=9% Similarity=0.045 Sum_probs=109.5
Q ss_pred cEEEEEeCCCcEEEEEeecCeEEEEEecC-CCCeeEEEE--cc-CCCeEEEE-eCCCcEEEEECCCCcccceeeEeccCC
Q 001184 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGH-QKHITGLAF--ST-NLNILVSS-GSDAQLIFWNTDTWEKRKSIAIQLPAG 962 (1130)
Q Consensus 888 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~--s~-dg~~L~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 962 (1130)
.++++++.||.|+-.|..+|+.+-+++.. ..++....- .+ ++..++.. +.||.|..++..+|... .....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~--~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK--LPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE--EEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE--eeeccccc
Confidence 37888999999999999999998887654 122222110 11 22333333 58999999998886433 22222211
Q ss_pred CCCCCeEE---EEE------cCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCC----CCeEEEEEC-----CCCCEE
Q 001184 963 KLPVGETR---VQF------HSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLS----SPISSAAYS-----CNSQLI 1024 (1130)
Q Consensus 963 ~~~~~v~~---~~~------s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~----~~v~~v~~s-----~dg~~l 1024 (1130)
-...++.. ... +.++..++.+.++.+...|+.+|+.+..+....... ....|.... ..+..|
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 11011110 001 245555555889999999999999998886542100 001111111 124567
Q ss_pred EEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCCCccCC-cc
Q 001184 1025 YATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKW-GV 1101 (1130)
Q Consensus 1025 ~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~~~~~w-~~ 1101 (1130)
+.+..+..+.+.+ .+|+ +..+....+.+.. ....+.. .... ..|+.+ +.++.||.|.-.|..++..+| ..
T Consensus 169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~--~~~~~~~-~~~~-s~Dg~~-~~~~~dg~v~A~d~~~G~~~W~~~ 239 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV--LDVPLAL-QNTF-SKDGMC-IAPFRDKSLLASDLDFRIARWVSP 239 (339)
T ss_dssp EEEEEEEECEECC-TTSC-CCCCEEEEEECCT--TTHHHHT-TCSS-CSSSCC-EEEETTTEEEEECSTTCCEEEECC
T ss_pred EEecceEEEEEEC-CCCC-eEEEecccccccc--ccccccc-cccc-ccCCcE-EEECCCCEEEEEECCCCcEEEEee
Confidence 7777777777777 4554 3222111110000 0000000 0000 013444 557889999999999999999 54
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.30 E-value=0.15 Score=55.09 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=90.7
Q ss_pred CCcEEEEEeCCCcEEEEEeecCeEEEEEecC----CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccc--------
Q 001184 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH----QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK-------- 953 (1130)
Q Consensus 886 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h----~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~-------- 953 (1130)
++.-++++ .++.||.-++.....-+.+... -+.|..+..||+|++||..+.. .|.|-.+..+....
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccc
Confidence 34444433 2456776666533323333322 2368889999999999998755 68888887322111
Q ss_pred --eeeEecc--CCCCCCCeEEEEEcCCCc---EEEE-EcCCcEEEEECCCceeee-ee------ecCCCCCCCeEEEEEC
Q 001184 954 --SIAIQLP--AGKLPVGETRVQFHSDQV---RLLV-NHETQLAIYDGSKMECIR-QW------VPQDVLSSPISSAAYS 1018 (1130)
Q Consensus 954 --~~~~~~~--~~~~~~~v~~~~~s~d~~---~l~~-~~d~~i~v~d~~~~~~~~-~~------~~~~~~~~~v~~v~~s 1018 (1130)
....... .......|..+.|+|-+. .|++ ..|+.|++||+....... .+ .+.......|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 1112221 111247899999999543 4554 899999999998522111 11 1222223689999999
Q ss_pred CCCCEEEEEe--CCCcEEEE
Q 001184 1019 CNSQLIYATF--TDGSIGVF 1036 (1130)
Q Consensus 1019 ~dg~~l~t~~--~Dg~i~vw 1036 (1130)
++|-.|...+ ..|-|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9988777755 77887644
No 330
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.27 E-value=0.26 Score=52.40 Aligned_cols=188 Identities=14% Similarity=0.159 Sum_probs=98.6
Q ss_pred CCCEEEEEe-C-----CeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCCC-----cEEEEEeecCeEEE
Q 001184 844 NDSYVMSAG-G-----GKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEVKT 911 (1130)
Q Consensus 844 dg~~la~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~~~~ 911 (1130)
++++++.|+ + ..+.+||..+.+-...-....... .+++.. ++.+++.|+.++ .+.+||..+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 667777765 2 358999998765433322111111 222222 567888887654 57788887665332
Q ss_pred E--EecCCCCeeEEEEccCCCeEEEEeCC-------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 912 K--LKGHQKHITGLAFSTNLNILVSSGSD-------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 912 ~--l~~h~~~V~~l~~s~dg~~L~s~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
. +......- +++. -+++.++.|+.+ ..+.+||+.+.+-..... .+... .... ++. -++++++.
T Consensus 139 ~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~~-~~~-~~~~iyv~ 210 (302)
T 2xn4_A 139 VAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE--MSTRR--SGAG-VGV-LNNLLYAV 210 (302)
T ss_dssp ECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC--CSSCC--BSCE-EEE-ETTEEEEE
T ss_pred cCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC--Ccccc--cccc-EEE-ECCEEEEE
Confidence 2 22111111 2222 256666766643 348899988754332211 11111 1112 222 25565555
Q ss_pred E-c-----CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEeCCCcccc
Q 001184 983 N-H-----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG-----SIGVFDADSLRLR 1044 (1130)
Q Consensus 983 ~-~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg-----~i~vwd~~~~~~~ 1044 (1130)
+ . ...+.+||..+.+-...-..... ......+ .-++++++.|+.++ .+.+||..+.+..
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-RRNAGVC--AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCCCCCcccceEEEEeCCCCCEeeCCCCCCc-cccCeEE--EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 3 2 24699999987654433211111 1111222 23778888887653 4899999887654
No 331
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.12 E-value=2.4 Score=47.45 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=71.4
Q ss_pred ceeEEEEecCCCEEEEEe--CCeEEEEECCCcee-------------EEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcE
Q 001184 835 VVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKV-------------MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v 899 (1130)
....+.++|||+++++++ +.++.++|+..... ....+ -.-.....+|.+ +|....+-.-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence 345688899999999988 78899999874211 22222 234577889999 77666677799999
Q ss_pred EEEEeecC----------eEEEEEecCCCCeeEEEE------ccCCCeEEEEeC
Q 001184 900 QIYNVRVD----------EVKTKLKGHQKHITGLAF------STNLNILVSSGS 937 (1130)
Q Consensus 900 ~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~L~s~s~ 937 (1130)
.-|++... ..+.++..|-.+ -.+.. .+||++|++...
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEES
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecc
Confidence 99999763 567777776543 33433 579999999864
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.92 E-value=0.65 Score=58.21 Aligned_cols=97 Identities=6% Similarity=0.100 Sum_probs=60.2
Q ss_pred CcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEeccCCCCCcceEEEcCCCC
Q 001184 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1130)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~~~~ 645 (1130)
..+|.+.|+..+..+..-.- ...+.-++|..+.++.-. ..++.|||+++.+.++...... .|.--.|-.+.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEEecCCC-
Confidence 45788889887654422111 122345788877666654 6899999999988888776654 34444454333
Q ss_pred EEEEEeCCCcEEEEEcCCCchhhhhhc
Q 001184 646 LLVVTTADQGIKILANADGLRALRAIE 672 (1130)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1130)
.|+..+ +..|.-|++.......+.+.
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 344443 45799999865434444443
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.86 E-value=0.53 Score=51.39 Aligned_cols=244 Identities=16% Similarity=0.122 Sum_probs=114.8
Q ss_pred CCCEEEEEe--CCeEEEEECCC--ce--eEEEEeCCCCCeEEEEEeCCCCcEEEEEeC-C---------CcEEEEEeecC
Q 001184 844 NDSYVMSAG--GGKVSLFNMMN--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGME-D---------STIQIYNVRVD 907 (1130)
Q Consensus 844 dg~~la~~~--dg~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~sp~~~~~lasg~~-d---------g~v~iwd~~~~ 907 (1130)
++++++.|+ ...+.+||..+ .+ .+..+......-.+++.. ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 777777776 46799999864 22 222222111112223332 5677777776 2 46889998876
Q ss_pred eEEEEEecC-CCCeeEEEEccCCCeEEEEeCC---------------------------------------CcEEEEECC
Q 001184 908 EVKTKLKGH-QKHITGLAFSTNLNILVSSGSD---------------------------------------AQLIFWNTD 947 (1130)
Q Consensus 908 ~~~~~l~~h-~~~V~~l~~s~dg~~L~s~s~D---------------------------------------g~i~vwd~~ 947 (1130)
+-...-... .......+...+++.++.|+.+ ..+.+||..
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 532211111 1111222223577788888765 468899988
Q ss_pred CCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-c------CCcEEEEEC--CCceeeeeeecCCCCCCCeEEEEEC
Q 001184 948 TWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-H------ETQLAIYDG--SKMECIRQWVPQDVLSSPISSAAYS 1018 (1130)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~------d~~i~v~d~--~~~~~~~~~~~~~~~~~~v~~v~~s 1018 (1130)
+.+-.... ..+.... .. .+++.. ++++++.+ . ...+.+||+ .+.+-... ...........+.+..
T Consensus 177 ~~~W~~~~--~~p~~~~-~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~-~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 177 TQQWSYAG--ESPWYGT-AG-AAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL-APVSSPDGVAGGFAGI 250 (357)
T ss_dssp TTEEEEEE--ECSSCCC-BS-CEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEEC-CCSSTTTCCBSCEEEE
T ss_pred CCcEEECC--CCCCCCc-cc-ccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEec-CCCCCCcccccceEEE
Confidence 75543322 1221111 11 222222 45555543 1 345777876 44332221 1111001111222233
Q ss_pred CCCCEEEEEeCC----------------------CcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCC
Q 001184 1019 CNSQLIYATFTD----------------------GSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPN 1076 (1130)
Q Consensus 1019 ~dg~~l~t~~~D----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1130)
.++++++.|+.+ ..+.+||+.+.+....-. ++... ..| . ++.. ++.
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r-~~~---~-~~~~---~~~ 318 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQGR-AYG---V-SLPW---NNS 318 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSCC-BSS---E-EEEE---TTE
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCCc-ccc---e-eEEe---CCE
Confidence 467788887732 257899998776443211 11110 112 1 1222 567
Q ss_pred EEEEEeCCC--c--EEEEeCCCCccCCcccccCCC
Q 001184 1077 QLAVGLTDG--S--VKVIEPSETERKWGVAVPVDN 1107 (1130)
Q Consensus 1077 ~l~s~~~Dg--~--v~vW~~~~~~~~w~~~~p~~~ 1107 (1130)
+++.|+.++ . =.+|-+.-...||....|.++
T Consensus 319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~ 353 (357)
T 2uvk_A 319 LLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHH 353 (357)
T ss_dssp EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC----
T ss_pred EEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccc
Confidence 899999754 2 235544444555887777653
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.79 E-value=0.43 Score=51.01 Aligned_cols=195 Identities=11% Similarity=0.065 Sum_probs=98.4
Q ss_pred EEecCCCEEEEEe-----C-------CeEEEEECCCceeEEEEeCCCCCe-EEEEEeCCCCcEEEEEeCC--------Cc
Q 001184 840 ALSKNDSYVMSAG-----G-------GKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED--------ST 898 (1130)
Q Consensus 840 ~~s~dg~~la~~~-----d-------g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~~~~~lasg~~d--------g~ 898 (1130)
+...++++++.|+ + ..+.+||..+.+-...-....... .+++.. ++.+++.|+.+ ..
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence 3345777777665 1 127888988765432211111111 122222 56777777743 35
Q ss_pred EEEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeC-C-----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEE
Q 001184 899 IQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS-D-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972 (1130)
Q Consensus 899 v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 972 (1130)
+.+||..+.+-...-......-...+...+++.++.|+. + ..+.+||+.+.+-..... .+... .... ++
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~~-~~ 193 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP--MQTAR--SLFG-AT 193 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC--CSSCC--BSCE-EE
T ss_pred EEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC--CCCch--hceE-EE
Confidence 889998876432211111111111122246677777776 2 458899988754322211 11111 1112 22
Q ss_pred EcCCCcEEEE-EcC-----CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC--------------c
Q 001184 973 FHSDQVRLLV-NHE-----TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG--------------S 1032 (1130)
Q Consensus 973 ~s~d~~~l~~-~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg--------------~ 1032 (1130)
.. ++++++. +.+ ..+.+||+.+.+-...-..... .....++. -++++++.|+.++ .
T Consensus 194 ~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~ 269 (315)
T 4asc_A 194 VH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-RSSLSLVS--LVGTLYAIGGFATLETESGELVPTELND 269 (315)
T ss_dssp EE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred EE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-ccceeEEE--ECCEEEEECCccccCcCCccccccccCc
Confidence 22 5555555 333 2588999987654433221111 11222222 2678888887532 3
Q ss_pred EEEEeCCCccccc
Q 001184 1033 IGVFDADSLRLRC 1045 (1130)
Q Consensus 1033 i~vwd~~~~~~~~ 1045 (1130)
+.+||..+.+...
T Consensus 270 v~~yd~~~~~W~~ 282 (315)
T 4asc_A 270 IWRYNEEEKKWEG 282 (315)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEecCCCChhhh
Confidence 7788988776543
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.77 E-value=2.3 Score=44.65 Aligned_cols=177 Identities=12% Similarity=0.101 Sum_probs=103.0
Q ss_pred EEEEecCCCEEEEEe--C-------------CeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEe--CCCcEE
Q 001184 838 CVALSKNDSYVMSAG--G-------------GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM--EDSTIQ 900 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~--d-------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~--~dg~v~ 900 (1130)
+--++++|.+|.... + ..|+..++.+.+....... . +..|++ ++..|+-.. .++.-.
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---~--~~~~s~-~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD---P--CIYASL-IGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS---C--EEEEEE-ETTEEEEEEESSSSCEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC---C--ccEEEE-eCCEEEEEeecCCCCce
Confidence 345688999988775 2 2477788877654333221 1 236777 566666665 344444
Q ss_pred EEEee-cCeEEEEEecCCCCeeEEEEccCCCeEEEEeC-CCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCc
Q 001184 901 IYNVR-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1130)
Q Consensus 901 iwd~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 978 (1130)
||.+. .+.....+..+.. .+++++++.|.-.+. ...|.+-++..+.... + ..+ .. ...++|++.
T Consensus 131 Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~---l--~~~----~~-~~~~~P~g~ 196 (302)
T 3s25_A 131 LYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL---F--YDC----NC-YKPVVLDDT 196 (302)
T ss_dssp EEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE---E--ECS----CE-EEEEEEETT
T ss_pred EEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE---E--eCC----Cc-cceeeecCC
Confidence 55444 2333445554433 456889998886665 5678888877654321 1 111 11 234669999
Q ss_pred EEEEEc---CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC--CCcEEEEeCCCcc
Q 001184 979 RLLVNH---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT--DGSIGVFDADSLR 1042 (1130)
Q Consensus 979 ~l~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~--Dg~i~vwd~~~~~ 1042 (1130)
+|+-.. ...|..-++..... ..+.. ..+ ..|+|++++|+-+.. .+.|..-++....
T Consensus 197 ~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 197 NVYYMDVNRDNAIVHVNINNPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EEEEEEGGGTTEEEEECSSSCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred EEEEEEcCCCcEEEEEECCCCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 888643 23566667665443 33321 233 347888998886642 3567777776543
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.72 E-value=1.2 Score=47.39 Aligned_cols=223 Identities=15% Similarity=0.132 Sum_probs=113.2
Q ss_pred CeEEEEECCCceeEEE-EeCCCCCeEEEEEeCCCCcEEEEEeC----CC-------cEEEEEeecCeEEEE--EecCCCC
Q 001184 854 GKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGME----DS-------TIQIYNVRVDEVKTK--LKGHQKH 919 (1130)
Q Consensus 854 g~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~~~~~lasg~~----dg-------~v~iwd~~~~~~~~~--l~~h~~~ 919 (1130)
..+..||..+.+-... +..........+... ++.+++.|+. ++ .+.+||..+.+-... +......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 4588999988765442 222222333333444 6788888873 12 177788776643221 1111111
Q ss_pred eeEEEEccCCCeEEEEeCC-------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEE-c------C
Q 001184 920 ITGLAFSTNLNILVSSGSD-------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-H------E 985 (1130)
Q Consensus 920 V~~l~~s~dg~~L~s~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~------d 985 (1130)
-..+.+ +++.++.|+.+ ..+.+||..+.+-..... .+... ... +++. .++++++.+ . -
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~-~~~~-~~~~iyv~GG~~~~~~~~ 174 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN--LPIKV--YGH-NVIS-HNGMIYCLGGKTDDKKCT 174 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC--CSSCE--ESC-EEEE-ETTEEEEECCEESSSCBC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC--CCCcc--ccc-EEEE-ECCEEEEEcCCCCCCCcc
Confidence 122222 66777777754 247788888754322211 11111 111 1222 456655553 2 2
Q ss_pred CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccccccCCCcccccCCCCC
Q 001184 986 TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMSQASPNS 1060 (1130)
Q Consensus 986 ~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1130)
..+.+||..+.+-...-..... .....++. -++++++.|+.+ ..+.+||..+.+....-. .+... ..
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r-~~ 246 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMKTP-RSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE----FPQER-SS 246 (318)
T ss_dssp CCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC----CSSCC-BS
T ss_pred ceEEEEcCCCCEEEECCCCCCC-cccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC----CCCcc-cc
Confidence 4589999988764433211110 11112222 367888888743 357889998876443211 11110 11
Q ss_pred ceeeeEEEEEcCCCCCEEEEEeCC--------------CcEEEEeCCCCccCCccc
Q 001184 1061 QTVFPLVVTSHPQEPNQLAVGLTD--------------GSVKVIEPSETERKWGVA 1102 (1130)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~l~s~~~D--------------g~v~vW~~~~~~~~w~~~ 1102 (1130)
| .+ +.. ++.+++.|+.+ ..+.++|+.+.+ |...
