Query 001187
Match_columns 1129
No_of_seqs 550 out of 2728
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 18:11:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0217 Mismatch repair ATPase 100.0 8E-174 2E-178 1532.7 49.0 964 98-1129 8-1001(1125)
2 TIGR01070 mutS1 DNA mismatch r 100.0 2E-133 4E-138 1254.2 75.5 686 327-1129 1-694 (840)
3 PRK05399 DNA mismatch repair p 100.0 5E-132 1E-136 1248.3 75.1 696 324-1128 5-708 (854)
4 COG0249 MutS Mismatch repair A 100.0 5E-133 1E-137 1235.2 64.3 705 324-1129 3-709 (843)
5 KOG0218 Mismatch repair MSH3 [ 100.0 3E-127 6E-132 1092.3 50.7 745 325-1129 160-932 (1070)
6 KOG0219 Mismatch repair ATPase 100.0 1E-82 2.2E-87 743.0 50.5 712 325-1129 10-747 (902)
7 KOG0220 Mismatch repair ATPase 100.0 1E-73 2.2E-78 657.5 45.9 606 451-1128 102-722 (867)
8 KOG0221 Mismatch repair ATPase 100.0 4.6E-68 1E-72 600.1 35.4 493 601-1127 193-699 (849)
9 PRK00409 recombination and DNA 100.0 1E-55 2.2E-60 551.2 42.2 408 674-1128 17-429 (782)
10 TIGR01069 mutS2 MutS2 family p 100.0 6.4E-49 1.4E-53 488.9 43.2 403 673-1128 16-424 (771)
11 PF00488 MutS_V: MutS domain V 100.0 5.5E-40 1.2E-44 357.9 10.2 144 978-1128 1-144 (235)
12 smart00533 MUTSd DNA-binding d 100.0 2E-36 4.2E-41 344.2 32.4 306 669-1006 1-307 (308)
13 COG1193 Mismatch repair ATPase 100.0 5.7E-34 1.2E-38 348.8 31.2 393 675-1128 16-417 (753)
14 cd03286 ABC_MSH6_euk MutS6 hom 100.0 6.3E-34 1.4E-38 306.3 9.8 131 996-1129 2-132 (218)
15 cd03287 ABC_MSH3_euk MutS3 hom 100.0 1.4E-32 3E-37 296.7 10.0 132 994-1128 1-132 (222)
16 PF01624 MutS_I: MutS domain I 100.0 1.4E-31 3.1E-36 259.6 9.2 107 328-444 1-113 (113)
17 cd03285 ABC_MSH2_euk MutS2 hom 100.0 3.1E-30 6.6E-35 279.5 10.2 130 996-1128 2-131 (222)
18 cd03281 ABC_MSH5_euk MutS5 hom 100.0 4.5E-30 9.7E-35 276.7 10.3 129 996-1128 2-130 (213)
19 cd03282 ABC_MSH4_euk MutS4 hom 100.0 1.2E-29 2.5E-34 271.3 10.1 129 996-1128 2-130 (204)
20 cd03284 ABC_MutS1 MutS1 homolo 100.0 1E-28 2.2E-33 266.7 10.0 131 995-1128 1-131 (216)
21 cd03280 ABC_MutS2 MutS2 homolo 99.9 4.3E-25 9.3E-30 236.1 10.3 128 996-1128 2-130 (200)
22 PF05192 MutS_III: MutS domain 99.9 4.8E-23 1E-27 219.9 21.4 91 651-742 1-91 (204)
23 cd03243 ABC_MutS_homologs The 99.9 1.5E-24 3.3E-29 232.2 9.6 128 996-1127 2-129 (202)
24 cd03283 ABC_MutS-like MutS-lik 99.9 2.3E-24 5E-29 229.9 10.1 123 996-1127 2-126 (199)
25 smart00534 MUTSac ATPase domai 99.9 1.3E-23 2.7E-28 222.1 8.5 100 1029-1128 1-100 (185)
26 cd03227 ABC_Class2 ABC-type Cl 99.7 2.9E-18 6.4E-23 177.3 9.1 108 996-1128 2-121 (162)
27 PF05188 MutS_II: MutS domain 99.4 5.5E-12 1.2E-16 126.1 13.8 130 453-621 1-130 (137)
28 PF05190 MutS_IV: MutS family 99.3 2.8E-11 6.1E-16 112.9 13.0 92 837-928 1-92 (92)
29 PF09465 LBR_tudor: Lamin-B re 99.1 9.3E-11 2E-15 95.9 5.6 48 105-154 7-54 (55)
30 COG1121 ZnuC ABC-type Mn/Zn tr 98.7 2.2E-08 4.7E-13 109.5 5.9 109 1015-1125 19-176 (254)
31 COG1131 CcmA ABC-type multidru 98.6 6E-08 1.3E-12 110.0 7.4 109 1013-1123 18-171 (293)
32 COG1120 FepC ABC-type cobalami 98.5 1E-07 2.2E-12 104.8 6.8 108 1012-1120 14-170 (258)
33 COG0411 LivG ABC-type branched 98.5 1.1E-07 2.4E-12 102.2 4.2 105 1013-1128 17-189 (250)
34 cd03214 ABC_Iron-Siderophores_ 98.4 4.6E-07 9.9E-12 95.5 7.7 101 1015-1124 14-133 (180)
35 TIGR01188 drrA daunorubicin re 98.3 7.5E-07 1.6E-11 101.8 7.6 108 1014-1123 7-159 (302)
36 COG0410 LivF ABC-type branched 98.3 9.3E-07 2E-11 94.4 7.4 99 1014-1122 17-170 (237)
37 COG4152 ABC-type uncharacteriz 98.3 7.3E-07 1.6E-11 95.4 5.9 109 1013-1123 15-165 (300)
38 PRK13537 nodulation ABC transp 98.3 1E-06 2.2E-11 100.9 7.5 108 1014-1123 21-173 (306)
39 cd03216 ABC_Carb_Monos_I This 98.3 1.2E-06 2.6E-11 90.9 7.3 99 1015-1123 15-117 (163)
40 PRK13536 nodulation factor exp 98.3 9.9E-07 2.2E-11 102.2 7.1 108 1014-1123 55-207 (340)
41 COG4555 NatA ABC-type Na+ tran 98.3 1.2E-06 2.5E-11 91.4 6.3 104 1016-1121 18-166 (245)
42 cd03230 ABC_DR_subfamily_A Thi 98.3 1.6E-06 3.5E-11 90.8 7.2 97 1015-1124 15-131 (173)
43 cd03215 ABC_Carb_Monos_II This 98.3 1.6E-06 3.4E-11 91.6 7.2 98 1015-1123 15-139 (182)
44 cd03238 ABC_UvrA The excision 98.2 7.4E-07 1.6E-11 93.6 4.3 105 1014-1124 9-125 (176)
45 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.2 1.7E-06 3.6E-11 88.0 6.6 88 1018-1123 18-105 (144)
46 cd03228 ABCC_MRP_Like The MRP 98.2 2.3E-06 5.1E-11 89.3 7.5 94 1015-1123 17-131 (171)
47 TIGR01166 cbiO cobalt transpor 98.2 2.3E-06 4.9E-11 90.9 7.3 110 1014-1124 6-163 (190)
48 cd03263 ABC_subfamily_A The AB 98.2 2.4E-06 5.3E-11 92.8 7.4 108 1015-1124 17-169 (220)
49 TIGR03522 GldA_ABC_ATP gliding 98.2 2E-06 4.3E-11 98.2 6.9 107 1014-1122 16-167 (301)
50 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.2 2.4E-06 5.3E-11 92.6 7.3 107 1015-1123 19-175 (218)
51 TIGR02673 FtsE cell division A 98.2 2.4E-06 5.3E-11 92.4 7.2 109 1014-1123 16-172 (214)
52 TIGR01288 nodI ATP-binding ABC 98.2 2.5E-06 5.3E-11 97.6 7.3 108 1014-1123 18-170 (303)
53 cd03265 ABC_DrrA DrrA is the A 98.2 3E-06 6.4E-11 92.2 7.3 108 1014-1123 14-166 (220)
54 cd00267 ABC_ATPase ABC (ATP-bi 98.2 1.6E-06 3.5E-11 89.2 4.9 87 1026-1127 24-119 (157)
55 cd03269 ABC_putative_ATPase Th 98.2 4.3E-06 9.3E-11 90.2 8.4 107 1015-1123 15-163 (210)
56 cd03292 ABC_FtsE_transporter F 98.2 3.8E-06 8.1E-11 90.8 7.7 108 1015-1123 16-171 (214)
57 cd03213 ABCG_EPDR ABCG transpo 98.2 4E-06 8.7E-11 89.5 7.8 102 1014-1123 23-146 (194)
58 cd03225 ABC_cobalt_CbiO_domain 98.2 3.5E-06 7.7E-11 90.9 7.4 109 1014-1124 15-170 (211)
59 cd03268 ABC_BcrA_bacitracin_re 98.2 3.8E-06 8.2E-11 90.5 7.6 108 1014-1123 14-161 (208)
60 TIGR03608 L_ocin_972_ABC putat 98.2 3.5E-06 7.6E-11 90.5 7.2 35 1015-1050 13-47 (206)
61 cd03226 ABC_cobalt_CbiO_domain 98.1 2.5E-06 5.5E-11 91.7 6.0 107 1015-1123 15-161 (205)
62 COG4619 ABC-type uncharacteriz 98.1 6.2E-06 1.3E-10 83.7 8.2 111 1012-1123 15-168 (223)
63 cd03247 ABCC_cytochrome_bd The 98.1 3.4E-06 7.3E-11 88.7 6.7 97 1015-1123 17-133 (178)
64 cd03259 ABC_Carb_Solutes_like 98.1 3.9E-06 8.5E-11 90.7 7.3 107 1015-1123 15-165 (213)
65 PRK10584 putative ABC transpor 98.1 4.2E-06 9.1E-11 91.5 7.6 110 1015-1125 25-183 (228)
66 cd03223 ABCD_peroxisomal_ALDP 98.1 4.6E-06 9.9E-11 86.8 7.5 101 1015-1125 16-128 (166)
67 cd03293 ABC_NrtD_SsuB_transpor 98.1 3.5E-06 7.6E-11 91.6 6.8 109 1014-1124 18-167 (220)
68 cd03244 ABCC_MRP_domain2 Domai 98.1 5.3E-06 1.1E-10 90.2 8.2 108 1014-1123 18-174 (221)
69 TIGR02315 ABC_phnC phosphonate 98.1 4.1E-06 8.9E-11 92.4 7.4 108 1015-1123 17-180 (243)
70 cd03261 ABC_Org_Solvent_Resist 98.1 4.3E-06 9.2E-11 91.9 7.5 107 1015-1123 15-171 (235)
71 cd03258 ABC_MetN_methionine_tr 98.1 5.4E-06 1.2E-10 90.9 8.2 107 1015-1123 20-175 (233)
72 PRK09544 znuC high-affinity zi 98.1 5.6E-06 1.2E-10 92.1 8.4 108 1015-1124 19-156 (251)
73 cd03229 ABC_Class3 This class 98.1 3.5E-06 7.5E-11 88.7 6.4 96 1015-1123 15-135 (178)
74 PRK13540 cytochrome c biogenes 98.1 5.6E-06 1.2E-10 88.7 7.9 107 1015-1123 16-162 (200)
75 PRK11264 putative amino-acid A 98.1 5.6E-06 1.2E-10 91.8 8.2 36 1014-1050 17-52 (250)
76 cd03262 ABC_HisP_GlnQ_permease 98.1 6.8E-06 1.5E-10 88.7 8.6 108 1015-1123 15-170 (213)
77 cd03222 ABC_RNaseL_inhibitor T 98.1 4.9E-06 1.1E-10 87.6 7.2 82 1026-1123 24-106 (177)
78 TIGR00960 3a0501s02 Type II (G 98.1 5.3E-06 1.1E-10 89.9 7.7 109 1015-1125 18-175 (216)
79 cd03232 ABC_PDR_domain2 The pl 98.1 2.2E-06 4.7E-11 91.3 4.5 101 1015-1123 22-143 (192)
80 cd03235 ABC_Metallic_Cations A 98.1 4.8E-06 1E-10 90.1 7.0 107 1015-1123 14-167 (213)
81 PRK11247 ssuB aliphatic sulfon 98.1 5.1E-06 1.1E-10 92.7 7.4 108 1014-1123 26-168 (257)
82 cd03294 ABC_Pro_Gly_Bertaine T 98.1 4.7E-06 1E-10 93.6 7.1 107 1015-1123 39-195 (269)
83 cd03218 ABC_YhbG The ABC trans 98.1 5.2E-06 1.1E-10 91.0 7.3 108 1014-1123 14-168 (232)
84 PRK11300 livG leucine/isoleuci 98.1 6.1E-06 1.3E-10 91.8 7.9 36 1014-1050 19-54 (255)
85 PRK10247 putative ABC transpor 98.1 7.8E-06 1.7E-10 89.3 8.6 109 1014-1123 21-172 (225)
86 cd03246 ABCC_Protease_Secretio 98.1 5.4E-06 1.2E-10 86.8 6.9 95 1015-1124 17-132 (173)
87 cd03266 ABC_NatA_sodium_export 98.1 5.8E-06 1.2E-10 89.7 7.3 107 1015-1123 20-171 (218)
88 cd03219 ABC_Mj1267_LivG_branch 98.1 5.2E-06 1.1E-10 91.2 6.9 35 1015-1050 15-49 (236)
89 TIGR02211 LolD_lipo_ex lipopro 98.1 6.4E-06 1.4E-10 89.5 7.4 107 1015-1123 20-176 (221)
90 cd03301 ABC_MalK_N The N-termi 98.1 5.9E-06 1.3E-10 89.3 7.0 107 1015-1123 15-165 (213)
91 COG1119 ModF ABC-type molybden 98.1 4.4E-06 9.6E-11 90.0 5.8 36 1012-1048 43-78 (257)
92 cd03256 ABC_PhnC_transporter A 98.1 7E-06 1.5E-10 90.4 7.6 36 1014-1050 15-50 (241)
93 PF00005 ABC_tran: ABC transpo 98.1 3.1E-06 6.8E-11 84.6 4.2 32 1018-1050 3-34 (137)
94 PRK11248 tauB taurine transpor 98.1 9E-06 1.9E-10 90.6 8.3 108 1014-1123 15-163 (255)
95 cd03264 ABC_drug_resistance_li 98.0 7.2E-06 1.6E-10 88.5 7.1 106 1015-1123 15-165 (211)
96 TIGR01189 ccmA heme ABC export 98.0 1.1E-05 2.4E-10 86.3 8.3 108 1014-1123 14-162 (198)
97 PRK11629 lolD lipoprotein tran 98.0 7.1E-06 1.5E-10 90.1 6.9 108 1014-1123 23-180 (233)
98 TIGR01978 sufC FeS assembly AT 98.0 1E-05 2.2E-10 89.3 8.2 35 1015-1050 15-49 (243)
99 cd03267 ABC_NatA_like Similar 98.0 7E-06 1.5E-10 90.4 6.9 36 1014-1050 35-70 (236)
100 TIGR03864 PQQ_ABC_ATP ABC tran 98.0 7.2E-06 1.6E-10 90.2 6.9 109 1014-1124 15-168 (236)
101 cd03250 ABCC_MRP_domain1 Domai 98.0 6.9E-06 1.5E-10 88.2 6.6 107 1015-1123 20-162 (204)
102 PRK10908 cell division protein 98.0 8.6E-06 1.9E-10 88.7 7.3 108 1014-1123 16-172 (222)
103 TIGR01184 ntrCD nitrate transp 98.0 6.4E-06 1.4E-10 90.3 6.4 105 1018-1124 3-150 (230)
104 PRK13539 cytochrome c biogenes 98.0 8.4E-06 1.8E-10 87.9 7.1 108 1014-1123 16-162 (207)
105 TIGR02314 ABC_MetN D-methionin 98.0 6.4E-06 1.4E-10 95.5 6.5 108 1014-1123 19-175 (343)
106 PRK13538 cytochrome c biogenes 98.0 5.6E-06 1.2E-10 89.0 5.7 109 1015-1125 16-166 (204)
107 COG3839 MalK ABC-type sugar tr 98.0 8E-06 1.7E-10 93.3 7.0 33 1015-1048 18-50 (338)
108 PRK13647 cbiO cobalt transport 98.0 5.6E-06 1.2E-10 93.3 5.7 109 1014-1124 19-174 (274)
109 PRK13632 cbiO cobalt transport 98.0 7.8E-06 1.7E-10 91.9 6.8 108 1014-1123 23-177 (271)
110 cd03231 ABC_CcmA_heme_exporter 98.0 1.2E-05 2.7E-10 86.2 8.0 108 1014-1123 14-160 (201)
111 cd03278 ABC_SMC_barmotin Barmo 98.0 1.6E-05 3.5E-10 85.1 8.8 97 1029-1126 24-155 (197)
112 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.0 1.1E-05 2.3E-10 88.2 7.6 37 1013-1050 35-71 (224)
113 cd03296 ABC_CysA_sulfate_impor 98.0 1E-05 2.2E-10 89.2 7.4 108 1015-1124 17-172 (239)
114 TIGR03005 ectoine_ehuA ectoine 98.0 9.8E-06 2.1E-10 90.0 7.3 35 1015-1050 15-49 (252)
115 TIGR01277 thiQ thiamine ABC tr 98.0 8.4E-06 1.8E-10 88.2 6.6 106 1017-1123 15-163 (213)
116 PRK10895 lipopolysaccharide AB 98.0 1.1E-05 2.4E-10 89.0 7.7 108 1014-1123 17-172 (241)
117 COG1137 YhbG ABC-type (unclass 98.0 2.6E-06 5.5E-11 88.9 2.3 108 1012-1122 16-173 (243)
118 cd03260 ABC_PstB_phosphate_tra 98.0 1.6E-05 3.5E-10 86.8 8.6 108 1014-1123 14-176 (227)
119 cd03237 ABC_RNaseL_inhibitor_d 98.0 1.3E-05 2.8E-10 88.9 7.9 100 1026-1126 24-153 (246)
120 PRK09984 phosphonate/organopho 98.0 1.1E-05 2.4E-10 90.1 7.5 36 1014-1050 18-53 (262)
121 TIGR00968 3a0106s01 sulfate AB 98.0 9.2E-06 2E-10 89.5 6.6 109 1014-1123 14-165 (237)
122 TIGR03410 urea_trans_UrtE urea 98.0 1E-05 2.2E-10 88.5 6.9 35 1015-1050 15-49 (230)
123 PRK11650 ugpC glycerol-3-phosp 98.0 1.5E-05 3.3E-10 93.0 8.7 107 1014-1122 18-168 (356)
124 COG1116 TauB ABC-type nitrate/ 98.0 1.5E-05 3.3E-10 86.6 8.0 105 1014-1119 17-161 (248)
125 PRK11000 maltose/maltodextrin 98.0 1.2E-05 2.7E-10 94.3 8.0 108 1014-1123 17-168 (369)
126 PRK13635 cbiO cobalt transport 98.0 1.1E-05 2.4E-10 91.1 7.3 111 1014-1126 21-178 (279)
127 PRK13638 cbiO cobalt transport 98.0 1E-05 2.2E-10 91.1 6.8 36 1014-1050 15-50 (271)
128 cd03217 ABC_FeS_Assembly ABC-t 98.0 1.4E-05 3E-10 85.8 7.6 101 1015-1123 15-139 (200)
129 PRK11831 putative ABC transpor 98.0 1.1E-05 2.5E-10 90.5 7.2 109 1014-1123 21-178 (269)
130 cd03295 ABC_OpuCA_Osmoprotecti 98.0 1.2E-05 2.7E-10 88.7 7.4 107 1015-1123 16-170 (242)
131 PRK14275 phosphate ABC transpo 98.0 1.4E-05 2.9E-10 90.8 7.8 36 1014-1050 53-88 (286)
132 PRK13541 cytochrome c biogenes 98.0 1.7E-05 3.6E-10 84.7 8.1 103 1019-1123 19-158 (195)
133 PRK09493 glnQ glutamine ABC tr 98.0 1.3E-05 2.9E-10 88.3 7.5 108 1014-1123 15-171 (240)
134 cd03298 ABC_ThiQ_thiamine_tran 98.0 1.6E-05 3.5E-10 85.8 8.0 105 1018-1124 16-164 (211)
135 PRK13546 teichoic acids export 98.0 1.4E-05 3.1E-10 89.5 7.7 106 1015-1122 39-177 (264)
136 cd03245 ABCC_bacteriocin_expor 98.0 1.9E-05 4.2E-10 85.7 8.6 111 1014-1125 18-177 (220)
137 PRK10253 iron-enterobactin tra 98.0 1.3E-05 2.9E-10 89.8 7.4 109 1014-1124 21-179 (265)
138 COG3842 PotA ABC-type spermidi 98.0 1.1E-05 2.5E-10 92.6 6.8 111 992-1118 4-166 (352)
139 PRK13637 cbiO cobalt transport 98.0 1.2E-05 2.5E-10 91.3 6.9 108 1014-1123 21-179 (287)
140 PRK13641 cbiO cobalt transport 98.0 1.4E-05 3.1E-10 90.7 7.5 108 1014-1123 21-180 (287)
141 TIGR03411 urea_trans_UrtD urea 98.0 1.4E-05 3E-10 88.2 7.3 36 1014-1050 16-51 (242)
142 PRK14250 phosphate ABC transpo 98.0 1.5E-05 3.2E-10 88.1 7.4 109 1014-1123 17-166 (241)
143 cd03224 ABC_TM1139_LivF_branch 97.9 1.2E-05 2.6E-10 87.4 6.6 35 1015-1050 15-49 (222)
144 PRK13548 hmuV hemin importer A 97.9 1.3E-05 2.7E-10 89.6 6.8 36 1014-1050 16-51 (258)
145 TIGR03740 galliderm_ABC gallid 97.9 1.2E-05 2.7E-10 87.5 6.5 107 1015-1123 15-159 (223)
146 PRK11153 metN DL-methionine tr 97.9 1.2E-05 2.7E-10 93.4 6.9 108 1014-1123 19-175 (343)
147 PRK14245 phosphate ABC transpo 97.9 2.2E-05 4.8E-10 87.1 8.6 36 1014-1050 17-52 (250)
148 PRK13644 cbiO cobalt transport 97.9 1.4E-05 3E-10 90.1 7.0 107 1015-1123 17-171 (274)
149 PRK13633 cobalt transporter AT 97.9 1.3E-05 2.9E-10 90.5 6.9 112 1014-1126 24-182 (280)
150 PRK03695 vitamin B12-transport 97.9 1.5E-05 3.2E-10 88.5 7.0 108 1015-1124 11-169 (248)
151 cd03233 ABC_PDR_domain1 The pl 97.9 1.9E-05 4.2E-10 84.8 7.7 106 1015-1123 22-153 (202)
152 KOG4675 Uncharacterized conser 97.9 3.9E-06 8.4E-11 90.9 2.3 61 98-158 153-221 (273)
153 PRK13648 cbiO cobalt transport 97.9 1.6E-05 3.4E-10 89.4 7.2 110 1014-1125 23-179 (269)
154 COG4133 CcmA ABC-type transpor 97.9 2.1E-05 4.6E-10 81.6 7.4 34 1014-1050 18-51 (209)
155 PRK13547 hmuV hemin importer A 97.9 1.5E-05 3.3E-10 89.7 7.0 35 1015-1050 16-50 (272)
156 COG1118 CysA ABC-type sulfate/ 97.9 1.9E-05 4.1E-10 87.5 7.5 95 1018-1121 20-170 (345)
157 PRK15439 autoinducer 2 ABC tra 97.9 1.4E-05 3.1E-10 97.9 7.4 109 1014-1123 25-175 (510)
158 TIGR03265 PhnT2 putative 2-ami 97.9 1.3E-05 2.9E-10 93.4 6.7 107 1015-1122 19-168 (353)
159 PRK13646 cbiO cobalt transport 97.9 1.5E-05 3.2E-10 90.5 6.8 109 1014-1124 21-181 (286)
160 PRK10575 iron-hydroxamate tran 97.9 1.6E-05 3.4E-10 89.2 6.9 108 1014-1123 25-182 (265)
161 PRK15177 Vi polysaccharide exp 97.9 1.8E-05 3.8E-10 85.9 7.0 35 1015-1050 2-36 (213)
162 PRK14264 phosphate ABC transpo 97.9 2.9E-05 6.2E-10 88.9 9.1 52 991-1050 43-94 (305)
163 TIGR02770 nickel_nikD nickel i 97.9 1.3E-05 2.9E-10 87.8 6.1 34 1017-1051 3-36 (230)
164 TIGR01186 proV glycine betaine 97.9 1.6E-05 3.5E-10 92.8 7.0 108 1014-1123 7-164 (363)
165 PRK11124 artP arginine transpo 97.9 2.4E-05 5.2E-10 86.4 8.0 107 1015-1123 17-176 (242)
166 PRK09536 btuD corrinoid ABC tr 97.9 1.7E-05 3.7E-10 93.8 7.2 108 1014-1123 17-174 (402)
167 PRK13652 cbiO cobalt transport 97.9 1.7E-05 3.8E-10 89.4 7.0 108 1014-1123 18-172 (277)
168 TIGR02982 heterocyst_DevA ABC 97.9 2.3E-05 5E-10 85.3 7.7 107 1015-1123 20-176 (220)
169 TIGR00972 3a0107s01c2 phosphat 97.9 2.5E-05 5.5E-10 86.5 8.1 35 1015-1050 16-50 (247)
170 PRK11614 livF leucine/isoleuci 97.9 1.4E-05 3.1E-10 87.9 5.9 36 1014-1050 19-54 (237)
171 PRK10419 nikE nickel transport 97.9 2.2E-05 4.8E-10 88.1 7.5 109 1013-1122 25-185 (268)
172 cd03257 ABC_NikE_OppD_transpor 97.9 2.6E-05 5.7E-10 85.0 7.9 36 1014-1050 19-54 (228)
173 PRK13543 cytochrome c biogenes 97.9 2.1E-05 4.5E-10 85.3 7.0 111 1014-1125 25-174 (214)
174 TIGR03873 F420-0_ABC_ATP propo 97.9 2E-05 4.3E-10 87.8 7.0 36 1014-1050 15-50 (256)
175 PRK13640 cbiO cobalt transport 97.9 2.1E-05 4.5E-10 89.0 7.2 107 1015-1123 22-178 (282)
176 PRK10771 thiQ thiamine transpo 97.9 2.6E-05 5.6E-10 85.6 7.7 104 1018-1123 17-164 (232)
177 TIGR02142 modC_ABC molybdenum 97.9 1.7E-05 3.7E-10 92.6 6.6 105 1018-1123 15-166 (354)
178 TIGR03258 PhnT 2-aminoethylpho 97.9 2.2E-05 4.7E-10 91.9 7.3 36 1014-1050 19-54 (362)
179 cd03252 ABCC_Hemolysin The ABC 97.9 2.7E-05 5.9E-10 85.6 7.7 36 1014-1050 16-51 (237)
180 PRK11432 fbpC ferric transport 97.9 2.4E-05 5.2E-10 91.2 7.7 51 992-1050 5-55 (351)
181 PRK15056 manganese/iron transp 97.9 1.3E-05 2.7E-10 90.3 5.2 109 1014-1124 21-178 (272)
182 PRK10744 pstB phosphate transp 97.9 2.9E-05 6.2E-10 86.8 8.0 36 1014-1050 27-62 (260)
183 TIGR02323 CP_lyasePhnK phospho 97.9 2.2E-05 4.8E-10 87.2 7.0 36 1014-1050 17-52 (253)
184 PRK11144 modC molybdate transp 97.9 2.9E-05 6.3E-10 90.7 8.3 104 1018-1123 16-163 (352)
185 PRK11231 fecE iron-dicitrate t 97.9 2.3E-05 5E-10 87.3 7.1 108 1015-1123 17-173 (255)
186 TIGR02769 nickel_nikE nickel i 97.9 2.5E-05 5.5E-10 87.5 7.4 37 1013-1050 24-60 (265)
187 cd03297 ABC_ModC_molybdenum_tr 97.9 2.2E-05 4.7E-10 85.0 6.7 103 1018-1123 16-166 (214)
188 PRK14237 phosphate transporter 97.9 2.9E-05 6.2E-10 87.2 7.8 37 1014-1051 34-70 (267)
189 PRK13649 cbiO cobalt transport 97.9 2.5E-05 5.5E-10 88.2 7.4 107 1015-1123 22-180 (280)
190 cd03300 ABC_PotA_N PotA is an 97.9 3E-05 6.5E-10 85.1 7.8 107 1015-1123 15-165 (232)
191 PRK10938 putative molybdenum t 97.9 2.4E-05 5.1E-10 95.5 7.6 108 1015-1124 18-171 (490)
192 COG1134 TagH ABC-type polysacc 97.9 2.2E-05 4.7E-10 84.9 6.3 100 1013-1121 40-181 (249)
193 PRK14242 phosphate transporter 97.9 3.6E-05 7.9E-10 85.5 8.4 36 1014-1050 20-55 (253)
194 PRK10619 histidine/lysine/argi 97.9 2.1E-05 4.5E-10 87.8 6.5 36 1014-1050 19-54 (257)
195 PRK10851 sulfate/thiosulfate t 97.9 2.1E-05 4.6E-10 91.8 6.8 36 1014-1050 16-51 (353)
196 PRK15112 antimicrobial peptide 97.9 1.9E-05 4E-10 88.7 6.1 37 1014-1051 27-63 (267)
197 PRK14268 phosphate ABC transpo 97.9 2.8E-05 6E-10 86.8 7.4 36 1014-1050 26-61 (258)
198 PRK09452 potA putrescine/sperm 97.8 2.2E-05 4.7E-10 92.2 6.8 122 992-1122 13-178 (375)
199 COG0396 sufC Cysteine desulfur 97.8 1.8E-05 3.9E-10 84.5 5.4 35 1014-1049 18-52 (251)
200 PRK13636 cbiO cobalt transport 97.8 2.7E-05 5.9E-10 88.2 7.3 109 1014-1124 20-177 (283)
201 cd03251 ABCC_MsbA MsbA is an e 97.8 2.9E-05 6.4E-10 85.1 7.4 37 1014-1051 16-52 (234)
202 PRK13545 tagH teichoic acids e 97.8 2.7E-05 5.9E-10 93.7 7.6 108 1014-1123 38-178 (549)
203 cd03254 ABCC_Glucan_exporter_l 97.8 3.2E-05 7E-10 84.5 7.7 36 1014-1050 17-52 (229)
204 PRK10070 glycine betaine trans 97.8 2.4E-05 5.1E-10 92.5 6.9 107 1015-1123 43-199 (400)
205 PRK14269 phosphate ABC transpo 97.8 3.8E-05 8.2E-10 85.1 7.9 36 1014-1050 16-51 (246)
206 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.8 3.2E-05 6.9E-10 85.2 7.2 35 1015-1050 18-52 (238)
207 cd03236 ABC_RNaseL_inhibitor_d 97.8 3.9E-05 8.5E-10 85.5 7.9 25 1026-1050 25-49 (255)
208 PRK10418 nikD nickel transport 97.8 3.2E-05 6.9E-10 86.1 7.2 35 1015-1050 18-52 (254)
209 COG1127 Ttg2A ABC-type transpo 97.8 3.4E-05 7.4E-10 83.0 6.9 114 1012-1126 20-183 (263)
210 PRK11607 potG putrescine trans 97.8 4E-05 8.7E-10 90.1 8.3 51 993-1051 19-69 (377)
211 PRK14235 phosphate transporter 97.8 4.8E-05 1E-09 85.4 8.5 37 1014-1051 33-69 (267)
212 PRK13650 cbiO cobalt transport 97.8 3.1E-05 6.8E-10 87.5 7.0 107 1015-1123 22-175 (279)
213 cd03248 ABCC_TAP TAP, the Tran 97.8 4.3E-05 9.4E-10 83.4 7.9 36 1014-1050 28-63 (226)
214 cd03253 ABCC_ATM1_transporter 97.8 5E-05 1.1E-09 83.4 8.4 36 1015-1051 16-51 (236)
215 cd03234 ABCG_White The White s 97.8 2.9E-05 6.3E-10 84.8 6.5 36 1015-1051 22-57 (226)
216 PRK14241 phosphate transporter 97.8 3.9E-05 8.4E-10 85.6 7.6 35 1015-1050 19-53 (258)
217 PRK13639 cbiO cobalt transport 97.8 2.7E-05 5.8E-10 87.9 6.3 35 1015-1050 17-51 (275)
218 COG0488 Uup ATPase components 97.8 0.00036 7.9E-09 85.1 16.3 107 1013-1121 335-472 (530)
219 PRK14273 phosphate ABC transpo 97.8 4.4E-05 9.5E-10 85.0 7.9 50 993-1050 7-56 (254)
220 PRK14254 phosphate ABC transpo 97.8 3.7E-05 8E-10 87.2 7.3 36 1014-1050 53-88 (285)
221 PRK11701 phnK phosphonate C-P 97.8 3.2E-05 7E-10 86.2 6.6 109 1014-1123 20-186 (258)
222 PRK13651 cobalt transporter AT 97.8 4E-05 8.7E-10 87.7 7.4 35 1015-1050 22-56 (305)
223 COG4674 Uncharacterized ABC-ty 97.8 1.4E-05 3E-10 83.1 3.1 112 1014-1128 19-187 (249)
224 PRK14244 phosphate ABC transpo 97.8 5.6E-05 1.2E-09 83.9 8.3 35 1015-1050 20-54 (251)
225 COG1126 GlnQ ABC-type polar am 97.8 7.4E-05 1.6E-09 79.3 8.4 108 1013-1122 15-170 (240)
226 PRK10938 putative molybdenum t 97.8 2.1E-05 4.6E-10 95.9 5.1 36 1014-1050 274-309 (490)
227 PRK14261 phosphate ABC transpo 97.8 6.2E-05 1.3E-09 83.7 8.4 36 1014-1050 20-55 (253)
228 PRK13549 xylose transporter AT 97.8 3.5E-05 7.6E-10 94.4 6.8 110 1014-1125 19-180 (506)
229 TIGR02324 CP_lyasePhnL phospho 97.8 6.5E-05 1.4E-09 81.9 8.1 36 1014-1050 22-57 (224)
230 PRK10762 D-ribose transporter 97.8 3.5E-05 7.5E-10 94.4 6.6 109 1014-1124 18-177 (501)
231 PRK14274 phosphate ABC transpo 97.7 7.9E-05 1.7E-09 83.2 8.9 36 1014-1050 26-61 (259)
232 PRK09700 D-allose transporter 97.7 3.8E-05 8.1E-10 94.3 6.8 108 1014-1123 19-180 (510)
233 PRK14265 phosphate ABC transpo 97.7 5.4E-05 1.2E-09 85.3 7.5 36 1014-1050 34-69 (274)
234 PRK10636 putative ABC transpor 97.7 5.1E-05 1.1E-09 95.4 8.0 36 1014-1050 15-50 (638)
235 PRK14251 phosphate ABC transpo 97.7 5.2E-05 1.1E-09 84.2 7.2 36 1015-1051 19-54 (251)
236 PRK14248 phosphate ABC transpo 97.7 7.4E-05 1.6E-09 83.9 8.5 51 992-1050 20-70 (268)
237 PRK13642 cbiO cobalt transport 97.7 5.7E-05 1.2E-09 85.3 7.6 110 1015-1125 22-177 (277)
238 PRK14256 phosphate ABC transpo 97.7 6.4E-05 1.4E-09 83.5 7.9 36 1014-1050 18-53 (252)
239 TIGR03269 met_CoM_red_A2 methy 97.7 5.7E-05 1.2E-09 92.9 8.2 36 1015-1051 15-50 (520)
240 PRK14262 phosphate ABC transpo 97.7 6.8E-05 1.5E-09 83.2 8.0 36 1014-1050 17-52 (250)
241 PRK14247 phosphate ABC transpo 97.7 6.6E-05 1.4E-09 83.3 7.9 36 1014-1050 17-52 (250)
242 PRK14239 phosphate transporter 97.7 6.9E-05 1.5E-09 83.2 8.0 36 1014-1050 19-54 (252)
243 PRK13645 cbiO cobalt transport 97.7 3E-05 6.5E-10 88.0 5.2 35 1015-1050 26-60 (289)
244 TIGR03771 anch_rpt_ABC anchore 97.7 5.5E-05 1.2E-09 82.6 6.9 98 1026-1124 5-149 (223)
245 PRK14267 phosphate ABC transpo 97.7 7.2E-05 1.6E-09 83.2 7.9 36 1014-1050 18-53 (253)
246 TIGR01257 rim_protein retinal- 97.7 4E-05 8.6E-10 105.1 6.9 108 1014-1123 1953-2105(2272)
247 COG1129 MglA ABC-type sugar tr 97.7 7.8E-05 1.7E-09 89.0 8.5 99 1014-1123 22-180 (500)
248 PRK14259 phosphate ABC transpo 97.7 7.9E-05 1.7E-09 83.8 8.3 36 1014-1050 27-62 (269)
249 PRK15064 ABC transporter ATP-b 97.7 6.5E-05 1.4E-09 92.6 8.2 35 1015-1050 16-50 (530)
250 PRK13631 cbiO cobalt transport 97.7 4.9E-05 1.1E-09 87.6 6.4 57 991-1050 19-75 (320)
251 PRK14260 phosphate ABC transpo 97.7 9.6E-05 2.1E-09 82.5 8.5 35 1015-1050 22-56 (259)
252 PRK13634 cbiO cobalt transport 97.7 7.7E-05 1.7E-09 84.8 7.8 109 1014-1124 21-181 (290)
253 PRK15079 oligopeptide ABC tran 97.7 5.3E-05 1.1E-09 87.7 6.5 108 1014-1123 35-196 (331)
254 cd03289 ABCC_CFTR2 The CFTR su 97.7 0.00012 2.6E-09 82.6 9.1 111 1014-1125 18-175 (275)
255 COG3638 ABC-type phosphate/pho 97.7 4.7E-05 1E-09 81.7 5.5 109 1013-1122 17-181 (258)
256 KOG0219 Mismatch repair ATPase 97.7 4.7E-06 1E-10 101.0 -2.3 128 997-1128 627-755 (902)
257 PRK14253 phosphate ABC transpo 97.7 0.00013 2.7E-09 81.0 9.1 36 1014-1050 17-52 (249)
258 PRK13409 putative ATPase RIL; 97.7 0.00011 2.4E-09 91.3 9.4 111 1013-1125 87-249 (590)
259 PRK14271 phosphate ABC transpo 97.7 9.6E-05 2.1E-09 83.4 8.1 37 1013-1050 34-70 (276)
260 PRK10636 putative ABC transpor 97.7 0.0011 2.3E-08 83.7 18.2 110 1014-1125 326-467 (638)
261 CHL00131 ycf16 sulfate ABC tra 97.7 7.9E-05 1.7E-09 82.7 7.3 36 1014-1050 21-56 (252)
262 TIGR03719 ABC_ABC_ChvD ATP-bin 97.7 9.7E-05 2.1E-09 91.5 8.8 111 1014-1126 336-481 (552)
263 PRK11819 putative ABC transpor 97.7 0.0001 2.2E-09 91.4 8.9 112 1014-1127 338-484 (556)
264 COG1136 SalX ABC-type antimicr 97.7 8.2E-05 1.8E-09 80.6 7.0 111 1014-1126 19-180 (226)
265 PRK10982 galactose/methyl gala 97.7 5.7E-05 1.2E-09 92.3 6.5 108 1015-1124 13-170 (491)
266 PRK11819 putative ABC transpor 97.7 7.6E-05 1.7E-09 92.5 7.7 37 1014-1051 21-57 (556)
267 PRK14240 phosphate transporter 97.7 9.6E-05 2.1E-09 82.0 7.7 35 1015-1050 18-52 (250)
268 TIGR03415 ABC_choXWV_ATP choli 97.7 8.7E-05 1.9E-09 87.2 7.7 36 1014-1050 38-73 (382)
269 PRK14270 phosphate ABC transpo 97.7 0.00011 2.5E-09 81.5 8.3 35 1015-1050 19-53 (251)
270 PRK14263 phosphate ABC transpo 97.6 0.0001 2.2E-09 82.5 7.9 36 1014-1050 22-57 (261)
271 PRK14246 phosphate ABC transpo 97.6 8.1E-05 1.8E-09 83.1 6.8 36 1014-1050 24-59 (257)
272 cd03369 ABCC_NFT1 Domain 2 of 97.6 0.00012 2.6E-09 78.8 7.7 108 1014-1124 22-161 (207)
273 cd03299 ABC_ModC_like Archeal 97.6 8.3E-05 1.8E-09 81.8 6.6 107 1015-1123 14-164 (235)
274 PRK13409 putative ATPase RIL; 97.6 0.00011 2.3E-09 91.5 8.3 110 1016-1127 355-492 (590)
275 TIGR03269 met_CoM_red_A2 methy 97.6 9.6E-05 2.1E-09 90.9 7.8 110 1014-1125 298-464 (520)
276 COG1122 CbiO ABC-type cobalt t 97.6 5.2E-05 1.1E-09 83.2 4.9 34 1014-1048 18-51 (235)
277 COG4604 CeuD ABC-type enteroch 97.6 9.9E-05 2.1E-09 77.1 6.5 39 1012-1051 13-51 (252)
278 PRK15064 ABC transporter ATP-b 97.6 0.00011 2.4E-09 90.5 8.3 110 1014-1125 333-475 (530)
279 PRK14255 phosphate ABC transpo 97.6 0.00013 2.8E-09 81.0 8.0 36 1014-1050 19-54 (252)
280 TIGR01257 rim_protein retinal- 97.6 8.8E-05 1.9E-09 101.8 7.6 111 1013-1125 943-1098(2272)
281 cd03291 ABCC_CFTR1 The CFTR su 97.6 0.00018 3.8E-09 81.5 8.9 121 992-1123 38-194 (282)
282 PRK14249 phosphate ABC transpo 97.6 0.00013 2.8E-09 81.0 7.7 35 1015-1050 19-53 (251)
283 PRK15439 autoinducer 2 ABC tra 97.6 8.3E-05 1.8E-09 91.2 6.6 110 1016-1126 279-441 (510)
284 KOG0062 ATPase component of AB 97.6 6.6E-05 1.4E-09 88.0 5.3 107 1013-1128 93-235 (582)
285 PRK14243 phosphate transporter 97.6 0.00017 3.8E-09 80.8 8.5 35 1015-1050 25-59 (264)
286 PRK09580 sufC cysteine desulfu 97.6 0.00015 3.1E-09 80.4 7.8 35 1015-1050 16-50 (248)
287 cd03290 ABCC_SUR1_N The SUR do 97.6 0.00014 3E-09 79.0 7.5 35 1015-1050 16-50 (218)
288 PRK15134 microcin C ABC transp 97.6 7.6E-05 1.6E-09 92.0 5.9 36 1014-1050 23-58 (529)
289 cd03288 ABCC_SUR2 The SUR doma 97.6 0.0002 4.4E-09 79.9 8.7 36 1014-1050 35-70 (257)
290 PRK11288 araG L-arabinose tran 97.6 8.6E-05 1.9E-09 90.9 6.3 109 1014-1124 18-176 (501)
291 PRK14252 phosphate ABC transpo 97.6 0.00015 3.2E-09 81.3 7.7 36 1014-1050 30-65 (265)
292 PRK14266 phosphate ABC transpo 97.6 0.00019 4E-09 79.7 8.4 35 1015-1050 18-52 (250)
293 PRK13643 cbiO cobalt transport 97.6 0.00013 2.9E-09 82.8 7.3 36 1014-1050 20-55 (288)
294 PRK14238 phosphate transporter 97.5 0.00017 3.7E-09 81.1 7.8 37 1014-1051 38-74 (271)
295 cd03239 ABC_SMC_head The struc 97.5 0.00017 3.6E-09 76.1 7.2 95 1029-1125 24-135 (178)
296 PRK14272 phosphate ABC transpo 97.5 0.00019 4.1E-09 79.7 8.0 36 1014-1050 18-53 (252)
297 TIGR02633 xylG D-xylose ABC tr 97.5 0.0001 2.2E-09 90.2 6.2 111 1014-1126 15-179 (500)
298 PRK09700 D-allose transporter 97.5 0.00016 3.5E-09 88.8 7.9 108 1015-1124 278-445 (510)
299 PRK14236 phosphate transporter 97.5 0.0002 4.2E-09 80.7 7.8 36 1014-1050 39-74 (272)
300 TIGR02633 xylG D-xylose ABC tr 97.5 0.00017 3.6E-09 88.4 7.6 35 1015-1050 275-309 (500)
301 PRK15134 microcin C ABC transp 97.5 0.00014 3.1E-09 89.6 6.9 109 1014-1124 300-461 (529)
302 TIGR03719 ABC_ABC_ChvD ATP-bin 97.5 0.00018 3.9E-09 89.1 7.8 36 1014-1050 19-54 (552)
303 PRK11147 ABC transporter ATPas 97.5 0.00018 3.8E-09 90.7 7.8 36 1014-1050 17-52 (635)
304 COG2274 SunT ABC-type bacterio 97.5 0.0007 1.5E-08 85.3 13.0 41 1013-1062 486-526 (709)
305 PRK13549 xylose transporter AT 97.5 0.00017 3.7E-09 88.4 7.4 35 1015-1050 277-311 (506)
306 COG3840 ThiQ ABC-type thiamine 97.5 0.00016 3.4E-09 74.7 5.9 88 1026-1121 24-162 (231)
307 PRK14257 phosphate ABC transpo 97.5 0.00024 5.3E-09 82.2 8.2 130 992-1127 79-264 (329)
308 PRK10261 glutathione transport 97.5 0.00017 3.6E-09 90.7 7.3 109 1014-1124 338-499 (623)
309 PRK11288 araG L-arabinose tran 97.5 0.00019 4.2E-09 87.9 7.6 35 1015-1050 268-302 (501)
310 PLN03073 ABC transporter F fam 97.5 0.0002 4.4E-09 90.8 7.8 108 1014-1123 523-662 (718)
311 cd03274 ABC_SMC4_euk Eukaryoti 97.5 0.00041 8.8E-09 75.3 9.0 23 1028-1050 26-48 (212)
312 cd03279 ABC_sbcCD SbcCD and ot 97.5 9.8E-05 2.1E-09 80.0 4.2 33 1017-1049 18-50 (213)
313 PRK14258 phosphate ABC transpo 97.5 0.00029 6.3E-09 78.8 8.1 35 1015-1050 22-56 (261)
314 PLN03211 ABC transporter G-25; 97.4 0.00015 3.3E-09 91.2 6.3 109 1014-1124 82-242 (659)
315 PRK10762 D-ribose transporter 97.4 0.00022 4.8E-09 87.4 7.5 35 1015-1050 267-301 (501)
316 PRK11022 dppD dipeptide transp 97.4 0.0002 4.4E-09 82.7 6.7 109 1014-1123 21-188 (326)
317 PRK11147 ABC transporter ATPas 97.4 0.00017 3.7E-09 90.8 6.5 108 1014-1123 333-475 (635)
318 COG4586 ABC-type uncharacteriz 97.4 0.00028 6.1E-09 77.2 7.2 33 1016-1049 40-72 (325)
319 cd03272 ABC_SMC3_euk Eukaryoti 97.4 0.00032 6.9E-09 77.4 7.8 23 1028-1050 24-46 (243)
320 PRK10982 galactose/methyl gala 97.4 0.00015 3.2E-09 88.6 5.7 35 1015-1050 263-297 (491)
321 PRK15093 antimicrobial peptide 97.4 0.00023 4.9E-09 82.5 6.8 36 1014-1050 21-56 (330)
322 cd03270 ABC_UvrA_I The excisio 97.4 0.0004 8.6E-09 76.1 8.1 31 1014-1045 9-39 (226)
323 COG1125 OpuBA ABC-type proline 97.4 0.00018 4E-09 77.9 5.2 109 1013-1122 14-169 (309)
324 TIGR01842 type_I_sec_PrtD type 97.4 0.0013 2.8E-08 81.5 13.4 52 993-1050 316-367 (544)
325 TIGR00954 3a01203 Peroxysomal 97.4 0.00024 5.1E-09 89.8 6.8 108 1014-1123 466-617 (659)
326 PRK11308 dppF dipeptide transp 97.4 0.00033 7.1E-09 81.1 7.1 36 1014-1050 29-64 (327)
327 PRK10261 glutathione transport 97.3 0.00042 9.2E-09 87.1 8.3 109 1014-1124 30-204 (623)
328 KOG0927 Predicted transporter 97.3 0.00025 5.5E-09 83.7 5.4 110 1015-1126 405-547 (614)
329 TIGR02204 MsbA_rel ABC transpo 97.3 0.0018 3.9E-08 80.7 13.4 109 1013-1123 353-511 (576)
330 COG3845 ABC-type uncharacteriz 97.3 0.00041 8.9E-09 81.6 7.0 41 1014-1063 17-58 (501)
331 PRK13657 cyclic beta-1,2-gluca 97.3 0.0025 5.3E-08 79.8 14.3 113 1014-1127 349-510 (588)
332 PRK10522 multidrug transporter 97.3 0.00066 1.4E-08 84.1 9.1 111 1014-1126 337-487 (547)
333 PRK10535 macrolide transporter 97.3 0.0004 8.6E-09 87.7 7.3 107 1015-1122 23-178 (648)
334 COG1117 PstB ABC-type phosphat 97.3 0.00091 2E-08 71.0 8.6 37 1013-1050 20-56 (253)
335 TIGR03797 NHPM_micro_ABC2 NHPM 97.3 0.0033 7.3E-08 80.1 15.5 36 1013-1049 466-501 (686)
336 COG0488 Uup ATPase components 97.3 0.0006 1.3E-08 83.2 8.3 34 1014-1048 17-50 (530)
337 COG4778 PhnL ABC-type phosphon 97.3 0.00031 6.7E-09 71.7 4.7 107 1014-1121 25-185 (235)
338 PRK10789 putative multidrug tr 97.2 0.0008 1.7E-08 83.8 9.3 36 1013-1049 328-363 (569)
339 TIGR01192 chvA glucan exporter 97.2 0.0033 7.2E-08 78.5 14.6 35 1014-1049 349-383 (585)
340 COG4559 ABC-type hemin transpo 97.2 0.00025 5.3E-09 75.0 3.7 35 1013-1048 14-48 (259)
341 smart00382 AAA ATPases associa 97.2 0.00052 1.1E-08 67.0 5.9 25 1027-1051 2-26 (148)
342 TIGR01187 potA spermidine/putr 97.2 0.00035 7.6E-09 80.8 5.3 91 1032-1123 1-135 (325)
343 PLN03073 ABC transporter F fam 97.2 0.00042 9.2E-09 87.9 6.4 35 1014-1049 191-225 (718)
344 TIGR03375 type_I_sec_LssB type 97.2 0.00097 2.1E-08 85.0 9.3 35 1013-1048 478-512 (694)
345 PRK10790 putative multidrug tr 97.2 0.0039 8.5E-08 78.1 14.3 34 1014-1048 355-388 (592)
346 COG1101 PhnK ABC-type uncharac 97.2 0.00074 1.6E-08 71.7 6.5 35 1013-1048 19-53 (263)
347 cd03275 ABC_SMC1_euk Eukaryoti 97.1 0.0013 2.8E-08 73.1 8.7 24 1028-1051 23-46 (247)
348 cd03277 ABC_SMC5_euk Eukaryoti 97.1 0.0014 3E-08 71.2 8.7 24 1028-1051 24-47 (213)
349 TIGR00955 3a01204 The Eye Pigm 97.1 0.00056 1.2E-08 85.9 6.5 112 1013-1127 38-205 (617)
350 PRK11174 cysteine/glutathione 97.1 0.00082 1.8E-08 84.0 7.9 36 1013-1049 363-398 (588)
351 cd03276 ABC_SMC6_euk Eukaryoti 97.1 0.00064 1.4E-08 73.0 6.0 23 1028-1050 22-44 (198)
352 COG4988 CydD ABC-type transpor 97.1 0.0039 8.5E-08 75.1 13.0 99 939-1048 269-368 (559)
353 smart00333 TUDOR Tudor domain. 97.1 0.00054 1.2E-08 58.0 4.1 43 105-149 4-47 (57)
354 PRK09473 oppD oligopeptide tra 97.1 0.00089 1.9E-08 77.6 7.3 37 1014-1051 30-66 (330)
355 cd03271 ABC_UvrA_II The excisi 97.1 0.0014 3.1E-08 73.3 8.6 38 1017-1055 12-49 (261)
356 TIGR03796 NHPM_micro_ABC1 NHPM 97.1 0.00087 1.9E-08 85.7 7.6 110 1013-1124 492-651 (710)
357 cd03240 ABC_Rad50 The catalyti 97.1 0.0006 1.3E-08 73.5 5.1 22 1029-1050 24-45 (204)
358 COG2884 FtsE Predicted ATPase 97.1 0.0013 2.8E-08 68.7 7.2 36 1015-1051 17-52 (223)
359 PRK11160 cysteine/glutathione 97.1 0.0015 3.2E-08 81.5 9.2 110 1013-1124 353-511 (574)
360 TIGR02203 MsbA_lipidA lipid A 97.1 0.0015 3.2E-08 81.3 9.1 113 1013-1126 345-507 (571)
361 TIGR01194 cyc_pep_trnsptr cycl 97.0 0.0011 2.4E-08 82.3 7.9 109 1014-1124 356-506 (555)
362 PF13555 AAA_29: P-loop contai 97.0 0.00068 1.5E-08 58.5 3.8 33 1017-1051 15-47 (62)
363 PTZ00243 ABC transporter; Prov 97.0 0.0014 3E-08 90.1 8.9 112 1013-1126 673-820 (1560)
364 TIGR02857 CydD thiol reductant 97.0 0.0018 4E-08 79.8 9.1 35 1014-1049 336-370 (529)
365 KOG0059 Lipid exporter ABCA1 a 97.0 0.00062 1.3E-08 88.7 5.1 99 1016-1123 581-733 (885)
366 TIGR01193 bacteriocin_ABC ABC- 97.0 0.0055 1.2E-07 78.4 13.5 36 1014-1050 488-523 (708)
367 COG4615 PvdE ABC-type sideroph 96.9 0.0057 1.2E-07 70.1 11.4 115 992-1121 321-481 (546)
368 KOG0927 Predicted transporter 96.9 0.00091 2E-08 79.2 5.3 38 1017-1063 92-129 (614)
369 PRK14722 flhF flagellar biosyn 96.9 0.0021 4.5E-08 75.1 8.2 84 1027-1118 137-227 (374)
370 TIGR00958 3a01208 Conjugate Tr 96.9 0.0019 4E-08 82.6 8.6 37 1013-1050 494-530 (711)
371 TIGR01846 type_I_sec_HlyB type 96.9 0.0014 3.1E-08 83.5 7.5 36 1014-1050 471-506 (694)
372 TIGR02868 CydC thiol reductant 96.9 0.0024 5.1E-08 78.9 9.2 34 1014-1048 349-382 (529)
373 PLN03140 ABC transporter G fam 96.9 0.0017 3.6E-08 88.5 8.3 111 1014-1125 894-1056(1470)
374 COG4148 ModC ABC-type molybdat 96.9 0.00082 1.8E-08 73.8 4.2 91 1027-1117 24-157 (352)
375 cd04508 TUDOR Tudor domains ar 96.9 0.0011 2.4E-08 54.0 4.1 42 107-149 1-43 (48)
376 TIGR01271 CFTR_protein cystic 96.9 0.0014 3.1E-08 89.8 7.4 112 1014-1127 440-587 (1490)
377 COG4525 TauB ABC-type taurine 96.8 0.0021 4.5E-08 67.4 6.4 34 1015-1049 20-53 (259)
378 smart00743 Agenet Tudor-like d 96.8 0.0014 3.1E-08 56.4 4.5 36 105-141 4-39 (61)
379 COG4178 ABC-type uncharacteriz 96.8 0.018 3.9E-07 70.6 15.4 25 1026-1050 418-442 (604)
380 PRK06995 flhF flagellar biosyn 96.8 0.0026 5.7E-08 76.6 7.8 84 1027-1118 256-346 (484)
381 PTZ00265 multidrug resistance 96.8 0.0029 6.3E-08 86.4 9.0 36 1014-1050 399-434 (1466)
382 TIGR00956 3a01205 Pleiotropic 96.8 0.0013 2.9E-08 89.4 5.6 34 1016-1050 77-110 (1394)
383 PRK14721 flhF flagellar biosyn 96.8 0.0026 5.6E-08 75.5 7.3 85 1027-1118 191-281 (420)
384 PRK11176 lipid transporter ATP 96.7 0.0046 1E-07 77.2 9.9 37 1013-1050 356-392 (582)
385 COG1124 DppF ABC-type dipeptid 96.7 0.0042 9E-08 67.5 8.0 36 1014-1050 21-56 (252)
386 KOG0064 Peroxisomal long-chain 96.7 0.024 5.3E-07 67.2 14.7 37 1013-1050 495-531 (728)
387 PLN03140 ABC transporter G fam 96.7 0.00098 2.1E-08 90.6 3.7 34 1016-1050 181-214 (1470)
388 COG3910 Predicted ATPase [Gene 96.7 0.0025 5.4E-08 66.4 5.7 32 1097-1128 137-168 (233)
389 cd03273 ABC_SMC2_euk Eukaryoti 96.7 0.0056 1.2E-07 68.1 8.9 23 1028-1050 26-48 (251)
390 COG4107 PhnK ABC-type phosphon 96.7 0.0041 8.8E-08 63.9 6.9 35 1087-1121 149-184 (258)
391 KOG0061 Transporter, ABC super 96.7 0.0024 5.3E-08 79.8 6.5 112 1013-1125 43-207 (613)
392 TIGR00956 3a01205 Pleiotropic 96.7 0.0023 4.9E-08 87.2 6.7 38 1013-1051 776-813 (1394)
393 COG2401 ABC-type ATPase fused 96.6 0.0039 8.6E-08 71.7 7.3 111 1014-1127 397-546 (593)
394 PRK12727 flagellar biosynthesi 96.6 0.0042 9.2E-08 75.0 7.9 88 1027-1119 350-441 (559)
395 KOG0057 Mitochondrial Fe/S clu 96.6 0.022 4.8E-07 68.1 13.4 106 1014-1120 366-519 (591)
396 COG4138 BtuD ABC-type cobalami 96.5 0.00097 2.1E-08 68.4 1.2 24 1027-1050 25-48 (248)
397 TIGR00957 MRP_assoc_pro multi 96.5 0.029 6.2E-07 77.5 15.7 113 1013-1127 651-799 (1522)
398 PRK14723 flhF flagellar biosyn 96.5 0.0053 1.1E-07 77.3 7.8 85 1027-1119 185-276 (767)
399 COG4598 HisP ABC-type histidin 96.5 0.0049 1.1E-07 63.7 5.9 36 1015-1051 21-56 (256)
400 PRK13695 putative NTPase; Prov 96.5 0.0057 1.2E-07 64.1 6.7 20 1030-1049 3-22 (174)
401 COG1132 MdlB ABC-type multidru 96.4 0.0057 1.2E-07 76.2 7.6 109 1013-1123 342-500 (567)
402 KOG0060 Long-chain acyl-CoA tr 96.4 0.0057 1.2E-07 73.2 7.0 38 1012-1050 447-484 (659)
403 PF09038 53-BP1_Tudor: Tumour 96.4 0.0045 9.7E-08 59.7 4.7 43 102-145 1-43 (122)
404 COG4608 AppF ABC-type oligopep 96.3 0.0055 1.2E-07 67.8 5.7 99 1014-1121 27-142 (268)
405 TIGR03499 FlhF flagellar biosy 96.3 0.0078 1.7E-07 68.3 7.2 83 1027-1116 194-282 (282)
406 TIGR02858 spore_III_AA stage I 96.3 0.005 1.1E-07 69.2 5.2 21 1028-1048 112-132 (270)
407 COG4618 ArpD ABC-type protease 96.2 0.0096 2.1E-07 70.5 7.6 36 1012-1048 348-383 (580)
408 PF00004 AAA: ATPase family as 96.2 0.0065 1.4E-07 59.6 5.4 21 1030-1050 1-21 (132)
409 PRK12723 flagellar biosynthesi 96.2 0.0092 2E-07 70.4 7.2 86 1027-1119 174-267 (388)
410 COG1135 AbcC ABC-type metal io 96.1 0.011 2.3E-07 66.4 6.5 107 1015-1122 21-175 (339)
411 cd00009 AAA The AAA+ (ATPases 96.1 0.0099 2.2E-07 58.5 5.8 26 1027-1052 19-44 (151)
412 PRK09183 transposase/IS protei 96.1 0.018 3.8E-07 64.6 8.3 26 1027-1052 102-127 (259)
413 KOG0056 Heavy metal exporter H 96.0 0.014 3.1E-07 68.3 7.3 111 1011-1123 549-709 (790)
414 TIGR03015 pepcterm_ATPase puta 96.0 0.01 2.2E-07 66.3 6.2 22 1027-1048 43-64 (269)
415 COG4175 ProV ABC-type proline/ 96.0 0.018 3.8E-07 64.7 7.6 33 1015-1048 43-75 (386)
416 COG1618 Predicted nucleotide k 96.0 0.011 2.4E-07 60.4 5.4 86 1030-1117 8-111 (179)
417 PRK11889 flhF flagellar biosyn 96.0 0.018 3.8E-07 67.4 7.8 87 1027-1119 241-333 (436)
418 PRK04296 thymidine kinase; Pro 96.0 0.012 2.5E-07 62.8 6.0 85 1027-1117 2-89 (190)
419 cd01130 VirB11-like_ATPase Typ 95.9 0.0079 1.7E-07 63.8 4.5 22 1027-1048 25-46 (186)
420 COG1245 Predicted ATPase, RNas 95.9 0.022 4.8E-07 66.6 8.2 94 1026-1127 366-494 (591)
421 PLN03232 ABC transporter C fam 95.9 0.018 3.9E-07 79.4 8.7 113 1013-1127 630-779 (1495)
422 COG4987 CydC ABC-type transpor 95.8 0.018 3.9E-07 68.8 7.3 43 1012-1063 350-392 (573)
423 PRK14974 cell division protein 95.8 0.031 6.8E-07 64.7 9.0 90 1027-1120 140-236 (336)
424 cd00820 PEPCK_HprK Phosphoenol 95.8 0.0067 1.5E-07 58.4 2.8 31 1017-1048 6-36 (107)
425 PF03266 NTPase_1: NTPase; In 95.7 0.0022 4.7E-08 67.1 -0.7 19 1030-1048 2-20 (168)
426 PRK08533 flagellar accessory p 95.7 0.02 4.4E-07 63.0 6.8 39 1026-1064 23-62 (230)
427 cd01120 RecA-like_NTPases RecA 95.6 0.025 5.5E-07 57.2 6.9 23 1029-1051 1-23 (165)
428 PF13401 AAA_22: AAA domain; P 95.6 0.0079 1.7E-07 59.3 2.9 85 1027-1116 4-97 (131)
429 PF13173 AAA_14: AAA domain 95.6 0.019 4.2E-07 56.9 5.6 23 1027-1049 2-24 (128)
430 COG4181 Predicted ABC-type tra 95.6 0.039 8.4E-07 57.0 7.6 114 1014-1128 24-186 (228)
431 PF13476 AAA_23: AAA domain; P 95.5 0.011 2.4E-07 62.5 3.8 24 1028-1051 20-43 (202)
432 PRK06731 flhF flagellar biosyn 95.5 0.035 7.7E-07 62.4 7.9 90 1026-1119 74-167 (270)
433 PRK05703 flhF flagellar biosyn 95.5 0.021 4.5E-07 68.4 6.4 87 1027-1120 221-313 (424)
434 PRK06067 flagellar accessory p 95.5 0.034 7.3E-07 61.2 7.6 41 1025-1065 23-64 (234)
435 PRK10416 signal recognition pa 95.4 0.045 9.7E-07 63.1 8.4 30 1027-1058 114-143 (318)
436 PLN03130 ABC transporter C fam 95.4 0.028 6.1E-07 77.8 7.9 113 1013-1127 630-779 (1622)
437 PRK10078 ribose 1,5-bisphospho 95.3 0.011 2.4E-07 62.6 3.1 21 1028-1048 3-23 (186)
438 COG1123 ATPase components of v 95.3 0.025 5.4E-07 68.5 6.3 36 1014-1050 305-340 (539)
439 TIGR00602 rad24 checkpoint pro 95.3 0.013 2.7E-07 73.2 3.6 23 1027-1049 110-132 (637)
440 PHA00729 NTP-binding motif con 95.3 0.017 3.7E-07 62.9 4.3 23 1029-1051 19-41 (226)
441 PRK06526 transposase; Provisio 95.3 0.048 1E-06 60.9 7.9 78 1028-1123 99-176 (254)
442 TIGR02322 phosphon_PhnN phosph 95.2 0.013 2.9E-07 61.4 3.1 23 1028-1050 2-24 (179)
443 TIGR00750 lao LAO/AO transport 95.2 0.065 1.4E-06 61.4 8.9 94 1026-1125 33-145 (300)
444 KOG0055 Multidrug/pheromone ex 95.2 0.034 7.4E-07 72.6 7.1 35 1013-1048 366-400 (1228)
445 PRK12726 flagellar biosynthesi 95.1 0.082 1.8E-06 61.8 9.4 86 1027-1118 206-297 (407)
446 PRK06921 hypothetical protein; 95.1 0.042 9.2E-07 61.8 7.0 69 1028-1117 118-188 (266)
447 PF05729 NACHT: NACHT domain 95.0 0.047 1E-06 55.7 6.4 25 1028-1052 1-25 (166)
448 PLN03232 ABC transporter C fam 95.0 0.037 8.1E-07 76.4 7.1 37 1013-1050 1249-1285(1495)
449 KOG1970 Checkpoint RAD17-RFC c 94.9 0.036 7.8E-07 66.2 5.9 24 1027-1050 110-133 (634)
450 TIGR01271 CFTR_protein cystic 94.9 0.047 1E-06 75.3 8.0 38 1013-1051 1232-1269(1490)
451 TIGR00235 udk uridine kinase. 94.9 0.018 3.9E-07 62.2 3.1 26 1025-1050 4-29 (207)
452 PRK09825 idnK D-gluconate kina 94.9 0.019 4.1E-07 60.5 3.1 24 1027-1050 3-26 (176)
453 COG3950 Predicted ATP-binding 94.9 0.021 4.6E-07 64.6 3.5 35 1014-1051 14-48 (440)
454 PRK00349 uvrA excinuclease ABC 94.9 0.063 1.4E-06 70.0 8.4 23 1026-1048 634-656 (943)
455 TIGR03263 guanyl_kin guanylate 94.8 0.02 4.4E-07 60.0 3.1 23 1027-1049 1-23 (180)
456 cd01131 PilT Pilus retraction 94.8 0.039 8.5E-07 59.2 5.3 20 1029-1048 3-22 (198)
457 COG4161 ArtP ABC-type arginine 94.7 0.027 6E-07 57.3 3.6 36 1015-1051 17-52 (242)
458 cd01128 rho_factor Transcripti 94.7 0.048 1E-06 60.7 5.9 24 1026-1049 15-38 (249)
459 PTZ00243 ABC transporter; Prov 94.7 0.046 1E-06 75.6 6.9 37 1013-1050 1323-1359(1560)
460 TIGR02788 VirB11 P-type DNA tr 94.7 0.033 7.1E-07 64.0 4.7 22 1027-1048 144-165 (308)
461 PF00448 SRP54: SRP54-type pro 94.7 0.087 1.9E-06 56.6 7.6 89 1028-1121 2-98 (196)
462 PTZ00265 multidrug resistance 94.7 0.072 1.6E-06 73.2 8.6 34 1014-1048 1182-1215(1466)
463 PLN03130 ABC transporter C fam 94.6 0.054 1.2E-06 75.1 7.3 36 1014-1050 1253-1288(1622)
464 PF03215 Rad17: Rad17 cell cyc 94.6 0.032 6.9E-07 68.3 4.6 30 1026-1060 44-73 (519)
465 cd03115 SRP The signal recogni 94.6 0.14 3E-06 53.5 8.7 87 1029-1120 2-96 (173)
466 KOG0066 eIF2-interacting prote 94.6 0.11 2.3E-06 60.4 8.1 51 1013-1074 602-659 (807)
467 KOG0058 Peptide exporter, ABC 94.6 0.053 1.1E-06 67.1 6.2 35 1013-1048 481-515 (716)
468 cd01121 Sms Sms (bacterial rad 94.5 0.059 1.3E-06 63.4 6.3 85 1026-1115 81-167 (372)
469 cd02025 PanK Pantothenate kina 94.5 0.026 5.5E-07 61.7 3.0 22 1029-1050 1-22 (220)
470 COG4136 ABC-type uncharacteriz 94.5 0.038 8.3E-07 55.7 3.9 26 1025-1050 26-51 (213)
471 PRK09270 nucleoside triphospha 94.4 0.035 7.5E-07 61.0 3.8 24 1026-1049 32-55 (229)
472 PRK00771 signal recognition pa 94.4 0.074 1.6E-06 63.8 6.8 88 1027-1120 95-189 (437)
473 PRK12377 putative replication 94.3 0.065 1.4E-06 59.6 5.7 74 1029-1119 103-176 (248)
474 PRK09435 membrane ATPase/prote 94.3 0.11 2.4E-06 60.1 7.7 91 1027-1123 56-165 (332)
475 TIGR02237 recomb_radB DNA repa 94.2 0.15 3.2E-06 54.9 8.2 40 1025-1064 10-50 (209)
476 PRK07952 DNA replication prote 94.1 0.1 2.2E-06 58.0 6.7 81 1028-1124 100-180 (244)
477 cd02023 UMPK Uridine monophosp 94.1 0.036 7.8E-07 59.2 3.1 23 1029-1051 1-23 (198)
478 PRK06893 DNA replication initi 94.0 0.071 1.5E-06 58.6 5.4 26 1028-1053 40-65 (229)
479 PF02463 SMC_N: RecF/RecN/SMC 94.0 0.046 1E-06 59.3 3.8 24 1027-1050 24-47 (220)
480 TIGR03238 dnd_assoc_3 dnd syst 94.0 0.032 7E-07 66.6 2.6 31 1014-1045 20-50 (504)
481 PLN00104 MYST -like histone ac 94.0 0.29 6.3E-06 58.1 10.3 45 106-150 56-109 (450)
482 TIGR00554 panK_bact pantothena 93.9 0.042 9.1E-07 62.4 3.4 23 1027-1049 62-84 (290)
483 cd01123 Rad51_DMC1_radA Rad51_ 93.9 0.12 2.6E-06 56.5 6.9 30 1025-1054 17-46 (235)
484 KOG2355 Predicted ABC-type tra 93.9 0.047 1E-06 57.8 3.4 50 993-1049 13-62 (291)
485 cd03241 ABC_RecN RecN ATPase i 93.8 0.046 1E-06 61.8 3.5 24 1028-1051 22-45 (276)
486 cd03242 ABC_RecF RecF is a rec 93.8 0.046 1E-06 61.6 3.4 24 1028-1051 22-45 (270)
487 COG1245 Predicted ATPase, RNas 93.8 0.19 4E-06 59.2 8.1 105 1013-1125 83-250 (591)
488 PF13304 AAA_21: AAA domain; P 93.7 0.018 3.9E-07 62.2 0.0 22 1029-1050 1-22 (303)
489 TIGR00957 MRP_assoc_pro multi 93.7 0.11 2.5E-06 71.8 7.6 36 1014-1050 1300-1335(1522)
490 COG4167 SapF ABC-type antimicr 93.7 0.053 1.1E-06 56.4 3.2 32 1015-1049 30-61 (267)
491 PRK00300 gmk guanylate kinase; 93.6 0.053 1.1E-06 58.2 3.4 25 1026-1050 4-28 (205)
492 PRK05416 glmZ(sRNA)-inactivati 93.6 0.14 3E-06 58.3 6.6 71 1027-1104 6-83 (288)
493 PRK08181 transposase; Validate 93.6 0.12 2.6E-06 58.2 6.2 79 1028-1124 107-185 (269)
494 cd01124 KaiC KaiC is a circadi 93.5 0.1 2.3E-06 54.7 5.4 34 1030-1063 2-36 (187)
495 PRK00411 cdc6 cell division co 93.4 0.18 3.8E-06 59.9 7.7 90 1027-1117 55-149 (394)
496 PRK05480 uridine/cytidine kina 93.4 0.06 1.3E-06 58.0 3.3 25 1026-1050 5-29 (209)
497 PF13207 AAA_17: AAA domain; P 93.4 0.063 1.4E-06 52.2 3.2 20 1029-1048 1-20 (121)
498 TIGR00064 ftsY signal recognit 93.3 0.28 6.1E-06 55.4 8.6 32 1027-1060 72-103 (272)
499 TIGR01360 aden_kin_iso1 adenyl 93.3 0.063 1.4E-06 56.4 3.2 22 1027-1048 3-24 (188)
500 TIGR02524 dot_icm_DotB Dot/Icm 93.3 0.059 1.3E-06 63.1 3.2 22 1027-1048 134-155 (358)
No 1
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=8.2e-174 Score=1532.74 Aligned_cols=964 Identities=42% Similarity=0.673 Sum_probs=794.3
Q ss_pred ccccCcccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhccCcceEEEEecchhhhhhccccccccccC
Q 001187 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSLLKRLRRDSFKKVVV 177 (1129)
Q Consensus 98 ~~~~~~~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1129)
.-..+++.+| .||.+.|..++.+..+ |-++....+..-+|+-+|......+....|.+ ...++.
