Query 001187
Match_columns 1129
No_of_seqs 550 out of 2728
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 15:29:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o8b_B DNA mismatch repair pro 100.0 3E-147 1E-151 1412.1 77.4 829 278-1128 18-890 (1022)
2 3thx_B DNA mismatch repair pro 100.0 1E-125 4E-130 1194.6 72.3 739 325-1128 11-774 (918)
3 1wb9_A DNA mismatch repair pro 100.0 6E-119 2E-123 1126.4 68.4 692 326-1128 9-708 (800)
4 1ewq_A DNA mismatch repair pro 100.0 1E-114 3E-119 1082.0 63.5 660 325-1128 11-677 (765)
5 3thx_A DNA mismatch repair pro 100.0 1E-109 4E-114 1052.7 63.3 725 325-1128 14-763 (934)
6 1vpl_A ABC transporter, ATP-bi 98.5 1.8E-07 6E-12 102.8 7.8 109 1014-1124 29-182 (256)
7 2pcj_A ABC transporter, lipopr 98.4 1.9E-07 6.4E-12 100.5 6.9 108 1014-1123 18-175 (224)
8 3gfo_A Cobalt import ATP-bindi 98.4 3.3E-07 1.1E-11 101.6 7.6 111 1014-1126 22-181 (275)
9 3tui_C Methionine import ATP-b 98.4 3.5E-07 1.2E-11 104.9 7.3 131 991-1126 22-201 (366)
10 4g1u_C Hemin import ATP-bindin 98.3 2.7E-07 9.2E-12 101.9 5.6 113 1013-1126 24-185 (266)
11 1sgw_A Putative ABC transporte 98.3 6.2E-07 2.1E-11 95.7 7.8 107 1014-1123 23-168 (214)
12 3tif_A Uncharacterized ABC tra 98.3 8.2E-07 2.8E-11 96.2 7.7 111 1014-1126 19-183 (235)
13 2nq2_C Hypothetical ABC transp 98.3 7.8E-07 2.7E-11 97.4 7.6 109 1014-1124 19-164 (253)
14 2qi9_C Vitamin B12 import ATP- 98.3 3.5E-07 1.2E-11 99.9 4.7 109 1015-1125 15-170 (249)
15 1b0u_A Histidine permease; ABC 98.3 7.8E-07 2.7E-11 97.9 7.4 110 1014-1125 20-190 (262)
16 3d31_A Sulfate/molybdate ABC t 98.3 5.6E-07 1.9E-11 102.9 6.0 107 1015-1123 15-162 (348)
17 3fvq_A Fe(3+) IONS import ATP- 98.3 6.8E-07 2.3E-11 102.4 6.6 110 1013-1124 17-174 (359)
18 2olj_A Amino acid ABC transpor 98.3 7.5E-07 2.6E-11 98.1 6.6 109 1014-1124 38-195 (263)
19 2ff7_A Alpha-hemolysin translo 98.3 1.2E-06 4.2E-11 95.5 8.0 110 1014-1125 23-182 (247)
20 2ixe_A Antigen peptide transpo 98.2 1E-06 3.4E-11 97.5 7.1 110 1014-1125 33-193 (271)
21 2yyz_A Sugar ABC transporter, 98.2 8.7E-07 3E-11 101.7 6.6 108 1014-1123 17-168 (359)
22 2pjz_A Hypothetical protein ST 98.2 6.6E-07 2.3E-11 98.5 4.5 109 1014-1125 19-165 (263)
23 1g6h_A High-affinity branched- 98.2 1.5E-06 5.2E-11 95.3 7.1 109 1014-1124 21-189 (257)
24 2ihy_A ABC transporter, ATP-bi 98.2 6.6E-07 2.3E-11 99.4 4.2 109 1014-1124 35-197 (279)
25 2d2e_A SUFC protein; ABC-ATPas 98.2 1.6E-06 5.5E-11 94.8 6.9 110 1014-1124 17-179 (250)
26 2onk_A Molybdate/tungstate ABC 98.2 9.4E-07 3.2E-11 96.0 4.8 105 1016-1123 15-161 (240)
27 1ji0_A ABC transporter; ATP bi 98.2 1.4E-06 4.8E-11 94.6 6.2 110 1014-1125 20-176 (240)
28 1z47_A CYSA, putative ABC-tran 98.2 2.6E-06 8.7E-11 97.6 8.5 108 1014-1123 29-180 (355)
29 2pze_A Cystic fibrosis transme 98.1 1.5E-06 5E-11 93.8 5.8 110 1014-1125 22-167 (229)
30 2yz2_A Putative ABC transporte 98.1 2.2E-06 7.4E-11 94.6 6.7 109 1014-1124 21-174 (266)
31 2zu0_C Probable ATP-dependent 98.1 3.1E-06 1.1E-10 93.4 7.6 112 1013-1125 33-201 (267)
32 1ye8_A Protein THEP1, hypothet 98.1 1.5E-06 5.1E-11 90.0 4.5 88 1029-1116 2-109 (178)
33 1v43_A Sugar-binding transport 98.1 1E-06 3.6E-11 101.5 3.6 36 1014-1050 25-60 (372)
34 2cbz_A Multidrug resistance-as 98.1 3.9E-06 1.3E-10 90.9 7.9 110 1014-1125 19-164 (237)
35 3rlf_A Maltose/maltodextrin im 98.1 3.9E-06 1.3E-10 96.8 8.2 109 1013-1123 16-168 (381)
36 2it1_A 362AA long hypothetical 98.1 3.5E-06 1.2E-10 96.8 7.6 108 1014-1123 17-168 (362)
37 1oxx_K GLCV, glucose, ABC tran 98.1 3.6E-06 1.2E-10 96.5 7.2 106 1015-1122 20-174 (353)
38 2bbs_A Cystic fibrosis transme 98.0 2.8E-06 9.5E-11 94.9 5.2 109 1015-1125 53-196 (290)
39 1g29_1 MALK, maltose transport 98.0 6.6E-06 2.3E-10 94.9 7.8 108 1014-1123 17-174 (372)
40 1mv5_A LMRA, multidrug resista 98.0 3.7E-06 1.3E-10 91.4 5.1 36 1014-1050 16-51 (243)
41 2ghi_A Transport protein; mult 98.0 5.9E-06 2E-10 90.8 6.5 110 1014-1125 34-192 (260)
42 3ozx_A RNAse L inhibitor; ATP 97.9 1.7E-05 6E-10 95.8 9.7 113 1013-1125 8-175 (538)
43 3gd7_A Fusion complex of cysti 97.9 4.3E-06 1.5E-10 97.0 3.8 123 993-1122 19-189 (390)
44 1yqt_A RNAse L inhibitor; ATP- 97.9 1.7E-05 5.7E-10 96.1 9.1 107 1015-1123 37-193 (538)
45 3nh6_A ATP-binding cassette SU 97.8 7E-06 2.4E-10 92.2 4.0 112 1013-1126 67-228 (306)
46 3bk7_A ABC transporter ATP-bin 97.8 3.2E-05 1.1E-09 94.9 9.8 110 1014-1125 106-265 (607)
47 4gp7_A Metallophosphoesterase; 97.8 1.4E-05 4.7E-10 81.9 5.5 21 1026-1046 8-28 (171)
48 3j16_B RLI1P; ribosome recycli 97.8 3.6E-05 1.2E-09 94.3 8.9 55 1072-1126 204-259 (608)
49 2iw3_A Elongation factor 3A; a 97.7 3.4E-05 1.2E-09 98.3 7.8 110 1013-1123 448-583 (986)
50 2i3b_A HCR-ntpase, human cance 97.7 9.9E-06 3.4E-10 84.7 1.5 28 1028-1057 2-29 (189)
51 3ozx_A RNAse L inhibitor; ATP 97.6 6.2E-05 2.1E-09 91.0 8.4 101 1026-1126 293-423 (538)
52 3j16_B RLI1P; ribosome recycli 97.6 6.6E-05 2.3E-09 91.9 7.7 111 1016-1127 363-506 (608)
53 3qf4_A ABC transporter, ATP-bi 97.5 0.00021 7.2E-09 87.4 11.1 113 1013-1127 356-518 (587)
54 1yqt_A RNAse L inhibitor; ATP- 97.5 0.00014 4.9E-09 87.9 9.5 98 1026-1124 311-437 (538)
55 3bk7_A ABC transporter ATP-bin 97.5 0.00012 4.2E-09 89.7 8.5 99 1026-1125 381-508 (607)
56 2jeo_A Uridine-cytidine kinase 97.5 0.00012 4.2E-09 79.2 7.5 37 1013-1050 12-48 (245)
57 3b5x_A Lipid A export ATP-bind 97.5 0.00011 3.8E-09 89.9 7.8 112 1013-1126 356-518 (582)
58 3ec2_A DNA replication protein 97.5 2.4E-05 8.2E-10 80.4 1.4 25 1027-1051 38-62 (180)
59 2ehv_A Hypothetical protein PH 97.5 0.00015 5.3E-09 77.8 7.8 28 1025-1052 28-55 (251)
60 3qf4_B Uncharacterized ABC tra 97.5 0.00017 5.8E-09 88.5 8.7 113 1013-1127 368-530 (598)
61 2l8d_A Lamin-B receptor; DNA b 97.4 0.00016 5.4E-09 60.3 5.3 44 105-148 11-54 (66)
62 4a82_A Cystic fibrosis transme 97.4 0.00019 6.4E-09 87.8 8.5 110 1013-1124 354-513 (578)
63 2dig_A Lamin-B receptor; tudor 97.4 0.00019 6.6E-09 59.9 5.5 51 105-157 14-64 (68)
64 3b60_A Lipid A export ATP-bind 97.3 0.00011 3.8E-09 89.8 5.2 111 1013-1125 356-517 (582)
65 3ux8_A Excinuclease ABC, A sub 97.3 0.00023 7.9E-09 88.5 8.1 29 1015-1044 33-61 (670)
66 2yl4_A ATP-binding cassette SU 97.3 0.00014 4.7E-09 89.3 5.9 109 1014-1124 358-519 (595)
67 4a74_A DNA repair and recombin 97.3 0.00012 4E-09 77.7 4.0 27 1026-1052 24-50 (231)
68 1cr0_A DNA primase/helicase; R 97.3 0.00025 8.6E-09 78.8 6.5 37 1016-1053 25-61 (296)
69 2kjq_A DNAA-related protein; s 97.3 0.00026 8.7E-09 70.9 5.8 26 1027-1052 36-61 (149)
70 3ux8_A Excinuclease ABC, A sub 97.2 0.00045 1.5E-08 86.0 8.6 44 992-1048 326-369 (670)
71 2iw3_A Elongation factor 3A; a 97.2 0.0002 6.8E-09 91.4 5.3 36 1014-1050 687-722 (986)
72 1nlf_A Regulatory protein REPA 97.2 0.00028 9.6E-09 77.8 5.8 26 1026-1051 29-54 (279)
73 2cvh_A DNA repair and recombin 97.2 0.00069 2.4E-08 71.2 8.4 95 1025-1121 18-120 (220)
74 2ygr_A Uvrabc system protein A 97.2 0.00078 2.7E-08 85.8 10.0 44 992-1048 646-689 (993)
75 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00054 1.8E-08 72.4 7.3 27 1026-1052 22-48 (235)
76 2eyu_A Twitching motility prot 97.1 0.00021 7.1E-09 78.5 3.6 26 1026-1051 24-49 (261)
77 2r6f_A Excinuclease ABC subuni 97.0 0.00077 2.6E-08 85.5 8.4 44 992-1048 628-671 (972)
78 3p8d_A Medulloblastoma antigen 97.0 0.00059 2E-08 58.4 5.0 45 103-149 6-50 (67)
79 1znw_A Guanylate kinase, GMP k 97.0 0.00028 9.4E-09 74.3 3.7 37 1012-1051 8-44 (207)
80 3aez_A Pantothenate kinase; tr 97.0 0.00099 3.4E-08 75.0 8.3 26 1026-1051 89-114 (312)
81 1n0w_A DNA repair protein RAD5 97.0 0.00036 1.2E-08 74.5 4.2 95 1026-1121 23-134 (243)
82 1htw_A HI0065; nucleotide-bind 97.0 0.00024 8.3E-09 72.0 2.6 37 1014-1051 21-57 (158)
83 3pih_A Uvrabc system protein A 97.0 0.0016 5.5E-08 82.9 10.4 44 992-1048 588-631 (916)
84 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.00022 7.6E-09 84.5 2.2 33 1018-1051 130-162 (460)
85 2g3r_A Tumor suppressor P53-bi 96.9 0.00063 2.2E-08 63.9 4.7 47 101-148 2-48 (123)
86 2equ_A PHD finger protein 20-l 96.9 0.00083 2.8E-08 58.9 4.8 51 103-157 9-59 (74)
87 3jvv_A Twitching mobility prot 96.9 0.0004 1.4E-08 79.6 3.2 24 1027-1050 123-146 (356)
88 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00015 5E-09 82.5 -0.6 33 1015-1048 160-192 (330)
89 3qii_A PHD finger protein 20; 96.8 0.0011 3.7E-08 59.1 5.0 45 102-148 20-64 (85)
90 3sop_A Neuronal-specific septi 96.8 0.00093 3.2E-08 73.6 5.5 23 1029-1051 4-26 (270)
91 1z6g_A Guanylate kinase; struc 96.7 0.00056 1.9E-08 72.8 3.1 34 1017-1051 14-47 (218)
92 1mhn_A SurviVal motor neuron p 96.7 0.0018 6.1E-08 54.3 5.1 46 105-150 5-51 (59)
93 3hr8_A Protein RECA; alpha and 96.6 0.0033 1.1E-07 71.9 8.6 90 1025-1119 59-152 (356)
94 3tr0_A Guanylate kinase, GMP k 96.6 0.00092 3.2E-08 69.5 3.4 24 1027-1050 7-30 (205)
95 2vf7_A UVRA2, excinuclease ABC 96.5 0.0015 5.3E-08 82.4 5.4 42 992-1046 501-542 (842)
96 2zr9_A Protein RECA, recombina 96.5 0.0042 1.4E-07 71.0 8.5 93 1025-1120 59-153 (349)
97 3lnc_A Guanylate kinase, GMP k 96.5 0.00073 2.5E-08 72.2 1.9 33 1017-1050 18-51 (231)
98 3a00_A Guanylate kinase, GMP k 96.5 0.001 3.6E-08 68.6 2.9 23 1028-1050 2-24 (186)
99 2yhs_A FTSY, cell division pro 96.5 0.0041 1.4E-07 73.8 8.2 33 1018-1051 285-317 (503)
100 2ldm_A Uncharacterized protein 95.5 0.00044 1.5E-08 61.4 0.0 45 104-150 7-51 (81)
101 3e70_C DPA, signal recognition 96.5 0.00089 3.1E-08 75.9 2.5 26 1026-1051 128-153 (328)
102 3b85_A Phosphate starvation-in 96.5 0.0012 4.2E-08 69.8 3.4 24 1027-1050 22-45 (208)
103 2px0_A Flagellar biosynthesis 96.5 0.00084 2.9E-08 75.0 2.1 87 1026-1120 104-196 (296)
104 1vma_A Cell division protein F 96.4 0.0038 1.3E-07 70.0 7.2 30 1026-1057 103-132 (306)
105 1pzn_A RAD51, DNA repair and r 96.4 0.0027 9.1E-08 72.6 5.9 27 1025-1051 129-155 (349)
106 4a4f_A SurviVal of motor neuro 96.3 0.0042 1.4E-07 53.0 5.1 48 103-150 8-56 (64)