T Consensus 247 ~---~~-~~~---~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~ 293 (318)
T 2woz_A 247 I---SL-VSL---AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE--WAGM 293 (318)
T ss_dssp C---EE-EEE---TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE--EEEE
T ss_pred e---EE-EEE---CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE--ehhh
Confidence 2 11 121 46788888764 347778887655 8765
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.66 E-value=0.39 Score=51.10 Aligned_cols=188 Identities=13% Similarity=0.089 Sum_probs=97.2
Q ss_pred CCCEEEEEeC----------CeEEEEECCCceeEEEEeCCCCC-eEEEEEeCCCCcEEEEEeCC-----CcEEEEEeecC
Q 001184 844 NDSYVMSAGG----------GKVSLFNMMNFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGMED-----STIQIYNVRVD 907 (1130)
Q Consensus 844 dg~~la~~~d----------g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~ 907 (1130)
++++++.|+. ..+.+||..+.+-...-...... -.+++.. ++++++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 6666666542 35889998876543322111111 1122222 56777777644 35888998776
Q ss_pred eEEEE--EecCCCCeeEEEEccCCCeEEEEeCC-----CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEE
Q 001184 908 EVKTK--LKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1130)
Q Consensus 908 ~~~~~--l~~h~~~V~~l~~s~dg~~L~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 980 (1130)
+-... +......-.++.+ +++.++.|+.+ ..+.+||+.+.+-..... .+... .....+.+ +++++
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~~~~~~--~~~iy 219 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA--MNTIR--SGAGVCVL--HNCIY 219 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC--CSSCC--BSCEEEEE--TTEEE
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC--CCCcc--ccceEEEE--CCEEE
Confidence 43222 2111111122222 66777777654 458899988754322211 11111 11222222 55655
Q ss_pred EEE-c-----CCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC-----CcEEEEeCCCcccc
Q 001184 981 LVN-H-----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLR 1044 (1130)
Q Consensus 981 ~~~-~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D-----g~i~vwd~~~~~~~ 1044 (1130)
+.+ . -..+.+||+.+.+-...-..... .....++. -++++++.|+.+ ..+.+||..+.+..
T Consensus 220 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 220 AAGGYDGQDQLNSVERYDVETETWTFVAPMKHR-RSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp EECCBCSSSBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEeCCCCCCccceEEEEeCCCCcEEECCCCCCC-ccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 553 3 25699999987654432211110 11122222 267888888754 35788888876543
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.62 E-value=0.33 Score=60.79 Aligned_cols=239 Identities=11% Similarity=0.142 Sum_probs=139.1
Q ss_pred EEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEEeCCCe
Q 001184 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1130)
Q Consensus 353 v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~~~d~~ 432 (1130)
.-.+|..+ ++|.=. ..++.|+|+++...+....+ ...|..-.|-.+.. |+..+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~-l~lVT-~~a 126 (1630)
T 1xi4_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNT-VALVT-DNA 126 (1630)
T ss_pred hccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCe-eEEEc-CCe
Confidence 34566665 565543 56899999998877653221 33577777865543 44333 346
Q ss_pred EEEEEecCCccceeeeeeecC----CCCeeEEEEecCCCceEEEEEc------CCCcEEEEecCCCeeeEecCCCcCEEE
Q 001184 433 IHLYTYQGSNDLCQSLEIDAH----VGGVNDLAFSYPNKQLCIVTCG------DDKLIRVWDLSGRKLFQFEGHEAPVYS 502 (1130)
Q Consensus 433 i~vwd~~~~~~~~~~~~~~~h----~~~V~~i~~s~d~~~l~l~s~s------~d~~v~iwd~~~~~~~~~~~h~~~v~~ 502 (1130)
|.-|++.+.... .+.+..| ...|..-..+++.+.+ +++|= -.|.+.+|..+.+..+.+.||.+.-..
T Consensus 127 VyHW~~~~~s~P--~k~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~ 203 (1630)
T 1xi4_A 127 VYHWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQ 203 (1630)
T ss_pred EEEeccCCCCcc--HHHHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeecccccchhhhHhHhhhhe
Confidence 999999753322 2233444 3457777788888853 33321 357889999777777777788766555
Q ss_pred EeecccCCccEEEEEec----CCcEEEEEccCC---ccee-----e--ecC--CCccEEEEEEecCCCeEEEeeecCCCC
Q 001184 503 VCPHQKENIHFIFSTAV----DGKIKAWLYDNV---GSRV-----D--YDA--PGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1130)
Q Consensus 503 ~~~~~~~~~~~l~s~s~----dg~i~vwd~~~~---~~~~-----~--~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1130)
+.....+....|++-.. .+.+++-++... ...+ . +.. ...-..++..++.-..+...+. .
T Consensus 204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~ 279 (1630)
T 1xi4_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 279 (1630)
T ss_pred eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----C
Confidence 54432222222333222 268888888543 1111 0 111 1223456777777666766664 8
Q ss_pred cEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001184 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1130)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 623 (1130)
|.|+++|+.++.++..-+-... .+...+......-+++....|.|.--.++....+
T Consensus 280 G~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred ceEEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 9999999999988765443222 4444444433344555556666655555554443
No 339
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.41 E-value=3.2 Score=43.60 Aligned_cols=181 Identities=13% Similarity=0.062 Sum_probs=100.4
Q ss_pred EEEEecCCCeEEEEEeCc-------------CeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEc
Q 001184 352 SMDFHPFHHTLLVVGCGD-------------GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1130)
Q Consensus 352 ~v~fspdg~~llasg~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 418 (1130)
+--|+++|+++..+...+ +.|+..+++.++... +.... +..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~~----~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPDP----CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECSC----EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecCC----ccEEE
Confidence 445789999877776544 467777777654322 11111 23788
Q ss_pred CCCCEEEEEe--CCC--eEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec
Q 001184 419 PDGNFIGVAF--TKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE 494 (1130)
Q Consensus 419 pdg~~las~~--~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~ 494 (1130)
+++++|+... .++ .|..-++.+.. .. .+..+.. .+|+++++. +..+......|..-+..|.....+.
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999998876 333 45555555433 22 2333432 467888985 3334444677888887666555553
Q ss_pred CCCcCEEEEeecccCCccEEEEEecCC--cEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEe
Q 001184 495 GHEAPVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1130)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1130)
. +... ..++| ++..|+-....+ .|..-+++...... +.. ..+ ..|+|++++|+.+... ....|..-
T Consensus 184 ~--~~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~--~~~--~~~~~~g~~Iy~~~~~--~~~~i~~~ 251 (302)
T 3s25_A 184 D--CNCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE--ANI--EHYNVYGSLIFYQRGG--DNPALCVV 251 (302)
T ss_dssp C--SCEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC--SCE--EEEEEETTEEEEEECS--SSCEEEEE
T ss_pred C--CCcc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC--CCc--ceEEECCCEEEEEECC--CCcEEEEE
Confidence 2 2222 22333 345666554433 45555555444332 222 223 3488899999876421 13677777
Q ss_pred eCCCC
Q 001184 573 NESEG 577 (1130)
Q Consensus 573 d~~~~ 577 (1130)
++...
T Consensus 252 ~~DG~ 256 (302)
T 3s25_A 252 KNDGT 256 (302)
T ss_dssp ETTSC
T ss_pred ECCCC
Confidence 76543
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.22 E-value=0.62 Score=50.82 Aligned_cols=59 Identities=5% Similarity=-0.112 Sum_probs=30.6
Q ss_pred cEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCC------cEEEEeCCCcccccccC
Q 001184 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG------SIGVFDADSLRLRCRIA 1048 (1130)
Q Consensus 987 ~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg------~i~vwd~~~~~~~~~~~ 1048 (1130)
.+.+||+.+.+-...-..... ... ..+...++++++.|+.++ .|.++++++++......
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~-r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG-RAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSSC-CBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCCC-ccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 577999886543332111111 111 222334788888888543 36667888888765544
No 341
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.09 E-value=0.089 Score=51.28 Aligned_cols=145 Identities=11% Similarity=-0.071 Sum_probs=81.5
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEECCCcee------EEEEeC-CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKV------MTTFMS-PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~------~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 907 (1130)
.+..++|+|+|.+.++ .+|.+.-.+..+... -..+-. --..-.++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999998888 888877777654211 111110 001136789999 8888777 5698877765331
Q ss_pred eE-------EEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccccee-eEeccCCCCCCCeEEEEEcCCCcE
Q 001184 908 EV-------KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI-AIQLPAGKLPVGETRVQFHSDQVR 979 (1130)
Q Consensus 908 ~~-------~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~ 979 (1130)
.. ...-.+-=..+..|.|.|+|.+.+.. |+.++-+...+.....-. .........-.....+.|.+++.+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 10 01111112457899999999877766 776543332221110000 000000011124455778999988
Q ss_pred EEEEcCC
Q 001184 980 LLVNHET 986 (1130)
Q Consensus 980 l~~~~d~ 986 (1130)
.++. ++
T Consensus 196 ~~v~-~g 201 (236)
T 1tl2_A 196 FGVQ-GG 201 (236)
T ss_dssp EEEE-TT
T ss_pred EEEe-CC
Confidence 8777 55
No 342
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.09 E-value=0.014 Score=46.62 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc--HHHHHHHHhccCHHHHHHHh
Q 001184 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFFN--MKYFEEKALAGEWDEIEKYL 57 (1130)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l 57 (1130)
++|+.+-|++||..+||.+++.+|.+|.|+..+ ...-.+-+|.-.|..++.+-
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQ 64 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQ 64 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHH
Confidence 468999999999999999999999999998775 11223445555666655443
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.98 E-value=1 Score=48.11 Aligned_cols=196 Identities=11% Similarity=0.014 Sum_probs=97.1
Q ss_pred EEecCCCEEEEEeC-----C-------eEEEEECCCceeEEEEeCCCCC-eEEEEEeCCCCcEEEEEeCC-------CcE
Q 001184 840 ALSKNDSYVMSAGG-----G-------KVSLFNMMNFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGMED-------STI 899 (1130)
Q Consensus 840 ~~s~dg~~la~~~d-----g-------~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~~~~~lasg~~d-------g~v 899 (1130)
+...++++++.|+. + .+.+||..+.+-...-...... -.+++.. ++++++.|+.+ ..+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 34457777777761 1 1778888776543321111111 1222222 56777778764 247
Q ss_pred EEEEeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCC------CcEEEEECCCCcccceeeEeccCCCCCCCeEEEEE
Q 001184 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF 973 (1130)
Q Consensus 900 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 973 (1130)
.+||..+.+-...-......-..-+...+++.++.|+.+ ..+.+||+.+.+-..... .+... ... .++.
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r--~~~-~~~~ 204 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP--MKTPR--SMF-GVAI 204 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC--CSSCC--BSC-EEEE
T ss_pred EEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC--CCCCc--ccc-eEEE
Confidence 888887764332211011111111122466777776642 358899998854322211 11111 111 2222
Q ss_pred cCCCcEEEEE-cC-----CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCC--------------CcE
Q 001184 974 HSDQVRLLVN-HE-----TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD--------------GSI 1033 (1130)
Q Consensus 974 s~d~~~l~~~-~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D--------------g~i 1033 (1130)
-++++++.+ .+ ..+.+||+.+.+-...-.... .......+ .-++++++.|+.+ ..+
T Consensus 205 -~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v 280 (318)
T 2woz_A 205 -HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDI 280 (318)
T ss_dssp -ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCE
T ss_pred -ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceEEE--EECCEEEEECCeeccCCCCceeccceeeeE
Confidence 255555553 21 357789988765433211111 01111222 2367788887754 358
Q ss_pred EEEeCCCcccccc
Q 001184 1034 GVFDADSLRLRCR 1046 (1130)
Q Consensus 1034 ~vwd~~~~~~~~~ 1046 (1130)
.+||..+.+....
T Consensus 281 ~~yd~~~~~W~~~ 293 (318)
T 2woz_A 281 WKYEDDKKEWAGM 293 (318)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEeCCCCEehhh
Confidence 8889888765433
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.71 E-value=0.14 Score=49.98 Aligned_cols=148 Identities=16% Similarity=0.083 Sum_probs=83.7
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE------EEEEe--cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECC
Q 001184 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV------KTKLK--GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1130)
Q Consensus 876 ~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~------~~~l~--~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~ 947 (1130)
.++.++|+| ++.+.++ .+|.++-.+..+... -..+- +-.. -.++.|.|+|.+.++ .||.|+-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 577999999 8887777 677666555533111 11110 1111 478999999988888 56988877754
Q ss_pred CCccccee--eEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCCceee-----eeeecCCCCCCCeEEEEECCC
Q 001184 948 TWEKRKSI--AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECI-----RQWVPQDVLSSPISSAAYSCN 1020 (1130)
Q Consensus 948 ~~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~-----~~~~~~~~~~~~v~~v~~s~d 1020 (1130)
+.....-. -..+-... -..+..|.|.|+|.+.++. ++.++-....++... ....... .-..-..+.|+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~g-w~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~-g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGG-WSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQG-GWDTFKFLFFSSV 192 (236)
T ss_dssp CSTTCCHHHHSEEEECSS-GGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESS-SGGGEEEEEECTT
T ss_pred cCCCCceeccccEeccCC-CCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccC-CcceEEEEEECCC
Confidence 32221110 00000000 0367899999999999988 877654333321100 1111100 0223445678999
Q ss_pred CCEEEEEeCCCcEE
Q 001184 1021 SQLIYATFTDGSIG 1034 (1130)
Q Consensus 1021 g~~l~t~~~Dg~i~ 1034 (1130)
|.+.++. +|.++
T Consensus 193 G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 193 GTLFGVQ--GGKFY 204 (236)
T ss_dssp SCEEEEE--TTEEE
T ss_pred CcEEEEe--CCeEE
Confidence 9877766 66443
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.91 E-value=5.5 Score=44.68 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=61.9
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeE--EEEEec------CCCCeeEEEEccC---CCeEEEEe-C----
Q 001184 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--KTKLKG------HQKHITGLAFSTN---LNILVSSG-S---- 937 (1130)
Q Consensus 874 ~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~V~~l~~s~d---g~~L~s~s-~---- 937 (1130)
-.....|+|.| +++++++-...+.|++++..+++. +..+.. ..+....|+|+|| +.+|..+. .
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999 788776554445788887655543 222321 2355779999995 44444433 2
Q ss_pred --------CCcEEEEECCCCc--c--cceeeEeccCCCCCCCeEEEEEcCCCcEEEE
Q 001184 938 --------DAQLIFWNTDTWE--K--RKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1130)
Q Consensus 938 --------Dg~i~vwd~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 982 (1130)
...|.-|+++... . ........+.. .......++|.|||.+.++
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEE
Confidence 2346666654321 1 11111122222 1245789999999987776
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.70 E-value=1.3 Score=47.04 Aligned_cols=190 Identities=9% Similarity=-0.042 Sum_probs=96.0
Q ss_pred EEEEEeCCCeEEEEEecCCccceeeeeeecC-CCCeeEEEE--ecCCCceEEEEE-cCCCcEEEEe-cCCCeeeEecC--
Q 001184 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAH-VGGVNDLAF--SYPNKQLCIVTC-GDDKLIRVWD-LSGRKLFQFEG-- 495 (1130)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~V~~i~~--s~d~~~l~l~s~-s~d~~v~iwd-~~~~~~~~~~~-- 495 (1130)
.+++++.||.|.-.|.++|+..-.. ... ..++....- .+.+.. .++.. +.||.+..+| .+|.....+.-
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~---~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSI---EPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEE---CGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEe---cCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 6777888888888888888754422 211 111211100 011222 33333 6899999999 66644433321
Q ss_pred --CCcCEEEEeecccC-------CccEEEEEecCCcEEEEEccCCcceeeecCCCcc-------EEEEEEe-----cCCC
Q 001184 496 --HEAPVYSVCPHQKE-------NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW-------CTTMLYS-----ADGS 554 (1130)
Q Consensus 496 --h~~~v~~~~~~~~~-------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------v~~~~~s-----~~~~ 554 (1130)
...++.. .-.|-- .+..+++|+.+|++...|+.+++.+..+...... ..|.... ..+.
T Consensus 88 lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 88 LVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp HHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred ceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 1222221 000001 3468899999999999999999998887654210 0011110 1234
Q ss_pred eEEEeeecCCCCcEEEEeeCCCCceeEE--E---ecccCc-eeE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeE
Q 001184 555 RLFSCGTSKEGDSHLVEWNESEGALKRT--Y---IGFRKK-SAG-VVQFDTTRNRILAAGEDNQIKFWDMDNVNMLT 624 (1130)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~---~~~~~~-~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 624 (1130)
.++.+.. +..+.+.+ ++|+ +.. + ...... .+. .-..+.++.+ +.++.||.|+.+|..+|+.+.