T Consensus 8 ~~t~~~e~~~-----------~~~~~~v~~~~~~e~k----~l~~~t~k~~~~~e~~~~~~~~~r~~~~~rv~-~~e~~~ 71 (1125)
T KOG0217|consen 8 HMTFFEETPG-----------KLYRNSVGLKPKEEPK----SLRNGTLKIKNLKEKEEFKSGQPREVVSSRVK-EYEAVG 71 (1125)
T ss_pred ceeecccCcc-----------hhcccccccCCccchh----hhcCCCcCcCccchhhHhhccCcccccccccc-chhhcC
Confidence 3445677777 7999999998877665 65555544444456666663211111111110 122222
Q ss_pred CChhhhhccc-CccCCCCCCCcchhhc-cccCC-CCCCcchh-------hchhhhhh--------hccccccccccCC--
Q 001187 178 EDDEEMENVE-DEISDDRSDSSDDDWN-KNVGK-EDVSEDEE-------VDLVDEQE--------NKVLRGRKRKSSG-- 237 (1129)
Q Consensus 178 ~~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~-~~~~~~e~-------~~~~~e~e--------~~~~~~~~~k~~~-- 237 (1129)
.+.+.-.+.. ...-++.+++||+||+ |++.. +++++++| ++..+|+. ...+++|.+++..
T Consensus 72 ~d~~~~~~~~~~~~k~~~~sDsd~d~g~k~~~~~~~~d~~~~D~~~~d~~~~~~ee~~~~~~~~~~~~~~~r~~~a~~v~ 151 (1125)
T KOG0217|consen 72 DDADIVVESSSEKPKSGLDSDSDEDFGGKEVEEKEDSDEELDDETASDYEVVISEESEGGEPVCRVSDTDSRSRKAESVS 151 (1125)
T ss_pred CCccceeeecccCCccccCCCcccccCcccccccccccccccccccCCcceeccccccCCCcccccCCCcccchhccccc
Confidence 2222222222 2233456788888887 22222 22222111 01111111 1244566666644
Q ss_pred ---CcCCCCCCCCCCCCccccccCCccc-cCC-CCCCCCC-CCCccccccccccccccccccccCC-CCcccCCCCCCCC
Q 001187 238 ---VKKSKSDGNAVNADFKSPIIKPVKI-FGS-DKLSNGF-DNPVMGDVSERFSAREADKFHFLGP-DRRDAKRRRPGDV 310 (1129)
Q Consensus 238 ---~kk~~~~~~~~~~~~~~~~~~p~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~~rD~~~r~p~~p 310 (1129)
+||..+...++..+.......|.+- .+. ++.+.+. ....-++..+|+.++.++++.||.+ ++||+++|||+||
T Consensus 152 k~~~kk~~~~~~~~~~~~~~~~~~p~~~~~~~a~r~~~~~~~i~~~~~~~~~~~a~~~E~~r~l~~e~~RD~~rrr~~dp 231 (1125)
T KOG0217|consen 152 KGKSKKSPSDSGAVSMGHDLDFNDPMPLREGQASRSASGYCGISNGETELSRMEAFDHEKERYLKLEDVRDALRRRRGDP 231 (1125)
T ss_pred ccccCCCCCCccccccccccccCCCCccccCccccccccccccccccccccchhhhcccchhhccHHHhhhhhcCCCCCC
Confidence 2222223335555555566777662 122 2222232 2222344467788888888777765 5799999999999
Q ss_pred CCCCCCCCCCchhhcCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEehhhHHHHhhhcceeeecCCCCcCCcCcccHhHH
Q 001187 311 YYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMN 390 (1129)
Q Consensus 311 ~ydp~Tl~ip~~~~~~~TP~~~Qyw~iK~~~~D~vlffkvGkFYEly~~DA~i~a~~L~L~~t~g~~p~~GfPe~sl~~y 390 (1129)
+|||+|||||+++|++|||+++|||+||++|||+|||||+|||||||++||.+++++|+|+||++++|||||||++|+.|
T Consensus 232 ~yDp~TLyiP~s~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~f~~vN~~~~GfPE~sf~~~ 311 (1125)
T KOG0217|consen 232 EYDPRTLYIPPSFWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLKFMDVNMPHSGFPEGSFDYW 311 (1125)
T ss_pred CCCccceecCHHHHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhcceeecccccccCCCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCChhHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCCCC
Q 001187 391 VEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQST 470 (1129)
Q Consensus 391 ~~kLV~~GyKVavvEQ~Et~~~~~~r~k~~~~~~kvv~Rev~~V~TpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~ 470 (1129)
+.+|+++|||||+|||+||+.++++|++.+|+++|||+||||+|+|+||++|..++. ++.+.|||||+|+..+.. .+
T Consensus 312 a~q~iq~GYkvarVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td~~l~~-~~~akylmai~e~~~~~~--~~ 388 (1125)
T KOG0217|consen 312 ADQFIQKGYKVARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTDIALLT-SDLAKYLMAIKESEESYS--TG 388 (1125)
T ss_pred HHHHHhccceeeeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchhHHHhc-cHHHHHHHHHhhcCCCCC--cC
Confidence 999999999999999999999999999999999999999999999999999976664 456789999999876421 45
Q ss_pred CcEEEEEEEEccCCeEEEEEecCcchhHHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhh
Q 001187 471 DRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAET 550 (1129)
Q Consensus 471 ~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIl~~~~~ls~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~ 550 (1129)
...||+|++|++||+|+++||+||.+++.|.|+|+|++|+|+|.+.++++..|..+++....+..+..++|..+||+.++
T Consensus 389 ~~s~gvc~iDtstge~~~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~t~~~ik~~~~~~~~~n~~~~~eFwdsek 468 (1125)
T KOG0217|consen 389 EVSFGVCFIDTSTGEINIGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDPTKVIIKLKLSSNLVENLVPKSEFWDSEK 468 (1125)
T ss_pred ceeeeEEEEEcccceEEEEEeecchhhhHHHHHHHcccHHHHHHHhhccCCceeeeeeeeecchhhhcccChhhhcchhh
Confidence 67899999999999999999999999999999999999999999999999988887776666667777788889999999
Q ss_pred HHHHH--HHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhhccc
Q 001187 551 TVLEI--KNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFA 628 (1129)
Q Consensus 551 ~~~~l--~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~ 628 (1129)
+..++ .+||... +...+|.++.. ...+++++++|+|++++||+.+++++.+++++
T Consensus 469 ~~~eii~~dy~~~~--------------------g~e~~~sil~~---p~~~~~la~safg~~~~Ylk~~~id~~llsm~ 525 (1125)
T KOG0217|consen 469 TGREIISEDYFESL--------------------GLEDSPSILKS---PNTDKELALSAFGGLFYYLKKLLIDEELLSMK 525 (1125)
T ss_pred HHHHHhhhhhhhcc--------------------cccCchhhccC---CCccchhhHHHHHHHHHHHHHHhhHHHHhhhh
Confidence 88765 2455410 12234444332 23356899999999999999999999999999
Q ss_pred ceeecCCCCCccCCCCCeeecCHHHHHhccCcccccCCCCcccHHHHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 001187 629 KFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDA 708 (1129)
Q Consensus 629 ~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~Rlda 708 (1129)
+|+.|+... ...|+||++||+|||||.|+++|+.+||||.++|+|.||||||||++||++||+|.+.|++||||
T Consensus 526 n~~ey~~~~------~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~da 599 (1125)
T KOG0217|consen 526 NFEEYDSLD------QSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQDA 599 (1125)
T ss_pred hhhhcchhc------ccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHHHH
Confidence 999886432 23499999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001187 709 VAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAI 788 (1129)
Q Consensus 709 Ve~L~~~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~ 788 (1129)
|+.|.. ++..+.++...|+++||+||+|.|+|..+.. .++++.+|+.+|.+|+.+...+..+...
T Consensus 600 v~~l~~-~~~~~~~~~e~l~klPDlERlL~Rih~~~~~--------------~~k~i~~f~rvLegfk~~~~~~~~~~~v 664 (1125)
T KOG0217|consen 600 VDSLGK-APMDRTKVGETLKKLPDLERLLVRIHNGGEK--------------NKKKIADFIRVLEGFKEINKLLGSLINV 664 (1125)
T ss_pred HHHHhc-CchhHHHHHHHHhhCCcHHHHHHHHHhcCcc--------------chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 5666778999999999999999999975432 3578999999999999998888776655
Q ss_pred Hhhcch-hhHHhhhcCCCCchhHHHHHHHHHhhhchhhhcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001187 789 LENTES-RQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLL 867 (1129)
Q Consensus 789 l~~~~s-~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~ii~~~g~d~~lD~~~~~l~~l~~~L~~~l~~~~~~l 867 (1129)
+..... .++..++ ..+|++..-+..|..+|||..+.++|.|+|..|+|.+||.+...+.+++++|.++|+++++.+
T Consensus 665 ~~~~~~~~~is~~~---~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk~l 741 (1125)
T KOG0217|consen 665 LKEGEGLRLISELL---ESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRKRL 741 (1125)
T ss_pred HHhhHHHHHHHHHh---cCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 542222 2233332 348999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeCCceEEEEccccccCCCCCcEEEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001187 868 GDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEH 947 (1129)
Q Consensus 868 ~~~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~ 947 (1129)
+|.+|.|+++++..|++|||++....+|.+|++.+++||+.||+||++.++...+.++++++.....++.++++.+|.+|
T Consensus 742 ~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~~~f~~~ 821 (1125)
T KOG0217|consen 742 GCSSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLIVRFDEH 821 (1125)
T ss_pred CCCceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCCCCCCCcEEEeccCCCccccccCCCCcccccccccCCCCCC
Q 001187 948 HNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNA 1027 (1129)
Q Consensus 948 ~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~ 1027 (1129)
+..|+++++++|.||||+|||.+|..+++++|||+|++..+ +.+++.++.+||||+..... .+.|||||+.++..+..
T Consensus 822 ~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~d-t~~~l~~~~~~Hpcfsl~s~-~~~fipN~v~~g~~~e~ 899 (1125)
T KOG0217|consen 822 YIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTD-TPGFLIVKGLRHPCFSLPST-GTSFIPNDVELGGAEEN 899 (1125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccC-CCceeEEecccCceeecCcC-CCccccchhhccccccc
Confidence 99999999999999999999999999999999999997532 33489999999999976432 36899999999965667
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCC
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~ 1107 (1129)
++.++||||||||||+|||+|+++|||||||+|||+.++++++|+||||+||+|+|+.|.||||+|+.|++.||++||++
T Consensus 900 ~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~ 979 (1125)
T KOG0217|consen 900 REGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHATRH 979 (1125)
T ss_pred eeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcCcc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCCChHHHHhhhC
Q 001187 1108 SLVVLDELGRGTSTSDGQAIAS 1129 (1129)
Q Consensus 1108 sLvllDElGRGTst~DG~AIA~ 1129 (1129)
||||+|||||||+|+||.|||.
T Consensus 980 SLvi~DELGRGtst~DG~aIA~ 1001 (1125)
T KOG0217|consen 980 SLVIVDELGRGTSTFDGTAIAE 1001 (1125)
T ss_pred ceeeehhhcCcccccCCcchHH
Confidence 9999999999999999999994
No 2
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=1.8e-133 Score=1254.24 Aligned_cols=686 Identities=31% Similarity=0.471 Sum_probs=571.3
Q ss_pred CCHHHHHHHHHHHhCCCeEEEEeeCceEEEehhhHHHHhhhcceeeecC------CCCcCCcCcccHhHHHHHHHHcCCe
Q 001187 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG------EQPHCGFPERNFSMNVEKLARKGYR 400 (1129)
Q Consensus 327 ~TP~~~Qyw~iK~~~~D~vlffkvGkFYEly~~DA~i~a~~L~L~~t~g------~~p~~GfPe~sl~~y~~kLV~~GyK 400 (1129)
+||||||||+||++|||+|||||||||||||++||+++|++|||++|.+ ++||||||+|+++.|+++||++|||
T Consensus 1 ~TPm~~Qy~~iK~~~~D~iLffr~GdFYElf~eDA~~~a~~L~i~lt~r~~~~~~~~pm~GvP~ha~~~yl~kLv~~G~k 80 (840)
T TIGR01070 1 LTPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRGQSADEPIPMAGIPYHAVEAYLEKLVKQGES 80 (840)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCeEEeecCCCCCCCCCcccCCHHHHHHHHHHHHHCCCE
Confidence 6999999999999999999999999999999999999999999999975 2799999999999999999999999
Q ss_pred EEEEecCCChhHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEE
Q 001187 401 VLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVD 480 (1129)
Q Consensus 401 VavvEQ~Et~~~~~~r~k~~~~~~kvv~Rev~~V~TpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~~Gva~vD 480 (1129)
||||||+|||... +++|+||||+||||||+++++++.. .++|||+||.+.. ..||+||+|
T Consensus 81 Vai~eQ~e~~~~~----------kg~v~Rev~ri~TpGT~~~~~~l~~-~~~nyl~ai~~~~---------~~~gla~~D 140 (840)
T TIGR01070 81 VAICEQIEDPKTA----------KGPVEREVVQLITPGTVSDEALLPE-RQDNLLAAIAQES---------NGFGLATLD 140 (840)
T ss_pred EEEEEecCCchhc----------CCceeeEEEEEECCCcccccccccC-CCCceEEEEEeCC---------CeEEEEEEE
Confidence 9999999998641 2599999999999999999988864 3689999997421 259999999
Q ss_pred ccCCeEEEEEecCcchhHHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhHHHHHHHHHh
Q 001187 481 VATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYN 560 (1129)
Q Consensus 481 ~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIl~~~~~ls~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 560 (1129)
+|||+|++++|.|+ ..|.+.|.+++|+|||++.+..+ .....+ . +|+...+...+..+|+
T Consensus 141 ~sTG~~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~~~-~~~~~~---------~-------~f~~~~~~~~l~~~f~ 200 (840)
T TIGR01070 141 LTTGEFKVTELADK---ETLYAELQRLNPAEVLLAEDLSE-MEAIEL---------R-------EFRKDTAVMSLEAQFG 200 (840)
T ss_pred ccccEEEEEEecCH---HHHHHHHhccCCeEEEEcCCCCh-HHHHHh---------H-------hcchhHHHHHHHHhcC
Confidence 99999999999874 36999999999999999876422 221110 0 2233333444545443
Q ss_pred hcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhhcccceeecCCCCCcc
Q 001187 561 RITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGD 640 (1129)
Q Consensus 561 ~~~~~~~~k~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~~~~ 640 (1129)
... + . .+ .. .....+++|+|+++.||+.+.... +.++..+..+
T Consensus 201 ~~~---l------------~------------~~-~~-~~~~~~~~a~g~ll~Yl~~~~~~~-~~~~~~~~~~------- 243 (840)
T TIGR01070 201 TED---L------------G------------GL-GL-RNAPLGLTAAGCLLQYAKRTQRTA-LPHLQPVRLY------- 243 (840)
T ss_pred ccc---h------------h------------hc-CC-CCCHHHHHHHHHHHHHHHHhChhh-hhhCCCcEEE-------
Confidence 110 0 0 00 00 123578999999999999876542 3233333332
Q ss_pred CCCCCeeecCHHHHHhccCcccccCCCCcccHHHHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHcCCchhH
Q 001187 641 MAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA 720 (1129)
Q Consensus 641 ~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~ 720 (1129)
..+++|.||++|++|||||.|.+ |+.+||||++||+|+|+||+|+||+||++||+|++.|++|||+|++|.. +..++
T Consensus 244 -~~~~~m~lD~~t~~~LEl~~~~~-~~~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~-~~~l~ 320 (840)
T TIGR01070 244 -ELQDFMQLDAATRRNLELTENLR-GGKQNTLFSVLDETKTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLLR-HFFLR 320 (840)
T ss_pred -CCCCEEEeCHHHHHhccCCccCC-CCCCCcHHHHHhhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHh-CHHHH
Confidence 35679999999999999999986 4578999999999999999999999999999999999999999999986 55677
Q ss_pred HHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhh
Q 001187 721 LEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHI 800 (1129)
Q Consensus 721 ~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l 800 (1129)
..++..|+++||+||+++|+..+. . ..+++..+..+|..+..+.+ .+....+..+..+
T Consensus 321 ~~l~~~L~~i~Dlerll~ri~~~~-~--------------~~~dl~~l~~~l~~~~~l~~-------~l~~~~~~~l~~l 378 (840)
T TIGR01070 321 EGLRPLLKEVGDLERLAARVALGN-A--------------RPRDLARLRTSLEQLPELRA-------LLEELEGPTLQAL 378 (840)
T ss_pred HHHHHHhccCcCHHHHHHHHHcCC-C--------------CHHHHHHHHHHHHHHHHHHH-------HHHhcCcHHHHHH
Confidence 889999999999999999996431 1 12345555555554443332 2222333445444
Q ss_pred hcCCCCchhHHHHHHHHHhhhchhhh--cCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEeC
Q 001187 801 LTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIG 878 (1129)
Q Consensus 801 ~~~~~~~~~l~~~l~~i~~~~d~~~~--~~~g~ii~~~g~d~~lD~~~~~l~~l~~~L~~~l~~~~~~l~~~~i~~~~~~ 878 (1129)
.. .++.+.++.+.|+.+|+.... ..++.++ ++|+++++|+++..++++++.+.++.+++++.++.+++++....
T Consensus 379 ~~---~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I-~~g~~~~Ld~lr~~~~~~~~~l~~l~~~~~~~~~i~~lk~~~~~ 454 (840)
T TIGR01070 379 AA---QIDDFSELLELLEAALIENPPLVVRDGGLI-REGYDEELDELRAASREGTDYLARLEARERERTGIPTLKVGYNA 454 (840)
T ss_pred HH---hcccHHHHHHHHHHHHhcCCccccccCCee-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEec
Confidence 32 345667777778888763211 1234443 89999999999999999999998888878888888777776666
Q ss_pred CceEEEEccccccCCCCCcEEEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001187 879 KDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAAT 958 (1129)
Q Consensus 879 ~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~l 958 (1129)
..+|+|+|+.....++|++|++.+++++..||+||+++++++++.++++++..++.+++.+|...+.++...|..+++++
T Consensus 455 ~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~l 534 (840)
T TIGR01070 455 VFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPELKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARAL 534 (840)
T ss_pred CceEEEEEehhhhhcCCcceEEEEeccCceEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccceeecCCCCCCCCcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCC
Q 001187 959 AELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMG 1038 (1129)
Q Consensus 959 a~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~ 1038 (1129)
|+||||+|||.+|..+ +||||+|++ .+.|.|++||||+++.. + ...|||||+.|+. ..++++|||||||
T Consensus 535 a~lD~l~s~A~~a~~~--~~~~P~~~~-----~~~i~i~~~RHP~le~~-~-~~~~VpNdi~l~~--~~~~~iITGPNmg 603 (840)
T TIGR01070 535 AELDVLANLAEVAETL--HYTRPRFGD-----DPQLRIREGRHPVVEQV-L-RTPFVPNDLEMAH--NRRMLLITGPNMG 603 (840)
T ss_pred HHHHHHHHHHHHHHHC--CCcCceecC-----CCcEEEEeeECHHHHhc-c-CCCeEeeeeecCC--CccEEEEECCCCC
Confidence 9999999999999854 799999985 34799999999999853 2 3579999999985 3689999999999
Q ss_pred chhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 001187 1039 GKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1039 GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRG 1118 (1129)
||||||||+||++|||||||||||++|+++++|+||||||+.|++..|+||||+||.|++.||++||++|||||||+|||
T Consensus 604 GKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrG 683 (840)
T TIGR01070 604 GKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRG 683 (840)
T ss_pred CchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHhhhC
Q 001187 1119 TSTSDGQAIAS 1129 (1129)
Q Consensus 1119 Tst~DG~AIA~ 1129 (1129)
|+|.||.|||.
T Consensus 684 T~~~dg~aia~ 694 (840)
T TIGR01070 684 TSTYDGLALAW 694 (840)
T ss_pred CChhHHHHHHH
Confidence 99999999973
No 3
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=5.5e-132 Score=1248.27 Aligned_cols=696 Identities=33% Similarity=0.479 Sum_probs=584.3
Q ss_pred hcCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEehhhHHHHhhhcceeeecCC------CCcCCcCcccHhHHHHHHHHc
Q 001187 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE------QPHCGFPERNFSMNVEKLARK 397 (1129)
Q Consensus 324 ~~~~TP~~~Qyw~iK~~~~D~vlffkvGkFYEly~~DA~i~a~~L~L~~t~g~------~p~~GfPe~sl~~y~~kLV~~ 397 (1129)
.+++||||||||+||++|||+|||||||||||||++||+++|++|||++|+++ .||||||+|+++.|+++||++
T Consensus 5 ~~~~TP~~~Qy~~iK~~~~D~ilffr~GdFYElf~eDA~~~s~~L~i~lt~r~~~~~~~~pm~GvP~h~~~~yl~kLv~~ 84 (854)
T PRK05399 5 MSKLTPMMQQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDITLTKRGKSAGEPIPMAGVPYHAAEGYLAKLVKK 84 (854)
T ss_pred cCCCCHHHHHHHHHHhhCCCEEEEEEcCCEEEEeHhhHHHHHHHhCeEEeeccCCCCCCCCEecCcHHHHHHHHHHHHHC
Confidence 35799999999999999999999999999999999999999999999999753 599999999999999999999
Q ss_pred CCeEEEEecCCChhHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCCCCCcEEEEE
Q 001187 398 GYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGIC 477 (1129)
Q Consensus 398 GyKVavvEQ~Et~~~~~~r~k~~~~~~kvv~Rev~~V~TpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~~Gva 477 (1129)
|||||||||+|||..+ .++|+|+||+||||||+++++++.. ..++||+||.+. ...||+|
T Consensus 85 GyKVaI~EQ~e~~~~~----------k~~v~R~v~~i~TpGT~~~~~~l~~-~~~~yl~ai~~~---------~~~~Gia 144 (854)
T PRK05399 85 GYKVAICEQVEDPATA----------KGPVKREVVRIVTPGTVTDEALLDE-KQNNYLAAIAQD---------GGGYGLA 144 (854)
T ss_pred CCEEEEEEecCChhhc----------CCccceEEEEEECCCeeecccccCC-CCCcEEEEEEEC---------CCeEEEE
Confidence 9999999999998642 2599999999999999999988864 468999999864 2469999
Q ss_pred EEEccCCeEEEEEecCcchhHHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhHHHHHHH
Q 001187 478 VVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKN 557 (1129)
Q Consensus 478 ~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIl~~~~~ls~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~ 557 (1129)
|+|++||+|++++| .+++|++.|.+++|+|||++.+..+.. +... . .... ..+.. .|+...+.+.+.+
T Consensus 145 ~~D~stg~~~~~~~----~~~~L~~~l~~~~P~Eil~~~~~~~~~----~~~~-~-~~~~-~~~~~-~f~~~~~~~~l~~ 212 (854)
T PRK05399 145 YLDLSTGEFRVTEL----DEEELLAELARLNPAEILVPEDFSEDE----LLLL-R-RGLR-RRPPW-EFDLDTAEKRLLE 212 (854)
T ss_pred EEECCCCeEEEEEE----cHHHHHHHHHhcCCcEEEEcCCcchhh----Hhhc-c-ccce-ecccc-ccChHHHHHHHHH
Confidence 99999999999999 357899999999999999997754432 1111 1 1111 11222 2366667777777
Q ss_pred HHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhhcccceeecCCCC
Q 001187 558 IYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSG 637 (1129)
Q Consensus 558 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~ 637 (1129)
+|...+. . .+ .. ....+++|+|+++.||+.+.... +.++..+..+
T Consensus 213 ~f~~~~~---------------~-----~~--------~~--~~~~~~~a~~all~Yl~~~~~~~-~~~~~~~~~~---- 257 (854)
T PRK05399 213 QFGVASL---------------D-----GF--------GV--DLPLAIRAAGALLQYLKETQKRS-LPHLRSPKRY---- 257 (854)
T ss_pred HhCcCCc---------------c-----cc--------CC--CCHHHHHHHHHHHHHHHHhchhh-hhccCCCEEE----
Confidence 7742110 0 01 00 23578999999999999877532 3333333332
Q ss_pred CccCCCCCeeecCHHHHHhccCcccccCCCCcccHHHHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHcCCc
Q 001187 638 FGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQ 717 (1129)
Q Consensus 638 ~~~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~ 717 (1129)
...+||.||++|++|||||.|.. |+.+||||++||||+|+||+|+||+||++||+|+++|++|||+|++|.+ +.
T Consensus 258 ----~~~~~m~lD~~tl~~Lei~~~~~-~~~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~-~~ 331 (854)
T PRK05399 258 ----EESDYLILDAATRRNLELTENLR-GGRKNSLLSVLDRTVTAMGGRLLRRWLHRPLRDREAIEARLDAVEELLE-DP 331 (854)
T ss_pred ----CCCCEEEcCHHHHHhccCCccCC-CCCCCcHHHHhccCCCcHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHh-CH
Confidence 45679999999999999999874 5667899999999999999999999999999999999999999999995 66
Q ss_pred hhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhH
Q 001187 718 PFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQL 797 (1129)
Q Consensus 718 ~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l 797 (1129)
..+..++..|+++||+||+++|+..+. . ..+++..+..+|..+..+. ..+....+..+
T Consensus 332 ~~~~~l~~~L~~i~Dlerll~ri~~~~-~--------------~~~dl~~l~~~l~~~~~l~-------~~l~~~~~~~l 389 (854)
T PRK05399 332 LLREDLRELLKGVYDLERLLSRIALGR-A--------------NPRDLAALRDSLEALPELK-------ELLAELDSPLL 389 (854)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcC-C--------------CHHHHHHHHHHHHHHHHHH-------HHHHhcCcHHH
Confidence 778899999999999999999996432 1 1234555555554443332 23333334455
Q ss_pred HhhhcCCCCchhHHHHHHHHHhhhchhhh--cCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 001187 798 HHILTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYV 875 (1129)
Q Consensus 798 ~~l~~~~~~~~~l~~~l~~i~~~~d~~~~--~~~g~ii~~~g~d~~lD~~~~~l~~l~~~L~~~l~~~~~~l~~~~i~~~ 875 (1129)
..+.. .++.+.++++.|+.+||.... ..++.+ +++|++++||++++.++++++.+.+++++.++.++.+++++.
T Consensus 390 ~~l~~---~l~~~~~l~~~i~~~i~~~~~~~~~~~~~-i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 465 (854)
T PRK05399 390 AELAE---QLDPLEELADLLERAIVEEPPLLIRDGGV-IADGYDAELDELRALSDNGKDWLAELEARERERTGISSLKVG 465 (854)
T ss_pred HHHHh---hcccHHHHHHHHHHHHccCCchhcccCCE-ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 55543 245677778888888874321 123444 489999999999999999999999999888888888888877
Q ss_pred EeCCceEEEEccccccCCCCCcEEEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001187 876 TIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955 (1129)
Q Consensus 876 ~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~ 955 (1129)
..+..+|+|+||......+|++|+..+++++..||+||+++++++++.++++++..++.+++++++..+.++...|..++
T Consensus 466 ~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~~~l~~~~ 545 (854)
T PRK05399 466 YNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPELKELEDKILSAEEKALALEYELFEELREEVAEHIERLQKLA 545 (854)
T ss_pred EcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccceeecCCCCCCCCcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEec
Q 001187 956 AATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGP 1035 (1129)
Q Consensus 956 ~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGp 1035 (1129)
+++|+||||+|||.+|..+ +||||+|++ .+.|.|++||||+++.. +....|||||+.|+. ..++++||||
T Consensus 546 ~~la~lD~l~s~A~~a~~~--~~~~P~~~~-----~~~l~i~~~rHP~le~~-~~~~~~vpnd~~l~~--~~~~~iiTGp 615 (854)
T PRK05399 546 KALAELDVLASLAEVAEEN--NYVRPEFTD-----DPGIDIEEGRHPVVEQV-LGGEPFVPNDCDLDE--ERRLLLITGP 615 (854)
T ss_pred HHHHHHHHHHHHHHHHHHC--CccccEEeC-----CCCEEEEeccCcEEecc-cCCCceEecceeeCC--CCcEEEEECC
Confidence 9999999999999999854 799999985 34699999999999862 234689999999984 4689999999
Q ss_pred CCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCC
Q 001187 1036 NMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDEL 1115 (1129)
Q Consensus 1036 N~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDEl 1115 (1129)
|||||||||||+|+++||||+||||||++|+++++|+||||||+.|++..|+||||+||.+++.||++||++|||||||+
T Consensus 616 N~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~ 695 (854)
T PRK05399 616 NMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEI 695 (854)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHhhh
Q 001187 1116 GRGTSTSDGQAIA 1128 (1129)
Q Consensus 1116 GRGTst~DG~AIA 1128 (1129)
||||+|.||.|||
T Consensus 696 GrGTs~~dg~aia 708 (854)
T PRK05399 696 GRGTSTYDGLSIA 708 (854)
T ss_pred CCCCCcchhHHHH
Confidence 9999999999997
No 4
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.4e-133 Score=1235.23 Aligned_cols=705 Identities=35% Similarity=0.495 Sum_probs=579.0
Q ss_pred hcCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEehhhHHHHhhhcceeeecCC-CCcCCcCcccHhHHHHHHHHcCCeEE
Q 001187 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE-QPHCGFPERNFSMNVEKLARKGYRVL 402 (1129)
Q Consensus 324 ~~~~TP~~~Qyw~iK~~~~D~vlffkvGkFYEly~~DA~i~a~~L~L~~t~g~-~p~~GfPe~sl~~y~~kLV~~GyKVa 402 (1129)
++++||||||||+||++|+|++||||||+|||+|++||.++|++|+|++|+++ +||||||+|+++.|+++||++|||||
T Consensus 3 ~~~~tP~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~itlT~r~~~pm~gvP~h~~~~yl~~li~~g~kVA 82 (843)
T COG0249 3 KAKLTPMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTKRGNIPMAGVPYHALDYYLAKLIELGYKVA 82 (843)
T ss_pred cccCCcHHHHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCceeecCCCCcCCCCccccHHHHHHHHHhCCCeEE
Confidence 56899999999999999999999999999999999999999999999999975 59999999999999999999999999
Q ss_pred EEecCCChhHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEcc
Q 001187 403 VVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVA 482 (1129)
Q Consensus 403 vvEQ~Et~~~~~~r~k~~~~~~kvv~Rev~~V~TpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~~Gva~vD~s 482 (1129)
||||+|+|..+ .++|+|+|+||+||||++|+.++... ++|||+||..... . .||+||+|++
T Consensus 83 iceQ~e~~~~~----------k~~v~R~v~rv~TpGt~~d~~~l~~~-~~n~l~a~~~~~~-------~-~~gla~~dls 143 (843)
T COG0249 83 ICEQLEDPAEA----------KGVVERKVVRVVTPGTLTDEALLSDR-ENNYLAALAIDRD-------G-KVGLAFIDLS 143 (843)
T ss_pred EEEcccChhhh----------cCcceeEEEEEECCCeeecccccccc-ccceEEEEEecCC-------C-EEEEEEEEcc
Confidence 99999999753 24999999999999999999988643 7899999985431 1 7999999999
Q ss_pred CCeEEEEEecCcchhHHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhHHHHHHHHHhhc
Q 001187 483 TSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562 (1129)
Q Consensus 483 tg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIl~~~~~ls~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~ 562 (1129)
||+|++.+|. +.+|.+.|.+++|+|||++....+......... +.....+ ..+++...+...|..+|...
T Consensus 144 tGef~~~~~~----~~~l~~~l~r~~p~Eil~~~~~~~~~~~~~~~~-----~~~~~~~-~~~f~~~~~~~~l~~~~~~~ 213 (843)
T COG0249 144 TGEFFVSEFE----REKLLSELKRLQPKELLLSESLLSSTLAEIQKG-----LFVVRLP-ASFFDEDDAEEILSEYFGVR 213 (843)
T ss_pred cCeEEEEEee----HHHHHHHHHhCCCcEEEeccccCchhhhhhhhc-----eeeeecc-hhhcCccHHHHHHHHHhCcc
Confidence 9999999998 678999999999999999987665432221111 1111222 24456666666677776532
Q ss_pred ccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhhcccceeecCCCCCccCC
Q 001187 563 TAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMA 642 (1129)
Q Consensus 563 ~~~~~~k~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~~~~~~ 642 (1129)
+- ..++. ....++++|+|+++.|++.++... +.+. ..+....
T Consensus 214 ~l---------------~~~~~--------------~~~~~~~~a~~~ll~Y~~~t~~~~-l~~~--------~~~~~~~ 255 (843)
T COG0249 214 DL---------------DGFGL--------------ISTPLALSAAGALLSYLKDTQKTF-LPHI--------QIIQRYD 255 (843)
T ss_pred cc---------------ccccc--------------ccchHHHHHHHHHHHHHHHhhhcc-cccc--------ccceeec
Confidence 21 00110 012679999999999997765442 2111 1222345
Q ss_pred CCCeeecCHHHHHhccCcccccCCCCcccHHHHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHcCCchhHHH
Q 001187 643 KKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE 722 (1129)
Q Consensus 643 ~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~ 722 (1129)
...||.||.+|++|||||+|.++++.+||||++||+|+|+||+|||++||++||+|.++|+.|||+|++|.. +..++..
T Consensus 256 ~~~~m~lD~~t~~nLEl~~~~~~~~~~gSL~~~ld~t~T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~-~~~l~~~ 334 (843)
T COG0249 256 LEDYMVLDAATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKD-NPELREK 334 (843)
T ss_pred cCcEEEEcHHHHhcccccccCCCCCCCCcHHHHhccCCCchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHh-hhHHHHH
Confidence 667999999999999999999877889999999999999999999999999999999999999999999986 4567889
Q ss_pred HHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcc-hhhHHhhh
Q 001187 723 FRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTE-SRQLHHIL 801 (1129)
Q Consensus 723 lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~-s~~l~~l~ 801 (1129)
||..|+++||+||+++|+..+. .+ .+++..+.+.|..+..+..... ... ...+..+.
T Consensus 335 L~~~L~~v~DleRl~~Rl~~~~-~~--------------~rDl~~l~~~l~~~~~i~~~l~-------~~~~~~~l~~~~ 392 (843)
T COG0249 335 LREMLKKVPDLERLLSRLSLGR-AS--------------PRDLLRLRDSLEKIPEIFKLLS-------SLKSESDLLLLL 392 (843)
T ss_pred HHHHHhcCcCHHHHHHHHHcCC-CC--------------hhhHHHHHHHHHHHHHHHHHHh-------ccccchhhhHHh
Confidence 9999999999999999997543 11 2344455555544444333221 111 11122221
Q ss_pred cCCCCchhHHHHHHHHHhhhchhhhcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEeCCce
Q 001187 802 TPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDL 881 (1129)
Q Consensus 802 ~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~ii~~~g~d~~lD~~~~~l~~l~~~L~~~l~~~~~~l~~~~i~~~~~~~~~ 881 (1129)
.....++.+.++...+..++...........+++.|++++||+.+...++.++.+.++..+.+..++..+++.......+
T Consensus 393 ~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~~r~~~gi~slki~~n~v~G 472 (843)
T COG0249 393 EDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAKLELEERERTGIKSLKIKYNKVYG 472 (843)
T ss_pred hhhhccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhccce
Confidence 11113343456666666666532221111134589999999999999999988888888777888887765444334478
Q ss_pred EEEEccccccCCCCCcEEEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001187 882 YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAEL 961 (1129)
Q Consensus 882 y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~L 961 (1129)
|+|+|+......+|.+|+.+++.++..||+||+++++..++..+++++...+.+++.++++.+..|.+.|+.++.++|+|
T Consensus 473 y~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~l 552 (843)
T COG0249 473 YYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAEL 552 (843)
T ss_pred eEEEechhccccCchHHHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceeecCCCCCCCCcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchh
Q 001187 962 DALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKS 1041 (1129)
Q Consensus 962 D~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKS 1041 (1129)
|||+|||..|. ..+||||+|++. ..|.|++||||++|.. +..+ |||||+.|+. ..++++||||||||||
T Consensus 553 D~l~slA~~a~--~~~y~rP~~~~~-----~~l~i~~gRHPvvE~~-~~~~-fVpNd~~L~~--~~~i~lITGPNM~GKS 621 (843)
T COG0249 553 DVLSSLAEIAA--EQNYVRPEFVDS-----NDLEIKEGRHPVVEAV-LDNG-FVPNDIDLSG--NRRIILITGPNMGGKS 621 (843)
T ss_pred HHHHHHHHHHh--hCCCCCceecCC-----CCEEEEecCcchhhhh-ccCC-cccCceeeCC--CceEEEEECCCCCccH
Confidence 99999999996 458999999863 2399999999999973 3333 9999999986 5789999999999999
Q ss_pred HHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 001187 1042 TLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1042 t~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst 1121 (1129)
|||||+||++|||||||||||++|.++++|+||||||+.|++..|+||||+||.|+++||++||++|||||||+||||||
T Consensus 622 TylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT 701 (843)
T COG0249 622 TYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTST 701 (843)
T ss_pred HHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhC
Q 001187 1122 SDGQAIAS 1129 (1129)
Q Consensus 1122 ~DG~AIA~ 1129 (1129)
+||+|||+
T Consensus 702 ~DGlaIA~ 709 (843)
T COG0249 702 YDGLAIAW 709 (843)
T ss_pred chhHHHHH
Confidence 99999984
No 5
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-127 Score=1092.32 Aligned_cols=745 Identities=30% Similarity=0.439 Sum_probs=585.9
Q ss_pred cCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEehhhHHHHhhhccee-eecCCCCcCCcCcccHhHHHHHHHHcCCeEEE
Q 001187 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNVEKLARKGYRVLV 403 (1129)
Q Consensus 325 ~~~TP~~~Qyw~iK~~~~D~vlffkvGkFYEly~~DA~i~a~~L~L~-~t~g~~p~~GfPe~sl~~y~~kLV~~GyKVav 403 (1129)
.++||+++||.|+|++|+|+||..+|||.|.+|++||+|++++|||. ++.+++..|.||.++++.|++|||++||||||
T Consensus 160 s~yTPLeqQ~~elK~~h~d~VL~ievGYkyRfFgeDAeiasrvLgIych~dhnFmtaS~P~~Rl~vHleRLv~~g~KVaV 239 (1070)
T KOG0218|consen 160 SKYTPLEQQVKELKMHHRDKVLVIEVGYKYRFFGEDAEIASRVLGIYCHNDHNFMTASFPDVRLNVHLERLVHHGLKVAV 239 (1070)
T ss_pred cccCcHHHHHHHHHhhCCceEEEEEecceEEeecccHHHHHHhhceEEEeccceeeccCCcchhhHHHHHHHhcCceEEE
Confidence 47899999999999999999999999999999999999999999996 57889999999999999999999999999999
Q ss_pred EecCCChhHHHHHhhhcCCCCceeeeeEEEEeeCcceeecc--ccC----CCCCCcEEEEEEecCCCCCCCCCCcEEEEE
Q 001187 404 VEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE--LLS----ANPDASYLMALTESNQSPASQSTDRCFGIC 477 (1129)
Q Consensus 404 vEQ~Et~~~~~~r~k~~~~~~kvv~Rev~~V~TpGTl~d~~--~l~----~~~~~~yllaI~e~~~~~~~~~~~~~~Gva 477 (1129)
|+|+||++.+ +...++..+|.|+|++|||+||+.++. .+. -+..++|++||.+........++...||+.
T Consensus 240 VkQtETAAiK----s~gasRsslF~RklsavyTKaTl~eds~~~~r~e~~~~~~ssfllcv~dn~~ksk~ksg~v~vgli 315 (1070)
T KOG0218|consen 240 VKQTETAAIK----SHGASRSSLFERKLSAVYTKATLGEDSTFVLRGERILGDTSSFLLCVRDNVHKSKEKSGVVKVGLI 315 (1070)
T ss_pred EeehhhHHHH----hcCCcccchHHHHHHHHhhhhhhccccccccchhhhcCCcceEEEEEehhhhhhhhhcCceEEEEE
Confidence 9999998864 233467899999999999999998664 221 122578999998755443344567889999
Q ss_pred EEEccCCeEEEEEecCcchhHHHHHHHHccCccEEEecCCCCChHHHHHHHhh-cCCCccccccCCccccChhhHH----
Q 001187 478 VVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRH-TRNPLVNDLVPLSEFWDAETTV---- 552 (1129)
Q Consensus 478 ~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIl~~~~~ls~~t~~~l~~~-~~~~~~~~~~~~~~f~~~~~~~---- 552 (1129)
.|.++||++.+++|.|+..++.|+|.|..++|.|+|++. .+|+.+...+.+. .+.... ....| +-+.++
T Consensus 316 gVqlstGevVydeFqdnf~rseLqtrisslqP~ElLl~~-~ls~qt~all~~~~Vsve~~----~~rv~-r~~naV~q~i 389 (1070)
T KOG0218|consen 316 GVQLSTGEVVYDEFQDNFARSELQTRISSLQPIELLLNT-DLSPQTVALLFKDNVSVELI----HKRVY-RLENAVVQAI 389 (1070)
T ss_pred EEecCCCcEehHhhhhhHHHHHHHHHHhccCcceeecCC-CCcHHHHHHHHhcccchhhh----hhhhh-hchhHHHHHH
Confidence 999999999999999999999999999999999999985 4677887776542 211111 11111 111111
Q ss_pred ----HHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhhccc
Q 001187 553 ----LEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFA 628 (1129)
Q Consensus 553 ----~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~ 628 (1129)
+.+.+||....- ..+....|+ +++.. ..-.+|.|+.++.||.+..+++ ++..+
T Consensus 390 kla~e~~q~f~~~k~~--------------l~gs~ii~l------i~nl~--~psvic~la~~is~lkefnlE~-~l~~p 446 (1070)
T KOG0218|consen 390 KLANEKIQNFEDDKEM--------------LEGSEIICL------IMNLS--HPSVICLLAKLISHLKEFNLEQ-VLLIP 446 (1070)
T ss_pred HHHHHHHhhhhhhhhh--------------hhhhhhhhh------hhcCC--CchHHHHHHHHHHHHHHhchHH-heecc
Confidence 112223221110 011111121 22221 1234555999999999987765 44444
Q ss_pred ceeecCCCCCccCCCCCeeecCHHHHHhccCcccccCCCCcccHHHHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 001187 629 KFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDA 708 (1129)
Q Consensus 629 ~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~Rlda 708 (1129)
+|.. .+....+|.|+++||++||||.|+.+|+.+|||||+||||.|.||.|+||.|+.+||+|...|++||||
T Consensus 447 sf~s-------~~ss~e~Mtls~ntLq~Leif~nqtd~~~kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDA 519 (1070)
T KOG0218|consen 447 SFYS-------PFSSKEHMTLSPNTLQSLEIFTNQTDGSEKGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDA 519 (1070)
T ss_pred cccC-------cccccceeeechhhhhceeeeeecCCCCcccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 5532 234567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-cC-CchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHH--
Q 001187 709 VAGLR-GV-NQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSS-- 784 (1129)
Q Consensus 709 Ve~L~-~~-~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~-- 784 (1129)
|+++. .. |...+..+++.|.++|||+|-|+||+.+....+ ..+++ .++.+..+...++.+......
T Consensus 520 VeeitshssnS~vf~si~~~l~rlpDl~rgL~rIy~~tCtp~---~eff~-------vlk~iy~a~s~fq~~~~~~~~~~ 589 (1070)
T KOG0218|consen 520 VEEITSHSSNSIVFESINQMLNRLPDLLRGLNRIYYGTCTPR---KEFFF-------VLKQIYSAVSHFQMHQSYLEHFK 589 (1070)
T ss_pred HHHHHhcccchHHHHHHHHHHHhCcHhHhhHHHHhcccCCcH---HHHHH-------HHHHHHHHHHHHHHHhhhhhhhc
Confidence 99993 22 333677899999999999999999987643211 11111 122333322222211100000
Q ss_pred HHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchhhhcCCCC--eeeCCCCChhHHHHHHHHH---HH---HHHH
Q 001187 785 LGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGR--IIPHGGVDMDYDSACKKVK---EI---EASL 856 (1129)
Q Consensus 785 l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~--ii~~~g~d~~lD~~~~~l~---~l---~~~L 856 (1129)
....-...+|.+|+.++.... -|.+...+.+|..+++..++.+... +...-.-.|.|+...+.+. ++ ...|
T Consensus 590 ~s~~~s~~qS~LLrrlisel~-~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e~~di~~virE~~ms~~~~ 668 (1070)
T KOG0218|consen 590 SSDGRSGKQSPLLRRLISELN-EPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDESEDIIKVIRESEMSRSQL 668 (1070)
T ss_pred cccccchhccHHHHHHHHHhc-CccccccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhhhhhHHHHHHHHHHHHHHH
Confidence 000111245677777654211 2556666777777777554432221 1101112355555444332 22 2356
Q ss_pred HHHHHHHHHHhCCCCceEEEeCCceEEEEccccccCCCCCcEEEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHH
Q 001187 857 TKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSI 936 (1129)
Q Consensus 857 ~~~l~~~~~~l~~~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~i 936 (1129)
.++|++.|+.+..+++.|..+++..|+|||+.+..+++|.+|+.++++|...||+||+++++..+|..+++.........
T Consensus 669 ~~hLaeiRk~Lk~pnlef~~vsgv~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~ 748 (1070)
T KOG0218|consen 669 KEHLAEIRKYLKRPNLEFRQVSGVDFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQ 748 (1070)
T ss_pred HHHHHHHHHHhcCCCceeEEecCeeEEEEecccccccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 77999999999999999999999999999999988999999999999999999999999999999999999988888889
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCCCCCCCcEEEeccCCCccccccCCCCcccc
Q 001187 937 LQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVP 1016 (1129)
Q Consensus 937 l~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fvp 1016 (1129)
+..++.+|.+|+..|+.++..+|.||||+|||.+|. ..+||||+|++.+ ..|.|++||||++|. +....|||
T Consensus 749 ~~sFL~kiSehYtelrkat~~LatlDCi~SlA~~s~--n~nYvRPtfvd~~----~eI~ikngRhPvIe~--Ll~d~fVP 820 (1070)
T KOG0218|consen 749 YKSFLNKISEHYTELRKATLNLATLDCILSLAATSC--NVNYVRPTFVDGQ----QEIIIKNGRHPVIES--LLVDYFVP 820 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCccCcccccch----hhhhhhcCCCchHHH--HhhhccCC
Confidence 999999999999999999999999999999999998 5589999999742 468999999999996 33456999
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHH
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSE 1096 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e 1096 (1129)
||+.|.. ++.++.+||||||||||.|+||+||+.||||+||||||++|++++||.||||||++|||..|.||||+||.+
T Consensus 821 Ndi~ls~-egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emld 899 (1070)
T KOG0218|consen 821 NDIMLSP-EGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLD 899 (1070)
T ss_pred CcceecC-CCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHH
Confidence 9999987 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHhhhC
Q 001187 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAIAS 1129 (1129)
Q Consensus 1097 ~~~il~~at~~sLvllDElGRGTst~DG~AIA~ 1129 (1129)
++.||+.||.+||||||||||||||+||+|||+
T Consensus 900 t~eil~kat~~SlvilDElGRGTsThDGiAIsY 932 (1070)
T KOG0218|consen 900 TLEILKKATKRSLVILDELGRGTSTHDGIAISY 932 (1070)
T ss_pred HHHHHHhcccchhhhhHhhcCCCccccchhHHH
Confidence 999999999999999999999999999999984
No 6
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1e-82 Score=743.03 Aligned_cols=712 Identities=28% Similarity=0.381 Sum_probs=528.4
Q ss_pred cCCCHHHHHHHHHHHhCC---CeEEEEeeCceEEEehhhHHHHhhhc-----ceeeecC----CCCcCCcCcccHhHHHH
Q 001187 325 RNLSEGQKQWWEFKSKHM---DKVIFFKMGKFYELFEMDAHVGAKEL-----DLQYMKG----EQPHCGFPERNFSMNVE 392 (1129)
Q Consensus 325 ~~~TP~~~Qyw~iK~~~~---D~vlffkvGkFYEly~~DA~i~a~~L-----~L~~t~g----~~p~~GfPe~sl~~y~~ 392 (1129)
.+-+.+++-|..+=..-| ++|-||..|+||..|++||..+|+.- -++++.. +.-.|.+--..|...++
T Consensus 10 ~~d~~~~~~f~~f~~~l~~p~~tvr~fdrge~ytv~geDa~~va~~v~kt~~~~k~l~~~~~~~~~~v~ls~~~~e~~vr 89 (902)
T KOG0219|consen 10 GKDEAADRNFLKFYEGLPKPTTTVRFFDRGEYYTVHGEDAEFVARNVYKTQAVIKTLSPDNAKNTKEVSLSKGNFEKVVR 89 (902)
T ss_pred cccchhHHHHHHHHhcCCCCCceEEEecCcceEEEeccchhhhhhhhhhhhhhheecCCcccccceEEEecHHHHHHHHH
Confidence 345667777777766554 79999999999999999999999854 2343322 22334555667788886
Q ss_pred HH-HHcCCeEEEEecCCChhHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccc-cCCCCC-Cc--EEEEEEecCCCCCC
Q 001187 393 KL-ARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL-LSANPD-AS--YLMALTESNQSPAS 467 (1129)
Q Consensus 393 kL-V~~GyKVavvEQ~Et~~~~~~r~k~~~~~~kvv~Rev~~V~TpGTl~d~~~-l~~~~~-~~--yllaI~e~~~~~~~ 467 (1129)
-| +..+|+|.+++--|+ +++++.==+||.+.+.+. +..+.+ +. -++.+... +
T Consensus 90 ~~l~~~~~~Ve~y~~~~~------------------~w~l~~~~sPGN~~~fedll~~~~~v~is~~~~~v~~~-----~ 146 (902)
T KOG0219|consen 90 ELLLVLRYRVEVYSSNQG------------------DWKLTKRGSPGNLVQFEDLLFSNNDVPISIISLIVKHP-----G 146 (902)
T ss_pred HHHHHhccceEEeecCcc------------------ceeEEecCCCCcHHHHHHHHcccccchhhhhheeEEee-----c
Confidence 55 589999999975422 123333348999877653 222111 11 11122211 1
Q ss_pred CCCCcEEEEEEEEccCCeEEEEEecCcchhHHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccC
Q 001187 468 QSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWD 547 (1129)
Q Consensus 468 ~~~~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIl~~~~~ls~~t~~~l~~~~~~~~~~~~~~~~~f~~ 547 (1129)
..+.+.+|+|++|++.-.+++.+|.||..+++|+..|.++.|+|+|++.+....+..++..-..+..+....+...+|-+
T Consensus 147 ~~~~~~vgv~~~d~~~~k~~~~ef~Dn~~~snle~~l~~lg~kEcll~~~~~~~~~~kl~~~~~r~g~~~t~~~~~e~~~ 226 (902)
T KOG0219|consen 147 VDGQRRVGVAFVDTINVKIGLSEFVDDDSFSNLEALLIQLGPKECVLPEGSVAGEMKKLRNIIDRCGVLITLRKKSESSW 226 (902)
T ss_pred cCCCceeEEEEechhheeeehhhhcCcHHHHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhccCeEEEEecccchhH
Confidence 23567899999999999999999999999999999999999999999943333333333222234444444444444421
Q ss_pred hhhHHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhhcc
Q 001187 548 AETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRF 627 (1129)
Q Consensus 548 ~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~al~Algall~YL~~~~l~~~ll~~ 627 (1129)
..-+..+...+.... ....+|+ + ...++++++.+++.||. +.++. -..
T Consensus 227 -kdv~~~l~~~l~~~~-------------------~~~~~~e----~-----~~q~a~~~~~~~i~yl~--~~~e~-~~s 274 (902)
T KOG0219|consen 227 -KDVEQDLNRLLKSQE-------------------HAAYLPE----L-----ELQLAMSALSALIKYLD--LENEY-SNS 274 (902)
T ss_pred -HHHHHHHHhcccchh-------------------hhccchH----H-----HhHHHHHHHHHHHHHHh--hcccc-ccc
Confidence 122222222221000 0112332 2 24689999999999994 22221 122
Q ss_pred cceeecCCCCCccCCCCCeeecCHHHHHhccCcccccC-CCCcccHHH-HHhhhcChHHHHHHHHhhhCCCCCHHHHHHH
Q 001187 628 AKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRS-GDSSGTLYA-QLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705 (1129)
Q Consensus 628 ~~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~-g~~~gSL~~-lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~R 705 (1129)
+++++. ......+|.||.+|+++|++|+...+ -....+|.. +||||.|++|.|||++|+.+||+++..|++|
T Consensus 275 ~~~ei~------~~~~~~~m~ld~~av~alnlf~~~~~~~~~s~~L~~~~LN~c~t~~G~rll~~w~~qpL~~~~ri~~r 348 (902)
T KOG0219|consen 275 GKYELT------NHGLHQFMRLDSAAVRALNLFPLPYNNPEKSNNLALSLLNHCKTLQGERLLRQWLKQPLRDIDRINER 348 (902)
T ss_pred ceEEEe------ecchHHHhhHHHHHHHHHhhcCCCCCCccccchhhHHHHhhcccccchhhhhhhhhcchHHHHHHHHH
Confidence 344443 23455799999999999999986532 233457887 9999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchhHHHHH-HhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001187 706 QDAVAGLRGVNQPFALEFR-KALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSS 784 (1129)
Q Consensus 706 ldaVe~L~~~~~~~~~~lr-~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~ 784 (1129)
+|.|+.|+. +...++.++ +.|..+||+-|+..|+- .+ + ..++..++.....+..+.+.+.+
T Consensus 349 ~d~v~~l~~-~~~~rq~L~~~lL~~~pdi~rl~~~l~-~~----~------------L~d~~r~yq~~~~l~~~~~~l~~ 410 (902)
T KOG0219|consen 349 HDLVEALVE-DAEIRQKLRDDLLRRIPDISRLARRLM-KA----N------------LQDVNRIYQAAKLLPTVVQVLIS 410 (902)
T ss_pred hhhHHHHHh-hhHHHHHHHHHHhhcChhHHHhhhhhh-hc----c------------hHHHHHHHHHHHHhHHHHHHHHh
Confidence 999999986 455565554 57899999999999984 11 1 11222222222222222222221
Q ss_pred HHHHHhhcchhhHH-hhhcCCCCchhHHHHHHHHHhhhchhhhcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 001187 785 LGAILENTESRQLH-HILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQ 863 (1129)
Q Consensus 785 l~~~l~~~~s~~l~-~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~ii~~~g~d~~lD~~~~~l~~l~~~L~~~l~~~ 863 (1129)
+ ....+ .++. .+. .....+.++...++..+|++.+.+ +.+++++.+|+++-++++.+++++..+.+..+..
T Consensus 411 ~---~~~~~-~ll~~~l~---~~~~~~~kf~~~ve~t~D~da~ee-~ey~VR~eFdeeL~eLrq~LdeL~~~m~~~hkrv 482 (902)
T KOG0219|consen 411 L---SESHN-RLLKSPLT---EHLKKLEKFQEMVETTVDLDAEEE-NEYRVRVDFDEELQELREKLDELERKMEKLHKKV 482 (902)
T ss_pred h---hhhhh-hhhhhhhh---hhhhhHHHHHHHHHHHhhHhHHhc-CcEEEecccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111 1111 111 112345566677788888877765 8888899999999999999999999999888877
Q ss_pred HHHhCCC---CceEEEeCCceEEEEccccccCCC--CCcEEEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001187 864 RKLLGDT---SITYVTIGKDLYLLEVPESLRGSV--PRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQ 938 (1129)
Q Consensus 864 ~~~l~~~---~i~~~~~~~~~y~iev~~~~~~~v--p~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~ 938 (1129)
...++.. +++.-.....||++.+.....+.+ .++|+..++.||.++|+|.+|..+++++.+.+.++...+..+.+
T Consensus 483 ~~dl~~D~~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivr 562 (902)
T KOG0219|consen 483 SADLGLDPKKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKGGVKFTTKKLSSLNDEFMSLQKEYDEAQNEIVR 562 (902)
T ss_pred HhhcCCCcccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeCcEEEEhhhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7666543 355555667889988865433322 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCCCCCCCcEEEeccCCCccccccCCCCcccccc
Q 001187 939 RLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPND 1018 (1129)
Q Consensus 939 ~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fvpNd 1018 (1129)
+++.....|.+.|..+...+|.|||+.|||++|.....+|+||.+++.+. ..+.++++||||+|.+ ....|||||
T Consensus 563 evikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs---~rl~l~~~rHp~lE~Q--d~~~fIpNd 637 (902)
T KOG0219|consen 563 EIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGS---KRLELKQSRHPVLEGQ--DEIPFIPND 637 (902)
T ss_pred HHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccch---hHHHHHhcccchhhcc--ccCCCCCCc
Confidence 99999999999999999999999999999999987788999999998643 3688999999999964 345799999
Q ss_pred cccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHH
Q 001187 1019 ITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETA 1098 (1129)
Q Consensus 1019 i~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~ 1098 (1129)
+.+.. ...++++||||||||||||+||+|.+++||||||||||++|.++++|.|++|.|+.|++.+|.||||+||.+++
T Consensus 638 v~le~-~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta 716 (902)
T KOG0219|consen 638 VVLEK-GKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMAEMLETA 716 (902)
T ss_pred ccccc-CCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHHHHHHHH
Confidence 99986 46799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHhhhC
Q 001187 1099 LMLSSATRNSLVVLDELGRGTSTSDGQAIAS 1129 (1129)
Q Consensus 1099 ~il~~at~~sLvllDElGRGTst~DG~AIA~ 1129 (1129)
.||+.||++||||+|||||||||+||++||.
T Consensus 717 ~Ilr~at~~SliiiDELGRGTSt~DGfgiAw 747 (902)
T KOG0219|consen 717 SILRRATKNSLIIIDELGRGTSTYDGFGIAW 747 (902)
T ss_pred HHHHhcCCCcEEEEeccCCCceeccCccHHH
Confidence 9999999999999999999999999999983
No 7
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1e-73 Score=657.54 Aligned_cols=606 Identities=24% Similarity=0.324 Sum_probs=457.2
Q ss_pred CCcEEEEEEecCCCCCCCCCCcEEEEEEEEccCCeEEEEEecCcchhHHHHHHHHccCccEEEecCCCCChHHHHHHHhh
Q 001187 451 DASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRH 530 (1129)
Q Consensus 451 ~~~yllaI~e~~~~~~~~~~~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIl~~~~~ls~~t~~~l~~~ 530 (1129)
....++||+|.++. ...+||+|.+|+.++++++++|.|+..|.++.+.|.-+.|-||+++....-....+++...
T Consensus 102 ~~~v~~~v~e~r~~-----~~~~Ig~~~~~~~~~q~~l~~f~dst~y~~v~~~l~i~s~~ei~i~~~~~a~~~skl~~~~ 176 (867)
T KOG0220|consen 102 SPSVIVAVVEGRGL-----ARGEIGMASIDLKNPQIILSQFADSTTYAKVITKLKILSPLEIIISNTACAVGNSKLLFTL 176 (867)
T ss_pred CCceEEEEEecCCc-----ccceeEEEEecCCCCceehhhhhccchhHHHHhHhhccChhheeecccccccchHHHHHHH
Confidence 34578999998754 4678999999999999999999999999999999999999999999876655444443321
Q ss_pred c--CCCccccccCCccccChhhHHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHH
Q 001187 531 T--RNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSAL 608 (1129)
Q Consensus 531 ~--~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~al~Al 608 (1129)
. ..+-++-.--...+|..+++++.+..++....+ -++.+++ +..++++|+
T Consensus 177 ~~e~~~~v~~~~~s~k~fns~~gl~~i~~~~~~~~s------------------------~vle~i~----~k~~al~a~ 228 (867)
T KOG0220|consen 177 ITENFKNVNFTTISRKYFNSTKGLEYIEQLCIAEFS------------------------TVLEEIQ----SKTYALGAA 228 (867)
T ss_pred HhhcccccceeehhhhhcCchhhHHHHHHHHhhhhH------------------------HHHHHHH----HHHHHHHHH
Confidence 1 011111011123556677777777766543111 1233443 357999999
Q ss_pred HHHHHHHHHhccchhhhcccceeecCCCCCccCCCCCeeecCHHHHHhccCcccccCCCCcccHHHHHhhhcChHHHHHH
Q 001187 609 GGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLL 688 (1129)
Q Consensus 609 gall~YL~~~~l~~~ll~~~~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~c~T~~GkRlL 688 (1129)
+++++|+...... +....+ + .+...+..+.|.||..+.++|||+.|.. -....+|++++|+|.|++|.|.|
T Consensus 229 a~llky~~~~~~~--~~~~~s---l---ri~~~gs~nT~~id~~~~~~lelV~~~~-~kn~~~l~~vl~~T~t~~g~r~l 299 (867)
T KOG0220|consen 229 AALLKYVEEIQSS--VYAPKS---L---RICFQGSENTAMIDSSSAQSLELVINNQ-YKNNHTLFGVLNYTKTPGGYRRL 299 (867)
T ss_pred HHHHHHHHHHHHh--hhccce---e---EEEeecccceeeeecccccceEEechhh-hhcccceeeeeeeeecccchhhH
Confidence 9999999976541 221111 1 1223345678999999999999999874 34456999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccCC-CCccchhhHHHHHHHHHH
Q 001187 689 RTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGR-NSNKVVLYEDAAKKQLQE 767 (1129)
Q Consensus 689 r~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~-~~~~~~~~~~~~~~~l~~ 767 (1129)
|..+++||+|...|+.||+++++|.+ +.++...+|..|++++|++++++++......... .....+.+ +..