107 4f4c_A Multidrug resistance pr 96.3 0.028 9.5E-07 75.0 15.7 51 993-1048 415-465 (1321)
108 2eqj_A Metal-response element- 96.3 0.0048 1.6E-07 52.1 5.2 45 105-150 15-59 (66)
109 1zp6_A Hypothetical protein AT 96.3 0.002 6.7E-08 66.3 3.5 23 1026-1048 8-30 (191)
110 3kta_A Chromosome segregation 96.3 0.0022 7.4E-08 65.5 3.8 23 1029-1051 28-50 (182)
111 1ssf_A Transformation related 96.2 0.0039 1.3E-07 61.1 5.1 49 99-148 4-52 (156)
112 1s96_A Guanylate kinase, GMP k 96.2 0.0022 7.5E-08 68.4 3.7 25 1026-1050 15-39 (219)
113 3s6w_A Tudor domain-containing 96.2 0.0049 1.7E-07 50.6 4.9 45 106-150 4-49 (54)
114 3asz_A Uridine kinase; cytidin 96.2 0.0026 8.8E-08 66.6 3.9 25 1026-1050 5-29 (211)
115 3szr_A Interferon-induced GTP- 96.2 0.0016 5.6E-08 79.8 2.8 26 1029-1062 47-72 (608)
116 3c8u_A Fructokinase; YP_612366 96.2 0.0027 9.1E-08 66.7 3.9 26 1026-1051 21-46 (208)
117 1g5v_A SurviVal motor neuron p 96.1 0.0058 2E-07 55.4 5.4 48 103-150 10-58 (88)
118 1lvg_A Guanylate kinase, GMP k 96.1 0.002 7E-08 67.3 2.8 24 1027-1050 4-27 (198)
119 2v9p_A Replication protein E1; 96.1 0.002 6.7E-08 72.2 2.8 47 1015-1063 115-161 (305)
120 3g5u_A MCG1178, multidrug resi 96.0 0.0029 9.9E-08 84.2 4.1 107 1014-1122 404-560 (1284)
121 2bdt_A BH3686; alpha-beta prot 96.0 0.0027 9.3E-08 65.3 2.9 21 1028-1048 3-23 (189)
122 4eun_A Thermoresistant glucoki 95.9 0.0046 1.6E-07 64.4 4.4 25 1026-1050 28-52 (200)
123 3g5u_A MCG1178, multidrug resi 95.9 0.0056 1.9E-07 81.5 6.1 36 1014-1050 1047-1082(1284)
124 1ls1_A Signal recognition part 95.9 0.0083 2.8E-07 66.9 6.7 31 1027-1059 98-128 (295)
125 1kgd_A CASK, peripheral plasma 95.9 0.0036 1.2E-07 64.2 3.4 23 1027-1049 5-27 (180)
126 2dr3_A UPF0273 protein PH0284; 95.8 0.0075 2.5E-07 64.3 5.7 28 1026-1053 22-49 (247)
127 3lda_A DNA repair protein RAD5 95.8 0.0048 1.6E-07 71.7 4.4 94 1025-1119 176-286 (400)
128 1in4_A RUVB, holliday junction 95.8 0.0079 2.7E-07 68.1 6.0 23 1028-1050 52-74 (334)
129 3b9q_A Chloroplast SRP recepto 95.7 0.0068 2.3E-07 67.8 4.7 26 1026-1051 99-124 (302)
130 1zu4_A FTSY; GTPase, signal re 95.6 0.022 7.7E-07 64.1 8.7 31 1026-1058 104-134 (320)
131 1f2t_A RAD50 ABC-ATPase; DNA d 95.6 0.0063 2.2E-07 60.7 3.7 24 1028-1051 24-47 (149)
132 1kag_A SKI, shikimate kinase I 95.6 0.0049 1.7E-07 62.2 3.0 22 1028-1049 5-26 (173)
133 3euj_A Chromosome partition pr 95.6 0.005 1.7E-07 73.1 3.4 33 1017-1051 21-53 (483)
134 2j41_A Guanylate kinase; GMP, 95.6 0.0058 2E-07 63.4 3.5 23 1027-1049 6-28 (207)
135 3tau_A Guanylate kinase, GMP k 95.6 0.0061 2.1E-07 64.1 3.5 23 1026-1048 7-29 (208)
136 4aby_A DNA repair protein RECN 95.5 0.0026 8.9E-08 74.0 0.6 33 1017-1051 52-84 (415)
137 1sq5_A Pantothenate kinase; P- 95.4 0.0077 2.7E-07 67.4 4.0 25 1026-1050 79-103 (308)
138 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.0063 2.1E-07 69.9 3.3 25 1028-1052 24-48 (365)
139 2gza_A Type IV secretion syste 95.4 0.0033 1.1E-07 72.1 1.0 31 1017-1048 166-196 (361)
140 3vaa_A Shikimate kinase, SK; s 95.4 0.007 2.4E-07 63.0 3.4 37 1012-1049 11-47 (199)
141 1knq_A Gluconate kinase; ALFA/ 95.4 0.0075 2.6E-07 61.1 3.3 24 1027-1050 8-31 (175)
142 1fnn_A CDC6P, cell division co 95.4 0.016 5.6E-07 66.0 6.6 86 1029-1118 46-137 (389)
143 2bbw_A Adenylate kinase 4, AK4 95.4 0.0071 2.4E-07 65.2 3.2 22 1027-1048 27-48 (246)
144 2og2_A Putative signal recogni 95.3 0.01 3.6E-07 67.9 4.7 26 1026-1051 156-181 (359)
145 2m0o_A PHD finger protein 1; t 95.3 0.059 2E-06 46.5 7.8 45 105-150 28-72 (79)
146 3pnw_C Tudor domain-containing 95.3 0.02 6.7E-07 50.7 5.2 48 103-150 17-65 (77)
147 3uie_A Adenylyl-sulfate kinase 95.2 0.0088 3E-07 62.2 3.5 26 1026-1051 24-49 (200)
148 2w58_A DNAI, primosome compone 95.2 0.0096 3.3E-07 61.8 3.7 24 1028-1051 55-78 (202)
149 2qby_A CDC6 homolog 1, cell di 95.2 0.015 5E-07 66.1 5.5 89 1026-1117 44-139 (386)
150 3kl4_A SRP54, signal recogniti 95.2 0.012 4.2E-07 68.9 4.8 87 1027-1119 97-192 (433)
151 1jbk_A CLPB protein; beta barr 95.2 0.041 1.4E-06 55.3 8.3 24 1027-1050 43-66 (195)
152 1tf7_A KAIC; homohexamer, hexa 95.2 0.008 2.7E-07 72.4 3.4 39 1014-1053 26-65 (525)
153 1tf7_A KAIC; homohexamer, hexa 95.2 0.033 1.1E-06 67.1 8.7 88 1026-1118 280-382 (525)
154 4e22_A Cytidylate kinase; P-lo 95.2 0.012 4E-07 63.9 4.3 22 1027-1048 27-48 (252)
155 2d9t_A Tudor domain-containing 95.2 0.021 7.3E-07 50.6 5.1 48 103-150 9-57 (78)
156 2b8t_A Thymidine kinase; deoxy 95.1 0.018 6.3E-07 61.4 5.4 84 1026-1116 11-99 (223)
157 2r6a_A DNAB helicase, replicat 95.0 0.032 1.1E-06 65.9 7.8 30 1025-1054 201-230 (454)
158 3qks_A DNA double-strand break 95.0 0.014 4.6E-07 61.4 3.9 25 1028-1052 24-48 (203)
159 1u94_A RECA protein, recombina 95.0 0.028 9.7E-07 64.2 6.8 93 1025-1120 61-155 (356)
160 1p9r_A General secretion pathw 95.0 0.013 4.4E-07 68.6 4.0 24 1026-1049 166-189 (418)
161 1nij_A Hypothetical protein YJ 94.9 0.01 3.5E-07 66.7 3.0 22 1027-1048 4-25 (318)
162 2qag_B Septin-6, protein NEDD5 94.9 0.0085 2.9E-07 70.0 2.3 34 1016-1050 30-65 (427)
163 1tq4_A IIGP1, interferon-induc 94.8 0.0055 1.9E-07 71.5 0.4 21 1029-1049 71-91 (413)
164 2obl_A ESCN; ATPase, hydrolase 94.8 0.0098 3.4E-07 67.8 2.4 35 1014-1050 60-94 (347)
165 2qm8_A GTPase/ATPase; G protei 94.8 0.013 4.5E-07 66.5 3.4 34 1017-1051 46-79 (337)
166 1rj9_A FTSY, signal recognitio 94.8 0.016 5.5E-07 64.8 4.0 26 1026-1051 101-126 (304)
167 2orw_A Thymidine kinase; TMTK, 94.8 0.01 3.4E-07 61.4 2.2 26 1027-1052 3-28 (184)
168 2p65_A Hypothetical protein PF 94.8 0.029 1E-06 56.4 5.7 24 1027-1050 43-66 (187)
169 1v5w_A DMC1, meiotic recombina 94.7 0.024 8.2E-07 64.4 5.3 94 1025-1118 120-231 (343)
170 2vp4_A Deoxynucleoside kinase; 94.7 0.012 4.1E-07 62.8 2.6 25 1026-1050 19-43 (230)
171 1njg_A DNA polymerase III subu 94.7 0.034 1.2E-06 58.0 6.1 22 1028-1049 46-67 (250)
172 1rz3_A Hypothetical protein rb 94.6 0.017 5.8E-07 60.2 3.6 25 1026-1050 21-45 (201)
173 3bos_A Putative DNA replicatio 94.6 0.028 9.6E-07 59.2 5.2 25 1027-1051 52-76 (242)
174 2o5v_A DNA replication and rep 94.6 0.017 5.7E-07 66.2 3.5 23 1029-1051 28-50 (359)
175 1jjv_A Dephospho-COA kinase; P 94.5 0.016 5.4E-07 60.4 3.1 22 1028-1049 3-24 (206)
176 2if2_A Dephospho-COA kinase; a 94.5 0.017 5.8E-07 60.0 3.2 21 1029-1049 3-23 (204)
177 3ney_A 55 kDa erythrocyte memb 94.4 0.019 6.6E-07 60.1 3.4 23 1026-1048 18-40 (197)
178 2ewv_A Twitching motility prot 94.4 0.021 7.1E-07 65.7 4.0 25 1026-1050 135-159 (372)
179 4f4c_A Multidrug resistance pr 94.4 0.025 8.7E-07 75.4 5.3 34 1014-1048 1093-1126(1321)
180 1e69_A Chromosome segregation 94.3 0.017 5.7E-07 65.1 2.9 22 1029-1050 26-47 (322)
181 2dpy_A FLII, flagellum-specifi 94.3 0.018 6.1E-07 67.8 3.1 35 1014-1050 146-180 (438)
182 3b9p_A CG5977-PA, isoform A; A 94.3 0.039 1.3E-06 60.7 5.7 23 1027-1049 54-76 (297)
183 1lw7_A Transcriptional regulat 94.3 0.023 7.8E-07 65.1 3.8 35 1013-1050 159-193 (365)
184 1xp8_A RECA protein, recombina 94.2 0.081 2.8E-06 60.7 8.3 92 1025-1119 72-165 (366)
185 2z43_A DNA repair and recombin 94.2 0.041 1.4E-06 62.0 5.7 92 1026-1117 106-214 (324)
186 3llm_A ATP-dependent RNA helic 94.2 0.034 1.2E-06 59.4 4.8 27 1027-1053 76-102 (235)
187 3h4m_A Proteasome-activating n 94.1 0.051 1.7E-06 59.4 6.2 23 1027-1049 51-73 (285)
188 3qkt_A DNA double-strand break 94.1 0.027 9.2E-07 63.9 4.0 24 1028-1051 24-47 (339)
189 4hcz_A PHD finger protein 1; p 94.1 0.071 2.4E-06 43.7 5.2 43 106-149 6-48 (58)
190 2v1u_A Cell division control p 93.9 0.068 2.3E-06 60.6 7.0 89 1027-1118 44-142 (387)
191 1cke_A CK, MSSA, protein (cyti 93.9 0.026 9E-07 59.4 3.3 22 1028-1049 6-27 (227)
192 1qhl_A Protein (cell division 93.9 0.0056 1.9E-07 65.6 -2.0 24 1028-1051 28-51 (227)
193 3tqc_A Pantothenate kinase; bi 93.9 0.031 1.1E-06 63.0 3.9 24 1027-1050 92-115 (321)
194 2pez_A Bifunctional 3'-phospho 93.9 0.028 9.7E-07 57.1 3.3 24 1026-1049 4-27 (179)
195 3dm5_A SRP54, signal recogniti 93.9 0.046 1.6E-06 64.1 5.4 31 1027-1059 100-130 (443)
196 1sxj_E Activator 1 40 kDa subu 93.9 0.026 9E-07 63.7 3.3 21 1030-1050 39-59 (354)
197 2vhj_A Ntpase P4, P4; non- hyd 93.9 0.12 4E-06 58.1 8.4 35 1026-1062 122-156 (331)
198 3m6a_A ATP-dependent protease 93.9 0.044 1.5E-06 66.2 5.5 25 1027-1051 108-132 (543)
199 1w1w_A Structural maintenance 93.8 0.029 9.9E-07 65.7 3.6 25 1027-1051 26-50 (430)
200 3t61_A Gluconokinase; PSI-biol 93.8 0.027 9.2E-07 58.4 3.0 23 1027-1049 18-40 (202)
201 2x8a_A Nuclear valosin-contain 93.8 0.026 8.8E-07 62.1 2.9 20 1030-1049 47-66 (274)
202 3auy_A DNA double-strand break 93.8 0.035 1.2E-06 63.7 4.1 25 1028-1052 26-50 (371)
203 1svm_A Large T antigen; AAA+ f 93.7 0.023 8E-07 65.4 2.6 32 1017-1049 160-191 (377)
204 2oap_1 GSPE-2, type II secreti 93.7 0.026 9E-07 67.6 3.0 22 1027-1048 260-281 (511)
205 2qt1_A Nicotinamide riboside k 93.6 0.037 1.3E-06 57.7 3.5 22 1027-1048 21-42 (207)
206 1l8q_A Chromosomal replication 93.3 0.023 7.9E-07 63.6 1.6 25 1027-1051 37-61 (324)
207 2yv5_A YJEQ protein; hydrolase 93.3 0.037 1.3E-06 61.7 3.2 22 1027-1048 165-186 (302)
208 2qor_A Guanylate kinase; phosp 93.3 0.038 1.3E-06 57.6 3.1 23 1026-1048 11-33 (204)
209 3pfi_A Holliday junction ATP-d 93.3 0.069 2.4E-06 59.9 5.4 64 1028-1119 56-119 (338)
210 2z4s_A Chromosomal replication 93.2 0.071 2.4E-06 62.7 5.6 24 1028-1051 131-154 (440)
211 1lv7_A FTSH; alpha/beta domain 93.2 0.073 2.5E-06 57.3 5.2 21 1029-1049 47-67 (257)
212 2i1q_A DNA repair and recombin 93.1 0.056 1.9E-06 60.6 4.3 30 1025-1054 96-125 (322)
213 3io5_A Recombination and repai 93.1 0.14 4.8E-06 57.4 7.4 91 1025-1119 27-124 (333)
214 3cf0_A Transitional endoplasmi 93.1 0.071 2.4E-06 59.2 5.0 23 1027-1049 49-71 (301)
215 1u0l_A Probable GTPase ENGC; p 93.1 0.043 1.5E-06 61.2 3.3 22 1027-1048 169-190 (301)