T Consensus 167 ~v~ig~~----~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKT----IFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEE----EEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecc----eEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 5555543 44555555 3443 111 1 110000 000 0001223454 557888888888888887665
No 347
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.59 E-value=11 Score=42.05 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=62.0
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeec--CCCccEEEEEEcCC---C
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK--DSSISVSRVAWSPD---G 421 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~spd---g 421 (1130)
-...++++|.|||+ ++++-...+.|++++..+++.... .++. ..+. ...+....|+|+|| +
T Consensus 26 l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~-----~~~~--------~~~~~~~g~~Gllgia~~Pdf~~~ 91 (454)
T 1cru_A 26 LNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTV-----FQVP--------EIVNDADGQNGLLGFAFHPDFKNN 91 (454)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-----EECT--------TCCCCTTSSCSEEEEEECTTTTTS
T ss_pred CCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEE-----ecCC--------ccccccCCCCceeEEEECCCcCcC
Confidence 34778999999997 566543334788888765543210 0000 0111 13567889999995 5
Q ss_pred CEEEEEeC-------------CCeEEEEEecCCc-cc---eeeee-ee-cCCCCeeEEEEecCCCceEEEEE
Q 001184 422 NFIGVAFT-------------KHLIHLYTYQGSN-DL---CQSLE-ID-AHVGGVNDLAFSYPNKQLCIVTC 474 (1130)
Q Consensus 422 ~~las~~~-------------d~~i~vwd~~~~~-~~---~~~~~-~~-~h~~~V~~i~~s~d~~~l~l~s~ 474 (1130)
.+|..+.. ...|.-|+...+. .+ +.... +. ........|+|.|||. |++.+|
T Consensus 92 g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred CEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 54444432 2356666664321 11 11111 11 1123478999999997 244444
No 348
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=92.98 E-value=16 Score=43.44 Aligned_cols=247 Identities=8% Similarity=0.012 Sum_probs=123.3
Q ss_pred EEEE-EecCCCeEEEEEeCcC----eEEEEeCCCCceeecccceeeeccccccceeeeeecC---CCccEEEEEEcCCCC
Q 001184 351 VSMD-FHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD---SSISVSRVAWSPDGN 422 (1130)
Q Consensus 351 ~~v~-fspdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~v~~spdg~ 422 (1130)
..+. ++||+++++++-|..| .|+++|+.+++.+.. .|. ... ++ -......++|-.+..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~------------k~~~~~~~~~~~~~W~d~~~ 197 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PIT------------NSGKLLEGKFTYPTWINKDT 197 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBC------------TTCCBCCEETCCEEEEETTE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccc------------ccccccccccceeeEECCCE
Confidence 3444 8899998776655444 599999999987742 111 000 00 000113346763333
Q ss_pred EEEEE----------eCCCeEEEEEecCCccceeeeeeecCCCCe-eEEEEecCCCc---eEEEEEcCC---CcEEEEec
Q 001184 423 FIGVA----------FTKHLIHLYTYQGSNDLCQSLEIDAHVGGV-NDLAFSYPNKQ---LCIVTCGDD---KLIRVWDL 485 (1130)
Q Consensus 423 ~las~----------~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V-~~i~~s~d~~~---l~l~s~s~d---~~v~iwd~ 485 (1130)
.+++. +....|+.|.+-+...-. ...+.+....+ .....+++++. ..+++.+.+ ..+.+.|.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 276 (711)
T 4hvt_A 198 IIFNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDT 276 (711)
T ss_dssp EEECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEEC
T ss_pred EEEEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcC
Confidence 33321 122468888876643211 11344433333 34555677764 135554322 34556563
Q ss_pred C---CCeeeEecCCCcCEEEEeecccCCccEEEEE----------ecCCcEEEEEccCCc-------ceee-e-cCCCcc
Q 001184 486 S---GRKLFQFEGHEAPVYSVCPHQKENIHFIFST----------AVDGKIKAWLYDNVG-------SRVD-Y-DAPGLW 543 (1130)
Q Consensus 486 ~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~vwd~~~~~-------~~~~-~-~~~~~~ 543 (1130)
. ++ +..+....... +..+ .++.+++.. ...+.|...++.... .... + ......
T Consensus 277 ~~~~~~-~~~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (711)
T 4hvt_A 277 KYKNLK-LQKINMPSDAT--LQGS--FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEV 351 (711)
T ss_dssp SSSSCE-EEECCSCTTCE--EEEE--ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEE
T ss_pred CCCCCc-ceEeecCCcce--Eeee--ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCe
Confidence 3 43 23332222111 1111 122344422 246778888987642 1222 2 223446
Q ss_pred EEEEEEecCCCeEEEeeecCCCCcEEEEeeCCCCc-eeEE-EecccCceeEEEEEcCCCCE-EEEEe---CCCcEEEEeC
Q 001184 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRT-YIGFRKKSAGVVQFDTTRNR-ILAAG---EDNQIKFWDM 617 (1130)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~-l~~~~---~dg~i~vwd~ 617 (1130)
+..+.+..+ ..+++... ++...|.+++..++. .... +.-.....+......++++. +++.+ .-+.++.+|+
T Consensus 352 l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 352 FNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 778888865 34444432 445678899887664 2333 32221234555666676654 44433 3467888887
Q ss_pred CCCc
Q 001184 618 DNVN 621 (1130)
Q Consensus 618 ~~~~ 621 (1130)
. ++
T Consensus 429 ~-~~ 431 (711)
T 4hvt_A 429 T-HE 431 (711)
T ss_dssp T-SC
T ss_pred C-Cc
Confidence 6 44
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.61 E-value=7.2 Score=40.42 Aligned_cols=220 Identities=14% Similarity=0.135 Sum_probs=109.7
Q ss_pred CCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCCCCEEEEE
Q 001184 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1130)
Q Consensus 348 ~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~las~ 427 (1130)
..|..++..... .++. . ||.|..|-......+.. + ......|..++-..+- .+|.
T Consensus 24 ~~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-p------------------~~~~~~i~~ia~G~~h-s~~l- 78 (282)
T 3qhy_B 24 SGVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-P------------------AATQSGVDAIAAGNYH-SLAL- 78 (282)
T ss_dssp SSCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-C------------------GGGGSCCCEEEECSSE-EEEE-
T ss_pred CCCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-C------------------ccCCCCEEEEEeCCCE-EEEE-
Confidence 356666655442 3444 4 89999997665332210 0 0012246666665433 2333
Q ss_pred eCCCeEEEEEecCCccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe--cCCCeeeEecCCCcCEEEEee
Q 001184 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCP 505 (1130)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd--~~~~~~~~~~~h~~~v~~~~~ 505 (1130)
. ||.|..|-......+.....+ ...|..++...+-. +++ . ||.|..|- ..++.-.. ......|..++.
T Consensus 79 ~-~G~v~~wG~n~~Gqlg~P~~~---~~~v~~ia~G~~hs--~al--~-~G~v~~wG~n~~gqlg~~-~~~~~~i~~i~~ 148 (282)
T 3qhy_B 79 K-DGEVIAWGGNEDGQTTVPAEA---RSGVDAIAAGAWAS--YAL--K-DGKVIAWGDDSDGQTTVP-AEAQSGVTALDG 148 (282)
T ss_dssp E-TTEEEEEECCTTSTTCCCGGG---SSSEEEEEEETTEE--EEE--E-TTEEEEEECCTTSTTSCC-GGGGSSEEEEEE
T ss_pred E-CCEEEEeeCCCCCCCCCCccc---CCCeEEEECcCCEE--EEE--e-CCeEEEecCCCCCcCCCC-ccCCCCeEEEEc
Confidence 4 888888876543322211111 24677777765433 233 3 89999998 33433211 122345766654
Q ss_pred cccCCccEEEEEecCCcEEEEEccCCcceeeecCCCccEEEEEEecCCCeEEEeeecCCCCcEEEEeeCCC-CceeEEEe
Q 001184 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYI 584 (1130)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~ 584 (1130)
. ....++ -. ||.|..|-.......-.-......|..++.......+ . . ++.|+.|-... +++- +.
T Consensus 149 G---~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~a-l--~----~G~v~~wG~n~~gqlg--~p 214 (282)
T 3qhy_B 149 G---VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLA-L--K----DGKVIAWGDNRYKQTT--VP 214 (282)
T ss_dssp C---SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE-E--E----TTEEEEEECCTTSTTC--CC
T ss_pred c---cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEE-E--E----CCeEEEEECCCCCCCC--CC
Confidence 2 222333 33 7999999665433322111112346666554333222 2 3 78888886543 2221 01
Q ss_pred cccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001184 585 GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 619 (1130)
......+..++.... +.++.. ||.|+.|=...
T Consensus 215 ~~~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 215 TEALSGVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp GGGGSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred cccCCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 011123555554433 233333 89999997654
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.68 E-value=5.9 Score=47.41 Aligned_cols=199 Identities=8% Similarity=0.020 Sum_probs=99.8
Q ss_pred CCCCEEEEEeCC----CeEEEEEecCCccceeee-eee---cCCCC-eeEEEEec-CCCceEEEEEcCC------CcEEE
Q 001184 419 PDGNFIGVAFTK----HLIHLYTYQGSNDLCQSL-EID---AHVGG-VNDLAFSY-PNKQLCIVTCGDD------KLIRV 482 (1130)
Q Consensus 419 pdg~~las~~~d----~~i~vwd~~~~~~~~~~~-~~~---~h~~~-V~~i~~s~-d~~~l~l~s~s~d------~~v~i 482 (1130)
-++..++.||.+ ..+.+||..+++-.. .. .+. ..... -.+++..+ +++ +++.||.+ +.+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~-~~~~~p~~~~p~~R~~hs~~~~~~~~~--lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDM-KNIEVSSSEVPVARMCHTFTTISRNNQ--LLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEE-EECCCCCSCCCCCCBSCEEEEETTTTE--EEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEE-eccCCCCCCCCccccceEEEEEccCCE--EEEEcCCCCCCCccccEEE
Confidence 567778888753 468889988764221 11 100 01111 12333333 565 66666643 35778
Q ss_pred Ee-cCCCeeeE--ecCCCcCEEEEeecccCCccEEEEEecCC--cEEEEEccCCcceee-----ecCCCccEEEEEEecC
Q 001184 483 WD-LSGRKLFQ--FEGHEAPVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSRVD-----YDAPGLWCTTMLYSAD 552 (1130)
Q Consensus 483 wd-~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~s~~ 552 (1130)
|| .+...... +......-.++.+ .++.+++.|+.++ .+.+||..+..=... .........++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~---~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSL---PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEEC---TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEE---cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 88 44322211 1111111112211 2557778887655 688888766432211 1111112233555655
Q ss_pred -CCeEEEeeecCCC---CcEEEEeeCCCCce-----eEEEec--ccCceeEEEEEcCCCCEEEEEeC--------CCcEE
Q 001184 553 -GSRLFSCGTSKEG---DSHLVEWNESEGAL-----KRTYIG--FRKKSAGVVQFDTTRNRILAAGE--------DNQIK 613 (1130)
Q Consensus 553 -~~~l~~~~~~~~~---~~~i~~wd~~~~~~-----~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~ 613 (1130)
++.++.||...++ ...+.+||+.+... ...+.. .....-..++...++..++.||. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 6667777653222 36799999988772 222211 11111112233333667777764 34699
Q ss_pred EEeCCCCcee
Q 001184 614 FWDMDNVNML 623 (1130)
Q Consensus 614 vwd~~~~~~~ 623 (1130)
+||..+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999887654
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.48 E-value=4.7 Score=45.17 Aligned_cols=229 Identities=14% Similarity=0.137 Sum_probs=122.7
Q ss_pred cCCCEEEEEe--CCeEEEEECCCceeEEEEeCC-CCCeEEEEEe--CCCCcEEEEEeC-------CCcE---------EE
Q 001184 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP-PPASTFLAFH--PQDNNIIAIGME-------DSTI---------QI 901 (1130)
Q Consensus 843 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s--p~~~~~lasg~~-------dg~v---------~i 901 (1130)
-||++|..-. +..|-..++...++-+.+..+ ...+..++|. | +..+++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4889999887 577999999999888777643 4568888886 6 5666766654 2221 11
Q ss_pred E---EeecCeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEc----
Q 001184 902 Y---NVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFH---- 974 (1130)
Q Consensus 902 w---d~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---- 974 (1130)
| |..+-+...++.- .+..-.....++|++.++.+.+..--+. . .... . ...-..+.|.
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~----------l-~em~-~--~e~D~~~vfn~~~i 283 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFD----------L-GGMM-R--NERDWVVVFDIHAV 283 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSS----------H-HHHT-C--SSCEEEEEEEHHHH
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcC----------h-hhcC-c--ccccEEEEecHHHH
Confidence 1 1111111111110 1122234445666666666543211000 0 0000 0 0111112221
Q ss_pred ----CCCcEEEEEcCCcEEEEECCC----ceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCccccc
Q 001184 975 ----SDQVRLLVNHETQLAIYDGSK----MECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRC 1045 (1130)
Q Consensus 975 ----~d~~~l~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~-~Dg~i~vwd~~~~~~~~ 1045 (1130)
.+|++-.. .+..+.|.|.+. +..+..+.+. ......+.++|||+++++++ .+.++.|+|+++.....
T Consensus 284 e~~vk~G~~~~~-~g~gv~ViD~~~~~~~~~~~~~~iP~---pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~ 359 (638)
T 3sbq_A 284 EAAVKAGDFITL-GDSKTPVLDGRKKDGKDSKFTRYVPV---PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLF 359 (638)
T ss_dssp HHHHHTTCCBCC-TTCCCCEEECSCBTTBCCSSEEEEEE---SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred HHHHhcCCeEEE-CCCCeeEEccccccccCCceEEEEeC---CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhh
Confidence 23332211 111467777765 3333333232 34556789999999988877 58899999998643211
Q ss_pred c--c-CCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1046 R--I-APSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1046 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
. + .+...+... ..-...++..+|.+ +++-..|--.|..|.-|++..
T Consensus 360 ~~k~~~~~~~~~ae--~e~GlGPlHt~Fd~-~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 360 AGKLADPRDVIVGE--PELGLGPLHTTFDG-RGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp TTCCSCGGGGEEEC--CBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHH
T ss_pred hccccCcccceEee--ccCCCcccEEEECC-CCceEeeeeecceEEEEeccH
Confidence 1 0 000000000 01124577789988 466677777899999999974
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.45 E-value=9.3 Score=39.56 Aligned_cols=184 Identities=12% Similarity=0.042 Sum_probs=98.7
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEe
Q 001184 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK 914 (1130)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 914 (1130)
.|..++...+-..+ . .||.|..|-......+..-..-...|..++... ...+.-. ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~hs~~-l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLA-L-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEE-E-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEE-E-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 45556554433333 3 378888887654222111111124577777654 3444445 9999999765421111111
Q ss_pred cCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECC
Q 001184 915 GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1130)
Q Consensus 915 ~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 994 (1130)
.....|..++...+ +.+... ||.|..|-......... +.. ....+..++...+...++ .++.++.|-..
T Consensus 138 ~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~-p~~-----~~~~v~~i~~G~~hs~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 138 EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTV-PAE-----AQSGVDDVAGGIFHSLAL--KDGKVIAWGDN 206 (282)
T ss_dssp GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSC-CGG-----GGSSEEEEEECSSEEEEE--ETTEEEEEECC
T ss_pred cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCC-cee-----cCCCeEEEEecCCEEEEE--ECCeEEEEECC
Confidence 12345777776543 333334 79999998776433221 111 124577777666655544 68999999766
Q ss_pred CceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 995 KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
....+...... ...|..++-..+.. ++.. ||.|+.|-....
T Consensus 207 ~~gqlg~p~~~---~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 207 RYKQTTVPTEA---LSGVSAIASGEWYS-LALK--NGKVIAWGSSRT 247 (282)
T ss_dssp TTSTTCCCGGG---GSSCCEEEECSSCE-EEEE--TTEEEEESTTCC
T ss_pred CCCCCCCCccc---CCCceEEEcCCCEE-EEEE--CCEEEEecCCCC
Confidence 43322211111 34677777554433 3333 999999965543
No 353
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.35 E-value=6.8 Score=46.88 Aligned_cols=198 Identities=13% Similarity=0.164 Sum_probs=104.8
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCceeEEEE-e-----CCC--CCeEEEEEeCCCCcEEEEEeCCC------cEEEEE
Q 001184 843 KNDSYVMSAG-G----GKVSLFNMMNFKVMTTF-M-----SPP--PASTFLAFHPQDNNIIAIGMEDS------TIQIYN 903 (1130)
Q Consensus 843 ~dg~~la~~~-d----g~i~iwd~~~~~~~~~~-~-----~~~--~~i~~l~~sp~~~~~lasg~~dg------~v~iwd 903 (1130)
.++.+++.|+ + ..+.+||..+++-...- . ... .....+.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777776 2 35889998876544333 1 111 1123333332 466777887543 578899
Q ss_pred eecCeEEE--EEecCCCCeeEEEEccCCCeEEEEeCCC--cEEEEECCCCcccceeeE-eccCCCCCCCeEEEEEcCC-C
Q 001184 904 VRVDEVKT--KLKGHQKHITGLAFSTNLNILVSSGSDA--QLIFWNTDTWEKRKSIAI-QLPAGKLPVGETRVQFHSD-Q 977 (1130)
Q Consensus 904 ~~~~~~~~--~l~~h~~~V~~l~~s~dg~~L~s~s~Dg--~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~d-~ 977 (1130)
..+.+-.. .+...... .+++...+++.++.||.++ .+.+||..+.+....... ..+... .....+.+..+ +
T Consensus 475 ~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r--~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS--LVSAGLEFDPVSK 551 (695)
T ss_dssp TTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC--CBSCEEEEETTTT
T ss_pred CCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc--cceeEEEEeCCCC
Confidence 88754322 12111111 1233324788888888755 689999988543222110 011111 22233555555 5
Q ss_pred cEEEEE-c--C-----CcEEEEECCCcee-----eeeeecCCCCCCCeEEEEECCCCCEEEEEeCC--------CcEEEE
Q 001184 978 VRLLVN-H--E-----TQLAIYDGSKMEC-----IRQWVPQDVLSSPISSAAYSCNSQLIYATFTD--------GSIGVF 1036 (1130)
Q Consensus 978 ~~l~~~-~--d-----~~i~v~d~~~~~~-----~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~D--------g~i~vw 1036 (1130)
++++.+ . + +.+.+||+.+... ...+.........-.+++...++++++.|+.+ ..|.+|
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 555553 2 2 4588999987761 11111100001111233333447888888743 459999
Q ss_pred eCCCcccc
Q 001184 1037 DADSLRLR 1044 (1130)
Q Consensus 1037 d~~~~~~~ 1044 (1130)
|..+.+..