T Consensus 300 Rssilqpl~d~~ti~~rleaiqeL~a-~~~L~~~Lr~~~k~~~dld~~~s~~~~~~~~~~i~~~~s~I~~-------~~~ 371 (867)
T KOG0220|consen 300 RSSILQPLTDIETINMRLEAIQELLA-DEELFFGLRSVIKRFLDLDQLLSVLVQIPTQDTVNAAESKINN-------LIY 371 (867)
T ss_pred HhhhcccccchhhhhHHHHHHHHHhc-CchHhhhhHHHHhhhhhHHHHHHHHHhhhhHHhhhcchhHHHH-------HHH
Confidence 99999999999999999999999997 5678889999999999999999998643211000 00000111 111
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchh--------hhcCCCCeeeCCCCC
Q 001187 768 FISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWV--------EANNSGRIIPHGGVD 839 (1129)
Q Consensus 768 ~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~--------~~~~~g~ii~~~g~d 839 (1129)
+..+|. ....+...+.+..+..+....... ..+.+..+.+.+.+.|+-. ...+......+.+++
T Consensus 372 Lk~tL~-------lv~~~~~al~~~~s~~~~e~~~~~-~~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~ 443 (867)
T KOG0220|consen 372 LKHTLE-------LVDPLKIALKNCNSNLLREYYGSF-KDKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNIN 443 (867)
T ss_pred HHHHHH-------HHHHHHHHHhhchhHHHHHHHHHh-cchHHHHHHHHHHHHhhHHHHhccchhhhhccceeeeccccc
Confidence 111111 111111111111112121111100 0122333334444444311 112334455688999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEeCCceEEEEcccc----ccCCCCCcEEEeeeecceEEEeChhH
Q 001187 840 MDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPES----LRGSVPRDYELRSSKKGFFRYWTPNI 915 (1129)
Q Consensus 840 ~~lD~~~~~l~~l~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~iev~~~----~~~~vp~~~~~~ss~k~~~ry~tp~l 915 (1129)
..+|-+++.+.++..+..+...+..+.+ ...+.+......||.+.++.. ....+|..|+..+..+++++|+|..+
T Consensus 444 ~~LDiaR~ty~ei~~~~~~~i~~l~E~~-~~nl~~~f~sarGF~~ri~~~~~~~~~~~lP~~fi~~~~~~~~~~~~s~~~ 522 (867)
T KOG0220|consen 444 GFLDIARRTYTEIVDDIAGMISQLGEKF-SLNLRLSFSSARGFFIRITTDCIALPSDTLPSEFIKISKVKNSYSFTSADL 522 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-CccccccccccccEEEEeeccccccccccCchhhhhhhhhcceeeechHHH
Confidence 9999999999998887777666665555 334444333446788877765 24678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCCCCCCCcEE
Q 001187 916 KKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYIS 995 (1129)
Q Consensus 916 ~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~ 995 (1129)
.+++.++.+.-.++......++..+++.+.+|.+.+..+.++++.||+|+|||++... ..||||+|.+ .|.
T Consensus 523 ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~--~~y~~P~fT~-------sla 593 (867)
T KOG0220|consen 523 IKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTL--SDYVRPEFTD-------SLA 593 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcc--ccccccccCC-------cee
Confidence 9999999999999988888999999999999999999999999999999999999874 3799999985 389
Q ss_pred EeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhh
Q 001187 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1129)
Q Consensus 996 i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~t 1075 (1129)
|++||||+||.. ..+.+|.||+.+.. ..++.|||||||+||||||||+|+++|||||||||||.+|.+++|+|||+
T Consensus 594 I~qGRHPILe~i--~~ek~i~N~t~~t~--~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFt 669 (867)
T KOG0220|consen 594 IKQGRHPILEKI--SAEKPIANNTYVTE--GSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFT 669 (867)
T ss_pred eccCCCchhhhh--cccCcccCcceeec--ccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchhhccchHHHHHHH
Confidence 999999999974 45679999999985 46899999999999999999999999999999999999999999999999
Q ss_pred ccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1076 rig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
|||..|++..+.|+||.||+|+|.|+++|+.+|||+||||||||||.||+||+
T Consensus 670 Rmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiait 722 (867)
T KOG0220|consen 670 RMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAIT 722 (867)
T ss_pred HhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhH
Confidence 99999999999999999999999999999999999999999999999999997
No 8
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=4.6e-68 Score=600.07 Aligned_cols=493 Identities=27% Similarity=0.393 Sum_probs=405.9
Q ss_pred hhHHHHHHHHHHHHHHHhccchhhhcccceeecCCCCCccCCCCCeeecCHHHHHhccCcccccC------CCCc-ccHH
Q 001187 601 GSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRS------GDSS-GTLY 673 (1129)
Q Consensus 601 ~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~------g~~~-gSL~ 673 (1129)
...++.|+|+++.+|.+..+...+..+ +|+ -|+.++..+...+.|.||.+|+..|+||...+. +... -|||
T Consensus 193 i~~~~r~~g~ll~fl~~~rigv~l~~~-~v~-~pI~gik~f~l~~lv~iD~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf 270 (849)
T KOG0221|consen 193 IEAVVRALGGLLKFLGRRRIGVELEDY-NVS-VPILGIKKFMLTHLVNIDQNTISALQIFPSESHPSKVKSGLKEGLSLF 270 (849)
T ss_pred hHHHHHhhhhHHhhcccceeeeeeccc-ccc-ccccceeEEeecceeeeccchHHHHHhcccccccchhhhhhhcchhHH
Confidence 357789999999999988766544332 222 234556666677889999999999999987654 1112 2999
Q ss_pred HHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHc-CCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCc
Q 001187 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRG-VNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSN 752 (1129)
Q Consensus 674 ~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~-~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~ 752 (1129)
+++|+|.+..|+|+||.|+.+|++|..+|..||++|++|+. .|......|.+.|+++||+--++.|+..+..
T Consensus 271 ~l~n~c~s~~g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~t------- 343 (849)
T KOG0221|consen 271 GLLNRCHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGHT------- 343 (849)
T ss_pred HHHHHHhhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCCc-------
Confidence 99999999999999999999999999999999999999874 4667778899999999999999999964322
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchhhhcCCCCe
Q 001187 753 KVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI 832 (1129)
Q Consensus 753 ~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~i 832 (1129)
++. .+..|.+++...-.+.++|.++..-. .+.+... ...+.++.+++..+...+|+..+..++++
T Consensus 344 ~l~--------~W~~~~stv~~~~~i~~~~rslp~s~------~~~~~~~-~~~~~~l~eia~~~g~vIdF~~S~~~~r~ 408 (849)
T KOG0221|consen 344 KLS--------DWQVLYSTVYSALGIRDACRSLPQSI------QLFRDIA-QEFSDDLHEIASLIGKVIDFEGSLAENRF 408 (849)
T ss_pred eec--------hHHHHHHHHHHHHHHHHHHHhCccch------hhhhHHH-HHHHHHHHHHHHHhhheeccccccccceE
Confidence 122 23444555555455666666543211 1111110 01124566667777888999999999999
Q ss_pred eeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCceEEEeCCceEEEEccccccCCCCC----cEEEeeeecc
Q 001187 833 IPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGD--TSITYVTIGKDLYLLEVPESLRGSVPR----DYELRSSKKG 906 (1129)
Q Consensus 833 i~~~g~d~~lD~~~~~l~~l~~~L~~~l~~~~~~l~~--~~i~~~~~~~~~y~iev~~~~~~~vp~----~~~~~ss~k~ 906 (1129)
.+.+|+|+++|+.+..+..+..-|.+..++....+.. +++..+.+...||++.||.-...-..+ .|..+.....
T Consensus 409 Tv~~giD~elDE~r~~y~~lp~~Lt~vAr~e~~~L~~~~psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E 488 (849)
T KOG0221|consen 409 TVLPGIDPELDEKRRRYMGLPSFLTEVARKELENLDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEE 488 (849)
T ss_pred EecCCCChHHHHHHHHHccchHHHHHHHHHHHHhhCCCCCceeEEEeeceeeEEecccccchhhcCCcccchHHHhcccc
Confidence 9999999999999999999999998888776665554 467777788899999998753222222 3777777778
Q ss_pred eEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCC
Q 001187 907 FFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS 986 (1129)
Q Consensus 907 ~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~ 986 (1129)
..+|.+...++|.+.+.+..-++...+..|+-.|-.++......+.++...+++||+|+|||.+|..+ +|.||.++++
T Consensus 489 ~l~~rnart~eLD~~~GDIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~--gy~~P~lv~e 566 (849)
T KOG0221|consen 489 KLHYRNARTKELDALLGDIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADY--GYSRPRLVPE 566 (849)
T ss_pred eeEeecccHHhHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCccccH
Confidence 88999999999999999998888888888999999999999999999999999999999999999854 7999999963
Q ss_pred CCCCCCcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcc
Q 001187 987 CSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFE 1066 (1129)
Q Consensus 987 ~~~~~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~ 1066 (1129)
.-.++|++||||++|. ...+||||++.+++ +++|+.+|||||.+|||.||||+||+|+||||||||||+.|+
T Consensus 567 ----~~il~I~ngrh~l~e~---~~dtfvPNst~igg-dkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~ 638 (849)
T KOG0221|consen 567 ----VLILRIQNGRHPLMEL---CADTFVPNSTEIGG-DKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAE 638 (849)
T ss_pred ----HHHHHHHcCChhHHHH---HHHhcCCCceeecC-CCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhh
Confidence 3347899999999985 24689999999997 679999999999999999999999999999999999999999
Q ss_pred cchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhh
Q 001187 1067 ISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1067 l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AI 1127 (1129)
++++|+|||||+..+.+..|+||||..+.++|.+|++||.+|||||||+|+||.|.||.++
T Consensus 639 IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsL 699 (849)
T KOG0221|consen 639 IGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSL 699 (849)
T ss_pred cchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987
No 9
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=1e-55 Score=551.23 Aligned_cols=408 Identities=22% Similarity=0.333 Sum_probs=338.1
Q ss_pred HHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCcc
Q 001187 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNK 753 (1129)
Q Consensus 674 ~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~ 753 (1129)
.+-++|.|++|+|+|++ ++|+.|++.|+.||+.|+++.. .+.......|.+++|+++++.|+..++..
T Consensus 17 ~l~~~~~t~~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~---~~~~~~~~~l~~~~Di~~~l~r~~~g~~l------- 84 (782)
T PRK00409 17 QLKTFAASELGKEKVLQ--LDPETDFEEVEELLEETDEAAK---LLRLKGLPPFEGVKDIDDALKRAEKGGVL------- 84 (782)
T ss_pred HHHhHcCCHHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH---HHHhcCCCCCCCCccHHHHHHHHhCCCCC-------
Confidence 44579999999999999 5899999999999999998862 12223344688999999999999642211
Q ss_pred chhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchhhhcCCCCee
Q 001187 754 VVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRII 833 (1129)
Q Consensus 754 ~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~ii 833 (1129)
...+|.++...|..+..+...+.... .....+.|..++. .++.+..+.+.|..+|| .+|.+
T Consensus 85 -------~~~eL~~i~~~l~~~~~l~~~l~~~~---~~~~~~~L~~~~~---~l~~~~~l~~~i~~~id-----~~g~i- 145 (782)
T PRK00409 85 -------SGDELLEIAKTLRYFRQLKRFIEDLE---EEEELPILEEWVA---KIRTLPELEQEIHNCID-----EEGEV- 145 (782)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHhcc---cccchhHHHHHHH---cCcCcHHHHHHHHHHhC-----CCCEE-
Confidence 12356666666665555443322110 0011234444443 34566677778888886 35554
Q ss_pred eCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCceEEEeCCceEEEEccccccCCCCCcEEEeeeecceEEE
Q 001187 834 PHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGD---TSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRY 910 (1129)
Q Consensus 834 ~~~g~d~~lD~~~~~l~~l~~~L~~~l~~~~~~l~~---~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry 910 (1129)
+++++++|+.++..++++++++.+.+++..+..+. -+-.++++++++|+|+|+...++.+|+.| +..+.+|.++|
T Consensus 146 -~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r~~r~~i~vk~~~~~~~~g~v-~~~s~sg~t~y 223 (782)
T PRK00409 146 -KDSASEKLRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRNDRYVLPVKAEYKHAIKGIV-HDQSSSGATLY 223 (782)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEECCEEEEEechhhhccCCCce-eeEECCCCEEE
Confidence 79999999999999999999998888775543321 11246778889999999999988898666 45666889999
Q ss_pred eChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCCCC
Q 001187 911 WTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSN 989 (1129)
Q Consensus 911 ~tp~-l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~ 989 (1129)
++|. +.++++++.+++.++..++..++.+|...+.++...|..+++++++|||++|+|.+|..+ +||+|.|++
T Consensus 224 ~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~--~~~~P~~~~---- 297 (782)
T PRK00409 224 IEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKAL--KATFPLFND---- 297 (782)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCccceEcC----
Confidence 9998 999999999999999999999999999999999999999999999999999999999865 699999974
Q ss_pred CCCcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCC-cccc
Q 001187 990 EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEIS 1068 (1129)
Q Consensus 990 ~~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~-a~l~ 1068 (1129)
...|.|+++|||+++. ..|||||+.++. ..++++||||||||||||||++|++++|||+||||||++ +.++
T Consensus 298 -~~~i~l~~~rHPll~~-----~~~Vpndi~l~~--~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~ 369 (782)
T PRK00409 298 -EGKIDLRQARHPLLDG-----EKVVPKDISLGF--DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIP 369 (782)
T ss_pred -CCcEEEcCcCCceecc-----CceECceeEECC--CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcccc
Confidence 3469999999999964 369999999985 368999999999999999999999999999999999996 7999
Q ss_pred hhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1069 PVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1069 ~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
+||+||++||+.|++..+.|||+.+|.+++.|++.++.++||||||+|+||++.+|.+||
T Consensus 370 ~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala 429 (782)
T PRK00409 370 VFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALA 429 (782)
T ss_pred ccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986
No 10
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=6.4e-49 Score=488.94 Aligned_cols=403 Identities=24% Similarity=0.309 Sum_probs=331.0
Q ss_pred HHHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCc
Q 001187 673 YAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSN 752 (1129)
Q Consensus 673 ~~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~ 752 (1129)
=.+.++|.|++|++++++ +.|+.+.+.|+.||+.++++.... . .-.|.+++|+++++.|+..+....
T Consensus 16 ~~l~~~~~t~~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~----~--~~~l~~~~di~~~l~r~~~g~~l~----- 82 (771)
T TIGR01069 16 ENLLKQTFTPLGKEDAIG--LKPPKSVEESKEIIIKLTALGSIE----N--NVRFFGFEDIRELLKRAELGGIVK----- 82 (771)
T ss_pred HHHHHHcCCHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhh----c--cCCcCCCccHHHHHHHHhcCCcCC-----
Confidence 345689999999999999 799999999999999999987421 1 346889999999999985322111
Q ss_pred cchhhHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchhhhcCCCC
Q 001187 753 KVVLYEDAAKKQ-LQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGR 831 (1129)
Q Consensus 753 ~~~~~~~~~~~~-l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~ 831 (1129)
..+ |..+...|.....+...... ....+.|..+.. .++.+..+++.|..+|| .+|.
T Consensus 83 ---------~~e~l~~i~~~l~~~~~l~~~l~~------~~~~~~L~~~~~---~l~~~~~l~~~i~~~id-----~~g~ 139 (771)
T TIGR01069 83 ---------GLEYILVIQNALKTVKHLKVLSEH------VLDLEILFHLRL---NLITLPPLENDIIACID-----DDGK 139 (771)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHhc------cccchHHHHHHh---cCCCcHHHHHHHHHHhC-----CCCE
Confidence 112 44444444443333322211 011233444432 24456667778888886 4565
Q ss_pred eeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCceEEEeCCceEEEEccccccCCCCCcEEEeeeecceE
Q 001187 832 IIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGD---TSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFF 908 (1129)
Q Consensus 832 ii~~~g~d~~lD~~~~~l~~l~~~L~~~l~~~~~~l~~---~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ 908 (1129)
+ +++.+++|+.++..++.++.++.+.++...+..+. .+-.++++++++|+|+|+...++++|+.++ ..+.+|.+
T Consensus 140 i--~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~it~r~~r~vipvk~~~~~~i~g~v~-~~S~sg~t 216 (771)
T TIGR01069 140 V--KDGASEELDAIRESLKALEEEVVKRLHKIIRSKELAKYLSDTIVTIRNGRYVLPLKSGFKGKIKGIVH-DTSSSGET 216 (771)
T ss_pred E--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCceEEEECCEEEEEeeHHHhhcCCCeEE-EEeCCCCE
Confidence 5 78999999999999999999998888765432211 112477888899999999999899987665 45678999
Q ss_pred EEeChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCC
Q 001187 909 RYWTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSC 987 (1129)
Q Consensus 909 ry~tp~-l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~ 987 (1129)
+|++|. +.++++++.+++.++..++..|+.+|...+.++...|..+++++++|||++|+|.+|..+ .+|+|.+.+.
T Consensus 217 ~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~--~~~~P~~~~~- 293 (771)
T TIGR01069 217 FYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKAV--KGEFPMPSFT- 293 (771)
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCeeceecCC-
Confidence 999998 999999999999999999999999999999999999999999999999999999999865 6899998742
Q ss_pred CCCCCcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCC-cc
Q 001187 988 SNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FE 1066 (1129)
Q Consensus 988 ~~~~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~-a~ 1066 (1129)
..|.++++|||+++. ..|||||+.++. ..++++||||||||||||||+++++++|||+||||||.. +.
T Consensus 294 ----~~i~l~~~rhPll~~-----~~~vp~di~l~~--~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~ 362 (771)
T TIGR01069 294 ----GKIILENARHPLLKE-----PKVVPFTLNLKF--EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSE 362 (771)
T ss_pred ----CCEEEccccCceecC-----CceEeceeEeCC--CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcccc
Confidence 379999999999863 259999999975 247899999999999999999999999999999999976 68
Q ss_pred cchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1067 ISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1067 l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
+++||+||+++|..+++..+.|||+.||.+++.|+..+++++||||||+|+||++.+|.+||
T Consensus 363 ~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala 424 (771)
T TIGR01069 363 IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALA 424 (771)
T ss_pred ccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 11
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=5.5e-40 Score=357.87 Aligned_cols=144 Identities=49% Similarity=0.774 Sum_probs=121.2
Q ss_pred ccceeecCCCCCCCCcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcC
Q 001187 978 TCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1129)
Q Consensus 978 ~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG 1057 (1129)
||||+|+++ ..|.|+++|||+++.. +....|||||+.++. ...++++||||||||||||||+||++++|||+|
T Consensus 1 y~~P~~~~~-----~~l~i~~~~HPll~~~-~~~~~~v~ndi~~~~-~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G 73 (235)
T PF00488_consen 1 YCRPKISEE-----KSLKIKEGRHPLLEEK-LENKKFVPNDIELSN-NKSRIIIITGPNMSGKSTFLKQIGLIVILAQIG 73 (235)
T ss_dssp EB-EEEEST-----TEEEEEEE--TTHHHH-TTTSSC--EEEEESS-SSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT
T ss_pred CcccEEcCC-----CCEEEEeccCCEEecc-ccCCceecceeecCC-CceeEEEEeCCCccchhhHHHHHHHHhhhhhcC
Confidence 799999862 3899999999999874 345789999999986 334799999999999999999999999999999
Q ss_pred CeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1058 ADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1058 ~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
|||||+++.++++|+|||||+..|++..|.|+|+.||.+++.||+.++++|||||||+||||++.||.|||
T Consensus 74 ~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~ 144 (235)
T PF00488_consen 74 CFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIA 144 (235)
T ss_dssp --BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHH
T ss_pred ceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
No 12
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=2e-36 Score=344.16 Aligned_cols=306 Identities=33% Similarity=0.435 Sum_probs=237.4
Q ss_pred cccHHHHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccC
Q 001187 669 SGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANG 748 (1129)
Q Consensus 669 ~gSL~~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~ 748 (1129)
.||||++||+|+|++|+|+||+||++|++|.++|++||++|++|.. +..+...++..|++++|++|++.++..+. .
T Consensus 1 ~~sL~~~l~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~-~~~l~~~l~~~L~~~~Di~~~l~~~~~~~-~-- 76 (308)
T smart00533 1 KGSLFELLNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVE-NPELRQKLRQLLKRIPDLERLLSRIERGR-A-- 76 (308)
T ss_pred CCCHHHHHccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHh-ChHHHHHHHHHHccCCcHHHHHHHHHcCC-C--
Confidence 4799999999999999999999999999999999999999999996 55677889999999999999999996321 0
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhch-hhhc
Q 001187 749 RNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDW-VEAN 827 (1129)
Q Consensus 749 ~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~-~~~~ 827 (1129)
...++..+..++..+..+...+. ......+..++... ...+...+..+.+.++. ....
T Consensus 77 ------------~~~el~~l~~~l~~~~~l~~~l~-------~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 135 (308)
T smart00533 77 ------------SPRDLLRLYDSLEGLKEIRQLLE-------SLDGPLLGLLLKVI--LEPLLELLELLLELLNDDDPLE 135 (308)
T ss_pred ------------CHHHHHHHHHHHHHHHHHHHHHH-------hcCcHHHHHHHHhh--ccchHHHHHHHHHHhccCCccc
Confidence 12345555555555444433221 11111111111000 00111222222222211 1111
Q ss_pred CCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEeCCceEEEEccccccCCCCCcEEEeeeecce
Q 001187 828 NSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907 (1129)
Q Consensus 828 ~~g~ii~~~g~d~~lD~~~~~l~~l~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~ 907 (1129)
.+....+++|++++||.++..+++++.+++++++++.+.++...+++..+...+|+|+||....+++|++|+..+++++.
T Consensus 136 ~~~~~~i~~~~s~~Ld~lr~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~~~~s~s~~~ 215 (308)
T smart00533 136 VNDGGLIKDGFDPELDELREKLEELEEELEELLKKEREELGIDSLKLGYNKVHGYYIEVTKSEAKKVPKDFIRRSSLKNT 215 (308)
T ss_pred ccCCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEeccEEEEEEecchhhccCChHHHHHhhhccc
Confidence 11112348999999999999999999999999998887777666666555667799999999888999999999999999
Q ss_pred EEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCC
Q 001187 908 FRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSC 987 (1129)
Q Consensus 908 ~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~ 987 (1129)
.+|.++++.++++++.++++++..++..+++++...+.++...|..+++++++|||++|+|.+|..+ +||||+|++
T Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~--~~~~P~i~~-- 291 (308)
T smart00533 216 ERFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEG--NYVRPEFVD-- 291 (308)
T ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCcCCeeCC--
Confidence 9999999999999999999999999999999999999999999999999999999999999999854 699999985
Q ss_pred CCCCCcEEEeccCCCcccc
Q 001187 988 SNEEPYISAKSLGHPVLRS 1006 (1129)
Q Consensus 988 ~~~~~~l~i~~~RHP~le~ 1006 (1129)
.+.|.|++||||+++.
T Consensus 292 ---~~~l~i~~~rHPlle~ 307 (308)
T smart00533 292 ---SGELEIKNGRHPVLEL 307 (308)
T ss_pred ---CCCEEEeeCCCCcccC
Confidence 3579999999999974
No 13
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.7e-34 Score=348.75 Aligned_cols=393 Identities=24% Similarity=0.352 Sum_probs=312.1
Q ss_pred HHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHcCCchhHHHHH--HhcCCCCCHHHHHHHHhccccccCCCCc
Q 001187 675 QLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFR--KALSRLPDMERLLARLFASSEANGRNSN 752 (1129)
Q Consensus 675 lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr--~~L~~lpDleRll~ri~~~~~~~~~~~~ 752 (1129)
+..++.|+.|+-+|+. +.|..+.+.|+..++-+.++... ... . -.+.++.|+...+.++..++..
T Consensus 16 ~~~~~~s~~g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~----~~~-~g~~~~~~l~~i~~~l~~~e~g~~l------ 82 (753)
T COG1193 16 LASYAQSSLGLEELKN--LKPRTDLELIEEELSETAEALDI----LED-EGLPPLGGLNDVSEALGRLEKGGRL------ 82 (753)
T ss_pred HHHhccCHHHHHHHHh--cCccccHHHHHHHHHHHHHHHHH----Hhc-cCCCCchhhhhhHHHHHHHhhcccC------
Confidence 4589999999999999 78999999999999998877531 000 0 1366778888888888522211
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchhhhcCCCCe
Q 001187 753 KVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI 832 (1129)
Q Consensus 753 ~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~~~~g~i 832 (1129)
....+..+...|+++..+..+...+..+. ...+. .++.+..+...+...+| ..|.+
T Consensus 83 --------~~~el~~i~~~l~~~~~lkr~~~~~e~~~----~~~~~-------~~~~~~~l~~~i~~~id-----~~g~i 138 (753)
T COG1193 83 --------HVEELLEISDFLRGFRALKRAIKKLERIK----RTLAL-------ALIELSDLELEINIPID-----DDGLI 138 (753)
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHH-------hhhcchHHHHHHhhhhc-----ccccc
Confidence 12356666667777766655544332221 11111 23445555555566665 44555
Q ss_pred eeCCCCChhHHHHHHHHHHHHHHHHHHHHH----H-HHHhCCCCceEEEeCCceEEEEccccccCCCCCcEEEeeeecce
Q 001187 833 IPHGGVDMDYDSACKKVKEIEASLTKHLKE----Q-RKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907 (1129)
Q Consensus 833 i~~~g~d~~lD~~~~~l~~l~~~L~~~l~~----~-~~~l~~~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~ 907 (1129)
.+..++.++.++..++.++.++.+.++. . ...+.+ .++++++++|+++|...+++.+++..+- .+..|.
T Consensus 139 --~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~~~~~~L~e---~~v~~r~~r~vlpvk~~fk~~i~giv~d-~sssg~ 212 (753)
T COG1193 139 --KDRASFELDAIRRQLRDLEEEIRDKLESLIRSKEAKYLQD---RIVTTRDGREVLPVKAEFKGAIKGIVHD-TSSSGA 212 (753)
T ss_pred --cccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHhhhh---ceEeccCCeEEeHHHHHhhhhcCceEee-cccccC
Confidence 5677888998888876655555444443 3 334433 3677888999999999999999877654 455788
Q ss_pred EEEeChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCC
Q 001187 908 FRYWTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS 986 (1129)
Q Consensus 908 ~ry~tp~-l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~ 986 (1129)
+.|..|. +..+++++.++..+.+.+...+++.+...+.++...+..+...+++||++.+.+.++... ..+.|.|.+
T Consensus 213 tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~--~~v~P~~~~- 289 (753)
T COG1193 213 TLYIEPRSVVKLNNELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKAL--KGVKPDFSN- 289 (753)
T ss_pred eeeecchHHHhhccHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHhh--ccCCCccCC-
Confidence 9999997 899999999999998889999999999999999999999999999999999999999864 578999973
Q ss_pred CCCCCCcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCc-
Q 001187 987 CSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIF- 1065 (1129)
Q Consensus 987 ~~~~~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a- 1065 (1129)
...|.+.++|||++.. -||||+.++. .-+.++|||||+||||+.||++|++++|||+|.++||.+.
T Consensus 290 ----~~~l~l~~~~HPll~~-------~v~~~i~~~~--e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gs 356 (753)
T COG1193 290 ----DGVLELLDARHPLLKE-------DVPNDLELGE--ELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGS 356 (753)
T ss_pred ----CceEEeccccCccCcc-------cccccccccc--ccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCC
Confidence 3479999999999964 2999999985 3578999999999999999999999999999999999876
Q ss_pred ccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1066 EISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1066 ~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
++++|+.||..||..++|.+..|||..+|..++.||..++ |||++||||.||++.+|.|+|
T Consensus 357 ei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLa 417 (753)
T COG1193 357 ELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALA 417 (753)
T ss_pred cchhHHHhhhccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHH
Confidence 8999999999999999999999999999999999996555 999999999999999999987
No 14
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=6.3e-34 Score=306.29 Aligned_cols=131 Identities=61% Similarity=0.948 Sum_probs=123.1
Q ss_pred EeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhh
Q 001187 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1129)
Q Consensus 996 i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~t 1075 (1129)
|+++|||+++.. ....|||||+.++. ..+++++||||||+|||||||+++++++|||+||||||++++++++|+||+
T Consensus 2 ~~~~rHPll~~~--~~~~~v~ndi~l~~-~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~ 78 (218)
T cd03286 2 FEELRHPCLNAS--TASSFVPNDVDLGA-TSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFT 78 (218)
T ss_pred cccccCCEEecc--cCCCeEEeeeEEee-cCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEE
Confidence 689999999742 23579999999986 346899999999999999999999999999999999999999999999999
Q ss_pred ccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhhhC
Q 001187 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAS 1129 (1129)
Q Consensus 1076 rig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AIA~ 1129 (1129)
|||..|++..|.|||+.||.+++.||+.++++|||||||+||||++.||.+||.
T Consensus 79 ~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ 132 (218)
T cd03286 79 RIGARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAH 132 (218)
T ss_pred ecCcccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999973
No 15
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.97 E-value=1.4e-32 Score=296.67 Aligned_cols=132 Identities=53% Similarity=0.759 Sum_probs=124.1
Q ss_pred EEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhh
Q 001187 994 ISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRI 1073 (1129)
Q Consensus 994 l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i 1073 (1129)
|+|+++|||+++. .....|||||+.+.. ..+++++||||||+|||||||+++++++|||+||||||+.++++++|+|
T Consensus 1 ~~i~~~rHPlle~--~~~~~~v~n~i~~~~-~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i 77 (222)
T cd03287 1 ILIKEGRHPMIES--LLDKSFVPNDIHLSA-EGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSV 77 (222)
T ss_pred CeeecccCCEEec--cCCCCEEEEeEEEEe-cCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceE
Confidence 4689999999985 233479999999986 3568999999999999999999999999999999999999999999999
Q ss_pred hhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1074 FVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1074 ~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
|+|||+.|++..|.|||+.||.+++.|++.+++++||||||+|+||++.||.+|+
T Consensus 78 ~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~ 132 (222)
T cd03287 78 LTRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIA 132 (222)
T ss_pred EEEecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999986
No 16
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=99.97 E-value=1.4e-31 Score=259.61 Aligned_cols=107 Identities=37% Similarity=0.683 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHhCCCeEEEEeeCceEEEehhhHHHHhhhcceeeec----CC--CCcCCcCcccHhHHHHHHHHcCCeE
Q 001187 328 SEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK----GE--QPHCGFPERNFSMNVEKLARKGYRV 401 (1129)
Q Consensus 328 TP~~~Qyw~iK~~~~D~vlffkvGkFYEly~~DA~i~a~~L~L~~t~----g~--~p~~GfPe~sl~~y~~kLV~~GyKV 401 (1129)
|||++|||+||++|||+|+|||+|+|||+|++||+.+++.|+++++. ++ .||||||.++++.|+++||++||||
T Consensus 1 Tp~~~~y~~lk~k~~d~i~lf~~G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~gfp~~~l~~~l~~Ll~~G~~V 80 (113)
T PF01624_consen 1 TPFEQQYWELKEKYPDTIVLFQVGDFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMAGFPKSQLDKYLKKLLEAGYRV 80 (113)
T ss_dssp -HHHHHHHHHHCTSTTSEEEEEETTEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEEEEEGGGHHHHHHHHHHTT-EE
T ss_pred ChHHHHHHHHHhhCCCeEEEEEcCCEEEEEccCHHHHHHhccceeeeccccccccccEecccHHHHHHHHHHHHHcCCEE
Confidence 89999999999999999999999999999999999999999999873 22 6999999999999999999999999
Q ss_pred EEEecCCChhHHHHHhhhcCCCCceeeeeEEEEeeCcceeecc
Q 001187 402 LVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE 444 (1129)
Q Consensus 402 avvEQ~Et~~~~~~r~k~~~~~~kvv~Rev~~V~TpGTl~d~~ 444 (1129)
+||||+|++... +++++|+|++|+||||++|++
T Consensus 81 ~i~~q~~~~~~~----------~~~~~R~v~~i~TpGt~~~~~ 113 (113)
T PF01624_consen 81 AIYEQVETPSET----------KGLIEREVTRIYTPGTLIDDE 113 (113)
T ss_dssp EEEEE-S-HHHH----------SSS--EEEEEEEBTTS-TST-
T ss_pred EEEEecCCcccc----------CCCccEEEEEEECcCeecCcC
Confidence 999999998642 258999999999999999864
No 17
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.96 E-value=3.1e-30 Score=279.53 Aligned_cols=130 Identities=48% Similarity=0.798 Sum_probs=122.7
Q ss_pred EeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhh
Q 001187 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1129)
Q Consensus 996 i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~t 1075 (1129)
|+++|||+++.. ....|||||+.++. ..+++++||||||||||||||+||++++|||+||||||+.+.++++|+||+
T Consensus 2 ~~~~~hpll~~~--~~~~~v~~~~~~~~-~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~ 78 (222)
T cd03285 2 LKEARHPCVEAQ--DDVAFIPNDVTLTR-GKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILA 78 (222)
T ss_pred ccccCCCEEecc--CCCCeEEeeEEEee-cCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEe
Confidence 679999999862 34579999999986 457899999999999999999999999999999999999999999999999
Q ss_pred ccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1076 rig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
++|..|++..+.|+||.||.+++.+++.+++++||||||+||||++.||.+++
T Consensus 79 ~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~ 131 (222)
T cd03285 79 RVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLA 131 (222)
T ss_pred eeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986
No 18
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.96 E-value=4.5e-30 Score=276.66 Aligned_cols=129 Identities=45% Similarity=0.738 Sum_probs=120.9
Q ss_pred EeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhh
Q 001187 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1129)
Q Consensus 996 i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~t 1075 (1129)
|+++|||+++.. ...|||||+.++. ...++++||||||+|||||||+++++++|||+|+||||..++++++|++|+
T Consensus 2 i~~~rHPll~~~---~~~~vpnd~~l~~-~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~ 77 (213)
T cd03281 2 IQGGRHPLLELF---VDSFVPNDTEIGG-GGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFT 77 (213)
T ss_pred cccccCCEEecc---CCceEcceEEecC-CCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeee
Confidence 789999999851 3479999999985 234899999999999999999999999999999999999999999999999
Q ss_pred ccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1076 rig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
+++..|++..+.|||+.||++++.++..++.++||||||+|+||++.||.+++
T Consensus 78 ~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~ 130 (213)
T cd03281 78 RMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLL 130 (213)
T ss_pred eeCCccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998885
No 19
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.96 E-value=1.2e-29 Score=271.25 Aligned_cols=129 Identities=46% Similarity=0.739 Sum_probs=122.0
Q ss_pred EeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhh
Q 001187 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1129)
Q Consensus 996 i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~t 1075 (1129)
|+++|||+++. ...+|||||+.++. ..+++++||||||+|||||||+++++++|||+||||||.+++++++|+||+
T Consensus 2 i~~~~hpll~~---~~~~~v~~~~~~~~-~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~ 77 (204)
T cd03282 2 IRDSRHPILDR---DKKNFIPNDIYLTR-GSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLS 77 (204)
T ss_pred cccccCCeEec---cCCcEEEeeeEEee-CCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeE
Confidence 67999999985 24579999999986 456899999999999999999999999999999999999999999999999
Q ss_pred ccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1076 rig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
+++..|++..+.|+|+.||.+++.|++.+++++||||||+|+||++.||.+|+
T Consensus 78 ~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~ 130 (204)
T cd03282 78 RLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAIS 130 (204)
T ss_pred ecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999875
No 20
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.95 E-value=1e-28 Score=266.66 Aligned_cols=131 Identities=53% Similarity=0.782 Sum_probs=121.8
Q ss_pred EEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhh
Q 001187 995 SAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIF 1074 (1129)
Q Consensus 995 ~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~ 1074 (1129)
+|+++|||+++.. .....|||||+.++.. .++++||||||+|||||||++|++++|||+|++|||..+.++++++||
T Consensus 1 ~i~~~~hp~~~~~-~~~~~~v~n~~~l~~~--~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~ 77 (216)
T cd03284 1 EIEGGRHPVVEQV-LDNEPFVPNDTELDPE--RQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIF 77 (216)
T ss_pred CcccccCCEEeec-cCCCceEeeeEEecCC--ceEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEe
Confidence 3789999999862 2235799999999863 489999999999999999999999999999999999999999999999
Q ss_pred hccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1075 VRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1075 trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
++|+..|++..|+|+|+.||.+++.++..+++++||||||+|+||++.||.+++
T Consensus 78 ~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~ 131 (216)
T cd03284 78 TRIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIA 131 (216)
T ss_pred ccCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998864
No 21
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.92 E-value=4.3e-25 Score=236.11 Aligned_cols=128 Identities=36% Similarity=0.603 Sum_probs=118.4
Q ss_pred EeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCC-cccchhhhhh
Q 001187 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEISPVDRIF 1074 (1129)
Q Consensus 996 i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~-a~l~~~d~i~ 1074 (1129)
|+++|||+++.. ..+|||||+.++. ..++++||||||+|||||||+++++.+|||+||||||.. +.++.+|++|
T Consensus 2 ~~~~~hp~~~~~---~~~~~~~~~~i~~--~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~ 76 (200)
T cd03280 2 LREARHPLLPLQ---GEKVVPLDIQLGE--NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIF 76 (200)
T ss_pred CcccCCCEEecc---CCceEcceEEECC--CceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEE
Confidence 789999999852 5679999999975 237999999999999999999999999999999999985 6789999999
Q ss_pred hccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1075 VRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1075 trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
++++..+++..+.|+|+.||+++..|+..+++++++|+||+++||++.++.+|+
T Consensus 77 ~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~ 130 (200)
T cd03280 77 ADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALA 130 (200)
T ss_pred EecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988774
No 22
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.91 E-value=4.8e-23 Score=219.95 Aligned_cols=91 Identities=47% Similarity=0.776 Sum_probs=79.8
Q ss_pred HHHHHhccCcccccCCCCcccHHHHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHcCCchhHHHHHHhcCCC
Q 001187 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRL 730 (1129)
Q Consensus 651 ~~Tl~~LEI~~~~~~g~~~gSL~~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~L~~l 730 (1129)
++|+++||||++..+|+.+||||++||+|.|++|+|+|++||++|++|++.|++||++|++|.. |..+...++..|+++
T Consensus 1 ~~Tl~~L~i~~~~~~~~~~~sL~~~ln~t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~-n~~~~~~~~~~l~~~ 79 (204)
T PF05192_consen 1 ANTLKSLEIFENSRSGKKKGSLFSLLNRTSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQ-NEELREELRSILKKI 79 (204)
T ss_dssp HHHHHHTTSSSBTTTSSSSTSHHHHH---SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHH-THHHHHHHHHHHTTC
T ss_pred ChhHHhccCCCCCCCCCCCCcHHHHHhcCCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH-hhhHhhhhhhhhhcc
Confidence 5899999999998888889999999999999999999999999999999999999999999996 667778999999999
Q ss_pred CCHHHHHHHHhc
Q 001187 731 PDMERLLARLFA 742 (1129)
Q Consensus 731 pDleRll~ri~~ 742 (1129)
+|+++++.++..
T Consensus 80 ~di~~~l~~l~~ 91 (204)
T PF05192_consen 80 PDIERILKRLRS 91 (204)
T ss_dssp -SHHHHHHHHHT
T ss_pred chHHHHHHHHHH
Confidence 999999999864
No 23
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.91 E-value=1.5e-24 Score=232.18 Aligned_cols=128 Identities=57% Similarity=0.816 Sum_probs=119.0
Q ss_pred EeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhh
Q 001187 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1129)
Q Consensus 996 i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~t 1075 (1129)
|+++|||+++.. ....+|||||+.++. +++++||||||||||||||+|+.+++++|+|+||||..+.++++|++|+
T Consensus 2 ~~~~~~p~l~~~-~~~~~~~~~~~~l~~---~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~ 77 (202)
T cd03243 2 IKGGRHPVLLAL-TKGETFVPNDINLGS---GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFT 77 (202)
T ss_pred cccccCCEEecc-ccCCceEeeeEEEcC---CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEE
Confidence 689999999742 123579999999985 4799999999999999999999999999999999999999999999999
Q ss_pred ccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhh
Q 001187 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1076 rig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AI 1127 (1129)
+++..+++..+.|+|+.||++++.|+..++.++++||||+++||++.++.++
T Consensus 78 ~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 78 RIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred EecCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988765
No 24
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.90 E-value=2.3e-24 Score=229.94 Aligned_cols=123 Identities=41% Similarity=0.579 Sum_probs=115.8
Q ss_pred EeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhh
Q 001187 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1129)
Q Consensus 996 i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~t 1075 (1129)
++++|||+++. .++|+||+++.. +++++||||||||||||||+|+.+++|||+|++|||..+.++ ++++|+
T Consensus 2 ~~~~~hp~~~~-----~~~v~n~i~l~~---g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~ 72 (199)
T cd03283 2 AKNLGHPLIGR-----EKRVANDIDMEK---KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFT 72 (199)
T ss_pred CcccCCCeecC-----CCeecceEEEcC---CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEE
Confidence 68999999984 369999999985 489999999999999999999999999999999999999998 899999
Q ss_pred ccCccchHhhcccchHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChHHHHhh
Q 001187 1076 RMGAKDHIMAGQSTFLTELSETALMLSSAT--RNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1076 rig~~d~i~~g~StF~~em~e~~~il~~at--~~sLvllDElGRGTst~DG~AI 1127 (1129)
++...|++..|.|+|..|+.++..+|..++ +++|+||||+++||++.++..+
T Consensus 73 ~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l 126 (199)
T cd03283 73 SIRVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAA 126 (199)
T ss_pred eccchhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHH
Confidence 999999999999999999999999999998 9999999999999999998765
No 25
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.89 E-value=1.3e-23 Score=222.05 Aligned_cols=100 Identities=63% Similarity=0.903 Sum_probs=97.4
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCc
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNS 1108 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~s 1108 (1129)
+++||||||||||||||+++++++|||+||||||+++.++++|++|++++..|++..+.|+|+.||.+++.++..+++++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHhhh
Q 001187 1109 LVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1109 LvllDElGRGTst~DG~AIA 1128 (1129)
|+||||+++||++.+|.+|+
T Consensus 81 llllDEp~~g~d~~~~~~~~ 100 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIA 100 (185)
T ss_pred EEEEecCCCCCCHHHHHHHH
Confidence 99999999999999998874
No 26
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.74 E-value=2.9e-18 Score=177.31 Aligned_cols=108 Identities=44% Similarity=0.572 Sum_probs=97.7
Q ss_pred EeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhH----------cCCeecCCCc
Q 001187 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ----------VGADVPAEIF 1065 (1129)
Q Consensus 996 i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQ----------iG~~VPA~~a 1065 (1129)
|..++||.+ ++|||+.+.. +++++|||||||||||+||++++++.|+| .|+++|+.++
T Consensus 2 i~~~~~~~~---------~~~~~i~~~~---~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 69 (162)
T cd03227 2 IVLGRFPSY---------FVPNDVTFGE---GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSA 69 (162)
T ss_pred ceeCCCCEE---------EeccEEecCC---CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEE
Confidence 567899986 7999999874 37999999999999999999999999999 9999999988
Q ss_pred ccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChHHHHhhh
Q 001187 1066 EISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT--RNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1066 ~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at--~~sLvllDElGRGTst~DG~AIA 1128 (1129)
.+ ||++++ .|.++.++..++.+|..++ +++|+||||+++||++.++.+|+
T Consensus 70 ~~-----i~~~~~--------lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~ 121 (162)
T cd03227 70 EL-----IFTRLQ--------LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA 121 (162)
T ss_pred EE-----ehheee--------ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 87 888776 7888999999999999876 89999999999999999999876
No 27
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A ....
Probab=99.37 E-value=5.5e-12 Score=126.09 Aligned_cols=130 Identities=26% Similarity=0.390 Sum_probs=84.7
Q ss_pred cEEEEEEecCCCCCCCCCCcEEEEEEEEccCCeEEEEEecCcchhHHHHHHHHccCccEEEecCCCCChHHHHHHHhhcC
Q 001187 453 SYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTR 532 (1129)
Q Consensus 453 ~yllaI~e~~~~~~~~~~~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIl~~~~~ls~~t~~~l~~~~~ 532 (1129)
|||+||+++. ....||+||+|++||+|++++|.| +++|.+.|.+++|+|||++.+..+......+.....
T Consensus 1 Nyl~aI~~~~-------~~~~~gla~~D~sTGe~~~~~~~d---~~~L~~~L~~~~P~EIi~~~~~~~~~~~~~~~~~~~ 70 (137)
T PF05188_consen 1 NYLAAIYEKN-------DEDSYGLAYIDLSTGEFYVTEFED---YSELKSELARLSPREIIIPEGFSSSDISALLSSLKN 70 (137)
T ss_dssp -EEEEEEEET-------CSSEEEEEEEETTTTEEEEEEEEC---HHHHHHHHHHH-ESEEEEETTCSHHHHHHHHHCCTT
T ss_pred CEEEEEEEec-------CCCEEEEEEEECCCCEEEEEEeCC---HHHHHHHHHhcCCeEEEEcCCCcccccchhhhhhcc
Confidence 6999999851 235699999999999999999998 899999999999999999988765433111211111
Q ss_pred CCccccccCCccccChhhHHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHH
Q 001187 533 NPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTL 612 (1129)
Q Consensus 533 ~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~al~Algall 612 (1129)
........+. .+++.....+.+..+|..... ...+ + ....+.+++|+|++|
T Consensus 71 ~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~---------------~~~~---~----------~~~~~~~~~Al~all 121 (137)
T PF05188_consen 71 SFFKVTETPS-WYFDSEFASEDIEEQFGVADL---------------DGFG---L----------EEDKELALSALGALL 121 (137)
T ss_dssp TCCEEEEETC-GGGSHHHHHHHHHHHCTSSST---------------CCCT---T----------GGGGHHHHHHHHHHH
T ss_pred ccceeeecch-hhhhhHHHHHHHHHhhccccc---------------cccC---c----------cCCCHHHHHHHHHHH
Confidence 1111112222 334555566666666632110 0000 0 013578999999999
Q ss_pred HHHHHhccc
Q 001187 613 FYLKKSFLD 621 (1129)
Q Consensus 613 ~YL~~~~l~ 621 (1129)
.||+.++.+
T Consensus 122 ~Yl~~t~~~ 130 (137)
T PF05188_consen 122 KYLEETQKS 130 (137)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHCcc
Confidence 999988765
No 28
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=99.30 E-value=2.8e-11 Score=112.87 Aligned_cols=92 Identities=41% Similarity=0.554 Sum_probs=86.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEeCCceEEEEccccccCCCCCcEEEeeeecceEEEeChhHH
Q 001187 837 GVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIK 916 (1129)
Q Consensus 837 g~d~~lD~~~~~l~~l~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~ 916 (1129)
|+|++||.+++.+.+++++|+++++++++.++.+.++|..+++.+|+|+||....+++|.+|+..+++++..||+||++.
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk~~~~~~~gy~i~v~~~~~~~~p~~~~~~~~~k~~~rf~t~~l~ 80 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKKLGIPSLKLVYIPKRGYLIEVPKSDEKKLPKDFIIVSSTKSGVRFTTPELK 80 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBEEEEETTTEEEEEEETCCGGGSTTTEEEEEEESSEEEEECHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEcCceEEEEEEEccccccCCCceEEEEEEcCcEEEECHHHH
Confidence 78999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001187 917 KLLGELSQAESE 928 (1129)
Q Consensus 917 ~l~~el~~~~~~ 928 (1129)
+|+.++.+++++
T Consensus 81 ~L~~~~~~~~ee 92 (92)
T PF05190_consen 81 ELNEELKEAEEE 92 (92)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999988764
No 29
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=99.12 E-value=9.3e-11 Score=95.93 Aligned_cols=48 Identities=33% Similarity=0.686 Sum_probs=38.6
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhccCcceE
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKI 154 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l~~e~~ 154 (1129)
-.|.+|++|||+++.||+|+|++||..++.|.|.|+||++ ++|...+|
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGte--l~lke~di 54 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTE--LELKENDI 54 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-E--EEEECCCE
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCE--EEeccccc
Confidence 3799999999999999999999999999999999999998 55555544
No 30
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.67 E-value=2.2e-08 Score=109.51 Aligned_cols=109 Identities=27% Similarity=0.351 Sum_probs=71.2
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------HHh----------HcCCeecCCC---cccch----
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------ILA----------QVGADVPAEI---FEISP---- 1069 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------ilA----------QiG~~VPA~~---a~l~~---- 1069 (1129)
+-.||++.. ..+.++.|+||||||||||+|.+.-++ +.. .|| |||... ..+|+
T Consensus 19 vl~~i~l~v-~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~Ig-YVPQ~~~~d~~fP~tV~d 96 (254)
T COG1121 19 VLEDISLSV-EKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIG-YVPQKSSVDRSFPITVKD 96 (254)
T ss_pred eeeccEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEE-EcCcccccCCCCCcCHHH
Confidence 555677765 457899999999999999999998644 111 144 888743 11211
Q ss_pred -----------------------hhhhhhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHHHH
Q 001187 1070 -----------------------VDRIFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1070 -----------------------~d~i~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~DG~ 1125 (1129)
++..+.++|..+-...-.+..+....+-..|.+ -++++.|+||||+.-|-+..-=.
T Consensus 97 ~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~ 176 (254)
T COG1121 97 VVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK 176 (254)
T ss_pred HHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHH
Confidence 234455555555444445555555444444333 48999999999999998875433
No 31
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.61 E-value=6e-08 Score=110.04 Aligned_cols=109 Identities=21% Similarity=0.315 Sum_probs=77.6
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc---cc--
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EI-- 1067 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a---~l-- 1067 (1129)
..+-||++|.. ..+.+++|.||||+||||+||+++-++ +..++| |||.... .+
T Consensus 18 ~~~l~~vs~~i-~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-y~~~~~~~~~~lT~ 95 (293)
T COG1131 18 KTALDGVSFEV-EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG-YVPQEPSLYPELTV 95 (293)
T ss_pred CEEEeceeEEE-cCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE-EEccCCCCCccccH
Confidence 46888899987 467899999999999999999998665 344566 5665431 11
Q ss_pred -------------------chhhhhhhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHH
Q 001187 1068 -------------------SPVDRIFVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1068 -------------------~~~d~i~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~D 1123 (1129)
..+++++.++|..+....-.++|+..|++-..| +.-+..++|+||||+-.|-++.-
T Consensus 96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~ 171 (293)
T COG1131 96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171 (293)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHH
Confidence 124456667777653322357787777764444 34578889999999999998764
No 32
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.55 E-value=1e-07 Score=104.85 Aligned_cols=108 Identities=21% Similarity=0.244 Sum_probs=72.0
Q ss_pred CcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCC---cccc
Q 001187 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEI---FEIS 1068 (1129)
Q Consensus 1012 ~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~---a~l~ 1068 (1129)
+..|-+|++|.. ..+.++.|.||||+|||||||+++-+. -+|+.=+|||.+. ..++
T Consensus 14 ~~~il~~ls~~i-~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~t 92 (258)
T COG1120 14 GKPILDDLSFSI-PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLT 92 (258)
T ss_pred CeeEEecceEEe-cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcE
Confidence 357778888887 468899999999999999999998754 3577777999863 1222
Q ss_pred hhh-------------------------hhhhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 001187 1069 PVD-------------------------RIFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1069 ~~d-------------------------~i~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTs 1120 (1129)
++| ..+..+|..+-......+.+..-++...|.+ -|.+..++||||+-..-+
T Consensus 93 V~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LD 170 (258)
T COG1120 93 VYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLD 170 (258)
T ss_pred EeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccC
Confidence 222 2244444444334444455444444444433 478899999999865443
No 33
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.46 E-value=1.1e-07 Score=102.16 Aligned_cols=105 Identities=26% Similarity=0.361 Sum_probs=74.4
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCC-----------------cccch-----h
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-----------------FEISP-----V 1070 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~-----------------a~l~~-----~ 1070 (1129)
--.-||++|.. ..+.++.|.||||+||||++..|. |.|-|... +++++ .
T Consensus 17 l~Al~~Vsl~v-~~Gei~~LIGPNGAGKTTlfNlit--------G~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~ 87 (250)
T COG0411 17 LTAVNDVSLEV-RPGEIVGLIGPNGAGKTTLFNLIT--------GFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQI 87 (250)
T ss_pred EEEEeceeEEE-cCCeEEEEECCCCCCceeeeeeec--------ccccCCCceEEECCcccCCCCHHHHHhccceeeccc
Confidence 45789999987 568899999999999999999998 88777643 22222 2
Q ss_pred hhhhhccCccchHhhcccc------------h---HHHH-------------------------------HHHHHHHHhC
Q 001187 1071 DRIFVRMGAKDHIMAGQST------------F---LTEL-------------------------------SETALMLSSA 1104 (1129)
Q Consensus 1071 d~i~trig~~d~i~~g~St------------F---~~em-------------------------------~e~~~il~~a 1104 (1129)
-++|..|..-||++-+... + ..|. .|+|..| |
T Consensus 88 ~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArAL--a 165 (250)
T COG0411 88 TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARAL--A 165 (250)
T ss_pred ccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHH--h
Confidence 3567777777777665220 1 1111 2244444 7
Q ss_pred CCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1105 TRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1105 t~~sLvllDElGRGTst~DG~AIA 1128 (1129)
+++.|+||||+..|-++.+--.|+
T Consensus 166 ~~P~lLLLDEPaAGln~~e~~~l~ 189 (250)
T COG0411 166 TQPKLLLLDEPAAGLNPEETEELA 189 (250)
T ss_pred cCCCEEEecCccCCCCHHHHHHHH
Confidence 999999999999999998765543
No 34
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.42 E-value=4.6e-07 Score=95.49 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=66.1
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCC------------------cccchhhhhhhc
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI------------------FEISPVDRIFVR 1076 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~------------------a~l~~~d~i~tr 1076 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++ |..-|.+. ..++++..++.+
T Consensus 14 ~l~~~~~~i-~~G~~~~l~G~nGsGKStLl~~i~--------G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~ 84 (180)
T cd03214 14 VLDDLSLSI-EAGEIVGILGPNGAGKSTLLKTLA--------GLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALEL 84 (180)
T ss_pred eEeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHh--------CCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHH
Confidence 344555554 347899999999999999999998 44333221 123333335566
Q ss_pred cCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1077 MGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1077 ig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
+|..+.+.....+++..+++ ++.+..-+.++.++||||+-.|-+...-
T Consensus 85 ~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 85 LGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred cCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 67666555544555544444 4444445789999999999999986543
No 35
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.34 E-value=7.5e-07 Score=101.75 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=67.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc---ccchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a---~l~~~ 1070 (1129)
.+-+|++|.. ..+.+++|.||||+|||||||+++.+. +..++| |||.+.. .+++.
T Consensus 7 ~~l~~vs~~i-~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 7 KAVDGVNFKV-REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG-IVPQYASVDEDLTGR 84 (302)
T ss_pred eEEeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcE-EecCCCCCCCCCcHH
Confidence 3556677765 457899999999999999999997543 123344 5665431 12222
Q ss_pred hh---------------------hhhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DR---------------------IFVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~---------------------i~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~D 1123 (1129)
+. ++.++|..+......++++..|++...+ ..-+.++.++||||+-.|-++.-
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 159 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 22 2333343332333345565555553333 33478899999999999988764
No 36
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.33 E-value=9.3e-07 Score=94.45 Aligned_cols=99 Identities=28% Similarity=0.412 Sum_probs=64.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcC-CeecCCCcccchhhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVG-ADVPAEIFEISPVDR 1072 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG-~~VPA~~a~l~~~d~ 1072 (1129)
-+-.+++|.. ..+.++.|.||||+||||+||+|+-++ -.|..| +|||. -.+
T Consensus 17 ~~L~gvsl~v-~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPe-------gR~ 88 (237)
T COG0410 17 QALRGVSLEV-ERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPE-------GRR 88 (237)
T ss_pred eEEeeeeeEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcc-------ccc
Confidence 4566777776 467899999999999999999998554 123334 34443 234
Q ss_pred hhhccCccchHhhccc-------------------------------chH---HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 001187 1073 IFVRMGAKDHIMAGQS-------------------------------TFL---TELSETALMLSSATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1073 i~trig~~d~i~~g~S-------------------------------tF~---~em~e~~~il~~at~~sLvllDElGRG 1118 (1129)
||.+|...+|+.-|.. |.+ ..|..++.+| .+.+.|+||||+.-|
T Consensus 89 iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL--m~~PklLLLDEPs~G 166 (237)
T COG0410 89 IFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL--MSRPKLLLLDEPSEG 166 (237)
T ss_pred chhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH--hcCCCEEEecCCccC
Confidence 5555555555544321 222 2333344444 578899999999999
Q ss_pred CChH
Q 001187 1119 TSTS 1122 (1129)
Q Consensus 1119 Tst~ 1122 (1129)
.+|.
T Consensus 167 LaP~ 170 (237)
T COG0410 167 LAPK 170 (237)
T ss_pred cCHH
Confidence 8874
No 37
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.31 E-value=7.3e-07 Score=95.38 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=71.2
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-----------------HHhHcCCeecCCC---cccchhhh
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-----------------ILAQVGADVPAEI---FEISPVDR 1072 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-----------------ilAQiG~~VPA~~---a~l~~~d~ 1072 (1129)
.-+-||++|.. ..++++.+.||||+||||++|+|.-+. +-.-|| |.|-+. -.+.+.|.
T Consensus 15 k~av~~isf~v-~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG-yLPEERGLy~k~tv~dq 92 (300)
T COG4152 15 KKAVDNISFEV-PPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG-YLPEERGLYPKMTVEDQ 92 (300)
T ss_pred eeeecceeeee-cCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc-cChhhhccCccCcHHHH
Confidence 45778999987 568999999999999999999997543 223455 677664 34555555
Q ss_pred h--hhcc-------------------CccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1073 I--FVRM-------------------GAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1073 i--~tri-------------------g~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+ |.++ +..+....-.-+.+..+++ +..|..-..++.||||||+..|-++..
T Consensus 93 l~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN 165 (300)
T COG4152 93 LKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVN 165 (300)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhh
Confidence 3 3332 1111111111223333333 555555668999999999999998854
No 38
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.30 E-value=1e-06 Score=100.87 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=68.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc---ccchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a---~l~~~ 1070 (1129)
.+-+|++|.. ..+.+++|.||||+||||+||+++-+. +..++| |||.+.. .+++.
T Consensus 21 ~~l~~vsl~i-~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig-~v~q~~~~~~~~tv~ 98 (306)
T PRK13537 21 LVVDGLSFHV-QRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG-VVPQFDNLDPDFTVR 98 (306)
T ss_pred EEEecceEEE-eCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE-EEeccCcCCCCCcHH
Confidence 5778888876 457899999999999999999998653 123455 6776532 23343
Q ss_pred hhhh--h-------------------ccCccchHhhcccchHHHHHHHH-HHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DRIF--V-------------------RMGAKDHIMAGQSTFLTELSETA-LMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~i~--t-------------------rig~~d~i~~g~StF~~em~e~~-~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+. . ++|..+......++++..|++-. .+..-+.++.|+||||+-.|-++.-
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~ 173 (306)
T PRK13537 99 ENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA 173 (306)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHH
Confidence 4331 1 22222211222345555555533 3333478899999999999998764
No 39
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.30 E-value=1.2e-06 Score=90.87 Aligned_cols=99 Identities=21% Similarity=0.220 Sum_probs=57.1
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcc---cchH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQ---STFL 1091 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~---StF~ 1091 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++ |..-|.. ..+.+-+.-.......+...... ..++
T Consensus 15 vl~~i~~~i-~~Ge~~~l~G~nGsGKSTLl~~i~--------G~~~~~~-G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS 84 (163)
T cd03216 15 ALDGVSLSV-RRGEVHALLGENGAGKSTLMKILS--------GLYKPDS-GEILVDGKEVSFASPRDARRAGIAMVYQLS 84 (163)
T ss_pred EEeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHh--------CCCCCCC-eEEEECCEECCcCCHHHHHhcCeEEEEecC
Confidence 445556655 357899999999999999999998 6554433 22221111000000001011000 0032
Q ss_pred H-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1092 T-ELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1092 ~-em~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
. |.++++.+..-+.+++++||||+..|.+...
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~ 117 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAALTPAE 117 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 2 3444444444578899999999999988654
No 40
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.29 E-value=9.9e-07 Score=102.23 Aligned_cols=108 Identities=21% Similarity=0.206 Sum_probs=69.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc---ccchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a---~l~~~ 1070 (1129)
.+-+|++|.. ..+.+++|.||||+||||+||+++.+. +..++| |||.+.. .+++.
T Consensus 55 ~~l~~is~~i-~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-~v~q~~~~~~~~tv~ 132 (340)
T PRK13536 55 AVVNGLSFTV-ASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG-VVPQFDNLDLEFTVR 132 (340)
T ss_pred EEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE-EEeCCccCCCCCcHH
Confidence 4778888876 467899999999999999999998653 112334 5665431 23344
Q ss_pred hhh---------------------hhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DRI---------------------FVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~i---------------------~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~D 1123 (1129)
+.+ +.++|..+.......+|+..|++-..|.+ -+..+.++||||+-.|-++.-
T Consensus 133 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~ 207 (340)
T PRK13536 133 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207 (340)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 433 22222222222223456666665444433 478899999999999998764
No 41
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.27 E-value=1.2e-06 Score=91.43 Aligned_cols=104 Identities=23% Similarity=0.345 Sum_probs=63.4
Q ss_pred ccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCe-e--------cCC-Ccccchh---hhhhhccCccch
Q 001187 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD-V--------PAE-IFEISPV---DRIFVRMGAKDH 1082 (1129)
Q Consensus 1016 pNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~-V--------PA~-~a~l~~~---d~i~trig~~d~ 1082 (1129)
-.|++|.. +.+++..|.||||+||||+||+||-+.+-.| |+- + |.. .-.+++. -.+|.||.+.+|
T Consensus 18 vrdVSF~a-e~Gei~GlLG~NGAGKTT~LRmiatlL~P~~-G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEn 95 (245)
T COG4555 18 VRDVSFEA-EEGEITGLLGENGAGKTTLLRMIATLLIPDS-GKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAREN 95 (245)
T ss_pred hhheeEEe-ccceEEEEEcCCCCCchhHHHHHHHhccCCC-ceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHH
Confidence 45788876 5689999999999999999999997664433 211 0 100 0112221 235556555555
Q ss_pred Hhh-------------------------------cccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 001187 1083 IMA-------------------------------GQSTFLTELSETALMLS-SATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1083 i~~-------------------------------g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst 1121 (1129)
|.- -.--|+..|++-..|.+ -...++++|+||+..|-+-
T Consensus 96 l~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi 166 (245)
T COG4555 96 LKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDI 166 (245)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccH
Confidence 431 12234444544333333 2578999999999999764
No 42
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.26 E-value=1.6e-06 Score=90.79 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=57.1
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCC-----------------cccchh---hhhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-----------------FEISPV---DRIF 1074 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~-----------------a~l~~~---d~i~ 1074 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++ |..-|.+. ..++++ ..+|
T Consensus 15 ~l~~~~~~i-~~Ge~~~i~G~nGsGKStLl~~l~--------G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (173)
T cd03230 15 ALDDISLTV-EKGEIYGLLGPNGAGKTTLIKIIL--------GLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLY 85 (173)
T ss_pred eeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHh--------CCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccc
Confidence 445566654 357899999999999999999998 43322211 001110 0112
Q ss_pred hccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1075 VRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1075 trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
..+...+++. .|.- |.++++.+..-+.++.++||||+-.|-+...-
T Consensus 86 ~~~tv~~~~~--LS~G--~~qrv~laral~~~p~illlDEPt~~LD~~~~ 131 (173)
T cd03230 86 ENLTVRENLK--LSGG--MKQRLALAQALLHDPELLILDEPTSGLDPESR 131 (173)
T ss_pred cCCcHHHHhh--cCHH--HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 2222233332 3333 33444444445789999999999999887543
No 43
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.26 E-value=1.6e-06 Score=91.58 Aligned_cols=98 Identities=18% Similarity=0.225 Sum_probs=59.1
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCC-------------------cccchh-h---
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-------------------FEISPV-D--- 1071 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~-------------------a~l~~~-d--- 1071 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++ |..-|.+. ..++++ .
T Consensus 15 ~l~~vs~~i-~~G~~~~i~G~nGsGKSTLl~~l~--------G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 85 (182)
T cd03215 15 AVRDVSFEV-RAGEIVGIAGLVGNGQTELAEALF--------GLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRK 85 (182)
T ss_pred eecceEEEE-cCCcEEEEECCCCCCHHHHHHHHh--------CCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcc
Confidence 566677665 357899999999999999999998 33322211 011111 0
Q ss_pred --hhhhccCccchHhhc--ccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1072 --RIFVRMGAKDHIMAG--QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 --~i~trig~~d~i~~g--~StF~~em~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.++..+...|++..+ .|.- |.++++.+..-+.++.++||||+..|-+...
T Consensus 86 ~~~~~~~~t~~e~l~~~~~LS~G--~~qrl~la~al~~~p~llllDEP~~~LD~~~ 139 (182)
T cd03215 86 REGLVLDLSVAENIALSSLLSGG--NQQKVVLARWLARDPRVLILDEPTRGVDVGA 139 (182)
T ss_pred cCcccCCCcHHHHHHHHhhcCHH--HHHHHHHHHHHccCCCEEEECCCCcCCCHHH
Confidence 122223334444322 2332 2333444444578899999999999988764
No 44
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.25 E-value=7.4e-07 Score=93.61 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=61.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCC-----eecCCCc-ccchh--hhhhhccCccc-hHh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA-----DVPAEIF-EISPV--DRIFVRMGAKD-HIM 1084 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~-----~VPA~~a-~l~~~--d~i~trig~~d-~i~ 1084 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.+.. .-|- ..+.... .+..+ .....++|..+ .+.