216 1ixz_A ATP-dependent metallopr 93.0 0.041 1.4E-06 59.2 2.9 20 1030-1049 52-71 (254)
217 2yvu_A Probable adenylyl-sulfa 92.8 0.06 2.1E-06 55.0 3.8 25 1026-1050 12-36 (186)
218 3fdr_A Tudor and KH domain-con 92.8 0.11 3.8E-06 47.5 5.1 47 103-150 27-74 (94)
219 3cm0_A Adenylate kinase; ATP-b 92.7 0.05 1.7E-06 55.3 3.0 22 1027-1048 4-25 (186)
220 3t15_A Ribulose bisphosphate c 92.7 0.12 4.1E-06 57.3 6.1 24 1027-1050 36-59 (293)
221 2ce7_A Cell division protein F 92.7 0.11 3.8E-06 61.6 6.2 21 1029-1049 51-71 (476)
222 3nwj_A ATSK2; P loop, shikimat 92.6 0.027 9.3E-07 61.2 0.8 35 1014-1049 33-70 (250)
223 2rcn_A Probable GTPase ENGC; Y 92.6 0.055 1.9E-06 61.8 3.3 22 1027-1048 215-236 (358)
224 2xau_A PRE-mRNA-splicing facto 92.5 0.061 2.1E-06 67.8 4.0 24 1027-1050 109-132 (773)
225 1y63_A LMAJ004144AAA protein; 92.5 0.07 2.4E-06 54.6 3.8 23 1026-1048 9-31 (184)
226 1iy2_A ATP-dependent metallopr 92.5 0.052 1.8E-06 59.4 2.9 21 1030-1050 76-96 (278)
227 3kb2_A SPBC2 prophage-derived 92.4 0.061 2.1E-06 53.6 3.1 20 1029-1048 3-22 (173)
228 2qz4_A Paraplegin; AAA+, SPG7, 92.4 0.14 4.9E-06 54.8 6.3 22 1028-1049 40-61 (262)
229 4eaq_A DTMP kinase, thymidylat 92.4 0.073 2.5E-06 56.8 3.9 24 1026-1049 25-48 (229)
230 3pvs_A Replication-associated 92.4 0.2 6.9E-06 58.9 8.0 22 1028-1049 51-72 (447)
231 1oix_A RAS-related protein RAB 92.4 0.059 2E-06 55.3 3.0 21 1029-1049 31-51 (191)
232 1pui_A ENGB, probable GTP-bind 92.3 0.053 1.8E-06 56.1 2.4 23 1026-1048 25-47 (210)
233 1ypw_A Transitional endoplasmi 92.2 0.074 2.5E-06 67.4 4.0 23 1027-1049 238-260 (806)
234 3k1j_A LON protease, ATP-depen 92.0 0.035 1.2E-06 68.0 0.9 24 1027-1050 60-83 (604)
235 2f9l_A RAB11B, member RAS onco 92.0 0.066 2.2E-06 55.1 2.8 21 1029-1049 7-27 (199)
236 2ze6_A Isopentenyl transferase 92.0 0.068 2.3E-06 57.9 3.1 21 1028-1048 2-22 (253)
237 2orv_A Thymidine kinase; TP4A 92.0 0.14 4.7E-06 54.8 5.2 79 1027-1115 19-99 (234)
238 1xx6_A Thymidine kinase; NESG, 91.9 0.15 5.3E-06 52.9 5.5 83 1026-1117 7-92 (191)
239 3lw7_A Adenylate kinase relate 91.9 0.095 3.2E-06 52.0 3.8 26 1028-1059 2-27 (179)
240 3eie_A Vacuolar protein sortin 91.9 0.18 6.2E-06 56.4 6.5 23 1027-1049 51-73 (322)
241 2xk0_A Polycomb protein PCL; t 91.8 0.37 1.3E-05 40.8 6.4 43 105-150 17-59 (69)
242 3cr8_A Sulfate adenylyltranfer 91.7 0.061 2.1E-06 65.0 2.5 25 1026-1050 368-392 (552)
243 2f1r_A Molybdopterin-guanine d 91.7 0.052 1.8E-06 55.4 1.5 23 1028-1050 3-25 (171)
244 4ad8_A DNA repair protein RECN 91.7 0.042 1.4E-06 66.0 0.9 24 1028-1051 61-84 (517)
245 1ly1_A Polynucleotide kinase; 91.7 0.087 3E-06 52.9 3.2 22 1028-1049 3-24 (181)
246 4fcw_A Chaperone protein CLPB; 91.6 0.14 4.8E-06 56.5 5.1 23 1029-1051 49-71 (311)
247 2ius_A DNA translocase FTSK; n 91.6 0.23 7.9E-06 59.3 7.2 75 1028-1102 168-251 (512)
248 2eqk_A Tudor domain-containing 91.6 0.2 6.7E-06 44.8 4.9 46 105-150 23-68 (85)
249 3syl_A Protein CBBX; photosynt 91.6 0.25 8.4E-06 54.5 7.0 24 1028-1051 68-91 (309)
250 1hqc_A RUVB; extended AAA-ATPa 91.5 0.13 4.3E-06 57.2 4.6 22 1028-1049 39-60 (324)
251 1qhx_A CPT, protein (chloramph 91.5 0.095 3.3E-06 52.8 3.2 21 1028-1048 4-24 (178)
252 1m7g_A Adenylylsulfate kinase; 91.4 0.1 3.5E-06 54.6 3.5 24 1026-1049 24-47 (211)
253 1t9h_A YLOQ, probable GTPase E 91.4 0.044 1.5E-06 61.4 0.6 23 1027-1049 173-195 (307)
254 2qgz_A Helicase loader, putati 91.3 0.081 2.8E-06 59.2 2.7 25 1028-1052 153-177 (308)
255 2rhm_A Putative kinase; P-loop 91.3 0.11 3.8E-06 52.9 3.5 22 1027-1048 5-26 (193)
256 1via_A Shikimate kinase; struc 91.3 0.091 3.1E-06 53.0 2.8 20 1029-1048 6-25 (175)
257 3d8b_A Fidgetin-like protein 1 91.2 0.16 5.4E-06 57.9 5.1 22 1027-1048 117-138 (357)
258 1d2n_A N-ethylmaleimide-sensit 91.2 0.17 5.8E-06 55.0 5.1 24 1027-1050 64-87 (272)
259 1xwi_A SKD1 protein; VPS4B, AA 91.1 0.17 6E-06 56.7 5.2 23 1027-1049 45-67 (322)
260 1vht_A Dephospho-COA kinase; s 91.1 0.11 3.7E-06 54.5 3.3 22 1027-1048 4-25 (218)
261 2diq_A Tudor and KH domain-con 91.1 0.15 5.1E-06 48.1 3.9 51 104-157 33-84 (110)
262 3n70_A Transport activator; si 91.0 0.071 2.4E-06 52.4 1.7 20 1029-1048 26-45 (145)
263 2qag_C Septin-7; cell cycle, c 90.9 0.094 3.2E-06 61.2 2.9 28 1014-1048 25-52 (418)
264 2qnr_A Septin-2, protein NEDD5 90.9 0.096 3.3E-06 58.3 2.9 20 1030-1049 21-40 (301)
265 1sxj_D Activator 1 41 kDa subu 90.9 0.13 4.4E-06 57.7 4.0 23 1030-1052 61-83 (353)
266 1kht_A Adenylate kinase; phosp 90.9 0.12 3.9E-06 52.6 3.2 23 1027-1049 3-25 (192)
267 1ex7_A Guanylate kinase; subst 90.9 0.11 3.7E-06 53.8 3.0 20 1028-1047 2-21 (186)
268 1q3t_A Cytidylate kinase; nucl 90.8 0.13 4.3E-06 54.9 3.5 24 1026-1049 15-38 (236)
269 1gvn_B Zeta; postsegregational 90.7 0.12 4.2E-06 57.1 3.4 23 1026-1048 32-54 (287)
270 2p5t_B PEZT; postsegregational 90.7 0.098 3.4E-06 56.5 2.6 24 1026-1049 31-54 (253)
271 3co5_A Putative two-component 90.6 0.12 4.3E-06 50.5 3.1 20 1029-1048 29-48 (143)
272 3uk6_A RUVB-like 2; hexameric 90.5 0.24 8.2E-06 56.0 5.8 24 1027-1050 70-93 (368)
273 3vfd_A Spastin; ATPase, microt 90.4 0.27 9.4E-06 56.5 6.2 21 1028-1048 149-169 (389)
274 1w5s_A Origin recognition comp 90.2 0.19 6.5E-06 57.6 4.7 89 1027-1117 50-149 (412)
275 2chg_A Replication factor C sm 90.1 0.39 1.3E-05 49.2 6.5 22 1029-1050 40-61 (226)
276 2vli_A Antibiotic resistance p 90.1 0.12 4.1E-06 52.2 2.5 22 1027-1048 5-26 (183)
277 1tev_A UMP-CMP kinase; ploop, 89.9 0.15 5.3E-06 51.7 3.2 22 1027-1048 3-24 (196)
278 2qby_B CDC6 homolog 3, cell di 89.9 0.33 1.1E-05 55.1 6.3 24 1027-1050 45-68 (384)
279 1np6_A Molybdopterin-guanine d 89.9 0.15 5.3E-06 52.1 3.1 29 1028-1058 7-35 (174)
280 4b4t_M 26S protease regulatory 89.8 0.31 1.1E-05 57.0 5.9 28 1027-1059 215-242 (434)
281 3iij_A Coilin-interacting nucl 89.7 0.16 5.5E-06 51.4 3.1 22 1027-1048 11-32 (180)
282 4b4t_J 26S protease regulatory 89.6 0.33 1.1E-05 56.2 5.9 28 1027-1059 182-209 (405)
283 4a1f_A DNAB helicase, replicat 89.5 0.49 1.7E-05 53.5 7.2 29 1025-1053 44-72 (338)
284 2q6t_A DNAB replication FORK h 89.5 0.38 1.3E-05 56.5 6.4 30 1025-1054 198-227 (444)
285 2qp9_X Vacuolar protein sortin 89.4 0.31 1.1E-05 55.4 5.5 22 1028-1049 85-106 (355)
286 3cmw_A Protein RECA, recombina 89.4 0.43 1.5E-05 64.3 7.6 92 1025-1119 730-823 (1706)
287 2c95_A Adenylate kinase 1; tra 89.3 0.2 6.9E-06 51.1 3.5 22 1027-1048 9-30 (196)
288 2j9r_A Thymidine kinase; TK1, 89.3 0.26 8.8E-06 52.1 4.3 81 1026-1115 27-110 (214)
289 1udx_A The GTP-binding protein 89.3 0.18 6.1E-06 58.8 3.4 24 1027-1050 157-180 (416)
290 2jaq_A Deoxyguanosine kinase; 89.3 0.18 6.2E-06 51.6 3.1 20 1029-1048 2-21 (205)
291 1uf9_A TT1252 protein; P-loop, 89.2 0.21 7.1E-06 51.3 3.5 23 1027-1049 8-30 (203)
292 1gtv_A TMK, thymidylate kinase 89.2 0.12 4E-06 53.7 1.6 21 1029-1049 2-22 (214)
293 1odf_A YGR205W, hypothetical 3 89.1 0.23 7.8E-06 55.1 4.0 26 1026-1051 30-55 (290)
294 2e5q_A PHD finger protein 19; 89.1 0.41 1.4E-05 39.6 4.3 43 106-149 10-52 (63)
295 2www_A Methylmalonic aciduria 89.0 0.2 6.8E-06 57.0 3.4 24 1027-1050 74-97 (349)
296 2p67_A LAO/AO transport system 88.9 0.21 7.2E-06 56.5 3.6 31 1026-1058 55-85 (341)
297 4b4t_L 26S protease subunit RP 88.8 0.47 1.6E-05 55.6 6.5 28 1027-1059 215-242 (437)
298 3e1s_A Exodeoxyribonuclease V, 88.8 0.11 3.8E-06 63.1 1.2 31 1027-1059 204-234 (574)
299 3bh0_A DNAB-like replicative h 88.8 0.35 1.2E-05 54.1 5.2 39 1025-1063 66-105 (315)
300 2plr_A DTMP kinase, probable t 88.7 0.22 7.4E-06 51.4 3.3 23 1027-1049 4-26 (213)
301 1nks_A Adenylate kinase; therm 88.6 0.22 7.5E-06 50.5 3.2 22 1028-1049 2-23 (194)
302 2v3c_C SRP54, signal recogniti 88.5 0.89 3E-05 53.2 8.6 87 1027-1119 99-193 (432)
303 2v54_A DTMP kinase, thymidylat 88.5 0.24 8.1E-06 50.9 3.4 22 1027-1048 4-25 (204)
304 2z0h_A DTMP kinase, thymidylat 88.5 0.22 7.5E-06 50.8 3.1 30 1029-1060 2-31 (197)
305 2wwf_A Thymidilate kinase, put 88.4 0.25 8.5E-06 51.1 3.5 23 1027-1049 10-32 (212)
306 3e2i_A Thymidine kinase; Zn-bi 88.3 0.36 1.2E-05 51.1 4.5 53 1026-1080 27-82 (219)
307 3ake_A Cytidylate kinase; CMP 88.3 0.23 7.8E-06 51.2 3.1 21 1029-1049 4-24 (208)
308 2zan_A Vacuolar protein sortin 88.1 0.28 9.5E-06 57.7 4.0 22 1028-1049 168-189 (444)
309 1qf9_A UMP/CMP kinase, protein 88.1 0.26 8.7E-06 50.0 3.3 22 1027-1048 6-27 (194)
310 1nn5_A Similar to deoxythymidy 88.1 0.26 9E-06 51.0 3.5 23 1027-1049 9-31 (215)
311 2e5p_A Protein PHF1, PHD finge 88.1 0.72 2.5E-05 38.8 5.2 43 106-149 12-54 (68)
312 3r20_A Cytidylate kinase; stru 88.0 0.24 8.1E-06 53.1 3.1 22 1027-1048 9-30 (233)
313 4b4t_K 26S protease regulatory 88.0 0.38 1.3E-05 56.1 5.0 28 1027-1059 206-233 (428)
314 3trf_A Shikimate kinase, SK; a 87.9 0.27 9.1E-06 49.8 3.2 22 1027-1048 5-26 (185)
315 1tue_A Replication protein E1; 87.8 0.24 8E-06 52.1 2.8 23 1027-1049 58-80 (212)
316 1j8m_F SRP54, signal recogniti 87.7 0.43 1.5E-05 53.0 5.1 31 1027-1059 98-128 (297)
317 1e6c_A Shikimate kinase; phosp 87.7 0.24 8.3E-06 49.4 2.8 21 1028-1048 3-23 (173)
318 1jr3_A DNA polymerase III subu 87.6 0.18 6.2E-06 57.0 2.0 23 1027-1049 38-60 (373)
319 2bwj_A Adenylate kinase 5; pho 87.4 0.3 1E-05 49.8 3.4 22 1027-1048 12-33 (199)
320 1ni3_A YCHF GTPase, YCHF GTP-b 87.4 0.34 1.2E-05 55.9 4.1 23 1027-1049 20-42 (392)
321 2wji_A Ferrous iron transport 87.3 0.27 9.3E-06 48.7 2.9 20 1029-1048 5-24 (165)
322 3a4m_A L-seryl-tRNA(SEC) kinas 87.3 0.29 1E-05 53.0 3.3 31 1027-1059 4-34 (260)
323 1sxj_C Activator 1 40 kDa subu 87.2 0.27 9.1E-06 55.3 3.1 22 1030-1051 49-70 (340)
324 4b4t_H 26S protease regulatory 87.1 0.6 2.1E-05 54.8 6.0 28 1027-1059 243-270 (467)
325 1qvr_A CLPB protein; coiled co 87.0 0.45 1.5E-05 60.7 5.3 78 1028-1117 192-274 (854)
326 1ukz_A Uridylate kinase; trans 87.0 0.33 1.1E-05 49.9 3.4 23 1026-1048 14-36 (203)
327 1zd8_A GTP:AMP phosphotransfer 87.0 0.32 1.1E-05 51.3 3.3 22 1027-1048 7-28 (227)