T Consensus 632 d~~t~~W~ 639 (695)
T 2zwa_A 632 DPLSETLT 639 (695)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 99988765
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.41 E-value=29 Score=41.22 Aligned_cols=243 Identities=9% Similarity=0.013 Sum_probs=117.9
Q ss_pred EEEE-EcCCCCEEEEE-e----CCCeEEEEEecCCccceeeeeeecCCC------CeeEEEEecCCCceEEEEE------
Q 001184 413 SRVA-WSPDGNFIGVA-F----TKHLIHLYTYQGSNDLCQSLEIDAHVG------GVNDLAFSYPNKQLCIVTC------ 474 (1130)
Q Consensus 413 ~~v~-~spdg~~las~-~----~d~~i~vwd~~~~~~~~~~~~~~~h~~------~V~~i~~s~d~~~l~l~s~------ 474 (1130)
..+. ++||+++++.+ | ....++++|+.+++.+..... ..-+. ....++|..++. ++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~ 208 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNE 208 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCE--EEEEeCCCCCC
Confidence 3444 88999988765 2 224799999999875532111 00000 124458874444 44432
Q ss_pred ----cCCCcEEEEe-cCC--CeeeEecCCCcCE-EEEeecccCCcc---EEEEEecC---CcEEEEEccCCcc-eeeecC
Q 001184 475 ----GDDKLIRVWD-LSG--RKLFQFEGHEAPV-YSVCPHQKENIH---FIFSTAVD---GKIKAWLYDNVGS-RVDYDA 539 (1130)
Q Consensus 475 ----s~d~~v~iwd-~~~--~~~~~~~~h~~~v-~~~~~~~~~~~~---~l~s~s~d---g~i~vwd~~~~~~-~~~~~~ 539 (1130)
+....|+.|. -+. +-...+.+....+ .+.....++... .+++.+.+ ..+.+.+.+.... ...+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 1224577776 221 1223344433333 222233333322 34544423 2344445443222 233333
Q ss_pred CCccEEEEEEecCCCeEEEeeec------CCCCcEEEEeeCCCCc-------eeEE-EecccCceeEEEEEcCCCCEEEE
Q 001184 540 PGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNESEGA-------LKRT-YIGFRKKSAGVVQFDTTRNRILA 605 (1130)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~~-------~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 605 (1130)
.... .+....++.+++....+ .-..+.|...|+.++. ..+. +.......+..+.+..+ ..+++
T Consensus 289 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 3221 12344566555533211 0036778888887642 2233 44434446677888765 56677
Q ss_pred EeCCCc--EEEEeCCCCc-eeEE-EeccCCCCCcceEEEcCCCC-EEEEEeC---CCcEEEEEcC
Q 001184 606 AGEDNQ--IKFWDMDNVN-MLTS-TEAEGGLPSLPRLRFNKEGN-LLVVTTA---DQGIKILANA 662 (1130)
Q Consensus 606 ~~~dg~--i~vwd~~~~~-~~~~-~~~~~~~~~i~~v~~s~~~~-~l~~~~~---dg~i~iw~~~ 662 (1130)
...++. |+++++.+++ .... +.... ...+.....++++. ++++.+. -+.+..++..
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 777764 6777776664 2233 33332 12455555566654 3333332 2455555544
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=87.25 E-value=12 Score=40.26 Aligned_cols=153 Identities=9% Similarity=0.034 Sum_probs=86.0
Q ss_pred cEEEEECCCC--cccceeeEeccCCCCCCCeEEEEEc---CC----CcEEEEE--cCCcEEEEECCCceeeeeeecCCCC
Q 001184 940 QLIFWNTDTW--EKRKSIAIQLPAGKLPVGETRVQFH---SD----QVRLLVN--HETQLAIYDGSKMECIRQWVPQDVL 1008 (1130)
Q Consensus 940 ~i~vwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s---~d----~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~ 1008 (1130)
.|.+||+.++ +..+...+.............+.+. |+ +.++..+ ....|.|||+.+++..+........
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667777776 5554444332222233566777777 22 4455553 4678999999999887765211000
Q ss_pred ---------------CCCeEEEEECCC----CCEEEEEeCCCcEEEEeCCCcccccccCCCcccccCCCCCceeeeEEEE
Q 001184 1009 ---------------SSPISSAAYSCN----SQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSQTVFPLVVT 1069 (1130)
Q Consensus 1009 ---------------~~~v~~v~~s~d----g~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1130)
...|..|++||+ ++.|.-....+ -++|.+.+.-+...-........+. -+.....+..+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEE
Confidence 247899999998 77777766543 3555554332211100111111110 01011223455
Q ss_pred EcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1070 SHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1070 ~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
..+.++.++++--....|..|+..+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCC
Confidence 5544677888888889999999875
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.42 E-value=46 Score=37.13 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=34.7
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCccceeeeee-----e----cCCCCeeEEEEecC
Q 001184 411 SVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEI-----D----AHVGGVNDLAFSYP 465 (1130)
Q Consensus 411 ~V~~v~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~-----~----~h~~~V~~i~~s~d 465 (1130)
....|+|.|||. .|+++...|.|++++............+ . +.......|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 467899999996 4555677899999975432111111111 1 11456789999997
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.20 E-value=22 Score=44.01 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=35.3
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCC
Q 001184 1010 SPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1130)
Q Consensus 1010 ~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~ 1050 (1130)
..+.+++..++..++++-+.|+++|||++.+++++...+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 46778888889999999999999999999999988776543
No 358
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=84.91 E-value=1.6 Score=40.38 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=47.8
Q ss_pred ccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccccC
Q 001184 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY 133 (1130)
Q Consensus 67 ~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ 133 (1130)
++.. ++|.|+-+.||||+..|...+|..++++--.-+.....+.+++|+.+.......+++....+
T Consensus 48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~f 113 (156)
T 2nxp_A 48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF 113 (156)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGG
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHH
Confidence 3444 89999999999999999999999999865444443456788888776665555444444433
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=84.30 E-value=51 Score=35.82 Aligned_cols=262 Identities=11% Similarity=0.013 Sum_probs=118.3
Q ss_pred CCceeEEEEec--CCCEEEEEeCC----eEEEEECCCceeEEEEeC--------------CCCCeEEEEEeCCC-CcEEE
Q 001184 833 EDVVPCVALSK--NDSYVMSAGGG----KVSLFNMMNFKVMTTFMS--------------PPPASTFLAFHPQD-NNIIA 891 (1130)
Q Consensus 833 ~~~i~~l~~s~--dg~~la~~~dg----~i~iwd~~~~~~~~~~~~--------------~~~~i~~l~~sp~~-~~~la 891 (1130)
...|.++++.| ++.+.+.+..| .|...+ ..++.-..+.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 66666665555 444432 22222111110 11247788998733 34455
Q ss_pred EEeCCCcEEEEEeecCeEEEEEec-------------------CCCCeeEEEEccC-CCeEEEEeCCCcEEEEECCCCcc
Q 001184 892 IGMEDSTIQIYNVRVDEVKTKLKG-------------------HQKHITGLAFSTN-LNILVSSGSDAQLIFWNTDTWEK 951 (1130)
Q Consensus 892 sg~~dg~v~iwd~~~~~~~~~l~~-------------------h~~~V~~l~~s~d-g~~L~s~s~Dg~i~vwd~~~~~~ 951 (1130)
++...+.|...+ +.++.-..+.. ....|.+|.+.|. ...|..+..++.|...+ +.++.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 555555544332 12222122211 1235788999873 44555555444443332 21111
Q ss_pred cceeeEeccCCC-------CCCCeEEEEEcCC-CcEEEEEcCCcEEEEECCCceeeeeeecCCCC--CCCeEEEEECC-C
Q 001184 952 RKSIAIQLPAGK-------LPVGETRVQFHSD-QVRLLVNHETQLAIYDGSKMECIRQWVPQDVL--SSPISSAAYSC-N 1020 (1130)
Q Consensus 952 ~~~~~~~~~~~~-------~~~~v~~~~~s~d-~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~--~~~v~~v~~s~-d 1020 (1130)
-........... ....+..+++.|+ ...+.++..+.|...+-. ++....+...... ...+.+++++| +
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECCCC
Confidence 000000000000 0134788999886 345555555555555432 3333222211100 13456788876 3
Q ss_pred CCEEEEEeC-----------CCcEEEEeCCC-cccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEE
Q 001184 1021 SQLIYATFT-----------DGSIGVFDADS-LRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVK 1088 (1130)
Q Consensus 1021 g~~l~t~~~-----------Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~ 1088 (1130)
...|.++.. ++...||.... |+.-..+.. -++....- .......++++|.++..|..++.++.
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~--glp~~~~~-~~~~~~~~~~~p~~~~~l~~g~~~g~-- 364 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR--GLPTDQAW-LTVKRQAMTADAHAPVGVYFGTTGGE-- 364 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB--TSCCSSCC-CCCCTBSEEECCSSSCCEEEECTTSC--
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC--CCCCcccc-ceEEEEEEEECCCCCCEEEEEeCCCe--
Confidence 334444432 33345554443 333322221 01110000 00111236677766666777766654
Q ss_pred EEeCCCCccCCcccc
Q 001184 1089 VIEPSETERKWGVAV 1103 (1130)
Q Consensus 1089 vW~~~~~~~~w~~~~ 1103 (1130)
||.-..+...|....
T Consensus 365 l~~S~D~G~tW~~~~ 379 (394)
T 3b7f_A 365 IWASADEGEHWQCIA 379 (394)
T ss_dssp EEEESSTTSBCEEEE
T ss_pred EEEECCCCCCceEcc
Confidence 555566666686543
No 360
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=83.81 E-value=51 Score=35.43 Aligned_cols=172 Identities=10% Similarity=0.137 Sum_probs=97.6
Q ss_pred eEEEEECCCc--eeEEEEeCC------CCCeEEEEEe---CC---CCcEEEEEe-CCCcEEEEEeecCeEEEEEe-----
Q 001184 855 KVSLFNMMNF--KVMTTFMSP------PPASTFLAFH---PQ---DNNIIAIGM-EDSTIQIYNVRVDEVKTKLK----- 914 (1130)
Q Consensus 855 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---p~---~~~~lasg~-~dg~v~iwd~~~~~~~~~l~----- 914 (1130)
+|.+||+.+. +.++++.-. ......+++. |. ++.++..++ ..+.|.|||+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 888877632 2346778877 21 134554444 45679999999887655441
Q ss_pred ---------cC----CCCeeEEEEccC----CCeEEEEeCCCcEEEEECCCCcccce---eeEe-ccCCCCCCCeEEEEE
Q 001184 915 ---------GH----QKHITGLAFSTN----LNILVSSGSDAQLIFWNTDTWEKRKS---IAIQ-LPAGKLPVGETRVQF 973 (1130)
Q Consensus 915 ---------~h----~~~V~~l~~s~d----g~~L~s~s~Dg~i~vwd~~~~~~~~~---~~~~-~~~~~~~~~v~~~~~ 973 (1130)
|. ...|..|++||+ +++|.-....+ -++|.+.+.-.... ...+ .............++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 11 246888999998 77887776655 35555543111100 0000 000000123345667
Q ss_pred c-CCCcEEEE-EcCCcEEEEECCC-c---eeeeeeecCCCCCCCeEEEEECCCCCEEEEEe
Q 001184 974 H-SDQVRLLV-NHETQLAIYDGSK-M---ECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 974 s-~d~~~l~~-~~d~~i~v~d~~~-~---~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
. .+|.+.++ -..+.|..|+..+ . +....+.... .-.....+.+.++|.+.+++.
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEEC
Confidence 5 56765555 4678899999875 1 1122222221 134567777777776555554
No 361
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=82.15 E-value=0.96 Score=40.70 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=42.2
Q ss_pred ccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccc
Q 001184 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFR 125 (1130)
Q Consensus 67 ~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 125 (1130)
++.. ++|.|+-+.||||+..|..++|..++.+--.-+... .+.+++|..+.......
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~ 85 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIH 85 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHh
Confidence 4444 899999999999999999999999998654444444 67777777665554443
No 362
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=79.87 E-value=81 Score=35.10 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=60.5
Q ss_pred CCEEEEEEecCCC-eEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeec----CCCccEEEEEEcCC--
Q 001184 348 SSVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK----DSSISVSRVAWSPD-- 420 (1130)
Q Consensus 348 ~~V~~v~fspdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~V~~v~~spd-- 420 (1130)
...+.++|.|||+ ++++ +...|.|++++..... ... .+ -++.. .+.. +.......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~~-~~~-~~--~~~~~-------~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFI-LEKEGYVKILTPEGEI-FKE-PY--LDIHK-------LVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp SSEEEEECCSSSSCCEEE-EETTTEEEEECTTSCB-CSS-CS--EECTT-------TBCCCCSSSCCCSEEEEEECTTHH
T ss_pred CCceEEEECCCCCeEEEE-EeCCceEEEEeCCCCe-eee-ee--cCCcc-------eeccCccccCCCcceeeEeCCCCc
Confidence 4678999999995 5455 4678999999754321 110 10 01100 0111 22567889999997
Q ss_pred --CCEEEEEeC--C----------CeEEEEEecCC--c-----cceeeeeee--cCCCCeeEEEEecCCCceEEEEEc
Q 001184 421 --GNFIGVAFT--K----------HLIHLYTYQGS--N-----DLCQSLEID--AHVGGVNDLAFSYPNKQLCIVTCG 475 (1130)
Q Consensus 421 --g~~las~~~--d----------~~i~vwd~~~~--~-----~~~~~~~~~--~h~~~V~~i~~s~d~~~l~l~s~s 475 (1130)
+.+.++-+. + ..|.-|.+..+ . ..+.+..+. ........|+|.|||. +.++.+
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~--LYv~~G 157 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF--LYIILG 157 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC--EEEEEC
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc--EEEEeC
Confidence 443333322 1 13445666432 1 111122221 1122468999999997 444444
No 363
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=79.49 E-value=1 Score=41.02 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=35.6
Q ss_pred ccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhc
Q 001184 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120 (1130)
Q Consensus 67 ~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~ 120 (1130)
++.. ++|.|+-|.||||+..| .++|..|+.+--.-+.....+.+++|..+..
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~ 82 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNS 82 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCS
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCC
Confidence 4444 99999999999999999 9999999985433332222344444444433
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=74.53 E-value=89 Score=32.80 Aligned_cols=210 Identities=9% Similarity=0.050 Sum_probs=114.1
Q ss_pred ccceEEEEEeccCCeEEEeeeCCeEEe---eecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec
Q 001184 767 ASKVARLLYTNSGIGILALWSNGVQKL---WKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1130)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~i---w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1130)
...+..+........++..++.|.+.. |++........ |..+...+.-.....|.++..-+
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~----------------G~~i~~~l~l~~~e~i~~~~~~~ 104 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR----------------GQHVANLLAFQPEERIAQVIQIR 104 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC----------------CEEHHHHTTCCTTCCEEEEEEES
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC----------------CEEHHHccCCCCCCEEEEEEEec
Confidence 344555555566666777777776543 33332221111 22211111112344555554333
Q ss_pred ---CCCEEEEEe-CCeEEEEECCCceeE-------EEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEee--c----
Q 001184 844 ---NDSYVMSAG-GGKVSLFNMMNFKVM-------TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR--V---- 906 (1130)
Q Consensus 844 ---dg~~la~~~-dg~i~iwd~~~~~~~-------~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~--~---- 906 (1130)
+..+++..+ +|.++-..+...... ..+.. .+.+..+.... +...|+..+..|.+..+... .
T Consensus 105 ~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~ 182 (327)
T 3uc1_A 105 GYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPM 182 (327)
T ss_dssp STTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCC
T ss_pred cCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcC
Confidence 466777776 899998876553321 12222 34565555555 45567778889998888776 2
Q ss_pred -----CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccce--e-eEeccCCCCCCCeEEEE-EcCCC
Q 001184 907 -----DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS--I-AIQLPAGKLPVGETRVQ-FHSDQ 977 (1130)
Q Consensus 907 -----~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~--~-~~~~~~~~~~~~v~~~~-~s~d~ 977 (1130)
|.....+. ....|.++...+++..|+.++..|.++.-.+........ . ............+..+. ...+.
T Consensus 183 gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~ 261 (327)
T 3uc1_A 183 GRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDS 261 (327)
T ss_dssp CTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTC
T ss_pred CcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCc
Confidence 11111232 345677777777778999999999999888765432211 1 11111111113344333 34455
Q ss_pred cEEEEEcCCcEEEEECCC
Q 001184 978 VRLLVNHETQLAIYDGSK 995 (1130)
Q Consensus 978 ~~l~~~~d~~i~v~d~~~ 995 (1130)
..++++.++.+.-++...
T Consensus 262 ~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 262 ELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEEGGGCEEEEEGGG
T ss_pred cEEEEcCCCeEEEEehhh
Confidence 566667777777777653
No 365
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=73.56 E-value=1.1e+02 Score=33.21 Aligned_cols=236 Identities=6% Similarity=0.006 Sum_probs=107.5
Q ss_pred CccEEEEEEcC--CCCEEEEEeCCC----eEEEEEecCCccceeeee---eec--------CCCCeeEEEEecC--CCce
Q 001184 409 SISVSRVAWSP--DGNFIGVAFTKH----LIHLYTYQGSNDLCQSLE---IDA--------HVGGVNDLAFSYP--NKQL 469 (1130)
Q Consensus 409 ~~~V~~v~~sp--dg~~las~~~d~----~i~vwd~~~~~~~~~~~~---~~~--------h~~~V~~i~~s~d--~~~l 469 (1130)
...|.+|++.| ++...|.+ ..| .|... ...|+....... +.. +...|.++++.|. ..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-- 129 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG-- 129 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--
Confidence 35699999999 45555444 333 33322 233333222111 111 1125788999873 33
Q ss_pred EEEEEcCCCcEEEEecCCCeeeEecC-------------------CCcCEEEEeecccCCccEEEEEecCCcEEEEEccC
Q 001184 470 CIVTCGDDKLIRVWDLSGRKLFQFEG-------------------HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN 530 (1130)
Q Consensus 470 ~l~s~s~d~~v~iwd~~~~~~~~~~~-------------------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 530 (1130)
.+..+...+.|...+..|+.-..+.. ....+.++.+.+...+ .++.+..++.|.. ...
T Consensus 130 ~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~-~l~vg~~~ggl~~--s~D 206 (394)
T 3b7f_A 130 TWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK-HLYIGMSSGGVFE--STD 206 (394)
T ss_dssp CEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT-CEEEEEETBEEEE--ESS
T ss_pred EEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC-EEEEEECCCCEEE--ECC
Confidence 34444455555555433433222211 1235778888764333 3444444444333 222
Q ss_pred Ccceee-ecC--C-----------CccEEEEEEecC-CCeEEEeeecCCCCcEEEEeeCCCCceeEEEec-ccC---cee
Q 001184 531 VGSRVD-YDA--P-----------GLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG-FRK---KSA 591 (1130)
Q Consensus 531 ~~~~~~-~~~--~-----------~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~---~~v 591 (1130)
...... +.. . ...+.++.+.|. ...+.++. .+.|+..+- .++....+.. ... ..+
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-----~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~ 280 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-----HCGIYRMDR-REGVWKRIGDAMPREVGDIG 280 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-----TTEEEEEET-TTTEEECGGGGSCTTTCSCE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-----CCeEEEeCC-CCCcceECCCCCCCCCccce
Confidence 222221 110 0 134889999986 34555554 334555442 2332222211 111 134
Q ss_pred EEEEEcCC-CCEEEEEeC-----------CCcEEEEeCCC-CceeEEEec--cCCC--C--CcceEEEcCC-CCEEEEEe
Q 001184 592 GVVQFDTT-RNRILAAGE-----------DNQIKFWDMDN-VNMLTSTEA--EGGL--P--SLPRLRFNKE-GNLLVVTT 651 (1130)
Q Consensus 592 ~~~~~~~~-~~~l~~~~~-----------dg~i~vwd~~~-~~~~~~~~~--~~~~--~--~i~~v~~s~~-~~~l~~~~ 651 (1130)
..+.++|. ...++++.. ++...+|.... |+....+.. .... . ....++++|. ...|+.++
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~ 360 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGT 360 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEEC
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEe
Confidence 56777763 344555432 23344554443 444443321 1100 0 1236888874 34466666
Q ss_pred CCCcEE
Q 001184 652 ADQGIK 657 (1130)
Q Consensus 652 ~dg~i~ 657 (1130)
.++.|.