T Consensus 9 ~~l~~isl~i-~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~ 82 (176)
T cd03238 9 HNLQNLDVSI-PLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLG 82 (176)
T ss_pred eeecceEEEE-cCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccC
Confidence 4556677766 4578999999999999999997631 1121 1111100 11111 23455666543 234
Q ss_pred hcccchHHHHHHHHHHHH-hCCC--CcEEEEeCCCCCCChHHH
Q 001187 1085 AGQSTFLTELSETALMLS-SATR--NSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1085 ~g~StF~~em~e~~~il~-~at~--~sLvllDElGRGTst~DG 1124 (1129)
...++++..+++...+.+ .+.+ ++++||||+..|.+...-
T Consensus 83 ~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~ 125 (176)
T cd03238 83 QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDI 125 (176)
T ss_pred CCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHH
Confidence 444555544444333333 3566 899999999999887643
No 45
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.24 E-value=1.7e-06 Score=88.01 Aligned_cols=88 Identities=26% Similarity=0.188 Sum_probs=53.9
Q ss_pred ccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHH
Q 001187 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSET 1097 (1129)
Q Consensus 1018 di~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~ 1097 (1129)
++++.. ..+.+++|+||||+|||||++.++ |..-|. +.++.+-.+ .+++--.. .|.-+ .+++
T Consensus 18 ~~~~~~-~~Ge~~~i~G~nGsGKStLl~~l~--------G~~~~~-~G~i~~~~~--~~i~~~~~----lS~G~--~~rv 79 (144)
T cd03221 18 DISLTI-NPGDRIGLVGRNGAGKSTLLKLIA--------GELEPD-EGIVTWGST--VKIGYFEQ----LSGGE--KMRL 79 (144)
T ss_pred eeEEEE-CCCCEEEEECCCCCCHHHHHHHHc--------CCCCCC-ceEEEECCe--EEEEEEcc----CCHHH--HHHH
Confidence 344443 246799999999999999999998 665443 333322111 01111000 33333 3444
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1098 ALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1098 ~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+..-+.+++++|+||+-.|-+...
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~ 105 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLES 105 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 44444477889999999999988654
No 46
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=2.3e-06 Score=89.35 Aligned_cols=94 Identities=21% Similarity=0.236 Sum_probs=55.7
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCc------------------ccchh---hhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIF------------------EISPV---DRI 1073 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a------------------~l~~~---d~i 1073 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++. ..-|.+.. .++++ ..+
T Consensus 17 ~l~~i~~~i-~~G~~~~l~G~nGsGKstLl~~i~G--------~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 87 (171)
T cd03228 17 VLKDVSLTI-KPGEKVAIVGPSGSGKSTLLKLLLR--------LYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFL 87 (171)
T ss_pred cccceEEEE-cCCCEEEEECCCCCCHHHHHHHHHc--------CCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchh
Confidence 444555554 3578999999999999999999984 33222110 01100 011
Q ss_pred hhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1074 FVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1074 ~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
|. ....|++ .|. .|.++++.+..-+.+++++||||+..|.+...
T Consensus 88 ~~-~t~~e~l---LS~--G~~~rl~la~al~~~p~llllDEP~~gLD~~~ 131 (171)
T cd03228 88 FS-GTIRENI---LSG--GQRQRIAIARALLRDPPILILDEATSALDPET 131 (171)
T ss_pred cc-chHHHHh---hCH--HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 11 1122332 332 23444444444578899999999999998754
No 47
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.22 E-value=2.3e-06 Score=90.93 Aligned_cols=110 Identities=19% Similarity=0.128 Sum_probs=65.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH----------------------HhHcCCeecCCCc----cc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------------LAQVGADVPAEIF----EI 1067 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi----------------------lAQiG~~VPA~~a----~l 1067 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+.- +.+.-.|||.... ..
T Consensus 6 ~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 6 EVLKGLNFAA-ERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred ceecceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 3556677765 3578999999999999999999875420 0111135665421 11
Q ss_pred chhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1068 SPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1068 ~~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
++.+.+ +.++|..+.+....++++..+++ ++.+..-+.++.++||||+..|-+...-
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 222322 22233332222233444444444 4433445788899999999999987643
No 48
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.21 E-value=2.4e-06 Score=92.75 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=64.1
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------HhHcCCeecCCCc---ccchhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF---EISPVD 1071 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lAQiG~~VPA~~a---~l~~~d 1071 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+.- ..++| |||.... .+++.+
T Consensus 17 il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 17 AVDDLSLNV-YKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLG-YCPQFDALFDELTVRE 94 (220)
T ss_pred eecceEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEE-EecCcCCccccCCHHH
Confidence 445566655 3578999999999999999999985530 11222 5554421 122222
Q ss_pred h---------------------hhhccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1072 R---------------------IFVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1072 ~---------------------i~trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
. ++.++|..+.+....++++..+ ++++.+..-+.++.++||||+-.|-++.--
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 169 (220)
T cd03263 95 HLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR 169 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHH
Confidence 2 2223333322222233443333 444444456789999999999999887543
No 49
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.20 E-value=2e-06 Score=98.23 Aligned_cols=107 Identities=14% Similarity=0.226 Sum_probs=66.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc---ccchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a---~l~~~ 1070 (1129)
.+-+|++|.. ..+.+++|+||||+||||+||+++.+. +..++| |||.... .+++.
T Consensus 16 ~~l~~is~~i-~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig-~~~q~~~l~~~~tv~ 93 (301)
T TIGR03522 16 NALDEVSFEA-QKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG-YLPEHNPLYLDMYVR 93 (301)
T ss_pred EEEEEeEEEE-eCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE-EecCCCCCCCCCcHH
Confidence 4667777776 457899999999999999999998653 122333 5665431 22333
Q ss_pred hhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChH
Q 001187 1071 DRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1071 d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~ 1122 (1129)
+.+ +.++|..+......+.++..|++ ++.+..-+.++.++||||+-.|-++.
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~ 167 (301)
T TIGR03522 94 EYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN 167 (301)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 332 22233332222233444444444 33333347889999999999998875
No 50
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.20 E-value=2.4e-06 Score=92.61 Aligned_cols=107 Identities=18% Similarity=0.249 Sum_probs=63.3
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H-----------Hh-HcCCeecCCCc---c
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I-----------LA-QVGADVPAEIF---E 1066 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i-----------lA-QiG~~VPA~~a---~ 1066 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++-+. + .. ++ .|||.... .
T Consensus 19 il~~~s~~i-~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~ 96 (218)
T cd03255 19 ALKGVSLSI-EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHI-GFVFQSFNLLPD 96 (218)
T ss_pred EEeeeEEEE-cCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcE-EEEeeccccCCC
Confidence 445666655 357899999999999999999997553 0 11 23 25554421 1
Q ss_pred cchhhh---------------------hhhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1067 ISPVDR---------------------IFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1067 l~~~d~---------------------i~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+++.+. ++.++|..+.+.....+++..+++ ++.+..-+.++.++||||+..|-++.-
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence 122222 223333332222223344444444 433344578899999999999988753
No 51
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.20 E-value=2.4e-06 Score=92.36 Aligned_cols=109 Identities=18% Similarity=0.208 Sum_probs=64.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------------HhHcCCeecCCCc---cc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------LAQVGADVPAEIF---EI 1067 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------------lAQiG~~VPA~~a---~l 1067 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- +.+.-.|||.+.. .+
T Consensus 16 ~il~~is~~i-~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (214)
T TIGR02673 16 AALHDVSLHI-RKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR 94 (214)
T ss_pred eeecceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC
Confidence 3556666665 3578999999999999999999986520 1111235655421 12
Q ss_pred chhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1068 SPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1068 ~~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
++.+.+ +.++|..+.+......++..+++ ++.+..-+.++.++||||+..|-+..-
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 172 (214)
T TIGR02673 95 TVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL 172 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHH
Confidence 333322 22223322222222344444444 444444578899999999999988753
No 52
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.19 E-value=2.5e-06 Score=97.56 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=66.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc---ccchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a---~l~~~ 1070 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. +..++| |||.... .+++.
T Consensus 18 ~~l~~vsl~i-~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~ 95 (303)
T TIGR01288 18 VVVNDLSFTI-ARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG-VVPQFDNLDPEFTVR 95 (303)
T ss_pred EEEcceeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE-EEeccccCCcCCcHH
Confidence 4566777766 457899999999999999999997543 112233 6665532 23344
Q ss_pred hhhh---------------------hccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DRIF---------------------VRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~i~---------------------trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+. .++|..+......++++..|++...| ..-+.++.++||||+..|-++.-
T Consensus 96 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 170 (303)
T TIGR01288 96 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170 (303)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 4331 12222222222234555555553333 33478899999999999988754
No 53
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=3e-06 Score=92.19 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=65.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------HhHcCCeecCCCc---ccchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF---EISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lAQiG~~VPA~~a---~l~~~ 1070 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- ..++ .|||.+.. .+++.
T Consensus 14 ~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~ 91 (220)
T cd03265 14 EAVRGVSFRV-RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI-GIVFQDLSVDDELTGW 91 (220)
T ss_pred EeeeceeEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcE-EEecCCccccccCcHH
Confidence 3556777766 3578999999999999999999986420 0112 25665432 12222
Q ss_pred hhh---------------------hhccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DRI---------------------FVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~i---------------------~trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+ +.++|..+.+....+.++..+ ++++.+..-+.++.|+||||+..|-+..-
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~ 166 (220)
T cd03265 92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT 166 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH
Confidence 322 222333322222223444333 33444445578999999999999988764
No 54
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=1.6e-06 Score=89.17 Aligned_cols=87 Identities=29% Similarity=0.336 Sum_probs=54.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhh---------hhhhccCccchHhhcccchHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVD---------RIFVRMGAKDHIMAGQSTFLTELSE 1096 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d---------~i~trig~~d~i~~g~StF~~em~e 1096 (1129)
.+.+++|+||||+||||||+.++ |...|. ..++.+-. ++...++--.. .|. .|.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~--------g~~~~~-~G~i~~~~~~~~~~~~~~~~~~i~~~~q----lS~--G~~~r 88 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIA--------GLLKPT-SGEILIDGKDIAKLPLEELRRRIGYVPQ----LSG--GQRQR 88 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh--------CCCCCC-ccEEEECCEEcccCCHHHHHhceEEEee----CCH--HHHHH
Confidence 46799999999999999999998 654443 22222211 11111111111 222 34455
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHhh
Q 001187 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1097 ~~~il~~at~~sLvllDElGRGTst~DG~AI 1127 (1129)
++.+..-+.+++++||||+..|.+...-..+
T Consensus 89 ~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l 119 (157)
T cd00267 89 VALARALLLNPDLLLLDEPTSGLDPASRERL 119 (157)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 5555555778899999999999997654443
No 55
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.17 E-value=4.3e-06 Score=90.20 Aligned_cols=107 Identities=18% Similarity=0.265 Sum_probs=62.1
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------HhHcCCeecCCCc---ccchhhhh-
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------LAQVGADVPAEIF---EISPVDRI- 1073 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------lAQiG~~VPA~~a---~l~~~d~i- 1073 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+.- ..++ .|||.... .+++.+.+
T Consensus 15 ~l~~v~~~i-~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i-~~~~q~~~~~~~~tv~e~l~ 92 (210)
T cd03269 15 ALDDISFSV-EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRI-GYLPEERGLYPKMKVIDQLV 92 (210)
T ss_pred EEeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccE-EEeccCCcCCcCCcHHHHHH
Confidence 455666655 3578999999999999999999985431 1112 25554421 12333332
Q ss_pred --------------------hhccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1074 --------------------FVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1074 --------------------~trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.++|..+.+......++..+ ++++.+..-+.++.++||||+..|-++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~ 163 (210)
T cd03269 93 YLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163 (210)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 222222211111122333333 33444444578889999999999998754
No 56
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.16 E-value=3.8e-06 Score=90.83 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=63.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------------HhHcCCeecCCCcc---cc
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------LAQVGADVPAEIFE---IS 1068 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------------lAQiG~~VPA~~a~---l~ 1068 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+.- ..+.-.|||.+..- ++
T Consensus 16 ~l~~~sl~i-~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (214)
T cd03292 16 ALDGINISI-SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN 94 (214)
T ss_pred eeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence 445666665 3578999999999999999999986520 11112356554311 22
Q ss_pred hhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1069 PVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1069 ~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+.+ +.++|..+.+.....+++..+++ ++.+..-+.++.++||||+..|-++..
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 171 (214)
T cd03292 95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 33322 22233322222222334333333 443444578899999999999988754
No 57
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.16 E-value=4e-06 Score=89.49 Aligned_cols=102 Identities=22% Similarity=0.292 Sum_probs=59.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-HhHcC------------------CeecCCCcccchhhhhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-LAQVG------------------ADVPAEIFEISPVDRIF 1074 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-lAQiG------------------~~VPA~~a~l~~~d~i~ 1074 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+.- -..-| .|+|.+. .+|
T Consensus 23 ~~l~~~~~~i-~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~-------~~~ 94 (194)
T cd03213 23 QLLKNVSGKA-KPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDD-------ILH 94 (194)
T ss_pred cceecceEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcc-------cCC
Confidence 4566677765 3578999999999999999999984320 00001 1222221 122
Q ss_pred hccCccchHhhccc--chHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1075 VRMGAKDHIMAGQS--TFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1075 trig~~d~i~~g~S--tF~~-em~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
..+...|++..+.. .++. +.++++.+..-+.++.++||||+..|-+...
T Consensus 95 ~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 146 (194)
T cd03213 95 PTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146 (194)
T ss_pred CCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH
Confidence 22233344332110 2322 3333444444468889999999999988754
No 58
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.16 E-value=3.5e-06 Score=90.88 Aligned_cols=109 Identities=22% Similarity=0.188 Sum_probs=66.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH---------------------HhHcCCeecCCCc----ccc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------LAQVGADVPAEIF----EIS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi---------------------lAQiG~~VPA~~a----~l~ 1068 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+.- ..++ .|||.... ..+
T Consensus 15 ~il~~vs~~i-~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~~~~~~~t 92 (211)
T cd03225 15 PALDDISLTI-KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKV-GLVFQNPDDQFFGPT 92 (211)
T ss_pred eeecceEEEE-cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhc-eEEecChhhhcCCCc
Confidence 3556666665 3578999999999999999999986530 1122 35665531 223
Q ss_pred hhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1069 PVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1069 ~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
+.+.+ +.++|..+.+....+.++..+++ ++.+..-+.++.|+||||+..|-++.--
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 170 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGR 170 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 33332 22233332222333455555544 3333345788899999999999887643
No 59
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.16 E-value=3.8e-06 Score=90.50 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=65.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H------HhHcCCeecCCCc---ccchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I------LAQVGADVPAEIF---EISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i------lAQiG~~VPA~~a---~l~~~d 1071 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+. + ..++| |||.+.. .+++.+
T Consensus 14 ~~l~~~~~~i-~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e 91 (208)
T cd03268 14 RVLDDISLHV-KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG-ALIEAPGFYPNLTARE 91 (208)
T ss_pred EeEeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEE-EecCCCccCccCcHHH
Confidence 3555666665 357899999999999999999998542 1 12333 6666532 233333
Q ss_pred hh-----------------hhccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1072 RI-----------------FVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 ~i-----------------~trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+ +.++|..+.+.....+++..+ ++++.+..-+.++.++||||+..|-+...
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 161 (208)
T cd03268 92 NLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161 (208)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHH
Confidence 33 222333222222223333333 33444444578899999999999988754
No 60
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.15 E-value=3.5e-06 Score=90.49 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=28.1
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 13 ~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 13 ILDDLNLTI-EKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEeceEEEE-eCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 445666655 35789999999999999999999854
No 61
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.15 E-value=2.5e-06 Score=91.69 Aligned_cols=107 Identities=19% Similarity=0.238 Sum_probs=63.5
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H-----HhHcCCeecCCC----cccchhhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I-----LAQVGADVPAEI----FEISPVDR 1072 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i-----lAQiG~~VPA~~----a~l~~~d~ 1072 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+. + -.++| |||.+. ...++.+.
T Consensus 15 ~l~~v~~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~-~~~q~~~~~~~~~tv~e~ 92 (205)
T cd03226 15 ILDDLSLDL-YAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG-YVMQDVDYQLFTDSVREE 92 (205)
T ss_pred eeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceE-EEecChhhhhhhccHHHH
Confidence 445566654 357899999999999999999998653 0 01233 566552 12233333
Q ss_pred h-----------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1073 I-----------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1073 i-----------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+ +.++|..+.+.....+++..+++ ++.+..-+.++.++||||+..|-++..
T Consensus 93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 161 (205)
T cd03226 93 LLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKN 161 (205)
T ss_pred HhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH
Confidence 3 22333322222222344444444 333333467889999999999998754
No 62
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.15 E-value=6.2e-06 Score=83.70 Aligned_cols=111 Identities=25% Similarity=0.266 Sum_probs=71.5
Q ss_pred CcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------------HHhHcCCeecCC-
Q 001187 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------------ILAQVGADVPAE- 1063 (1129)
Q Consensus 1012 ~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------------ilAQiG~~VPA~- 1063 (1129)
+.-|-|.++|.. ..+.+++||||.|+|||||||++|.+. +++|--...|..
T Consensus 15 ~a~il~~isl~v-~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 15 DAKILNNISLSV-RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCeeecceeeee-cCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 456788888876 467899999999999999999999875 334432222211
Q ss_pred --Ccccch-----------hhhhhhccCccchHhhcccch-H-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1064 --IFEISP-----------VDRIFVRMGAKDHIMAGQSTF-L-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1064 --~a~l~~-----------~d~i~trig~~d~i~~g~StF-~-~em~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
...++. +-..+.|++..+.+....-|= + .|-++++.|-+...-+.++||||+-..-+...
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~n 168 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhh
Confidence 111221 122566777776665443222 2 35555666655667888999999876655443
No 63
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.14 E-value=3.4e-06 Score=88.72 Aligned_cols=97 Identities=23% Similarity=0.206 Sum_probs=57.7
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcC--------------------CeecCCCcccchhhhhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------------------ADVPAEIFEISPVDRIF 1074 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG--------------------~~VPA~~a~l~~~d~i~ 1074 (1129)
+-.|+++.. ..+.+++|+||||+|||||||.++.+.- ..-| .|||... .+|
T Consensus 17 ~l~~i~~~i-~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~-------~~~ 87 (178)
T cd03247 17 VLKNLSLEL-KQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGVPVSDLEKALSSLISVLNQRP-------YLF 87 (178)
T ss_pred ceEEEEEEE-cCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCEEHHHHHHHHHhhEEEEccCC-------eee
Confidence 444556655 3578999999999999999999984320 1111 1112110 011
Q ss_pred hccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1075 VRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1075 trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.....+++....|. .|.++++.+..-+.++.++||||+-.|-++..
T Consensus 88 -~~tv~~~i~~~LS~--G~~qrv~laral~~~p~~lllDEP~~~LD~~~ 133 (178)
T cd03247 88 -DTTLRNNLGRRFSG--GERQRLALARILLQDAPIVLLDEPTVGLDPIT 133 (178)
T ss_pred -cccHHHhhcccCCH--HHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 11223444333333 34444444444578999999999999988754
No 64
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.14 E-value=3.9e-06 Score=90.72 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=62.9
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------------------HhHcCCeecCCCc---ccchhhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIF---EISPVDR 1072 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------------------lAQiG~~VPA~~a---~l~~~d~ 1072 (1129)
+-+|++|.. ..+.+++|+||||+|||||||.++.+.- -.++ .|||.+.. .+++.+.
T Consensus 15 il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i-~~v~q~~~~~~~~tv~~~ 92 (213)
T cd03259 15 ALDDLSLTV-EPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNI-GMVFQDYALFPHLTVAEN 92 (213)
T ss_pred eecceeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccE-EEEcCchhhccCCcHHHH
Confidence 455666665 3578999999999999999999985431 0112 25555421 1233333
Q ss_pred h---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1073 I---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1073 i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+ +.++|..+.+....+.++..+++ ++.+..-+.++.++||||+..|-++..
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~ 165 (213)
T cd03259 93 IAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165 (213)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 2 22233222222222344444444 333333578899999999999988754
No 65
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.14 E-value=4.2e-06 Score=91.48 Aligned_cols=110 Identities=17% Similarity=0.137 Sum_probs=65.6
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------------H-hHcCCeecCCCc---cc
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------L-AQVGADVPAEIF---EI 1067 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------------l-AQiG~~VPA~~a---~l 1067 (1129)
+-+|++|.. ..+.+++|+||||+|||||||.++.+.- + .+--.|||.+.. .+
T Consensus 25 ~l~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 25 ILTGVELVV-KRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEeccEEEE-cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 556666665 3578999999999999999999986530 0 111135665432 12
Q ss_pred chhhhhh---------------------hccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1068 SPVDRIF---------------------VRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1068 ~~~d~i~---------------------trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
++.|.+. .++|..+.+......++..+ ++++.+..-+.++.++||||+..|-+...-.
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 183 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 3444432 22222222222223343333 3344444457889999999999999876443
No 66
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.14 E-value=4.6e-06 Score=86.83 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=59.6
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcC----------CeecCCCcccchhhhhhhccCccchHh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------ADVPAEIFEISPVDRIFVRMGAKDHIM 1084 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG----------~~VPA~~a~l~~~d~i~trig~~d~i~ 1084 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++...- .+-| .|||.+.. ++ .+...|++.
T Consensus 16 ~l~~i~l~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~i~~~~q~~~-------~~-~~tv~~nl~ 85 (166)
T cd03223 16 LLKDLSFEI-KPGDRLLITGPSGTGKSSLFRALAGLWP-WGSGRIGMPEGEDLLFLPQRPY-------LP-LGTLREQLI 85 (166)
T ss_pred eeecCeEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCCceEEEECCCCc-------cc-cccHHHHhh
Confidence 445566655 3578999999999999999999984321 1112 13333321 11 123334443
Q ss_pred h-cccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1085 A-GQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1085 ~-g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
. ....+...+ ++++.+..-+.++.++||||+-.|-+...-.
T Consensus 86 ~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~ 128 (166)
T cd03223 86 YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESED 128 (166)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHH
Confidence 2 122333333 3333333346889999999999998875443
No 67
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.14 E-value=3.5e-06 Score=91.61 Aligned_cols=109 Identities=21% Similarity=0.181 Sum_probs=64.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH----------------hHcCCeecCCCc---ccchhhhh-
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------------AQVGADVPAEIF---EISPVDRI- 1073 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil----------------AQiG~~VPA~~a---~l~~~d~i- 1073 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+.-- .++ .|||.... .+++.+.+
T Consensus 18 ~il~~vs~~i-~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i-~~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 18 TALEDISLSV-EEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDR-GYVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred EEEeceeEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcE-EEEecccccccCCCHHHHHH
Confidence 3455666665 35789999999999999999999865310 112 25554421 12333332
Q ss_pred --------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1074 --------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1074 --------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
+.++|..+.+..-.+.++..+++ ++.+..-+.+++++||||+..|-++.--
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 167 (220)
T cd03293 96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR 167 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHH
Confidence 22223222222223445444444 3334445778899999999999887643
No 68
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.14 E-value=5.3e-06 Score=90.20 Aligned_cols=108 Identities=18% Similarity=0.223 Sum_probs=64.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCccc--chh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIFEI--SPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a~l--~~~ 1070 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+. +-.++| |+|.+..-+ ++.
T Consensus 18 ~~l~~i~~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~l~~~tv~ 95 (221)
T cd03244 18 PVLKNISFSI-KPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS-IIPQDPVLFSGTIR 95 (221)
T ss_pred ccccceEEEE-CCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE-EECCCCccccchHH
Confidence 4667777776 457899999999999999999998542 011222 555543211 122
Q ss_pred hh--------------hhhccCccchHh-----------hcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DR--------------IFVRMGAKDHIM-----------AGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~--------------i~trig~~d~i~-----------~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+. ++.++|..+.+. ...+.+...+ +.++.+..-+.+++++||||+-.|.+...
T Consensus 96 enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~ 174 (221)
T cd03244 96 SNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174 (221)
T ss_pred HHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 22 222333333221 1223343333 33444444578899999999999988754
No 69
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.13 E-value=4.1e-06 Score=92.43 Aligned_cols=108 Identities=20% Similarity=0.268 Sum_probs=64.4
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H----------HhHcCCeecCCCc---ccc
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I----------LAQVGADVPAEIF---EIS 1068 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i----------lAQiG~~VPA~~a---~l~ 1068 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+. + +.+--.|||.+.. .++
T Consensus 17 il~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (243)
T TIGR02315 17 ALKNINLNI-NPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT 95 (243)
T ss_pred eeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence 455666665 357899999999999999999997543 0 1111236665532 233
Q ss_pred hhhhhh-----------------------------hccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCC
Q 001187 1069 PVDRIF-----------------------------VRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1069 ~~d~i~-----------------------------trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRG 1118 (1129)
+.+.+. .++|..+.+.....+++..+++ ++.+..-+.++.++||||+..|
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 175 (243)
T TIGR02315 96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175 (243)
T ss_pred HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 334332 2222222222223445444444 4444445788999999999999
Q ss_pred CChHH
Q 001187 1119 TSTSD 1123 (1129)
Q Consensus 1119 Tst~D 1123 (1129)
-+..-
T Consensus 176 LD~~~ 180 (243)
T TIGR02315 176 LDPKT 180 (243)
T ss_pred CCHHH
Confidence 88653
No 70
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=4.3e-06 Score=91.90 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=64.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------------H-hHcCCeecCCCc---cc
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------L-AQVGADVPAEIF---EI 1067 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------------l-AQiG~~VPA~~a---~l 1067 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+.- + .++ .|||.... .+
T Consensus 15 ~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i-~~v~q~~~~~~~~ 92 (235)
T cd03261 15 VLKGVDLDV-RRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM-GMLFQSGALFDSL 92 (235)
T ss_pred EEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce-EEEccCcccCCCC
Confidence 455666665 3578999999999999999999985430 0 112 25665431 12
Q ss_pred chhhhh----------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1068 SPVDRI----------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1068 ~~~d~i----------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
++.+.+ +.++|..+.+....++++..+++ ++.+..-+.++.++||||+..|-+..-
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 171 (235)
T cd03261 93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171 (235)
T ss_pred cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 333332 12222222222222345444444 444444578899999999999988753
No 71
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=5.4e-06 Score=90.91 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=65.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH------------------------HhHcCCeecCCCc---cc
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------------LAQVGADVPAEIF---EI 1067 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi------------------------lAQiG~~VPA~~a---~l 1067 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+.- -.++ .|||.... .+
T Consensus 20 il~~~s~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~ 97 (233)
T cd03258 20 ALKDVSLSV-PKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRI-GMIFQHFNLLSSR 97 (233)
T ss_pred eeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe-EEEccCcccCCCC
Confidence 445555654 3578999999999999999999975530 1123 36665532 23
Q ss_pred chhhhhh---------------------hccCccchHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1068 SPVDRIF---------------------VRMGAKDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1068 ~~~d~i~---------------------trig~~d~i~~g~StF~~em~-e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
++.+.+. .++|..+.+....++++..++ +++.+..-+.++.++||||+..|.+..-
T Consensus 98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPET 175 (233)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHH
Confidence 3444332 222322222223344554444 4444444578899999999999998753
No 72
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.13 E-value=5.6e-06 Score=92.07 Aligned_cols=108 Identities=27% Similarity=0.319 Sum_probs=65.2
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcC----------CeecCCCcc---c--chhh--------
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------ADVPAEIFE---I--SPVD-------- 1071 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG----------~~VPA~~a~---l--~~~d-------- 1071 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+.- ..-| .|||.+... + .+.+
T Consensus 19 vl~~vs~~i-~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~ 96 (251)
T PRK09544 19 VLSDVSLEL-KPGKILTLLGPNGAGKSTLVRVVLGLVA-PDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGT 96 (251)
T ss_pred EEEeEEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCccCEEEeccccccccccChhHHHHHhccccc
Confidence 555666665 3578999999999999999999985431 1111 255554211 1 1111
Q ss_pred ------hhhhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1072 ------RIFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1072 ------~i~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
.++.++|..+.+.....+++..+++ ++.+..-+.++.++||||+-.|.+...-
T Consensus 97 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 156 (251)
T PRK09544 97 KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156 (251)
T ss_pred cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 1223444444333344455544444 4444445788999999999999987643
No 73
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=3.5e-06 Score=88.66 Aligned_cols=96 Identities=26% Similarity=0.346 Sum_probs=56.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccch-------h-----------------
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISP-------V----------------- 1070 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~-------~----------------- 1070 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++ |.+-|.+ .++.+ .
T Consensus 15 ~l~~i~~~i-~~G~~~~i~G~nGsGKSTLl~~l~--------G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 84 (178)
T cd03229 15 VLNDVSLNI-EAGEIVALLGPSGSGKSTLLRCIA--------GLEEPDS-GSILIDGEDLTDLEDELPPLRRRIGMVFQD 84 (178)
T ss_pred EEeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHh--------CCCCCCc-eEEEECCEEccccchhHHHHhhcEEEEecC
Confidence 444555554 346899999999999999999998 4432221 11100 0
Q ss_pred hhhhhccCccchHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~i~trig~~d~i~~g~StF~-~em~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
..+|..+...+++... ++ .|.++++.+..-+..+.++||||+-.|-++.-
T Consensus 85 ~~~~~~~t~~~~l~~~---lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~ 135 (178)
T cd03229 85 FALFPHLTVLENIALG---LSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT 135 (178)
T ss_pred CccCCCCCHHHheeec---CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 0011111112222111 32 34444555555578899999999999988753
No 74
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.12 E-value=5.6e-06 Score=88.75 Aligned_cols=107 Identities=17% Similarity=0.097 Sum_probs=64.6
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCC---cccchhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEI---FEISPVD 1071 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~---a~l~~~d 1071 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+. +..++| |||.+. ..+++.+
T Consensus 16 il~~~s~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~~ 93 (200)
T PRK13540 16 LLQQISFHL-PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLC-FVGHRSGINPYLTLRE 93 (200)
T ss_pred EEeeeeEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheE-EeccccccCcCCCHHH
Confidence 455666665 357899999999999999999987553 123444 455432 1233444
Q ss_pred hhh----------------hccCccchHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1072 RIF----------------VRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 ~i~----------------trig~~d~i~~g~StF~-~em~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+. .+++..+........++ .|.++++.+..-+..+.++||||+-.|-+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~ 162 (200)
T PRK13540 94 NCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS 162 (200)
T ss_pred HHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 332 22222221111112333 34455555555678899999999999987653
No 75
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.12 E-value=5.6e-06 Score=91.79 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=29.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 17 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 17 TVLHGIDLEV-KPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred eeeccceEEE-cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3556777765 35789999999999999999998754
No 76
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.12 E-value=6.8e-06 Score=88.74 Aligned_cols=108 Identities=21% Similarity=0.255 Sum_probs=63.5
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H---------HhHcCCeecCCCc---ccch
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I---------LAQVGADVPAEIF---EISP 1069 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i---------lAQiG~~VPA~~a---~l~~ 1069 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+. + ..+.-.|||.+.. .+++
T Consensus 15 ~l~~~s~~i-~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (213)
T cd03262 15 VLKGIDLTV-KKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV 93 (213)
T ss_pred eecCceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcH
Confidence 445556654 357899999999999999999998653 0 1121235665432 1233
Q ss_pred hhhh----------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1070 VDRI----------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1070 ~d~i----------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+.+ +.++|....+.....++...+++ ++.+..-+.+++++||||+..|-+...
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 170 (213)
T cd03262 94 LENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPEL 170 (213)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 3332 22223222222222344444444 444444578899999999999988753
No 77
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.12 E-value=4.9e-06 Score=87.56 Aligned_cols=82 Identities=17% Similarity=0.069 Sum_probs=51.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCc-cchHhhcccchHHHHHHHHHHHHhC
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGA-KDHIMAGQSTFLTELSETALMLSSA 1104 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~-~d~i~~g~StF~~em~e~~~il~~a 1104 (1129)
.+.+++|.||||+|||||||.++ |..-|.+ .++.+-.. .++- .+.. ..|.-+.....++.+ -+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~--------Gl~~p~~-G~i~~~g~---~i~~~~q~~--~LSgGq~qrv~lara--l~ 87 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILA--------GQLIPNG-DNDEWDGI---TPVYKPQYI--DLSGGELQRVAIAAA--LL 87 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHH--------cCCCCCC-cEEEECCE---EEEEEcccC--CCCHHHHHHHHHHHH--Hh
Confidence 46799999999999999999999 6654543 22222111 0110 0111 034433333333333 46
Q ss_pred CCCcEEEEeCCCCCCChHH
Q 001187 1105 TRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1105 t~~sLvllDElGRGTst~D 1123 (1129)
.+++++||||+-.|.+...
T Consensus 88 ~~p~lllLDEPts~LD~~~ 106 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQ 106 (177)
T ss_pred cCCCEEEEECCcccCCHHH
Confidence 7889999999999988654
No 78
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.12 E-value=5.3e-06 Score=89.93 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=65.4
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H----------H-hHcCCeecCCCc---cc
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I----------L-AQVGADVPAEIF---EI 1067 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i----------l-AQiG~~VPA~~a---~l 1067 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+. + + .++ .|||.+.. .+
T Consensus 18 il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~ 95 (216)
T TIGR00960 18 ALDNLNFHI-TKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHI-GMVFQDHRLLSDR 95 (216)
T ss_pred EEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhc-eEEecCccccccc
Confidence 455666665 357899999999999999999997653 0 1 123 35665432 12
Q ss_pred chhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1068 SPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1068 ~~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
++.+.+ +.++|..+.+.....+++..+++ ++.+..-+.++.++||||+..|-++.--.
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 175 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR 175 (216)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 333332 22233322222222344444444 44444457889999999999999876443
No 79
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.11 E-value=2.2e-06 Score=91.34 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=59.7
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH-hHcC-----------------CeecCCCcccchhhhhhhc
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-AQVG-----------------ADVPAEIFEISPVDRIFVR 1076 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil-AQiG-----------------~~VPA~~a~l~~~d~i~tr 1076 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++..... +.-| .|||.. ..+|..
T Consensus 22 ~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~-------~~~~~~ 93 (192)
T cd03232 22 LLNNISGYV-KPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQ-------DVHSPN 93 (192)
T ss_pred eEEccEEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEeccc-------CccccC
Confidence 445666655 35789999999999999999999943210 1112 122221 122333
Q ss_pred cCccchHhhccc--chHHH-HHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1077 MGAKDHIMAGQS--TFLTE-LSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1077 ig~~d~i~~g~S--tF~~e-m~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+...+++..+.. .++.. .++++.+..-+.++.++||||+..|-+...
T Consensus 94 ~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~ 143 (192)
T cd03232 94 LTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA 143 (192)
T ss_pred CcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHH
Confidence 333444432211 33333 333444444578889999999999988654
No 80
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.10 E-value=4.8e-06 Score=90.06 Aligned_cols=107 Identities=23% Similarity=0.292 Sum_probs=64.3
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH----------------HhHcCCeecCCCc-----ccchhhhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------LAQVGADVPAEIF-----EISPVDRI 1073 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi----------------lAQiG~~VPA~~a-----~l~~~d~i 1073 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+.- -.++ .|||.... ..++.+.+
T Consensus 14 ~l~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i-~~v~q~~~~~~~~~~tv~e~l 91 (213)
T cd03235 14 VLEDVSFEV-KPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI-GYVPQRRSIDRDFPISVRDVV 91 (213)
T ss_pred eeecceeEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhhe-EEeccccccccCCCCcHHHHH
Confidence 445566655 3578999999999999999999976531 1123 36665432 12333333
Q ss_pred -------------------------hhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHH
Q 001187 1074 -------------------------FVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1074 -------------------------~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~D 1123 (1129)
+.++|..+.+....++++..+++...| ..-+.++.++||||+..|-++.-
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~ 167 (213)
T cd03235 92 LMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT 167 (213)
T ss_pred HhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 222222222222234455555443333 33467899999999999988754
No 81
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.10 E-value=5.1e-06 Score=92.70 Aligned_cols=108 Identities=18% Similarity=0.126 Sum_probs=66.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH---------------H-hHcCCeecCCCcc---cchhhh--
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------L-AQVGADVPAEIFE---ISPVDR-- 1072 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi---------------l-AQiG~~VPA~~a~---l~~~d~-- 1072 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- + .++ .|||.+... +++.+.
T Consensus 26 ~il~~isl~i-~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i-~~v~q~~~l~~~~tv~enl~ 103 (257)
T PRK11247 26 TVLNQLDLHI-PAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDT-RLMFQDARLLPWKKVIDNVG 103 (257)
T ss_pred ceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCce-EEEecCccCCCCCcHHHHHH
Confidence 3556677765 3578999999999999999999985431 0 112 255554321 223332
Q ss_pred -------------hhhccCccchHhhcccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1073 -------------IFVRMGAKDHIMAGQSTFLTELSETAL-MLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1073 -------------i~trig~~d~i~~g~StF~~em~e~~~-il~~at~~sLvllDElGRGTst~D 1123 (1129)
++.++|..+.+....+.++..+++... +..-+.++.++||||+..|-++..
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~ 168 (257)
T PRK11247 104 LGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168 (257)
T ss_pred hcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 233344433333333455555555333 333478899999999999988754
No 82
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.10 E-value=4.7e-06 Score=93.65 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=63.6
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH------------------------H-hHcCCeecCCCc---c
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------------L-AQVGADVPAEIF---E 1066 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi------------------------l-AQiG~~VPA~~a---~ 1066 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+.- . .++| |||.+.. .
T Consensus 39 il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 116 (269)
T cd03294 39 GVNDVSLDV-REGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS-MVFQSFALLPH 116 (269)
T ss_pred EeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE-EEecCcccCCC
Confidence 445666665 3578999999999999999999986530 0 1232 5554421 1
Q ss_pred cchhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1067 ISPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1067 l~~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+++.+.| +.++|..+.+......++..+++ ++.+..-+.++.++||||+..|-++.-
T Consensus 117 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~ 195 (269)
T cd03294 117 RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLI 195 (269)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 2222322 22233332222223344444444 333344578899999999999988764
No 83
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.10 E-value=5.2e-06 Score=90.97 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=63.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------Hh--HcCCeecCCCc---ccc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LA--QVGADVPAEIF---EIS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lA--QiG~~VPA~~a---~l~ 1068 (1129)
.+.+|+++.. ..+.+++|+||||+|||||||.++.+.- .. ++ .|||.... .++
T Consensus 14 ~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~t 91 (232)
T cd03218 14 KVVNGVSLSV-KQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI-GYLPQEASIFRKLT 91 (232)
T ss_pred EeeccceeEe-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE-EEecCCccccccCc
Confidence 3556677665 3578999999999999999999985420 01 12 25555431 123
Q ss_pred hhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1069 PVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1069 ~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+.+ +.++|..+.+......++..+++ ++.+..-+.++.++||||+-.|-++.-
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 168 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA 168 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 33322 22222222222222344444443 444444578899999999999988754
No 84
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=6.1e-06 Score=91.78 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=29.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 19 ~~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 19 LAVNNVNLEV-REQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EEEEeeeeEE-cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4556667765 35789999999999999999999865
No 85
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.10 E-value=7.8e-06 Score=89.32 Aligned_cols=109 Identities=21% Similarity=0.201 Sum_probs=65.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------HhHcCCeecCCCcc--cchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE--ISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lAQiG~~VPA~~a~--l~~~d 1071 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- ..+.-+|||.+..- .++.+
T Consensus 21 ~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e 99 (225)
T PRK10247 21 KILNNISFSL-RAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYD 99 (225)
T ss_pred eeeeccEEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHH
Confidence 4667777776 4578999999999999999999986531 11112356654221 12222
Q ss_pred h-------------------hhhccCccc-hHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1072 R-------------------IFVRMGAKD-HIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 ~-------------------i~trig~~d-~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
. ++.++|..+ .+.....+++..+ ++++.+..-+.+++++||||+..|-+..-
T Consensus 100 nl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (225)
T PRK10247 100 NLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESN 172 (225)
T ss_pred HHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 2 222333321 1122223343333 34444444578999999999999988653
No 86
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.09 E-value=5.4e-06 Score=86.77 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=55.7
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCc------------------ccchhh---hh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIF------------------EISPVD---RI 1073 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a------------------~l~~~d---~i 1073 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+ .-|.+.. .++++. .+
T Consensus 17 ~l~~~~~~i-~~Ge~~~i~G~nGsGKStLl~~l~G~--------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 87 (173)
T cd03246 17 VLRNVSFSI-EPGESLAIIGPSGSGKSTLARLILGL--------LRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDEL 87 (173)
T ss_pred ceeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHHhc--------cCCCCCeEEECCEEcccCCHHHHHhheEEECCCCcc
Confidence 334455544 34689999999999999999999843 2222110 000000 01
Q ss_pred hhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1074 FVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1074 ~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
|. ....|++ .|. .|.++++.+..-+++++++||||+-.|-+...-
T Consensus 88 ~~-~tv~~~l---LS~--G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~ 132 (173)
T cd03246 88 FS-GSIAENI---LSG--GQRQRLGLARALYGNPRILVLDEPNSHLDVEGE 132 (173)
T ss_pred cc-CcHHHHC---cCH--HHHHHHHHHHHHhcCCCEEEEECCccccCHHHH
Confidence 11 0111222 222 344445555556889999999999999887643
No 87
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.09 E-value=5.8e-06 Score=89.70 Aligned_cols=107 Identities=19% Similarity=0.233 Sum_probs=63.2
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------HhHcCCeecCCCc---ccchhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF---EISPVD 1071 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lAQiG~~VPA~~a---~l~~~d 1071 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+.- ..++| |||.... .+++.+
T Consensus 20 il~~~sl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e 97 (218)
T cd03266 20 AVDGVSFTV-KPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG-FVSDSTGLYDRLTARE 97 (218)
T ss_pred eecceEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE-EecCCcccCcCCCHHH
Confidence 455666665 3568999999999999999999986531 11222 5555421 123333
Q ss_pred hh---------------------hhccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1072 RI---------------------FVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 ~i---------------------~trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+ +.++|..+.+......++..+ ++++.+..-+.++.++||||+-.|-+...
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 171 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMA 171 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHH
Confidence 22 222333222222222333333 33444444578899999999999988754
No 88
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.08 E-value=5.2e-06 Score=91.17 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=28.2
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 15 ~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 15 ALDDVSFSV-RPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EecCceEEe-cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 445566665 35789999999999999999999854
No 89
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.08 E-value=6.4e-06 Score=89.54 Aligned_cols=107 Identities=18% Similarity=0.250 Sum_probs=64.7
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H----------H--hHcCCeecCCCc---c
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I----------L--AQVGADVPAEIF---E 1066 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i----------l--AQiG~~VPA~~a---~ 1066 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+. + + .++ .|||.... .
T Consensus 20 ~l~~isl~i-~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i-~~v~q~~~~~~~ 97 (221)
T TIGR02211 20 VLKGVSLSI-GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKL-GFIYQFHHLLPD 97 (221)
T ss_pred eEeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcE-EEEecccccCCC
Confidence 445566655 357899999999999999999997542 0 0 123 36665532 1
Q ss_pred cchhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1067 ISPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1067 l~~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+++.+.+ +.++|..+.+.....+++..+++ ++.+..-+.++.++||||+-.|-+..-
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 176 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176 (221)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHH
Confidence 2333333 22233322222233445444444 433444578899999999999988754
No 90
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.08 E-value=5.9e-06 Score=89.32 Aligned_cols=107 Identities=18% Similarity=0.172 Sum_probs=62.4
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcC-------------------CeecCCCc---ccchhhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG-------------------ADVPAEIF---EISPVDR 1072 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG-------------------~~VPA~~a---~l~~~d~ 1072 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+.- ..-| .|||.... .+++.+.
T Consensus 15 ~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (213)
T cd03301 15 ALDDLNLDI-ADGEFVVLLGPSGCGKTTTLRMIAGLEE-PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDN 92 (213)
T ss_pred eeeceEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHH
Confidence 445666665 3578999999999999999999986531 0111 24554321 1222222
Q ss_pred h---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1073 I---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1073 i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+ +.++|..+.+....++++..+++ ++.+..-+.++.++||||+-.|-++..
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 165 (213)
T cd03301 93 IAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL 165 (213)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 2 22333322222222344444444 333333467889999999999988754
No 91
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.07 E-value=4.4e-06 Score=90.03 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=29.5
Q ss_pred CcccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1012 ~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.-|-.|++... +.+.=++|+||||+||||||+.++
T Consensus 43 gk~iL~~isW~V-~~ge~W~I~G~NGsGKTTLL~ll~ 78 (257)
T COG1119 43 GKKILGDLSWQV-NPGEHWAIVGPNGAGKTTLLSLLT 78 (257)
T ss_pred CEeeccccceee-cCCCcEEEECCCCCCHHHHHHHHh
Confidence 456777888766 345669999999999999999987
No 92
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=7e-06 Score=90.41 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=28.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 15 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 15 KALKDVSLSI-NPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3455666665 35789999999999999999999754
No 93
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.06 E-value=3.1e-06 Score=84.58 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=25.1
Q ss_pred ccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1018 di~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
++++.. ..+.+++|+||||+|||||||.++-.
T Consensus 3 ~v~~~i-~~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 3 NVSLEI-KPGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEE-ETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred ceEEEE-cCCCEEEEEccCCCccccceeeeccc
Confidence 444444 34679999999999999999998733
No 94
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=9e-06 Score=90.65 Aligned_cols=108 Identities=19% Similarity=0.115 Sum_probs=63.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcC----------------CeecCCCc---ccchhhhh-
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------------ADVPAEIF---EISPVDRI- 1073 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG----------------~~VPA~~a---~l~~~d~i- 1073 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- ..-| .|||.... .+++.+.+
T Consensus 15 ~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~ 92 (255)
T PRK11248 15 PALEDINLTL-ESGELLVVLGPSGCGKTTLLNLIAGFVP-YQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVA 92 (255)
T ss_pred eeEeeeeEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHH
Confidence 3556666665 3578999999999999999999985431 0111 24554321 12232222
Q ss_pred --------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1074 --------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1074 --------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.++|..+.+....++++..+++ ++.+..-+.++.++||||+..|-++.-
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~ 163 (255)
T PRK11248 93 FGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163 (255)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 22333322222222344444443 444444578899999999999988754
No 95
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.05 E-value=7.2e-06 Score=88.51 Aligned_cols=106 Identities=15% Similarity=0.232 Sum_probs=62.5
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc---ccchhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPVD 1071 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a---~l~~~d 1071 (1129)
+-+|+++... .+ +++|+||||+|||||||.++.+. +-.++ .|||.+.. .+++.+
T Consensus 15 ~l~~vs~~i~-~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~~ 91 (211)
T cd03264 15 ALDGVSLTLG-PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI-GYLPQEFGVYPNFTVRE 91 (211)
T ss_pred EEcceeEEEc-CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhhe-EEecCCCcccccCCHHH
Confidence 5566777653 36 89999999999999999998542 11223 35665532 123333
Q ss_pred hh---------------------hhccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1072 RI---------------------FVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 ~i---------------------~trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+ +.++|..+.+......++..+ ++++.+..-+.++.++||||+-.|-+...
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 165 (211)
T cd03264 92 FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165 (211)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 32 222222221111222333333 33444444578999999999999987653
No 96
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.05 E-value=1.1e-05 Score=86.31 Aligned_cols=108 Identities=18% Similarity=0.143 Sum_probs=64.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCcc---cchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIFE---ISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a~---l~~~ 1070 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++... .-.++| |+|..... +++.
T Consensus 14 ~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 14 MLFEGLSFTL-NAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNIL-YLGHLPGLKPELSAL 91 (198)
T ss_pred EEEeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheE-EeccCcccccCCcHH
Confidence 4556677765 357899999999999999999987542 001233 55543211 2333
Q ss_pred hhh-----------------hhccCccchHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DRI-----------------FVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~i-----------------~trig~~d~i~~g~StF~~-em~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+ +.++|..+.+.....+++. |.++++.+..-+.++.++||||+-.|-+...
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 162 (198)
T TIGR01189 92 ENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162 (198)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 322 2223332222222234433 3444554445578899999999999998754
No 97
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=7.1e-06 Score=90.07 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=64.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------------H--hHcCCeecCCCc---
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------L--AQVGADVPAEIF--- 1065 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------------l--AQiG~~VPA~~a--- 1065 (1129)
.+-++++|.. ..+.+++|+||||+|||||||.++.+.- + ..+ .|||.+..
T Consensus 23 ~il~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i-~~v~q~~~~~~ 100 (233)
T PRK11629 23 DVLHNVSFSI-GEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKL-GFIYQFHHLLP 100 (233)
T ss_pred eeEEeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccE-EEEecCcccCC
Confidence 4666777765 3578999999999999999999986530 0 112 25555422
Q ss_pred ccchhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1066 EISPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1066 ~l~~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+++.+.+ +.++|..+.+......++..+++ ++.+..-+.++.++||||+..|-++.-
T Consensus 101 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 180 (233)
T PRK11629 101 DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180 (233)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 12333332 22233222222222334444444 444444578899999999999998753
No 98
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.04 E-value=1e-05 Score=89.26 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=28.5
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 15 ~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 15 ILKGVNLTV-KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEeccceEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445566665 35789999999999999999999865
No 99
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.04 E-value=7e-06 Score=90.37 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=30.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||+++.+
T Consensus 35 ~il~~vs~~i-~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 35 EALKGISFTI-EKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred eeeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667777776 35789999999999999999999854
No 100
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.04 E-value=7.2e-06 Score=90.22 Aligned_cols=109 Identities=21% Similarity=0.282 Sum_probs=65.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H-------HhHcCCeecCCC---cccchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I-------LAQVGADVPAEI---FEISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i-------lAQiG~~VPA~~---a~l~~~ 1070 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+. + +.++ .|+|.+. ..+++.
T Consensus 15 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i-~~~~q~~~~~~~~t~~ 92 (236)
T TIGR03864 15 RALDDVSFTV-RPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARL-GVVFQQPTLDLDLSVR 92 (236)
T ss_pred EEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhE-EEeCCCCCCcccCcHH
Confidence 3555666665 357899999999999999999998553 0 1112 3555542 122333
Q ss_pred hhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1071 DRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1071 d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
+.+ +.++|..+.+......++..+++ ++.+..-+.+++++||||+..|-++..-
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 168 (236)
T TIGR03864 93 QNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASR 168 (236)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence 332 22222222222223344444443 4444445788999999999999887643
No 101
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.04 E-value=6.9e-06 Score=88.23 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=62.3
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcC--------CeecCCCc--ccchhhhhhh---------
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPAEIF--EISPVDRIFV--------- 1075 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG--------~~VPA~~a--~l~~~d~i~t--------- 1075 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+. -..-| .|||.... ..++.+.+.-
T Consensus 20 il~~~s~~i-~~G~~~~i~G~nG~GKSTLl~~i~G~~-~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~ 97 (204)
T cd03250 20 TLKDINLEV-PKGELVAIVGPVGSGKSSLLSALLGEL-EKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERY 97 (204)
T ss_pred eeeeeeEEE-CCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHH
Confidence 445566655 357899999999999999999998653 12222 35555421 2233333321
Q ss_pred -----ccCccchHh-----------hcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1076 -----RMGAKDHIM-----------AGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1076 -----rig~~d~i~-----------~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.++..+.+. .....++..+++ ++.+..-+.++.++|+||+..|.++..
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 162 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 111111111 111334333333 443444578899999999999998754
No 102
>PRK10908 cell division protein FtsE; Provisional
Probab=98.03 E-value=8.6e-06 Score=88.70 Aligned_cols=108 Identities=17% Similarity=0.185 Sum_probs=64.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------------H-hHcCCeecCCCc---c
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------L-AQVGADVPAEIF---E 1066 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------------l-AQiG~~VPA~~a---~ 1066 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- + .++ .|||.+.. .
T Consensus 16 ~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i-~~~~q~~~~~~~ 93 (222)
T PRK10908 16 QALQGVTFHM-RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI-GMIFQDHHLLMD 93 (222)
T ss_pred eEEeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe-EEEecCcccccc
Confidence 3455666665 3578999999999999999999975530 1 122 36665432 1
Q ss_pred cchhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1067 ISPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1067 l~~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+++.+.+ +.++|..+.+....++++..+++ ++.+..-+..+.++||||+..|-+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 2333332 22223222222223445444444 333333467889999999999988753
No 103
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.03 E-value=6.4e-06 Score=90.32 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=60.2
Q ss_pred ccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcC----------------CeecCCCc---ccchhhhh-----
Q 001187 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------------ADVPAEIF---EISPVDRI----- 1073 (1129)
Q Consensus 1018 di~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG----------------~~VPA~~a---~l~~~d~i----- 1073 (1129)
++++.. ..+.+++|+||||+|||||||.++.+.- ..-| .|||.+.. .+++.+.+
T Consensus 3 ~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 3 GVNLTI-QQGEFISLIGHSGCGKSTLLNLISGLAQ-PTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred ceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 344443 3467999999999999999999985531 1111 25554421 13344433
Q ss_pred ------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1074 ------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1074 ------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
+.++|..+.+....+.++..+++ ++.+..-+.++.++||||+-.|-+..--
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 11222222122222344444444 3333345678899999999999887543
No 104
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.03 E-value=8.4e-06 Score=87.89 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=64.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH------------------HhHcCCeecCCCc---ccchhhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------LAQVGADVPAEIF---EISPVDR 1072 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi------------------lAQiG~~VPA~~a---~l~~~d~ 1072 (1129)
.+-+++++.. ..+.+++|+||||+||||||+.++.+.- -.++ +|||.... .+++.+.
T Consensus 16 ~~l~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 16 VLFSGLSFTL-AAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC-HYLGHRNAMKPALTVAEN 93 (207)
T ss_pred EEEeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhc-EEecCCCcCCCCCcHHHH
Confidence 4566777765 3578999999999999999999986531 1123 35553321 1233333
Q ss_pred h-----------------hhccCccchHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1073 I-----------------FVRMGAKDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1073 i-----------------~trig~~d~i~~g~StF~~em~-e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+ +..+|..+.......+++..++ +++.+...+.++.|+||||+..|-++.-
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 162 (207)
T PRK13539 94 LEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162 (207)
T ss_pred HHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 2 2222332222222234444443 3444444577889999999999988653
No 105
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.03 E-value=6.4e-06 Score=95.53 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=67.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H-----------HhHcCCeecCCCcc---
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I-----------LAQVGADVPAEIFE--- 1066 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i-----------lAQiG~~VPA~~a~--- 1066 (1129)
.+-+|++|.. ..+.+++|.||||+|||||||+|+.+. + -.+|| |||....-
T Consensus 19 ~~L~~vsl~i-~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig-~v~Q~~~l~~~ 96 (343)
T TIGR02314 19 QALNNVSLHV-PAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIG-MIFQHFNLLSS 96 (343)
T ss_pred EEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEE-EEECCcccccc
Confidence 3566777776 457899999999999999999998663 0 01233 45544211
Q ss_pred cchhhh---------------------hhhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHH
Q 001187 1067 ISPVDR---------------------IFVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1067 l~~~d~---------------------i~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~D 1123 (1129)
.++.+. ++.++|..+......+.++..+++-..| ..-+++++++|+||...|.++.-
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t 175 (343)
T TIGR02314 97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 223232 2333444433333345555555553333 33478999999999999987753
No 106
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.03 E-value=5.6e-06 Score=89.00 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=63.9
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc---ccchhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPVD 1071 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a---~l~~~d 1071 (1129)
+-+|+++.. ..+.+++|+||||+|||||+|.++... +-.++| |||.... .+++.+
T Consensus 16 ~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~tv~e 93 (204)
T PRK13538 16 LFSGLSFTL-NAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL-YLGHQPGIKTELTALE 93 (204)
T ss_pred EEecceEEE-CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheE-EeCCccccCcCCcHHH
Confidence 456667765 357899999999999999999997542 111232 3433221 122322
Q ss_pred h------------------hhhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1072 R------------------IFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1072 ~------------------i~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
. +..++|..+......+.++..+++ ++.+..-+.++.++||||+-.|-+...-.
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 166 (204)
T PRK13538 94 NLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVA 166 (204)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 2 222333332222223444444433 44444457899999999999998876543
No 107
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.02 E-value=8e-06 Score=93.34 Aligned_cols=33 Identities=39% Similarity=0.654 Sum_probs=29.5
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+-+|++|.. ..+.+++|.||||+||||+||+||
T Consensus 18 ~l~~i~l~i-~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 18 VLKDVNLDI-EDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred eeecceEEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 777888876 467899999999999999999999
No 108
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=5.6e-06 Score=93.30 Aligned_cols=109 Identities=20% Similarity=0.106 Sum_probs=65.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCC----cccc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEI----FEIS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~----a~l~ 1068 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+. +..++| |||... ...+
T Consensus 19 ~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~t 96 (274)
T PRK13647 19 KALKGLSLSI-PEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG-LVFQDPDDQVFSST 96 (274)
T ss_pred eeeeeEEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE-EEecChhhhhccCc
Confidence 3566777765 457899999999999999999998542 111232 555542 1123
Q ss_pred hhhhhh---------------------hccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1069 PVDRIF---------------------VRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1069 ~~d~i~---------------------trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~DG 1124 (1129)
+.+.|. .++|..+.+.....+++..+++...| ..-+.+++++||||+..|-+...-
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 174 (274)
T PRK13647 97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQ 174 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence 333332 12222221222223444444443333 334788999999999999887643
No 109
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=7.8e-06 Score=91.94 Aligned_cols=108 Identities=13% Similarity=0.145 Sum_probs=65.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------Hh-HcCCeecCCCc----ccc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LA-QVGADVPAEIF----EIS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lA-QiG~~VPA~~a----~l~ 1068 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- +. ++ .|||.+.. .++
T Consensus 23 ~il~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i-~~v~q~~~~~~~~~t 100 (271)
T PRK13632 23 NALKNVSFEI-NEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI-GIIFQNPDNQFIGAT 100 (271)
T ss_pred cceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce-EEEEeCHHHhcCccc
Confidence 4667777765 3578999999999999999999986631 11 12 35665421 223
Q ss_pred hhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1069 PVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1069 ~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+.| +.++|..+.+......++..+++ ++.+..-+.+++|+||||+..|-+...
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~ 177 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKG 177 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 33333 12223222222223344444443 444444578899999999999988753
No 110
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.01 E-value=1.2e-05 Score=86.17 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=63.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------------HH-hHcCCeecCCCc---ccchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------------IL-AQVGADVPAEIF---EISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------------il-AQiG~~VPA~~a---~l~~~ 1070 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+. .+ .++| |||.+.. .+++.
T Consensus 14 ~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 91 (201)
T cd03231 14 ALFSGLSFTL-AAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLL-YLGHAPGIKTTLSVL 91 (201)
T ss_pred eeeccceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheE-EeccccccCCCcCHH
Confidence 4556777765 357899999999999999999987542 01 1222 4443321 12333
Q ss_pred hhh---------------hhccCccchHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DRI---------------FVRMGAKDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~i---------------~trig~~d~i~~g~StF~~em~-e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+ +.++|..+.......++...++ +++.+..-+.++.++||||+..|-+...
T Consensus 92 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~ 160 (201)
T cd03231 92 ENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAG 160 (201)
T ss_pred HHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 332 2233332222222233443333 3444444578899999999999988654
No 111
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.01 E-value=1.6e-05 Score=85.13 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=57.0
Q ss_pred eEEEEecCCCchhHHHHHHHHHH---------------H-H-----------hHcCCeecCCCcc-c-----chhhhhhh
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAV---------------I-L-----------AQVGADVPAEIFE-I-----SPVDRIFV 1075 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~v---------------i-l-----------AQiG~~VPA~~a~-l-----~~~d~i~t 1075 (1129)
+++|+||||+||||+|+.++.+. + . +++| +||..... + .-++.++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~vfq~~~~~~~~~~~~~~~~~l~ 102 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVT-LTFDNSDGRYSIISQGDVSEIIE 102 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEE-EEEEcCCCceeEEehhhHHHHHh
Confidence 89999999999999999998653 1 0 1222 23322111 1 11344444
Q ss_pred ccCccchHhhcccchHHHHHHHHHHHHh--CCCCcEEEEeCCCCCCChHHHHh
Q 001187 1076 RMGAKDHIMAGQSTFLTELSETALMLSS--ATRNSLVVLDELGRGTSTSDGQA 1126 (1129)
Q Consensus 1076 rig~~d~i~~g~StF~~em~e~~~il~~--at~~sLvllDElGRGTst~DG~A 1126 (1129)
+-+..+......|.-+..+..++..|.. ..++.++||||+..|.++..-..
T Consensus 103 ~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~ 155 (197)
T cd03278 103 APGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVER 155 (197)
T ss_pred CCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHH
Confidence 4222233334445555555555555532 35668999999999998765433
No 112
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.01 E-value=1.1e-05 Score=88.20 Aligned_cols=37 Identities=32% Similarity=0.298 Sum_probs=30.5
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..+-+|+++.. ..+.+++|+||||+|||||+|.++.+
T Consensus 35 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 35 FWALKDVSFEV-PRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred eEEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34667777776 45789999999999999999999854
No 113
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.01 E-value=1e-05 Score=89.24 Aligned_cols=108 Identities=18% Similarity=0.129 Sum_probs=63.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH-------------------hHcCCeecCCCc---ccchhhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIF---EISPVDR 1072 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil-------------------AQiG~~VPA~~a---~l~~~d~ 1072 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+.-- .++ .|||.... .+++.+.
T Consensus 17 il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i-~~v~q~~~~~~~~tv~e~ 94 (239)
T cd03296 17 ALDDVSLDI-PSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNV-GFVFQHYALFRHMTVFDN 94 (239)
T ss_pred eeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccce-EEEecCCcccCCCCHHHH
Confidence 455666665 35789999999999999999999865310 012 25554421 1233333
Q ss_pred h-------------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1073 I-------------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1073 i-------------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
+ +.++|..+.+.....+++..+++ ++.+..-+.++.++||||+-.|-++..-
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 172 (239)
T cd03296 95 VAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 172 (239)
T ss_pred HhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 2 22222221111222344444444 3333445788899999999999987643
No 114
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.01 E-value=9.8e-06 Score=90.04 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=29.2
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 15 ~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 15 VLDGLNFSV-AAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred EEeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556677766 45789999999999999999999854
No 115
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.01 E-value=8.4e-06 Score=88.24 Aligned_cols=106 Identities=17% Similarity=0.137 Sum_probs=62.2
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH------------------HhHcCCeecCCCc---ccchhhhhh-
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------LAQVGADVPAEIF---EISPVDRIF- 1074 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi------------------lAQiG~~VPA~~a---~l~~~d~i~- 1074 (1129)
.|+++.. ..+.+++|+||||+|||||||.++.+.- ..+.-.|||.+.. .+++.+.+.
T Consensus 15 ~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 15 MEFDLNV-ADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred eeeEEEE-eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 3555554 3578999999999999999999986531 1111236666532 233444432
Q ss_pred --------------------hccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1075 --------------------VRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1075 --------------------trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.++|..+.+.....+++..+++ ++.+..-+.+++++||||+-.|-+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~ 163 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL 163 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 2222221111112234333333 443344578899999999999988754
No 116
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.01 E-value=1.1e-05 Score=88.96 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=64.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH---------------------H-hHcCCeecCCCc---ccc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------L-AQVGADVPAEIF---EIS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi---------------------l-AQiG~~VPA~~a---~l~ 1068 (1129)
.+.+|++|.. ..+.+++|+||||+|||||||.++.+.- . .++ .|||.... .++
T Consensus 17 ~~l~~~sl~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~t 94 (241)
T PRK10895 17 RVVEDVSLTV-NSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI-GYLPQEASIFRRLS 94 (241)
T ss_pred EEEeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe-EEeccCCcccccCc
Confidence 4667777776 4578999999999999999999986531 0 112 25555431 133
Q ss_pred hhhhhh----------------------hccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1069 PVDRIF----------------------VRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1069 ~~d~i~----------------------trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+.+. .++|..+.......+++..+++ ++.+..-+.+++++||||+-.|-+...
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (241)
T PRK10895 95 VYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS 172 (241)
T ss_pred HHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 444332 1122111111112334334433 344444578899999999999988653
No 117
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.00 E-value=2.6e-06 Score=88.87 Aligned_cols=108 Identities=25% Similarity=0.300 Sum_probs=70.5
Q ss_pred CcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcC-CeecCCCc---cc
Q 001187 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVG-ADVPAEIF---EI 1067 (1129)
Q Consensus 1012 ~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG-~~VPA~~a---~l 1067 (1129)
...|-||++|.. ..+.++.|.||||+||||..-+|..++ --|++| .|+|.+.. .+
T Consensus 16 kr~Vv~~Vsl~v-~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~L 94 (243)
T COG1137 16 KRKVVNDVSLEV-NSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKL 94 (243)
T ss_pred CeeeeeeeeEEE-cCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcC
Confidence 457889999987 468999999999999999999987554 237777 47777643 35
Q ss_pred chhhhhhhccCccc-h------------Hhh-----------cccchHHHH--HHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 001187 1068 SPVDRIFVRMGAKD-H------------IMA-----------GQSTFLTEL--SETALMLSSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1068 ~~~d~i~trig~~d-~------------i~~-----------g~StF~~em--~e~~~il~~at~~sLvllDElGRGTst 1121 (1129)
++.|.|..-+-... + +.+ +.|---.|- .|+|.+| |+.++++||||+..|-+|
T Consensus 95 tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaL--a~~P~fiLLDEPFAGVDP 172 (243)
T COG1137 95 TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARAL--AANPKFILLDEPFAGVDP 172 (243)
T ss_pred cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHH--hcCCCEEEecCCccCCCc
Confidence 55555544332211 0 000 011111122 2355555 678999999999999987
Q ss_pred H
Q 001187 1122 S 1122 (1129)
Q Consensus 1122 ~ 1122 (1129)
.
T Consensus 173 i 173 (243)
T COG1137 173 I 173 (243)
T ss_pred h
Confidence 4
No 118
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.00 E-value=1.6e-05 Score=86.84 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=65.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-----H-------------------H----hHcCCeecCCCc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-----I-------------------L----AQVGADVPAEIF 1065 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-----i-------------------l----AQiG~~VPA~~a 1065 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+. - . .++ .|||....
T Consensus 14 ~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i-~~~~q~~~ 91 (227)
T cd03260 14 HALKDISLDI-PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRV-GMVFQKPN 91 (227)
T ss_pred eeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhE-EEEecCch
Confidence 3455666665 357899999999999999999998664 1 0 122 25665531
Q ss_pred --ccchhhhh----------------------hhccCccchHhhc--ccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCC
Q 001187 1066 --EISPVDRI----------------------FVRMGAKDHIMAG--QSTFLTELSETALMLS-SATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1066 --~l~~~d~i----------------------~trig~~d~i~~g--~StF~~em~e~~~il~-~at~~sLvllDElGRG 1118 (1129)
.+++.+.+ +.++|..+.+... ...++..+++...|.+ -+.++.++||||+-.|
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 171 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 12333322 2233333222222 1455555555444433 4678899999999999
Q ss_pred CChHH
Q 001187 1119 TSTSD 1123 (1129)
Q Consensus 1119 Tst~D 1123 (1129)
-+..-
T Consensus 172 LD~~~ 176 (227)
T cd03260 172 LDPIS 176 (227)
T ss_pred CCHHH
Confidence 88754
No 119
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.99 E-value=1.3e-05 Score=88.91 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=60.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcC---------CeecCCCc---ccchhhhh-----------------hhc
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVG---------ADVPAEIF---EISPVDRI-----------------FVR 1076 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG---------~~VPA~~a---~l~~~d~i-----------------~tr 1076 (1129)
.+.+++|+||||+|||||||.++.+.- ..-| .|+|.... ..++.+.+ +.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~-p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~ 102 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK-PDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP 102 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence 467999999999999999999985431 1111 25555421 22333322 223
Q ss_pred cCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHh
Q 001187 1077 MGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1129)
Q Consensus 1077 ig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~DG~A 1126 (1129)
+|..+.+....++++..+ ++++.+..-+.+++++||||+-.|-+...-..