328 1ofh_A ATP-dependent HSL prote 86.9 0.23 7.9E-06 54.4 2.3 22 1029-1050 52-73 (310)
329 3zvl_A Bifunctional polynucleo 86.8 0.37 1.3E-05 56.1 4.0 34 1014-1048 246-279 (416)
330 3hu3_A Transitional endoplasmi 86.7 0.45 1.5E-05 56.6 4.7 21 1028-1048 239-259 (489)
331 2wjg_A FEOB, ferrous iron tran 86.7 0.31 1E-05 49.1 2.9 20 1029-1048 9-28 (188)
332 2iyv_A Shikimate kinase, SK; t 86.6 0.31 1.1E-05 49.3 2.8 22 1028-1049 3-24 (184)
333 4b4t_I 26S protease regulatory 86.5 0.6 2.1E-05 54.3 5.4 28 1027-1059 216-243 (437)
334 2pbr_A DTMP kinase, thymidylat 86.5 0.34 1.2E-05 49.1 3.1 21 1029-1049 2-22 (195)
335 3cmu_A Protein RECA, recombina 86.4 0.58 2E-05 64.0 6.1 91 1025-1118 1079-1171(2050)
336 3nbx_X ATPase RAVA; AAA+ ATPas 86.3 0.18 6.3E-06 60.1 1.1 21 1029-1049 43-63 (500)
337 1zak_A Adenylate kinase; ATP:A 86.3 0.37 1.3E-05 50.6 3.3 22 1027-1048 5-26 (222)
338 1iqp_A RFCS; clamp loader, ext 86.2 0.43 1.5E-05 52.6 4.0 22 1029-1050 48-69 (327)
339 1aky_A Adenylate kinase; ATP:A 86.2 0.38 1.3E-05 50.4 3.4 22 1027-1048 4-25 (220)
340 2cdn_A Adenylate kinase; phosp 86.0 0.4 1.4E-05 49.4 3.4 22 1027-1048 20-41 (201)
341 3cf2_A TER ATPase, transitiona 86.0 0.65 2.2E-05 58.4 5.8 22 1027-1048 238-259 (806)
342 2xb4_A Adenylate kinase; ATP-b 85.9 0.37 1.3E-05 50.9 3.1 20 1029-1048 2-21 (223)
343 3fb4_A Adenylate kinase; psych 85.8 0.37 1.3E-05 50.1 3.1 20 1029-1048 2-21 (216)
344 2pt5_A Shikimate kinase, SK; a 85.7 0.39 1.3E-05 47.7 3.0 20 1029-1048 2-21 (168)
345 1sxj_A Activator 1 95 kDa subu 85.7 0.34 1.2E-05 58.0 3.0 23 1027-1049 77-99 (516)
346 2c9o_A RUVB-like 1; hexameric 85.6 0.28 9.5E-06 57.8 2.2 23 1028-1050 64-86 (456)
347 1xjc_A MOBB protein homolog; s 85.6 0.42 1.4E-05 48.6 3.1 31 1028-1060 5-35 (169)
348 1ltq_A Polynucleotide kinase; 85.4 0.4 1.4E-05 52.7 3.2 22 1028-1049 3-24 (301)
349 3u61_B DNA polymerase accessor 85.3 0.28 9.6E-06 54.6 1.9 22 1027-1048 48-69 (324)
350 1um8_A ATP-dependent CLP prote 85.3 0.32 1.1E-05 55.6 2.4 21 1029-1049 74-94 (376)
351 2gj8_A MNME, tRNA modification 85.3 0.41 1.4E-05 47.9 3.0 21 1028-1048 5-25 (172)
352 2qen_A Walker-type ATPase; unk 85.2 0.52 1.8E-05 52.4 4.0 21 1028-1048 32-52 (350)
353 3ld9_A DTMP kinase, thymidylat 85.1 1.4 4.8E-05 46.7 7.1 24 1026-1049 20-43 (223)
354 3bgw_A DNAB-like replicative h 85.1 1.6 5.4E-05 51.3 8.2 50 1025-1074 195-245 (444)
355 2zej_A Dardarin, leucine-rich 85.0 0.37 1.3E-05 48.7 2.5 20 1030-1049 5-24 (184)
356 3dl0_A Adenylate kinase; phosp 85.0 0.43 1.5E-05 49.7 3.1 20 1029-1048 2-21 (216)
357 3cmu_A Protein RECA, recombina 84.8 0.82 2.8E-05 62.6 6.2 92 1025-1119 381-474 (2050)
358 1w4r_A Thymidine kinase; type 84.4 0.59 2E-05 48.6 3.6 59 1014-1078 11-71 (195)
359 1uj2_A Uridine-cytidine kinase 84.2 0.51 1.8E-05 50.7 3.3 23 1026-1048 21-43 (252)
360 2iut_A DNA translocase FTSK; n 84.1 1 3.5E-05 54.3 6.1 25 1029-1053 216-240 (574)
361 4ag6_A VIRB4 ATPase, type IV s 84.1 0.51 1.8E-05 54.2 3.5 25 1028-1052 36-60 (392)
362 2ffh_A Protein (FFH); SRP54, s 84.1 0.67 2.3E-05 54.1 4.4 30 1027-1058 98-127 (425)
363 3hws_A ATP-dependent CLP prote 84.1 0.24 8.3E-06 56.3 0.7 22 1029-1050 53-74 (363)
364 2chq_A Replication factor C sm 83.9 0.52 1.8E-05 51.8 3.3 22 1030-1051 41-62 (319)
365 1sky_E F1-ATPase, F1-ATP synth 83.7 1.1 3.7E-05 52.8 5.9 29 1027-1055 151-179 (473)
366 2wac_A CG7008-PA; unknown func 83.6 1 3.4E-05 47.3 5.2 43 105-149 53-96 (218)
367 1a7j_A Phosphoribulokinase; tr 83.4 0.39 1.3E-05 53.1 1.9 23 1027-1049 5-27 (290)
368 1ypw_A Transitional endoplasmi 83.4 0.24 8.1E-06 62.8 0.2 25 1027-1051 511-535 (806)
369 2f6r_A COA synthase, bifunctio 83.3 0.62 2.1E-05 51.2 3.5 23 1026-1048 74-96 (281)
370 3tlx_A Adenylate kinase 2; str 83.3 0.59 2E-05 50.0 3.3 22 1027-1048 29-50 (243)
371 4edh_A DTMP kinase, thymidylat 82.9 0.64 2.2E-05 49.0 3.3 32 1027-1060 6-37 (213)
372 2dhr_A FTSH; AAA+ protein, hex 82.8 0.53 1.8E-05 56.1 2.9 22 1029-1050 66-87 (499)
373 1zuh_A Shikimate kinase; alpha 82.8 0.64 2.2E-05 46.3 3.1 21 1028-1048 8-28 (168)
374 3be4_A Adenylate kinase; malar 82.7 0.65 2.2E-05 48.6 3.3 22 1027-1048 5-26 (217)
375 1e4v_A Adenylate kinase; trans 82.6 0.64 2.2E-05 48.4 3.2 21 1029-1049 2-22 (214)
376 2zts_A Putative uncharacterize 82.6 2.4 8.1E-05 44.6 7.7 39 1025-1063 28-68 (251)
377 1ega_A Protein (GTP-binding pr 82.5 0.59 2E-05 51.8 3.0 22 1027-1048 8-29 (301)
378 2grj_A Dephospho-COA kinase; T 82.2 0.67 2.3E-05 48.0 3.1 23 1027-1049 12-34 (192)
379 3ntk_A Maternal protein tudor; 81.8 1.3 4.5E-05 44.8 5.0 50 103-157 47-97 (169)
380 3lv8_A DTMP kinase, thymidylat 81.8 0.77 2.6E-05 49.2 3.5 30 1027-1058 27-56 (236)
381 2eko_A Histone acetyltransfera 81.2 1 3.6E-05 40.5 3.5 41 103-143 9-54 (87)
382 3v9p_A DTMP kinase, thymidylat 81.1 0.71 2.4E-05 49.2 2.8 23 1027-1049 25-47 (227)
383 3dlm_A Histone-lysine N-methyl 81.1 1.3 4.5E-05 46.1 4.6 49 102-150 67-119 (213)
384 4tmk_A Protein (thymidylate ki 81.0 0.87 3E-05 48.0 3.5 30 1027-1058 3-32 (213)
385 1wgs_A MYST histone acetyltran 81.0 1.4 4.7E-05 43.0 4.6 38 105-143 14-55 (133)
386 3umf_A Adenylate kinase; rossm 80.8 0.87 3E-05 48.2 3.4 23 1026-1048 28-50 (217)
387 3cmw_A Protein RECA, recombina 80.7 1.6 5.3E-05 59.1 6.5 102 1014-1118 1416-1521(1706)
388 2ocp_A DGK, deoxyguanosine kin 80.7 0.87 3E-05 48.4 3.4 22 1027-1048 2-23 (241)
389 2ga8_A Hypothetical 39.9 kDa p 80.6 0.8 2.8E-05 52.0 3.2 24 1028-1051 25-48 (359)
390 3exa_A TRNA delta(2)-isopenten 80.6 0.85 2.9E-05 51.0 3.3 34 1027-1065 3-37 (322)
391 3foz_A TRNA delta(2)-isopenten 80.4 0.93 3.2E-05 50.6 3.5 23 1027-1049 10-32 (316)
392 3crm_A TRNA delta(2)-isopenten 80.2 0.84 2.9E-05 51.2 3.2 32 1028-1064 6-38 (323)
393 3d3q_A TRNA delta(2)-isopenten 80.2 0.82 2.8E-05 51.7 3.1 33 1028-1065 8-41 (340)
394 2ro0_A Histone acetyltransfera 80.1 4.6 0.00016 36.7 7.4 37 105-143 25-63 (92)
395 3vkw_A Replicase large subunit 79.2 0.83 2.8E-05 53.4 2.8 23 1026-1048 160-182 (446)
396 2h92_A Cytidylate kinase; ross 79.2 0.93 3.2E-05 47.1 3.0 21 1028-1048 4-24 (219)
397 1a5t_A Delta prime, HOLB; zinc 79.1 1.6 5.3E-05 49.1 5.0 24 1027-1050 24-47 (334)
398 1ak2_A Adenylate kinase isoenz 79.0 1.1 3.6E-05 47.5 3.4 23 1027-1049 16-38 (233)
399 3ice_A Transcription terminati 79.0 1.3 4.6E-05 50.8 4.3 40 1018-1058 166-205 (422)
400 3lxx_A GTPase IMAP family memb 78.7 0.94 3.2E-05 47.9 2.9 21 1028-1048 30-50 (239)
401 2r8r_A Sensor protein; KDPD, P 78.6 0.86 2.9E-05 48.5 2.5 30 1029-1060 8-37 (228)
402 2qmh_A HPR kinase/phosphorylas 78.6 1.1 3.8E-05 46.8 3.2 22 1027-1048 34-55 (205)
403 1r6b_X CLPA protein; AAA+, N-t 78.6 2.1 7E-05 53.7 6.4 25 1027-1051 207-231 (758)
404 2qtf_A Protein HFLX, GTP-bindi 78.4 1 3.4E-05 51.5 3.1 22 1028-1049 180-201 (364)
405 1q57_A DNA primase/helicase; d 78.4 1.7 5.7E-05 51.8 5.2 29 1025-1053 240-268 (503)
406 4b9w_A TDRD1, tudor domain-con 78.1 2 6.8E-05 44.7 5.1 50 105-157 67-117 (201)
407 3pih_A Uvrabc system protein A 77.9 1.2 4.1E-05 56.8 3.9 39 993-1044 3-41 (916)
408 2ged_A SR-beta, signal recogni 77.7 1.1 3.7E-05 45.2 2.9 22 1028-1049 49-70 (193)
409 1w36_D RECD, exodeoxyribonucle 77.3 1.4 4.7E-05 53.9 4.1 24 1027-1050 164-187 (608)
410 4b9x_A TDRD1, tudor domain-con 77.2 2.3 7.8E-05 45.1 5.3 44 106-150 68-112 (226)
411 2vf7_A UVRA2, excinuclease ABC 77.1 1.1 3.8E-05 56.6 3.2 42 992-1046 14-55 (842)
412 1zcb_A G alpha I/13; GTP-bindi 77.1 1.2 4.1E-05 50.9 3.2 22 1029-1050 35-56 (362)
413 2rnz_A Histone acetyltransfera 77.0 3.4 0.00012 37.7 5.5 38 105-144 27-66 (94)
414 1fzq_A ADP-ribosylation factor 76.8 1.1 3.6E-05 45.2 2.4 21 1028-1048 17-37 (181)
415 3tmk_A Thymidylate kinase; pho 76.7 1.4 4.8E-05 46.5 3.5 23 1027-1049 5-27 (216)
416 1moz_A ARL1, ADP-ribosylation 76.5 1.1 3.7E-05 44.7 2.4 21 1028-1048 19-39 (183)
417 2ygr_A Uvrabc system protein A 76.5 1.3 4.4E-05 56.7 3.6 42 992-1046 24-65 (993)
418 2dyk_A GTP-binding protein; GT 76.4 1.3 4.4E-05 42.9 2.9 20 1029-1048 3-22 (161)
419 1g5t_A COB(I)alamin adenosyltr 76.4 3 0.0001 43.3 5.7 29 1029-1059 30-58 (196)
420 2xtz_A Guanine nucleotide-bind 76.2 1.3 4.4E-05 50.4 3.2 21 1030-1050 12-32 (354)
421 3p32_A Probable GTPase RV1496/ 76.2 3 0.0001 47.2 6.3 31 1027-1059 79-109 (355)
422 3pxg_A Negative regulator of g 76.0 2.5 8.5E-05 49.9 5.7 23 1029-1051 203-225 (468)
423 2lcc_A AT-rich interactive dom 75.9 1.9 6.4E-05 37.8 3.4 39 105-143 7-49 (76)
424 2ce2_X GTPase HRAS; signaling 75.5 1.4 4.9E-05 42.4 3.0 19 1030-1048 6-24 (166)
425 3k53_A Ferrous iron transport 75.5 1.3 4.5E-05 47.9 3.0 20 1029-1048 5-24 (271)
426 1m2o_B GTP-binding protein SAR 75.1 1.5 5E-05 44.6 3.0 20 1029-1048 25-44 (190)
427 1z2a_A RAS-related protein RAB 75.1 1.5 5E-05 42.8 2.9 20 1029-1048 7-26 (168)
428 1mky_A Probable GTP-binding pr 75.0 1.3 4.4E-05 51.8 2.9 21 1028-1048 181-201 (439)
429 2a5y_B CED-4; apoptosis; HET: 74.9 1 3.5E-05 54.3 2.0 89 1026-1116 151-253 (549)
430 1f6b_A SAR1; gtpases, N-termin 74.8 1.2 4.3E-05 45.4 2.4 20 1029-1048 27-46 (198)
431 3sr0_A Adenylate kinase; phosp 74.8 1.5 5.2E-05 45.8 3.1 20 1029-1048 2-21 (206)
432 2r6f_A Excinuclease ABC subuni 74.8 1.4 4.8E-05 56.1 3.3 42 992-1046 22-63 (972)
433 1p5z_B DCK, deoxycytidine kina 74.8 1.1 3.7E-05 48.4 2.0 23 1026-1048 23-45 (263)
434 1c9k_A COBU, adenosylcobinamid 74.3 1.5 5.3E-05 44.9 2.9 36 1090-1125 111-146 (180)
435 1r6b_X CLPA protein; AAA+, N-t 74.3 2.2 7.6E-05 53.3 4.9 23 1029-1051 490-512 (758)
436 2r2a_A Uncharacterized protein 74.1 1.8 6.2E-05 45.0 3.4 20 1028-1047 6-25 (199)
437 1svi_A GTP-binding protein YSX 73.8 1.7 5.6E-05 43.8 3.0 21 1028-1048 24-44 (195)
438 4hlc_A DTMP kinase, thymidylat 73.8 1.7 5.9E-05 45.3 3.2 22 1028-1049 3-24 (205)
439 1ky3_A GTP-binding protein YPT 73.7 1.6 5.5E-05 43.0 2.9 20 1029-1048 10-29 (182)
440 3h8z_A FragIle X mental retard 73.6 3.4 0.00012 39.9 4.9 37 105-143 62-102 (128)