T Consensus 361 ~~g~l~ 366 (394)
T 3b7f_A 361 TGGEIW 366 (394)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 555543
No 366
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.02 E-value=11 Score=48.15 Aligned_cols=42 Identities=17% Similarity=0.102 Sum_probs=34.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCCc
Q 001184 1010 SPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1130)
Q Consensus 1010 ~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~~ 1051 (1130)
..+.+++..++..++++-+.|+++|||++.+++++.......
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~ 279 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 279 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhh
Confidence 345566777889999999999999999999999887765443
No 367
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.48 E-value=51 Score=40.80 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=32.3
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceee
Q 001184 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956 (1130)
Q Consensus 919 ~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~ 956 (1130)
.+.+++..++..++++.+.|+++|+|++.++++.....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46778888888999999999999999999988765543
No 368
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=64.74 E-value=1.3e+02 Score=30.69 Aligned_cols=196 Identities=9% Similarity=0.024 Sum_probs=102.4
Q ss_pred EEEEEeCCCcEEE---EEeecCeEEEEEecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCC
Q 001184 889 IIAIGMEDSTIQI---YNVRVDEVKTKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKL 964 (1130)
Q Consensus 889 ~lasg~~dg~v~i---wd~~~~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 964 (1130)
.|+.-+.+|.++- |++..++....+. ....|.++.... +..+++.++.+|.++-..+.... ....-.....-..
T Consensus 37 ~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lke 114 (276)
T 3no0_A 37 GLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLTE 114 (276)
T ss_dssp CEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCCT
T ss_pred EEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecCC
Confidence 4444556666553 3333221111132 345566665422 56799999999999999887643 1111111111112
Q ss_pred CCCeEEEEEcCC-CcEEEEEcCCcEEEEECCCcee-------eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 001184 965 PVGETRVQFHSD-QVRLLVNHETQLAIYDGSKMEC-------IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVF 1036 (1130)
Q Consensus 965 ~~~v~~~~~s~d-~~~l~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vw 1036 (1130)
.+.+..+..... ...++.+..|.+..++...-.. +..+... ....|.++...+++..++..+..|.++..
T Consensus 115 gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~--~~d~vv~~~~~~~~~~ll~~T~~G~~kr~ 192 (276)
T 3no0_A 115 GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE--KNDETSGLRIWNGEPYLLVITAKGRVKKI 192 (276)
T ss_dssp TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEEEESSCSEEEEEETTSCEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC--CCCEEEEEEEeCCCCEEEEEeCCCcEEEe
Confidence 245555554443 3455568888888776542111 1111111 13567777666677788889999999999
Q ss_pred eCCCcccccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEE--EeCCC
Q 001184 1037 DADSLRLRCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV--IEPSE 1094 (1130)
Q Consensus 1037 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~v--W~~~~ 1094 (1130)
.+.......+-.... ... ..+..+. .+.... +...++..+.+|.+.. +++++
T Consensus 193 ~~~e~~~~~R~gkGv-~~i--~~~~~lv--~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 193 SHEEIPKTNRGVKGT-EVS--GTKDTLV--DLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EGGGSCCCCTTCCCE-ECC--CSSSCEE--EEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred EHHHcccCCCCCcce-EEE--cCCCcEE--EEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 876544332211000 000 1122222 221112 3346777778888877 77653
No 369
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=64.25 E-value=1.9e+02 Score=32.58 Aligned_cols=179 Identities=11% Similarity=0.049 Sum_probs=91.0
Q ss_pred CCCCeeEEEEecCCCceEEEEEcCCCc----------------------------EEEEe-cCCCeeeEecCC--CcC--
Q 001184 453 HVGGVNDLAFSYPNKQLCIVTCGDDKL----------------------------IRVWD-LSGRKLFQFEGH--EAP-- 499 (1130)
Q Consensus 453 h~~~V~~i~~s~d~~~l~l~s~s~d~~----------------------------v~iwd-~~~~~~~~~~~h--~~~-- 499 (1130)
|...+....|.-||+. -++....+++ +.++| .+|+.+.+..-. .+.
T Consensus 177 ~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~ 255 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVS 255 (591)
T ss_dssp TSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGG
T ss_pred ccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccc
Confidence 5555666677777765 4555544444 78889 788888765421 111
Q ss_pred -------------EEEEeecccCCccEEEEEe---cCCcEEEEEccCCcce--eeecCC-----------CccEEEEEEe
Q 001184 500 -------------VYSVCPHQKENIHFIFSTA---VDGKIKAWLYDNVGSR--VDYDAP-----------GLWCTTMLYS 550 (1130)
Q Consensus 500 -------------v~~~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~--~~~~~~-----------~~~v~~~~~s 550 (1130)
..++++. +.+...++.+- ....+..||.+..+.. ..+... .+.+....+.
T Consensus 256 ~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVD 334 (591)
T 2zux_A 256 DWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVD 334 (591)
T ss_dssp GGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCS
T ss_pred ccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCC
Confidence 2233321 12222333332 1124777777665432 222221 1234444555
Q ss_pred cCCCe-EEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCC--CEEEEEeCCC----cEEEEeCCCCcee
Q 001184 551 ADGSR-LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR--NRILAAGEDN----QIKFWDMDNVNML 623 (1130)
Q Consensus 551 ~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg----~i~vwd~~~~~~~ 623 (1130)
-||+- |+.++. ++| ..|+.+......|...+....|.|+. -.++.+.+++ -..+.|..+|+.+
T Consensus 335 gDG~dEIv~Gs~---------~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 335 GDGKDEIIFGSM---------AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp SSSSCEEEETTE---------EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred CCCCceEEEeee---------EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 56553 333322 223 23444433332334466777788874 3566665542 4556899999998
Q ss_pred EEEeccCCCCCcceEEEcCC
Q 001184 624 TSTEAEGGLPSLPRLRFNKE 643 (1130)
Q Consensus 624 ~~~~~~~~~~~i~~v~~s~~ 643 (1130)
................|.|+
T Consensus 405 w~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 405 WGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp EEECCSSCCCCEEEECCCTT
T ss_pred EEcCCCCCCCceeEEecCCC
Confidence 87765433333333334443
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=60.78 E-value=1.6e+02 Score=30.56 Aligned_cols=250 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCCCcccccccCCCccceeeccccCCcceeEEEecCCCCCccceEEEEEeccCCeEEEeeeCCe---EEeeecCCCCCCC
Q 001184 727 GIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGV---QKLWKWNRTEQNP 803 (1130)
Q Consensus 727 ~~~~~~~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~---i~iw~~~~~~~~~ 803 (1130)
++...+++.+.+|.++.-.+...........-...........+..+........++..++.|. +.++++.......
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Q ss_pred CcccccccccccccCCCCcceeccCCCCCCCceeEEEEec---CCCEEEEEe-CCeEEEEEC-------CCceeEEEEeC
Q 001184 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK---NDSYVMSAG-GGKVSLFNM-------MNFKVMTTFMS 872 (1130)
Q Consensus 804 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~---dg~~la~~~-dg~i~iwd~-------~~~~~~~~~~~ 872 (1130)
.|...... +.-.....|.++..-+ +..+++..+ .|.++...+ ..|.....+..
T Consensus 86 ~G~~i~~~----------------l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~ 149 (312)
T 1suu_A 86 KGQNISEL----------------INLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND 149 (312)
T ss_dssp --CBGGGT----------------SCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT
T ss_pred CCcChhhc----------------cCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec---------CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 001184 873 PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV---------DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIF 943 (1130)
Q Consensus 873 ~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~---------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~v 943 (1130)
.+.+..+.... +...++..+.+|.+..+.... |.....+.. .+.|.++....++..+++.+..|..+.
T Consensus 150 -~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr 226 (312)
T 1suu_A 150 -KDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKR 226 (312)
T ss_dssp -TCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEE
T ss_pred -CCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEE
Q ss_pred EEC----CCCcccceeeEeccC-CCCCCCeEEEEEcCCCcEEEEEcCCcEEEEECCC
Q 001184 944 WNT----DTWEKRKSIAIQLPA-GKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSK 995 (1130)
Q Consensus 944 wd~----~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~ 995 (1130)
..+ ..++........... .....-+....+.++...++.+..+.+.-....+
T Consensus 227 ~~~~e~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 227 LNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp EEGGGSCBCCTTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred EEHHHhcccCCCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
No 371
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=60.49 E-value=1.9e+02 Score=31.19 Aligned_cols=208 Identities=8% Similarity=0.021 Sum_probs=105.6
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC-----------eEEEEEecC-CCCeeEEEEccCCCeEEEEeCCCcEEE
Q 001184 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-----------EVKTKLKGH-QKHITGLAFSTNLNILVSSGSDAQLIF 943 (1130)
Q Consensus 876 ~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-----------~~~~~l~~h-~~~V~~l~~s~dg~~L~s~s~Dg~i~v 943 (1130)
.+..++++. +....+.-..||.|+.|-.... .....+..- ...|..++.. ..+.+....||.|+.
T Consensus 106 ~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred ceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 456677777 6667777788999999965321 111122221 1256666664 446666778999999
Q ss_pred EECCCCccc------c-eeeEeccCCCCCCCeEEEEEcC-CCcEEEEEcCCcEEEEECCCcee----------e-eeeec
Q 001184 944 WNTDTWEKR------K-SIAIQLPAGKLPVGETRVQFHS-DQVRLLVNHETQLAIYDGSKMEC----------I-RQWVP 1004 (1130)
Q Consensus 944 wd~~~~~~~------~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~d~~i~v~d~~~~~~----------~-~~~~~ 1004 (1130)
|-.....+. . ..+.... ......+..++... +...++...++.++.|-...... . ..+..
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~-~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 261 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVE-ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS 261 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECG-GGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGG
T ss_pred eCCCCCCCcCCCCCcccccceEec-ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecc
Confidence 986542211 0 1111111 11124566666654 34556668899999997542111 1 11111
Q ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccc-cccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeC
Q 001184 1005 QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLR-CRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLT 1083 (1130)
Q Consensus 1005 ~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 1083 (1130)
.. ...|..++.. ..+.++-..||.|+.|-....-.+ ..-......|.....-....++.++- .....+.-..
T Consensus 262 ~~--~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~---G~~h~~al~~ 334 (389)
T 3kci_A 262 LT--GLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT---GSLHCVCCTE 334 (389)
T ss_dssp GT--TSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEET
T ss_pred cC--CCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe---ccCeEEEECC
Confidence 10 2246555543 334445567999999965432111 10000000010000000112333332 2344555678
Q ss_pred CCcEEEEeCCC
Q 001184 1084 DGSVKVIEPSE 1094 (1130)
Q Consensus 1084 Dg~v~vW~~~~ 1094 (1130)
||.|..|-..+
T Consensus 335 ~G~v~~wG~n~ 345 (389)
T 3kci_A 335 DGEVYTWGDND 345 (389)
T ss_dssp TCCEEEEECCT
T ss_pred CCCEEEeeCCC
Confidence 99999998754
No 372
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=57.58 E-value=33 Score=38.87 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=44.8
Q ss_pred CCeEEEEEcCCCcEEEEEcC-------------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe
Q 001184 966 VGETRVQFHSDQVRLLVNHE-------------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 966 ~~v~~~~~s~d~~~l~~~~d-------------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
.....|.|+++|.+.++.+. ..+..++..+++....+.... ...++.++||||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEEE
Confidence 55678999999988774321 257777777787766554332 35789999999999888876
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=57.56 E-value=1.8e+02 Score=30.10 Aligned_cols=191 Identities=10% Similarity=0.075 Sum_probs=93.1
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCccce------eeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe----c---
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDLC------QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD----L--- 485 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~------~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd----~--- 485 (1130)
|+..++++.+.+|.|+--.+..-+..+ ....+..+ +.+..+....... .++..+..|.++-.. .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 455678888999998876654321110 00011222 2333333333333 344444455544333 1
Q ss_pred ---CCCeee---EecCCCcCEEEEeecc-cCCccEEEEEecCCcEEEEEccCCcc-----e--eeecCCCccEEEEEEec
Q 001184 486 ---SGRKLF---QFEGHEAPVYSVCPHQ-KENIHFIFSTAVDGKIKAWLYDNVGS-----R--VDYDAPGLWCTTMLYSA 551 (1130)
Q Consensus 486 ---~~~~~~---~~~~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~vwd~~~~~~-----~--~~~~~~~~~v~~~~~s~ 551 (1130)
.|..+. .+. ....|.++.... ..+..+++..+.+|.++.-.+..... . ..+... ..+..+....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 122211 122 334565554322 13446789999999999987653211 1 122223 4455554544
Q ss_pred CCCeEEEeeecCCCCcEEEEeeCCCC----c---eeEEEecccCceeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001184 552 DGSRLFSCGTSKEGDSHLVEWNESEG----A---LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1130)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~~----~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 618 (1130)
+...++..+. .|.+..++...- + -++.+.-..+..+..+....++..+++.+..|.++-.++.
T Consensus 156 ~~~~i~l~T~----~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 156 GEDEVMLFSA----EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCCEEEEECC----CCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 4455555553 677777665321 1 1111111122244445444455678888999998888763
No 374
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=57.11 E-value=12 Score=33.06 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=49.9
Q ss_pred cchHHHHHHHHHhhhhccHH-HHHHHHHHhcCCCccHHHHHHHHhccCHHHHHHHhccCCCc--CCCccchhhhHHHHH-
Q 001184 3 SLSRELVFLILQFLDEEKFK-ESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGFTKV--DDNRYSMKIFFEIRK- 78 (1130)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~-~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~--~~~~~~~~~~~~i~~- 78 (1130)
-...++...|+..|.+.||- .+...+.++.|+..+ ++..|++.++.+.+. -...+..-++.-+.+
T Consensus 19 ~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~~ 87 (130)
T 2k9m_A 19 GKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEI 87 (130)
T ss_dssp SHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhcC
Confidence 34567889999999999984 456666666665433 245566666666222 111222211111111
Q ss_pred --------hHHHH-HHhcCCH-HHHHHHHHhhcccc
Q 001184 79 --------QKYLE-ALDRHDR-AKAVEILVKDLKVF 104 (1130)
Q Consensus 79 --------~~~le-ll~~~~~-~~a~~~l~~~~~~~ 104 (1130)
..+|| +|..+++ .+|+.++| .|.|.
T Consensus 88 ~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir-~L~P~ 122 (130)
T 2k9m_A 88 YPEEEEILKKALRDLKRGKKLKPEIKGKLS-RLRLF 122 (130)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCHHHHHHHH-TCCSC
T ss_pred chhHHHHHHHhHHHHHHcCCHHHHHHHHHH-cCCCC
Confidence 14567 7777764 44666665 55554
No 375
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=56.87 E-value=2.1e+02 Score=30.72 Aligned_cols=243 Identities=10% Similarity=0.090 Sum_probs=119.9
Q ss_pred ccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCEEEE-EeCCe
Q 001184 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMS-AGGGK 855 (1130)
Q Consensus 777 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~-~~dg~ 855 (1130)
......++...+|.+..|-.....+.-.+.......+.. +.......+..++++......+. ..+|.
T Consensus 60 ~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~------------v~~~~~~~~~~v~i~~G~~h~~al~~~G~ 127 (389)
T 3kci_A 60 GGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTL------------LESIQHVFIKKVAVNSGGKHCLALSSEGE 127 (389)
T ss_dssp EETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEE------------CGGGTTSCEEEEEECTTCSEEEEEETTSC
T ss_pred eCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEE------------cccccCCceeEEEECcCCCeEEEEcCCCC
Confidence 345556677788888888654432221111110000000 00011233444555555444433 34788
Q ss_pred EEEEECCCc-----------eeEEEEeC-CCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec-C---------eE-EEE
Q 001184 856 VSLFNMMNF-----------KVMTTFMS-PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-D---------EV-KTK 912 (1130)
Q Consensus 856 i~iwd~~~~-----------~~~~~~~~-~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~---------~~-~~~ 912 (1130)
|+.|-.... .....+.. ....|..++. +....+.-..||.|+.|=... + .. ...
T Consensus 128 v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~ 204 (389)
T 3kci_A 128 VYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKL 204 (389)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE
T ss_pred EEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceE
Confidence 888854321 11111211 1224655555 445666677899999996532 1 11 111
Q ss_pred Eec-CCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccc-------eeeEeccCCCCCCCeEEEEEcCCCcEEEEEc
Q 001184 913 LKG-HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK-------SIAIQLPAGKLPVGETRVQFHSDQVRLLVNH 984 (1130)
Q Consensus 913 l~~-h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 984 (1130)
+.. ....|..++......+.+....||.|..|-.....+.. ..+...... ....+..++.... ..++...
T Consensus 205 v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~-~~~~v~~v~~G~~-hs~alt~ 282 (389)
T 3kci_A 205 VEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL-TGLGVVKVECGSQ-FSVALTK 282 (389)
T ss_dssp CGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG-TTSCEEEEEEETT-EEEEEET
T ss_pred ecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc-CCCcEEEEeCCCC-EEEEEeC
Confidence 111 22357777765434567777889999999865422211 111111111 1123555554333 2344467
Q ss_pred CCcEEEEECCCcee-----------eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 985 ETQLAIYDGSKMEC-----------IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 985 d~~i~v~d~~~~~~-----------~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
++.++.|-...... ...+... ....|..++-. ..+.++...||.|+.|-...