T Consensus 103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~ 153 (246)
T cd03237 103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLM 153 (246)
T ss_pred cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 333322223334554444 44444455678999999999999988765443
No 120
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.99 E-value=1.1e-05 Score=90.13 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=29.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-++++|.. ..+.+++|+||||+|||||||.|+.+
T Consensus 18 ~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 18 QALHAVDLNI-HHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred EEEecceEEE-cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3556677765 35789999999999999999999854
No 121
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.99 E-value=9.2e-06 Score=89.47 Aligned_cols=109 Identities=18% Similarity=0.093 Sum_probs=63.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH------------------HhHcCCeecCCCcc---cchhhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------LAQVGADVPAEIFE---ISPVDR 1072 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi------------------lAQiG~~VPA~~a~---l~~~d~ 1072 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+.- ..+.-.|||..... +++.+.
T Consensus 14 ~il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~en 92 (237)
T TIGR00968 14 QALDDVNLEV-PTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDN 92 (237)
T ss_pred eeeeeEEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHH
Confidence 3556666665 3578999999999999999999986520 00111356654211 122222
Q ss_pred ---------------------hhhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1073 ---------------------IFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1073 ---------------------i~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
++.++|..+.+......|+..+++ ++.+..-+.+++++||||+-.|-+..-
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 165 (237)
T TIGR00968 93 IAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165 (237)
T ss_pred HHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 233333332222222345444443 444444577889999999999987653
No 122
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.99 E-value=1e-05 Score=88.55 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=28.5
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 15 ~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 15 ILRGVSLEV-PKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred EecceeeEE-CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445666665 35789999999999999999998855
No 123
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.99 E-value=1.5e-05 Score=93.02 Aligned_cols=107 Identities=19% Similarity=0.165 Sum_probs=63.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH-------------------hHcCCeecCCCcc---cchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIFE---ISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil-------------------AQiG~~VPA~~a~---l~~~d 1071 (1129)
.+-+|++|.. ..+.+++|.||||+|||||||+|+.+.-. .++| |||...+- +++.+
T Consensus 18 ~~l~~vsl~i-~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig-~v~Q~~~lfp~~tv~e 95 (356)
T PRK11650 18 QVIKGIDLDV-ADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIA-MVFQNYALYPHMSVRE 95 (356)
T ss_pred EEEeeeeEEE-cCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE-EEeCCccccCCCCHHH
Confidence 4556677766 35789999999999999999999865310 1122 45444321 23333
Q ss_pred hh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChH
Q 001187 1072 RI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1072 ~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~ 1122 (1129)
.| +.++|..+.+.....+++..+++ ++.+..-+.+++|+||||+-.|-+..
T Consensus 96 Ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~ 168 (356)
T PRK11650 96 NMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAK 168 (356)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 32 22223322222222344343333 44444457899999999999988765
No 124
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.99 E-value=1.5e-05 Score=86.56 Aligned_cols=105 Identities=24% Similarity=0.219 Sum_probs=65.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------HHhH----cC---CeecCCCcccch---hh----
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------ILAQ----VG---ADVPAEIFEISP---VD---- 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------ilAQ----iG---~~VPA~~a~l~~---~d---- 1071 (1129)
-+-.|++|.. ..+.|+.|.||.|+|||||||.||.+. +..+ .| .||..+.+-+|+ .|
T Consensus 17 ~vl~~i~L~v-~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l 95 (248)
T COG1116 17 EVLEDINLSV-EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVAL 95 (248)
T ss_pred EEeccceeEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhee
Confidence 4566777776 467899999999999999999999543 1000 00 134444333222 22
Q ss_pred -----------------hhhhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCC
Q 001187 1072 -----------------RIFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1072 -----------------~i~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGT 1119 (1129)
..+..+|..+.-.+--...+..|++-..|.+ .+.++.++||||...--
T Consensus 96 ~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgAL 161 (248)
T COG1116 96 GLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161 (248)
T ss_pred hhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchh
Confidence 2333333333333333455678888777666 47899999999987543
No 125
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.99 E-value=1.2e-05 Score=94.28 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=65.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------------------HhHcCCeecCCCc---ccchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIF---EISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------------------lAQiG~~VPA~~a---~l~~~d 1071 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.|+.+.- ..++ .|||.+.. .+++.+
T Consensus 17 ~vl~~vsl~i-~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i-~~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 17 VISKDINLDI-HEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGV-GMVFQSYALYPHLSVAE 94 (369)
T ss_pred EEEeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCE-EEEeCCcccCCCCCHHH
Confidence 3556777766 3578999999999999999999986531 0112 25555432 223333
Q ss_pred hh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1072 RI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 ~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.| +.++|..+.+....++++..+++ ++.+..-+.++.++||||+..|-+..-
T Consensus 95 ni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~ 168 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168 (369)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 33 22223222222222344444444 444444578899999999999988754
No 126
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=1.1e-05 Score=91.15 Aligned_cols=111 Identities=17% Similarity=0.219 Sum_probs=67.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCC----cccc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEI----FEIS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~----a~l~ 1068 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. +...+| |||... ...+
T Consensus 21 ~~l~~vsl~i-~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~-~~~q~~~~~~~~~t 98 (279)
T PRK13635 21 YALKDVSFSV-YEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG-MVFQNPDNQFVGAT 98 (279)
T ss_pred cceeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE-EEEeCHHHhccccc
Confidence 3556677765 357899999999999999999998553 111232 555432 1123
Q ss_pred hhhhh---------------------hhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHHHHh
Q 001187 1069 PVDRI---------------------FVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSDGQA 1126 (1129)
Q Consensus 1069 ~~d~i---------------------~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~DG~A 1126 (1129)
+.+.| +.++|..+.+..-..+++..+++...| ..-+.+++|+||||+-.|.++..-..
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 178 (279)
T PRK13635 99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178 (279)
T ss_pred HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 33333 222333333333334555455443333 33478899999999999998765433
No 127
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=1e-05 Score=91.06 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=29.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 15 ~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 15 PVLKGLNLDF-SLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred ccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3566677765 35789999999999999999998754
No 128
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.98 E-value=1.4e-05 Score=85.78 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=57.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-HHhHcC----------------------CeecCCCcccchhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-ILAQVG----------------------ADVPAEIFEISPVD 1071 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-ilAQiG----------------------~~VPA~~a~l~~~d 1071 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+. +-..-| .|||...
T Consensus 15 ~l~~is~~i-~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~------- 86 (200)
T cd03217 15 ILKGVNLTI-KKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYP------- 86 (200)
T ss_pred eeeccceEE-CCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecCh-------
Confidence 445566655 357899999999999999999998441 001111 1122111
Q ss_pred hhhhccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1072 RIFVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 ~i~trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+|..+...+.+..-...+...+ ++++.+..-+.++.++||||+..|.++..
T Consensus 87 ~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 139 (200)
T cd03217 87 PEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA 139 (200)
T ss_pred hhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 01111111222211112343333 34444444578899999999999988653
No 129
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.98 E-value=1.1e-05 Score=90.51 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=64.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------------HhHcCCeecCCCc---cc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------LAQVGADVPAEIF---EI 1067 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------------lAQiG~~VPA~~a---~l 1067 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- +.+.-.|||.... .+
T Consensus 21 ~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 21 CIFDNISLTV-PRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 4566777765 3578999999999999999999985530 1111235665432 12
Q ss_pred chhhhhh----------------------hccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHH
Q 001187 1068 SPVDRIF----------------------VRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1068 ~~~d~i~----------------------trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~D 1123 (1129)
++.+.+. .++|..+.+....++++..+++...| ..-+.++.++||||+..|-++.-
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 178 (269)
T PRK11831 100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178 (269)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 3334332 12222221222224454455443333 33467889999999999987653
No 130
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.98 E-value=1.2e-05 Score=88.70 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=63.4
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH---------------------HhHcCCeecCCCc---ccchh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------LAQVGADVPAEIF---EISPV 1070 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi---------------------lAQiG~~VPA~~a---~l~~~ 1070 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+.- -..+ .|||.... .+++.
T Consensus 16 ~l~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 16 AVNNLNLEI-AKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKI-GYVIQQIGLFPHMTVE 93 (242)
T ss_pred EeeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcce-EEEccCccccCCCcHH
Confidence 344555655 3578999999999999999999986520 0112 35655421 12333
Q ss_pred hhh---------------------hhccCccc--hHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DRI---------------------FVRMGAKD--HIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~i---------------------~trig~~d--~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+ +.++|... ......++++..+++ ++.+..-+.++.++||||+-.|-+...
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 170 (242)
T cd03295 94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT 170 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 333 23333332 222223445444444 343344578889999999999988754
No 131
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.98 E-value=1.4e-05 Score=90.76 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=30.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 53 ~il~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 53 EAVKKVNADI-LSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4667777776 45789999999999999999999864
No 132
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.97 E-value=1.7e-05 Score=84.72 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=60.3
Q ss_pred cccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------HhHcCCeecCCC---cccchhhhh-----
Q 001187 1019 ITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------LAQVGADVPAEI---FEISPVDRI----- 1073 (1129)
Q Consensus 1019 i~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------lAQiG~~VPA~~---a~l~~~d~i----- 1073 (1129)
+++.. ..+.+++|+||||+|||||||.++.+.- ...+ .|+|... ...++.+.|
T Consensus 19 vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~-~~~~~~~~~~~~~tv~~~l~~~~~ 96 (195)
T PRK13541 19 LSITF-LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYC-TYIGHNLGLKLEMTVFENLKFWSE 96 (195)
T ss_pred EEEEE-cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhE-EeccCCcCCCccCCHHHHHHHHHH
Confidence 55554 3467999999999999999999986520 0111 2344332 112233322
Q ss_pred -----------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1074 -----------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1074 -----------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.++|..+.+....+.++..+++ ++.+..-+.++.++||||+-.|-++.-
T Consensus 97 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~ 158 (195)
T PRK13541 97 IYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN 158 (195)
T ss_pred hcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 22333333233333445444444 444444578899999999999987643
No 133
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.97 E-value=1.3e-05 Score=88.28 Aligned_cols=108 Identities=18% Similarity=0.262 Sum_probs=64.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------------HhHcCCeecCCCc---cc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------LAQVGADVPAEIF---EI 1067 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------------lAQiG~~VPA~~a---~l 1067 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- -.++ .|||.... .+
T Consensus 15 ~il~~~s~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~ 92 (240)
T PRK09493 15 QVLHNIDLNI-DQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA-GMVFQQFYLFPHL 92 (240)
T ss_pred EEeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce-EEEecccccCCCC
Confidence 3556666665 3578999999999999999999986530 0112 35554421 12
Q ss_pred chhhhh----------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1068 SPVDRI----------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1068 ~~~d~i----------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
++.+.+ ..++|..+.+....+.++..+++ ++.+..-+.++.++||||+-.|-+..-
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 171 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 333322 22233322222233445444444 333334467889999999999988754
No 134
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=1.6e-05 Score=85.82 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=60.8
Q ss_pred ccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------H------------hHcCCeecCCCc---ccchhhhhh-
Q 001187 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------L------------AQVGADVPAEIF---EISPVDRIF- 1074 (1129)
Q Consensus 1018 di~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------l------------AQiG~~VPA~~a---~l~~~d~i~- 1074 (1129)
|+++.. ..+.+++|+||||+|||||||.++.+.- + .++ .|||.+.. .+++.+.+.
T Consensus 16 ~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTF-AQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV-SMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccE-EEEecccccCCCCcHHHHHhc
Confidence 566655 3578999999999999999999985531 0 012 25555432 123334432
Q ss_pred --------------------hccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1075 --------------------VRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1075 --------------------trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
.++|..+.+..-..+++..+++ ++.+..-+.++.++||||+..|-++..-
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~ 164 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 1122211111112344444444 3333334688999999999999887643
No 135
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.97 E-value=1.4e-05 Score=89.49 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=59.9
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcC--------CeecCCC---cccchhhhh----------
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPAEI---FEISPVDRI---------- 1073 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG--------~~VPA~~---a~l~~~d~i---------- 1073 (1129)
+-+++++.. ..+.+++|+||||+||||||+.++.+.-. .-| .+++... ..+++.+.+
T Consensus 39 il~~is~~i-~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~ 116 (264)
T PRK13546 39 ALDDISLKA-YEGDVIGLVGINGSGKSTLSNIIGGSLSP-TVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFK 116 (264)
T ss_pred EEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCC
Confidence 445666665 35789999999999999999999854311 111 0111111 112333332
Q ss_pred -----------hhccCccchHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 001187 1074 -----------FVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1074 -----------~trig~~d~i~~g~StF~~-em~e~~~il~~at~~sLvllDElGRGTst~ 1122 (1129)
+..++..+.+.....+++. +.++++.+...+.++.++||||+-.|-++.
T Consensus 117 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~ 177 (264)
T PRK13546 117 RKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT 177 (264)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 1111222222222233433 334444445557789999999999999864
No 136
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.97 E-value=1.9e-05 Score=85.70 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=64.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------HhHcCCeecCCCcc--cchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE--ISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lAQiG~~VPA~~a~--l~~~d 1071 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- ..+.-.|||.+... .++.+
T Consensus 18 ~~l~~i~~~i-~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 96 (220)
T cd03245 18 PALDNVSLTI-RAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD 96 (220)
T ss_pred ccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHH
Confidence 3556666665 3578999999999999999999986531 01112366665321 12333
Q ss_pred hh---------------hhccCccchHhh-----------cccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1072 RI---------------FVRMGAKDHIMA-----------GQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1072 ~i---------------~trig~~d~i~~-----------g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
.+ +.++|..+.+.. ....++..+++ ++.+..-+.++.|+||||+..|-+...-
T Consensus 97 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 176 (220)
T cd03245 97 NITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176 (220)
T ss_pred HhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 32 122222221111 01244444444 3333335688999999999999887654
Q ss_pred H
Q 001187 1125 Q 1125 (1129)
Q Consensus 1125 ~ 1125 (1129)
.
T Consensus 177 ~ 177 (220)
T cd03245 177 E 177 (220)
T ss_pred H
Confidence 3
No 137
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.96 E-value=1.3e-05 Score=89.79 Aligned_cols=109 Identities=19% Similarity=0.219 Sum_probs=65.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH---------------------HhHcCCeecCCCc---ccch
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------LAQVGADVPAEIF---EISP 1069 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi---------------------lAQiG~~VPA~~a---~l~~ 1069 (1129)
.+-++++|.. ..+.+++|+||||+|||||||.++.+.- -..+ .|||.+.. .+.+
T Consensus 21 ~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i-~~v~q~~~~~~~~tv 98 (265)
T PRK10253 21 TVAENLTVEI-PDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI-GLLAQNATTPGDITV 98 (265)
T ss_pred EEeeecceEE-CCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe-EEeeccCcCCCCCcH
Confidence 4667777776 3578999999999999999999986530 0122 25665432 1233
Q ss_pred hhhhh-------------------------hccCccchHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1070 VDRIF-------------------------VRMGAKDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1070 ~d~i~-------------------------trig~~d~i~~g~StF~~em~-e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+.+. .++|..+.+....+.++..++ +++.+..-+.++.++||||+..|-+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~ 178 (265)
T PRK10253 99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 33332 112222112222233433333 3444444578899999999999988764
Q ss_pred H
Q 001187 1124 G 1124 (1129)
Q Consensus 1124 G 1124 (1129)
-
T Consensus 179 ~ 179 (265)
T PRK10253 179 Q 179 (265)
T ss_pred H
Confidence 3
No 138
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.96 E-value=1.1e-05 Score=92.58 Aligned_cols=111 Identities=24% Similarity=0.366 Sum_probs=72.8
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCC--------
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE-------- 1063 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~-------- 1063 (1129)
+.|+|++.++-+ + +..+-+|++|.. ..+.++.|.||+|+||||+||+|| |+.-|..
T Consensus 4 ~~l~i~~v~k~y------g-~~~av~~isl~i-~~Gef~~lLGPSGcGKTTlLR~IA--------Gfe~p~~G~I~l~G~ 67 (352)
T COG3842 4 PALEIRNVSKSF------G-DFTAVDDISLDI-KKGEFVTLLGPSGCGKTTLLRMIA--------GFEQPSSGEILLDGE 67 (352)
T ss_pred ceEEEEeeeeec------C-CeeEEecceeee-cCCcEEEEECCCCCCHHHHHHHHh--------CCCCCCCceEEECCE
Confidence 356676644322 2 357788899887 467899999999999999999999 6654433
Q ss_pred --------Ccccchhh---hhhhccCccchHhhccc-------c----hHHHH----------------------HHHHH
Q 001187 1064 --------IFEISPVD---RIFVRMGAKDHIMAGQS-------T----FLTEL----------------------SETAL 1099 (1129)
Q Consensus 1064 --------~a~l~~~d---~i~trig~~d~i~~g~S-------t----F~~em----------------------~e~~~ 1099 (1129)
.-.++.+= .+|-+|...||+.-|+. . ...|| +++|.
T Consensus 68 ~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 68 DITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred ECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHH
Confidence 22233221 26777777788776654 0 11122 22444
Q ss_pred HHHhCCCCcEEEEeCCCCC
Q 001187 1100 MLSSATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1100 il~~at~~sLvllDElGRG 1118 (1129)
+-.-+.++.++||||.-..
T Consensus 148 ARAL~~~P~vLLLDEPlSa 166 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSA 166 (352)
T ss_pred HHHhhcCcchhhhcCcccc
Confidence 4445789999999997643
No 139
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=1.2e-05 Score=91.31 Aligned_cols=108 Identities=20% Similarity=0.183 Sum_probs=67.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-----------------------HHhHcCCeecCCC----cc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-----------------------ILAQVGADVPAEI----FE 1066 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-----------------------ilAQiG~~VPA~~----a~ 1066 (1129)
.+-+|+++.. ..+.+++|.||||+|||||||.++.+. +..++ .|||... ..
T Consensus 21 ~~l~~vs~~i-~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~i-g~v~q~~~~~~~~ 98 (287)
T PRK13637 21 KALDNVNIEI-EDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKV-GLVFQYPEYQLFE 98 (287)
T ss_pred ceeeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhce-EEEecCchhcccc
Confidence 4666777776 357899999999999999999998542 11233 3677652 12
Q ss_pred cchhhhh---------------------hhccCcc--chHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChH
Q 001187 1067 ISPVDRI---------------------FVRMGAK--DHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1067 l~~~d~i---------------------~trig~~--d~i~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~ 1122 (1129)
.++.+.| +.++|.. +......+.++..+++...|. .-+.++.++||||+..|.+..
T Consensus 99 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~ 178 (287)
T PRK13637 99 ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178 (287)
T ss_pred ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHH
Confidence 2333333 2333432 112222345555555543333 347889999999999999875
Q ss_pred H
Q 001187 1123 D 1123 (1129)
Q Consensus 1123 D 1123 (1129)
-
T Consensus 179 ~ 179 (287)
T PRK13637 179 G 179 (287)
T ss_pred H
Confidence 4
No 140
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=1.4e-05 Score=90.65 Aligned_cols=108 Identities=22% Similarity=0.224 Sum_probs=66.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H-----------H-hHcCCeecCCC----
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I-----------L-AQVGADVPAEI---- 1064 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i-----------l-AQiG~~VPA~~---- 1064 (1129)
.+-+|+++.. ..+.+++|.||||+|||||||.++.+. + . ..+| |||...
T Consensus 21 ~~l~~vsl~i-~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig-~v~q~~~~~~ 98 (287)
T PRK13641 21 KGLDNISFEL-EEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVS-LVFQFPEAQL 98 (287)
T ss_pred cceeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceE-EEEeChhhhh
Confidence 3566777766 457899999999999999999998652 1 1 1233 566542
Q ss_pred cccchhhhhh---------------------hccCcc-chHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCCh
Q 001187 1065 FEISPVDRIF---------------------VRMGAK-DHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1065 a~l~~~d~i~---------------------trig~~-d~i~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst 1121 (1129)
..+++.+.|. .++|.. +......++++..+++...|. .-+.++.++||||+-.|-++
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~ 178 (287)
T PRK13641 99 FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178 (287)
T ss_pred ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence 1234444432 222332 112222345555555533333 34788999999999999987
Q ss_pred HH
Q 001187 1122 SD 1123 (1129)
Q Consensus 1122 ~D 1123 (1129)
..
T Consensus 179 ~~ 180 (287)
T PRK13641 179 EG 180 (287)
T ss_pred HH
Confidence 54
No 141
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.95 E-value=1.4e-05 Score=88.19 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=29.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++..
T Consensus 16 ~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 16 KALNDLSLYV-DPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EEeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3556677765 35789999999999999999999855
No 142
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.95 E-value=1.5e-05 Score=88.11 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=63.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------HhHcCCeecCCCcc--cchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIFE--ISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lAQiG~~VPA~~a~--l~~~d 1071 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- +.+.-.|||.+... .++.+
T Consensus 17 ~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (241)
T PRK14250 17 EILKDISVKF-EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKD 95 (241)
T ss_pred eeeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHH
Confidence 3556677765 3578999999999999999999985430 01111355554211 11111
Q ss_pred -----------------hhhhccCcc-chHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1072 -----------------RIFVRMGAK-DHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 -----------------~i~trig~~-d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.++.++|.. +........++..+++ ++.+..-+.++.++||||+-.|-+...
T Consensus 96 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 166 (241)
T PRK14250 96 NIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166 (241)
T ss_pred HHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 223334443 1222223344433333 444444578899999999999988753
No 143
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.95 E-value=1.2e-05 Score=87.39 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=27.9
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 15 ~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 15 ILFGVSLTV-PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EeeeeeEEE-cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 445566655 35789999999999999999998754
No 144
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.95 E-value=1.3e-05 Score=89.59 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=29.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 16 ~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 16 TLLDDVSLTL-RPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred eeeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3566777765 35789999999999999999999865
No 145
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.95 E-value=1.2e-05 Score=87.53 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=62.7
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcC-----------------CeecCCCc---ccchhhhh-
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG-----------------ADVPAEIF---EISPVDRI- 1073 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG-----------------~~VPA~~a---~l~~~d~i- 1073 (1129)
+-+++++.. ..+.+++|+||||+||||||+.++.+. -.+-| .|+|.... .+++.+.+
T Consensus 15 ~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~ 92 (223)
T TIGR03740 15 AVNNISLTV-PKNSVYGLLGPNGAGKSTLLKMITGIL-RPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLK 92 (223)
T ss_pred EEeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHH
Confidence 444555554 347899999999999999999998643 11112 14554321 12333333
Q ss_pred ----------------hhccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1074 ----------------FVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1074 ----------------~trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.++|..+.+......++..+ ++++.+..-+.++.++||||+-.|-+..-
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 93 VHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159 (223)
T ss_pred HHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence 222333322222223343333 33444444578899999999999988764
No 146
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=1.2e-05 Score=93.40 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=65.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH------------------------HhHcCCeecCCCc---c
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------------LAQVGADVPAEIF---E 1066 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi------------------------lAQiG~~VPA~~a---~ 1066 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+.- -.++| |||.+.. .
T Consensus 19 ~il~~vsl~i-~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig-~v~q~~~l~~~ 96 (343)
T PRK11153 19 HALNNVSLHI-PAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIG-MIFQHFNLLSS 96 (343)
T ss_pred EEEEeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEE-EEeCCCccCCC
Confidence 3556677765 3578999999999999999999986530 11233 5655432 1
Q ss_pred cchhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1067 ISPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1067 l~~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+++.+.| +.++|..+.+....++++..+++ ++.+..-+.++.++||||+..|-++.-
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~ 175 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 2333332 22233332222223445544444 333334578899999999999988754
No 147
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.94 E-value=2.2e-05 Score=87.12 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=29.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 17 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 17 HALKGISMEI-EEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred eEEeeeeEEE-eCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 3556667665 35789999999999999999999753
No 148
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=1.4e-05 Score=90.15 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=63.9
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HH-hHcCCeecCCC----cccc
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------IL-AQVGADVPAEI----FEIS 1068 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------il-AQiG~~VPA~~----a~l~ 1068 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+. .+ ..+ .|||... ...+
T Consensus 17 ~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i-~~v~q~~~~~~~~~t 94 (274)
T PRK13644 17 ALENINLVI-KKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV-GIVFQNPETQFVGRT 94 (274)
T ss_pred eeeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe-EEEEEChhhhcccch
Confidence 556677765 457899999999999999999998542 01 112 2455442 1123
Q ss_pred hhhhh---------------------hhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHH
Q 001187 1069 PVDRI---------------------FVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1069 ~~d~i---------------------~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+.| ..++|..+.+......++..+++...| ..-+.++.++||||+-.|-++.-
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~ 171 (274)
T PRK13644 95 VEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 33332 112222222222233454444443333 33578999999999999988753
No 149
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=1.3e-05 Score=90.48 Aligned_cols=112 Identities=15% Similarity=0.160 Sum_probs=67.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH---------------------HhHcCCeecCCCc-c---cc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------LAQVGADVPAEIF-E---IS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi---------------------lAQiG~~VPA~~a-~---l~ 1068 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- +.+.-.|||.+.. . ..
T Consensus 24 ~vl~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 102 (280)
T PRK13633 24 LALDDVNLEV-KKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI 102 (280)
T ss_pred ceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence 4677777776 3578999999999999999999985521 1111235665421 1 11
Q ss_pred hhhh---------------------hhhccCccchHhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChHHHHh
Q 001187 1069 PVDR---------------------IFVRMGAKDHIMAGQSTFLTELSET-ALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1129)
Q Consensus 1069 ~~d~---------------------i~trig~~d~i~~g~StF~~em~e~-~~il~~at~~sLvllDElGRGTst~DG~A 1126 (1129)
+.+. ++.++|..+.+.....+++..+++. +.+..-+.++.|+||||+..|-+...-..
T Consensus 103 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 182 (280)
T PRK13633 103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182 (280)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 2222 2233343333333334454444443 33333478889999999999998765443
No 150
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.93 E-value=1.5e-05 Score=88.50 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=63.7
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------HhHcCCeecCCCc---ccchhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF---EISPVD 1071 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lAQiG~~VPA~~a---~l~~~d 1071 (1129)
+-+|++|.. ..+.+++|+||||+|||||||.++.+.- ..++ .|||.+.. .+++.+
T Consensus 11 ~l~~vsl~i-~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i-~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEV-RAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHR-AYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhhe-EEecccCccCCCccHHH
Confidence 345666665 3578999999999999999999885420 1122 25665421 122222
Q ss_pred --------------------hhhhccCccchHhhcccchHHHHHHHHHHHHh-CC-------CCcEEEEeCCCCCCChHH
Q 001187 1072 --------------------RIFVRMGAKDHIMAGQSTFLTELSETALMLSS-AT-------RNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 --------------------~i~trig~~d~i~~g~StF~~em~e~~~il~~-at-------~~sLvllDElGRGTst~D 1123 (1129)
.++.++|..+.+.....+++..+++...|.+. +. ++.++||||+-.|.+...
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~ 168 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence 23333343333333334555555554443332 22 458999999999998764
Q ss_pred H
Q 001187 1124 G 1124 (1129)
Q Consensus 1124 G 1124 (1129)
-
T Consensus 169 ~ 169 (248)
T PRK03695 169 Q 169 (248)
T ss_pred H
Confidence 3
No 151
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=1.9e-05 Score=84.80 Aligned_cols=106 Identities=18% Similarity=0.130 Sum_probs=58.3
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH--hHcC--------------------CeecCCCc---ccch
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--AQVG--------------------ADVPAEIF---EISP 1069 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil--AQiG--------------------~~VPA~~a---~l~~ 1069 (1129)
+-.++++.. ..+.+++|+||||+||||||+.++.+.-. ..-| .|||.+.. .+++
T Consensus 22 il~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 100 (202)
T cd03233 22 ILKDFSGVV-KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTV 100 (202)
T ss_pred eeeeEEEEE-CCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcH
Confidence 444555554 35789999999999999999999855320 1112 12232211 1222
Q ss_pred hhhhhhccCccchHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1070 VDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1070 ~d~i~trig~~d~i~~g~StF~-~em~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+.|....... .......+. .|.++++.+..-+.++.++||||.-.|.++.-
T Consensus 101 ~~~l~~~~~~~--~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~ 153 (202)
T cd03233 101 RETLDFALRCK--GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153 (202)
T ss_pred HHHHhhhhhhc--cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHH
Confidence 23221100000 011112333 33444444445578889999999999988653
No 152
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=97.93 E-value=3.9e-06 Score=90.86 Aligned_cols=61 Identities=21% Similarity=0.395 Sum_probs=51.6
Q ss_pred ccccCcccccceEEEecCCCCceEeEEEEe-eeCCCCeEEEEccCCc----hhhhccC---cceEEEEe
Q 001187 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKS-FDKECNKHLVQYDDGE----DELLDLG---KEKIEWVQ 158 (1129)
Q Consensus 98 ~~~~~~~~vg~rv~v~Wp~d~~~y~g~v~~-~~~~~~~h~v~Yddgd----~e~l~l~---~e~~~~~~ 158 (1129)
.....+++||++|..-||+++.||++.|+. |.....+|.+.||.-+ ++|++|. +|+|+|..
T Consensus 153 ~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g 221 (273)
T KOG4675|consen 153 GNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEG 221 (273)
T ss_pred ccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccC
Confidence 445567799999999999999999999999 5556678899998776 8888877 88999985
No 153
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=1.6e-05 Score=89.38 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=65.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCc-c---cc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIF-E---IS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a-~---l~ 1068 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+. +..++| |||.... . ..
T Consensus 23 ~~l~~isl~i-~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~~ 100 (269)
T PRK13648 23 FTLKDVSFNI-PKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG-IVFQNPDNQFVGSI 100 (269)
T ss_pred cceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee-EEEeChHHhccccc
Confidence 3556777766 357899999999999999999998653 111232 5554421 1 11
Q ss_pred hhh---------------------hhhhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1069 PVD---------------------RIFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1069 ~~d---------------------~i~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
+.+ .+...+|..+.+......++..+++ ++.+..-+.++.|+||||+-.|-+...-.
T Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~ 179 (269)
T PRK13648 101 VKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179 (269)
T ss_pred HHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 111 1222333332222233344444444 44344457889999999999999876543
No 154
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.1e-05 Score=81.61 Aligned_cols=34 Identities=35% Similarity=0.495 Sum_probs=26.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
|-.-++.+. .+.++.||||||+|||||||.+|.+
T Consensus 18 f~~L~f~l~---~Ge~~~i~G~NG~GKTtLLRilaGL 51 (209)
T COG4133 18 FSDLSFTLN---AGEALQITGPNGAGKTTLLRILAGL 51 (209)
T ss_pred ecceeEEEc---CCCEEEEECCCCCcHHHHHHHHHcc
Confidence 334444443 3679999999999999999999943
No 155
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.93 E-value=1.5e-05 Score=89.70 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=28.2
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-.|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 16 il~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 16 ILRDLSLRI-EPGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred EEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445666655 35789999999999999999999754
No 156
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.93 E-value=1.9e-05 Score=87.49 Aligned_cols=95 Identities=29% Similarity=0.385 Sum_probs=62.1
Q ss_pred ccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecC-------------------CCcccchhh---hhhh
Q 001187 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA-------------------EIFEISPVD---RIFV 1075 (1129)
Q Consensus 1018 di~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA-------------------~~a~l~~~d---~i~t 1075 (1129)
||++.. ..+.++.|+||||+||||+||.|| |.--|. ....++.+= .+|-
T Consensus 20 di~l~i-~~Ge~vaLlGpSGaGKsTlLRiIA--------GLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 20 DISLDI-KSGELVALLGPSGAGKSTLLRIIA--------GLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cceeee-cCCcEEEEECCCCCcHHHHHHHHh--------CcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 677766 357899999999999999999999 443333 222333321 2566
Q ss_pred ccCccchHhhccc------------chHHHH----------------------HHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 001187 1076 RMGAKDHIMAGQS------------TFLTEL----------------------SETALMLSSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1076 rig~~d~i~~g~S------------tF~~em----------------------~e~~~il~~at~~sLvllDElGRGTst 1121 (1129)
+|...|||.-|.- +=..|+ +++|.+-..|.++.++||||..+.-++
T Consensus 91 HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa 170 (345)
T COG1118 91 HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 170 (345)
T ss_pred cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhH
Confidence 7777788777651 111111 223333344788999999999877654
No 157
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.92 E-value=1.4e-05 Score=97.86 Aligned_cols=109 Identities=21% Similarity=0.244 Sum_probs=66.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------HhHcC-CeecCCCc---ccch
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVG-ADVPAEIF---EISP 1069 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lAQiG-~~VPA~~a---~l~~ 1069 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+.- ....+ .|||.+.. .+++
T Consensus 25 ~il~~vsl~i-~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 103 (510)
T PRK15439 25 EVLKGIDFTL-HAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSV 103 (510)
T ss_pred eeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcH
Confidence 4567777776 4578999999999999999999985530 01111 15655431 1233
Q ss_pred hhhh-----------------hhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHH
Q 001187 1070 VDRI-----------------FVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1070 ~d~i-----------------~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~D 1123 (1129)
.+.+ +..+|..+......++++..+++...|.+ -+.++.++||||+..|-++.-
T Consensus 104 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~ 175 (510)
T PRK15439 104 KENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAE 175 (510)
T ss_pred HHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 3322 22333332222333455555555444333 478899999999999988754
No 158
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.92 E-value=1.3e-05 Score=93.37 Aligned_cols=107 Identities=22% Similarity=0.171 Sum_probs=62.7
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH------------------hHcCCeecCCCcc---cchhhhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIFE---ISPVDRI 1073 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil------------------AQiG~~VPA~~a~---l~~~d~i 1073 (1129)
+-+|+++.. ..+.+++|.||||+|||||||+|+.+.-- ..--.|||...+- +++.+.|
T Consensus 19 ~l~~vs~~i-~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (353)
T TIGR03265 19 ALKDISLSV-KKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI 97 (353)
T ss_pred EEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHH
Confidence 556677765 35789999999999999999999965310 0001245544322 2222222
Q ss_pred ---------------------hhccCccchHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChH
Q 001187 1074 ---------------------FVRMGAKDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1074 ---------------------~trig~~d~i~~g~StF~~em~-e~~~il~~at~~sLvllDElGRGTst~ 1122 (1129)
..++|..+-+......++..++ +++.+..-+.++.++||||+..|-+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~ 168 (353)
T TIGR03265 98 AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168 (353)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 2222222222222233433333 344444457899999999999998764
No 159
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=1.5e-05 Score=90.48 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=65.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------------------HHhHcCCeecCCC----
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------------------ILAQVGADVPAEI---- 1064 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------------------ilAQiG~~VPA~~---- 1064 (1129)
.+-+|+++.. ..+.+++|.||||+|||||||.++.+. +..++| |||...
T Consensus 21 ~~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig-~v~q~~~~~l 98 (286)
T PRK13646 21 QAIHDVNTEF-EQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIG-MVFQFPESQL 98 (286)
T ss_pred CceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheE-EEecChHhcc
Confidence 3666777776 357899999999999999999998653 111233 555542
Q ss_pred cccchhhhh---------------------hhccCcc-chHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCCh
Q 001187 1065 FEISPVDRI---------------------FVRMGAK-DHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1065 a~l~~~d~i---------------------~trig~~-d~i~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst 1121 (1129)
...++.+.| +.++|.. +.......+++..+++...|. .-+.++.++||||+-.|-+.
T Consensus 99 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~ 178 (286)
T PRK13646 99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178 (286)
T ss_pred chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 011222222 2233432 222223344544444433333 34678899999999999887
Q ss_pred HHH
Q 001187 1122 SDG 1124 (1129)
Q Consensus 1122 ~DG 1124 (1129)
..-
T Consensus 179 ~~~ 181 (286)
T PRK13646 179 QSK 181 (286)
T ss_pred HHH
Confidence 543
No 160
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=1.6e-05 Score=89.17 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=64.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH---------------------HhHcCCeecCCCc---ccch
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------LAQVGADVPAEIF---EISP 1069 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi---------------------lAQiG~~VPA~~a---~l~~ 1069 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+.- -.++ .|||.... .+++
T Consensus 25 ~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i-~~v~q~~~~~~~~tv 102 (265)
T PRK10575 25 TLLHPLSLTF-PAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV-AYLPQQLPAAEGMTV 102 (265)
T ss_pred EEEeeeeeEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe-EEeccCCCCCCCccH
Confidence 4566777765 3578999999999999999999985530 1123 25665421 1233
Q ss_pred hhhhh-------------------------hccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1070 VDRIF-------------------------VRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1070 ~d~i~-------------------------trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+.+. .++|..+.+..-...++..+ ++++.+..-+.++.++||||+..|-+..-
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 182 (265)
T PRK10575 103 RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 33332 22222211111123344333 33444444578999999999999987654
No 161
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.92 E-value=1.8e-05 Score=85.90 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=29.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
|-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 2 vl~~vs~~i-~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 2 VLDKTDFVM-GYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred eeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677766 45789999999999999999999855
No 162
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.91 E-value=2.9e-05 Score=88.93 Aligned_cols=52 Identities=23% Similarity=0.243 Sum_probs=37.2
Q ss_pred CCcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 991 ~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.|.|++...-+- +..+-+++++.. ..+.+++|+||||+||||||+.++.+
T Consensus 43 ~~~l~i~nl~~~~~-------~~~iL~~is~~i-~~Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 43 DAKLSVEDLDVYYG-------DDHALKGVSMDI-PEKSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred CceEEEEEEEEEeC-------CeeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34567766653221 124667777765 35789999999999999999999855
No 163
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.91 E-value=1.3e-05 Score=87.75 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=27.5
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+|+++.. ..+.+++|+||||+|||||||.++.+.
T Consensus 3 ~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 3 QDLNLSL-KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555655 357899999999999999999998653
No 164
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.91 E-value=1.6e-05 Score=92.81 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=67.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------H----h-HcCCeecCCCcc--
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------L----A-QVGADVPAEIFE-- 1066 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------l----A-QiG~~VPA~~a~-- 1066 (1129)
.+-+|++|.. ..+.+++|.||||+|||||||+++.+.- + . ++ .|||....-
T Consensus 7 ~~l~~vs~~i-~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i-~~v~Q~~~l~~ 84 (363)
T TIGR01186 7 KGVNDADLAI-AKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKI-GMVFQQFALFP 84 (363)
T ss_pred eeEEeeEEEE-cCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcE-EEEECCCcCCC
Confidence 3556777776 4678999999999999999999985530 1 1 23 366654322
Q ss_pred -cchhhhh---------------------hhccCccchHhhcccchHHHHHHHH-HHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1067 -ISPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSETA-LMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1067 -l~~~d~i---------------------~trig~~d~i~~g~StF~~em~e~~-~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+++.+.| +.++|..+.+...-+.++..+++-. .+..-+.++.++||||+..|-++.-
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~ 164 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLI 164 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 2333332 2333333333333445555555533 3333478899999999999988764
No 165
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=2.4e-05 Score=86.39 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=63.2
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH---------------------------HhHcCCeecCCCc--
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------------LAQVGADVPAEIF-- 1065 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi---------------------------lAQiG~~VPA~~a-- 1065 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+.- -.++ .|||....
T Consensus 17 il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i-~~~~q~~~~~ 94 (242)
T PRK11124 17 ALFDITLDC-PQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNV-GMVFQQYNLW 94 (242)
T ss_pred eEeeeeeEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhhe-EEEecCcccc
Confidence 455666665 3578999999999999999999985520 1123 35665432
Q ss_pred -ccchhhhhh----------------------hccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 001187 1066 -EISPVDRIF----------------------VRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1066 -~l~~~d~i~----------------------trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst 1121 (1129)
.+++.+.|. .++|..+.+......+...+ ++++.+..-+.+++|+||||+-.|-+.
T Consensus 95 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~ 174 (242)
T PRK11124 95 PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174 (242)
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCH
Confidence 223333331 12222221222223333333 334444445778999999999999887
Q ss_pred HH
Q 001187 1122 SD 1123 (1129)
Q Consensus 1122 ~D 1123 (1129)
.-
T Consensus 175 ~~ 176 (242)
T PRK11124 175 EI 176 (242)
T ss_pred HH
Confidence 53
No 166
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.90 E-value=1.7e-05 Score=93.82 Aligned_cols=108 Identities=22% Similarity=0.299 Sum_probs=66.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCC---cccch
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEI---FEISP 1069 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~---a~l~~ 1069 (1129)
.+-++++|.. ..+.+++|.||||+|||||||+++.+. +..+|| |||.+. ..+++
T Consensus 17 ~vL~~vs~~i-~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig-~v~q~~~l~~~~tv 94 (402)
T PRK09536 17 TVLDGVDLSV-REGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA-SVPQDTSLSFEFDV 94 (402)
T ss_pred EEEEeeEEEE-CCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE-EEccCCCCCCCCCH
Confidence 4566777776 467899999999999999999998653 112243 566553 22334
Q ss_pred hhhh-------------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1070 VDRI-------------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1070 ~d~i-------------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+.+ +.++|..+-.......++..+++ ++.+..-+.++.++||||+-.|-+..-
T Consensus 95 ~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~ 174 (402)
T PRK09536 95 RQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINH 174 (402)
T ss_pred HHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 4433 22223222222223344444444 333333478899999999999988753
No 167
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.90 E-value=1.7e-05 Score=89.43 Aligned_cols=108 Identities=23% Similarity=0.178 Sum_probs=64.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCC----cccc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEI----FEIS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~----a~l~ 1068 (1129)
.+-.|+++.. ..+.+++|+||||+|||||||.++.+. +..++ .|||... ...+
T Consensus 18 ~~l~~vsl~i-~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i-~~v~q~~~~~~~~~t 95 (277)
T PRK13652 18 EALNNINFIA-PRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV-GLVFQNPDDQIFSPT 95 (277)
T ss_pred ceeeEeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe-EEEecCccccccccc
Confidence 3556677765 357899999999999999999998552 12234 3566542 1223
Q ss_pred hhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1069 PVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1069 ~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+.+ +.++|..+.+......++..+++ ++.+..-+.++.++||||+-.|-+..-
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~ 172 (277)
T PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172 (277)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 33333 22223322222222334334433 333334478899999999999988653
No 168
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.90 E-value=2.3e-05 Score=85.26 Aligned_cols=107 Identities=21% Similarity=0.232 Sum_probs=63.3
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H-----------HhHcCCeecCCCc---cc
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I-----------LAQVGADVPAEIF---EI 1067 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i-----------lAQiG~~VPA~~a---~l 1067 (1129)
+-+|+++.. ..+.+++|+||||+|||||++.++... + -+++| |||.... .+
T Consensus 20 il~~vs~~i-~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~ 97 (220)
T TIGR02982 20 VLFDINLEI-NPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIG-YIFQAHNLLGFL 97 (220)
T ss_pred EEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheE-EEcCChhhcCCC
Confidence 556666665 357899999999999999999998542 1 12233 4554321 12
Q ss_pred chhh----------------------hhhhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1068 SPVD----------------------RIFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1068 ~~~d----------------------~i~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
++.+ .++.++|..+.+.....++...+++ ++.+..-+++++++||||+-.|-+..-
T Consensus 98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 176 (220)
T TIGR02982 98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176 (220)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 2222 2223333333233333344444443 333334478899999999999998754
No 169
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.90 E-value=2.5e-05 Score=86.48 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=28.5
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 16 ~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 16 ALKNINLDI-PKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred eecceeEEE-CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 455666665 35789999999999999999999744
No 170
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=1.4e-05 Score=87.88 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=29.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 19 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 19 QALHEVSLHI-NQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred eeeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4566667765 35789999999999999999999754
No 171
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.89 E-value=2.2e-05 Score=88.14 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=65.3
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------------HhHcCCeecCCCc----
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------LAQVGADVPAEIF---- 1065 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------------lAQiG~~VPA~~a---- 1065 (1129)
..+.+|+++.. ..+.+++|+||||+|||||||.++.+.- +.+.-.|||....
T Consensus 25 ~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (268)
T PRK10419 25 QTVLNNVSLSL-KSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN 103 (268)
T ss_pred eeeEeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence 35667788776 4578999999999999999999986530 0111224554421
Q ss_pred -ccchhh----------------------hhhhccCcc-chHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 001187 1066 -EISPVD----------------------RIFVRMGAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1066 -~l~~~d----------------------~i~trig~~-d~i~~g~StF~-~em~e~~~il~~at~~sLvllDElGRGTs 1120 (1129)
..++.+ .++.++|.. +.+......+. .|.++++.+..-+.++.++||||+-.|-+
T Consensus 104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD 183 (268)
T PRK10419 104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183 (268)
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 111122 223333332 12222223343 34444554455578999999999999988
Q ss_pred hH
Q 001187 1121 TS 1122 (1129)
Q Consensus 1121 t~ 1122 (1129)
..
T Consensus 184 ~~ 185 (268)
T PRK10419 184 LV 185 (268)
T ss_pred HH
Confidence 75
No 172
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.89 E-value=2.6e-05 Score=85.04 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=29.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 19 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 19 KALDDVSFSI-KKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred eeecCceeEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3556677765 35789999999999999999999854
No 173
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.89 E-value=2.1e-05 Score=85.31 Aligned_cols=111 Identities=17% Similarity=0.064 Sum_probs=65.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------HhHcCCeecCCCc---ccchhhhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------LAQVGADVPAEIF---EISPVDRI 1073 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------lAQiG~~VPA~~a---~l~~~d~i 1073 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+.- ..+.-.|+|.... .+++.+.+
T Consensus 25 ~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l 103 (214)
T PRK13543 25 PVFGPLDFHV-DAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENL 103 (214)
T ss_pred eeeecceEEE-CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHH
Confidence 3567777776 4578999999999999999999986520 0111125554321 12344433
Q ss_pred h------------------hccCccchHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1074 F------------------VRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1074 ~------------------trig~~d~i~~g~StF~~-em~e~~~il~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
. .++|..+.+......++. |.++++.+...+.++.++||||+..|.+...-.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (214)
T PRK13543 104 HFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGIT 174 (214)
T ss_pred HHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 1 112211111111123333 334455555557889999999999998876543
No 174
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.89 E-value=2e-05 Score=87.84 Aligned_cols=36 Identities=36% Similarity=0.481 Sum_probs=29.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.|+.+
T Consensus 15 ~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 15 LIVDGVDVTA-PPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred EEEeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4566677765 35789999999999999999999865
No 175
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=2.1e-05 Score=89.05 Aligned_cols=107 Identities=21% Similarity=0.195 Sum_probs=63.5
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH------------------------HhHcCCeecCCC----cc
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------------LAQVGADVPAEI----FE 1066 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi------------------------lAQiG~~VPA~~----a~ 1066 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+.- ..++| |||... ..
T Consensus 22 ~l~~v~l~i-~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig-~v~q~~~~~~~~ 99 (282)
T PRK13640 22 ALNDISFSI-PRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVG-IVFQNPDNQFVG 99 (282)
T ss_pred ceeeEEEEE-cCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheE-EEEECHHHhhcc
Confidence 555666665 3578999999999999999999986531 11233 555442 12
Q ss_pred cchhhhhh---------------------hccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1067 ISPVDRIF---------------------VRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1067 l~~~d~i~---------------------trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.++.+.|. .++|..+.+......++..+ ++++.+..-+.+++|+||||+-.|.+..-
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~ 178 (282)
T PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAG 178 (282)
T ss_pred CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 23334332 22222222222223343333 33444444578999999999999988764
No 176
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=2.6e-05 Score=85.57 Aligned_cols=104 Identities=18% Similarity=0.151 Sum_probs=60.4
Q ss_pred ccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------------------HhHcCCeecCCCc---ccchhhhhh-
Q 001187 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIF---EISPVDRIF- 1074 (1129)
Q Consensus 1018 di~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------------------lAQiG~~VPA~~a---~l~~~d~i~- 1074 (1129)
++++.. ..+.+++|+||||+|||||||.++.+.- ..++ .|||.... .+++.+.|.
T Consensus 17 ~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTV-ERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV-SMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccE-EEEecccccccCCcHHHHHhc
Confidence 556654 3578999999999999999999975531 0112 25565421 133344331
Q ss_pred --------------------hccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1075 --------------------VRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1075 --------------------trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.++|....+.....+++..+ ++++.+..-+.++.++||||+..|-+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~ 164 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11222111111122333333 33444444578899999999999988753
No 177
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.88 E-value=1.7e-05 Score=92.64 Aligned_cols=105 Identities=14% Similarity=0.054 Sum_probs=61.2
Q ss_pred ccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH------------------------HhHcCCeecCCCc---ccchh
Q 001187 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------------LAQVGADVPAEIF---EISPV 1070 (1129)
Q Consensus 1018 di~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi------------------------lAQiG~~VPA~~a---~l~~~ 1070 (1129)
|+++.. ..+.+++|+||||+|||||||.++.+.- ..+.-.|||.+.. .+++.
T Consensus 15 ~isl~i-~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTL-PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 566655 3468999999999999999999986531 0000124554422 12333
Q ss_pred hhh-------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DRI-------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~i-------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+ +.++|..+.+.....+++..+++ ++.+..-+.++.++||||+..|-+..-
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~ 166 (354)
T TIGR02142 94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPR 166 (354)
T ss_pred HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 332 22223222222223445544444 333333478889999999999988754
No 178
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.87 E-value=2.2e-05 Score=91.88 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=30.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||+|+.+
T Consensus 19 ~~l~~vsl~i-~~Ge~~~llGpsGsGKSTLLr~iaGl 54 (362)
T TIGR03258 19 TVLDDLSLEI-EAGELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred EEEeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667777776 35789999999999999999999943
No 179
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.87 E-value=2.7e-05 Score=85.62 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=29.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 16 ~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 16 VILDNISLRI-KPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred cceeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4556667665 35789999999999999999999854
No 180
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=2.4e-05 Score=91.16 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=36.6
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+.|.+++..+-.- +..+-+|+++.. ..+.+++|.||||+|||||||+|+.+
T Consensus 5 ~~l~~~~l~~~~~-------~~~~l~~isl~i-~~Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 5 NFVVLKNITKRFG-------SNTVIDNLNLTI-KQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred cEEEEEeEEEEEC-------CeEEEeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 3566665544221 124567777776 45789999999999999999999854
No 181
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.87 E-value=1.3e-05 Score=90.31 Aligned_cols=109 Identities=21% Similarity=0.156 Sum_probs=64.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H----Hh-HcCCeecCCCcc-----cchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I----LA-QVGADVPAEIFE-----ISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i----lA-QiG~~VPA~~a~-----l~~~ 1070 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+. + .. ++ .|||.+... ..+.
T Consensus 21 ~il~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i-~~v~q~~~~~~~~~~~~~ 98 (272)
T PRK15056 21 TALRDASFTV-PGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLV-AYVPQSEEVDWSFPVLVE 98 (272)
T ss_pred EEEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceE-EEeccccccccCCCcchh
Confidence 3556777765 357899999999999999999997552 1 01 13 356654210 0111
Q ss_pred h-------------------------hhhhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1071 D-------------------------RIFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1071 d-------------------------~i~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
+ .++.++|..+.+.....+++..+++ ++.+..-+.++.++||||+..|-+...-
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 178 (272)
T PRK15056 99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178 (272)
T ss_pred hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 1 1222333332222223344444444 3333344678899999999999887543
No 182
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.9e-05 Score=86.79 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=29.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 27 ~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 27 HALKNINLDI-AKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EEeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3566777765 35789999999999999999999865
No 183
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.87 E-value=2.2e-05 Score=87.25 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=29.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 17 ~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 17 KGCRDVSFDL-YPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred eEeecceEEE-eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3566777766 35789999999999999999998865
No 184
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.9e-05 Score=90.66 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=62.7
Q ss_pred ccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------------------------HhHcCCeecCCCcc---cch
Q 001187 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------------LAQVGADVPAEIFE---ISP 1069 (1129)
Q Consensus 1018 di~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------------------------lAQiG~~VPA~~a~---l~~ 1069 (1129)
|+++.. ..+.+++|+||||+|||||||.++.+.- -.++| |||.+... +++
T Consensus 16 ~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTL-PAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG-YVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE-EEcCCcccCCCCcH
Confidence 566655 3467999999999999999999985530 01122 45544321 222
Q ss_pred hhh---------------hhhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1070 VDR---------------IFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1070 ~d~---------------i~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+. ++.++|..+.+.....+++..+++ ++.+..-+.++.++||||+-.|-++.-
T Consensus 94 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~ 163 (352)
T PRK11144 94 RGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 222 333344443333333445444444 443344578899999999999988754
No 185
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=2.3e-05 Score=87.31 Aligned_cols=108 Identities=22% Similarity=0.213 Sum_probs=62.9
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H-------HhHcCCeecCCCc---ccchhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I-------LAQVGADVPAEIF---EISPVD 1071 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i-------lAQiG~~VPA~~a---~l~~~d 1071 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+. + +.+.-.|||.+.. .+++.|
T Consensus 17 il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 95 (255)
T PRK11231 17 ILNDLSLSL-PTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRE 95 (255)
T ss_pred EEeeeeeEE-cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHH
Confidence 455666655 357899999999999999999998542 0 1111236666532 223444
Q ss_pred hhhh-------------------------ccCccchHhhcccchHHH-HHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1072 RIFV-------------------------RMGAKDHIMAGQSTFLTE-LSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 ~i~t-------------------------rig~~d~i~~g~StF~~e-m~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+.. ++|....+......++.. .++++.+..-+..++|+||||+..|-+..-
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (255)
T PRK11231 96 LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173 (255)
T ss_pred HHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 3321 111111111112233333 344444445578899999999999988653
No 186
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.87 E-value=2.5e-05 Score=87.49 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=31.5
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 24 ~~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 24 APVLTNVSLSI-EEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred eEEeeCceeEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35778888876 46789999999999999999999865
No 187
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=2.2e-05 Score=85.03 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=62.1
Q ss_pred ccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------------------------HhHcCCeecCCCc---ccch
Q 001187 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------------LAQVGADVPAEIF---EISP 1069 (1129)
Q Consensus 1018 di~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------------------------lAQiG~~VPA~~a---~l~~ 1069 (1129)
|++|.. .. .+++|+||||+|||||||.++.+.- -.++ .|||.+.. .+++
T Consensus 16 ~vsl~i-~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDL-NE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI-GLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEE-cc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE-EEEecCCccCCCCCH
Confidence 677766 45 8999999999999999999975421 0112 25554421 1233
Q ss_pred hhhh-------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1070 VDRI-------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1070 ~d~i-------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+.+ +.++|..+.+....++++..+++ ++.+..-+.+++++||||+-.|-+..-
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 166 (214)
T cd03297 93 RENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166 (214)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 3322 22333332222223444444444 444444578899999999999988754
No 188
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.86 E-value=2.9e-05 Score=87.20 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=30.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+.
T Consensus 34 ~il~~vsl~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 34 EAIKGIDMQF-EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred eeEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4667777776 457899999999999999999998654
No 189
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=2.5e-05 Score=88.23 Aligned_cols=107 Identities=19% Similarity=0.167 Sum_probs=63.9
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H-----------H-hHcCCeecCCC----c
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I-----------L-AQVGADVPAEI----F 1065 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i-----------l-AQiG~~VPA~~----a 1065 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+. + . .++ .|||... .
T Consensus 22 ~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i-~~~~q~~~~~~~ 99 (280)
T PRK13649 22 ALFDVNLTI-EDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKV-GLVFQFPESQLF 99 (280)
T ss_pred eeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhhe-EEEeeChhhhhc
Confidence 445666665 357899999999999999999998652 0 0 112 3666652 1
Q ss_pred ccchhhhhh---------------------hccCccc-hHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChH
Q 001187 1066 EISPVDRIF---------------------VRMGAKD-HIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1066 ~l~~~d~i~---------------------trig~~d-~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~ 1122 (1129)
..++.+.|. .++|..+ .+......++..+++ ++.+..-+.+++|+||||+-.|-++.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 179 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179 (280)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 123333321 2223321 112222344444444 44344457889999999999999876
Q ss_pred H
Q 001187 1123 D 1123 (1129)
Q Consensus 1123 D 1123 (1129)
.
T Consensus 180 ~ 180 (280)
T PRK13649 180 G 180 (280)
T ss_pred H
Confidence 4
No 190
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=3e-05 Score=85.09 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=63.3
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH-------------------hHcCCeecCCCcc---cchhhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-------------------AQVGADVPAEIFE---ISPVDR 1072 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil-------------------AQiG~~VPA~~a~---l~~~d~ 1072 (1129)
+-+++.+.. ..+.+++|+||||+|||||||.++...-. ..+ .|||.+... +++.+.
T Consensus 15 il~~i~~~i-~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i-~~~~q~~~~~~~~t~~~n 92 (232)
T cd03300 15 ALDGVSLDI-KEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPV-NTVFQNYALFPHLTVFEN 92 (232)
T ss_pred eeccceEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcce-EEEecccccCCCCcHHHH
Confidence 555666655 35789999999999999999999855311 112 245544211 122222
Q ss_pred ---------------------hhhccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1073 ---------------------IFVRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1073 ---------------------i~trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
++.++|..+.+......+...+ ++++.+..-+.++.++||||+-.|.+..-
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~ 165 (232)
T cd03300 93 IAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKL 165 (232)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 2233333322222223443333 34444444578899999999999987653
No 191
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.86 E-value=2.4e-05 Score=95.54 Aligned_cols=108 Identities=16% Similarity=0.102 Sum_probs=68.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH---------------------HhHcCCeecCCCc--------
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------LAQVGADVPAEIF-------- 1065 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi---------------------lAQiG~~VPA~~a-------- 1065 (1129)
+-+|++|.. ..+.+++|+||||+|||||||.++.+.- ..++| |||....
T Consensus 18 il~~vsl~i-~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~~~ 95 (490)
T PRK10938 18 TLQLPSLTL-NAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS-DEWQRNNTDMLSPGE 95 (490)
T ss_pred ecccceEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc-eeccCcchhhcccch
Confidence 566777766 4578999999999999999999985430 01122 3443210
Q ss_pred ---ccch-------------hhhhhhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHHH
Q 001187 1066 ---EISP-------------VDRIFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1066 ---~l~~-------------~d~i~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~DG 1124 (1129)
.+.+ +..++.++|..+.+..-.++++..+++...|.+ -+.++.++||||+..|-++..-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 171 (490)
T PRK10938 96 DDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR 171 (490)
T ss_pred hhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence 0111 123444555544444445667666666444443 4678999999999999887543
No 192
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.86 E-value=2.2e-05 Score=84.90 Aligned_cols=100 Identities=24% Similarity=0.353 Sum_probs=63.6
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCC-----c--------------ccchhhhh
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-----F--------------EISPVDRI 1073 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~-----a--------------~l~~~d~i 1073 (1129)
.++-+||+|.. ..+..+.|.|+||+|||||||.|+ |.+-|-+. . .++-.+.|
T Consensus 40 ~~aL~disf~i-~~Ge~vGiiG~NGaGKSTLlklia--------Gi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi 110 (249)
T COG1134 40 FWALKDISFEI-YKGERVGIIGHNGAGKSTLLKLIA--------GIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENI 110 (249)
T ss_pred EEEecCceEEE-eCCCEEEEECCCCCcHHHHHHHHh--------CccCCCCceEEEcceEehhhhcccCCCcccchHHHH
Confidence 46778888876 467899999999999999999999 88877653 1 11112333
Q ss_pred hhc---cCc------------------cchHhhcccchHHHHH-HHHHHHHhCCCCcEEEEeCC-CCCCCh
Q 001187 1074 FVR---MGA------------------KDHIMAGQSTFLTELS-ETALMLSSATRNSLVVLDEL-GRGTST 1121 (1129)
Q Consensus 1074 ~tr---ig~------------------~d~i~~g~StF~~em~-e~~~il~~at~~sLvllDEl-GRGTst 1121 (1129)
+-+ +|- .|-+..-.-|++..|. +++..+..+.++..+||||. +-|...
T Consensus 111 ~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~ 181 (249)
T COG1134 111 YLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAA 181 (249)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHH
Confidence 221 111 1111122234445553 46677777889999999995 334443
No 193
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.86 E-value=3.6e-05 Score=85.52 Aligned_cols=36 Identities=31% Similarity=0.320 Sum_probs=30.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 20 ~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 20 QALHDISLEF-EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eeecceeEEE-eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4666777766 45789999999999999999999854
No 194
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.86 E-value=2.1e-05 Score=87.76 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=30.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+++++.. ..+.+++|+||||+|||||||.++..
T Consensus 19 ~~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 19 EVLKGVSLQA-NAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred EEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4666777776 46789999999999999999999865
No 195
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.86 E-value=2.1e-05 Score=91.75 Aligned_cols=36 Identities=36% Similarity=0.480 Sum_probs=29.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|++|.. ..+.+++|.||||+|||||||+|+.+
T Consensus 16 ~~l~~isl~i-~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 16 QVLNDISLDI-PSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred EEEEEeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3566677765 35789999999999999999999865
No 196
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.85 E-value=1.9e-05 Score=88.71 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=30.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.
T Consensus 27 ~~l~~vsl~i-~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 27 EAVKPLSFTL-REGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred ceeeeeeEEe-cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3566777776 457899999999999999999998653
No 197
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=2.8e-05 Score=86.83 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=29.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 26 ~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 26 QALKNVSMQI-PKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred eeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4566777766 35789999999999999999999854
No 198
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.85 E-value=2.2e-05 Score=92.21 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=70.1
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH------------------
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------ 1053 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil------------------ 1053 (1129)
+.|.+++.+.-+- +..+-+|++|.. ..+.+++|.||||+|||||||+|+.+.-.
T Consensus 13 ~~L~l~~l~~~~~-------~~~~l~~vsl~i-~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 13 PLVELRGISKSFD-------GKEVISNLDLTI-NNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE 84 (375)
T ss_pred ceEEEEEEEEEEC-------CeEEEeeeEEEE-eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 4567766654321 123556677765 35789999999999999999999954310
Q ss_pred -hHcCCeecCCCc---ccchhhhhh---------------------hccCccchHhhcccchHH-HHHHHHHHHHhCCCC
Q 001187 1054 -AQVGADVPAEIF---EISPVDRIF---------------------VRMGAKDHIMAGQSTFLT-ELSETALMLSSATRN 1107 (1129)
Q Consensus 1054 -AQiG~~VPA~~a---~l~~~d~i~---------------------trig~~d~i~~g~StF~~-em~e~~~il~~at~~ 1107 (1129)
-.+ .||+...+ .+++.+.|- ..+|..+.+...-.+++. |.++++.+..-+.++
T Consensus 85 ~r~i-g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P 163 (375)
T PRK09452 85 NRHV-NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 163 (375)
T ss_pred HCCE-EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 011 13444432 223333332 112222212222233333 334444444457889
Q ss_pred cEEEEeCCCCCCChH
Q 001187 1108 SLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1108 sLvllDElGRGTst~ 1122 (1129)
+++||||+..|-+..
T Consensus 164 ~llLLDEP~s~LD~~ 178 (375)
T PRK09452 164 KVLLLDESLSALDYK 178 (375)
T ss_pred CEEEEeCCCCcCCHH
Confidence 999999999998764
No 199
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=1.8e-05 Score=84.53 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=30.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
-|-.++.|.. ..+.+++|.||||+|||||.+.|+.
T Consensus 18 eILkgvnL~v-~~GEvhaiMGPNGsGKSTLa~~i~G 52 (251)
T COG0396 18 EILKGVNLTV-KEGEVHAIMGPNGSGKSTLAYTIMG 52 (251)
T ss_pred hhhcCcceeE-cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5777888876 4678999999999999999998864
No 200
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.85 E-value=2.7e-05 Score=88.18 Aligned_cols=109 Identities=19% Similarity=0.164 Sum_probs=65.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-----------------------HHhHcCCeecCCC----cc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-----------------------ILAQVGADVPAEI----FE 1066 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-----------------------ilAQiG~~VPA~~----a~ 1066 (1129)
.+-+++++.. ..+.+++|.||||+|||||||.++.+. +-.++| |||... ..
T Consensus 20 ~~l~~vs~~i-~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig-~v~q~~~~~~~~ 97 (283)
T PRK13636 20 HALKGININI-KKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVG-MVFQDPDNQLFS 97 (283)
T ss_pred eeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEE-EEecCcchhhcc
Confidence 3566777766 357899999999999999999998653 112233 666653 12
Q ss_pred cchhhhh---------------------hhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1067 ISPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1067 l~~~d~i---------------------~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~DG 1124 (1129)
.++.+.| +.++|..+........++..+++-..| ..-+.++.++||||+-.|-+...-
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~ 177 (283)
T PRK13636 98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177 (283)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 2333333 222222222222233444444443333 334688899999999999876543
No 201
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=2.9e-05 Score=85.14 Aligned_cols=37 Identities=30% Similarity=0.309 Sum_probs=29.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+.
T Consensus 16 ~~l~~i~~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 16 PVLRDISLDI-PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cceeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3455666655 357899999999999999999998553
No 202
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.85 E-value=2.7e-05 Score=93.69 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=64.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCC--------eec---CCCcccchhhh----------
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA--------DVP---AEIFEISPVDR---------- 1072 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~--------~VP---A~~a~l~~~d~---------- 1072 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. ...-|. +++ .-...+++.+.
T Consensus 38 ~IL~nVSfsI-~~GEivgIiGpNGSGKSTLLkiLaGLl-~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~ 115 (549)
T PRK13545 38 YALNNISFEV-PEGEIVGIIGLNGSGKSTLSNLIAGVT-MPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGL 115 (549)
T ss_pred eEEeeeEEEE-eCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCC
Confidence 4667777776 457899999999999999999998543 111121 000 00011222222
Q ss_pred -----------hhhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1073 -----------IFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1073 -----------i~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
++.++|..+.+.....+++..+++ ++.+...+..+.++||||+-.|-+..-
T Consensus 116 ~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~s 178 (549)
T PRK13545 116 TKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTF 178 (549)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 222233333333334455555544 334444577899999999999988753
No 203
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=3.2e-05 Score=84.52 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=29.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 17 ~~l~~isl~i-~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 17 PVLKDINFSI-KPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred ccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3555666665 35789999999999999999999854
No 204
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=2.4e-05 Score=92.54 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=66.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------H-----hHcCCeecCCCcc---
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------L-----AQVGADVPAEIFE--- 1066 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------l-----AQiG~~VPA~~a~--- 1066 (1129)
+-++++|.. ..+.+++|+||||+|||||||.++.+.- + .++| |||....-
T Consensus 43 ~L~~isl~i-~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ig-yv~Q~~~l~~~ 120 (400)
T PRK10070 43 GVKDASLAI-EEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIA-MVFQSFALMPH 120 (400)
T ss_pred EEEeEEEEE-cCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEE-EEECCCcCCCC
Confidence 456677765 3578999999999999999999986530 0 1233 66654321
Q ss_pred cchhhhh---------------------hhccCccchHhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1067 ISPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSET-ALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1067 l~~~d~i---------------------~trig~~d~i~~g~StF~~em~e~-~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+++.+.| +..+|..+.+....+.++..+++- +.+..-+..+.++||||+..|-++.-
T Consensus 121 ~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~ 199 (400)
T PRK10070 121 MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI 199 (400)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 2333332 223333332223334455555443 33334578899999999999988754
No 205
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.83 E-value=3.8e-05 Score=85.11 Aligned_cols=36 Identities=28% Similarity=0.197 Sum_probs=28.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-.|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 16 ~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 16 QALFDINMQI-EQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred eeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3555666665 35789999999999999999999864
No 206
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.82 E-value=3.2e-05 Score=85.15 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=28.6
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 18 ~l~~i~~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 18 ILKGLSLTI-PPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred ceeceEEEe-cCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 455666655 35789999999999999999999865
No 207
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.82 E-value=3.9e-05 Score=85.53 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+++|+||||+|||||||.++.+
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999999844
No 208
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.82 E-value=3.2e-05 Score=86.13 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=28.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 18 il~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 18 LVHGVSLTL-QRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred eecceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444556655 35789999999999999999999865
No 209
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.82 E-value=3.4e-05 Score=82.99 Aligned_cols=114 Identities=17% Similarity=0.210 Sum_probs=69.8
Q ss_pred CcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH------------------------HHhHcCCeec--CCCc
Q 001187 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------------------------ILAQVGADVP--AEIF 1065 (1129)
Q Consensus 1012 ~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v------------------------ilAQiG~~VP--A~~a 1065 (1129)
...|-++++|.. .++++++|.||.|+||||+||+|+.+. +.-++|.-.- |=..