441 1qvr_A CLPB protein; coiled co 73.6 2.1 7.3E-05 54.4 4.6 23 1029-1051 590-612 (854)
442 1ek0_A Protein (GTP-binding pr 73.5 1.7 5.7E-05 42.3 2.9 19 1030-1048 6-24 (170)
443 2erx_A GTP-binding protein DI- 73.5 1.7 5.7E-05 42.4 2.9 19 1030-1048 6-24 (172)
444 1z0j_A RAB-22, RAS-related pro 73.5 1.7 5.7E-05 42.4 2.9 19 1030-1048 9-27 (170)
445 2r62_A Cell division protease 73.4 0.86 3E-05 49.0 0.8 21 1029-1049 46-66 (268)
446 1u8z_A RAS-related protein RAL 73.4 1.7 5.8E-05 42.1 2.9 20 1029-1048 6-25 (168)
447 2qag_A Septin-2, protein NEDD5 73.3 1.2 4.1E-05 50.7 2.0 19 1030-1048 40-58 (361)
448 1g16_A RAS-related protein SEC 73.3 1.8 6E-05 42.2 3.0 19 1030-1048 6-24 (170)
449 2cxx_A Probable GTP-binding pr 73.3 1.7 6E-05 43.3 3.0 19 1030-1048 4-22 (190)
450 1z08_A RAS-related protein RAB 73.3 1.7 5.8E-05 42.4 2.9 20 1029-1048 8-27 (170)
451 3a8t_A Adenylate isopentenyltr 73.2 1.8 6.2E-05 48.8 3.3 34 1027-1065 40-74 (339)
452 1kao_A RAP2A; GTP-binding prot 73.0 1.8 6E-05 42.0 2.9 19 1030-1048 6-24 (167)
453 2lkc_A Translation initiation 72.7 2.1 7.3E-05 42.1 3.4 22 1027-1048 8-29 (178)
454 1wms_A RAB-9, RAB9, RAS-relate 72.7 1.8 6.1E-05 42.7 2.9 20 1029-1048 9-28 (177)
455 3pqc_A Probable GTP-binding pr 72.6 1.9 6.3E-05 43.2 3.0 20 1029-1048 25-44 (195)
456 2e87_A Hypothetical protein PH 72.4 1.7 5.7E-05 49.3 2.9 21 1028-1048 168-188 (357)
457 2nzj_A GTP-binding protein REM 72.0 1.9 6.5E-05 42.3 2.9 20 1029-1048 6-25 (175)
458 1upt_A ARL1, ADP-ribosylation 71.9 1.9 6.5E-05 42.1 2.9 20 1029-1048 9-28 (171)
459 2hqx_A P100 CO-activator tudor 71.9 3.2 0.00011 44.4 4.9 44 104-149 66-110 (246)
460 3q85_A GTP-binding protein REM 71.8 1.9 6.6E-05 42.0 2.9 19 1030-1048 5-23 (169)
461 1c1y_A RAS-related protein RAP 71.3 2 6.9E-05 41.7 2.9 19 1030-1048 6-24 (167)
462 2wsm_A Hydrogenase expression/ 71.3 2.3 7.7E-05 44.0 3.4 24 1027-1050 30-53 (221)
463 2y8e_A RAB-protein 6, GH09086P 71.1 2.1 7.2E-05 42.1 3.0 19 1030-1048 17-35 (179)
464 1nrj_B SR-beta, signal recogni 71.0 2 6.8E-05 44.3 2.9 21 1028-1048 13-33 (218)
465 2a9k_A RAS-related protein RAL 70.9 2.1 7E-05 42.5 2.9 20 1029-1048 20-39 (187)
466 3eph_A TRNA isopentenyltransfe 70.9 2.1 7.3E-05 49.4 3.3 33 1028-1064 3-35 (409)
467 4fid_A G protein alpha subunit 70.9 2.2 7.4E-05 48.3 3.3 21 1030-1050 8-28 (340)
468 3q72_A GTP-binding protein RAD 70.9 2.1 7E-05 41.7 2.8 19 1030-1048 5-23 (166)
469 2fn4_A P23, RAS-related protei 70.8 2.2 7.4E-05 42.1 3.0 21 1029-1049 11-31 (181)
470 3pxi_A Negative regulator of g 70.7 2.2 7.7E-05 53.4 3.8 67 1030-1117 524-590 (758)
471 1z0f_A RAB14, member RAS oncog 70.7 2.1 7.2E-05 42.1 2.9 20 1029-1048 17-36 (179)
472 2bme_A RAB4A, RAS-related prot 70.5 2.2 7.5E-05 42.5 3.0 20 1029-1048 12-31 (186)
473 3ihw_A Centg3; RAS, centaurin, 70.3 2.1 7.3E-05 43.1 2.9 20 1029-1048 22-41 (184)
474 3tw8_B RAS-related protein RAB 70.2 2.1 7.1E-05 42.2 2.7 20 1029-1048 11-30 (181)
475 4dsu_A GTPase KRAS, isoform 2B 69.9 2.2 7.6E-05 42.4 2.9 19 1030-1048 7-25 (189)
476 1m7b_A RND3/RHOE small GTP-bin 69.9 2.3 7.8E-05 42.6 3.0 20 1029-1048 9-28 (184)
477 3bc1_A RAS-related protein RAB 69.9 2.2 7.6E-05 42.5 2.9 20 1029-1048 13-32 (195)
478 1r2q_A RAS-related protein RAB 69.8 2.3 7.8E-05 41.3 2.9 20 1029-1048 8-27 (170)
479 3tqf_A HPR(Ser) kinase; transf 69.6 2.8 9.4E-05 42.8 3.4 21 1027-1047 16-36 (181)
480 3con_A GTPase NRAS; structural 69.6 2.3 7.8E-05 42.6 2.9 20 1029-1048 23-42 (190)
481 2f5k_A MORF-related gene 15 is 69.5 4.5 0.00015 37.5 4.5 37 105-143 24-62 (102)
482 2xxa_A Signal recognition part 69.4 6.1 0.00021 46.1 6.8 33 1026-1060 99-132 (433)
483 2oil_A CATX-8, RAS-related pro 69.1 2.3 7.9E-05 42.8 2.8 20 1029-1048 27-46 (193)
484 2efe_B Small GTP-binding prote 68.7 2.4 8.4E-05 41.8 2.9 20 1029-1048 14-33 (181)
485 2hxs_A RAB-26, RAS-related pro 68.5 2.5 8.5E-05 41.6 2.9 21 1029-1049 8-28 (178)
486 1r8s_A ADP-ribosylation factor 68.5 2.5 8.7E-05 40.9 2.9 20 1030-1049 3-22 (164)
487 2bud_A Males-absent on the fir 68.4 7.1 0.00024 35.3 5.4 38 107-145 18-60 (92)
488 2hf9_A Probable hydrogenase ni 68.2 2.9 9.9E-05 43.3 3.4 24 1027-1050 38-61 (226)
489 3kkq_A RAS-related protein M-R 68.1 2.6 8.7E-05 41.9 2.9 20 1029-1048 20-39 (183)
490 1vg8_A RAS-related protein RAB 67.9 2.6 8.7E-05 42.8 2.9 20 1029-1048 10-29 (207)
491 3clv_A RAB5 protein, putative; 67.9 2.6 8.8E-05 42.2 2.9 20 1029-1048 9-28 (208)
492 3tkl_A RAS-related protein RAB 67.5 2.7 9.1E-05 42.2 2.9 20 1029-1048 18-37 (196)
493 2bov_A RAla, RAS-related prote 67.4 2.7 9.1E-05 42.6 2.9 20 1029-1048 16-35 (206)
494 3t5g_A GTP-binding protein RHE 67.4 2.8 9.5E-05 41.5 3.0 20 1029-1048 8-27 (181)
495 2fg5_A RAB-22B, RAS-related pr 67.4 2.8 9.4E-05 42.3 3.0 20 1029-1048 25-44 (192)
496 1cip_A Protein (guanine nucleo 67.3 2.8 9.4E-05 47.7 3.2 21 1030-1050 35-55 (353)
497 3t34_A Dynamin-related protein 67.2 2.7 9.2E-05 47.6 3.1 20 1029-1048 36-55 (360)
498 1mh1_A RAC1; GTP-binding, GTPa 67.2 2.8 9.4E-05 41.6 2.9 19 1030-1048 8-26 (186)
499 3hjn_A DTMP kinase, thymidylat 67.1 2.9 9.9E-05 43.2 3.1 30 1029-1060 2-31 (197)
500 2ohf_A Protein OLA1, GTP-bindi 67.0 2.5 8.7E-05 48.7 2.9 22 1028-1049 23-44 (396)
No 1
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=3.1e-147 Score=1412.14 Aligned_cols=829 Identities=40% Similarity=0.677 Sum_probs=675.6
Q ss_pred ccccccccccccccccccCC-CCcccCCCCCCCCCCCCCCCCCCchhhcCCCHHHHHHHHHHHhCCCeEEEEeeCceEEE
Q 001187 278 GDVSERFSAREADKFHFLGP-DRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYEL 356 (1129)
Q Consensus 278 ~~~~~~~~~~~~~~~~~l~~-~~rD~~~r~p~~p~ydp~Tl~ip~~~~~~~TP~~~Qyw~iK~~~~D~vlffkvGkFYEl 356 (1129)
|+..+++..|.|++|+||++ +|||++||||+||+|||||||||+++|+++||||||||+||++|||+||||||||||||
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~rD~~~r~~~~p~ydp~tl~ip~~~~~~~TPmm~Qy~~iK~~~~d~llffr~GdFYEl 97 (1022)
T 2o8b_B 18 GDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYEL 97 (1022)
T ss_dssp ------CCSCGGGGCGGGSTTTCCCTTCCCTTSTTCCTTCCCCCHHHHTTSCHHHHHHHHHHHHCTTSEEEEEETTEEEE
T ss_pred CCccccccccccccchhcCccccccccCCCCCCCCCCCCcccCCchhhccCCHHHHHHHHHHHhCCCEEEEEECCCEEEE
Confidence 45677888999999999987 79999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHHHHhhhcceeeecCCCCcCCcCcccHhHHHHHHHHcCCeEEEEecCCChhHHHHHhhhcC---CCCceeeeeEEE
Q 001187 357 FEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG---SKDKVVKREICA 433 (1129)
Q Consensus 357 y~~DA~i~a~~L~L~~t~g~~p~~GfPe~sl~~y~~kLV~~GyKVavvEQ~Et~~~~~~r~k~~~---~~~kvv~Rev~~ 433 (1129)
|++||+++|++|+|++|+|++||||||+|+++.|+++||++|||||||||+|+|++++.|.+.++ +++++|+||||+
T Consensus 98 f~~DA~~~a~~L~i~lt~~~~pmaGvP~ha~~~yl~~Lv~~GykVai~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~r 177 (1022)
T 2o8b_B 98 YHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 177 (1022)
T ss_dssp EHHHHHHHHHHHCCCCCSSSSCEEEEEGGGHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEE
T ss_pred ehhhHHHHHHhcCeEEecCCCCCCCCchhHHHHHHHHHHHCCCeEEEEeCCCCchhhhhhhhhcccccccCCceeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999998888877543 456899999999
Q ss_pred EeeCcceeeccc---cCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEEEccCCeEEEEEecCcchhHHHHHHHHccCcc
Q 001187 434 VVTKGTLTEGEL---LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPV 510 (1129)
Q Consensus 434 V~TpGTl~d~~~---l~~~~~~~yllaI~e~~~~~~~~~~~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~ 510 (1129)
||||||++++.+ +. ...++||+||++..... ......|||||+|++||+|++++|.|+..+++|.+.|.+++|+
T Consensus 178 vvTpGT~~d~~~~~~l~-~~~~n~l~ai~~~~~~~--~~~~~~~Gla~~D~sTGe~~~~e~~d~~~~~~L~~~L~~~~P~ 254 (1022)
T 2o8b_B 178 IITKGTQTYSVLEGDPS-ENYSKYLLSLKEKEEDS--SGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPV 254 (1022)
T ss_dssp EECTTSCCCCTTSCCCS-CSSCCEEEEEEEEECSC--C-CCEEEEEEEECTTTCCEEEEEEEECSSCHHHHHHHHHSCEE
T ss_pred EECCCeeeccccccccc-CCCCcEEEEEEEccccc--cCCCcEEEEEEEECCCCEEEEEEecCchHHHHHHHHHHhcCCc
Confidence 999999999874 33 34789999999742110 1123579999999999999999999998899999999999999
Q ss_pred EEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhHHHHHH--HHHhhcccccccccccccccccccCCCCcccc
Q 001187 511 EIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIK--NIYNRITAESLNKADSNVANSQAEGDGLTCLP 588 (1129)
Q Consensus 511 EIl~~~~~ls~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~--~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~p 588 (1129)
|||++.+..+..+.+++.......+...+.+..+||+...+...+. .+|..... .....+||
T Consensus 255 Eil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~~~~----------------~~~~~~~~ 318 (1022)
T 2o8b_B 255 QVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLS----------------DGIGVMLP 318 (1022)
T ss_dssp EEEEETTTCCHHHHHHHTTTTTTSEEEEECBTTTBCCHHHHHHHHHHTTTTSSSSC----------------CCC-CCCC
T ss_pred EEEecCCccchHHHHHHHhhhhhhhhhhcccchhhcchhhHHhhhhhhhhcccccc----------------cccchhhH
Confidence 9999988777776666543322222222335668998776665443 34432110 00123566
Q ss_pred hhhhhhhcc----C----CChhHHHHHHHHHHHHHHHhccchhhhcccceeecCCCCC----------ccCCCCCeeecC
Q 001187 589 GILSELIST----G----DSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGF----------GDMAKKPYMVLD 650 (1129)
Q Consensus 589 ~~l~~~~~~----~----~~~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~~----------~~~~~~~~M~LD 650 (1129)
..+..+... + .+..++++|+|+||+||+.++++..++..++|..+..... ......+||+||
T Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~a~~A~gall~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~LD 398 (1022)
T 2o8b_B 319 QVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLD 398 (1022)
T ss_dssp HHHHHTEECCSTTCSEECGGGHHHHHHHHHHHHHHHHHTCHHHHHTTCCEEECCCGGGGTCC---------CCCCBCBCC
T ss_pred HHHHHhhcchhhcccccccccHHHHHHHHHHHHHHHHhCcchhhhccccccccccccccccccccccccccCCCCeEEeC
Confidence 665543311 1 1246789999999999999988766665566654422110 012456799999