T Consensus 283 ~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l--~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 283 SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL--QGKKVIAIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp TSCEEEEECCGGGTTCSSSCCCEEEEEECGGG--TTCCEEEEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred CCeEEEEeCCCCCCCCCCCCccccCCeEeccC--CCCCEEEEEec--cCeEEEECCCCCEEEeeCCC
Confidence 88899887642111 1111111 02356666543 34455556899999997653
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=54.94 E-value=36 Score=39.16 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=46.5
Q ss_pred CCeEEEEEcCCCcEEEEEcC-------------CcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe
Q 001184 966 VGETRVQFHSDQVRLLVNHE-------------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 966 ~~v~~~~~s~d~~~l~~~~d-------------~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
...-.|+|+++|.++++.+. +.+.+.+..+++..+.+..+. ...++.++|+||++.|++.-
T Consensus 476 ~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred cCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEEE
Confidence 45677999999997776321 246677777888777666654 68999999999999888765
No 377
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=54.66 E-value=2.8e+02 Score=31.44 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=37.3
Q ss_pred CCceeEEEecccCceeEEEEEcCCCC--EEEEEeCC----CcEEEEeCCCCceeEEEeccCCCCCcceEEEcC
Q 001184 576 EGALKRTYIGFRKKSAGVVQFDTTRN--RILAAGED----NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1130)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~i~~v~~s~ 642 (1130)
.|+.+......+...+....|.|+.. .++.+.++ ....+.|..+|+.+.......+........|.|
T Consensus 355 dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp 427 (620)
T 2zuy_A 355 DGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDP 427 (620)
T ss_dssp TSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCT
T ss_pred CCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecCC
Confidence 34444433323343566667777743 45555543 256788999999988776544433333333444
No 378
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=53.39 E-value=2e+02 Score=29.25 Aligned_cols=196 Identities=11% Similarity=0.050 Sum_probs=107.9
Q ss_pred cceEEEEEeccCCeEEEeeeCCeEEe---eecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEec-
Q 001184 768 SKVARLLYTNSGIGILALWSNGVQKL---WKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK- 843 (1130)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~i---w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~- 843 (1130)
..+..+........++..++.|.+.- |++... . |. + . + .....|..+....
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~------~---------~~---~----l-l--~~~e~i~~v~~~~~ 78 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQG------S---------KV---S----L-K--SREEKIVGAFIREK 78 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTS------E---------EC---C----C-S--STTCCEEEEEEGGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccC------c---------cc---c----c-C--CCCCEEEEEECCcC
Confidence 44555555556667777777777653 332110 0 00 0 1 1 2345565554421
Q ss_pred CCCEEEEEe-CCeEEEEECCCce------eEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec---------C
Q 001184 844 NDSYVMSAG-GGKVSLFNMMNFK------VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV---------D 907 (1130)
Q Consensus 844 dg~~la~~~-dg~i~iwd~~~~~------~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~---------~ 907 (1130)
+..+++..+ +|.++-..+.... ....+. ..+.+..+.... +...++..+.+|.+..+.... |
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~G 156 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARG 156 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCC
Confidence 456777776 8999988875542 111122 234566665555 555777888999988887642 2
Q ss_pred eEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccce---eeEeccCCCCCCCeEEEE-EcCCCcEEEEE
Q 001184 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS---IAIQLPAGKLPVGETRVQ-FHSDQVRLLVN 983 (1130)
Q Consensus 908 ~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~v~~~~-~s~d~~~l~~~ 983 (1130)
.....+.. .+.|.++...+++..++.++..|.++...++....... -.... .....+..+. ...+...++.+
T Consensus 157 v~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i---~~~~~lv~~~~~~~~~~i~~~t 232 (276)
T 3no0_A 157 VQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS---GTKDTLVDLIPIKEEVELLITT 232 (276)
T ss_dssp EECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC---CSSSCEEEEEEESSEEEEEEEE
T ss_pred EEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE---cCCCcEEEEEEeCCCCEEEEEc
Confidence 22222332 35677776666777899999999999988765332111 01111 1113333332 23344455556
Q ss_pred cCCcEEE--EECC
Q 001184 984 HETQLAI--YDGS 994 (1130)
Q Consensus 984 ~d~~i~v--~d~~ 994 (1130)
.+|.+.. ++..
T Consensus 233 ~~G~~ir~~~~~~ 245 (276)
T 3no0_A 233 KNGKAFYDKINQK 245 (276)
T ss_dssp TTSCEEEEEEEGG
T ss_pred CCCeEEEeeeCHH
Confidence 6666666 6654
No 379
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=53.08 E-value=46 Score=34.59 Aligned_cols=110 Identities=14% Similarity=0.189 Sum_probs=61.2
Q ss_pred HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhccc-ccccCHHHHHHHH
Q 001184 38 MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKV-FSTFNEELFKEIT 116 (1130)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~l~ 116 (1130)
..+|++.|-+|+|-||.+.+..+ - .+ ++.++++.+|+.+|.+-..- +...+...-..|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl------~----~R----------y~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI------A----NR----------YVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH------H----HH----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH------H----HH----------HHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 67899999999999998877654 1 11 22345566666666553221 2222334445666
Q ss_pred HhhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCccccccCCCCChHHHHHHHHHHHHHHHhhc
Q 001184 117 QLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLNWQHQLC 186 (1130)
Q Consensus 117 ~ll~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~ 186 (1130)
.++... .+.. .+.-..+++..|. +|.+.+|++ .+. ..++++.|++|=....
T Consensus 77 ~llvev-~~~~----~~~~~~~~~~rl~-~l~~~~p~~------------~~~-r~~fi~~ai~WS~~~g 127 (312)
T 2wpv_A 77 FYLLEV-YDLA----EVKVDDISVARLV-RLIAELDPS------------EPN-LKDVITGMNNWSIKFS 127 (312)
T ss_dssp HHHHHH-HHHT----TCCCSHHHHHHHH-HHHTTCCTT------------CTT-HHHHHHHHHHHHHHTS
T ss_pred HHHHHH-HHHc----CCCCCHHHHHHHH-HHHHHCCCC------------Cch-HHHHHHHHHHHHhhcC
Confidence 555421 1110 1111344555555 555555552 223 3778888999977654
No 380
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=50.62 E-value=55 Score=34.27 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=59.4
Q ss_pred HHHHHHHHhccCH---HHHHHHhccCCCcCCCccchhhhHHHHHhHHHHHHhcCCHHHHHHHHHhhccc-ccccCHHHHH
Q 001184 38 MKYFEEKALAGEW---DEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKV-FSTFNEELFK 113 (1130)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~~~~-~~~~~~~~~~ 113 (1130)
..+|++.|-+|+| -||.+.+..+ . .+ ++..+++.+|+.+|.+-..- +...+...-.
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi------~----~R----------y~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV------A----AR----------YSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH------H----HH----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH------H----HH----------HHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 6789999999999 8887776544 1 12 22345555555555542111 1122334445
Q ss_pred HHHHhhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCccccccCCCCChHHHHHHHHHHHHHHHhhc
Q 001184 114 EITQLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLNWQHQLC 186 (1130)
Q Consensus 114 ~l~~ll~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~ 186 (1130)
.|+.+|..- .++. .+.-..+++.+|.+-+. .+++ -.|.| .++|+.|++|=....
T Consensus 76 DL~~llvev-y~~~----~~~~~~~~~~rL~~L~~-~~~~------------~~p~r-~~fi~~ai~WS~~~g 129 (336)
T 3lpz_A 76 DLAVLLVDT-FRQA----GQRVDGASRGKLLGCLR-LFQP------------GEPVR-KRFVKEMIDWSKKFG 129 (336)
T ss_dssp HHHHHHHHH-HHHH----TCCCCHHHHHHHHHHHT-TSCT------------TCHHH-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-HHHc----CCCCCHHHHHHHHHHHH-hCCC------------CCcHH-HHHHHHHHHHHhhcC
Confidence 666555421 1110 01112355555544443 4454 22344 779999999987644
No 381
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.02 E-value=65 Score=37.00 Aligned_cols=64 Identities=9% Similarity=0.179 Sum_probs=48.2
Q ss_pred cEEEEEEecCCCeEEEeeec--------CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEE
Q 001184 543 WCTTMLYSADGSRLFSCGTS--------KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA 606 (1130)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~--------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 606 (1130)
..-.|+|+|.|++++.--.+ ..+...+.+.+..++++.+.+.+.....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35678999999866553111 01345677888888999888888888899999999999877764
No 382
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=44.86 E-value=2.9e+02 Score=28.80 Aligned_cols=172 Identities=9% Similarity=0.024 Sum_probs=92.1
Q ss_pred CCCeeEEEEcc---CCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEE-cCCCcEEEEEcCCcEEEEE
Q 001184 917 QKHITGLAFST---NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF-HSDQVRLLVNHETQLAIYD 992 (1130)
Q Consensus 917 ~~~V~~l~~s~---dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~~~~d~~i~v~d 992 (1130)
...|.++..-+ +..+++.++.+|.++.-.+.........-.....-...+.+..+.. +.+...++.+..|.+..+.
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 34566654433 5789999999999999887764332211111111111244444444 4445566668888888777
Q ss_pred CC--Ccee-------eeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCCC-cccccCCCCCce
Q 001184 993 GS--KMEC-------IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS-AYMSQASPNSQT 1062 (1130)
Q Consensus 993 ~~--~~~~-------~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~ 1062 (1130)
.. .-.. +..+... ....|.++...+++.+|+..+..|.++.-.+.......+-... ..+......++-
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~--~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~l 251 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFN--IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRL 251 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCC--TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSE
T ss_pred CcccccCcCCcCCCCeeeecCC--CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeE
Confidence 66 2111 1111111 1457888777777778999999999998876644332220000 000000001222
Q ss_pred eeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1063 VFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1063 ~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
+ .+.... +...++..+.+|.+.-++.++
T Consensus 252 v---~~~~~~-~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 252 V---GALIVD-DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp E---EEEEEC-TTCEEEEEEGGGCEEEEEGGG
T ss_pred E---EEEEeC-CCccEEEEcCCCeEEEEehhh
Confidence 2 222222 344666677788777777653
No 383
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=43.54 E-value=4e+02 Score=30.04 Aligned_cols=187 Identities=13% Similarity=0.062 Sum_probs=98.7
Q ss_pred eeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec-CCCcCEEEEeecccCCccEEEEEecCC----cEEEEEccCC
Q 001184 457 VNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDG----KIKAWLYDNV 531 (1130)
Q Consensus 457 V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~vwd~~~~ 531 (1130)
+.-..+.-||+. -|+.|+ .++|.+|+.+.... +|...+....|.|+..+..++.+.+++ -..+.|..++
T Consensus 328 ~~vaDVDgDG~d-EIv~Gs-----~~iD~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG 401 (591)
T 2zux_A 328 LSIADVDGDGKD-EIIFGS-----MAVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATG 401 (591)
T ss_dssp CEEECCSSSSSC-EEEETT-----EEECTTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTC
T ss_pred CeeEeCCCCCCc-eEEEee-----eEECCCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCC
Confidence 444455566765 455554 25676777776653 788888888888876667777776652 3445788888
Q ss_pred cceeeecCC--CccEEEEEEecCCC--eEEEeeecCCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEEe
Q 001184 532 GSRVDYDAP--GLWCTTMLYSADGS--RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1130)
Q Consensus 532 ~~~~~~~~~--~~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1130)
+.+...... ........|.|+.. .+.+ . . .+++.. |+.+.... ....-..+-|..+...-+.-
T Consensus 402 ~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~-~------~--~l~~~~-G~~i~~~~--p~~~N~~i~WdGDl~relld- 468 (591)
T 2zux_A 402 KILWGVYAGKDVGRGMAADIDPRYPGQEVWA-N------G--SLYSAK-GVKIGSGV--PSSTNFGIWWDGDLLREQLD- 468 (591)
T ss_dssp CEEEEECCSSCCCCEEEECCCTTSSSCEEEE-T------T--EEECTT-SCBCSSCC--CSCCSEEECCSSSSSCEEEE-
T ss_pred cEEEEcCCCCCCCceeEEecCCCCCceEEEe-c------C--ceECCC-CCEecCCC--CCCcceeEEECCCCcHhhhC-
Confidence 777765443 23344444555432 1211 1 1 345543 33332210 11122245666665332222
Q ss_pred CCCcEEEEeCCCCceeEEEeccC-----CCCCcceEEEc--CC--CCEEEEEeCCCcEEEEEcCC
Q 001184 608 EDNQIKFWDMDNVNMLTSTEAEG-----GLPSLPRLRFN--KE--GNLLVVTTADQGIKILANAD 663 (1130)
Q Consensus 608 ~dg~i~vwd~~~~~~~~~~~~~~-----~~~~i~~v~~s--~~--~~~l~~~~~dg~i~iw~~~~ 663 (1130)
.+.|.-|+...++....+...+ +...-.++... -| .+.+.-...+..++||....
T Consensus 469 -~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~ 532 (591)
T 2zux_A 469 -SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTI 532 (591)
T ss_dssp -TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCC
T ss_pred -CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCC
Confidence 2468889987776544444432 01122233332 22 23344344556799997643
No 384
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=43.43 E-value=3.4e+02 Score=29.23 Aligned_cols=298 Identities=12% Similarity=0.037 Sum_probs=136.7
Q ss_pred cceEEEEEeccCCeEEEeeeCCeEEeeecCCCCCCCCcccccccccccccCCCCcceeccCCCCCCCceeEEEEecCCCE
Q 001184 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1130)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1130)
.+|..++. .+...++...+|.+..|-.....+.-.+.......+. . +..-....|..++...+ ..
T Consensus 16 ~~v~~ia~--G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~----------~--v~~l~~~~i~~va~G~~-ht 80 (406)
T 4d9s_A 16 RKVLIISA--GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPT----------Q--LSALDGHQIVSVTCGAD-HT 80 (406)
T ss_dssp CCEEEEEE--CSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEE----------E--CGGGTTSCEEEEEECSS-EE
T ss_pred cceEEEec--CCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCE----------E--ecccCCCCEEEEEeCcc-eE
Confidence 34444443 3445666677888888865443332222111111000 0 10011234555554332 22
Q ss_pred EEEEeC-CeEEEEECCCc---------eeE--EEEe-CCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeecC-------
Q 001184 848 VMSAGG-GKVSLFNMMNF---------KVM--TTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD------- 907 (1130)
Q Consensus 848 la~~~d-g~i~iwd~~~~---------~~~--~~~~-~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~------- 907 (1130)
++...+ +.|+.|-.... ... ..+. .....|..++. +....+.-..||.|+.|-....
T Consensus 81 ~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g~ 157 (406)
T 4d9s_A 81 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLGD 157 (406)
T ss_dssp EEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred EEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCCC
Confidence 333344 58888864321 111 1111 12235666665 4456666778999999975421
Q ss_pred ---eE-EEEEecC-CCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCccc-------ceeeEeccCCCCCCCeEEEEEcC
Q 001184 908 ---EV-KTKLKGH-QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR-------KSIAIQLPAGKLPVGETRVQFHS 975 (1130)
Q Consensus 908 ---~~-~~~l~~h-~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~ 975 (1130)
.. ...+... ...|..++.. ..+.+....||.|+.|-....... ...+.... ......+..++...
T Consensus 158 ~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~-~~~~~~i~~va~G~ 234 (406)
T 4d9s_A 158 TEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVT-STGGEKMSMVACGW 234 (406)
T ss_dssp CCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECC-CSTTCCEEEEEECS
T ss_pred CCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEec-ccCCceEEEEEECC
Confidence 11 1112211 2256666654 346666778999999986542221 11111111 11113455554433
Q ss_pred CCcEEEEEcCCcEEEEECCCceee-----------eeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC-ccc
Q 001184 976 DQVRLLVNHETQLAIYDGSKMECI-----------RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS-LRL 1043 (1130)
Q Consensus 976 d~~~l~~~~d~~i~v~d~~~~~~~-----------~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~-~~~ 1043 (1130)
. ..++...++.++.|-......+ ..+... ....|..++-. ..+.++-..||.|+.|-... |++
T Consensus 235 ~-ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~--~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqL 309 (406)
T 4d9s_A 235 R-HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEAL--SNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQV 309 (406)
T ss_dssp S-EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGG--TTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTT
T ss_pred C-cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEeccc--CCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCC
Confidence 2 2344467888888865422111 111111 12346665543 34455556799999996553 222
Q ss_pred ccccCCCcccccCCCCCceeeeEEEEEcCCCCCEEEEEeCCCcEEEEeCCC
Q 001184 1044 RCRIAPSAYMSQASPNSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1094 (1130)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~vW~~~~ 1094 (1130)
-..-......|..........++.++- .....+.-..||.|..|--..
T Consensus 310 G~g~~~~~~~p~~v~~~~~~~v~~va~---G~~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 310 GVGNNLDQCSPVQVRFPDDQKVVQVSC---GWRHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp CSSSSSCEEEEEEECCGGGCCEEEEEE---CSSEEEEEETTSCEEEEECCT
T ss_pred CCCCCCCCccCEEEeccCCCcEEEEEe---CCCeEEEEeCCCCEEEecCCC
Confidence 110000000000000001112333332 234555556799999998643
No 385
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=41.57 E-value=5.3e+02 Score=30.85 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=73.1
Q ss_pred CCCEEEEEEecCCCeEEEEEeCcCeEEEEeCCCCceeecccceeeeccccccceeeeeecCCCccEEEEEEcCC-CCEEE
Q 001184 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIG 425 (1130)
Q Consensus 347 ~~~V~~v~fspdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la 425 (1130)
...|.+++++|.....+.+++..+.|...+= .|+. |..-.... .. -.-....|.+|+++|. ...+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~t--------W~~~~~~~--~~--~~~~~~~i~~ia~dp~~~~~i~ 80 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSK--------WIPLNDFI--EA--QDMNIMGTESIALDPNNPDRLY 80 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTE--------EEESCTTC--CG--GGGGGCSEEEEEEETTEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCC--------eeECccCC--Cc--ccccCCceeEEEECCCCCCEEE
Confidence 4689999999975445666776676554442 2321 21100000 00 0001346999999984 34444
Q ss_pred EEeCCCe----EEEEEe-cCCccceeeee-ee--c---CCCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEec
Q 001184 426 VAFTKHL----IHLYTY-QGSNDLCQSLE-ID--A---HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE 494 (1130)
Q Consensus 426 s~~~d~~----i~vwd~-~~~~~~~~~~~-~~--~---h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~ 494 (1130)
.+..+.. -.||.- +.|+.-..... +. + ....+..+++.|.... .++.+...+.|..=+-.|+.-..+.