T Consensus 20 ~~~Ild~v~l~V-~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFs 98 (263)
T COG1127 20 DRVILDGVDLDV-PRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFS 98 (263)
T ss_pred CEEEecCceeee-cCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecccccc
Confidence 467888999987 578999999999999999999998332 1122221100 1112
Q ss_pred ccchhhhhhh------c----------------cCccch-HhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q 001187 1066 EISPVDRIFV------R----------------MGAKDH-IMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1066 ~l~~~d~i~t------r----------------ig~~d~-i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst 1121 (1129)
.++++|+|-. + +|...+ ...--|..+..|..-+.+.+ -|..+.|+++||...|-++
T Consensus 99 sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDP 178 (263)
T COG1127 99 SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP 178 (263)
T ss_pred ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCc
Confidence 2333333211 1 111111 11113556667776555554 4789999999999999988
Q ss_pred HHHHh
Q 001187 1122 SDGQA 1126 (1129)
Q Consensus 1122 ~DG~A 1126 (1129)
.--..
T Consensus 179 I~a~~ 183 (263)
T COG1127 179 ISAGV 183 (263)
T ss_pred chHHH
Confidence 65443
No 210
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=4e-05 Score=90.13 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=37.1
Q ss_pred cEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 993 ~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.|.+++.+.-+- +..+-+|++|.. ..+.+++|+||||+|||||||.|+.+.
T Consensus 19 ~l~l~~v~~~~~-------~~~~l~~vsl~i-~~Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 19 LLEIRNLTKSFD-------GQHAVDDVSLTI-YKGEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred eEEEEeEEEEEC-------CEEEEeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 466666554321 124667777776 357899999999999999999999553
No 211
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.81 E-value=4.8e-05 Score=85.37 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=30.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.
T Consensus 33 ~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 33 QALFDVDLDI-PEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEEEEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4667777776 357899999999999999999998654
No 212
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=3.1e-05 Score=87.47 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=66.1
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCC----cccch
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEI----FEISP 1069 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~----a~l~~ 1069 (1129)
+-+|++|.. ..+.+++|+||||+|||||||.++.+. +..++| |||... ...++
T Consensus 22 ~l~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~~~~~~~tv 99 (279)
T PRK13650 22 TLNDVSFHV-KQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIG-MVFQNPDNQFVGATV 99 (279)
T ss_pred eeeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhce-EEEcChHHhcccccH
Confidence 556677765 357899999999999999999998653 112233 566542 11233
Q ss_pred hhhhh---------------------hccCccchHhhcccchHHHH-HHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1070 VDRIF---------------------VRMGAKDHIMAGQSTFLTEL-SETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1070 ~d~i~---------------------trig~~d~i~~g~StF~~em-~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.+.|. .++|..+.+.....+++..+ ++++.+..-+.++.++||||+..|-+...
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~ 175 (279)
T PRK13650 100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175 (279)
T ss_pred HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 34332 22232222222334554444 44444444578999999999999988753
No 213
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.81 E-value=4.3e-05 Score=83.40 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=29.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 28 ~~l~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 28 LVLQDVSFTL-HPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred ccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3566777765 35789999999999999999999865
No 214
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=5e-05 Score=83.42 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=28.8
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+.
T Consensus 16 ~l~~i~~~i-~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 16 VLKDVSFTI-PAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred eeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455666655 357899999999999999999998653
No 215
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.81 E-value=2.9e-05 Score=84.83 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=28.4
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+.
T Consensus 22 ~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 22 ILNDVSLHV-ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cccCceEEE-cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 445556654 357899999999999999999998553
No 216
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.80 E-value=3.9e-05 Score=85.62 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=28.7
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 19 ~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 19 AVEDVNLNI-EPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred eeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 455666665 35789999999999999999999864
No 217
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=2.7e-05 Score=87.86 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=27.5
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-.+++|.. ..+.+++|.||||+|||||||.++.+
T Consensus 17 ~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~i~Gl 51 (275)
T PRK13639 17 ALKGINFKA-EKGEMVALLGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred eeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344555554 35789999999999999999999754
No 218
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.80 E-value=0.00036 Score=85.06 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=58.9
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhcc---------------
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRM--------------- 1077 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~tri--------------- 1077 (1129)
..+-.++++.. ..+.-++|+||||+|||||||.++-..- ...|...-.....++.||+-...+
T Consensus 335 ~~l~~~~s~~i-~~g~riaiiG~NG~GKSTLlk~l~g~~~-~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~ 412 (530)
T COG0488 335 RLLLKDLSFRI-DRGDRIAIVGPNGAGKSTLLKLLAGELG-PLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFP 412 (530)
T ss_pred ceeecCceEEe-cCCCEEEEECCCCCCHHHHHHHHhhhcc-cCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCc
Confidence 35666777765 3456799999999999999999842210 013433333333444444333222
Q ss_pred --------------Ccc-chHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 001187 1078 --------------GAK-DHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1078 --------------g~~-d~i~~g~StF~-~em~e~~~il~~at~~sLvllDElGRGTst 1121 (1129)
|-. +.+.+-..+++ .|-.++..+.-...++.|+||||+-.--+.
T Consensus 413 ~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi 472 (530)
T COG0488 413 DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDI 472 (530)
T ss_pred cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCH
Confidence 111 11111222332 233444444445678899999998654443
No 219
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.80 E-value=4.4e-05 Score=84.96 Aligned_cols=50 Identities=30% Similarity=0.234 Sum_probs=36.7
Q ss_pred cEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 993 ~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.|.+++..+-+- +..+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 7 ~l~~~~l~~~~~-------~~~il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 7 IIETENLNLFYT-------DFKALNNINIKI-LKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred eEEEeeeEEEeC-------CceeecceeeEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 466666654321 123567777776 45789999999999999999999854
No 220
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.79 E-value=3.7e-05 Score=87.17 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=30.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 53 ~il~~is~~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 53 QALDDVSMDI-PENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred eeEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4677777776 45789999999999999999999854
No 221
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.78 E-value=3.2e-05 Score=86.24 Aligned_cols=109 Identities=19% Similarity=0.134 Sum_probs=66.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------Hh------------HcCCeecCCC
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------LA------------QVGADVPAEI 1064 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------lA------------QiG~~VPA~~ 1064 (1129)
.+.+|+++.. ..+.+++|.||||+|||||||.++.+.- ++ +.-.|||...
T Consensus 20 ~il~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~ 98 (258)
T PRK11701 20 KGCRDVSFDL-YPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP 98 (258)
T ss_pred eeeeeeeEEE-eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence 4556666665 3578999999999999999999986520 11 1123666553
Q ss_pred c-----ccchhh----------------------hhhhccCccc-hHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCC
Q 001187 1065 F-----EISPVD----------------------RIFVRMGAKD-HIMAGQSTFLTELSE-TALMLSSATRNSLVVLDEL 1115 (1129)
Q Consensus 1065 a-----~l~~~d----------------------~i~trig~~d-~i~~g~StF~~em~e-~~~il~~at~~sLvllDEl 1115 (1129)
. .++..+ .++.++|..+ .+....++++..+++ ++.+..-+.++.++||||+
T Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEP 178 (258)
T PRK11701 99 RDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP 178 (258)
T ss_pred ccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 111111 1233344432 233334445444444 4444445789999999999
Q ss_pred CCCCChHH
Q 001187 1116 GRGTSTSD 1123 (1129)
Q Consensus 1116 GRGTst~D 1123 (1129)
..|.++.-
T Consensus 179 t~~LD~~~ 186 (258)
T PRK11701 179 TGGLDVSV 186 (258)
T ss_pred cccCCHHH
Confidence 99998754
No 222
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=4e-05 Score=87.69 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=29.5
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 22 ~l~~vsl~i-~~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 22 ALDNVSVEI-NQGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred ceeeeEEEE-eCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 566777766 45789999999999999999999855
No 223
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.78 E-value=1.4e-05 Score=83.15 Aligned_cols=112 Identities=24% Similarity=0.347 Sum_probs=74.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCe----ecCCCcccc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGAD----VPAEIFEIS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~----VPA~~a~l~ 1068 (1129)
.--||++|.. +.+.+-+|.||||+||||+|-.|+.-+ -.||+|.- -|.-.-.++
T Consensus 19 ~Aln~ls~~v-~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~lt 97 (249)
T COG4674 19 KALNDLSFSV-DPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLT 97 (249)
T ss_pred eeeeeeEEEe-cCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhcc
Confidence 4568888876 457899999999999999999886443 34666641 121111111
Q ss_pred h-----------------------------hhhhhhccCcc---chHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCC
Q 001187 1069 P-----------------------------VDRIFVRMGAK---DHIMAGQSTFLTELSETALMLSSATRNSLVVLDELG 1116 (1129)
Q Consensus 1069 ~-----------------------------~d~i~trig~~---d~i~~g~StF~~em~e~~~il~~at~~sLvllDElG 1116 (1129)
+ +|.++..+|.. +.+...+|.-...+.|+...+ +.++.|+|+||+-
T Consensus 98 V~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll--~Q~P~lLLlDEPv 175 (249)
T COG4674 98 VRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL--AQDPKLLLLDEPV 175 (249)
T ss_pred HHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee--ccCCcEEEecCcc
Confidence 1 23344434432 344455677777788888777 6788999999999
Q ss_pred CCCChHHHHhhh
Q 001187 1117 RGTSTSDGQAIA 1128 (1129)
Q Consensus 1117 RGTst~DG~AIA 1128 (1129)
.|-.-.+-...|
T Consensus 176 AGMTd~Et~~ta 187 (249)
T COG4674 176 AGMTDAETEKTA 187 (249)
T ss_pred CCCcHHHHHHHH
Confidence 998776655443
No 224
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.78 E-value=5.6e-05 Score=83.94 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=28.6
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+++++.. ..+.+++|+||||+|||||+|.++.+
T Consensus 20 ~l~~is~~i-~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 20 ILFDINLDI-YKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 455666665 35789999999999999999999865
No 225
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.77 E-value=7.4e-05 Score=79.30 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=70.1
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH----------------------HHhHcCCeecCCC---ccc
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV----------------------ILAQVGADVPAEI---FEI 1067 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v----------------------ilAQiG~~VPA~~---a~l 1067 (1129)
.-|-.+|++.. ..+.+++|.||.|||||||||++-.+- +-.++|+ |.... ..+
T Consensus 15 ~~VLkgi~l~v-~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm-VFQ~fnLFPHl 92 (240)
T COG1126 15 KEVLKGISLSV-EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM-VFQQFNLFPHL 92 (240)
T ss_pred eEEecCcceeE-cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe-ecccccccccc
Confidence 46778888877 568899999999999999999986543 1123342 32221 111
Q ss_pred chh----------------------hhhhhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChH
Q 001187 1068 SPV----------------------DRIFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1068 ~~~----------------------d~i~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~ 1122 (1129)
++. -.++.++|..|....--+..+...++-..|.+ -|.++.++|+||+-.--+|.
T Consensus 93 TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPE 170 (240)
T COG1126 93 TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE 170 (240)
T ss_pred hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHH
Confidence 111 12455666666555555566666666555544 48999999999997665553
No 226
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.77 E-value=2.1e-05 Score=95.92 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=30.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 274 ~il~~vsl~i-~~Ge~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 274 PILHNLSWQV-NPGEHWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred eEEeeceEEE-cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3667777776 45789999999999999999999853
No 227
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.77 E-value=6.2e-05 Score=83.70 Aligned_cols=36 Identities=39% Similarity=0.350 Sum_probs=30.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 20 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 20 HALYDITISI-PKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred eeeeeeEEEE-CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4667777776 45789999999999999999999853
No 228
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=3.5e-05 Score=94.41 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=67.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH------------------------hHcCCeecCCC---cc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEI---FE 1066 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil------------------------AQiG~~VPA~~---a~ 1066 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+.-- .++ .|||.+. ..
T Consensus 19 ~il~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i-~~v~q~~~~~~~ 96 (506)
T PRK13549 19 KALDNVSLKV-RAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI-AIIHQELALVKE 96 (506)
T ss_pred EeecceeEEE-eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe-EEEEeccccCCC
Confidence 4677888876 45789999999999999999999864320 012 2555432 12
Q ss_pred cchhhhh------------------------hhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCCh
Q 001187 1067 ISPVDRI------------------------FVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1067 l~~~d~i------------------------~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst 1121 (1129)
+++.+.| +.++|..+......++++..+++...| ..-+.++.++||||+..|-++
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 2333332 222332222222234555555553333 334788999999999999887
Q ss_pred HHHH
Q 001187 1122 SDGQ 1125 (1129)
Q Consensus 1122 ~DG~ 1125 (1129)
..-.
T Consensus 177 ~~~~ 180 (506)
T PRK13549 177 SETA 180 (506)
T ss_pred HHHH
Confidence 6543
No 229
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.75 E-value=6.5e-05 Score=81.90 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=28.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-.|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 22 ~il~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 22 PVLKNVSLTV-NAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EEEecceEEE-CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3455666665 35789999999999999999999854
No 230
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.75 E-value=3.5e-05 Score=94.36 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=66.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH---------------------H-hHcCCeecCCCc---ccc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------L-AQVGADVPAEIF---EIS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi---------------------l-AQiG~~VPA~~a---~l~ 1068 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+.- . .++| |||.+.. .++
T Consensus 18 ~~l~~is~~i-~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~t 95 (501)
T PRK10762 18 KALSGAALNV-YPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG-IIHQELNLIPQLT 95 (501)
T ss_pred EEeeeeeEEE-cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE-EEEcchhccCCCc
Confidence 4667777776 4578999999999999999999986530 0 1122 5554421 123
Q ss_pred hhhhh-------------------------hhccCccchHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChH
Q 001187 1069 PVDRI-------------------------FVRMGAKDHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1069 ~~d~i-------------------------~trig~~d~i~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~ 1122 (1129)
+.+.+ +.++|..+....-.++++..+++...|. .-+.++.|+||||+-.|-++.
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence 33322 2223332222222345555555544433 347889999999999998875
Q ss_pred HH
Q 001187 1123 DG 1124 (1129)
Q Consensus 1123 DG 1124 (1129)
--
T Consensus 176 ~~ 177 (501)
T PRK10762 176 ET 177 (501)
T ss_pred HH
Confidence 43
No 231
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.75 E-value=7.9e-05 Score=83.19 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=29.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 26 ~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 26 HALKNINLSI-PENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred eeEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4566777765 35789999999999999999999865
No 232
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.74 E-value=3.8e-05 Score=94.26 Aligned_cols=108 Identities=16% Similarity=0.215 Sum_probs=66.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------Hh--HcCCeecCCCc---ccc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LA--QVGADVPAEIF---EIS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lA--QiG~~VPA~~a---~l~ 1068 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+.- .. ++| |||.+.. .++
T Consensus 19 ~il~~vs~~i-~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~-~v~q~~~~~~~~t 96 (510)
T PRK09700 19 HALKSVNLTV-YPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG-IIYQELSVIDELT 96 (510)
T ss_pred EEeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE-EEeecccccCCCc
Confidence 3567778776 4578999999999999999999976530 11 233 5665421 223
Q ss_pred hhhhh----------------------------hhccCccchHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCC
Q 001187 1069 PVDRI----------------------------FVRMGAKDHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1069 ~~d~i----------------------------~trig~~d~i~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGT 1119 (1129)
+.+.+ +.++|..+....-.++++..+++...|. .-+..+.++||||+-.|-
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~L 176 (510)
T PRK09700 97 VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176 (510)
T ss_pred HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 33333 2222222222222345655555544443 347889999999999998
Q ss_pred ChHH
Q 001187 1120 STSD 1123 (1129)
Q Consensus 1120 st~D 1123 (1129)
+..-
T Consensus 177 D~~~ 180 (510)
T PRK09700 177 TNKE 180 (510)
T ss_pred CHHH
Confidence 8754
No 233
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.74 E-value=5.4e-05 Score=85.33 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=30.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+||||||+.++.+
T Consensus 34 ~~l~~vs~~i-~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 34 LALVDVHLKI-PAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred EEEeeeeeEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4667777776 45789999999999999999999843
No 234
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.74 E-value=5.1e-05 Score=95.42 Aligned_cols=36 Identities=28% Similarity=0.182 Sum_probs=29.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.|+..
T Consensus 15 ~~l~~vs~~i-~~Ge~v~LvG~NGsGKSTLLkiL~G~ 50 (638)
T PRK10636 15 VLLDNATATI-NPGQKVGLVGKNGCGKSTLLALLKNE 50 (638)
T ss_pred eeecCcEEEE-CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556777766 35789999999999999999999864
No 235
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.74 E-value=5.2e-05 Score=84.18 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=29.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+.
T Consensus 19 ~l~~~sl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 19 ALHGISLDF-EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eeeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 455666665 357899999999999999999998654
No 236
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.74 E-value=7.4e-05 Score=83.90 Aligned_cols=51 Identities=29% Similarity=0.345 Sum_probs=36.8
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+.|.+++...-+ . +..+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 20 ~~l~~~~l~~~~------~-~~~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 20 HILEVKDLSIYY------G-EKRAVNDISMDI-EKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred ceEEEEEEEEEe------C-CceeeeceEEEE-cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 456666654311 1 134667777776 45789999999999999999999864
No 237
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=5.7e-05 Score=85.29 Aligned_cols=110 Identities=16% Similarity=0.110 Sum_probs=64.2
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------HhHcCCeecCCC----cccchh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEI----FEISPV 1070 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lAQiG~~VPA~~----a~l~~~ 1070 (1129)
+-+|+++.. ..+.+++|+||||+||||||+.++.+.- +.+.-.|||... ...++.
T Consensus 22 ~l~~v~l~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 22 QLNGVSFSI-TKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 556676665 3578999999999999999999985430 111123566542 123444
Q ss_pred hhhh---------------------hccCccchHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1071 DRIF---------------------VRMGAKDHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1071 d~i~---------------------trig~~d~i~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
+.|. ..+|..+.......+++..+++...|. .-+.++.++||||+-.|.+...--
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~ 177 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 4442 111111111111233444444433333 346788999999999998876543
No 238
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=6.4e-05 Score=83.53 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=29.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 18 ~~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 18 HAVKDVSMDF-PENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred eEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4566777765 35789999999999999999999865
No 239
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.73 E-value=5.7e-05 Score=92.89 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=29.7
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+.
T Consensus 15 ~l~~is~~i-~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 15 VLKNISFTI-EEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 556677765 357899999999999999999998763
No 240
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=6.8e-05 Score=83.20 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=29.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 17 ~~l~~i~~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 17 KAVKNVTMKI-FKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred eeEeeeeEee-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3556677765 35789999999999999999999843
No 241
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=6.6e-05 Score=83.31 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=30.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+||||||+.++.+
T Consensus 17 ~~l~~is~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 17 EVLDGVNLEI-PDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred eeeecceeEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4566777766 35789999999999999999999865
No 242
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.73 E-value=6.9e-05 Score=83.22 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=29.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 19 ~~l~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 19 KALNSVSLDF-YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eeeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4556777765 35789999999999999999999743
No 243
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=3e-05 Score=88.04 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=29.3
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 26 il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 26 ALNNTSLTF-KKNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred eeeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 566777765 35789999999999999999999755
No 244
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.72 E-value=5.5e-05 Score=82.61 Aligned_cols=98 Identities=24% Similarity=0.276 Sum_probs=56.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHH----------------HhHcCCeecCCCc-----ccchhhhhh----------
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVI----------------LAQVGADVPAEIF-----EISPVDRIF---------- 1074 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vi----------------lAQiG~~VPA~~a-----~l~~~d~i~---------- 1074 (1129)
.+.+++|+||||+|||||||.++.+.- ..++ .|||.+.. .+++.+.+.
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i-~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHI-GYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcE-EEecccccccCCCCccHHHHHHhccccccccc
Confidence 367999999999999999999986531 1122 35554421 123333321
Q ss_pred ---------------hccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1075 ---------------VRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1075 ---------------trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
.++|..+.+......+...+++ ++.+..-+.++.++|+||+-.|-+...-
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1122221111112233333333 3444445789999999999999887643
No 245
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=7.2e-05 Score=83.16 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=30.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 18 ~~l~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 18 HVIKGVDLKI-PQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred eeeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4667777776 35789999999999999999999855
No 246
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.72 E-value=4e-05 Score=105.08 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=69.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc---ccchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a---~l~~~ 1070 (1129)
.+-+|++++. ..+.+++|.||||+||||+||+++.+. +..+|| |+|...+ .++..
T Consensus 1953 ~aL~~ISf~I-~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG-y~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1953 PAVDRLCVGV-RPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG-YCPQFDAIDDLLTGR 2030 (2272)
T ss_pred eEEEeeEEEE-cCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE-EEeccccCCCCCCHH
Confidence 5778888887 468899999999999999999998553 123454 5665532 22333
Q ss_pred hhh---------------------hhccCccchHhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DRI---------------------FVRMGAKDHIMAGQSTFLTELSET-ALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~i---------------------~trig~~d~i~~g~StF~~em~e~-~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+ +.++|..+....-..+++.++++- +.++.-+.+++++||||+-.|-++.-
T Consensus 2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~s 2105 (2272)
T TIGR01257 2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQA 2105 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 322 222332222222234555555553 33444578899999999999988753
No 247
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.71 E-value=7.8e-05 Score=88.96 Aligned_cols=99 Identities=23% Similarity=0.312 Sum_probs=64.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCC-----------------------------
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI----------------------------- 1064 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~----------------------------- 1064 (1129)
-.-++++|.. ..+.++.|.|-||+|||||||.++ |.|-|-+.
T Consensus 22 ~AL~~v~l~v-~~GEV~aL~GeNGAGKSTLmKiLs--------Gv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl 92 (500)
T COG1129 22 KALDGVSLTV-RPGEVHALLGENGAGKSTLMKILS--------GVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQEL 92 (500)
T ss_pred eeeccceeEE-eCceEEEEecCCCCCHHHHHHHHh--------CcccCCCceEEECCEEccCCCHHHHHhCCcEEEeech
Confidence 4556777766 468999999999999999999998 55544321
Q ss_pred ---cc----------------cchhhh---------hhhccCc---cchHhhcccchHHHHHHHHHHHHhCCCCcEEEEe
Q 001187 1065 ---FE----------------ISPVDR---------IFVRMGA---KDHIMAGQSTFLTELSETALMLSSATRNSLVVLD 1113 (1129)
Q Consensus 1065 ---a~----------------l~~~d~---------i~trig~---~d~i~~g~StF~~em~e~~~il~~at~~sLvllD 1113 (1129)
.. ++++|+ ++.++|. .+.....+|.-.-.|-|+++.|.. ...+||||
T Consensus 93 ~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~--~arllIlD 170 (500)
T COG1129 93 SLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF--DARVLILD 170 (500)
T ss_pred hccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc--CCCEEEEc
Confidence 11 223332 4455665 233344455555566666666653 45599999
Q ss_pred CCCCCCChHH
Q 001187 1114 ELGRGTSTSD 1123 (1129)
Q Consensus 1114 ElGRGTst~D 1123 (1129)
|+-..-+..+
T Consensus 171 EPTaaLt~~E 180 (500)
T COG1129 171 EPTAALTVKE 180 (500)
T ss_pred CCcccCCHHH
Confidence 9987766554
No 248
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=7.9e-05 Score=83.76 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=30.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+
T Consensus 27 ~il~~is~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 27 EAVKNVFCDI-PRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEEcceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4667777776 45789999999999999999999864
No 249
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=6.5e-05 Score=92.60 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=28.7
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|++|.. ..+.+++|+||||+|||||||.++.+
T Consensus 16 il~~vsl~i-~~Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 16 LFENISVKF-GGGNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred eEeCCEEEE-CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455666665 35789999999999999999999854
No 250
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=4.9e-05 Score=87.59 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=38.7
Q ss_pred CCcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 991 ~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.|.+++...-.-.. ...+..+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 19 ~~~l~~~nl~~~y~~~--~~~~~~~L~~vsl~i-~~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 19 DIILRVKNLYCVFDEK--QENELVALNNISYTF-EKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred CceEEEEeEEEEeCCC--CcccccceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457776665422110 000124777888876 46789999999999999999999854
No 251
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=9.6e-05 Score=82.54 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=29.1
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 22 il~~isl~i-~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 22 AIEGISMDI-YRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred eecceEEEE-cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 556677765 35789999999999999999999864
No 252
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=7.7e-05 Score=84.80 Aligned_cols=109 Identities=21% Similarity=0.190 Sum_probs=65.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------------------------HhHcCCeecCCC----
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------------LAQVGADVPAEI---- 1064 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------------------------lAQiG~~VPA~~---- 1064 (1129)
.+-+|+++.. ..+.+++|.||||+|||||||.++.+.- ...+| |||...
T Consensus 21 ~~L~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig-~v~q~~~~~l 98 (290)
T PRK13634 21 RALYDVNVSI-PSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVG-IVFQFPEHQL 98 (290)
T ss_pred cceeeEEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEE-EEeeCchhhh
Confidence 3566777776 4578999999999999999999986531 11233 566542
Q ss_pred cccchhhhh---------------------hhccCccch-HhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 001187 1065 FEISPVDRI---------------------FVRMGAKDH-IMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1065 a~l~~~d~i---------------------~trig~~d~-i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst 1121 (1129)
...++.+.| +.++|.... ......+++..+++ ++.+..-+.++.++||||+-.|-+.
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~ 178 (290)
T PRK13634 99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178 (290)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 112222222 223443322 22223444444444 3333334788999999999999987
Q ss_pred HHH
Q 001187 1122 SDG 1124 (1129)
Q Consensus 1122 ~DG 1124 (1129)
..-
T Consensus 179 ~~~ 181 (290)
T PRK13634 179 KGR 181 (290)
T ss_pred HHH
Confidence 643
No 253
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.69 E-value=5.3e-05 Score=87.68 Aligned_cols=108 Identities=15% Similarity=0.097 Sum_probs=65.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH------------------------HhHcCCeecCCCc----
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------------LAQVGADVPAEIF---- 1065 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi------------------------lAQiG~~VPA~~a---- 1065 (1129)
.+-+|++|.. ..+.+++|+|+||+|||||+|.|+.+.- -.++ .|||.+..
T Consensus 35 ~~l~~vsl~i-~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i-~~v~Q~~~~~l~ 112 (331)
T PRK15079 35 KAVDGVTLRL-YEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI-QMIFQDPLASLN 112 (331)
T ss_pred EEEeeEEEEE-cCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCce-EEEecCchhhcC
Confidence 4667888876 4678999999999999999999876530 0122 25665531
Q ss_pred -ccchhhhh-----------------------hhccCccch-HhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCC
Q 001187 1066 -EISPVDRI-----------------------FVRMGAKDH-IMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1066 -~l~~~d~i-----------------------~trig~~d~-i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGT 1119 (1129)
.+.+.+.| +.++|..+. +...-..++..|++-..| ..-+.++.|+|+||.-.|-
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 22333333 122232111 122223455555553333 3347899999999999998
Q ss_pred ChHH
Q 001187 1120 STSD 1123 (1129)
Q Consensus 1120 st~D 1123 (1129)
+..-
T Consensus 193 D~~~ 196 (331)
T PRK15079 193 DVSI 196 (331)
T ss_pred CHHH
Confidence 7653
No 254
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.69 E-value=0.00012 Score=82.57 Aligned_cols=111 Identities=17% Similarity=0.147 Sum_probs=67.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------------------HhHcCCeecCCCccc--chhhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIFEI--SPVDR 1072 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------------------lAQiG~~VPA~~a~l--~~~d~ 1072 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++-+.- +.+.-.|||.+..-+ ++.+.
T Consensus 18 ~~l~~isl~I-~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n 96 (275)
T cd03289 18 AVLENISFSI-SPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred cceeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence 4566777766 4578999999999999999999986631 111224667654211 22222
Q ss_pred h--------------hhccCccchHhh---c--------ccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHHHH
Q 001187 1073 I--------------FVRMGAKDHIMA---G--------QSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1073 i--------------~trig~~d~i~~---g--------~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~DG~ 1125 (1129)
+ ..++|..+.+.. + .+.|+..+++...+.+ -+..+.++||||.-.|-++..-.
T Consensus 97 l~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~ 175 (275)
T cd03289 97 LDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQ 175 (275)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHH
Confidence 2 123333322221 1 1235555555444433 36788999999999998876443
No 255
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=4.7e-05 Score=81.70 Aligned_cols=109 Identities=20% Similarity=0.253 Sum_probs=76.8
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH------------------------HHhHcCCe------ecC
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------------------------ILAQVGAD------VPA 1062 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v------------------------ilAQiG~~------VPA 1062 (1129)
..+-.||.+.. ..+.+++|.||+|+|||||||++.-++ +.+|||+- ||-
T Consensus 17 ~~aL~~Vnl~I-~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r 95 (258)
T COG3638 17 HQALKDVNLEI-NQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR 95 (258)
T ss_pred ceeeeeEeEEe-CCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccc
Confidence 45677788876 467899999999999999999987654 56888863 332
Q ss_pred CC-----------------cccchh---hh-----hhhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCC
Q 001187 1063 EI-----------------FEISPV---DR-----IFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELG 1116 (1129)
Q Consensus 1063 ~~-----------------a~l~~~---d~-----i~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElG 1116 (1129)
.+ .-+++| |+ .+.|+|..|....-.++.+..-++-..|.+ -+.+..++|-||+=
T Consensus 96 ~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv 175 (258)
T COG3638 96 LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV 175 (258)
T ss_pred cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence 21 112222 11 456788877777778888777666545544 36788999999997
Q ss_pred CCCChH
Q 001187 1117 RGTSTS 1122 (1129)
Q Consensus 1117 RGTst~ 1122 (1129)
..-++.
T Consensus 176 asLDp~ 181 (258)
T COG3638 176 ASLDPE 181 (258)
T ss_pred cccChh
Confidence 766653
No 256
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=97.68 E-value=4.7e-06 Score=100.97 Aligned_cols=128 Identities=9% Similarity=-0.142 Sum_probs=106.6
Q ss_pred eccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCC-Ccccchhhhhhh
Q 001187 997 KSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE-IFEISPVDRIFV 1075 (1129)
Q Consensus 997 ~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~-~a~l~~~d~i~t 1075 (1129)
.+.+||++.++. .-.+.++++.+-. +.+..-..||+||+|++|||+|||.+|-+++++|.||+. .++.+.-|..+
T Consensus 627 ~Qd~~~fIpNdv--~le~~~~~~~IiT-GpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~- 702 (902)
T KOG0219|consen 627 GQDEIPFIPNDV--VLEKGKCRMLIIT-GPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQL- 702 (902)
T ss_pred ccccCCCCCCcc--ccccCCceEEEEe-CCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhh-
Confidence 357899998642 2257899988743 223456799999999999999999999999999999987 46677777665
Q ss_pred ccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1076 rig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
+-++.+....+.++|+.++.....++.-.+-.+....+|.|+++++.++.-++
T Consensus 703 kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ 755 (902)
T KOG0219|consen 703 KGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIAT 755 (902)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHH
Confidence 45667888899999999999999999989999999999999999999987654
No 257
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.68 E-value=0.00013 Score=81.02 Aligned_cols=36 Identities=31% Similarity=0.266 Sum_probs=29.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 17 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 17 QALKSINLPI-PARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred eeeecceEEe-cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4566777766 35789999999999999999999864
No 258
>PRK13409 putative ATPase RIL; Provisional
Probab=97.67 E-value=0.00011 Score=91.33 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=64.6
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH------H------------H------------h--HcC-Ce
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------I------------L------------A--QVG-AD 1059 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v------i------------l------------A--QiG-~~ 1059 (1129)
.|+-.++. .. ..+.+++|.||||+||||+||.++.+. | + . ++. .+
T Consensus 87 ~~~L~~l~-~i-~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 87 GFKLYGLP-IP-KEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred ceeEecCC-cC-CCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 36666666 33 457899999999999999999997542 1 0 0 000 11
Q ss_pred ecCCCccc------------------chhhhhhhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCC
Q 001187 1060 VPAEIFEI------------------SPVDRIFVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1060 VPA~~a~l------------------~~~d~i~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTs 1120 (1129)
+|..-..+ ..++.++.++|....+....++++..+++...| ...+..+.++||||+-.|-+
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD 244 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 12110000 112334445555443344445555555443333 33467899999999999988
Q ss_pred hHHHH
Q 001187 1121 TSDGQ 1125 (1129)
Q Consensus 1121 t~DG~ 1125 (1129)
...-.
T Consensus 245 ~~~~~ 249 (590)
T PRK13409 245 IRQRL 249 (590)
T ss_pred HHHHH
Confidence 76543
No 259
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=9.6e-05 Score=83.43 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=31.0
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..+-+|++|.. ..+.+++|+||||+|||||||.++.+
T Consensus 34 ~~il~~vs~~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 34 KTVLDQVSMGF-PARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred EEEeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 35677888876 45789999999999999999999854
No 260
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=0.0011 Score=83.70 Aligned_cols=110 Identities=24% Similarity=0.236 Sum_probs=66.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------H---hHcCCeecCCC-ccc----chhh-------
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------L---AQVGADVPAEI-FEI----SPVD------- 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------l---AQiG~~VPA~~-a~l----~~~d------- 1071 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++...- + .++| |+|... ..+ .+++
T Consensus 326 ~il~~isl~i-~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-y~~Q~~~~~l~~~~~~~~~~~~~~~ 403 (638)
T PRK10636 326 IILDSIKLNL-VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG-YFAQHQLEFLRADESPLQHLARLAP 403 (638)
T ss_pred eeeccceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEE-EecCcchhhCCccchHHHHHHHhCc
Confidence 4667777776 4578999999999999999999985431 1 1233 445432 111 1222
Q ss_pred --------hhhhccCcc-chHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1072 --------RIFVRMGAK-DHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1072 --------~i~trig~~-d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
.++.++|-. +.+..-.++++..+++ ++.+..-+.++.|+||||+..|-+..--.
T Consensus 404 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~ 467 (638)
T PRK10636 404 QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 467 (638)
T ss_pred hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 122333332 1233334555555544 33333446788999999999998876433
No 261
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.67 E-value=7.9e-05 Score=82.74 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=30.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 21 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 21 EILKGLNLSI-NKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EeeecceeEE-cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4667777766 35789999999999999999999864
No 262
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.67 E-value=9.7e-05 Score=91.54 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=69.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------HHh---HcCCeecCCCc----ccchhhh-------
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------ILA---QVGADVPAEIF----EISPVDR------- 1072 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------ilA---QiG~~VPA~~a----~l~~~d~------- 1072 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. .+. .+| |||.+.. .+++.+.
T Consensus 336 ~~l~~isl~i-~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~-~v~q~~~~~~~~~tv~e~l~~~~~~ 413 (552)
T TIGR03719 336 LLIDDLSFKL-PPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLA-YVDQSRDALDPNKTVWEEISGGLDI 413 (552)
T ss_pred eeeccceEEE-cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEE-EEeCCccccCCCCcHHHHHHhhccc
Confidence 4677788876 467899999999999999999997542 111 122 5665421 1233332
Q ss_pred ------------hhhccCccc-hHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHHHHh
Q 001187 1073 ------------IFVRMGAKD-HIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSDGQA 1126 (1129)
Q Consensus 1073 ------------i~trig~~d-~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~DG~A 1126 (1129)
++.++|..+ ......++++..+++...| ..-+..+.++||||+..|-++.--..
T Consensus 414 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 481 (552)
T TIGR03719 414 IQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRA 481 (552)
T ss_pred cccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence 233344332 1223345666555553333 34578899999999999998765443
No 263
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.66 E-value=0.0001 Score=91.45 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=69.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------Hh---HcCCeecCCC----cccchhhhh------
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------LA---QVGADVPAEI----FEISPVDRI------ 1073 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------lA---QiG~~VPA~~----a~l~~~d~i------ 1073 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+.- +. .+ .|||.+. ..+++.+.+
T Consensus 338 ~~l~~isl~i-~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i-~~v~q~~~~~~~~~tv~e~l~~~~~~ 415 (556)
T PRK11819 338 LLIDDLSFSL-PPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKL-AYVDQSRDALDPNKTVWEEISGGLDI 415 (556)
T ss_pred eeecceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEE-EEEeCchhhcCCCCCHHHHHHhhccc
Confidence 4667777776 4578999999999999999999985431 11 12 2666652 123344333
Q ss_pred -------------hhccCccc-hHhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChHHHHhh
Q 001187 1074 -------------FVRMGAKD-HIMAGQSTFLTELSET-ALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1074 -------------~trig~~d-~i~~g~StF~~em~e~-~~il~~at~~sLvllDElGRGTst~DG~AI 1127 (1129)
+.++|..+ ....-.++++..+++- +.+..-+..+.++||||+..|-++.--..|
T Consensus 416 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 484 (556)
T PRK11819 416 IKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL 484 (556)
T ss_pred ccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 22333321 2223345665555553 444445789999999999999887654443
No 264
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.66 E-value=8.2e-05 Score=80.60 Aligned_cols=111 Identities=15% Similarity=0.234 Sum_probs=67.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------------------HHhHcCCeecCCC---c
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------------------ILAQVGADVPAEI---F 1065 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------------------ilAQiG~~VPA~~---a 1065 (1129)
.+-++++|.. ..+.++.|+||.||||||||..++.+- -.-+|| ||.... .
T Consensus 19 ~~L~~v~l~i-~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iG-fvFQ~~nLl~ 96 (226)
T COG1136 19 EALKDVNLEI-EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIG-FVFQNFNLLP 96 (226)
T ss_pred EecccceEEE-cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEE-EECccCCCCC
Confidence 4667788876 468899999999999999999998553 112334 222221 1
Q ss_pred ccchh---------------------hhhhhccCccchHh-hcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChH
Q 001187 1066 EISPV---------------------DRIFVRMGAKDHIM-AGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1066 ~l~~~---------------------d~i~trig~~d~i~-~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~ 1122 (1129)
.++.. ..++.++|..+... .--+..+...++-..|. .-+.++.+||.||+----++.
T Consensus 97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176 (226)
T ss_pred CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence 11222 22334445554444 33345555555544444 457999999999997655555
Q ss_pred HHHh
Q 001187 1123 DGQA 1126 (1129)
Q Consensus 1123 DG~A 1126 (1129)
-+-.
T Consensus 177 t~~~ 180 (226)
T COG1136 177 TAKE 180 (226)
T ss_pred HHHH
Confidence 4433
No 265
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.66 E-value=5.7e-05 Score=92.26 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=63.9
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH----------------------HhHcCCeecCCCc---ccch
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------------LAQVGADVPAEIF---EISP 1069 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi----------------------lAQiG~~VPA~~a---~l~~ 1069 (1129)
+-+|++|.. ..+.+++|+||||+|||||||.++.+.- -.++| |||.+.. .+++
T Consensus 13 il~~vs~~i-~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv 90 (491)
T PRK10982 13 ALDNVNLKV-RPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGIS-MVHQELNLVLQRSV 90 (491)
T ss_pred eeeeeeEEE-cCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEE-EEecccccccCCCH
Confidence 445666665 3578999999999999999999975430 01232 5665431 1233
Q ss_pred hhhhh------------------------hccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1070 VDRIF------------------------VRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1070 ~d~i~------------------------trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~DG 1124 (1129)
.+.+. .++|....+.....+++..+++...| ..-+.++.++||||+..|-+..--
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~ 170 (491)
T PRK10982 91 MDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV 170 (491)
T ss_pred HHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 33332 22222211122233454444443333 334678899999999999887643
No 266
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.66 E-value=7.6e-05 Score=92.50 Aligned_cols=37 Identities=32% Similarity=0.225 Sum_probs=30.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.|+.+.
T Consensus 21 ~il~~vs~~i-~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 21 QILKDISLSF-FPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred eeeeCceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556777766 457899999999999999999998653
No 267
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.65 E-value=9.6e-05 Score=81.99 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=28.9
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|+++.. ..+.+++|.||||+|||||||.++.+
T Consensus 18 ~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 18 ALKKINLDI-EENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred eeecceEEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 556677765 35789999999999999999999854
No 268
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.65 E-value=8.7e-05 Score=87.20 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=29.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||+++-+
T Consensus 38 ~~l~~vsf~i-~~Gei~~I~G~nGsGKSTLlr~L~Gl 73 (382)
T TIGR03415 38 VGVANASLDI-EEGEICVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred EEEEeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4456677765 45789999999999999999999754
No 269
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=0.00011 Score=81.52 Aligned_cols=35 Identities=34% Similarity=0.347 Sum_probs=28.5
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 19 ~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 19 ALNDINLPI-YENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 455666665 35789999999999999999999864
No 270
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=0.0001 Score=82.51 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=29.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 22 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 22 MAVRDSHVPI-RKNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred EEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 3556666665 35789999999999999999999754
No 271
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=8.1e-05 Score=83.11 Aligned_cols=36 Identities=39% Similarity=0.419 Sum_probs=29.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.|+-.
T Consensus 24 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 24 AILKDITIKI-PNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred eeEeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567777765 35789999999999999999999844
No 272
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.62 E-value=0.00012 Score=78.84 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=62.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH---------------------HhHcCCeecCCCcc--cchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------LAQVGADVPAEIFE--ISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi---------------------lAQiG~~VPA~~a~--l~~~ 1070 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- -.++| |||.+..- .++.
T Consensus 22 ~~l~~isl~i-~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~ 99 (207)
T cd03369 22 PVLKNVSFKV-KAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT-IIPQDPTLFSGTIR 99 (207)
T ss_pred ccccCceEEE-CCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE-EEecCCcccCccHH
Confidence 4566677765 3578999999999999999999985420 11232 45544211 1222
Q ss_pred hhhh--hccCccch------HhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1071 DRIF--VRMGAKDH------IMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1071 d~i~--trig~~d~------i~~g~StF~-~em~e~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
+.|- .... .+. +......+. .+.++++.+..-+.+++++||||+-.|-+...-
T Consensus 100 ~~l~~~~~~~-~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 161 (207)
T cd03369 100 SNLDPFDEYS-DEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161 (207)
T ss_pred HHhcccCCCC-HHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 2221 0000 000 111122232 244445555555789999999999999887643
No 273
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=8.3e-05 Score=81.83 Aligned_cols=107 Identities=16% Similarity=0.218 Sum_probs=61.3
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------------------HhHcCCeecCCCcc---cchhhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIFE---ISPVDR 1072 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------------------lAQiG~~VPA~~a~---l~~~d~ 1072 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+.- ...+ .|||.+... +++.+.
T Consensus 14 ~l~~is~~i-~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i-~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEV-ERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI-SYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCE-EEEeecCccCCCccHHHH
Confidence 344555654 3478999999999999999999975420 1112 345544211 122222
Q ss_pred h---------------------hhccCccchHhhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1073 I---------------------FVRMGAKDHIMAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1073 i---------------------~trig~~d~i~~g~StF~~-em~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+ +.++|....+.....+++. +.++++.+..-+..+.++||||+-.|-+...
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~ 164 (235)
T cd03299 92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT 164 (235)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHH
Confidence 2 1122222222222234443 3344444445578889999999999987654
No 274
>PRK13409 putative ATPase RIL; Provisional
Probab=97.62 E-value=0.00011 Score=91.45 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=67.3
Q ss_pred ccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------HhHcCCeecCCC---cccchhh-------------
Q 001187 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------LAQVGADVPAEI---FEISPVD------------- 1071 (1129)
Q Consensus 1016 pNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------lAQiG~~VPA~~---a~l~~~d------------- 1071 (1129)
-+++++.. ..+.+++|+||||+|||||||.++.+.- -..+ .|+|... ..+++.+
T Consensus 355 l~~~s~~i-~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i-~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 432 (590)
T PRK13409 355 LEVEGGEI-YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKI-SYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EEecceEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeE-EEecccccCCCCCcHHHHHHHHhhhcChHH
Confidence 34445544 3578999999999999999999985420 0112 2566542 1223322
Q ss_pred ---hhhhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHhh
Q 001187 1072 ---RIFVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1072 ---~i~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG~AI 1127 (1129)
.++.++|..+......++++..+++ ++.+..-+.++.|+||||+-.|-+...-..|
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l 492 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAV 492 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 2334444444344444555554444 4444445789999999999999887654443
No 275
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.62 E-value=9.6e-05 Score=90.92 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=66.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------HH---------------------hHcCCeecCCCc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------IL---------------------AQVGADVPAEIF 1065 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------il---------------------AQiG~~VPA~~a 1065 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. .+ .++| |||.+..
T Consensus 298 ~il~~is~~i-~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~-~v~q~~~ 375 (520)
T TIGR03269 298 KAVDNVSLEV-KEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIG-ILHQEYD 375 (520)
T ss_pred eEEeeEEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEE-EEccCcc
Confidence 3556777765 457899999999999999999997542 11 1133 5665421
Q ss_pred ---ccchhhhh--------------------hhccCccc-----hHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCC
Q 001187 1066 ---EISPVDRI--------------------FVRMGAKD-----HIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELG 1116 (1129)
Q Consensus 1066 ---~l~~~d~i--------------------~trig~~d-----~i~~g~StF~~em~e-~~~il~~at~~sLvllDElG 1116 (1129)
.+++.+.+ +.++|..+ .+..-..+++..+++ ++.+..-+.++.++||||+-
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt 455 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 12333333 22333321 112223345455544 33333446889999999999
Q ss_pred CCCChHHHH
Q 001187 1117 RGTSTSDGQ 1125 (1129)
Q Consensus 1117 RGTst~DG~ 1125 (1129)
.|-++.--.
T Consensus 456 ~~LD~~~~~ 464 (520)
T TIGR03269 456 GTMDPITKV 464 (520)
T ss_pred ccCCHHHHH
Confidence 998876543
No 276
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=5.2e-05 Score=83.21 Aligned_cols=34 Identities=35% Similarity=0.487 Sum_probs=28.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+-.|+++.. ..+..++|+|||||||||+++.++
T Consensus 18 ~~l~~v~~~i-~~Ge~~~i~G~nGsGKSTL~~~l~ 51 (235)
T COG1122 18 AALKDVSLEI-EKGERVLLIGPNGSGKSTLLKLLN 51 (235)
T ss_pred eeeeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHc
Confidence 4555666665 457899999999999999999998
No 277
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=9.9e-05 Score=77.07 Aligned_cols=39 Identities=28% Similarity=0.413 Sum_probs=32.9
Q ss_pred CcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1012 ~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+..|-+|+++.. +.+.+..|.||||+||||||-.++-+.
T Consensus 13 ~~~vl~~isl~i-~~g~iTs~IGPNGAGKSTLLS~~sRL~ 51 (252)
T COG4604 13 TKVVLDDVSLDI-PKGGITSIIGPNGAGKSTLLSMMSRLL 51 (252)
T ss_pred CEEeeccceeee-cCCceeEEECCCCccHHHHHHHHHHhc
Confidence 357778888887 567899999999999999999987664
No 278
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=0.00011 Score=90.51 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=67.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------HHh---HcCCeecCCCc-----ccchhhhh-----
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------ILA---QVGADVPAEIF-----EISPVDRI----- 1073 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------ilA---QiG~~VPA~~a-----~l~~~d~i----- 1073 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+. .+. .+ .|||.+.. .+++.+.+
T Consensus 333 ~~l~~is~~i-~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i-~~~~q~~~~~~~~~~t~~~~~~~~~~ 410 (530)
T PRK15064 333 PLFKNLNLLL-EAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANI-GYYAQDHAYDFENDLTLFDWMSQWRQ 410 (530)
T ss_pred eeecCcEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEE-EEEcccccccCCCCCcHHHHHHHhcc
Confidence 3566777766 457899999999999999999998542 111 12 25665421 12333322
Q ss_pred -----------hhccCcc-chHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1074 -----------FVRMGAK-DHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1074 -----------~trig~~-d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
+.++|.. +.+....++++..+++...| ..-+.++.++||||+..|-++.--.
T Consensus 411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 475 (530)
T PRK15064 411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE 475 (530)
T ss_pred CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 2233332 22223345565555554333 3357889999999999998876543
No 279
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=0.00013 Score=81.03 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=29.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 19 ~~l~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 19 EALKGIDLDF-NQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred eEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3556666665 35789999999999999999999864
No 280
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.60 E-value=8.8e-05 Score=101.83 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=71.4
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc---ccch
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISP 1069 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a---~l~~ 1069 (1129)
..+-+|+++.. ..+.+++|.||||+||||+||+++.+. +-.++| |||.... .+++
T Consensus 943 k~aL~~lsl~I-~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG-~~pQ~~~L~~~LTV 1020 (2272)
T TIGR01257 943 RPAVDRLNITF-YENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG-MCPQHNILFHHLTV 1020 (2272)
T ss_pred ceEEEeeEEEE-cCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE-EEecCCcCCCCCCH
Confidence 34678888876 467899999999999999999998663 112344 5665431 2233
Q ss_pred hhh---------------------hhhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1070 VDR---------------------IFVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1070 ~d~---------------------i~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
.+. ++.++|..+....-.++++.+|++-..| ..-+.++.++||||+..|-++..-.
T Consensus 1021 ~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~ 1098 (2272)
T TIGR01257 1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRR 1098 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHH
Confidence 333 2333333333333345566666554333 3457889999999999998876543
No 281
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.60 E-value=0.00018 Score=81.52 Aligned_cols=121 Identities=15% Similarity=0.080 Sum_probs=69.2
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcC--------CeecCC
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPAE 1063 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG--------~~VPA~ 1063 (1129)
+.|.+++..+. . ..+-+|+++.. ..+.+++|+||||+|||||||.++.+.- ..-| .|||..
T Consensus 38 ~~l~i~nls~~---~------~~vL~~vs~~i-~~Ge~~~liG~NGsGKSTLl~~I~Gl~~-p~~G~I~i~g~i~yv~q~ 106 (282)
T cd03291 38 NNLFFSNLCLV---G------APVLKNINLKI-EKGEMLAITGSTGSGKTSLLMLILGELE-PSEGKIKHSGRISFSSQF 106 (282)
T ss_pred CeEEEEEEEEe---c------ccceeeeeEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEEEEeCc
Confidence 45777777542 0 23556677765 3578999999999999999999985421 1112 255554
Q ss_pred Cc--ccchhhhhhh--------------ccCccchHh-----------hcccchHHH-HHHHHHHHHhCCCCcEEEEeCC
Q 001187 1064 IF--EISPVDRIFV--------------RMGAKDHIM-----------AGQSTFLTE-LSETALMLSSATRNSLVVLDEL 1115 (1129)
Q Consensus 1064 ~a--~l~~~d~i~t--------------rig~~d~i~-----------~g~StF~~e-m~e~~~il~~at~~sLvllDEl 1115 (1129)
.. ..++.+.+.. +++..+.+. ...+.++.. .++++.+..-+.++.++||||+
T Consensus 107 ~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEP 186 (282)
T cd03291 107 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (282)
T ss_pred ccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 21 1133333221 111111110 001233333 3344444445788999999999
Q ss_pred CCCCChHH
Q 001187 1116 GRGTSTSD 1123 (1129)
Q Consensus 1116 GRGTst~D 1123 (1129)
-.|-++..
T Consensus 187 t~gLD~~~ 194 (282)
T cd03291 187 FGYLDVFT 194 (282)
T ss_pred CccCCHHH
Confidence 99998754
No 282
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=0.00013 Score=81.02 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=28.4
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 19 il~~~s~~i-~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 19 VLKNINMDF-PERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred EecceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 455666665 35789999999999999999999764
No 283
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.59 E-value=8.3e-05 Score=91.22 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=64.3
Q ss_pred ccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------H-------------HhHcC-CeecCCC------cccc
Q 001187 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------I-------------LAQVG-ADVPAEI------FEIS 1068 (1129)
Q Consensus 1016 pNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------i-------------lAQiG-~~VPA~~------a~l~ 1068 (1129)
-+|+++.. ..+.+++|+||||+|||||||.++.+. . .+..+ .|||.+. ..++
T Consensus 279 l~~isl~i-~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 279 FRNISLEV-RAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred ccceeEEE-cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 35666665 357899999999999999999997542 0 01112 3566531 0122
Q ss_pred hhhh------------------------hhhccCcc-chHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChH
Q 001187 1069 PVDR------------------------IFVRMGAK-DHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1069 ~~d~------------------------i~trig~~-d~i~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~ 1122 (1129)
+.+. ++.++|.. +....-.++++..+++-..|. .-+.++.|+||||+..|-++.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 2222 22333332 222222344555555433333 346788999999999998876
Q ss_pred HHHh
Q 001187 1123 DGQA 1126 (1129)
Q Consensus 1123 DG~A 1126 (1129)
--..
T Consensus 438 ~~~~ 441 (510)
T PRK15439 438 ARND 441 (510)
T ss_pred HHHH
Confidence 5443
No 284
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=6.6e-05 Score=88.02 Aligned_cols=107 Identities=31% Similarity=0.329 Sum_probs=60.8
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHc----------CCeecCCC----cccchhhhhhhc--
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQV----------GADVPAEI----FEISPVDRIFVR-- 1076 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQi----------G~~VPA~~----a~l~~~d~i~tr-- 1076 (1129)
..+-|...|.- ..+|=.+|+|+||.|||||||+|+- +|+ |||||+.. +.....|-|...
T Consensus 93 k~LL~~a~L~L-~~GrRYGLvGrNG~GKsTLLRaia~----~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~ 167 (582)
T KOG0062|consen 93 KILLNKANLTL-SRGRRYGLVGRNGIGKSTLLRAIAN----GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKE 167 (582)
T ss_pred hhhhcCCceee-ecccccceeCCCCCcHHHHHHHHHh----cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhh
Confidence 34455555544 2466789999999999999999995 554 66666642 222333322211
Q ss_pred ----cC---ccchHhhcccchHHHHHH-----------HHHHHHh--CCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1077 ----MG---AKDHIMAGQSTFLTELSE-----------TALMLSS--ATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1077 ----ig---~~d~i~~g~StF~~em~e-----------~~~il~~--at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
+. ..+.++.|. -|..||++ +...|.. -..++|+||||+ |+.-|=.|||
T Consensus 168 l~~~~~l~ei~~~~L~gl-GFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP---TNhLDv~av~ 235 (582)
T KOG0062|consen 168 LLAGLTLEEIYDKILAGL-GFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP---TNHLDVVAVA 235 (582)
T ss_pred hhccchHHHHHHHHHHhC-CCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC---cccchhHHHH
Confidence 10 011233333 24445543 2333332 367899999998 5555655554
No 285
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.58 E-value=0.00017 Score=80.76 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=28.4
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 25 il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 25 AVKNVWLDI-PKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred EeecceEEE-cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 445666665 35789999999999999999999854
No 286
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.58 E-value=0.00015 Score=80.39 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=28.8
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+++++.. ..+.+++|+||||+|||||||.++.+
T Consensus 16 ~l~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 16 ILRGLNLEV-RPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eeecceeEE-cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 456666665 35789999999999999999999865
No 287
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.58 E-value=0.00014 Score=79.00 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=27.9
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+++++.. ..+.+++|+||||+||||||+.++.+
T Consensus 16 il~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 16 TLSNINIRI-PTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred ceeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 445555554 34789999999999999999999855
No 288
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.57 E-value=7.6e-05 Score=92.01 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=30.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+
T Consensus 23 ~~l~~isl~i-~~Ge~~~iiG~nGsGKSTLl~~i~G~ 58 (529)
T PRK15134 23 TVVNDVSLQI-EAGETLALVGESGSGKSVTALSILRL 58 (529)
T ss_pred eeeeceEEEE-eCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4567777776 45789999999999999999999855
No 289
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.57 E-value=0.0002 Score=79.91 Aligned_cols=36 Identities=17% Similarity=0.014 Sum_probs=29.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-.|+++.. ..+.+++|+||||+|||||||.++..
T Consensus 35 ~il~~isl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 35 PVLKHVKAYI-KPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred cceeEEEEEE-cCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 3556677765 35789999999999999999999865
No 290
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.57 E-value=8.6e-05 Score=90.91 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=65.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH----------------------HhHcCCeecCCCc---ccc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------------LAQVGADVPAEIF---EIS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi----------------------lAQiG~~VPA~~a---~l~ 1068 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+.- -.++| |||.... .++
T Consensus 18 ~il~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~-~v~q~~~~~~~~t 95 (501)
T PRK11288 18 KALDDISFDC-RAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA-IIYQELHLVPEMT 95 (501)
T ss_pred EEEeeeeEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE-EEEechhccCCCC
Confidence 3556777766 3578999999999999999999975430 01233 5655421 123
Q ss_pred hhhhhh------------------------hccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHH
Q 001187 1069 PVDRIF------------------------VRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1069 ~~d~i~------------------------trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~D 1123 (1129)
+.+.+. .++|..+......++++..+++...| ..-+.++.++||||+..|-+...
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence 334332 22222211122234455555443333 33468899999999999988764
Q ss_pred H
Q 001187 1124 G 1124 (1129)
Q Consensus 1124 G 1124 (1129)
-
T Consensus 176 ~ 176 (501)
T PRK11288 176 I 176 (501)
T ss_pred H
Confidence 3
No 291
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=0.00015 Score=81.34 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=29.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 30 ~vl~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 30 QALKNINMMV-HEKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred eeeeeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3566677765 35789999999999999999999854
No 292
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.00019 Score=79.71 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=28.2
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 18 ~l~~~s~~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 18 ILKNVNLDI-PKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred EEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 445566655 35789999999999999999999854
No 293
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00013 Score=82.75 Aligned_cols=36 Identities=31% Similarity=0.284 Sum_probs=30.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+
T Consensus 20 ~~l~~vsl~i-~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 20 RALFDIDLEV-KKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred cceeeeEEEE-cCCCEEEEECCCCChHHHHHHHHhcC
Confidence 3556777776 45789999999999999999999855
No 294
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00017 Score=81.14 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=30.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.|+.+.
T Consensus 38 ~il~~vsl~i-~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 38 HALKNINLDI-HENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred ceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3556777766 357899999999999999999998653
No 295
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.54 E-value=0.00017 Score=76.12 Aligned_cols=95 Identities=21% Similarity=0.295 Sum_probs=54.4
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHh-------------HcCCeecCCCcccchh-h-hhhhccCccchHhhcccchHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAVILA-------------QVGADVPAEIFEISPV-D-RIFVRMGAKDHIMAGQSTFLTE 1093 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~vilA-------------QiG~~VPA~~a~l~~~-d-~i~trig~~d~i~~g~StF~~e 1093 (1129)
+.+|+||||+|||++|..|+++.... +-+.-..+.++.+.+. + .+|.-.. .....-.|.-+..
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~--~~~~~~LS~Ge~~ 101 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQ--GKVEQILSGGEKS 101 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecC--CcCcccCCHHHHH
Confidence 89999999999999999998754210 1011112223332221 1 1111111 1111115555555
Q ss_pred HHHHHHHHHh--CCCCcEEEEeCCCCCCChHHHH
Q 001187 1094 LSETALMLSS--ATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1094 m~e~~~il~~--at~~sLvllDElGRGTst~DG~ 1125 (1129)
...++.++.. ...++++|+||+-.|.+...-.
T Consensus 102 r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~ 135 (178)
T cd03239 102 LSALALIFALQEIKPSPFYVLDEIDAALDPTNRR 135 (178)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHH
Confidence 5556665543 3678999999999999876543
No 296
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00019 Score=79.71 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=29.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 18 ~~l~~vs~~i-~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 18 QAVKNVNLDV-QRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EeeccceEEE-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3556666665 35789999999999999999999865
No 297
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.53 E-value=0.0001 Score=90.23 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=67.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH------------------------hHcCCeecCCCc---c
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------------AQVGADVPAEIF---E 1066 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil------------------------AQiG~~VPA~~a---~ 1066 (1129)
.+-+|++|.. ..+.+++|.||||+|||||||.++.+.-- .++| |||.... .
T Consensus 15 ~il~~isl~i-~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 92 (500)
T TIGR02633 15 KALDGIDLEV-RPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV-IIHQELTLVPE 92 (500)
T ss_pred EeecceEEEE-eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE-EEeeccccCCC
Confidence 4667777776 45789999999999999999999854310 1122 5655431 2
Q ss_pred cchhhhh-------------------------hhccCccchH-hhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCC
Q 001187 1067 ISPVDRI-------------------------FVRMGAKDHI-MAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1067 l~~~d~i-------------------------~trig~~d~i-~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGT 1119 (1129)
+++.+.+ +.++|..+.. .....+++..+++...|.+ -+.++.++||||+-.|-
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L 172 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 2333332 2222222111 1123456665555444443 46788999999999999
Q ss_pred ChHHHHh
Q 001187 1120 STSDGQA 1126 (1129)
Q Consensus 1120 st~DG~A 1126 (1129)
+..--..
T Consensus 173 D~~~~~~ 179 (500)
T TIGR02633 173 TEKETEI 179 (500)
T ss_pred CHHHHHH
Confidence 8765443
No 298
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.53 E-value=0.00016 Score=88.75 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=65.9
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H--------H-hHcCCeecCCC------cc
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I--------L-AQVGADVPAEI------FE 1066 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i--------l-AQiG~~VPA~~------a~ 1066 (1129)
+-+|++|.. ..+.+++|+||||+|||||||.++.+. + + ..+ .|||... ..
T Consensus 278 ~l~~isl~i-~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i-~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSV-CRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM-AYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc-EEccCccccCCCcCC
Confidence 556777766 457899999999999999999998542 0 0 123 3666541 11
Q ss_pred cchhhhh------------------------------hhccCcc-chHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeC
Q 001187 1067 ISPVDRI------------------------------FVRMGAK-DHIMAGQSTFLTELSETALM-LSSATRNSLVVLDE 1114 (1129)
Q Consensus 1067 l~~~d~i------------------------------~trig~~-d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDE 1114 (1129)
+++.+.+ +.++|.. +....-..+++..+++...| ..-+.++.++||||
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 435 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 2333332 2233332 22222234555555553333 33467899999999
Q ss_pred CCCCCChHHH
Q 001187 1115 LGRGTSTSDG 1124 (1129)
Q Consensus 1115 lGRGTst~DG 1124 (1129)
+..|-+..--
T Consensus 436 Pt~~LD~~~~ 445 (510)
T PRK09700 436 PTRGIDVGAK 445 (510)
T ss_pred CCCCcCHHHH
Confidence 9999887643
No 299
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.52 E-value=0.0002 Score=80.73 Aligned_cols=36 Identities=31% Similarity=0.256 Sum_probs=30.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+
T Consensus 39 ~il~~vs~~i-~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 39 QALFDISMRI-PKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred eEeeeEEEEE-cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4667777776 35789999999999999999999855
No 300
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.50 E-value=0.00017 Score=88.36 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=29.1
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|++|.. ..+.+++|+||||+|||||||.++.+
T Consensus 275 ~l~~is~~i-~~Ge~~~l~G~NGsGKSTLl~~l~G~ 309 (500)
T TIGR02633 275 RVDDVSFSL-RRGEILGVAGLVGAGRTELVQALFGA 309 (500)
T ss_pred ccccceeEE-eCCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 556777765 45789999999999999999999844
No 301
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.49 E-value=0.00014 Score=89.63 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=67.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-----------------------HhHcCCeecCCCc-----
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-----------------------LAQVGADVPAEIF----- 1065 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-----------------------lAQiG~~VPA~~a----- 1065 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+.- -..+ .|||....
T Consensus 300 ~il~~isl~i-~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i-~~v~q~~~~~l~~ 377 (529)
T PRK15134 300 VVVKNISFTL-RPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRI-QVVFQDPNSSLNP 377 (529)
T ss_pred eeeecceeEE-cCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhce-EEEEeCchhhcCC
Confidence 4667788776 4678999999999999999999986530 0113 35555421
Q ss_pred ccchhhhh-----------------------hhccCcc-chHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCC
Q 001187 1066 EISPVDRI-----------------------FVRMGAK-DHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1066 ~l~~~d~i-----------------------~trig~~-d~i~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTs 1120 (1129)
.+++.+.+ +.++|.. +....-.++++..+++...|. .-+.++.++||||+..|-+
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 12333332 2223332 122222345555555544443 3468899999999999988
Q ss_pred hHHH
Q 001187 1121 TSDG 1124 (1129)
Q Consensus 1121 t~DG 1124 (1129)
+.--
T Consensus 458 ~~~~ 461 (529)
T PRK15134 458 KTVQ 461 (529)
T ss_pred HHHH
Confidence 7643
No 302
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.49 E-value=0.00018 Score=89.14 Aligned_cols=36 Identities=33% Similarity=0.246 Sum_probs=29.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+
T Consensus 19 ~il~~is~~i-~~Ge~~~liG~NGsGKSTLl~~i~G~ 54 (552)
T TIGR03719 19 EILKDISLSF-FPGAKIGVLGLNGAGKSTLLRIMAGV 54 (552)
T ss_pred eeecCceEEE-CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3556677765 45789999999999999999999854
No 303
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.49 E-value=0.00018 Score=90.70 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=29.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.|+.+
T Consensus 17 ~il~~is~~i-~~Ge~v~LvG~NGsGKSTLLriiaG~ 52 (635)
T PRK11147 17 PLLDNAELHI-EDNERVCLVGRNGAGKSTLMKILNGE 52 (635)
T ss_pred eeEeCcEEEE-CCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3556777765 35789999999999999999999854
No 304
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.49 E-value=0.0007 Score=85.33 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=34.5
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecC
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA 1062 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA 1062 (1129)
..+-+|+++.. ..+..++|+|+||||||||+|.+. |.|.|.