Q ss_pred HHHHHhccCcccccCCCCcccHHHHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHcCCchhHHHHHHhcCCC
Q 001187 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRL 730 (1129)
Q Consensus 651 ~~Tl~~LEI~~~~~~g~~~gSL~~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~~~~lr~~L~~l 730 (1129)
++|++||||++|.++|+.+||||++||+|+|+||+||||+||++||+|++.|++|||+|++|+. +..++..++..|+++
T Consensus 399 ~~T~~nLEl~~~~~~g~~~gSLl~~Ld~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~-~~~~~~~l~~~L~~i 477 (1022)
T 2o8b_B 399 AVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMV-VPDKISEVVELLKKL 477 (1022)
T ss_dssp HHHHHHTTCSSCCSSSSCCCSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCccCCCCCCCCcHHHHhCcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHHHHHh-ChHHHHHHHHHHhcC
Confidence 9999999999998888889999999999999999999999999999999999999999999996 567788999999999
Q ss_pred CCHHHHHHHHhccccc---cCCCCccchhhHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcC--
Q 001187 731 PDMERLLARLFASSEA---NGRNSNKVVLYEDA--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTP-- 803 (1129)
Q Consensus 731 pDleRll~ri~~~~~~---~~~~~~~~~~~~~~--~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~-- 803 (1129)
|||||+++||+..+.. ..+...++++|++. ..+++.+|+..+.++..+..+...+........+.+|..+...
T Consensus 478 ~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~~~~s~lL~~~~~~~~ 557 (1022)
T 2o8b_B 478 PDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQT 557 (1022)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTSBTT
T ss_pred ccHHHHHHHHHhcCCcccccccchhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHhhc
Confidence 9999999999762111 01122345555542 5678888888877666555544444333334556677776532
Q ss_pred ---CCCchhHHHHHHHHHhhhchhhhcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEeCCc
Q 001187 804 ---GKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKD 880 (1129)
Q Consensus 804 ---~~~~~~l~~~l~~i~~~~d~~~~~~~g~ii~~~g~d~~lD~~~~~l~~l~~~L~~~l~~~~~~l~~~~i~~~~~~~~ 880 (1129)
...++++.+++..|..+||...+.+.|.+++++|++++||++++.+++++++|.++++++++.++..+++|++++++
T Consensus 558 ~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 637 (1022)
T 2o8b_B 558 KNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRN 637 (1022)
T ss_dssp TSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSGGGSSCSCCEEECCGGG
T ss_pred cccccchHHHHHHHHHHHHHhCchhhhcCCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence 14678888999999999998766678888889999999999999999999999999988888899888999999889
Q ss_pred eEEEEccccccCC-CCCcEEEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001187 881 LYLLEVPESLRGS-VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959 (1129)
Q Consensus 881 ~y~iev~~~~~~~-vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la 959 (1129)
+|+|+|+...... +|++|++.+++++..||+||+++++..++..+++++...+.+++.++++.+.++...|..+++++|
T Consensus 638 ~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la 717 (1022)
T 2o8b_B 638 RYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIA 717 (1022)
T ss_dssp CCEEEECTTTTSSCCCC-CEEEEETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred eEEEEEehhhhcccCCCceEEeeeccCccEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988777 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccceeecCCCCCCCCcEEEeccCCCccccccCCCCcccccccccCCCC------CCceEEEE
Q 001187 960 ELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHG------NASFILLT 1033 (1129)
Q Consensus 960 ~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~------~~~~~iit 1033 (1129)
+||||+|||.+|.....+||||+|.+. .++.+.|.|++||||+++.. ...+.|||||++|+... .+++++||
T Consensus 718 ~lD~l~s~A~~a~~~~~~~~~P~~~~~-~~~~~~l~i~~~rHP~l~~~-~~~~~~v~ndi~l~~~~~~~~~~~g~i~~It 795 (1022)
T 2o8b_B 718 VLDVLLCLANYSRGGDGPMCRPVILLP-EDTPPFLELKGSRHPCITKT-FFGDDFIPNDILIGCEEEEQENGKAYCVLVT 795 (1022)
T ss_dssp HHHHHHHHHHHTTCSSSCEECCEECCT-TTSCCCEEEEEECCCC-------CCCCCCEEEEESCCCSCC---CCCEEEEE
T ss_pred HHHHHHhHHHHHhhccCCccCCccccC-CCCCceEEEEeccccEEEEE-ecCCceEeeeeeeccccccccCCCCcEEEEE
Confidence 999999999999743558999999842 11345799999999999752 22347999999998632 16899999
Q ss_pred ecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEe
Q 001187 1034 GPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLD 1113 (1129)
Q Consensus 1034 GpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllD 1113 (1129)
||||||||||||++|++++|||+||||||+.+.++++|+||+|+|+.|++..|.|||++||.+++.|+..+++++|||||
T Consensus 796 GpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 796 GPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVD 875 (1022)
T ss_dssp CCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHhhh
Q 001187 1114 ELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1114 ElGRGTst~DG~AIA 1128 (1129)
|+|+||++.||.+||
T Consensus 876 Ep~~Gtd~~dg~~~~ 890 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIA 890 (1022)
T ss_dssp CTTTTSCHHHHHHHH
T ss_pred CCCCCCChHHHHHHH
Confidence 999999999998865
No 2
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=1.2e-125 Score=1194.63 Aligned_cols=739 Identities=29% Similarity=0.456 Sum_probs=578.2
Q ss_pred cCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEehhhHHHHhhhcceeeecC-CCCcCCcCcccHhHHHHHHHHcCCeEEE
Q 001187 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-EQPHCGFPERNFSMNVEKLARKGYRVLV 403 (1129)
Q Consensus 325 ~~~TP~~~Qyw~iK~~~~D~vlffkvGkFYEly~~DA~i~a~~L~L~~t~g-~~p~~GfPe~sl~~y~~kLV~~GyKVav 403 (1129)
.++||||||||+||++|||+|||||||||||||++||+++|++|||+++.+ ++||||||+|+++.|+++||++||||||
T Consensus 11 ~~~TPmm~Qy~~iK~~~~D~lLffr~GdFYElF~eDA~~as~~L~i~lt~~~~~pmaGvP~ha~~~yl~rLv~~G~kVai 90 (918)
T 3thx_B 11 SIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAKGYKVGV 90 (918)
T ss_dssp TTSCHHHHHHHHHHTTTTTSEEEEECSSEEEEEHHHHHHHHHHHTCCCEEETTEEEEEEEGGGHHHHHHHHHHHTCCEEE
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEEcCCEeeeeHhhHHHHHHHhCceeecCCCeeEEeccHhHHHHHHHHHHHcCCcEEE
Confidence 479999999999999999999999999999999999999999999998765 6899999999999999999999999999
Q ss_pred EecCCChhHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccc---------------cCCCCCCcEEEEEEecCCCCCC-
Q 001187 404 VEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL---------------LSANPDASYLMALTESNQSPAS- 467 (1129)
Q Consensus 404 vEQ~Et~~~~~~r~k~~~~~~kvv~Rev~~V~TpGTl~d~~~---------------l~~~~~~~yllaI~e~~~~~~~- 467 (1129)
|||+|+|++++. +++|+++|+||||+||||||++++++ +. +..+|||+||++...+...
T Consensus 91 ~eQ~E~p~~k~~----~~~k~~~v~R~v~rvvTpGT~~d~~~~~~~~~~~~~~~~~~l~-~~~~nyL~ai~~~~~~~~~~ 165 (918)
T 3thx_B 91 VKQTETAALKAI----GDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMT-DTSTSYLLCISENKENVRDK 165 (918)
T ss_dssp EEECSCHHHHTT----STTCSSCCCEEEEEEECTTCCCSTTTCCEEEC--CEEECCCSC-TTSCCCEEEEEEEC------
T ss_pred EeccCChhhhhc----ccccCCceeeeEEEEECCCcccccccccccccccccccccccC-CCCCcEEEEEEecccccccc
Confidence 999999986421 12455799999999999999999876 43 3468999999975422100
Q ss_pred CCCCcEEEEEEEEccCCeEEEEEecCcchhHHHHHHHHccCccEEEecCCCCChHHHHHHHhhc----CC-CccccccCC
Q 001187 468 QSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHT----RN-PLVNDLVPL 542 (1129)
Q Consensus 468 ~~~~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIl~~~~~ls~~t~~~l~~~~----~~-~~~~~~~~~ 542 (1129)
..+...||+||+|++||+|.+++|.|+..+++|.+.|.+++|+|||+|.+ ++..+.+++.... .. .......+
T Consensus 166 ~~~~~~~Gla~~D~sTGef~~~~f~d~~~~~~L~~~L~~~~P~Eil~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 243 (918)
T 3thx_B 166 KKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSA-LSEQTEALIHRATSVSVQDDRIRVERMD- 243 (918)
T ss_dssp ---CEEEEEEEEETTTTEEEEEEEEECTTCHHHHHHHHHHCCSEEEEESS-CCHHHHHHHHHHHHSSCSSSCCEEEEEC-
T ss_pred cccCceEEEEEEEccCCeEEEEEecCchhHHHHHHHHHhcCCeEEEecCC-cchHHHHHHHhhhcccccccceeEEecc-
Confidence 11234799999999999999999999988999999999999999999985 4555544433211 11 11111222
Q ss_pred ccccChhhHHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccch
Q 001187 543 SEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDE 622 (1129)
Q Consensus 543 ~~f~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~al~Algall~YL~~~~l~~ 622 (1129)
..+|+...+.+.+..+|..... ..++... +..+.. ....+++|+|++|+||+.++++.
T Consensus 244 ~~~f~~~~a~~~l~~~f~~~~l---------------~~~g~~~----~~~~~~---~~~~~~~A~gall~Yl~~~~~~~ 301 (918)
T 3thx_B 244 NIYFEYSHAFQAVTEFYAKDTV---------------DIKGSQI----ISGIVN---LEKPVICSLAAIIKYLKEFNLEK 301 (918)
T ss_dssp GGGTSHHHHHHHHHHHCC---------------------------------CCC---CCHHHHHHHHHHHHHHHHTTCGG
T ss_pred ccccChhHHHHHHHHHhCcccc---------------ccccchh----hhhhhc---ccHHHHHHHHHHHHHHHHhcccc
Confidence 3566777777777777753211 0111111 111111 23578999999999999988775
Q ss_pred hhhcccceeecCCCCCccCCCCCeeecCHHHHHhccCcccccCCCCcccHHHHHhhhcChHHHHHHHHhhhCCCCCHHHH
Q 001187 623 TLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLI 702 (1129)
Q Consensus 623 ~ll~~~~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~c~T~~GkRlLr~wl~~PL~d~~~I 702 (1129)
.+....+|..|. ...+||.||++|++||||++|.++|+.+||||++||+|+||||+||||+||++||+|++.|
T Consensus 302 ~l~~~~~~~~~~-------~~~~~m~LD~~T~rnLEL~~~~~~~~~~gSLl~~Ld~t~T~mG~RlLr~Wl~~PL~d~~~I 374 (918)
T 3thx_B 302 MLSKPENFKQLS-------SKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREI 374 (918)
T ss_dssp GGSCGGGEEESC-------CTTTBCEECHHHHHHTTSSSCTTTCSSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHH
T ss_pred cccccccceeec-------CCCCEEEECHHHHHhcCCcccCCCCCCCCcHHHHHhhCCChHHHHHHHHHHhCcCCCHHHH
Confidence 555555565441 2456999999999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCchhHHHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhH-HHHHH
Q 001187 703 RERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCE-LMDQA 781 (1129)
Q Consensus 703 ~~RldaVe~L~~~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~-~~~~~ 781 (1129)
++|||+|++|...+...+..++..|+++|||||+++|++.+.. + .+++..+...|..+. .+...