T Consensus 81 ~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~-~v~~g~~~~gl~~S~DgG~TW~~~~ 159 (789)
T 1sqj_A 81 LAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSN-EVWMGTRTEGIWKSSDRAKTWTNVT 159 (789)
T ss_dssp EEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEE-EEEEECSSSCEEEESSTTSSCEEET
T ss_pred EEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCC-EEEEEeccCCEEEECCCCcccCCCc
Confidence 4432211 234433 33433222110 00 0 0113567888876543 4555554443322112222222221
Q ss_pred C------CCcCEEEEeecccCCccEEEEEecC
Q 001184 495 G------HEAPVYSVCPHQKENIHFIFSTAVD 520 (1130)
Q Consensus 495 ~------h~~~v~~~~~~~~~~~~~l~s~s~d 520 (1130)
. ....+..+.++|... ..++.+..+
T Consensus 160 ~~~~~~~~~~~~~~i~~~p~~~-~~~~~~~~~ 190 (789)
T 1sqj_A 160 SIPDAFTNGIGYTSVIFDPERN-GTIYASATA 190 (789)
T ss_dssp TSCCCCSTTTCEEEEEECTTST-TCEEEEESS
T ss_pred cCccccCCCCCeEEEEECCCCC-CEEEEEEcC
Confidence 1 124577888876543 345555544
No 386
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=41.09 E-value=93 Score=35.29 Aligned_cols=64 Identities=9% Similarity=0.179 Sum_probs=46.7
Q ss_pred cEEEEEEecCCCeEEEeeec--------CCCCcEEEEeeCCCCceeEEEecccCceeEEEEEcCCCCEEEEE
Q 001184 543 WCTTMLYSADGSRLFSCGTS--------KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA 606 (1130)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~--------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 606 (1130)
....++|.++|.+.+..-.+ ..+...++.++..++++.+.+.+.....++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 46789999999877733110 11234788889888988777766555578999999999988775
No 387
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=37.48 E-value=1.7e+02 Score=24.59 Aligned_cols=90 Identities=8% Similarity=-0.068 Sum_probs=52.0
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHhHH
Q 001184 7 ELVFLILQFLDEEKFKESVHRLEQESGFFFN-----MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1130)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1130)
....+...++...-|.++...+++-.....+ ...-.-....|+|++|++++.+........ .. +.+.+ -
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~-~~~~l----a 91 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IK-GYTRK----A 91 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HH-HHHHH----H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hH-HHHHH----H
Confidence 3455556666666688888888776655443 222234466889999988887652221111 11 11111 1
Q ss_pred HHHHhcCCHHHHHHHHHhhcc
Q 001184 82 LEALDRHDRAKAVEILVKDLK 102 (1130)
Q Consensus 82 lell~~~~~~~a~~~l~~~~~ 102 (1130)
.-+...++..+|+..+++-+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 113456888999888886543
No 388
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=37.42 E-value=27 Score=27.68 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHhcCCC
Q 001184 7 ELVFLILQFLDEEKFKESVHRLEQESGFF 35 (1130)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1130)
-+.-||-.||.=.||+-|...|+-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 36789999999999999999999999985
No 389
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=35.28 E-value=1.4e+02 Score=25.56 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=48.9
Q ss_pred HhhhhccHHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHhHHHHHHhcC
Q 001184 14 QFLDEEKFKESVHRLEQESGFFFN-----MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRH 88 (1130)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~ 88 (1130)
.+++.--|.++...+++=-.+..+ ...=.-....|+|++|++.+.+...++... .. ..+ ..- .=+...|
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~-a~~--~lg--~~~~~~~ 95 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK-GYI--RKA--ACLVAMR 95 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHH--HHH--HHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH-HHH--HHH--HHHHHCC
Confidence 344445577777777664443332 122233456788888888776652222111 11 111 111 1134557
Q ss_pred CHHHHHHHHHhhcccccccCHHHHHHHHHh
Q 001184 89 DRAKAVEILVKDLKVFSTFNEELFKEITQL 118 (1130)
Q Consensus 89 ~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l 118 (1130)
+.++|+..+++-+.-- -.+++-...|..+
T Consensus 96 ~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 124 (126)
T 4gco_A 96 EWSKAQRAYEDALQVD-PSNEEAREGVRNC 124 (126)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-cCCHHHHHHHHHh
Confidence 8888888887643311 1134444444443
No 390
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=34.16 E-value=22 Score=28.61 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.8
Q ss_pred CCcchHHHHHHHHHhhhhc
Q 001184 1 MSSLSRELVFLILQFLDEE 19 (1130)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~ 19 (1130)
|+..++++...|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 7788999999999999764
No 391
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.18 E-value=1.3e+02 Score=30.77 Aligned_cols=85 Identities=14% Similarity=-0.012 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhhhhcc-HHHHHHHHHH--hcCCCcc---H--HHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHH
Q 001184 5 SRELVFLILQFLDEEK-FKESVHRLEQ--ESGFFFN---M--KYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEI 76 (1130)
Q Consensus 5 ~~e~~rli~q~L~~~g-~~~s~~~L~~--Esg~~~~---~--~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1130)
.-+.++++.+++...| +.++...|++ +.++..+ . ..=.-....|++++|++.+.+ + .+ .. +.+.+
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~---~~--~~-~~~~l 136 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-G---DS--LE-CMAMT 136 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-C---CS--HH-HHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-C---CC--HH-HHHHH
Confidence 3456788888888887 8888888876 3343332 2 112445678999999988887 1 11 11 11111
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHhh
Q 001184 77 RKQKYLEALDRHDRAKAVEILVKD 100 (1130)
Q Consensus 77 ~~~~~lell~~~~~~~a~~~l~~~ 100 (1130)
-+ =++..|+.++|+..+++-
T Consensus 137 -~~---~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 137 -VQ---ILLKLDRLDLARKELKKM 156 (291)
T ss_dssp -HH---HHHHTTCHHHHHHHHHHH
T ss_pred -HH---HHHHCCCHHHHHHHHHHH
Confidence 11 134567788887777764
No 392
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=31.97 E-value=2e+02 Score=29.24 Aligned_cols=83 Identities=12% Similarity=0.076 Sum_probs=42.7
Q ss_pred HHHHHhhhhcc-HHHHHHHHHHhcCCCcc-HH-HHHHHHhccCHHHHHHHhccCCC---cCCCccchhhhHHHHHhHHHH
Q 001184 10 FLILQFLDEEK-FKESVHRLEQESGFFFN-MK-YFEEKALAGEWDEIEKYLSGFTK---VDDNRYSMKIFFEIRKQKYLE 83 (1130)
Q Consensus 10 rli~q~L~~~g-~~~s~~~L~~Esg~~~~-~~-~~~~~i~~g~w~~~~~~l~~~~~---~~~~~~~~~~~~~i~~~~~le 83 (1130)
.++.+.+-.+| |..+...++.++.-.+. +. .-.-....|++++|++.+..+.. .+++ ..+.+..- .-
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~-----~~~~~~la--~~ 110 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN-----TTFLLMAA--SI 110 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC-----HHHHHHHH--HH
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC-----HHHHHHHH--HH
Confidence 44455555555 77777766554221111 22 22334456778888888876511 1211 11111111 11
Q ss_pred HHhcCCHHHHHHHHHh
Q 001184 84 ALDRHDRAKAVEILVK 99 (1130)
Q Consensus 84 ll~~~~~~~a~~~l~~ 99 (1130)
++..|+.++|+..+++
T Consensus 111 ~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHhC
Confidence 3456888888888887
No 393
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=31.24 E-value=6.2e+02 Score=28.64 Aligned_cols=133 Identities=10% Similarity=0.032 Sum_probs=69.7
Q ss_pred eEEEEEcCCCcEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEeC--------------CCcE
Q 001184 968 ETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT--------------DGSI 1033 (1130)
Q Consensus 968 v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~--------------Dg~i 1033 (1130)
+....-.++|.++... ...+..+|.. |+.+..+....+....-..+...++|.+|+++.. +..|
T Consensus 209 l~~~~g~~nG~l~~g~-G~~i~elD~~-Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I 286 (571)
T 3elq_A 209 LMGIRETPRGTFTAVQ-GQHWYEFDMM-GQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHI 286 (571)
T ss_dssp CEEEEECTTSCEEEEE-BTEEEEECTT-CCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEE
T ss_pred EEEEEecCCCCEEEec-CcEEEEECCC-CcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEE
Confidence 3444445677765542 2346666654 5555544332110011124666889998886531 3356
Q ss_pred EEEeCCCcccccccCCCccccc-----------------------------------CC-----CCCceeeeEEEEEcCC
Q 001184 1034 GVFDADSLRLRCRIAPSAYMSQ-----------------------------------AS-----PNSQTVFPLVVTSHPQ 1073 (1130)
Q Consensus 1034 ~vwd~~~~~~~~~~~~~~~~~~-----------------------------------~~-----~~~~~~~~~~~~~~~~ 1073 (1130)
..-| .+|+.+..+.....+.. +. ....-....++.+.+.
T Consensus 287 ~EVD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~ 365 (571)
T 3elq_A 287 LEVD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAK 365 (571)
T ss_dssp EEEC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETT
T ss_pred EEEC-CCCCEEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcCC
Confidence 6667 77776654432111100 00 0012234566777775
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCccCCcccccC
Q 001184 1074 EPNQLAVGLTDGSVKVIEPSETERKWGVAVPV 1105 (1130)
Q Consensus 1074 ~~~~l~s~~~Dg~v~vW~~~~~~~~w~~~~p~ 1105 (1130)
++.+|+|+=.- .|..-+- +++..|.+..+.
T Consensus 366 dd~~liSsR~~-~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 366 DDSIILSSRHQ-GVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp TTEEEEEETTT-EEEEEET-TSCEEEEESCST
T ss_pred CCEEEEECCcc-EEEEEcC-CCcEEEEECCCC
Confidence 55566665444 6666665 788888777665
No 394
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=29.68 E-value=2.5e+02 Score=32.80 Aligned_cols=37 Identities=11% Similarity=0.398 Sum_probs=30.9
Q ss_pred eeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeEEEec
Q 001184 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1130)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 628 (1130)
.|.++.+ +..++++-+.|.++|+|++.+++++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555444 467999999999999999999999988776
No 395
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=28.35 E-value=2.3e+02 Score=22.79 Aligned_cols=89 Identities=8% Similarity=-0.088 Sum_probs=49.9
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHhHHH
Q 001184 8 LVFLILQFLDEEKFKESVHRLEQESGFFFN-----MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (1130)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~l 82 (1130)
...+...++...-|.++...+++--....+ ...-.-....|+|++|+.++.......... .. +.+.+ -.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~-~~~~~----a~ 80 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GK-GYSRK----AA 80 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HH-HHHHH----HH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HH-HHHHH----HH
Confidence 455556666666688888877764433322 222234456789999988887652221111 11 11111 11
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 001184 83 EALDRHDRAKAVEILVKDLK 102 (1130)
Q Consensus 83 ell~~~~~~~a~~~l~~~~~ 102 (1130)
-+...++..+|+..+++-+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 13456888899888886543
No 396
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=28.20 E-value=5.6e+02 Score=27.15 Aligned_cols=147 Identities=10% Similarity=0.143 Sum_probs=76.8
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCC-------ccceeeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe----c-
Q 001184 418 SPDGNFIGVAFTKHLIHLYTYQGS-------NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD----L- 485 (1130)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~-------~~~~~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd----~- 485 (1130)
-|+..++++.+.+|.|+--.+..- +.+. ...+. ..+.+..+....... .++..+..|.+.-.. .
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~-~~~lk-e~D~l~~~~~~~t~d--~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRS-AASTK-EEDFIDQLWLVNTHD--TLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSE-EEECS-CCCCEEEEEEECTTC--EEEEEETTSEEEEEEGGGSCB
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCce-ecccC-CCCEEEEEEEecCCC--EEEEEeCCCeEEEEEHHHCcC
Confidence 467789999999999997665321 1111 11222 234455555554444 344444455544333 1
Q ss_pred -----CCCeeeE---ecCCCcCEEEEeeccc-CCccEEEEEecCCcEEEEEccCCcc-----e--eeecCCCccEEEEEE
Q 001184 486 -----SGRKLFQ---FEGHEAPVYSVCPHQK-ENIHFIFSTAVDGKIKAWLYDNVGS-----R--VDYDAPGLWCTTMLY 549 (1130)
Q Consensus 486 -----~~~~~~~---~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~-----~--~~~~~~~~~v~~~~~ 549 (1130)
.|..+.. +. ....|.++..... .+..+|+.++..|.++...+..... . ..+.. +..+..+..
T Consensus 80 ~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~ 157 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVAL 157 (370)
T ss_dssp CCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEE
T ss_pred CCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEE
Confidence 1222211 22 3445665543321 2346899999999999887653221 1 12222 334444444
Q ss_pred ecCCCeEEEeeecCCCCcEEEEeeC
Q 001184 550 SADGSRLFSCGTSKEGDSHLVEWNE 574 (1130)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1130)
......++..+. .|.+..++.
T Consensus 158 ~~~~~~i~l~T~----~G~~irf~~ 178 (370)
T 3l6v_A 158 TDGDRDVLLFAS----NGKTVRFGE 178 (370)
T ss_dssp ECSCCEEEEEET----TSEEEEEEG
T ss_pred eCCCceEEEEeC----CCeEEEEEc
Confidence 444555555553 666666654
No 397
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=27.32 E-value=2.7e+02 Score=23.14 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=16.6
Q ss_pred EEEEecCCCEEEEEeCCeEEEEECCC
Q 001184 838 CVALSKNDSYVMSAGGGKVSLFNMMN 863 (1130)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~iwd~~~ 863 (1130)
.+.+..||.+++...++. .+|...+
T Consensus 54 ~L~l~~dGnLvL~d~~~~-~vWss~t 78 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSGR-SLWASHS 78 (105)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECCC
T ss_pred EEEEeCCccEEEECCCcE-EEEEecC
Confidence 577888888877655554 3676543
No 398
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=27.17 E-value=2.1e+02 Score=29.06 Aligned_cols=103 Identities=12% Similarity=0.114 Sum_probs=54.5
Q ss_pred HHHhhhhccHHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHhHHHHHHh
Q 001184 12 ILQFLDEEKFKESVHRLEQESGFFFN-----MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALD 86 (1130)
Q Consensus 12 i~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~ 86 (1130)
-..++..--|.++...|++=-....+ ...-+-.+..|++++|+..+.++.....+. . ...-..-+++..
T Consensus 124 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~----~--~~~~~~~~~l~~ 197 (287)
T 3qou_A 124 AMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT----R--YQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH----H--HHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch----H--HHHHHHHHHHHh
Confidence 33344444566666666654443332 233355667888888888888773332111 1 112222344555
Q ss_pred cCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcc
Q 001184 87 RHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121 (1130)
Q Consensus 87 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~ 121 (1130)
.++..+|+..+++.+.--. .+.+-...|+.++..
T Consensus 198 ~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAENP-EDAALATQLALQLHQ 231 (287)
T ss_dssp HHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred hcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHH
Confidence 5666677777776543221 244555566655543
No 399
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=25.57 E-value=3.1e+02 Score=34.60 Aligned_cols=38 Identities=8% Similarity=0.225 Sum_probs=31.3
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCcEEEEEeecCeEEEEEe
Q 001184 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK 914 (1130)
Q Consensus 876 ~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 914 (1130)
.+.+++..+ +..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345556666 77899999999999999999999988754
No 400
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=25.35 E-value=1.8e+02 Score=24.82 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=48.7
Q ss_pred hhhhccHHHHHHHHHHhcCCCcc-H----HHHHHHHhccCHHHHHHHhccCCCc-CCCccchhhhHHHHHhHHHHHHhcC
Q 001184 15 FLDEEKFKESVHRLEQESGFFFN-M----KYFEEKALAGEWDEIEKYLSGFTKV-DDNRYSMKIFFEIRKQKYLEALDRH 88 (1130)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~lell~~~ 88 (1130)
+++.--|.++...+++=-.+..+ . ..=.-....|+|++|++.+.+...+ ++.......+-.++-..=.-+...+
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~ 97 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN 97 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 34444477887777664444333 1 1113355678899888877654111 1110000011111111111234568
Q ss_pred CHHHHHHHHHhhcccccccCHHHHHHHH
Q 001184 89 DRAKAVEILVKDLKVFSTFNEELFKEIT 116 (1130)
Q Consensus 89 ~~~~a~~~l~~~~~~~~~~~~~~~~~l~ 116 (1130)
+..+|+..+++-|.-. .+++.+..|.
T Consensus 98 ~~~~A~~~~~kal~~~--~~~~~~~~l~ 123 (127)
T 4gcn_A 98 DLSLAVQWFHRSLSEF--RDPELVKKVK 123 (127)
T ss_dssp CHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--cCHHHHHHHH
Confidence 8888988888755422 2455444443
No 401
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=24.99 E-value=48 Score=26.33 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc-H-HHHHHHHhcc
Q 001184 6 RELVFLILQFLDEEKFKESVHRLEQESGFFFN-M-KYFEEKALAG 48 (1130)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~-~-~~~~~~i~~g 48 (1130)
.++.+-|+++|++.| .++..|-++-|++-. + ..|.....+|
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~aVr~~L~~Le~eG 58 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKREVNKALYDLQRSA 58 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 467888999999999 899999999999765 2 3344444444
No 402
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=24.74 E-value=9.1e+02 Score=28.42 Aligned_cols=259 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred CceeEEEEecC--CCEEEEEeCCeEEEEECCCceeEEEEeCCC------CCeEEEEEeCCCCcEEEEEeCC--------C
Q 001184 834 DVVPCVALSKN--DSYVMSAGGGKVSLFNMMNFKVMTTFMSPP------PASTFLAFHPQDNNIIAIGMED--------S 897 (1130)
Q Consensus 834 ~~i~~l~~s~d--g~~la~~~dg~i~iwd~~~~~~~~~~~~~~------~~i~~l~~sp~~~~~lasg~~d--------g 897 (1130)
..|..++++|. +.+++....+.|...+-....-........ ..|.++++.|.+...++++... .
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Q ss_pred cEEEEEeecCeEEEEEecCCC---------CeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccceeeEeccCC------
Q 001184 898 TIQIYNVRVDEVKTKLKGHQK---------HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAG------ 962 (1130)
Q Consensus 898 ~v~iwd~~~~~~~~~l~~h~~---------~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~------ 962 (1130)
.-.....+.|+.-..+..... .+..|++.|...-.+-++.+.---||--..+...-......+..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~~S~DgG~tW~~~~~~~~~~~~~~~ 182 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLWRSTDYGVTWSKVESFPNPGTYIYD 182 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEEEESSTTSSCEECTTCCCCCCCBSC
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCCcEEEeCCCCcceecccCCCCCcccccC
Q ss_pred ------CCCCCeEEEEEcCCC--------cEEEEEcCCcEEEEECCCceeeeeeecCCCCCCCeEEEEECCCCCEEEEEe
Q 001184 963 ------KLPVGETRVQFHSDQ--------VRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1130)
Q Consensus 963 ------~~~~~v~~~~~s~d~--------~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~ 1028 (1130)
.....+..+.++|.. .+.+...++.-.||...++-.--..............+.++|++.+.++..