T Consensus 486 ~~vL~~isL~I-~~Ge~vaIvG~SGsGKSTL~KLL~--------gly~p~ 526 (709)
T COG2274 486 PPVLEDLSLEI-PPGEKVAIVGRSGSGKSTLLKLLL--------GLYKPQ 526 (709)
T ss_pred cchhhceeEEe-CCCCEEEEECCCCCCHHHHHHHHh--------cCCCCC
Confidence 46788888887 467899999999999999999988 666654
No 305
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00017 Score=88.43 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=29.6
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|++|.. ..+.+++|+||||+|||||||.++.+
T Consensus 277 vl~~vsl~i-~~Ge~~~l~G~NGsGKSTLlk~i~Gl 311 (506)
T PRK13549 277 RVDDVSFSL-RRGEILGIAGLVGAGRTELVQCLFGA 311 (506)
T ss_pred cccceeeEE-cCCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 567777776 45789999999999999999999854
No 306
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.49 E-value=0.00016 Score=74.72 Aligned_cols=88 Identities=23% Similarity=0.289 Sum_probs=60.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCC-------------------cccchhhhhhhccCccchHhhc
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-------------------FEISPVDRIFVRMGAKDHIMAG 1086 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~-------------------a~l~~~d~i~trig~~d~i~~g 1086 (1129)
.+.++.|.||.|+||||||..|| |+-.|+.. +.+..-..+|+++...+|+.-|
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIA--------GF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIA--------GFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHH--------hccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhccc
Confidence 46799999999999999999999 77777643 1122235688888888888777
Q ss_pred ccch-------------------------------HH-HHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 001187 1087 QSTF-------------------------------LT-ELSETALMLSSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1087 ~StF-------------------------------~~-em~e~~~il~~at~~sLvllDElGRGTst 1121 (1129)
.|-- +. |-+++|.+---..++.++||||....-++
T Consensus 96 l~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP 162 (231)
T COG3840 96 LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162 (231)
T ss_pred CCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCH
Confidence 6521 11 11222222223567889999999876554
No 307
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.00024 Score=82.16 Aligned_cols=130 Identities=16% Similarity=0.140 Sum_probs=76.7
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH------------------
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------ 1053 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil------------------ 1053 (1129)
..|.+++...-+-. ....+-+|+++.. ..+.+++|+||||+||||||+.++...-.
T Consensus 79 ~~i~~~nls~~y~~-----~~~~~L~~is~~I-~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----RTKHVLHDLNLDI-KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred ceEEEEeeEEEecC-----CCceeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 45677666542211 1235778888876 45789999999999999999999855411
Q ss_pred ---------hHcCCeecCCCc--ccchhhhhh----------------------hccCc----cchHhhcccchHHHHHH
Q 001187 1054 ---------AQVGADVPAEIF--EISPVDRIF----------------------VRMGA----KDHIMAGQSTFLTELSE 1096 (1129)
Q Consensus 1054 ---------AQiG~~VPA~~a--~l~~~d~i~----------------------trig~----~d~i~~g~StF~~em~e 1096 (1129)
.+-=.|||.+.. ..++.+.|. .+.+. .+.+....+.++..+++
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred ccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 111135665531 223333332 11111 11122334555555555
Q ss_pred HHHHHH-hCCCCcEEEEeCCCCCCChHHHHhh
Q 001187 1097 TALMLS-SATRNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1097 ~~~il~-~at~~sLvllDElGRGTst~DG~AI 1127 (1129)
...|.+ -+..+.++||||.-.|-++.-+..|
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i 264 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKI 264 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 444433 4678899999999999987655443
No 308
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.00017 Score=90.69 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=68.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H-----------HhHcCCeecCCCc----
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I-----------LAQVGADVPAEIF---- 1065 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i-----------lAQiG~~VPA~~a---- 1065 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.|+.+. + -.++| |||.+..
T Consensus 338 ~~l~~vs~~i-~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~-~v~Q~~~~~l~ 415 (623)
T PRK10261 338 HAVEKVSFDL-WPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQ-FIFQDPYASLD 415 (623)
T ss_pred EEEeeeEeEE-cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeE-EEecCchhhcC
Confidence 3567888876 467899999999999999999998553 0 01233 5665421
Q ss_pred -ccchhhhh----------------------hhccCcc-chHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 001187 1066 -EISPVDRI----------------------FVRMGAK-DHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1066 -~l~~~d~i----------------------~trig~~-d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTs 1120 (1129)
.+.+.+.+ +.++|.. +....-..+++..+++...|.+ -+..+.|+||||+..|-+
T Consensus 416 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 12333322 2233332 2222233566666666444443 468899999999999988
Q ss_pred hHHH
Q 001187 1121 TSDG 1124 (1129)
Q Consensus 1121 t~DG 1124 (1129)
..--
T Consensus 496 ~~~~ 499 (623)
T PRK10261 496 VSIR 499 (623)
T ss_pred HHHH
Confidence 7543
No 309
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.47 E-value=0.00019 Score=87.86 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=28.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-.+++|.. ..+.+++|+||||+|||||||.++-+
T Consensus 268 ~l~~isl~i-~~Ge~~~iiG~NGsGKSTLlk~l~G~ 302 (501)
T PRK11288 268 LREPISFSV-RAGEIVGLFGLVGAGRSELMKLLYGA 302 (501)
T ss_pred cccceeEEE-eCCcEEEEEcCCCCCHHHHHHHHcCC
Confidence 445566665 35789999999999999999998744
No 310
>PLN03073 ABC transporter F family; Provisional
Probab=97.46 E-value=0.0002 Score=90.76 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=65.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH----------hHcCCeecCCC-cccch-------------
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL----------AQVGADVPAEI-FEISP------------- 1069 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil----------AQiG~~VPA~~-a~l~~------------- 1069 (1129)
.+-.|++|.. ..+.+++|+||||+|||||||.++.+.-. ..+| |||... ..+.+
T Consensus 523 ~il~~vsl~i-~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~ig-yv~Q~~~~~l~~~~~~~~~~~~~~~ 600 (718)
T PLN03073 523 LLFKNLNFGI-DLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMA-VFSQHHVDGLDLSSNPLLYMMRCFP 600 (718)
T ss_pred eeEeccEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEE-EEeccccccCCcchhHHHHHHHhcC
Confidence 3566777765 35789999999999999999999854310 0122 444432 11111
Q ss_pred ------hhhhhhccCccc-hHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1070 ------VDRIFVRMGAKD-HIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1070 ------~d~i~trig~~d-~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+..++.++|..+ ......++++..+++ ++.+...+..+.++||||+..|-+..-
T Consensus 601 ~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s 662 (718)
T PLN03073 601 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA 662 (718)
T ss_pred CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 112334445442 223334556555555 444444578899999999999988753
No 311
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.46 E-value=0.00041 Score=75.28 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+|.||||+||||+|++|..+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999844
No 312
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.45 E-value=9.8e-05 Score=80.05 Aligned_cols=33 Identities=33% Similarity=0.554 Sum_probs=25.9
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+++.|....++.+++|+||||+||||+|+.|+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHhee
Confidence 555554323367999999999999999999973
No 313
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00029 Score=78.82 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=29.1
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-.|++|.. ..+.+++|+||||+|||||||.++.+
T Consensus 22 il~~is~~i-~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 22 ILEGVSMEI-YQSKVTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred EeeceEEEE-cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 556666665 35789999999999999999999865
No 314
>PLN03211 ABC transporter G-25; Provisional
Probab=97.44 E-value=0.00015 Score=91.23 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=64.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------------HHhHcCCeecCCCc---ccchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------------ILAQVGADVPAEIF---EISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------------ilAQiG~~VPA~~a---~l~~~d 1071 (1129)
.+-+|+++.. ..+.+++|.||||+||||||+.++... ...++ +|||.+.. .+++.+
T Consensus 82 ~iL~~vs~~i-~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i-~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 82 TILNGVTGMA-SPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPHLTVRE 159 (659)
T ss_pred eeeeCCEEEE-ECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccce-EEECcccccCCcCCHHH
Confidence 3566777765 357899999999999999999998542 11223 46765532 223333
Q ss_pred hh------------------------hhccCccchH---h--hcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 001187 1072 RI------------------------FVRMGAKDHI---M--AGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1072 ~i------------------------~trig~~d~i---~--~g~StF~~-em~e~~~il~~at~~sLvllDElGRGTst 1121 (1129)
.+ +..+|..+.. . .....++. |.++++.+..-+.+++++||||+-.|-++
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 22 2222221100 0 00122333 33444444455788999999999999887
Q ss_pred HHH
Q 001187 1122 SDG 1124 (1129)
Q Consensus 1122 ~DG 1124 (1129)
..-
T Consensus 240 ~~~ 242 (659)
T PLN03211 240 TAA 242 (659)
T ss_pred HHH
Confidence 643
No 315
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.44 E-value=0.00022 Score=87.37 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=28.1
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-+|++|.. ..+.+++|+||||+|||||||.++.+
T Consensus 267 ~l~~vsl~i-~~Ge~~~liG~NGsGKSTLl~~l~G~ 301 (501)
T PRK10762 267 GVNDVSFTL-RKGEILGVSGLMGAGRTELMKVLYGA 301 (501)
T ss_pred CcccceEEE-cCCcEEEEecCCCCCHHHHHHHHhCC
Confidence 345666665 35789999999999999999999754
No 316
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.0002 Score=82.71 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=67.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH------------------------HhH----cCCeecCCCc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI------------------------LAQ----VGADVPAEIF 1065 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi------------------------lAQ----iG~~VPA~~a 1065 (1129)
.+-+|++|.. ..+.+++|.||||+|||||+|.++-+.- +.. .-.|||.+..
T Consensus 21 ~~l~~vsl~i-~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 21 RAVDRISYSV-KQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEeeeEEEE-CCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 3667788876 4678999999999999999999986531 011 1135665531
Q ss_pred -c----cchhh----------------------hhhhccCccc---hHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeC
Q 001187 1066 -E----ISPVD----------------------RIFVRMGAKD---HIMAGQSTFLTELSETALML-SSATRNSLVVLDE 1114 (1129)
Q Consensus 1066 -~----l~~~d----------------------~i~trig~~d---~i~~g~StF~~em~e~~~il-~~at~~sLvllDE 1114 (1129)
. +.+.+ ..+.++|..+ .+......++..|++-..|. .-+.++.|+|+||
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 1 11111 2233344332 12233345666666644443 3478899999999
Q ss_pred CCCCCChHH
Q 001187 1115 LGRGTSTSD 1123 (1129)
Q Consensus 1115 lGRGTst~D 1123 (1129)
.-.|-+..-
T Consensus 180 Pts~LD~~~ 188 (326)
T PRK11022 180 PTTALDVTI 188 (326)
T ss_pred CCCCCCHHH
Confidence 999987653
No 317
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.43 E-value=0.00017 Score=90.82 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=65.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------HHh---HcCCeecCCCc----ccchhhhhh-----
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------ILA---QVGADVPAEIF----EISPVDRIF----- 1074 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------ilA---QiG~~VPA~~a----~l~~~d~i~----- 1074 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++... .+. .+| |||.... .+++.+.+.
T Consensus 333 ~il~~vsl~i-~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~-y~~q~~~~l~~~~tv~e~l~~~~~~ 410 (635)
T PRK11147 333 QLVKDFSAQV-QRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-YFDQHRAELDPEKTVMDNLAEGKQE 410 (635)
T ss_pred EEEcCcEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEE-EEeCcccccCCCCCHHHHHHhhccc
Confidence 4667777766 457899999999999999999998542 111 122 4554321 123444332
Q ss_pred --------------hccCcc-chHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChHH
Q 001187 1075 --------------VRMGAK-DHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1075 --------------trig~~-d~i~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~D 1123 (1129)
.++|-. +......++++..+++-..+. .-+.++.++||||+..|-+...
T Consensus 411 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~ 475 (635)
T PRK11147 411 VMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET 475 (635)
T ss_pred ccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 122221 122223345555555533333 3467889999999999987654
No 318
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.42 E-value=0.00028 Score=77.16 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=28.2
Q ss_pred ccccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1016 pNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
-.|+++.. +.+.++++.||||+||||+||++..
T Consensus 40 Vqdisf~I-P~G~ivgflGaNGAGKSTtLKmLTG 72 (325)
T COG4586 40 VQDISFEI-PKGEIVGFLGANGAGKSTTLKMLTG 72 (325)
T ss_pred hheeeeec-CCCcEEEEEcCCCCcchhhHHHHhC
Confidence 35777776 5688999999999999999999883
No 319
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.42 E-value=0.00032 Score=77.45 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+|+||||+||||+|++|+.+
T Consensus 24 ~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 24 KHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999844
No 320
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.00015 Score=88.60 Aligned_cols=35 Identities=6% Similarity=0.084 Sum_probs=28.2
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-++++|.. ..+.+++|+||||+|||||||.++.+
T Consensus 263 ~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl 297 (491)
T PRK10982 263 SIRDVSFDL-HKGEILGIAGLVGAKRTDIVETLFGI 297 (491)
T ss_pred ccceeeEEE-eCCcEEEEecCCCCCHHHHHHHHcCC
Confidence 455666655 35789999999999999999999744
No 321
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00023 Score=82.52 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=31.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|++|.. ..+.+++|.|+||+|||||+|.|+.+
T Consensus 21 ~~l~~vsl~i-~~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 21 KAVDRVSMTL-TEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred EEEeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 4677888876 46789999999999999999999865
No 322
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.39 E-value=0.0004 Score=76.08 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=24.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLR 1045 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr 1045 (1129)
.+-+|++|.. ..+.+++|+||||+|||||++
T Consensus 9 ~~l~~vsl~i-~~Ge~~~l~G~sGsGKSTL~~ 39 (226)
T cd03270 9 HNLKNVDVDI-PRNKLVVITGVSGSGKSSLAF 39 (226)
T ss_pred hccccceeec-CCCcEEEEEcCCCCCHHHHHH
Confidence 4455677766 467899999999999999973
No 323
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00018 Score=77.91 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=68.2
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH----------------------------HHhHcCCe-----
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV----------------------------ILAQVGAD----- 1059 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v----------------------------ilAQiG~~----- 1059 (1129)
..+-+|++|.. +.+.+++|.||.|+||||+||+|--++ ++-|+|.|
T Consensus 14 ~~av~~v~l~I-~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv 92 (309)
T COG1125 14 KKAVDDVNLTI-EEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTV 92 (309)
T ss_pred ceeeeeeeEEe-cCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccH
Confidence 46778888887 468899999999999999999986554 45677766
Q ss_pred ------ecCCC----ccc-chhhhhhhccCccch-H-hhcccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 001187 1060 ------VPAEI----FEI-SPVDRIFVRMGAKDH-I-MAGQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1060 ------VPA~~----a~l-~~~d~i~trig~~d~-i-~~g~StF~~-em~e~~~il~~at~~sLvllDElGRGTst~ 1122 (1129)
||.=. .++ -..+.++..+|..-. . ..--+..+. +.+++.-+-.-|..+.++||||...--++.
T Consensus 93 ~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI 169 (309)
T COG1125 93 AENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPI 169 (309)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChh
Confidence 23210 000 113445555555422 1 111122222 344555444557888999999998766654
No 324
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.38 E-value=0.0013 Score=81.46 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=37.6
Q ss_pred cEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 993 ~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.|.+++.....-. ....+-+|+++.. ..+..++|+||||+||||+++.++-.
T Consensus 316 ~i~~~~v~~~y~~-----~~~~~l~~~~~~i-~~G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 316 HLSVENVTIVPPG-----GKKPTLRGISFRL-QAGEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred eEEEEEEEEEcCC-----CCccccccceEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4666665432211 1235778888877 46789999999999999999999743
No 325
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.37 E-value=0.00024 Score=89.80 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=65.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcC----------CeecCCCc--ccchhhhh--------
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG----------ADVPAEIF--EISPVDRI-------- 1073 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG----------~~VPA~~a--~l~~~d~i-------- 1073 (1129)
.+-+|+++.. ..+.+++|+||||+||||++|.++-+. -..-| .|||.+.. .-++.|.|
T Consensus 466 ~il~~isl~i-~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 543 (659)
T TIGR00954 466 VLIESLSFEV-PSGNHLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSED 543 (659)
T ss_pred eeeecceEEE-CCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhh
Confidence 4667777776 457899999999999999999998642 11111 25665531 11223332
Q ss_pred --------------hhccCccchHhhc---------ccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1074 --------------FVRMGAKDHIMAG---------QSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1074 --------------~trig~~d~i~~g---------~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.++|..+.+... ..+++..+++ ++.+..-+.++.++||||.-.|-++..
T Consensus 544 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~ 617 (659)
T TIGR00954 544 MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDV 617 (659)
T ss_pred hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 2223333222110 1345444444 333334468899999999999988753
No 326
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00033 Score=81.07 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=30.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+||+|.. ..+.+++|+|+||+|||||+|.|+.+
T Consensus 29 ~~l~~vsl~i-~~Ge~~~IvG~sGsGKSTLl~~l~gl 64 (327)
T PRK11308 29 KALDGVSFTL-ERGKTLAVVGESGCGKSTLARLLTMI 64 (327)
T ss_pred eEEeeeEEEE-CCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4677888876 46789999999999999999999865
No 327
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.00042 Score=87.06 Aligned_cols=109 Identities=8% Similarity=0.068 Sum_probs=68.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------HH----------------------------hHcCC
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------IL----------------------------AQVGA 1058 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------il----------------------------AQiG~ 1058 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||+++.+. .+ .+||
T Consensus 30 ~~l~~is~~v-~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig- 107 (623)
T PRK10261 30 AAVRNLSFSL-QRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMA- 107 (623)
T ss_pred eEEEeeEEEE-CCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEE-
Confidence 4677888876 467899999999999999999998553 00 0132
Q ss_pred eecCCC-----cccchhhh----------------------hhhccCccc---hHhhcccchHHHHHHHHHHHH-hCCCC
Q 001187 1059 DVPAEI-----FEISPVDR----------------------IFVRMGAKD---HIMAGQSTFLTELSETALMLS-SATRN 1107 (1129)
Q Consensus 1059 ~VPA~~-----a~l~~~d~----------------------i~trig~~d---~i~~g~StF~~em~e~~~il~-~at~~ 1107 (1129)
|||... ..+++.+. ++.++|..+ .+..-..+++..|++-..|.+ -+.++
T Consensus 108 ~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P 187 (623)
T PRK10261 108 MIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRP 187 (623)
T ss_pred EEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCC
Confidence 455442 11233332 233344321 123334566666666444443 47889
Q ss_pred cEEEEeCCCCCCChHHH
Q 001187 1108 SLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1108 sLvllDElGRGTst~DG 1124 (1129)
.|+||||+..|-+...-
T Consensus 188 ~lLllDEPt~~LD~~~~ 204 (623)
T PRK10261 188 AVLIADEPTTALDVTIQ 204 (623)
T ss_pred CEEEEeCCCCccCHHHH
Confidence 99999999999887653
No 328
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.30 E-value=0.00025 Score=83.72 Aligned_cols=110 Identities=21% Similarity=0.231 Sum_probs=67.5
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccc--------------------------
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEIS-------------------------- 1068 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~-------------------------- 1068 (1129)
+-+++.++.+ ...-+.|.||||+||||+||.+..-+ .-.+|.-.|-..+.++
T Consensus 405 iy~~l~fgid-~~srvAlVGPNG~GKsTLlKl~~gdl-~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~ 482 (614)
T KOG0927|consen 405 IYKKLNFGID-LDSRVALVGPNGAGKSTLLKLITGDL-QPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPD 482 (614)
T ss_pred hhhhhhcccC-cccceeEecCCCCchhhhHHHHhhcc-ccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccc
Confidence 5666777653 34458899999999999999986432 2333443333333333
Q ss_pred -----hhhhhhhccCcc-chHhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChHHHHh
Q 001187 1069 -----PVDRIFVRMGAK-DHIMAGQSTFLTELSET-ALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1129)
Q Consensus 1069 -----~~d~i~trig~~-d~i~~g~StF~~em~e~-~~il~~at~~sLvllDElGRGTst~DG~A 1126 (1129)
.+..|.-|+|.. |....-.|+.++.++.. ....-..+.+-|+||||...|-+..-=-+
T Consensus 483 ~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~ 547 (614)
T KOG0927|consen 483 EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDA 547 (614)
T ss_pred cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHH
Confidence 233455566654 43344455566665553 33333457889999999999987654333
No 329
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.30 E-value=0.0018 Score=80.72 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=66.4
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCc--ccch
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIF--EISP 1069 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a--~l~~ 1069 (1129)
..+-+|+++.. .++..++|+||||+||||++|.++-.. +-.++ .|||.+.. .-++
T Consensus 353 ~~iL~~inl~i-~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i-~~~~Q~~~lf~~Ti 430 (576)
T TIGR02204 353 QPALDGLNLTV-RPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM-ALVPQDPVLFAASV 430 (576)
T ss_pred CccccceeEEe-cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc-eEEccCCccccccH
Confidence 45777888876 467899999999999999999987442 11222 35666532 1122
Q ss_pred hhhhh---------------hccCccc-----------hHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 001187 1070 VDRIF---------------VRMGAKD-----------HIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1070 ~d~i~---------------trig~~d-----------~i~~g~StF~-~em~e~~~il~~at~~sLvllDElGRGTst~ 1122 (1129)
.|.|. ...|..+ .+..+.+.++ +|.++++.+-.-..+++++||||.-.+.+..
T Consensus 431 ~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~ 510 (576)
T TIGR02204 431 MENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE 510 (576)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHH
Confidence 22221 1112111 1122233343 4555555555556788999999999988765
Q ss_pred H
Q 001187 1123 D 1123 (1129)
Q Consensus 1123 D 1123 (1129)
-
T Consensus 511 ~ 511 (576)
T TIGR02204 511 S 511 (576)
T ss_pred H
Confidence 3
No 330
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.29 E-value=0.00041 Score=81.57 Aligned_cols=41 Identities=32% Similarity=0.457 Sum_probs=33.5
Q ss_pred cccc-ccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCC
Q 001187 1014 FVPN-DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1129)
Q Consensus 1014 fvpN-di~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~ 1063 (1129)
++.| ||+|+. ..+.++.|.|-||+||||||+.+. |.|.|-+
T Consensus 17 ~~And~V~l~v-~~GeIHaLLGENGAGKSTLm~iL~--------G~~~P~~ 58 (501)
T COG3845 17 VVANDDVSLSV-KKGEIHALLGENGAGKSTLMKILF--------GLYQPDS 58 (501)
T ss_pred EEecCceeeee-cCCcEEEEeccCCCCHHHHHHHHh--------CcccCCc
Confidence 4444 477766 467899999999999999999998 8888764
No 331
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.28 E-value=0.0025 Score=79.79 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=67.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc--ccchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF--EISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a--~l~~~d 1071 (1129)
.|-+|+++.. .++..++|+|+||+|||||+|.++-.. -+.+.=+|||.+.. .-++.|
T Consensus 349 ~iL~~inl~i-~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~ 427 (588)
T PRK13657 349 QGVEDVSFEA-KPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIED 427 (588)
T ss_pred ceecceeEEE-CCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHH
Confidence 4778888876 467899999999999999999997432 11112245666531 112223
Q ss_pred hhh---------------hccCccch-----------HhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1072 RIF---------------VRMGAKDH-----------IMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1072 ~i~---------------trig~~d~-----------i~~g~StF~-~em~e~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
.|. .+.|..+. +..+...++ +|.++++.+-.-..+++++||||...+-++..-
T Consensus 428 Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~ 507 (588)
T PRK13657 428 NIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507 (588)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 221 11121111 112222343 455555555455789999999999999887654
Q ss_pred Hhh
Q 001187 1125 QAI 1127 (1129)
Q Consensus 1125 ~AI 1127 (1129)
..|
T Consensus 508 ~~i 510 (588)
T PRK13657 508 AKV 510 (588)
T ss_pred HHH
Confidence 433
No 332
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.28 E-value=0.00066 Score=84.14 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=66.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCccc--c--
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIFEI--S-- 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a~l--~-- 1068 (1129)
.+-+|+++.. ..+..++|+||||+|||||++.++-.. +-.|+| |||.+..-+ +
T Consensus 337 ~~l~~i~~~i-~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~lf~~ti~ 414 (547)
T PRK10522 337 FSVGPINLTI-KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS-AVFTDFHLFDQLLG 414 (547)
T ss_pred eEEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE-EEecChhHHHHhhc
Confidence 5778888876 467899999999999999999998331 122332 455443111 0
Q ss_pred ---------hhhhhhhccCccchHhhc-----ccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHh
Q 001187 1069 ---------PVDRIFVRMGAKDHIMAG-----QSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1129)
Q Consensus 1069 ---------~~d~i~trig~~d~i~~g-----~StF~-~em~e~~~il~~at~~sLvllDElGRGTst~DG~A 1126 (1129)
.+.....++|..+.+..+ -..++ .|.++++.+-.-..+++++||||.-.|-++..-..
T Consensus 415 ~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~ 487 (547)
T PRK10522 415 PEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRRE 487 (547)
T ss_pred cccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 011123334443332211 12333 34444444444578899999999999988765443
No 333
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.28 E-value=0.0004 Score=87.66 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=62.8
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------H----hHcCCeecCCCcc---c
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------L----AQVGADVPAEIFE---I 1067 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------l----AQiG~~VPA~~a~---l 1067 (1129)
+-.|+++.. ..+.+++|+||||+|||||||.++.+.- + -+.-.|||.+..- +
T Consensus 23 il~~vs~~i-~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 101 (648)
T PRK10535 23 VLKGISLDI-YAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHL 101 (648)
T ss_pred eeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence 555666665 3578999999999999999999986630 0 1122366654321 2
Q ss_pred chhhhh---------------------hhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChH
Q 001187 1068 SPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1068 ~~~d~i---------------------~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~ 1122 (1129)
++.+.+ +.++|..+.+.....++...+++-..+ ..-+.+++++||||+-.|-+..
T Consensus 102 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~ 178 (648)
T PRK10535 102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSH 178 (648)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 223222 222332222222333444444443333 3336788999999999998765
No 334
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00091 Score=71.00 Aligned_cols=37 Identities=32% Similarity=0.357 Sum_probs=30.7
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.-+-.||.|.. ..+.+..|.||.|+|||||||++-.+
T Consensus 20 ~~aL~~i~l~i-~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 20 KHALKDINLDI-PKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred hhhhccCceec-cCCceEEEECCCCcCHHHHHHHHHhh
Confidence 34667888887 56789999999999999999997544
No 335
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.26 E-value=0.0033 Score=80.07 Aligned_cols=36 Identities=31% Similarity=0.513 Sum_probs=31.4
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..+-+|+++.. ..+..++|+||||+||||++|.++-
T Consensus 466 ~~vL~~isl~i-~~Ge~vaIvG~sGsGKSTLlklL~g 501 (686)
T TIGR03797 466 PLILDDVSLQI-EPGEFVAIVGPSGSGKSTLLRLLLG 501 (686)
T ss_pred ccceeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46888888887 4678999999999999999999973
No 336
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.26 E-value=0.0006 Score=83.18 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=27.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-+-+++++.. ..+.-++|+|+||+|||||||.++
T Consensus 17 ~l~~~~~l~~-~~G~riGLvG~NGaGKSTLLkila 50 (530)
T COG0488 17 PLLENVSLTL-NPGERIGLVGRNGAGKSTLLKILA 50 (530)
T ss_pred eeecCCccee-CCCCEEEEECCCCCCHHHHHHHHc
Confidence 4455566655 346779999999999999999998
No 337
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00031 Score=71.71 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=66.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------HHhHcCCeec---CCC--------cccch---h--
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------ILAQVGADVP---AEI--------FEISP---V-- 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------ilAQiG~~VP---A~~--------a~l~~---~-- 1070 (1129)
.|-++++|.. ..+.+++|-||.|+||||+||++--.- +.-|.|.+|- |+. -+++. |
T Consensus 25 pV~~~vslsV-~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 25 PVLRNVSLSV-NAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeceeEEe-cCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 4556677776 357899999999999999999975221 1122232220 100 11111 1
Q ss_pred -----------------------------hhhhhccCccchHhhc-ccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCC
Q 001187 1071 -----------------------------DRIFVRMGAKDHIMAG-QSTFLTELSETALMLS-SATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1071 -----------------------------d~i~trig~~d~i~~g-~StF~~em~e~~~il~-~at~~sLvllDElGRGT 1119 (1129)
..+++|+...+.+..- -+||+..-++-.+|.+ -.+...++||||.-..-
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL 183 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence 1245555555555432 4799887777777776 47889999999987655
Q ss_pred Ch
Q 001187 1120 ST 1121 (1129)
Q Consensus 1120 st 1121 (1129)
+.
T Consensus 184 Da 185 (235)
T COG4778 184 DA 185 (235)
T ss_pred cc
Confidence 43
No 338
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.24 E-value=0.0008 Score=83.78 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=30.6
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..+-+++++.. ..+..++|+||||+||||+++.++-
T Consensus 328 ~~~l~~i~~~i-~~G~~~~ivG~sGsGKSTLl~ll~g 363 (569)
T PRK10789 328 HPALENVNFTL-KPGQMLGICGPTGSGKSTLLSLIQR 363 (569)
T ss_pred CccccCeeEEE-CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35778888876 4678999999999999999999974
No 339
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.23 E-value=0.0033 Score=78.55 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=30.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+-+|+++.. ..+..++|+||||+||||+++.++-
T Consensus 349 ~~l~~i~~~i-~~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 349 QGVFDVSFEA-KAGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred ccccceeEEE-cCCCEEEEECCCCCCHHHHHHHHcc
Confidence 4678888876 4678999999999999999999873
No 340
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.00025 Score=75.05 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=29.6
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.-+-+++++.. ..+.++.|.||||+|||||||.++
T Consensus 14 r~ll~~vsl~~-~pGev~ailGPNGAGKSTlLk~Ls 48 (259)
T COG4559 14 RRLLDGVSLDL-RPGEVLAILGPNGAGKSTLLKALS 48 (259)
T ss_pred ceeccCcceec-cCCcEEEEECCCCccHHHHHHHhh
Confidence 34667778876 457899999999999999999987
No 341
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.21 E-value=0.00052 Score=66.98 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=21.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
++.++|+||+|+||||+++.++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3579999999999999999998444
No 342
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.21 E-value=0.00035 Score=80.76 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=51.5
Q ss_pred EEecCCCchhHHHHHHHHHHH-------------------HhHcCCeecCCCc---ccchhhhh----------------
Q 001187 1032 LTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIF---EISPVDRI---------------- 1073 (1129)
Q Consensus 1032 itGpN~~GKSt~lr~i~l~vi-------------------lAQiG~~VPA~~a---~l~~~d~i---------------- 1073 (1129)
|+||||+|||||||.|+.+.- ..++| |||.+.. .+++.+.|
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHIN-MVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE-EEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 689999999999999985431 01122 4554432 22333332
Q ss_pred -----hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1074 -----FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1074 -----~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+.++|..+.+....++++..+++ ++.+..-+.++.++||||+..|-++.-
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~ 135 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKL 135 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH
Confidence 12222222122222344444444 333334578899999999999988753
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=97.21 E-value=0.00042 Score=87.95 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=29.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+-+|++|.. ..+..++|+||||+|||||||.++.
T Consensus 191 ~ll~~isl~i-~~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 191 DLIVDASVTL-AFGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred EEEECCEEEE-CCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3667788876 4578999999999999999999973
No 344
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.17 E-value=0.00097 Score=85.03 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=30.7
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..+-+|+++.. ..+..++|+||||+||||++|.++
T Consensus 478 ~~vL~~i~l~i-~~G~~iaIvG~sGsGKSTLlklL~ 512 (694)
T TIGR03375 478 TPALDNVSLTI-RPGEKVAIIGRIGSGKSTLLKLLL 512 (694)
T ss_pred ccceeeeeEEE-CCCCEEEEECCCCCCHHHHHHHHh
Confidence 45778888887 467899999999999999999997
No 345
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.16 E-value=0.0039 Score=78.06 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=30.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.|-+|+++.. ..+..++|+|+||+|||||+|.++
T Consensus 355 ~il~~i~l~i-~~Ge~iaIvG~SGsGKSTLl~lL~ 388 (592)
T PRK10790 355 LVLQNINLSV-PSRGFVALVGHTGSGKSTLASLLM 388 (592)
T ss_pred ceeeceeEEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 4778888877 467899999999999999999997
No 346
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.16 E-value=0.00074 Score=71.68 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=31.0
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.-+-|.++|+. ..+.|+.|.|.||+||||+++.|+
T Consensus 19 k~~l~~~sL~I-~~g~FvtViGsNGAGKSTlln~ia 53 (263)
T COG1101 19 KRALNGLSLEI-AEGDFVTVIGSNGAGKSTLLNAIA 53 (263)
T ss_pred HHHHhcCceee-cCCceEEEEcCCCccHHHHHHHhh
Confidence 46778888887 467899999999999999999998
No 347
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.14 E-value=0.0013 Score=73.11 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=22.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
++.+|+||||+||||+|.+|+.+.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l 46 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVL 46 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999776
No 348
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.14 E-value=0.0014 Score=71.25 Aligned_cols=24 Identities=38% Similarity=0.804 Sum_probs=21.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+|+||||+||||+|..|+++.
T Consensus 24 g~n~i~G~NgsGKS~lleAi~~~l 47 (213)
T cd03277 24 SLNMIIGPNGSGKSSIVCAICLGL 47 (213)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998765
No 349
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.14 E-value=0.00056 Score=85.91 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=70.2
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------HhHcCCeecCCCc---ccch
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF---EISP 1069 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lAQiG~~VPA~~a---~l~~ 1069 (1129)
..|-+|+++.. ..+++++|.||||+||||||+.++...- +.+.-.|||.+.. .+++
T Consensus 38 ~~iL~~vs~~i-~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 38 KHLLKNVSGVA-KPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred cccccCCEEEE-eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 45777888776 4678999999999999999999985321 0111146766532 1222
Q ss_pred h------------------------hhhhhccCccc---hHhh------cccchHHHHHHHHHHHHhCCCCcEEEEeCCC
Q 001187 1070 V------------------------DRIFVRMGAKD---HIMA------GQSTFLTELSETALMLSSATRNSLVVLDELG 1116 (1129)
Q Consensus 1070 ~------------------------d~i~trig~~d---~i~~------g~StF~~em~e~~~il~~at~~sLvllDElG 1116 (1129)
. +.++..+|..+ .... |.| ..|.++++.+..-++++++++|||+-
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LS--gGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLS--GGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcC--cchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 2 23333333321 1111 122 23456666666667899999999999
Q ss_pred CCCChHHHHhh
Q 001187 1117 RGTSTSDGQAI 1127 (1129)
Q Consensus 1117 RGTst~DG~AI 1127 (1129)
.|-+...-..|
T Consensus 195 sgLD~~~~~~l 205 (617)
T TIGR00955 195 SGLDSFMAYSV 205 (617)
T ss_pred cchhHHHHHHH
Confidence 99988765443
No 350
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.14 E-value=0.00082 Score=84.01 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=31.2
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..|-+|+++.. .++..++|+||+|+||||+++.++-
T Consensus 363 ~~vL~~i~l~i-~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 363 KTLAGPLNFTL-PAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CeeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35778888887 4678999999999999999999983
No 351
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.13 E-value=0.00064 Score=72.99 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+|+||||+||||+|..++++
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~ 44 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIG 44 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999998754
No 352
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0039 Score=75.10 Aligned_cols=99 Identities=21% Similarity=0.240 Sum_probs=60.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCC-CCCCCCcEEEeccCCCccccccCCCCccccc
Q 001187 939 RLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS-CSNEEPYISAKSLGHPVLRSDSLGKGEFVPN 1017 (1129)
Q Consensus 939 ~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~-~~~~~~~l~i~~~RHP~le~~~~~~~~fvpN 1017 (1129)
+++.-+++-...|.....-.|..|.+.+|-..- .+.|.-... .....+.+++. ..|--+.. ..++.+++
T Consensus 269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~------~~~~~~~~~~~~~~~~~~ei~-~~~l~~~y---~~g~~~l~ 338 (559)
T COG4988 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESP------VATPGSGEKAEVANEPPIEIS-LENLSFRY---PDGKPALS 338 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC------CCCCCCccccccccCCCceee-ecceEEec---CCCCcccC
Confidence 444445555666777777788888888875432 222211100 00012234443 22222221 23348999
Q ss_pred ccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1018 di~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
|+++.. ..++.++|.|++|+||||++..++
T Consensus 339 ~l~~t~-~~g~~talvG~SGaGKSTLl~lL~ 368 (559)
T COG4988 339 DLNLTI-KAGQLTALVGASGAGKSTLLNLLL 368 (559)
T ss_pred CceeEe-cCCcEEEEECCCCCCHHHHHHHHh
Confidence 999987 467899999999999999999987
No 353
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.11 E-value=0.00054 Score=57.98 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=38.7
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccC-Cchhhhcc
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDL 149 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-gd~e~l~l 149 (1129)
-+|..|.+.| .|..||.|+|+++++. +.+.|.|.| |..|++..
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~ 47 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPP 47 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeH
Confidence 4799999999 9999999999999988 889999977 99987763
No 354
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.11 E-value=0.00089 Score=77.58 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=30.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
-+-+|++|.. ..+.+++|.|+||+|||||+|.++.+.
T Consensus 30 ~~l~~vsl~i-~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 30 TAVNDLNFSL-RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred EEEeeeEEEE-cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3567778776 457899999999999999999998553
No 355
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.11 E-value=0.0014 Score=73.25 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=28.7
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhH
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ 1055 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQ 1055 (1129)
+++++.. +.+.+++|||+.|||||||++.+..-.+.++
T Consensus 12 ~~v~~~i-p~g~~~~vtGvSGsGKStL~~~~l~~~~~~~ 49 (261)
T cd03271 12 KNIDVDI-PLGVLTCVTGVSGSGKSSLINDTLYPALARR 49 (261)
T ss_pred CCceeec-cCCcEEEEECCCCCchHHHHHHHHHHHHHHH
Confidence 3455554 4578999999999999999998865444444
No 356
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.08 E-value=0.00087 Score=85.68 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=65.9
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCc--ccch
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIF--EISP 1069 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a--~l~~ 1069 (1129)
..+-+|+++.. ..+..++|+||||+|||||+|.++-+. +-.++| |||.+.. .-++
T Consensus 492 ~~vL~~isl~i-~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~-~v~Q~~~lf~gTi 569 (710)
T TIGR03796 492 PPLIENFSLTL-QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA-MVDQDIFLFEGTV 569 (710)
T ss_pred CCcccceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee-EEecCChhhhccH
Confidence 35778888887 467899999999999999999997432 122333 6666531 1123
Q ss_pred hhhhh---------------hccCccchH-----------hhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 001187 1070 VDRIF---------------VRMGAKDHI-----------MAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1070 ~d~i~---------------trig~~d~i-----------~~g~StF~-~em~e~~~il~~at~~sLvllDElGRGTst~ 1122 (1129)
.|.|. ...|..+.+ .++-..++ +|.++++.+-.-..+++++||||...+-+..
T Consensus 570 ~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~ 649 (710)
T TIGR03796 570 RDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPE 649 (710)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHH
Confidence 33331 111222211 11122333 3444444444456889999999999888775
Q ss_pred HH
Q 001187 1123 DG 1124 (1129)
Q Consensus 1123 DG 1124 (1129)
--
T Consensus 650 te 651 (710)
T TIGR03796 650 TE 651 (710)
T ss_pred HH
Confidence 43
No 357
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.07 E-value=0.0006 Score=73.53 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.2
Q ss_pred eEEEEecCCCchhHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+++|.||||+||||+|+.|+.+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~ 45 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYA 45 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999998754
No 358
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.07 E-value=0.0013 Score=68.66 Aligned_cols=36 Identities=33% Similarity=0.492 Sum_probs=29.8
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.-+|+++.. ..+.|+-||||.|+|||||||.|+...
T Consensus 17 aL~~vs~~i-~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 17 ALRDVSFHI-PKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred hhhCceEee-cCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 445677766 467899999999999999999998654
No 359
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.06 E-value=0.0015 Score=81.55 Aligned_cols=110 Identities=18% Similarity=0.217 Sum_probs=67.5
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCc--ccch
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIF--EISP 1069 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a--~l~~ 1069 (1129)
..+-+|+++.. ..+..++|+||||+||||+++.++-.. +-.++| |||.+.. .-++
T Consensus 353 ~~il~~i~~~i-~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~ti 430 (574)
T PRK11160 353 QPVLKGLSLQI-KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS-VVSQRVHLFSATL 430 (574)
T ss_pred CcceecceEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhee-EEcccchhhcccH
Confidence 35778888877 467899999999999999999997432 122333 5666531 1122
Q ss_pred hhhh---------------hhccCccchHhh----------cccchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1070 VDRI---------------FVRMGAKDHIMA----------GQSTFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1070 ~d~i---------------~trig~~d~i~~----------g~StF~~-em~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.|.| ..+.|..+.+.. +...++. |-++++.+-.-..++.++||||.-.+-++..
T Consensus 431 ~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t 510 (574)
T PRK11160 431 RDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510 (574)
T ss_pred HHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 2222 223343433332 2233433 4444444444567889999999999887754
Q ss_pred H
Q 001187 1124 G 1124 (1129)
Q Consensus 1124 G 1124 (1129)
-
T Consensus 511 ~ 511 (574)
T PRK11160 511 E 511 (574)
T ss_pred H
Confidence 3
No 360
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.06 E-value=0.0015 Score=81.35 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=66.9
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc--ccchh
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF--EISPV 1070 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a--~l~~~ 1070 (1129)
..|-+|+.+.. ..+..++|+|+||+|||||+|.++-+. -+.+.=+|||.+.. .-++.
T Consensus 345 ~~il~~inl~i-~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 423 (571)
T TIGR02203 345 RPALDSISLVI-EPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423 (571)
T ss_pred CccccCeeEEe-cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence 46778888876 457899999999999999999987442 01111246666531 11222
Q ss_pred hhh----------------hhccCccchHh-----------hcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 001187 1071 DRI----------------FVRMGAKDHIM-----------AGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1071 d~i----------------~trig~~d~i~-----------~g~StF~-~em~e~~~il~~at~~sLvllDElGRGTst~ 1122 (1129)
|.| ....|..+.+. .+...++ +|.++++.+-.-..+++++||||.-.+-+..
T Consensus 424 ~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~ 503 (571)
T TIGR02203 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503 (571)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 222 22222222111 1112333 3555555554557889999999998887765
Q ss_pred HHHh
Q 001187 1123 DGQA 1126 (1129)
Q Consensus 1123 DG~A 1126 (1129)
-...
T Consensus 504 ~~~~ 507 (571)
T TIGR02203 504 SERL 507 (571)
T ss_pred HHHH
Confidence 5443
No 361
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.05 E-value=0.0011 Score=82.26 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=63.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCccc--ch-
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIFEI--SP- 1069 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a~l--~~- 1069 (1129)
++-+|+++.. ..+..++|+||||+||||+++.++-.. +-.++| +||.+..-+ .+
T Consensus 356 ~~l~~vs~~i-~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~lf~~ti~ 433 (555)
T TIGR01194 356 FALGPIDLRI-AQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS-AIFADFHLFDDLIG 433 (555)
T ss_pred ceeccceEEE-cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCc-EEccChhhhhhhhh
Confidence 5678888876 467899999999999999999997321 112222 344332100 00
Q ss_pred -----------hhhhhhccCccchHh---hcc---cchHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1070 -----------VDRIFVRMGAKDHIM---AGQ---STFLT-ELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1070 -----------~d~i~trig~~d~i~---~g~---StF~~-em~e~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
+.....+.|..+.+. .|. ..++. |-++++.+-.-..++.++||||.-.|-++..-
T Consensus 434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~ 506 (555)
T TIGR01194 434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFK 506 (555)
T ss_pred cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 111223333333221 121 23333 44444444444688999999999999887643
No 362
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.01 E-value=0.00068 Score=58.54 Aligned_cols=33 Identities=36% Similarity=0.533 Sum_probs=25.3
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
-++.+.. .+.+.+|+||||+||||+|..+..+.
T Consensus 15 ~~~~~~~--~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 15 ETIDFDP--RGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred eEEeecC--CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455542 24589999999999999999988554
No 363
>PTZ00243 ABC transporter; Provisional
Probab=97.01 E-value=0.0014 Score=90.09 Aligned_cols=112 Identities=16% Similarity=0.233 Sum_probs=67.2
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------H-hHcCCeecCCCc--ccchhhhhhh-------
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------L-AQVGADVPAEIF--EISPVDRIFV------- 1075 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------l-AQiG~~VPA~~a--~l~~~d~i~t------- 1075 (1129)
..+-+|+++.. ..+.+++|+||||+||||||+.++...- + .++ .|||.+.. ..++.|.|..
T Consensus 673 ~~iL~~isl~i-~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i-~yv~Q~~~l~~~Tv~enI~~~~~~~~~ 750 (1560)
T PTZ00243 673 KVLLRDVSVSV-PRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSI-AYVPQQAWIMNATVRGNILFFDEEDAA 750 (1560)
T ss_pred ceeEeeeEEEE-CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeE-EEEeCCCccCCCcHHHHHHcCChhhHH
Confidence 35677888876 4678999999999999999999984321 0 112 25666531 1233333321
Q ss_pred ----------------cc--CccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHh
Q 001187 1076 ----------------RM--GAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1129)
Q Consensus 1076 ----------------ri--g~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG~A 1126 (1129)
++ |....+.....++...+++ ++.+..-..+++++||||+-.|-+...+..
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~ 820 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGER 820 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHH
Confidence 11 1111122223444444444 333333467899999999999999876543
No 364
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.00 E-value=0.0018 Score=79.83 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=30.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+-+|+++.. ..+..++|+||||+||||++|.++-
T Consensus 336 ~il~~i~l~i-~~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 336 PALRPVSFTV-PPGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred ccccceeEEE-CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5777888876 4678999999999999999999873
No 365
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=96.99 E-value=0.00062 Score=88.68 Aligned_cols=99 Identities=17% Similarity=0.266 Sum_probs=60.9
Q ss_pred ccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH----------------------HHhHcCCeecCCCcccchhhhh
Q 001187 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV----------------------ILAQVGADVPAEIFEISPVDRI 1073 (1129)
Q Consensus 1016 pNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v----------------------ilAQiG~~VPA~~a~l~~~d~i 1073 (1129)
-+.+++.. .++.+.++.||||+||||+++++.... +..++| |.|. +|.+
T Consensus 581 v~~ls~~V-~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG-yCPQ-------~d~l 651 (885)
T KOG0059|consen 581 VRGLSFAV-PPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG-YCPQ-------FDAL 651 (885)
T ss_pred hcceEEEe-cCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcc-cCCc-------hhhh
Confidence 44566665 457899999999999999999876322 233344 2333 3333
Q ss_pred hhccCccchH-------------------------------hhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 001187 1074 FVRMGAKDHI-------------------------------MAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1074 ~trig~~d~i-------------------------------~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst 1121 (1129)
+..+...+.+ ..-.++....+++ ++..+.-...+++|+|||+-.|.++
T Consensus 652 ~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP 731 (885)
T KOG0059|consen 652 WEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDP 731 (885)
T ss_pred hhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCH
Confidence 3333222222 1112344444433 5555556778999999999999987
Q ss_pred HH
Q 001187 1122 SD 1123 (1129)
Q Consensus 1122 ~D 1123 (1129)
..
T Consensus 732 ~a 733 (885)
T KOG0059|consen 732 KA 733 (885)
T ss_pred HH
Confidence 53
No 366
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.98 E-value=0.0055 Score=78.40 Aligned_cols=36 Identities=25% Similarity=0.166 Sum_probs=30.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. ..+..++|+||||+||||++|.++-+
T Consensus 488 ~iL~~isl~i-~~G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 488 NILSDISLTI-KMNSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred cceeceeEEE-CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5778888877 46789999999999999999999743
No 367
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0057 Score=70.12 Aligned_cols=115 Identities=18% Similarity=0.210 Sum_probs=73.7
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcc-----
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFE----- 1066 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~----- 1066 (1129)
..|++++.|....+. .|--+-|.+.. .++.++-|+|-||+||||+++.+. |.|-|...-.
T Consensus 321 ~~lelrnvrfay~~~------~FhvgPiNl~i-krGelvFliG~NGsGKST~~~LLt--------GL~~PqsG~I~ldg~ 385 (546)
T COG4615 321 KTLELRNVRFAYQDN------AFHVGPINLTI-KRGELVFLIGGNGSGKSTLAMLLT--------GLYQPQSGEILLDGK 385 (546)
T ss_pred cceeeeeeeeccCcc------cceecceeeEE-ecCcEEEEECCCCCcHHHHHHHHh--------cccCCCCCceeECCc
Confidence 358888888765543 24444444444 357899999999999999999888 8888865311
Q ss_pred ----------cchhhhhhhccCccchHhhccc-------chH------------------------HHHHHHHHHHHhCC
Q 001187 1067 ----------ISPVDRIFVRMGAKDHIMAGQS-------TFL------------------------TELSETALMLSSAT 1105 (1129)
Q Consensus 1067 ----------l~~~d~i~trig~~d~i~~g~S-------tF~------------------------~em~e~~~il~~at 1105 (1129)
-++|..||+..-.-|.+..+.- ++. ..-+++|.++.-.-
T Consensus 386 pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE 465 (546)
T COG4615 386 PVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE 465 (546)
T ss_pred cCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh
Confidence 1334556655433222222111 111 23356777777788
Q ss_pred CCcEEEEeCCCCCCCh
Q 001187 1106 RNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1106 ~~sLvllDElGRGTst 1121 (1129)
++.++++||...--+|
T Consensus 466 eR~Ilv~DEWAADQDP 481 (546)
T COG4615 466 ERDILVLDEWAADQDP 481 (546)
T ss_pred hCCeEEeehhhccCCh
Confidence 9999999998765554
No 368
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.94 E-value=0.00091 Score=79.21 Aligned_cols=38 Identities=39% Similarity=0.586 Sum_probs=30.5
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCC
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~ 1063 (1129)
-|+.+.. ..++=++|.||||+||||+|+.|+ |+.+|..
T Consensus 92 kd~~~El-~~g~rygLiG~nG~Gkst~L~~i~--------~~e~P~p 129 (614)
T KOG0927|consen 92 KDVTLEL-NRGRRYGLIGPNGSGKSTFLRAIA--------GREVPIP 129 (614)
T ss_pred eeeeEEe-cCCceEEEEcCCCCcHhHHHHHHh--------cCCCCCC
Confidence 3555554 245679999999999999999999 8888874
No 369
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0021 Score=75.14 Aligned_cols=84 Identities=19% Similarity=0.364 Sum_probs=52.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcC----CeecCCCcccchhhhhhh---ccCccchHhhcccchHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG----ADVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETAL 1099 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG----~~VPA~~a~l~~~d~i~t---rig~~d~i~~g~StF~~em~e~~~ 1099 (1129)
+.+++|.||||+||||++..++...++.+ | .+|.++..+++-.+++-+ .+|..-....... ++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~-G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~-------~l~~ 208 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF-GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGG-------DLQL 208 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcc-------cHHH
Confidence 56899999999999999999987655432 2 356666665555554422 2222111111111 2234
Q ss_pred HHHhCCCCcEEEEeCCCCC
Q 001187 1100 MLSSATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1100 il~~at~~sLvllDElGRG 1118 (1129)
.+.......+||||..|+.
T Consensus 209 ~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 209 ALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHHHhcCCCEEEEcCCCCC
Confidence 4555567899999999987
No 370
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.93 E-value=0.0019 Score=82.63 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=31.7
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..|-+|+++.. ..+..++|+||||+||||+++.++-.
T Consensus 494 ~~vL~~isl~i-~~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 494 VPVLKGLTFTL-HPGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CccccCceEEE-cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46778888887 46789999999999999999998743
No 371
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.93 E-value=0.0014 Score=83.50 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=30.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|+++.. +.+..++|+||||+||||++|.++-.
T Consensus 471 ~il~~i~l~i-~~G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 471 EVLSNLNLDI-KPGEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred cccccceEEE-CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4777888876 45789999999999999999999744
No 372
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.92 E-value=0.0024 Score=78.87 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=30.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.|-+|+++.. .++..++|+||+|+||||+++.++
T Consensus 349 ~vL~~isl~i-~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 349 PVLDGVSLDL-PPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred ceeecceEEE-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 4788888887 467899999999999999999987
No 373
>PLN03140 ABC transporter G family member; Provisional
Probab=96.91 E-value=0.0017 Score=88.47 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=66.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------------------HhHcCCeecCCCc---ccchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIF---EISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------------------lAQiG~~VPA~~a---~l~~~d 1071 (1129)
-+-+|+++.. ..+.+++|.||||+||||||+.++...- +.+.-.|||.+.. .+++.+
T Consensus 894 ~iL~~vs~~i-~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E 972 (1470)
T PLN03140 894 QLLREVTGAF-RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRE 972 (1470)
T ss_pred eEeeCcEEEE-ECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHH
Confidence 4677888776 4578999999999999999999976420 1111135555421 122222
Q ss_pred h------------------------hhhccCccchHhh--c---ccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 001187 1072 R------------------------IFVRMGAKDHIMA--G---QSTFLTELSE-TALMLSSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1072 ~------------------------i~trig~~d~i~~--g---~StF~~em~e-~~~il~~at~~sLvllDElGRGTst 1121 (1129)
. +...+|..+.... | ...+..++++ ++.+..-+++++++||||+..|-+.
T Consensus 973 ~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~ 1052 (1470)
T PLN03140 973 SLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1052 (1470)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 2 2333333211100 0 1234444444 4444445789999999999999987
Q ss_pred HHHH
Q 001187 1122 SDGQ 1125 (1129)
Q Consensus 1122 ~DG~ 1125 (1129)
.--.
T Consensus 1053 ~~a~ 1056 (1470)
T PLN03140 1053 RAAA 1056 (1470)
T ss_pred HHHH
Confidence 6543
No 374
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.00082 Score=73.80 Aligned_cols=91 Identities=22% Similarity=0.291 Sum_probs=63.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHHH--------------HHhHcCCeecCCCcccchh---hhhhhccCccchHhhcccc
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAV--------------ILAQVGADVPAEIFEISPV---DRIFVRMGAKDHIMAGQST 1089 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~v--------------ilAQiG~~VPA~~a~l~~~---d~i~trig~~d~i~~g~St 1089 (1129)
..+..|.|+.|+||||++++|+.+. .=++-|.|+|.+.-+++.+ -++|-++....|+.-|..-
T Consensus 24 ~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~ 103 (352)
T COG4148 24 RGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWK 103 (352)
T ss_pred CceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcc
Confidence 4699999999999999999999775 2367788999988777765 3577777777777666432
Q ss_pred hH-HHHHH-------------------------HHHHHHhCCCCcEEEEeCCCC
Q 001187 1090 FL-TELSE-------------------------TALMLSSATRNSLVVLDELGR 1117 (1129)
Q Consensus 1090 F~-~em~e-------------------------~~~il~~at~~sLvllDElGR 1117 (1129)
-+ .++.+ +|.--.-.|.+.|+||||.-.
T Consensus 104 ~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLa 157 (352)
T COG4148 104 SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLA 157 (352)
T ss_pred cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchh
Confidence 21 12222 222122258899999999754
No 375
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.90 E-value=0.0011 Score=53.97 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=37.3
Q ss_pred cceEEEecCCCCceEeEEEEeeeCCCCeEEEEccC-Cchhhhcc
Q 001187 107 RKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDL 149 (1129)
Q Consensus 107 g~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-gd~e~l~l 149 (1129)
|..|.+.|++|..||.|+|.+.++ .+...|.|.| |..|.+.+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~ 43 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPL 43 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeH
Confidence 678999999999999999999998 7779999977 99887654
No 376
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=96.89 E-value=0.0014 Score=89.83 Aligned_cols=112 Identities=16% Similarity=0.126 Sum_probs=68.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH--------hHcCCeecCCCcc--cchhhhhhh--------
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------AQVGADVPAEIFE--ISPVDRIFV-------- 1075 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil--------AQiG~~VPA~~a~--l~~~d~i~t-------- 1075 (1129)
.+-+|+++.. ..+.+++|+||||+||||||+.++...-. .++ .|||.+..- .++.|.|.-
T Consensus 440 ~~l~~i~l~i-~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~i-ayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 440 PVLKNISFKL-EKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRI-SFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred cceeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE-EEEeCCCccCCccHHHHHHhccccchHH
Confidence 4678888876 46789999999999999999999844311 111 255554211 133344321
Q ss_pred ------ccCccchH-----------hhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHHHHhh
Q 001187 1076 ------RMGAKDHI-----------MAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1076 ------rig~~d~i-----------~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~DG~AI 1127 (1129)
..+..+++ .....++...+++-..+.+ -..+++++||||+-.|-++.-+..|
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i 587 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 00111111 1112455555555444433 4578899999999999998876544
No 377
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.0021 Score=67.37 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=27.7
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+-.|++++. ..+.++++.||.|+||||+|..+|.
T Consensus 20 ~le~vsL~i-a~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 20 ALEDVSLTI-ASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred hhhccceee-cCCCEEEEEcCCCccHHHHHHHHhc
Confidence 334666665 4578999999999999999999993
No 378
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.84 E-value=0.0014 Score=56.35 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=33.4
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccC
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD 141 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Ydd 141 (1129)
-+|..|.|+|+.++.||.|+|+.++. .++|.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 38999999999999999999999998 6679999977
No 379
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.84 E-value=0.018 Score=70.61 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.-++|+||||+||||++|.+|.+
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3566999999999999999999944
No 380
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.79 E-value=0.0026 Score=76.56 Aligned_cols=84 Identities=20% Similarity=0.401 Sum_probs=51.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhH----cCCeecCCCcccchhhhhhh--c-cCccchHhhcccchHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ----VGADVPAEIFEISPVDRIFV--R-MGAKDHIMAGQSTFLTELSETAL 1099 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQ----iG~~VPA~~a~l~~~d~i~t--r-ig~~d~i~~g~StF~~em~e~~~ 1099 (1129)
+.+++|.||||+||||++..+|....+-+ + +.|+++..+++..+.+-+ + +|..-.... +-.+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV-~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~-------~~~Dl~~ 327 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKV-ALLTTDSYRIGGHEQLRIYGKILGVPVHAVK-------DAADLRL 327 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeE-EEEeCCccchhHHHHHHHHHHHhCCCeeccC-------CchhHHH
Confidence 46899999999999999999996655443 3 367877766666654322 2 221100000 0111222
Q ss_pred HHHhCCCCcEEEEeCCCCC
Q 001187 1100 MLSSATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1100 il~~at~~sLvllDElGRG 1118 (1129)
.+.......+||+|..||+
T Consensus 328 aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 328 ALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHHhccCCCeEEeCCCCcC
Confidence 3344556689999998876
No 381
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.79 E-value=0.0029 Score=86.43 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=31.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.|-+|++|.. ..+.+++|+||||+||||+++.++-+
T Consensus 399 ~vL~~isl~i-~~Ge~vaIvG~SGsGKSTLl~lL~gl 434 (1466)
T PTZ00265 399 EIYKDLNFTL-TEGKTYAFVGESGCGKSTILKLIERL 434 (1466)
T ss_pred ceeccceEEE-cCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5778888887 46789999999999999999998765
No 382
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=96.76 E-value=0.0013 Score=89.39 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=27.1
Q ss_pred ccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1016 pNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
-+|+++.. ..+++++|.||||+|||||||.++..
T Consensus 77 L~~vs~~i-~~Ge~~aIlG~nGsGKSTLLk~LaG~ 110 (1394)
T TIGR00956 77 LKPMDGLI-KPGELTVVLGRPGSGCSTLLKTIASN 110 (1394)
T ss_pred eeCCEEEE-ECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 34555544 35789999999999999999999854
No 383
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.0026 Score=75.48 Aligned_cols=85 Identities=18% Similarity=0.303 Sum_probs=54.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhH---cCCeecCCCcccchhhhhh--h-ccCccchHhhcccchHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ---VGADVPAEIFEISPVDRIF--V-RMGAKDHIMAGQSTFLTELSETALM 1100 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQ---iG~~VPA~~a~l~~~d~i~--t-rig~~d~i~~g~StF~~em~e~~~i 1100 (1129)
+.+++|.||||+||||+|+.++...++.+ -+..+.++..+++.++++. . .+|..-..... -.+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~-------~~dl~~a 263 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD-------IADLQLM 263 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCC-------HHHHHHH
Confidence 46899999999999999999987555432 3356777877887777643 2 23322111111 1112344
Q ss_pred HHhCCCCcEEEEeCCCCC
Q 001187 1101 LSSATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1101 l~~at~~sLvllDElGRG 1118 (1129)
+.......+||+|..||.
T Consensus 264 l~~l~~~d~VLIDTaGrs 281 (420)
T PRK14721 264 LHELRGKHMVLIDTVGMS 281 (420)
T ss_pred HHHhcCCCEEEecCCCCC
Confidence 455667889999997765
No 384
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.75 E-value=0.0046 Score=77.21 Aligned_cols=37 Identities=19% Similarity=0.110 Sum_probs=31.7
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..+-+|+++.. ..+..++|+||||+|||||+|.++-+
T Consensus 356 ~~il~~i~l~i-~~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 356 VPALRNINFKI-PAGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CccccCceEEe-CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45788888887 46789999999999999999999854
No 385
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0042 Score=67.49 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=31.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-|+|++.. ..+.++.|.|+.|+||||+.|.++.+
T Consensus 21 ~~l~~VS~~i-~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 21 HALNNVSLEI-ERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred hhhcceeEEe-cCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 4778899887 56889999999999999999999854
No 386
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=96.73 E-value=0.024 Score=67.17 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=28.6
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..+-+.+.+.. +.+.-++||||||+|||.+.|.++.+
T Consensus 495 ~vvv~~Ltf~i-~~G~hLLItGPNGCGKSSLfRILggL 531 (728)
T KOG0064|consen 495 DVLVPKLTFQI-EPGMHLLITGPNGCGKSSLFRILGGL 531 (728)
T ss_pred ceeecceeEEe-cCCceEEEECCCCccHHHHHHHHhcc
Confidence 44555566655 35678999999999999999999843
No 387
>PLN03140 ABC transporter G family member; Provisional
Probab=96.71 E-value=0.00098 Score=90.62 Aligned_cols=34 Identities=29% Similarity=0.259 Sum_probs=27.0
Q ss_pred ccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1016 pNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
-+|+++.. ..+++++|.||||+|||||||.++..
T Consensus 181 L~~vs~~i-~~Ge~~~llGpnGSGKSTLLk~LaG~ 214 (1470)
T PLN03140 181 LKDASGII-KPSRMTLLLGPPSSGKTTLLLALAGK 214 (1470)
T ss_pred ccCCeEEE-eCCeEEEEEcCCCCCHHHHHHHHhCC
Confidence 34555544 35789999999999999999999854
No 388
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.70 E-value=0.0025 Score=66.38 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=24.9
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1097 ~~~il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
++.+.+..+..-+.||||.-.|-|+.--++|.
T Consensus 137 ~~i~~~rf~~~GiYiLDEPEa~LSp~RQlell 168 (233)
T COG3910 137 LAIFHNRFNGQGIYILDEPEAALSPSRQLELL 168 (233)
T ss_pred HHHHHHHhccCceEEecCccccCCHHHHHHHH
Confidence 34455667889999999999999987666553
No 389
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.68 E-value=0.0056 Score=68.12 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=21.1
Q ss_pred ceEEEEecCCCchhHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+|.||||+||||+|+.|+.+
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999866
No 390
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0041 Score=63.89 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=29.6
Q ss_pred ccchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q 001187 1087 QSTFLTELSETALMLSS-ATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1087 ~StF~~em~e~~~il~~-at~~sLvllDElGRGTst 1121 (1129)
--||...|++--.|.++ .|.+.||+|||.--|-+.
T Consensus 149 PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDV 184 (258)
T COG4107 149 PRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 184 (258)
T ss_pred ccccchHHHHHHHHHHHhccCCceEEecCCCCCcch
Confidence 46899999998888776 689999999999888654
No 391
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.67 E-value=0.0024 Score=79.81 Aligned_cols=112 Identities=17% Similarity=0.278 Sum_probs=76.6
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------HhHcCCeecCCCc-------
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------LAQVGADVPAEIF------- 1065 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------lAQiG~~VPA~~a------- 1065 (1129)
..+-|+|+... ..+++++|.||.|+||||||..++--.- +-.+=+||+.+..
T Consensus 43 k~iL~~vsg~~-~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 43 KTILKGVSGTA-KPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred ceeeeCcEEEE-ecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 56778888765 4578999999999999999999875431 2233345555431
Q ss_pred ----------ccc----------hhhhhhhccCcc---chHhhc---ccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 001187 1066 ----------EIS----------PVDRIFVRMGAK---DHIMAG---QSTFLTELSETALMLSSATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1066 ----------~l~----------~~d~i~trig~~---d~i~~g---~StF~~em~e~~~il~~at~~sLvllDElGRGT 1119 (1129)
+++ .++.+...+|.. |.+..+ ++-=-.|.++++..+.-.++++++++||+..|-
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 111 245555555543 222211 112235999999999999999999999999999
Q ss_pred ChHHHH
Q 001187 1120 STSDGQ 1125 (1129)
Q Consensus 1120 st~DG~ 1125 (1129)
+.....
T Consensus 202 DS~sA~ 207 (613)
T KOG0061|consen 202 DSFSAL 207 (613)
T ss_pred chhhHH
Confidence 887653
No 392
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=96.66 E-value=0.0023 Score=87.21 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=31.2
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.-+-+|+++.. ..+.+++|.||||+||||||+.++...
T Consensus 776 ~~iL~~vs~~i-~~Ge~~aI~G~sGaGKSTLL~~Lag~~ 813 (1394)
T TIGR00956 776 RVILNNVDGWV-KPGTLTALMGASGAGKTTLLNVLAERV 813 (1394)
T ss_pred cEeeeCCEEEE-ECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 35677888776 457899999999999999999998653
No 393
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.65 E-value=0.0039 Score=71.68 Aligned_cols=111 Identities=24% Similarity=0.311 Sum_probs=70.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhH-----------------cCCeecCC-Cccc---chhhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-----------------VGADVPAE-IFEI---SPVDR 1072 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQ-----------------iG~~VPA~-~a~l---~~~d~ 1072 (1129)
++-.|+.|.. ..+.+++|+|+.|+||||+||+|.....--- +..-+|.+ ...+ .+.+.