T Consensus 375 ~~R~daVe~l~~~~~~~~~~l~~~L~~i~DleRll~ri~~~~~-~--------------~~dl~~l~~~l~~l~~~l~~~ 439 (918)
T 3thx_B 375 NARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKC-S--------------TQEFFLIVKTLYHLKSEFQAI 439 (918)
T ss_dssp HHHHHHHHHHHSCCCTHHHHHHHTTTTCCCHHHHHHHHHTTCC-C--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHccCccHHHHHHHhccCcC-C--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999754556788899999999999999999975421 1 223334444443322 11111
Q ss_pred HHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhhchhhh--cCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHH
Q 001187 782 CSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKH 859 (1129)
Q Consensus 782 ~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~~d~~~~--~~~g~ii~~~g~d~~lD~~~~~l~~l~~~L~~~ 859 (1129)
+..+.....+.+|..++. .++.+...+..+.+.++.... ...+.++......++++..++.+++++.++.++
T Consensus 440 ---l~~~~~~~~~~lL~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 513 (918)
T 3thx_B 440 ---IPAVNSHIQSDLLRTVIL---EIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMH 513 (918)
T ss_dssp ---HHHHHHTCCCHHHHHHHT---HHHHHTGGGHHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHhhhhccCHHHHHHHH---hhhhhHHHHHHHHHHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 111112234455555432 123332234445555543211 112223211123477888889999999999999
Q ss_pred HHHHHHHhCCCCceEEEeCCceEEEEccccccCCCCCcEEEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001187 860 LKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939 (1129)
Q Consensus 860 l~~~~~~l~~~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~ 939 (1129)
++++++.++..++.|+++.+.+|+|+|+....+++|++|+.++++++..||+||+++++++++.++++++...++.++.+
T Consensus 514 l~~~~~~i~~~~~~~~~~~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~~~~~~ 593 (918)
T 3thx_B 514 LQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLD 593 (918)
T ss_dssp HHHHHHHHTCTTCCCEEETTEEEEEEEETTSGGGSCSSCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccceeEeecCCEEEEEEcHHHHhhCCCeEEEEEecCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888899999998999999999988899999999999999999999999999999999999988888899999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCCCCCCCcEEEeccCCCccccccCCCCccccccc
Q 001187 940 LIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDI 1019 (1129)
Q Consensus 940 l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fvpNdi 1019 (1129)
++..|.+++..|..+++++|+||||+|||.+|.. .+||||+|++ ...|.|++||||+++......+.|||||+
T Consensus 594 l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~-----~~~i~i~~~rHP~le~~~~~~~~~V~ndv 666 (918)
T 3thx_B 594 FLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQ--GDYCRPTVQE-----ERKIVIKNGRHPVIDVLLGEQDQYVPNNT 666 (918)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTS--SSCBCCEEES-----SCEEEEEEECCHHHHHHTCSCSSSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcCCcccC-----CCcEEEEeccchhhhhhhccCCceecccc
Confidence 9999999999999999999999999999999974 4799999985 24799999999999842112357999999
Q ss_pred ccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHH
Q 001187 1020 TIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETAL 1099 (1129)
Q Consensus 1020 ~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~ 1099 (1129)
+|+. ..+++++||||||||||||||++|++++|||+|+||||+.+.++++|+||+|+|..|++..+.|||++||.+++.
T Consensus 667 sl~~-~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~ 745 (918)
T 3thx_B 667 DLSE-DSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAE 745 (918)
T ss_dssp EECT-TSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHH
T ss_pred cccC-CCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHH
Confidence 9986 457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1100 MLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1100 il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
|++.+++++||||||+|+||++.+|.+|+
T Consensus 746 il~~a~~p~LlLLDEP~~GlD~~~~~~i~ 774 (918)
T 3thx_B 746 IIRKATSQSLVILDELGRGTSTHDGIAIA 774 (918)
T ss_dssp HHHHCCTTCEEEEESTTTTSCHHHHHHHH
T ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999986
No 3
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=5.7e-119 Score=1126.42 Aligned_cols=692 Identities=26% Similarity=0.420 Sum_probs=570.0
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEEeeCceEEEehhhHHHHhhhcceeeecC------CCCcCCcCcccHhHHHHHHHHcCC
Q 001187 326 NLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG------EQPHCGFPERNFSMNVEKLARKGY 399 (1129)
Q Consensus 326 ~~TP~~~Qyw~iK~~~~D~vlffkvGkFYEly~~DA~i~a~~L~L~~t~g------~~p~~GfPe~sl~~y~~kLV~~Gy 399 (1129)
++||||+|||+||++|||+|||||||||||||++||+++|++|+|++|++ ++||||||+|+++.|+++||++||
T Consensus 9 ~~tp~~~qy~~ik~~~~d~~lffr~GdFYE~f~~DA~~~a~~l~i~lt~r~~~~~~~~pm~GvP~~~~~~yl~~Lv~~G~ 88 (800)
T 1wb9_A 9 AHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGE 88 (800)
T ss_dssp GSCHHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEECCSSSCCEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCcEEeccccCCCCcCCccCCCHHHHHHHHHHHHHCCC
Confidence 56999999999999999999999999999999999999999999999975 379999999999999999999999
Q ss_pred eEEEEecCCChhHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEE
Q 001187 400 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVV 479 (1129)
Q Consensus 400 KVavvEQ~Et~~~~~~r~k~~~~~~kvv~Rev~~V~TpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~~Gva~v 479 (1129)
|||||||+|+|... .++|+|+||+|+||||+++++++.. ..+|||+||++.. ..||+||+
T Consensus 89 kVai~eQ~e~~~~~----------k~~v~R~v~~v~TpGT~~~~~~l~~-~~~n~l~ai~~~~---------~~~Gla~~ 148 (800)
T 1wb9_A 89 SVAICEQIGDPATS----------KGPVERKVVRIVTPGTISDEALLQE-RQDNLLAAIWQDS---------KGFGYATL 148 (800)
T ss_dssp CEEEEEECSCGGGC----------SSSCCEEEEEEECTTTCCCGGGSCT-TSCCCEEEEEECS---------SCEEEEEE
T ss_pred eEEEEEccCCcccc----------CCcceEEEEEEecCCcccccccccC-CCCcEEEEEEEcC---------CEEEEEEE
Confidence 99999999999641 2699999999999999999988864 4689999999743 36999999
Q ss_pred EccCCeEEEEEecCcchhHHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhHHHHHHHHH
Q 001187 480 DVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY 559 (1129)
Q Consensus 480 D~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIl~~~~~ls~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 559 (1129)
|++||+|++++|.| +++|.+.|.+++|+|||++.+..+.. +... ...+.. .+ ..+|+...+.+.|.++|
T Consensus 149 D~stg~~~~~~~~d---~~~l~~~l~~~~P~Eil~~~~~~~~~----l~~~--~~~~~~-~~-~~~f~~~~~~~~l~~~~ 217 (800)
T 1wb9_A 149 DISSGRFRLSEPAD---RETMAAELQRTNPAELLYAEDFAEMS----LIEG--RRGLRR-RP-LWEFEIDTARQQLNLQF 217 (800)
T ss_dssp CTTTCCEEEECCCS---HHHHHHHHHHHCCSEEEEETTCCCGG----GTTT--CSSEEE-EC-GGGGCHHHHHHHHHHHH
T ss_pred ECCCCEEEEEEecC---HHHHHHHHHhcCCeEEEEcCCCChHH----Hhhc--ccceEE-cc-ccccChhHHHHHHHHHh
Confidence 99999999999987 78999999999999999998654321 1111 111222 23 35677777777777777
Q ss_pred hhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhhcccceeecCCCCCc
Q 001187 560 NRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFG 639 (1129)
Q Consensus 560 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~~~ 639 (1129)
+..+- ..+.. .+..++++|+|++|.||+.++... +.++..+.
T Consensus 218 ~~~~l---------------------------~~~~~--~~~~~~~~a~gall~Yl~~~~~~~-~~~~~~~~-------- 259 (800)
T 1wb9_A 218 GTRDL---------------------------VGFGV--ENAPRGLCAAGCLLQYAKDTQRTT-LPHIRSIT-------- 259 (800)
T ss_dssp TCSCS---------------------------GGGTC--TTCHHHHHHHHHHHHHHHHHHCSC-CTTCCCCE--------
T ss_pred Cccch---------------------------hhccc--cCcHHHHHHHHHHHHHHHHhhhhc-cccccccE--------
Confidence 52110 00000 123578999999999999987542 33333332
Q ss_pred cCCCCCeeecCHHHHHhccCcccccCCCCcccHHHHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHcCCchh
Q 001187 640 DMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPF 719 (1129)
Q Consensus 640 ~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~ 719 (1129)
.+...+||.||.+|++||||+++.+ |+.+||||+++|+|+|+||+|+||+||++||+|++.|++|||+|++|.. +
T Consensus 260 ~~~~~~~m~ld~~t~~~LEl~~~~~-~~~~gSL~~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~----~ 334 (800)
T 1wb9_A 260 MEREQDSIIMDAATRRNLEITQNLA-GGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQD----F 334 (800)
T ss_dssp ECCGGGBCEECHHHHHHTTSSSCTT-SCSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGG----G
T ss_pred EEccCCEEEecHHHHHhccCcccCC-CCccccHHHHhCCCcCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHH----H
Confidence 3345679999999999999999876 4558999999999999999999999999999999999999999999984 6
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHh
Q 001187 720 ALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHH 799 (1129)
Q Consensus 720 ~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~ 799 (1129)
+..++..|++++|+||+++|+..+. . ..+++..+..+|..+..+... +....++.|..
T Consensus 335 ~~~l~~~L~~~~Dler~l~r~~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~-------l~~~~~~~L~~ 392 (800)
T 1wb9_A 335 TAGLQPVLRQVGDLERILARLALRT-A--------------RPRDLARMRHAFQQLPELRAQ-------LETVDSAPVQA 392 (800)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHTC-C--------------CHHHHHHHHHHHTTHHHHHHH-------HHSCCCHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHcCC-C--------------CHHHHHHHHHHHHHHHHHHHH-------HHhcCcHHHHH
Confidence 7789999999999999999997531 1 124555666666655544332 22333445555
Q ss_pred hhcCCCCchhHHHHHHHHHhhhchhh--hcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEe
Q 001187 800 ILTPGKGLPAIVSILKHFKDAFDWVE--ANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTI 877 (1129)
Q Consensus 800 l~~~~~~~~~l~~~l~~i~~~~d~~~--~~~~g~ii~~~g~d~~lD~~~~~l~~l~~~L~~~l~~~~~~l~~~~i~~~~~ 877 (1129)
+... ++.+..+.+.|..+||... ...+|.++ ++|++++||++++.++++++.+.+++++.++.++.+.++....
T Consensus 393 l~~~---l~~~~~l~~~i~~~i~~~~~~~~~~~~~I-~~g~~~eLd~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~~ 468 (800)
T 1wb9_A 393 LREK---MGEFAELRDLLERAIIDTPPVLVRDGGVI-ASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFN 468 (800)
T ss_dssp HHHH---HCCCHHHHHHHHHHBCSSCCSCSTTCCCB-CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred HHHh---cccHHHHHHHHHHHhCcCchhhhhcCCee-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 4422 2344556666778887431 12334443 8999999999999999999999998888888888887777777
Q ss_pred CCceEEEEccccccCCCCCcEEEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001187 878 GKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAA 957 (1129)
Q Consensus 878 ~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ 957 (1129)
+..+|+|+|+....+++|.+|++.++.+|..||+||+++++++++.++++++..++..++.+|...+.++...|..++++
T Consensus 469 ~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~ 548 (800)
T 1wb9_A 469 AVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASA 548 (800)
T ss_dssp TTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred CcceEEEEEeccccccCCcceEEeeeccCCCEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccceeecCCCCCCCCcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCC
Q 001187 958 TAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNM 1037 (1129)
Q Consensus 958 la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~ 1037 (1129)
+|+|||++|||.+|..+ +||||+|.+ .+.|.|++||||+++.. + ++.|||||++|+ ..+++++||||||
T Consensus 549 la~lD~l~s~A~~a~~~--~~~~P~~~~-----~~~i~i~~~rHP~le~~-~-~~~~vlndisl~--~~g~i~~ItGpNG 617 (800)
T 1wb9_A 549 LAELDVLVNLAERAYTL--NYTCPTFID-----KPGIRITEGRHPVVEQV-L-NEPFIANPLNLS--PQRRMLIITGPNM 617 (800)
T ss_dssp HHHHHHHHHHHHHHHHT--TCBCCEECS-----SSCEEEEEECCTTHHHH-C-SSCCCCEEEEEC--SSSCEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHhC--CCcccEECC-----CCCEEEEeccccEEEcc-C-CCceeeeccccc--CCCcEEEEECCCC
Confidence 99999999999999865 799999974 35799999999999853 2 457999999998 3578999999999
Q ss_pred CchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCC
Q 001187 1038 GGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGR 1117 (1129)
Q Consensus 1038 ~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGR 1117 (1129)
||||||||+++++++|+|+|+||||+.+.++++++||+++|+.|++..+.|+|+.||.+++.|++.+++++||||||+|+
T Consensus 618 sGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~ 697 (800)
T 1wb9_A 618 GGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGR 697 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCC
T ss_pred CChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHhhh
Q 001187 1118 GTSTSDGQAIA 1128 (1129)
Q Consensus 1118 GTst~DG~AIA 1128 (1129)
||++.||.+|+
T Consensus 698 Gtd~~d~~~i~ 708 (800)
T 1wb9_A 698 GTSTYDGLSLA 708 (800)
T ss_dssp CSSSSHHHHHH
T ss_pred CCChhHHHHHH
Confidence 99999999874
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=1e-114 Score=1082.05 Aligned_cols=660 Identities=31% Similarity=0.439 Sum_probs=543.8
Q ss_pred cCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEehhhHHHHhhhcceeeecC-----CCCcCCcCcccHhHHHHHHHHcCC
Q 001187 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQPHCGFPERNFSMNVEKLARKGY 399 (1129)
Q Consensus 325 ~~~TP~~~Qyw~iK~~~~D~vlffkvGkFYEly~~DA~i~a~~L~L~~t~g-----~~p~~GfPe~sl~~y~~kLV~~Gy 399 (1129)
.++||||||||+||++|||+|||||||||||||++||+++|++|||++|++ ++||||||+|+++.|+++||++||
T Consensus 11 ~~~tp~~~qy~~iK~~~~d~~l~~r~GdFYE~f~~DA~~~~~~L~i~lt~r~~~~~~~pm~GvP~~~~~~y~~~Lv~~G~ 90 (765)
T 1ewq_A 11 GPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEAYAERLLKMGF 90 (765)
T ss_dssp SCCCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEEECSSCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCceeEEcHHHHHHHHHHhCcEEeccCCCCCCCceecCcHHHHHHHHHHHHHCCC
Confidence 378999999999999999999999999999999999999999999999975 479999999999999999999999
Q ss_pred eEEEEecCCChhHHHHHhhhcCCCCceeeeeEEEEeeCcceeeccccCCCCCCcEEEEEEecCCCCCCCCCCcEEEEEEE
Q 001187 400 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVV 479 (1129)
Q Consensus 400 KVavvEQ~Et~~~~~~r~k~~~~~~kvv~Rev~~V~TpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~~Gva~v 479 (1129)
|||||||+|+|+.. .++|+|+||+|+||||++|++++ . ..+|||+||+ .. ..||+||+
T Consensus 91 kVai~eQ~e~~~~~----------kg~v~R~v~~v~TpGT~~~~~~l-~-~~~n~l~ai~-~~---------~~~Gla~~ 148 (765)
T 1ewq_A 91 RLAVADQVEPAEEA----------EGLVRREVTQLLTPGTLLQESLL-P-REANYLAAIA-TG---------DGWGLAFL 148 (765)
T ss_dssp CEEEEEECSCGGGC----------SSSCCEEEEEEECGGGCCCGGGS-C-SSCCCEEEEE-ES---------SSEEEEEE
T ss_pred EEEEEecCCCcccc----------cCceeEEEEEEEcCceecchhhc-C-CCCcEEEEEE-eC---------CEEEEEEE
Confidence 99999999999742 25999999999999999999988 3 4789999998 21 35999999
Q ss_pred EccCCeEEEEEecCcchhHHHHHHHHccCccEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhHHHHHHHHH
Q 001187 480 DVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY 559 (1129)
Q Consensus 480 D~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIl~~~~~ls~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 559 (1129)
|++||+|++++|.|+ ++|.+.|.+++|+|||++.+. .. +.. .+..+...|
T Consensus 149 D~stg~~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~-----~~-~~~---------------------~~~~~~~~f 198 (765)
T 1ewq_A 149 DVSTGEFKGTVLKSK---SALYDELFRHRPAEVLLAPEL-----LE-NGA---------------------FLDEFRKRF 198 (765)
T ss_dssp ETTTTEEEEEEESSH---HHHHHHHHHHCCSEEEECHHH-----HH-CHH---------------------HHHHHHHHC
T ss_pred ECCCCEEEEEEecCH---HHHHHHHHhcCCeEEEecCCh-----HH-HHH---------------------Hhhhccccc
Confidence 999999999999875 689999999999999997531 00 000 000111111
Q ss_pred hhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhhcccceeecCCCCCc
Q 001187 560 NRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFG 639 (1129)
Q Consensus 560 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~~f~~~~~~~~~ 639 (1129)
.. ..+ . ..++.. . ..+ ..+++|+|+++.||+.++... +. +..+.