T Consensus 183 p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~p~~~~~~~~~~~~~~~l~~~~~ 262 (737)
T 2cn3_A 183 PNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPKGLLPHHGVLASNGMLYITYG 262 (737)
T ss_dssp TTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTCCCSSEEEEEEECTTSEEEEEEE
T ss_pred cccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCCCCcccceEEEECCCCeEEEEec
Q ss_pred ---------CCCcEEEEeCCCcccccccCCCcccccCCCC--CceeeeEEEEEcCCCCCEEEEEeCCCc---EEEEeCCC
Q 001184 1029 ---------TDGSIGVFDADSLRLRCRIAPSAYMSQASPN--SQTVFPLVVTSHPQEPNQLAVGLTDGS---VKVIEPSE 1094 (1130)
Q Consensus 1029 ---------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~Dg~---v~vW~~~~ 1094 (1130)
..+.|+..+-............. . ...-.-..++.+|.++..|.+++.+.. ..||.-..
T Consensus 263 d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~-------~~~~~~~~~~~i~v~p~~~~~ly~~~~~~~~~~~~l~~S~D 335 (737)
T 2cn3_A 263 DTCGPYDGNGKGQVWKFNTRTGEWIDITPIPY-------SSSDNRFCFAGLAVDRQNPDIIMVTSMNAWWPDEYIFRSTD 335 (737)
T ss_dssp SSCCSSCCSCCEEEEEEETTTCCEEECCSSCT-------TSTTCCSEEEEEEECTTCTTCEEEEEECCCSSCCCEEEESS
T ss_pred CCCCccccccCceEEEEeCCCCCEEEccCCCC-------CCcccccccccEEEcCCCCCEEEEEecccCCCCccEEEeCC
Q ss_pred CccCC
Q 001184 1095 TERKW 1099 (1130)
Q Consensus 1095 ~~~~w 1099 (1130)
+...|
T Consensus 336 gG~tW 340 (737)
T 2cn3_A 336 GGATW 340 (737)
T ss_dssp TTSSC
T ss_pred CCccc
No 403
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=24.28 E-value=5.9e+02 Score=26.07 Aligned_cols=189 Identities=11% Similarity=0.078 Sum_probs=101.6
Q ss_pred CCEEEEEe-CCeEEEEECCCceeEEE---------EeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec--------
Q 001184 845 DSYVMSAG-GGKVSLFNMMNFKVMTT---------FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-------- 906 (1130)
Q Consensus 845 g~~la~~~-dg~i~iwd~~~~~~~~~---------~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~-------- 906 (1130)
..++++.+ +|.|+--.+...+..+. +. ..+.+..+.... ....|+..+..|.++-+....
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 34455555 67777666654332211 12 223344444444 445666677888876665431
Q ss_pred -CeEEE---EEecCCCCeeEEEEc---cCCCeEEEEeCCCcEEEEECCCCcccce---eeEeccCCCCCCCeEEEEE-cC
Q 001184 907 -DEVKT---KLKGHQKHITGLAFS---TNLNILVSSGSDAQLIFWNTDTWEKRKS---IAIQLPAGKLPVGETRVQF-HS 975 (1130)
Q Consensus 907 -~~~~~---~l~~h~~~V~~l~~s---~dg~~L~s~s~Dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~v~~~~~-s~ 975 (1130)
|..+. .+. ....|.++... .++.+++.++.+|.++--.+........ ....+..+ +.+..+.. ..
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~---d~lv~~~~~~~ 156 (307)
T 1zi0_A 81 RGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG---DELIGVDLTSG 156 (307)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT---CCEEEEEEECT
T ss_pred CCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC---CEEEEEEEeCC
Confidence 22211 122 33456666442 3566899999999999998764332111 11112221 34444433 44
Q ss_pred CCcEEEEEcCCcEEEEECCCceee-------eeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCc
Q 001184 976 DQVRLLVNHETQLAIYDGSKMECI-------RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1130)
Q Consensus 976 d~~~l~~~~d~~i~v~d~~~~~~~-------~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~ 1041 (1130)
+...++.+.+|.+..++..+-... ..+... ....|.++....++..|++.+..|.++-.++...
T Consensus 157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~--~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~ 227 (307)
T 1zi0_A 157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG--EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEY 227 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGS
T ss_pred CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC--CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHh
Confidence 555666788888888776432111 111111 1456777776666677888899999998877543
No 404
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=24.15 E-value=9.6e+02 Score=28.51 Aligned_cols=164 Identities=10% Similarity=0.067 Sum_probs=80.2
Q ss_pred CCCeeEEEEecCCCceEEEEEcCCCcEEEEecCCCeeeEecCC-------CcCEEEEeecccCCccEEEEEecCCc----
Q 001184 454 VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH-------EAPVYSVCPHQKENIHFIFSTAVDGK---- 522 (1130)
Q Consensus 454 ~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~s~dg~---- 522 (1130)
.+.|.+|+++|.... .++.++..+.|...+-.|+.-..+..+ ...+.++++.+... ..++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~-~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~-~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKD-LLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNP-DRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTT-CEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEE-EEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCC-EEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCC-CEEEEEeCccCCCcc
Confidence 457999999997554 456666667776666455443333322 24689999876433 34444432211
Q ss_pred EEEEEccCCcceee-ecC--------CC-ccEEEEEEecCC-CeEEEeeecCCCCcEEEEeeCCCCceeEEEecc-----
Q 001184 523 IKAWLYDNVGSRVD-YDA--------PG-LWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF----- 586 (1130)
Q Consensus 523 i~vwd~~~~~~~~~-~~~--------~~-~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----- 586 (1130)
-.||.......... ... .. ..+..+++.|.. ..++.+.. .+.|+. ....|+.-..+...
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~----~~gl~~-S~DgG~TW~~~~~~~~~~~ 166 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR----TEGIWK-SSDRAKTWTNVTSIPDAFT 166 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECS----SSCEEE-ESSTTSSCEEETTSCCCCS
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEec----cCCEEE-ECCCCcccCCCccCccccC
Confidence 33444333332221 110 01 124567787753 34444431 222221 11223333333211
Q ss_pred cCceeEEEEEcCC-CCEEEEEeCC-CcEEEEeCCCCceeEE
Q 001184 587 RKKSAGVVQFDTT-RNRILAAGED-NQIKFWDMDNVNMLTS 625 (1130)
Q Consensus 587 ~~~~v~~~~~~~~-~~~l~~~~~d-g~i~vwd~~~~~~~~~ 625 (1130)
....+..+.++|. ++.++++..+ +.|+. ..+.|+.-..
T Consensus 167 ~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~-S~DgG~TW~~ 206 (789)
T 1sqj_A 167 NGIGYTSVIFDPERNGTIYASATAPQGMYV-THDGGVSWEP 206 (789)
T ss_dssp TTTCEEEEEECTTSTTCEEEEESSTTCEEE-ESSTTSSCEE
T ss_pred CCCCeEEEEECCCCCCEEEEEEcCCCeEEE-EcCCCcCccc
Confidence 1134677888875 3466666654 44432 3444544333
No 405
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.69 E-value=44 Score=19.32 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhhhc
Q 001184 6 RELVFLILQFLDEE 19 (1130)
Q Consensus 6 ~e~~rli~q~L~~~ 19 (1130)
+||++||-||-...
T Consensus 5 kDvlql~qQy~qsh 18 (26)
T 1kdl_A 5 KDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 67888888886543
No 406
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=23.66 E-value=3.1e+02 Score=22.59 Aligned_cols=94 Identities=10% Similarity=0.061 Sum_probs=50.3
Q ss_pred HHHHHHhhhhccHHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhccCCCcC-CCccchhhhHHHHHhHHH
Q 001184 9 VFLILQFLDEEKFKESVHRLEQESGFFFN-----MKYFEEKALAGEWDEIEKYLSGFTKVD-DNRYSMKIFFEIRKQKYL 82 (1130)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~l 82 (1130)
..+-..++...-|.++...+++-.....+ ...-.-....|+|++|+.++....... ...........++-..-.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 34444555555578888777764443322 222334456899999999887652211 100000011112222222
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 001184 83 EALDRHDRAKAVEILVKDLK 102 (1130)
Q Consensus 83 ell~~~~~~~a~~~l~~~~~ 102 (1130)
-+...++..+|+..+++-+.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 23567899999999986544
No 407
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=23.29 E-value=6.3e+02 Score=26.09 Aligned_cols=192 Identities=9% Similarity=0.048 Sum_probs=96.8
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCccce-eeeeeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEe----c------CC
Q 001184 419 PDGNFIGVAFTKHLIHLYTYQGSNDLC-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD----L------SG 487 (1130)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~-~~~~~~~h~~~V~~i~~s~d~~~l~l~s~s~d~~v~iwd----~------~~ 487 (1130)
|+..++++.+.+|.|+--.+..-+... ....+... +.+..+....... .++..+..|.+.-.. . .|
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d--~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKD--VLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 566788889999999877654211000 00123332 3344444444444 344445566544433 1 12
Q ss_pred Ceee---EecCCCcCEEEEeeccc-CCccEEEEEecCCcEEEEEccCCc------cee--eecCCCccEEEEEEecCCCe
Q 001184 488 RKLF---QFEGHEAPVYSVCPHQK-ENIHFIFSTAVDGKIKAWLYDNVG------SRV--DYDAPGLWCTTMLYSADGSR 555 (1130)
Q Consensus 488 ~~~~---~~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~------~~~--~~~~~~~~v~~~~~s~~~~~ 555 (1130)
..+. .+. ....|.++..... .++.+++.++.+|.++.-.+.... ... .+.. +..+..+........
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~ 157 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNE 157 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCE
Confidence 2111 122 2334655433222 234678999999999998774221 111 2222 244555555545555
Q ss_pred EEEeeecCCCCcEEEEeeCCCC----c---eeEEEecccCceeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC
Q 001184 556 LFSCGTSKEGDSHLVEWNESEG----A---LKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDN 619 (1130)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~----~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~ 619 (1130)
++..+. .|.+..+....- + -++.+.-..+..+..+...+++. .+++.+..|..+..++..
T Consensus 158 i~l~T~----~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 158 LFLVTH----NGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEEET----TSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEeC----CCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 665554 777777765321 1 11112111222344443333444 788888888887777643
No 408
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=22.67 E-value=2.8e+02 Score=24.44 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCCcc-----HHHHHHHHhccCHHHHHHHhccCCCcCCCccchhhhHHHHHhHHHHHHhcCCHHHHHH
Q 001184 21 FKESVHRLEQESGFFFN-----MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVE 95 (1130)
Q Consensus 21 ~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~ 95 (1130)
+.++...+++-.....+ ...=+-....|+|++|++++.+........ .. +.+.+ = .=+...++.++|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~~-a~~~l-g---~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-PK-AHRFL-G---LLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHHH-H---HHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HH-HHHHH-H---HHHHHcCchHHHHH
Confidence 45566666665554443 112234567899999999998763222111 11 22111 1 12345699999999
Q ss_pred HHHhhcccccccCHHHHHHHHHhhcc
Q 001184 96 ILVKDLKVFSTFNEELFKEITQLLTL 121 (1130)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~l~~ll~~ 121 (1130)
.+++-+.-- ..+++-+..|+.++..
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 999854321 2256777788876654
No 409
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=22.64 E-value=70 Score=37.41 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=30.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEeCCCcccccccCC
Q 001184 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1130)
Q Consensus 1011 ~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~~~~~~~~~~ 1049 (1130)
.|.++.+ +..++++-+.|+.+|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555544 578999999999999999999998777665
No 410
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=22.07 E-value=7.2e+02 Score=26.29 Aligned_cols=196 Identities=8% Similarity=-0.012 Sum_probs=106.5
Q ss_pred cCCCEEEEEe-CCeEEEEECCCc---------eeEEEEeCCCCCeEEEEEeCCCCcEEEEEeCCCcEEEEEeec------
Q 001184 843 KNDSYVMSAG-GGKVSLFNMMNF---------KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV------ 906 (1130)
Q Consensus 843 ~dg~~la~~~-dg~i~iwd~~~~---------~~~~~~~~~~~~i~~l~~sp~~~~~lasg~~dg~v~iwd~~~------ 906 (1130)
++..++++.+ +|.|+--.+... ..-..++ ....+..+.... ....|+..+..|.++-+....
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 4566666666 788887654321 1112222 344566665555 556666677888877665431
Q ss_pred ---CeEEEE---EecCCCCeeEEEEcc---CCCeEEEEeCCCcEEEEECCCCcccceeeEeccCCCCCCCeEEEEE-cCC
Q 001184 907 ---DEVKTK---LKGHQKHITGLAFST---NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF-HSD 976 (1130)
Q Consensus 907 ---~~~~~~---l~~h~~~V~~l~~s~---dg~~L~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~d 976 (1130)
|..+.. +. ....|.++.... ++.+|+.++..|.++.-.+.........-.....-.....+..+.. ..+
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 222111 22 235566665432 4569999999999999987654322111111111111234444443 444
Q ss_pred CcEEEEEcCCcEEEEECCCcee-------eeeeecCCCCCCCeEEEEECC------------------------------
Q 001184 977 QVRLLVNHETQLAIYDGSKMEC-------IRQWVPQDVLSSPISSAAYSC------------------------------ 1019 (1130)
Q Consensus 977 ~~~l~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~v~~v~~s~------------------------------ 1019 (1130)
...++.+..|.+..++...-.. ++.+... ....|.++...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~--~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA--KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEEEECCC----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC--CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 5566667888877777543211 1111111 134566655544
Q ss_pred -----CCCEEEEEeCCCcEEEEeCCCccc
Q 001184 1020 -----NSQLIYATFTDGSIGVFDADSLRL 1043 (1130)
Q Consensus 1020 -----dg~~l~t~~~Dg~i~vwd~~~~~~ 1043 (1130)
++..|++.+..|..+...+.....
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~ 268 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPR 268 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCC
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcc
Confidence 456888999999999988765443
No 411
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=21.42 E-value=6.9e+02 Score=25.81 Aligned_cols=206 Identities=8% Similarity=0.029 Sum_probs=102.4
Q ss_pred CceeEEE-EecCCCEEEEEeCCeEEEEEC---CC------ceeEEE-Ee-CCCCCeEEEEEeCC--CCcEEEEEeCCCcE
Q 001184 834 DVVPCVA-LSKNDSYVMSAGGGKVSLFNM---MN------FKVMTT-FM-SPPPASTFLAFHPQ--DNNIIAIGMEDSTI 899 (1130)
Q Consensus 834 ~~i~~l~-~s~dg~~la~~~dg~i~iwd~---~~------~~~~~~-~~-~~~~~i~~l~~sp~--~~~~lasg~~dg~v 899 (1130)
+.+..+. .+....+++..+.|.+.-+.. .. |..+.. +. .....|.++...++ +..+++..+.+|.+
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~i 118 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMV 118 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeE
Confidence 3344443 344444555555787555543 22 221111 11 12344665544341 25678889999999
Q ss_pred EEEEeec--------CeEEEEEecCCCCeeEEEEccCCCeEEEEeCCCcEEEEECCCCcccc--eeeEeccCCCCCCCeE
Q 001184 900 QIYNVRV--------DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK--SIAIQLPAGKLPVGET 969 (1130)
Q Consensus 900 ~iwd~~~--------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~v~ 969 (1130)
+--.+.. +.....+... +.+..+....+...++..+.+|.+..+....-.... ..-.....-.....+.
T Consensus 119 Krt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv 197 (323)
T 1wp5_A 119 KKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIV 197 (323)
T ss_dssp EEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEE
T ss_pred EEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEE
Confidence 9988752 2222233333 566666666566788889999998888875421110 0001111111224566
Q ss_pred EEEEcCCC--cEEEEEcCCcEEEEECCCc-------eeeeeeecCCCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 001184 970 RVQFHSDQ--VRLLVNHETQLAIYDGSKM-------ECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1130)
Q Consensus 970 ~~~~s~d~--~~l~~~~d~~i~v~d~~~~-------~~~~~~~~~~~~~~~v~~v~~s~dg~~l~t~~~Dg~i~vwd~~~ 1040 (1130)
.+...+++ .+++++..|..+..++... +-+..+.........+.++....++..++..+..|.+....+..
T Consensus 198 ~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 198 SGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred EEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 65444434 3555677777777666431 11111211100022444333333334455555677766666553
No 412
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=21.39 E-value=66 Score=25.11 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHhhhhccHH-HHHHHHHHhcCCCcc
Q 001184 3 SLSRELVFLILQFLDEEKFK-ESVHRLEQESGFFFN 37 (1130)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~-~s~~~L~~Esg~~~~ 37 (1130)
-....+...|+..|.+.||- .+...+.++.|+..+
T Consensus 28 ~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 63 (76)
T 2k9l_A 28 GKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE 63 (76)
T ss_dssp TTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 34567899999999999983 455666666676543
No 413
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=20.25 E-value=3.8e+02 Score=26.97 Aligned_cols=94 Identities=7% Similarity=-0.042 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHhcCCCcc---H----HH----HHHHHhccCHHHHHHHhccCCC-cCCCccchhhhH
Q 001184 7 ELVFLILQFLDEEKFKESVHRLEQESGFFFN---M----KY----FEEKALAGEWDEIEKYLSGFTK-VDDNRYSMKIFF 74 (1130)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~----~~----~~~~i~~g~w~~~~~~l~~~~~-~~~~~~~~~~~~ 74 (1130)
++...+..++....|.++...+++.-..... . .. -.-....|++++|+.++.+... ........ ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-QNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT-HHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH-HHH
Confidence 4556677788888899888877754432211 0 10 1123456899999988755311 11111111 123
Q ss_pred HHHHhHHHHHHhcCCHHHHHHHHHhhc
Q 001184 75 EIRKQKYLEALDRHDRAKAVEILVKDL 101 (1130)
Q Consensus 75 ~i~~~~~lell~~~~~~~a~~~l~~~~ 101 (1130)
.++-..-.-+...++.++|+..+++-+
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444445567899999999998765
Done!