T Consensus 397 yvlr~vNL~i-kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 397 YVLRNLNLEI-KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeceeeEe-cCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 5556666665 3467999999999999999999875432100 00113332 1222 23333
Q ss_pred -------------hhhccCccchHh-----hcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhh
Q 001187 1073 -------------IFVRMGAKDHIM-----AGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1073 -------------i~trig~~d~i~-----~g~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AI 1127 (1129)
|+.|.|.+|-+. ..+||-..|-..+|.++ |....++++||++.--++.-..-+
T Consensus 476 l~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkll--aerpn~~~iDEF~AhLD~~TA~rV 546 (593)
T COG2401 476 LRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLL--AERPNVLLIDEFAAHLDELTAVRV 546 (593)
T ss_pred HhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHH--hcCCCcEEhhhhhhhcCHHHHHHH
Confidence 455555565443 23677777777788888 466789999999987666544433
No 394
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.0042 Score=74.96 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=54.0
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcC---CeecCCCcccchhhhhhhccCccchHhhcccchH-HHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLS 1102 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG---~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~-~em~e~~~il~ 1102 (1129)
+.+++|+||+|+||||++..++....+-+.| .+|.++..+++-.+.+.+. +..- |..... ....++..+|+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~y-a~iL----gv~v~~a~d~~~L~~aL~ 424 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSY-GRQL----GIAVHEADSAESLLDLLE 424 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHh-hccc----CceeEecCcHHHHHHHHH
Confidence 4689999999999999999988765554322 3566665555544444322 1000 000000 11234455666
Q ss_pred hCCCCcEEEEeCCCCCC
Q 001187 1103 SATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1103 ~at~~sLvllDElGRGT 1119 (1129)
.....++||||..|++-
T Consensus 425 ~l~~~DLVLIDTaG~s~ 441 (559)
T PRK12727 425 RLRDYKLVLIDTAGMGQ 441 (559)
T ss_pred HhccCCEEEecCCCcch
Confidence 66678999999999973
No 395
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.022 Score=68.10 Aligned_cols=106 Identities=24% Similarity=0.232 Sum_probs=67.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------------HHhHcCCeecCCCccc--ch---
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------------ILAQVGADVPAEIFEI--SP--- 1069 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------------ilAQiG~~VPA~~a~l--~~--- 1069 (1129)
-|-..+++.. +++.=++|.|+||+||||+||++--.. -+-|+=.+||.+..-+ ++
T Consensus 366 ~iL~gvsf~I-~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~N 444 (591)
T KOG0057|consen 366 KVLKGVSFTI-PKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYN 444 (591)
T ss_pred ceecceeEEe-cCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHH
Confidence 4666777776 456779999999999999999975443 3455556899876321 11
Q ss_pred ------------hhhhhhccCccchHhh---cccchH---------HHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 001187 1070 ------------VDRIFVRMGAKDHIMA---GQSTFL---------TELSETALMLSSATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1070 ------------~d~i~trig~~d~i~~---g~StF~---------~em~e~~~il~~at~~sLvllDElGRGTs 1120 (1129)
+=++.-|.|.+|.+++ |-+|-. .|.++++.+-.-.....++|+||.-.--+
T Consensus 445 I~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD 519 (591)
T KOG0057|consen 445 IKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALD 519 (591)
T ss_pred hhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccc
Confidence 1123334444544432 323322 46677766655567888999999755443
No 396
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=96.51 E-value=0.00097 Score=68.44 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=20.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+.++=+.||||+||||+|-.+|.+
T Consensus 25 Ge~~HliGPNGaGKSTLLA~lAGm 48 (248)
T COG4138 25 GEILHLVGPNGAGKSTLLARMAGM 48 (248)
T ss_pred ceEEEEECCCCccHHHHHHHHhCC
Confidence 568899999999999999877643
No 397
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.50 E-value=0.029 Score=77.54 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=67.3
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH--------hHcCCeecCCCc--ccchhhhhhh-------
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL--------AQVGADVPAEIF--EISPVDRIFV------- 1075 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil--------AQiG~~VPA~~a--~l~~~d~i~t------- 1075 (1129)
..+-+|+++.. ..+.+++|+||||+||||+|+.++...-. .++ .|||.+.. ..++.|.|.-
T Consensus 651 ~~~l~~isl~i-~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i-~yv~Q~~~l~~~Ti~eNI~~g~~~~~~ 728 (1522)
T TIGR00957 651 PPTLNGITFSI-PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV-AYVPQQAWIQNDSLRENILFGKALNEK 728 (1522)
T ss_pred CceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEE-EEEcCCccccCCcHHHHhhcCCccCHH
Confidence 35778888876 46789999999999999999999843210 122 26666531 1123333321
Q ss_pred -------ccCccch-----------HhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChHHHHhh
Q 001187 1076 -------RMGAKDH-----------IMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1076 -------rig~~d~-----------i~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~DG~AI 1127 (1129)
..+..++ +..+-.++...+++-..+. .-..+++++||||+-.+-++.-+..|
T Consensus 729 ~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i 799 (1522)
T TIGR00957 729 YYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 799 (1522)
T ss_pred HHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence 0000111 1122244555544433333 34688999999999999888765443
No 398
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.0053 Score=77.33 Aligned_cols=85 Identities=20% Similarity=0.387 Sum_probs=56.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcC----CeecCCCcccchhhhhhh---ccCccchHhhcccchHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG----ADVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETAL 1099 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG----~~VPA~~a~l~~~d~i~t---rig~~d~i~~g~StF~~em~e~~~ 1099 (1129)
++++++.||||+||||++..++....+- -| ..|.++..+++.++++.+ ++|..-.... .-.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~-~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~-------~~~~l~~ 256 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR-EGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK-------DAADLRF 256 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH-cCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC-------CHHHHHH
Confidence 5799999999999999999999654432 23 356777777766665432 2332111111 2334556
Q ss_pred HHHhCCCCcEEEEeCCCCCC
Q 001187 1100 MLSSATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1100 il~~at~~sLvllDElGRGT 1119 (1129)
.+......++||||=.||.=
T Consensus 257 al~~~~~~D~VLIDTAGRs~ 276 (767)
T PRK14723 257 ALAALGDKHLVLIDTVGMSQ 276 (767)
T ss_pred HHHHhcCCCEEEEeCCCCCc
Confidence 66667778999999999753
No 399
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.46 E-value=0.0049 Score=63.73 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=28.8
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
|-..++|.. ..+.++-|.|..|+|||||||+|-++-
T Consensus 21 VLKGvSL~A-~~GdVisIIGsSGSGKSTfLRCiN~LE 56 (256)
T COG4598 21 VLKGVSLQA-NAGDVISIIGSSGSGKSTFLRCINFLE 56 (256)
T ss_pred hhcceeeec-CCCCEEEEecCCCCchhHHHHHHHhhc
Confidence 344566765 457899999999999999999997653
No 400
>PRK13695 putative NTPase; Provisional
Probab=96.46 E-value=0.0057 Score=64.08 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=17.9
Q ss_pred EEEEecCCCchhHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l 1049 (1129)
++|||+||+||||+++.++-
T Consensus 3 i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998653
No 401
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.42 E-value=0.0057 Score=76.18 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=65.3
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH---------------------HHHhHcCCeecCCCccc--ch
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA---------------------VILAQVGADVPAEIFEI--SP 1069 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~---------------------vilAQiG~~VPA~~a~l--~~ 1069 (1129)
..+-+|+++.. ..+..++|.||+|+||||+++.+.-. .+-.++| +||.+..-+ ++
T Consensus 342 ~~vl~~is~~i-~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~-~V~Qd~~LF~~TI 419 (567)
T COG1132 342 KPVLKDISFSI-EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG-IVSQDPLLFSGTI 419 (567)
T ss_pred CccccCceEEE-cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc-EEcccceeecccH
Confidence 46677888876 45788999999999999999987533 2557788 888664211 22
Q ss_pred hhhhh---------------hccCccchH-----------hhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChH
Q 001187 1070 VDRIF---------------VRMGAKDHI-----------MAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1070 ~d~i~---------------trig~~d~i-----------~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~ 1122 (1129)
.|.|. ..-++.|-+ .++-+.++..-++ ++.+-.-...+.++||||.-...++.
T Consensus 420 ~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~ 499 (567)
T COG1132 420 RENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTE 499 (567)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHH
Confidence 22221 111112211 1223344444444 33333335667899999987777665
Q ss_pred H
Q 001187 1123 D 1123 (1129)
Q Consensus 1123 D 1123 (1129)
-
T Consensus 500 t 500 (567)
T COG1132 500 T 500 (567)
T ss_pred h
Confidence 4
No 402
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=96.41 E-value=0.0057 Score=73.22 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=29.8
Q ss_pred CcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1012 ~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+..+-.|+++.. ..+.-++||||||+|||.|||.+|-+
T Consensus 447 g~~lie~Ls~~V-~~g~~LLItG~sG~GKtSLlRvlggL 484 (659)
T KOG0060|consen 447 GDLLIENLSLEV-PSGQNLLITGPSGCGKTSLLRVLGGL 484 (659)
T ss_pred CceeeeeeeeEe-cCCCeEEEECCCCCchhHHHHHHhcc
Confidence 345555677765 35678999999999999999999854
No 403
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=96.37 E-value=0.0045 Score=59.73 Aligned_cols=43 Identities=33% Similarity=0.518 Sum_probs=34.5
Q ss_pred CcccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchh
Q 001187 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDE 145 (1129)
Q Consensus 102 ~~~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e 145 (1129)
|.++||.||-..|-+++-||.|+|+. +....+++|..|||.+-
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~ 43 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYEC 43 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EE
T ss_pred CCcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCccc
Confidence 56899999999999777889999999 57888999999999864
No 404
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.31 E-value=0.0055 Score=67.79 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=65.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCc---------------ccchhhhhhhccC
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIF---------------EISPVDRIFVRMG 1078 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a---------------~l~~~d~i~trig 1078 (1129)
..-|||+|.. ..+.++.|.|.+|+||||+-|.+. |..=|.+.. ....+..++.++|
T Consensus 27 ~avd~Vsf~i-~~ge~~glVGESG~GKSTlgr~i~--------~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vg 97 (268)
T COG4608 27 KAVDGVSFSI-KEGETLGLVGESGCGKSTLGRLIL--------GLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVG 97 (268)
T ss_pred EEecceeEEE-cCCCEEEEEecCCCCHHHHHHHHH--------cCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhC
Confidence 5678888887 468899999999999999999998 555554321 1122344566667
Q ss_pred ccc-hHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCh
Q 001187 1079 AKD-HIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1079 ~~d-~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst 1121 (1129)
... .+..--.-|+...++ ++.+-.-+.+++|+++||+-.-.+.
T Consensus 98 l~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDv 142 (268)
T COG4608 98 LPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142 (268)
T ss_pred CCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcch
Confidence 554 333334455555544 3333334789999999998655443
No 405
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.31 E-value=0.0078 Score=68.25 Aligned_cols=83 Identities=22% Similarity=0.383 Sum_probs=50.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHh---HcCCeecCCCcccchhhhhhh--cc-CccchHhhcccchHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILA---QVGADVPAEIFEISPVDRIFV--RM-GAKDHIMAGQSTFLTELSETALM 1100 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilA---QiG~~VPA~~a~l~~~d~i~t--ri-g~~d~i~~g~StF~~em~e~~~i 1100 (1129)
+++++|+||+|+||||++..++...... +--++|.++..+.+.++.+.+ ++ |..-... . .-.++...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~----~---~~~~l~~~ 266 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVA----R---DPKELRKA 266 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceecc----C---CHHHHHHH
Confidence 5689999999999999998777554432 122467777655555554322 21 2110000 0 11234455
Q ss_pred HHhCCCCcEEEEeCCC
Q 001187 1101 LSSATRNSLVVLDELG 1116 (1129)
Q Consensus 1101 l~~at~~sLvllDElG 1116 (1129)
+......++||+|..|
T Consensus 267 l~~~~~~d~vliDt~G 282 (282)
T TIGR03499 267 LDRLRDKDLILIDTAG 282 (282)
T ss_pred HHHccCCCEEEEeCCC
Confidence 5555668999999887
No 406
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.26 E-value=0.005 Score=69.23 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.6
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.-++|.||||+|||||||.++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~ 132 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLA 132 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHh
Confidence 458999999999999999998
No 407
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.25 E-value=0.0096 Score=70.46 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=31.2
Q ss_pred CcccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1012 ~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
...|-+++.|.. ..+..+.|.||.|+|||||.|.+.
T Consensus 348 ~~pil~~isF~l-~~G~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 348 KKPILKGISFAL-QAGEALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred CCcceecceeEe-cCCceEEEECCCCccHHHHHHHHH
Confidence 357888888876 467899999999999999999987
No 408
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.24 E-value=0.0065 Score=59.64 Aligned_cols=21 Identities=48% Similarity=0.635 Sum_probs=18.8
Q ss_pred EEEEecCCCchhHHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
++|+||.|.||||+++.+|-.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 589999999999999999843
No 409
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.0092 Score=70.36 Aligned_cols=86 Identities=17% Similarity=0.315 Sum_probs=54.0
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhH--cCC---eecCCCcccchhhhh--hhc-cCccchHhhcccchHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ--VGA---DVPAEIFEISPVDRI--FVR-MGAKDHIMAGQSTFLTELSETA 1098 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQ--iG~---~VPA~~a~l~~~d~i--~tr-ig~~d~i~~g~StF~~em~e~~ 1098 (1129)
++++++.||||+||||++.-+|....+.+ -|. .|-++..+.+-.+++ |.+ +|.. +... .+ ..++.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp--v~~~-~~----~~~l~ 246 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP--VKAI-ES----FKDLK 246 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc--eEee-Cc----HHHHH
Confidence 46899999999999999999886555442 232 445555555555442 222 3332 1111 11 13344
Q ss_pred HHHHhCCCCcEEEEeCCCCCC
Q 001187 1099 LMLSSATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1099 ~il~~at~~sLvllDElGRGT 1119 (1129)
..+......++||+|+.||..
T Consensus 247 ~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 247 EEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHhCCCCEEEEcCCCCCc
Confidence 555566778999999999975
No 410
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.011 Score=66.38 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=68.1
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH------------------------HHhHcCCe-----------
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------------------------ILAQVGAD----------- 1059 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v------------------------ilAQiG~~----------- 1059 (1129)
.-+|++|.. ..+.+..|.|..|+|||||+|++-++- .=-+||+-
T Consensus 21 al~~vsL~I-~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrT 99 (339)
T COG1135 21 ALDDVSLEI-PKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRT 99 (339)
T ss_pred eeccceEEE-cCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccch
Confidence 456788876 468899999999999999999986442 22234431
Q ss_pred ------ecCCCccc------chhhhhhhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChH
Q 001187 1060 ------VPAEIFEI------SPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1060 ------VPA~~a~l------~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~ 1122 (1129)
.|=+-+.. ..+..++..+|..|....--+..++..++...|.+ -|+++.++|+||.-.--++.
T Consensus 100 V~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~ 175 (339)
T COG1135 100 VFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175 (339)
T ss_pred HHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChH
Confidence 01110110 11233455567666666666666666666555554 37999999999986665554
No 411
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.08 E-value=0.0099 Score=58.53 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
++.++|+||.|+||||+++.++-...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 45799999999999999999985543
No 412
>PRK09183 transposase/IS protein; Provisional
Probab=96.05 E-value=0.018 Score=64.58 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
+..++|+||+|+|||+++..+|...+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999986544
No 413
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.014 Score=68.31 Aligned_cols=111 Identities=23% Similarity=0.322 Sum_probs=67.0
Q ss_pred CCcccccccccCCCCCCceEEEEecCCCchhHHHHHHH---------------------HHHHHhHcCCeecCCCcc--c
Q 001187 1011 KGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC---------------------LAVILAQVGADVPAEIFE--I 1067 (1129)
Q Consensus 1011 ~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~---------------------l~vilAQiG~~VPA~~a~--l 1067 (1129)
.+..|--||++.. ..++.+.|.||.|+||||.||.+- +..+-.|||. ||.+.-- =
T Consensus 549 p~k~vl~disF~v-~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGV-VPQDtvLFNd 626 (790)
T KOG0056|consen 549 PGKPVLSDISFTV-QPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGV-VPQDTVLFND 626 (790)
T ss_pred CCCceeecceEEe-cCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCc-ccCcceeecc
Confidence 3467778888876 568899999999999999999753 2235567884 7876521 1
Q ss_pred chhhhh-hhccCccc--------------hHh------------hcccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 001187 1068 SPVDRI-FVRMGAKD--------------HIM------------AGQSTFLTELSETALMLSSATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1068 ~~~d~i-~trig~~d--------------~i~------------~g~StF~~em~e~~~il~~at~~sLvllDElGRGTs 1120 (1129)
.+++.| |.|.+++| .|+ .|.----.|=+++|.+-.-...+++|+|||--..-+
T Consensus 627 TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALD 706 (790)
T KOG0056|consen 627 TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALD 706 (790)
T ss_pred eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcC
Confidence 222222 23333321 111 111111234455554444457889999999876655
Q ss_pred hHH
Q 001187 1121 TSD 1123 (1129)
Q Consensus 1121 t~D 1123 (1129)
|.-
T Consensus 707 T~t 709 (790)
T KOG0056|consen 707 TNT 709 (790)
T ss_pred Ccc
Confidence 543
No 414
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.00 E-value=0.01 Score=66.30 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=19.8
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..+++|+||||+||||+++.++
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3589999999999999999885
No 415
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.98 E-value=0.018 Score=64.72 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=27.7
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
--||++|.. ..+.+.+|.|=.|||||||+|.+-
T Consensus 43 Gv~~~sl~v-~~GeIfViMGLSGSGKSTLvR~~N 75 (386)
T COG4175 43 GVNDASLDV-EEGEIFVIMGLSGSGKSTLVRLLN 75 (386)
T ss_pred eeccceeee-cCCeEEEEEecCCCCHHHHHHHHh
Confidence 346777776 457899999999999999999986
No 416
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.011 Score=60.44 Aligned_cols=86 Identities=26% Similarity=0.330 Sum_probs=48.0
Q ss_pred EEEEecCCCchhHHHHHHHHHHHHhHcCC-----eecCC--C-cc--cchhh------hhhhccCccchHhhcccchHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGA-----DVPAE--I-FE--ISPVD------RIFVRMGAKDHIMAGQSTFLTE 1093 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l~vilAQiG~-----~VPA~--~-a~--l~~~d------~i~trig~~d~i~~g~StF~~e 1093 (1129)
+.|||+.|+||||++.-++ -.|.+-|+ +.|-= . -+ +.++| .+|++.|.+---..-.--+...
T Consensus 8 i~ITG~PGvGKtTl~~ki~--e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIA--EKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred EEEeCCCCccHHHHHHHHH--HHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 7899999999999988776 23444443 33321 1 11 22222 2555555422111112233444
Q ss_pred HHH-HHHHHHhCCCC-cEEEEeCCCC
Q 001187 1094 LSE-TALMLSSATRN-SLVVLDELGR 1117 (1129)
Q Consensus 1094 m~e-~~~il~~at~~-sLvllDElGR 1117 (1129)
+.+ ...+|++|-.. +++|+||+|.
T Consensus 86 le~i~~~al~rA~~~aDvIIIDEIGp 111 (179)
T COG1618 86 LEEIAIPALRRALEEADVIIIDEIGP 111 (179)
T ss_pred HHHHhHHHHHHHhhcCCEEEEecccc
Confidence 443 44556666444 9999999995
No 417
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.018 Score=67.42 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=49.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCC---eecCCCcccchhhhhhh---ccCccchHhhcccchHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA---DVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETALM 1100 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~---~VPA~~a~l~~~d~i~t---rig~~d~i~~g~StF~~em~e~~~i 1100 (1129)
.++++|.||||+||||++.-+|... +.-|. ++-|+..+++-++++-+ ++|..=-. ..+ -.++.+....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v--~~d--~~~L~~aL~~ 314 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRD--EAAMTRALTY 314 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEe--cCC--HHHHHHHHHH
Confidence 4689999999999999999998643 34453 45566555555555433 22211000 000 1233322222
Q ss_pred HHhCCCCcEEEEeCCCCCC
Q 001187 1101 LSSATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1101 l~~at~~sLvllDElGRGT 1119 (1129)
++.....++||+|-.||.-
T Consensus 315 lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHhccCCCEEEEeCccccC
Confidence 2322356899999999854
No 418
>PRK04296 thymidine kinase; Provisional
Probab=95.95 E-value=0.012 Score=62.84 Aligned_cols=85 Identities=21% Similarity=0.183 Sum_probs=45.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCee--cCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHH-h
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS-S 1103 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V--PA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~-~ 1103 (1129)
+.+++||||-|+||||++..++.-...+..=+++ |+-.-+-+ ...+.+++|..-... .... ..++ ...+. .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~~-~~~~-~~~~---~~~~~~~ 75 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRIGLSREAI-PVSS-DTDI---FELIEEE 75 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCCCCcccce-EeCC-hHHH---HHHHHhh
Confidence 4689999999999999998886544333211222 32111222 345677776321100 0000 1112 11111 2
Q ss_pred CCCCcEEEEeCCCC
Q 001187 1104 ATRNSLVVLDELGR 1117 (1129)
Q Consensus 1104 at~~sLvllDElGR 1117 (1129)
.....+|+|||++.
T Consensus 76 ~~~~dvviIDEaq~ 89 (190)
T PRK04296 76 GEKIDCVLIDEAQF 89 (190)
T ss_pred CCCCCEEEEEcccc
Confidence 34668999999964
No 419
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.92 E-value=0.0079 Score=63.84 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.3
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+..++|+||||+||||+|+.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~ 46 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALL 46 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999977
No 420
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=95.90 E-value=0.022 Score=66.60 Aligned_cols=94 Identities=22% Similarity=0.253 Sum_probs=59.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCc----ccch------------h------------------h
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIF----EISP------------V------------------D 1071 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a----~l~~------------~------------------d 1071 (1129)
.+.+++|.||||-|||||.|.+| |.-=|.+.. .++. + .
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LA--------G~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ 437 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLA--------GVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKT 437 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHh--------ccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHH
Confidence 36799999999999999999998 544444321 0000 1 1
Q ss_pred hhhhccCccchHhhcccch-HHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHhh
Q 001187 1072 RIFVRMGAKDHIMAGQSTF-LTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1072 ~i~trig~~d~i~~g~StF-~~em~e~~~il~~at~~sLvllDElGRGTst~DG~AI 1127 (1129)
.|+..+...+-+....... -.||++++-++..+.+.+|.||||.-.=-+...-+..
T Consensus 438 ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~v 494 (591)
T COG1245 438 EIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494 (591)
T ss_pred hhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHH
Confidence 1222233222222222222 2589999999888999999999998765555544433
No 421
>PLN03232 ABC transporter C family member; Provisional
Probab=95.86 E-value=0.018 Score=79.41 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=65.1
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH---------hHcCCeecCCCc--ccchhhhhh-------
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL---------AQVGADVPAEIF--EISPVDRIF------- 1074 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil---------AQiG~~VPA~~a--~l~~~d~i~------- 1074 (1129)
.++-+|+++.. ..+..++|+||+|+||||+|+.+.-..-- .++ .|||.+.. .-++-|.|.
T Consensus 630 ~~vL~~inl~i-~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~I-ayv~Q~p~Lf~gTIreNI~fg~~~~~ 707 (1495)
T PLN03232 630 KPTLSDINLEI-PVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSV-AYVPQVSWIFNATVRENILFGSDFES 707 (1495)
T ss_pred CceeeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcE-EEEcCccccccccHHHHhhcCCccCH
Confidence 46778888887 46889999999999999999998732110 111 24554421 112223222
Q ss_pred -------hccCccchH-----------hhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHhh
Q 001187 1075 -------VRMGAKDHI-----------MAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1075 -------trig~~d~i-----------~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG~AI 1127 (1129)
..-+..+++ -++-.+++...++ ++.+-.-..+++++||||.-.+-+..-+..|
T Consensus 708 e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I 779 (1495)
T PLN03232 708 ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV 779 (1495)
T ss_pred HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence 001111111 1112234444443 4433334578899999999999887766543
No 422
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.018 Score=68.77 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=34.7
Q ss_pred CcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCC
Q 001187 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1129)
Q Consensus 1012 ~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~ 1063 (1129)
...+-+|+.+... .+.=+.|.|+.|+||||++..++ |.|.|..
T Consensus 350 ~~~~L~~~~l~l~-~GEkvAIlG~SGsGKSTllqLl~--------~~~~~~~ 392 (573)
T COG4987 350 QTKALKNFNLTLA-QGEKVAILGRSGSGKSTLLQLLA--------GAWDPQQ 392 (573)
T ss_pred ccchhhccceeec-CCCeEEEECCCCCCHHHHHHHHH--------hccCCCC
Confidence 3578889998873 46679999999999999999998 6666543
No 423
>PRK14974 cell division protein FtsY; Provisional
Probab=95.80 E-value=0.031 Score=64.75 Aligned_cols=90 Identities=20% Similarity=0.277 Sum_probs=48.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCee---cCCCcccchhhhhh---hccCccchHhhcccchHHHH-HHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV---PAEIFEISPVDRIF---VRMGAKDHIMAGQSTFLTEL-SETAL 1099 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V---PA~~a~l~~~d~i~---trig~~d~i~~g~StF~~em-~e~~~ 1099 (1129)
..+++++||||+||||+++.++. .+.+-|.-| -++-.+.+..+++- .++|..-......+.- .++ .+...
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp-~~v~~~ai~ 216 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADP-AAVAYDAIE 216 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCH-HHHHHHHHH
Confidence 57899999999999999999984 355666432 23333444444332 2333211000000110 111 11111
Q ss_pred HHHhCCCCcEEEEeCCCCCCC
Q 001187 1100 MLSSATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1100 il~~at~~sLvllDElGRGTs 1120 (1129)
.. .+...++||+|..||...
T Consensus 217 ~~-~~~~~DvVLIDTaGr~~~ 236 (336)
T PRK14974 217 HA-KARGIDVVLIDTAGRMHT 236 (336)
T ss_pred HH-HhCCCCEEEEECCCccCC
Confidence 11 234567999999999853
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.75 E-value=0.0067 Score=58.40 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=24.0
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+++.+.. ..+.+++|.||+|+||||+++.+.
T Consensus 6 ~~vsl~i-~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 6 HGVLVDV-YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EeeEEEE-cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3444443 246799999999999999999964
No 425
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.73 E-value=0.0022 Score=67.07 Aligned_cols=19 Identities=53% Similarity=0.808 Sum_probs=16.4
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|||+-|.||||+++-+.
T Consensus 2 i~iTG~pG~GKTTll~k~i 20 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVI 20 (168)
T ss_dssp EEEES-TTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6899999999999998865
No 426
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.71 E-value=0.02 Score=62.97 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=25.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHH-HhHcCCeecCCC
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVI-LAQVGADVPAEI 1064 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vi-lAQiG~~VPA~~ 1064 (1129)
.+.+++|+||||+||||+..+++.-.+ -..-++|+..+.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 356999999999999999766654321 112234555443
No 427
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.65 E-value=0.025 Score=57.21 Aligned_cols=23 Identities=43% Similarity=0.687 Sum_probs=20.2
Q ss_pred eEEEEecCCCchhHHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+++|+||||+||||++++++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998655
No 428
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.61 E-value=0.0079 Score=59.25 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=44.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHh-----HcC-CeecCC--CcccchhhhhhhccCccchHhhcccchHHHH-HHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILA-----QVG-ADVPAE--IFEISPVDRIFVRMGAKDHIMAGQSTFLTEL-SET 1097 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilA-----QiG-~~VPA~--~a~l~~~d~i~trig~~d~i~~g~StF~~em-~e~ 1097 (1129)
+++++|+||.|+||||+++.++--.-.. +.. +++.+. ...-.++..|...++....- .....++ ..+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHHHHH
Confidence 5789999999999999999998655433 111 133322 21233445555555543222 1122222 334
Q ss_pred HHHHHhCCCCcEEEEeCCC
Q 001187 1098 ALMLSSATRNSLVVLDELG 1116 (1129)
Q Consensus 1098 ~~il~~at~~sLvllDElG 1116 (1129)
...++.... .+|+|||+-
T Consensus 80 ~~~l~~~~~-~~lviDe~~ 97 (131)
T PF13401_consen 80 IDALDRRRV-VLLVIDEAD 97 (131)
T ss_dssp HHHHHHCTE-EEEEEETTH
T ss_pred HHHHHhcCC-eEEEEeChH
Confidence 444444333 699999973
No 429
>PF13173 AAA_14: AAA domain
Probab=95.61 E-value=0.019 Score=56.95 Aligned_cols=23 Identities=48% Similarity=0.709 Sum_probs=21.0
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+++++|+||=++||||++++++-
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~ 24 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAK 24 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999983
No 430
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.57 E-value=0.039 Score=56.98 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=72.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------H----H-------------hHcCCe---------
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------I----L-------------AQVGAD--------- 1059 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------i----l-------------AQiG~~--------- 1059 (1129)
-|--+++|.. ..+..+.|.||.|+||||||-.+|-+- + | .++|+-
T Consensus 24 ~IL~~V~L~v-~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ 102 (228)
T COG4181 24 SILKGVELVV-KRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN 102 (228)
T ss_pred eEeecceEEe-cCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc
Confidence 4555666665 356789999999999999998776431 0 1 223321
Q ss_pred --------ecCCCc---c---cchhhhhhhccCccchHhhcccchH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1060 --------VPAEIF---E---ISPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1060 --------VPA~~a---~---l~~~d~i~trig~~d~i~~g~StF~-~em~e~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
+|++-. . ...-...+.++|..+.+..---..+ .|.++++.+-.-+.++.+++-||.--.-++.-|
T Consensus 103 ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg 182 (228)
T COG4181 103 LTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATG 182 (228)
T ss_pred chhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHH
Confidence 232210 0 1112335566666655544333332 466777766667899999999999888888888
Q ss_pred Hhhh
Q 001187 1125 QAIA 1128 (1129)
Q Consensus 1125 ~AIA 1128 (1129)
-.||
T Consensus 183 ~~ia 186 (228)
T COG4181 183 DKIA 186 (228)
T ss_pred HHHH
Confidence 7776
No 431
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=95.54 E-value=0.011 Score=62.46 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+|+||||+||||+|..|.++.
T Consensus 20 g~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 599999999999999999987665
No 432
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.53 E-value=0.035 Score=62.40 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=51.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHH-hHcCCeecCCCcccchhhhhhhc---cCccchHhhcccchHHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVIL-AQVGADVPAEIFEISPVDRIFVR---MGAKDHIMAGQSTFLTELSETALML 1101 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vil-AQiG~~VPA~~a~l~~~d~i~tr---ig~~d~i~~g~StF~~em~e~~~il 1101 (1129)
++..++|.||||.||||+++.++....- .+-..++-++..+++.+.++-++ +|..-..... ..++.+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~----~~~l~~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD----EAAMTRALTYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCC----HHHHHHHHHHH
Confidence 3578999999999999999999755321 01223455555555555544332 2211000000 12333332233
Q ss_pred HhCCCCcEEEEeCCCCCC
Q 001187 1102 SSATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1102 ~~at~~sLvllDElGRGT 1119 (1129)
+.....++||+|-.||.-
T Consensus 150 ~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 150 KEEARVDYILIDTAGKNY 167 (270)
T ss_pred HhcCCCCEEEEECCCCCc
Confidence 444567999999999973
No 433
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.52 E-value=0.021 Score=68.45 Aligned_cols=87 Identities=22% Similarity=0.338 Sum_probs=51.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcC---CeecCCCcccchhhhhh--hc-cCccchHhhcccchHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIF--VR-MGAKDHIMAGQSTFLTELSETALM 1100 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG---~~VPA~~a~l~~~d~i~--tr-ig~~d~i~~g~StF~~em~e~~~i 1100 (1129)
+++++|.||||+||||++-.+|....+.+-| ++|-++..+.+.++.+. .+ +|..-.... ...++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~-------~~~~l~~~ 293 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVY-------DPKELAKA 293 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccC-------CHHhHHHH
Confidence 4589999999999999999887654422222 35556654444444332 12 221110111 11234455
Q ss_pred HHhCCCCcEEEEeCCCCCCC
Q 001187 1101 LSSATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1101 l~~at~~sLvllDElGRGTs 1120 (1129)
|......++||+|..|+.-.
T Consensus 294 l~~~~~~DlVlIDt~G~~~~ 313 (424)
T PRK05703 294 LEQLRDCDVILIDTAGRSQR 313 (424)
T ss_pred HHHhCCCCEEEEeCCCCCCC
Confidence 55556789999999998543
No 434
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.49 E-value=0.034 Score=61.17 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=30.2
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHH-hHcCCeecCCCc
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVIL-AQVGADVPAEIF 1065 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vil-AQiG~~VPA~~a 1065 (1129)
..+++++|+|++|+||||+..+++.-.+. ..-++||-.+..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 35789999999999999999999754332 334566666543
No 435
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.39 E-value=0.045 Score=63.13 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=24.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCC
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~ 1058 (1129)
+.+++|+||||+||||+++.+|.. +++.|.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~--l~~~g~ 143 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHK--YKAQGK 143 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH--HHhcCC
Confidence 568999999999999999999855 345553
No 436
>PLN03130 ABC transporter C family member; Provisional
Probab=95.39 E-value=0.028 Score=77.84 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=67.2
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHh---------HcCCeecCCCc--ccchhhhhh-------
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA---------QVGADVPAEIF--EISPVDRIF------- 1074 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilA---------QiG~~VPA~~a--~l~~~d~i~------- 1074 (1129)
.++-+|+++.. ..+..++|+||+|+||||||+.+.-..-.- ++ .|||.+.. .-++-|.|.
T Consensus 630 ~~vL~~inl~i-~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~I-ayv~Q~p~LfngTIreNI~fg~~~d~ 707 (1622)
T PLN03130 630 RPTLSNINLDV-PVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTV-AYVPQVSWIFNATVRDNILFGSPFDP 707 (1622)
T ss_pred CceeeceeEEe-cCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeE-EEEcCccccCCCCHHHHHhCCCcccH
Confidence 45778888887 468899999999999999999987433211 12 36666531 112222221
Q ss_pred -------hccCccchH-----------hhcccchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHhh
Q 001187 1075 -------VRMGAKDHI-----------MAGQSTFLTELS-ETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1075 -------trig~~d~i-----------~~g~StF~~em~-e~~~il~~at~~sLvllDElGRGTst~DG~AI 1127 (1129)
..-+..+++ -++-.+++...+ +++.+-.-..+.+++||||.-.+-+..-+-.|
T Consensus 708 e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I 779 (1622)
T PLN03130 708 ERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779 (1622)
T ss_pred HHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHH
Confidence 111111111 122233444443 44433334578899999999999988766544
No 437
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.34 E-value=0.011 Score=62.59 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=19.7
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+++|+||||+||||++|.++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~ 23 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALR 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999999996
No 438
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.34 E-value=0.025 Score=68.52 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=30.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..-+||+|.. ..+.++.|.|+.|+||||+.|.++-+
T Consensus 305 ~Av~~VSf~l-~~GE~lglVGeSGsGKSTlar~i~gL 340 (539)
T COG1123 305 KAVDDVSFDL-REGETLGLVGESGSGKSTLARILAGL 340 (539)
T ss_pred eeeeeeeeEe-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467888877 46789999999999999999999833
No 439
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.28 E-value=0.013 Score=73.17 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.1
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+++++|+||+|+||||+++.+|-
T Consensus 110 ~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999984
No 440
>PHA00729 NTP-binding motif containing protein
Probab=95.28 E-value=0.017 Score=62.91 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.2
Q ss_pred eEEEEecCCCchhHHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
-++|||+.|.||||+...++-.+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999988644
No 441
>PRK06526 transposase; Provisional
Probab=95.26 E-value=0.048 Score=60.88 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=44.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCC
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~ 1107 (1129)
.-++|+||.|.|||+++..++.-++ +-|.-|= +.-...++.++.... .. .+.. ..+......
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v~-----f~t~~~l~~~l~~~~--~~--~~~~-------~~l~~l~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRVL-----FATAAQWVARLAAAH--HA--GRLQ-------AELVKLGRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH--HCCCchh-----hhhHHHHHHHHHHHH--hc--CcHH-------HHHHHhccC
Confidence 3489999999999999999885443 4464331 122223333332111 01 1122 223334567
Q ss_pred cEEEEeCCCCCCChHH
Q 001187 1108 SLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1108 sLvllDElGRGTst~D 1123 (1129)
+||||||+|.--.+.+
T Consensus 161 dlLIIDD~g~~~~~~~ 176 (254)
T PRK06526 161 PLLIVDEVGYIPFEPE 176 (254)
T ss_pred CEEEEcccccCCCCHH
Confidence 8999999997544333
No 442
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.21 E-value=0.013 Score=61.37 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
++++|+||+|+||||++++++..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998754
No 443
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.20 E-value=0.065 Score=61.39 Aligned_cols=94 Identities=31% Similarity=0.419 Sum_probs=51.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcCCee------cCCCcccch--hhhh-----------hhccCccchHhhc
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV------PAEIFEISP--VDRI-----------FVRMGAKDHIMAG 1086 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V------PA~~a~l~~--~d~i-----------~trig~~d~i~~g 1086 (1129)
...+++|+||+|+|||||+..++-. +..-|..| |......+- -|++ |.|--.......|
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~--~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME--LRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGG 110 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccc
Confidence 4679999999999999999998865 33445444 222111110 0111 1111000001111
Q ss_pred ccchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1087 ~StF~~em~e~~~il~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
.+ ....++..++. ....++||+|=.|.|.+..+-+
T Consensus 111 ~~---~~~~~~~~~l~-~~g~D~viidT~G~~~~e~~i~ 145 (300)
T TIGR00750 111 LS---QATRELILLLD-AAGYDVIIVETVGVGQSEVDIA 145 (300)
T ss_pred hh---HHHHHHHHHHH-hCCCCEEEEeCCCCchhhhHHH
Confidence 11 12233444444 3467899999999998887643
No 444
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.17 E-value=0.034 Score=72.55 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=30.9
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..|-++++|.. +.+.++.|.||+|+||||+++.+.
T Consensus 366 v~Il~g~sl~i-~~G~~valVG~SGsGKST~i~LL~ 400 (1228)
T KOG0055|consen 366 VKILKGVSLKI-PSGQTVALVGPSGSGKSTLIQLLA 400 (1228)
T ss_pred chhhCCeEEEe-CCCCEEEEECCCCCCHHHHHHHHH
Confidence 47888888887 468899999999999999999887
No 445
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.15 E-value=0.082 Score=61.78 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=48.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCC---eecCCCcccchhhhhhhc---cCccchHhhcccchHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA---DVPAEIFEISPVDRIFVR---MGAKDHIMAGQSTFLTELSETALM 1100 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~---~VPA~~a~l~~~d~i~tr---ig~~d~i~~g~StF~~em~e~~~i 1100 (1129)
+++++|+||+|+||||++.-+|.. +..-|. +|-++..+.+-+++.-+. +|..-... . =-.++.+.-.-
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~-dp~dL~~al~~ 279 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---T-SPAELEEAVQY 279 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---C-CHHHHHHHHHH
Confidence 579999999999999999999854 233353 455665555444443322 22110000 0 12233222222
Q ss_pred HHhCCCCcEEEEeCCCCC
Q 001187 1101 LSSATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1101 l~~at~~sLvllDElGRG 1118 (1129)
++.....++||+|=.||.
T Consensus 280 l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 280 MTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHhcCCCCEEEEECCCCC
Confidence 322345688888888885
No 446
>PRK06921 hypothetical protein; Provisional
Probab=95.13 E-value=0.042 Score=61.78 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=41.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHh--HcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCC
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILA--QVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT 1105 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilA--QiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at 1105 (1129)
..++|+||.|.|||.|+..||-.++-. .-..|+++. .++..+.. .| ......+....
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~--------~l~~~l~~---------~~----~~~~~~~~~~~ 176 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV--------EGFGDLKD---------DF----DLLEAKLNRMK 176 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH--------HHHHHHHH---------HH----HHHHHHHHHhc
Confidence 468999999999999999888654422 122355531 12222110 11 11223344456
Q ss_pred CCcEEEEeCCCC
Q 001187 1106 RNSLVVLDELGR 1117 (1129)
Q Consensus 1106 ~~sLvllDElGR 1117 (1129)
..+|||||+|+.
T Consensus 177 ~~dlLiIDDl~~ 188 (266)
T PRK06921 177 KVEVLFIDDLFK 188 (266)
T ss_pred CCCEEEEecccc
Confidence 779999999966
No 447
>PF05729 NACHT: NACHT domain
Probab=95.01 E-value=0.047 Score=55.67 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
|+++|+|+-|+||||+++.++....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 5799999999999999998885543
No 448
>PLN03232 ABC transporter C family member; Provisional
Probab=94.97 E-value=0.037 Score=76.36 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=31.0
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..|-+|+++.. ..+..++|+|++|+||||+++.+.-+
T Consensus 1249 ~~vL~~isl~I-~~GekvaIVG~SGSGKSTL~~lL~rl 1285 (1495)
T PLN03232 1249 PPVLHGLSFFV-SPSEKVGVVGRTGAGKSSMLNALFRI 1285 (1495)
T ss_pred CcccccceEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35778888887 46789999999999999999998643
No 449
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.95 E-value=0.036 Score=66.24 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+++++||||-|+||||.++.++-.
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHh
Confidence 579999999999999999998844
No 450
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=94.94 E-value=0.047 Score=75.28 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=32.4
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
..|-+|+++.. ..+..++|+|++|+||||+++.+.-+.
T Consensus 1232 ~~vL~~is~~I-~~GekvaIvGrSGsGKSTLl~lL~rl~ 1269 (1490)
T TIGR01271 1232 RAVLQDLSFSV-EGGQRVGLLGRTGSGKSTLLSALLRLL 1269 (1490)
T ss_pred cceeeccEEEE-cCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 46788888887 467889999999999999999998653
No 451
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.92 E-value=0.018 Score=62.15 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.7
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..+.+++|+||||+||||+++.++-.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999853
No 452
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.89 E-value=0.019 Score=60.52 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+.+++|+||||+||||+++.++-.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999854
No 453
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=94.87 E-value=0.021 Score=64.56 Aligned_cols=35 Identities=37% Similarity=0.601 Sum_probs=27.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
|---|+.++. +.+.+|+||||+||||+|..|-.+.
T Consensus 14 f~~lditf~e---~~ttIivgpNGsGKTtvLdair~aL 48 (440)
T COG3950 14 FLNLDITFGE---SETTIIVGPNGSGKTTVLDAIRNAL 48 (440)
T ss_pred hhhceeecCC---CceEEEECCCCCChhhHHHHHHHHH
Confidence 4555677764 4689999999999999999986554
No 454
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=94.86 E-value=0.063 Score=70.03 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.9
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+.+++|||+||+|||||++.+.
T Consensus 634 ~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 634 LGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999999874
No 455
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.81 E-value=0.02 Score=59.98 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.6
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+++++|+||||+||||+++.++-
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999874
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.79 E-value=0.039 Score=59.21 Aligned_cols=20 Identities=45% Similarity=0.698 Sum_probs=18.2
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+++|+||+|+||||+|+.++
T Consensus 3 lilI~GptGSGKTTll~~ll 22 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMI 22 (198)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998754
No 457
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.72 E-value=0.027 Score=57.28 Aligned_cols=36 Identities=36% Similarity=0.460 Sum_probs=29.8
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+--||.++. +.+..++|.||.|+||||+||.+-|+-
T Consensus 17 ~lfdi~l~~-~~getlvllgpsgagkssllr~lnlle 52 (242)
T COG4161 17 ALFDITLDC-PEGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred heeeeeecC-CCCCEEEEECCCCCchHHHHHHHHHHh
Confidence 344777876 457899999999999999999998764
No 458
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.71 E-value=0.048 Score=60.70 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+..++|+||+|+||||+++.++-
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n 38 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIAN 38 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356799999999999999999874
No 459
>PTZ00243 ABC transporter; Provisional
Probab=94.69 E-value=0.046 Score=75.57 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=30.9
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..|-+|++|.. ..+..++|+|++|+||||+++.+.-+
T Consensus 1323 ~~vL~~vsf~I-~~GekVaIVGrTGSGKSTLl~lLlrl 1359 (1560)
T PTZ00243 1323 PLVLRGVSFRI-APREKVGIVGRTGSGKSTLLLTFMRM 1359 (1560)
T ss_pred CceeecceEEE-CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35778888887 46789999999999999999998643
No 460
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.68 E-value=0.033 Score=64.03 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.0
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+..++|+||||+||||+|+.++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~ 165 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLV 165 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999876
No 461
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.68 E-value=0.087 Score=56.56 Aligned_cols=89 Identities=24% Similarity=0.390 Sum_probs=50.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcCC---eecCCCcccchhhhh--hh-ccCccchHhhcccchHHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGA---DVPAEIFEISPVDRI--FV-RMGAKDHIMAGQSTFLTELSETALML 1101 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG~---~VPA~~a~l~~~d~i--~t-rig~~d~i~~g~StF~~em~e~~~il 1101 (1129)
+++++.||+|+||||.+=-+|.-..+. |- .|.++..+++-++++ |. .+|..=......+. ..++ +...+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~-~~~~--~~~~l 76 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD-PAEI--AREAL 76 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC-HHHH--HHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh-hHHH--HHHHH
Confidence 689999999999999988887555444 53 456777777777764 22 22321000000000 1111 22233
Q ss_pred HhC--CCCcEEEEeCCCCCCCh
Q 001187 1102 SSA--TRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1102 ~~a--t~~sLvllDElGRGTst 1121 (1129)
... ...++||+|-.||.-.-
T Consensus 77 ~~~~~~~~D~vlIDT~Gr~~~d 98 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTAGRSPRD 98 (196)
T ss_dssp HHHHHTTSSEEEEEE-SSSSTH
T ss_pred HHHhhcCCCEEEEecCCcchhh
Confidence 322 34679999999998543
No 462
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=94.67 E-value=0.072 Score=73.16 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=30.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.|-+|++|.. ..+..++|+||+|+||||+++.+.
T Consensus 1182 ~vL~~lsl~i-~~G~~vAIVG~SGsGKSTl~~LL~ 1215 (1466)
T PTZ00265 1182 PIYKDLTFSC-DSKKTTAIVGETGSGKSTVMSLLM 1215 (1466)
T ss_pred ccccCeeEEE-cCCCEEEEECCCCCCHHHHHHHHH
Confidence 5788899887 467899999999999999999987
No 463
>PLN03130 ABC transporter C family member; Provisional
Probab=94.64 E-value=0.054 Score=75.13 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=30.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.|-+|+++.. ..+..++|.|++|+||||+++.+.-+
T Consensus 1253 ~VL~~is~~I-~~GekVaIVGrSGSGKSTLl~lL~rl 1288 (1622)
T PLN03130 1253 PVLHGLSFEI-SPSEKVGIVGRTGAGKSSMLNALFRI 1288 (1622)
T ss_pred ceecceeEEE-cCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 5778888887 45789999999999999999998743
No 464
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.62 E-value=0.032 Score=68.29 Aligned_cols=30 Identities=33% Similarity=0.597 Sum_probs=24.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcCCee
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V 1060 (1129)
..++++||||.|+||||++|.+| -.+|.-|
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La-----~elg~~v 73 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLA-----KELGFEV 73 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHH-----HHhCCee
Confidence 35799999999999999999987 3446544
No 465
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.58 E-value=0.14 Score=53.46 Aligned_cols=87 Identities=21% Similarity=0.291 Sum_probs=46.7
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHhHcCC---eecCCCcccchhhhh---hhccCccchHhhcccchHHHHHH--HHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGA---DVPAEIFEISPVDRI---FVRMGAKDHIMAGQSTFLTELSE--TALM 1100 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~vilAQiG~---~VPA~~a~l~~~d~i---~trig~~d~i~~g~StF~~em~e--~~~i 1100 (1129)
+++++||.|+||||+.+.++. .+++.|. +|.++..+.+..+++ ..++|.. -+......-..++.. +..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~--~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL--YLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVP-VFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeE-EEecCCCCCHHHHHHHHHHHH
Confidence 689999999999999888774 4556663 445554333333332 1222211 000000011122211 1111
Q ss_pred HHhCCCCcEEEEeCCCCCCC
Q 001187 1101 LSSATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1101 l~~at~~sLvllDElGRGTs 1120 (1129)
......+||+|..|++.-
T Consensus 79 --~~~~~d~viiDt~g~~~~ 96 (173)
T cd03115 79 --REENFDVVIVDTAGRLQI 96 (173)
T ss_pred --HhCCCCEEEEECcccchh
Confidence 235678999999998754
No 466
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=0.11 Score=60.36 Aligned_cols=51 Identities=35% Similarity=0.348 Sum_probs=33.9
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCC-------cccchhhhhh
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-------FEISPVDRIF 1074 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~-------a~l~~~d~i~ 1074 (1129)
-|+--|+-++-+ .-+.|.||||.||||||+.+. |-.-|.+. .+++.||+-+
T Consensus 602 LFkkldFGiDmd---SRiaIVGPNGVGKSTlLkLL~--------Gkl~P~~GE~RKnhrL~iG~FdQh~ 659 (807)
T KOG0066|consen 602 LFKKLDFGIDMD---SRIAIVGPNGVGKSTLLKLLI--------GKLDPNDGELRKNHRLRIGWFDQHA 659 (807)
T ss_pred hhhccccccccc---ceeEEECCCCccHHHHHHHHh--------cCCCCCcchhhccceeeeechhhhh
Confidence 355555555432 348899999999999999876 65556542 3466666543
No 467
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=0.053 Score=67.07 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=29.6
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.-|-+|++|+. ..+.++.|.||+||||||+...+-
T Consensus 481 ~~Vlk~lsfti-~pGe~vALVGPSGsGKSTiasLL~ 515 (716)
T KOG0058|consen 481 VPVLKNLSFTI-RPGEVVALVGPSGSGKSTIASLLL 515 (716)
T ss_pred chhhcCceeee-CCCCEEEEECCCCCCHHHHHHHHH
Confidence 45778888887 468899999999999999987764
No 468
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.50 E-value=0.059 Score=63.44 Aligned_cols=85 Identities=25% Similarity=0.232 Sum_probs=49.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHh-HcCCeecCCCcccchhhhhhhccCcc-chHhhcccchHHHHHHHHHHHHh
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA-QVGADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALMLSS 1103 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilA-QiG~~VPA~~a~l~~~d~i~trig~~-d~i~~g~StF~~em~e~~~il~~ 1103 (1129)
.+.+++|+|++|.||||++.|++....-. .-.+||-.+... ..+.....|+|.. +++.--..+.+. ++...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~-~qi~~Ra~rlg~~~~~l~l~~e~~le---~I~~~i~- 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESP-EQIKLRADRLGISTENLYLLAETNLE---DILASIE- 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCH-HHHHHHHHHcCCCcccEEEEccCcHH---HHHHHHH-
Confidence 46799999999999999999998543221 123566655321 2222233456642 333211122223 3333333
Q ss_pred CCCCcEEEEeCC
Q 001187 1104 ATRNSLVVLDEL 1115 (1129)
Q Consensus 1104 at~~sLvllDEl 1115 (1129)
....++|+||++
T Consensus 156 ~~~~~lVVIDSI 167 (372)
T cd01121 156 ELKPDLVIIDSI 167 (372)
T ss_pred hcCCcEEEEcch
Confidence 346789999997
No 469
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.49 E-value=0.026 Score=61.73 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=19.4
Q ss_pred eEEEEecCCCchhHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+++|.|||||||||+++.++-.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 470
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.46 E-value=0.038 Score=55.75 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=21.8
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..+.++-|.||.|+||||+|.-++..
T Consensus 26 a~GeivtlMGPSGcGKSTLls~~~G~ 51 (213)
T COG4136 26 AKGEIVTLMGPSGCGKSTLLSWMIGA 51 (213)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhh
Confidence 35789999999999999999877643
No 471
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.36 E-value=0.035 Score=60.96 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
...+++|+||||||||||++.++-
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998873
No 472
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.35 E-value=0.074 Score=63.81 Aligned_cols=88 Identities=19% Similarity=0.272 Sum_probs=49.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCC---eecCCCcccchhhhh---hhccCccchHhhcccchHHHHHH-HHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA---DVPAEIFEISPVDRI---FVRMGAKDHIMAGQSTFLTELSE-TAL 1099 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~---~VPA~~a~l~~~d~i---~trig~~d~i~~g~StF~~em~e-~~~ 1099 (1129)
..+++++|++|+||||++.-+|. .+++-|. .|.|+..+.+..+++ ..++|..= .+.+ -..+..+ +..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~---~~~~-~~~d~~~i~~~ 168 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF---YGDP-DNKDAVEIAKE 168 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE---EecC-CccCHHHHHHH
Confidence 46899999999999999998884 3455563 234443333333322 22333210 0000 0001111 234
Q ss_pred HHHhCCCCcEEEEeCCCCCCC
Q 001187 1100 MLSSATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1100 il~~at~~sLvllDElGRGTs 1120 (1129)
++..+....+||+|..||--.
T Consensus 169 al~~~~~~DvVIIDTAGr~~~ 189 (437)
T PRK00771 169 GLEKFKKADVIIVDTAGRHAL 189 (437)
T ss_pred HHHHhhcCCEEEEECCCcccc
Confidence 455555569999999999753
No 473
>PRK12377 putative replication protein; Provisional
Probab=94.27 E-value=0.065 Score=59.59 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=44.5
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCc
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNS 1108 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~s 1108 (1129)
.++|+||.|.|||.|+..||-.++ +-|..|- +--+..++..+... ...+. ....+++.....+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~-----~i~~~~l~~~l~~~--~~~~~--------~~~~~l~~l~~~d 165 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVI-----VVTVPDVMSRLHES--YDNGQ--------SGEKFLQELCKVD 165 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--HcCCCeE-----EEEHHHHHHHHHHH--Hhccc--------hHHHHHHHhcCCC
Confidence 589999999999999999987654 3354331 11112233322111 00110 1124566678889
Q ss_pred EEEEeCCCCCC
Q 001187 1109 LVVLDELGRGT 1119 (1129)
Q Consensus 1109 LvllDElGRGT 1119 (1129)
||||||||.--
T Consensus 166 LLiIDDlg~~~ 176 (248)
T PRK12377 166 LLVLDEIGIQR 176 (248)
T ss_pred EEEEcCCCCCC
Confidence 99999997643
No 474
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.25 E-value=0.11 Score=60.14 Aligned_cols=91 Identities=23% Similarity=0.329 Sum_probs=50.8
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCee------cCCC----cccchh---------hhhhhccCccchHhhcc
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV------PAEI----FEISPV---------DRIFVRMGAKDHIMAGQ 1087 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V------PA~~----a~l~~~---------d~i~trig~~d~i~~g~ 1087 (1129)
..++.||||+|+|||||+..++-.. ...|.-| |... +-++-- +.+|.|.-+.-.-..|.
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l--~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHL--IEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 5689999999999999999876443 3546544 3222 111111 11233322221122222
Q ss_pred cchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1088 STFLTELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1088 StF~~em~e~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+... .+....+. +..-.+||+|=.|.|.+..+
T Consensus 134 a~~~---~~~~~~~~-~~g~d~viieT~Gv~qs~~~ 165 (332)
T PRK09435 134 ARKT---RETMLLCE-AAGYDVILVETVGVGQSETA 165 (332)
T ss_pred HHHH---HHHHHHHh-ccCCCEEEEECCCCccchhH
Confidence 2222 22333333 45678999999999977655
No 475
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.23 E-value=0.15 Score=54.93 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=31.1
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHh-HcCCeecCCC
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILA-QVGADVPAEI 1064 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilA-QiG~~VPA~~ 1064 (1129)
..++++.|+||+|+|||++.-+++....-. +-.+||-.+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 357899999999999999999888665432 2356888775
No 476
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.09 E-value=0.1 Score=57.96 Aligned_cols=81 Identities=25% Similarity=0.380 Sum_probs=46.0
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCC
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~ 1107 (1129)
..++|.|+.|.|||+++..||-.+ .+.|..| .-++ +..++.++. ++|...-.....+++.....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v----~~it-~~~l~~~l~---------~~~~~~~~~~~~~l~~l~~~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNEL--LLRGKSV----LIIT-VADIMSAMK---------DTFSNSETSEEQLLNDLSNV 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HhcCCeE----EEEE-HHHHHHHHH---------HHHhhccccHHHHHHHhccC
Confidence 358999999999999999888654 3345333 1111 122332221 11210000112344555678
Q ss_pred cEEEEeCCCCCCChHHH
Q 001187 1108 SLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1108 sLvllDElGRGTst~DG 1124 (1129)
+||||||+|.-..+..+
T Consensus 164 dlLvIDDig~~~~s~~~ 180 (244)
T PRK07952 164 DLLVIDEIGVQTESRYE 180 (244)
T ss_pred CEEEEeCCCCCCCCHHH
Confidence 99999999986544433
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.06 E-value=0.036 Score=59.20 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred eEEEEecCCCchhHHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+++|+||+|+||||+++.++-+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999987654
No 478
>PRK06893 DNA replication initiation factor; Validated
Probab=94.05 E-value=0.071 Score=58.57 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=22.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vil 1053 (1129)
+.+.|.||.|.|||++++.+|-.+.-
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999966443
No 479
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=94.01 E-value=0.046 Score=59.30 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+.+.+|+||||+|||+++-.|+.+
T Consensus 24 ~~~~~i~G~NGsGKS~ileAi~~~ 47 (220)
T PF02463_consen 24 PGLNVIVGPNGSGKSNILEAIEFV 47 (220)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999754
No 480
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=93.97 E-value=0.032 Score=66.62 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=25.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLR 1045 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr 1045 (1129)
.+-.+|++.. ..+.+++|+||+|+||||+||
T Consensus 20 ~vL~~Vsl~i-~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 20 RILVKFNKEL-PSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHhCCceee-cCCCEEEEECCCCCCHHHHHh
Confidence 3456677765 457899999999999999999
No 481
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=93.96 E-value=0.29 Score=58.06 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=36.4
Q ss_pred ccceEEEecCCCCceEeEEEEeeeCCC------CeEEEEccCCc---hhhhccC
Q 001187 106 LRKRIRVYWPLDKAWYEGCVKSFDKEC------NKHLVQYDDGE---DELLDLG 150 (1129)
Q Consensus 106 vg~rv~v~Wp~d~~~y~g~v~~~~~~~------~~h~v~Yddgd---~e~l~l~ 150 (1129)
||.+|.++|..|..||.++|....... ..+.|.|..=+ .|||..+
T Consensus 56 VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~ 109 (450)
T PLN00104 56 VGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLE 109 (450)
T ss_pred cCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHh
Confidence 999999999999999999999988733 46889996544 5666533
No 482
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.94 E-value=0.042 Score=62.40 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=19.9
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..+++|.||||+||||++|.+..
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998753
No 483
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.91 E-value=0.12 Score=56.53 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=25.7
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHh
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilA 1054 (1129)
..+.++.|+||+|+||||++.+++..+.+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~ 46 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLP 46 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCc
Confidence 356899999999999999999999776553
No 484
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=93.91 E-value=0.047 Score=57.82 Aligned_cols=50 Identities=28% Similarity=0.232 Sum_probs=32.6
Q ss_pred cEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 993 ~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.|++.+++.-.-+. ..+--|+.++.. .+.-.++.|+||+||||+||.++.
T Consensus 13 aievsgl~f~y~~~------dP~~~Dfnldlp-~gsRcLlVGaNGaGKtTlLKiLsG 62 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVS------DPIFFDFNLDLP-AGSRCLLVGANGAGKTTLLKILSG 62 (291)
T ss_pred eEEEeccEEecccC------CceEEEEeeccC-CCceEEEEecCCCchhhhHHHhcC
Confidence 46666665433221 234445666553 344578999999999999998863
No 485
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.83 E-value=0.046 Score=61.79 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+||||||+||||+|..|+++.
T Consensus 22 ~~~~i~G~nGsGKS~il~ai~~~~ 45 (276)
T cd03241 22 GLTVLTGETGAGKSILLDALSLLL 45 (276)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 589999999999999999988764
No 486
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.81 E-value=0.046 Score=61.58 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+|+||||+||||+|..+.++.
T Consensus 22 ~~~~i~G~NGsGKS~ll~Ai~~~~ 45 (270)
T cd03242 22 GVTVLVGENAQGKTNLLEAISLLA 45 (270)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998765
No 487
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=93.76 E-value=0.19 Score=59.23 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=71.3
Q ss_pred cccccccccCC---CCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCC--------------------------
Q 001187 1013 EFVPNDITIGG---HGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE-------------------------- 1063 (1129)
Q Consensus 1013 ~fvpNdi~l~~---~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~-------------------------- 1063 (1129)
.|-+|.+.|-. ...+.++.|.||||-||||.||.++ |--+|--
T Consensus 83 RYg~NgFkL~~LP~pr~G~V~GilG~NGiGKsTalkILa--------Gel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~ 154 (591)
T COG1245 83 RYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILA--------GELKPNLGRYEDPPSWDEVIKRFRGTELQNYFK 154 (591)
T ss_pred eccCCceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHh--------CccccCCCCCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 46666666521 1347899999999999999999988 4444420
Q ss_pred ---------------------------------CcccchhhhhhhccCccchHhhcccchH-HHHHHHHHHHHhCCCCcE
Q 001187 1064 ---------------------------------IFEISPVDRIFVRMGAKDHIMAGQSTFL-TELSETALMLSSATRNSL 1109 (1129)
Q Consensus 1064 ---------------------------------~a~l~~~d~i~trig~~d~i~~g~StF~-~em~e~~~il~~at~~sL 1109 (1129)
-..-+.+|.+..+++...-+....|..+ .|++++|.+...+...++
T Consensus 155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADv 234 (591)
T COG1245 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADV 234 (591)
T ss_pred HHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCE
Confidence 0223456666677776655555555543 588888888877888899
Q ss_pred EEEeCCCCCCChHHHH
Q 001187 1110 VVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1110 vllDElGRGTst~DG~ 1125 (1129)
.++||+-.=-+...-+
T Consensus 235 Y~FDEpsSyLDi~qRl 250 (591)
T COG1245 235 YFFDEPSSYLDIRQRL 250 (591)
T ss_pred EEEcCCcccccHHHHH
Confidence 9999986544444433
No 488
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=93.75 E-value=0.018 Score=62.16 Aligned_cols=22 Identities=32% Similarity=0.606 Sum_probs=0.0
Q ss_pred eEEEEecCCCchhHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+.+|+||||+||||+|+.+.++
T Consensus 1 i~viiG~N~sGKS~il~ai~~~ 22 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFL 22 (303)
T ss_dssp ----------------------
T ss_pred CCcccccccccccccccccccc
Confidence 4689999999999999999866
No 489
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=93.70 E-value=0.11 Score=71.84 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=30.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.|-+|+++.. ..+..++|+|++|+||||+++.+.-+
T Consensus 1300 ~vL~~is~~I-~~GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1300 LVLRHINVTI-HGGEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred ccccceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5778888887 46789999999999999999998644
No 490
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.68 E-value=0.053 Score=56.42 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=25.3
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
-|-++.|. .+..+.|.|-||+|||||.|+++.
T Consensus 30 ~~vSFtL~---~~QTlaiIG~NGSGKSTLakMlaG 61 (267)
T COG4167 30 KPVSFTLR---EGQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred cceEEEec---CCcEEEEEccCCCcHhHHHHHHhc
Confidence 34445554 357899999999999999999993
No 491
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.63 E-value=0.053 Score=58.15 Aligned_cols=25 Identities=36% Similarity=0.584 Sum_probs=22.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+++|+||+|+||||++++++-.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3679999999999999999999853
No 492
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=93.56 E-value=0.14 Score=58.30 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=40.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCcc---chHhhcc----cchHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAK---DHIMAGQ----STFLTELSETAL 1099 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~---d~i~~g~----StF~~em~e~~~ 1099 (1129)
.++++|||++|+||||+++.+. +.|.++- +...+.++..+....... +.+.-.. ..|..++.+...
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~------~~g~~~~-d~~~~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~ 78 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE------DLGYYCV-DNLPPSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALD 78 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH------HcCCeEE-CCcCHHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHH
Confidence 4689999999999999999884 7787663 222333444332222111 1111111 125556666666
Q ss_pred HHHhC
Q 001187 1100 MLSSA 1104 (1129)
Q Consensus 1100 il~~a 1104 (1129)
.|+.+
T Consensus 79 ~L~~~ 83 (288)
T PRK05416 79 ELRER 83 (288)
T ss_pred HHHHc
Confidence 66655
No 493
>PRK08181 transposase; Validated
Probab=93.55 E-value=0.12 Score=58.16 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=46.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCC
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~ 1107 (1129)
.-++|+||.|.|||-|+..+|..++- -|..|- +--...++..+.... .. .....+++.....
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~--~g~~v~-----f~~~~~L~~~l~~a~--~~---------~~~~~~l~~l~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIE--NGWRVL-----FTRTTDLVQKLQVAR--RE---------LQLESAIAKLDKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHH--cCCcee-----eeeHHHHHHHHHHHH--hC---------CcHHHHHHHHhcC
Confidence 35899999999999999998865543 354321 111233443332110 00 0122334444567
Q ss_pred cEEEEeCCCCCCChHHH
Q 001187 1108 SLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1108 sLvllDElGRGTst~DG 1124 (1129)
+|+||||+|.-..+..+
T Consensus 169 dLLIIDDlg~~~~~~~~ 185 (269)
T PRK08181 169 DLLILDDLAYVTKDQAE 185 (269)
T ss_pred CEEEEeccccccCCHHH
Confidence 89999999986554433
No 494
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.53 E-value=0.1 Score=54.70 Aligned_cols=34 Identities=32% Similarity=0.301 Sum_probs=24.9
Q ss_pred EEEEecCCCchhHHHHHHHHHHHHh-HcCCeecCC
Q 001187 1030 ILLTGPNMGGKSTLLRQVCLAVILA-QVGADVPAE 1063 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l~vilA-QiG~~VPA~ 1063 (1129)
++|+||.|+||||+.-+++.-.+.. .-.+||-.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 7899999999999999988765432 123466544
No 495
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.45 E-value=0.18 Score=59.86 Aligned_cols=90 Identities=20% Similarity=0.209 Sum_probs=50.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcC---CeecCCCcc--cchhhhhhhccCccchHhhcccchHHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFE--ISPVDRIFVRMGAKDHIMAGQSTFLTELSETALML 1101 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG---~~VPA~~a~--l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il 1101 (1129)
...++|+||.|.||||+++.++--.--...+ +||.|.... ..++..|+..++.......|. ++..-+..+...+
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~l 133 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGL-SFDELFDKIAEYL 133 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHHHHHH
Confidence 3468999999999999999997433211111 244443221 234455666554322111222 2333334444555
Q ss_pred HhCCCCcEEEEeCCCC
Q 001187 1102 SSATRNSLVVLDELGR 1117 (1129)
Q Consensus 1102 ~~at~~sLvllDElGR 1117 (1129)
......-+|+|||+-.
T Consensus 134 ~~~~~~~viviDE~d~ 149 (394)
T PRK00411 134 DERDRVLIVALDDINY 149 (394)
T ss_pred HhcCCEEEEEECCHhH
Confidence 5455567899999865
No 496
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.39 E-value=0.06 Score=58.05 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
++.+++|+||+|+||||+.+.++-.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998854
No 497
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.38 E-value=0.063 Score=52.19 Aligned_cols=20 Identities=40% Similarity=0.757 Sum_probs=18.7
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+++|+||.|+||||+.+.++
T Consensus 1 vI~I~G~~gsGKST~a~~La 20 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELA 20 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999987
No 498
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.28 E-value=0.28 Score=55.37 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=25.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCee
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V 1060 (1129)
.++++++||||+||||++.-+|. .+++.|.-|
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V 103 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSV 103 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEE
Confidence 46899999999999999998884 346777543
No 499
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.27 E-value=0.063 Score=56.41 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.3
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..+++|+||+|+||||+++.++
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999987
No 500
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.26 E-value=0.059 Score=63.13 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.8
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+||||+||||+|+.++
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl 155 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAII 155 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999998865
Done!