T Consensus 199 ~~---~~l-------~----~~~~~~-------~----~~~-~~~~~a~g~ll~Yl~~~~~~~-~~-~~~~~-------- 242 (765)
T 1ewq_A 199 PV---MLS-------E----APFEPE-------G----EGP-LALRRARGALLAYAQRTQGGA-LS-LQPFR-------- 242 (765)
T ss_dssp CS---EEE-------C----CCCCCC-------S----SSC-HHHHHHHHHHHHHHHHHHTSC-CC-CCCCE--------
T ss_pred CH---HHH-------H----HHhccc-------c----cCC-HHHHHHHHHHHHHHHHhhhcc-cc-cCCcE--------
Confidence 11 000 0 000000 0 012 578999999999999887542 22 33333
Q ss_pred cCCCCCeeecCHHHHHhccCcccccCCCCcccHHHHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHcCCchh
Q 001187 640 DMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPF 719 (1129)
Q Consensus 640 ~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~RldaVe~L~~~~~~~ 719 (1129)
.+...+||.||.+|++||||+.|.+ | +||||++||+|+|+||+|+||+||++||+|++.|++|||+|++|.. +...
T Consensus 243 ~~~~~~~m~lD~~t~~~LEl~~~~~-~--~gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~-~~~~ 318 (765)
T 1ewq_A 243 FYDPGAFMRLPEATLRALEVFEPLR-G--QDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVR-EGAL 318 (765)
T ss_dssp ECCGGGSCBCCHHHHHHTTSSSCSS-S--CCCHHHHHCCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH-CHHH
T ss_pred EECCCCeEEecHHHHHhCcCccCCC-c--cchHHHHhCCCCCHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHh-CHHH
Confidence 2345679999999999999999875 4 7999999999999999999999999999999999999999999996 5567
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHh
Q 001187 720 ALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHH 799 (1129)
Q Consensus 720 ~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~ 799 (1129)
+..++..|++++|+||++.|+..+. . ..+++..+..+|..+..+.. .+.
T Consensus 319 ~~~l~~~L~~~~Dler~l~r~~~~~-~--------------~~~dl~~l~~~l~~~~~l~~-------~l~--------- 367 (765)
T 1ewq_A 319 REGVRRLLYRLADLERLATRLELGR-A--------------SPKDLGALRRSLQILPELRA-------LLG--------- 367 (765)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHTTC-C--------------CHHHHHHHHHHHHHHHHHHH-------HHC---------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCC-C--------------CHHHHHHHHHHHHHHHHHHH-------HHH---------
Confidence 7889999999999999999996431 1 12344444444443332221 111
Q ss_pred hhcCCCCchhHHHHHHHHHhhhchhh--hcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEe
Q 001187 800 ILTPGKGLPAIVSILKHFKDAFDWVE--ANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTI 877 (1129)
Q Consensus 800 l~~~~~~~~~l~~~l~~i~~~~d~~~--~~~~g~ii~~~g~d~~lD~~~~~l~~l~~~L~~~l~~~~~~l~~~~i~~~~~ 877 (1129)
+ ...++.+..+.+.|..+|+... ...+|.++ ++|++++||++++.++++++.|.++.+++++.++.+.++....
T Consensus 368 l---~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i-~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~~ 443 (765)
T 1ewq_A 368 E---EVGLPDLSPLKEELEAALVEDPPLKVSEGGLI-REGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYN 443 (765)
T ss_dssp T---TSCCCCCHHHHHHHHHHBCSSCCSCTTSSCCB-CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred H---HhccccHHHHHHHHHHHhcccchhhhccCCcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEec
Confidence 1 1123345556666777776421 11234443 8999999999999999999999998888888888777777666
Q ss_pred CCceEEEEccccccCCCCCcEEEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001187 878 GKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAA 957 (1129)
Q Consensus 878 ~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ 957 (1129)
+..+|+|+|+....+++|++|+..++.++..||+||+++++++++.++++++..++..++.+|...+..+...|..+.++
T Consensus 444 ~~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~ 523 (765)
T 1ewq_A 444 AVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARI 523 (765)
T ss_dssp TTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cceeEEEEeehHhhhcCCcceEEEEeccCCcEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccceeecCCCCCCCCcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCC
Q 001187 958 TAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNM 1037 (1129)
Q Consensus 958 la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~ 1037 (1129)
+++|||++|+|.+|... +||||+| + ..|.|+++|||+++. .+.|||||++|+ +++++||||||
T Consensus 524 la~LD~l~s~a~~a~~~--~~~~P~~-~------~~i~i~~~rHP~le~----~~~~vl~disl~----g~i~~I~GpNG 586 (765)
T 1ewq_A 524 LAELDVYAALAEVAVRY--GYVRPRF-G------DRLQIRAGRHPVVER----RTEFVPNDLEMA----HELVLITGPNM 586 (765)
T ss_dssp HHHHHHHHHHHHHHHHH--TCBCCEE-S------SSEEEEEECCTTGGG----TSCCCCEEEEES----SCEEEEESCSS
T ss_pred HHHHHHHHhhHHHHHhC--Cceeecc-C------CcEEEEEeECceEcc----CCceEeeeccCC----CcEEEEECCCC
Confidence 99999999999999865 6999999 2 369999999999974 347999999997 57999999999
Q ss_pred CchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCcEEEEeCCCC
Q 001187 1038 GGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGR 1117 (1129)
Q Consensus 1038 ~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~sLvllDElGR 1117 (1129)
||||||||+++++++|+|+|++|||..+.+++++++|+++|..|++..|.|+|+.||.+++.|++.+++++||||||+||
T Consensus 587 sGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 587 AGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp SSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred CChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHhhh
Q 001187 1118 GTSTSDGQAIA 1128 (1129)
Q Consensus 1118 GTst~DG~AIA 1128 (1129)
||++.||.++|
T Consensus 667 GTs~lD~~~~~ 677 (765)
T 1ewq_A 667 GTSSLDGVAIA 677 (765)
T ss_dssp TSCHHHHHHHH
T ss_pred CCCCcCHHHHH
Confidence 99999999875
No 5
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=1.1e-109 Score=1052.67 Aligned_cols=725 Identities=24% Similarity=0.334 Sum_probs=554.8
Q ss_pred cCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEehhhHHHHhhhccee-----eecC----CCCcCCcCcccHhHHHHH-H
Q 001187 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-----YMKG----EQPHCGFPERNFSMNVEK-L 394 (1129)
Q Consensus 325 ~~~TP~~~Qyw~iK~~~~D~vlffkvGkFYEly~~DA~i~a~~L~L~-----~t~g----~~p~~GfPe~sl~~y~~k-L 394 (1129)
.+.||||+|||+||++|+|+|+||++|+|||+|++||+.+|++|+++ ++++ ++|+|+||.++|+.|+++ |
T Consensus 14 ~~~~~f~~~y~~Lk~k~~dtv~~F~~GdfYe~~~~DA~~vA~~l~~t~~~~k~~~~~~~~~~~~v~i~~~~~~~~l~~~L 93 (934)
T 3thx_A 14 AAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLL 93 (934)
T ss_dssp HHHHHHHHHHHTSCCCCTTEEEEEECSSEEEEETHHHHHHHHHTTSSSTTCEEESSSSCCCEEEEEEEHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhccccCCCeEEEEEcCCeeeeehhhHHHHHHHHhhhhhhhhccCCCCCCCCCeeeeCHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999874 4433 468999999999999997 9
Q ss_pred HHcCCeEEEEecCCChhHHHHHhhhcCCCCceeeeeEEEEeeCcceeec-cccCCCCC---CcEEEEEEecCCCCCCCCC
Q 001187 395 ARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEG-ELLSANPD---ASYLMALTESNQSPASQST 470 (1129)
Q Consensus 395 V~~GyKVavvEQ~Et~~~~~~r~k~~~~~~kvv~Rev~~V~TpGTl~d~-~~l~~~~~---~~yllaI~e~~~~~~~~~~ 470 (1129)
+++||||+||||.+++.. .+.++|+|++++||||+++. ++|..+.+ ++||+||++... +.
T Consensus 94 l~~g~rVei~~q~~~~~~-----------~~~~~r~l~~~~TPGnl~~~ed~L~~~~d~~~~~~l~AIk~~~~-----~~ 157 (934)
T 3thx_A 94 LVRQYRVEVYKNRAGNKA-----------SKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAV-----DG 157 (934)
T ss_dssp HTTCCEEEEEEECC---------------CCCCCEEEEEEEBTTBCTTCHHHHC--------CCEEEEEECCS-----SS
T ss_pred HHcCCEEEEEecCCcccc-----------cCccceEEEEEECCCcHHHHHHHhhccccccccceEEEEEEeec-----CC
Confidence 999999999999776421 24689999999999999985 34432222 689999998532 23
Q ss_pred CcEEEEEEEEccCCeEEEEEecCcchhHHHHHHHHccCccEEEecCCCCChHHHHHH--HhhcCCCccccccCCccccCh
Q 001187 471 DRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAI--LRHTRNPLVNDLVPLSEFWDA 548 (1129)
Q Consensus 471 ~~~~Gva~vD~stg~~~l~qf~Dd~~~s~L~t~L~~~~P~EIl~~~~~ls~~t~~~l--~~~~~~~~~~~~~~~~~f~~~ 548 (1129)
...||+||+|++||+|++++|.|+..+++|.+.|.+++|+|||+|....+.+..++. .... .+.....+. .+|+.
T Consensus 158 ~~~~Gla~~D~stge~~~~~~~d~~~~~~l~~~l~~~~P~Eil~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~-~~f~~ 234 (934)
T 3thx_A 158 QRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRG--GILITERKK-ADFST 234 (934)
T ss_dssp SCEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHHHHH--TCEEEEECG-GGGCC
T ss_pred CcEEEEEEEECCCCeEEEEecCCchHHHHHHHHHHhCCCeEEEeeCCCCcccHHHHHHHHhhc--CceEEecch-hhcCH
Confidence 578999999999999999999999999999999999999999999876654332221 1111 111122232 34566
Q ss_pred hhHHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhhccc
Q 001187 549 ETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFA 628 (1129)
Q Consensus 549 ~~~~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~al~Algall~YL~~~~l~~~ll~~~ 628 (1129)
..+.+.+.+++....... .....++.. +.+++++|+|++|.||+.++... .....
T Consensus 235 ~~~~~~l~~~~~~~~~~~---------------~~~~~~~~~---------~~~~~~~a~gall~Yl~~~~~~~-~~~~~ 289 (934)
T 3thx_A 235 KDIYQDLNRLLKGKKGEQ---------------MNSAVLPEM---------ENQVAVSSLSAVIKFLELLSDDS-NFGQF 289 (934)
T ss_dssp SSHHHHHHHHBCCCTTSC---------------CCGGGCGGG---------GCHHHHHHHHHHHHHHTGGGCGG-GTTCB
T ss_pred HHHHHHHHHHhccccccc---------------ccccccccc---------ccHHHHHHHHHHHHHHHHhcCcc-ccccc
Confidence 666666666654322100 001122211 23689999999999999765432 22111
Q ss_pred ceeecCCCCCccCCCCCeeecCHHHHHhccCcccccCCC-CcccHHHHHhhhcChHHHHHHHHhhhCCCCCHHHHHHHHH
Q 001187 629 KFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGD-SSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQD 707 (1129)
Q Consensus 629 ~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~g~-~~gSL~~lLn~c~T~~GkRlLr~wl~~PL~d~~~I~~Rld 707 (1129)
.+. .+...+||.||++|++||||++|.++++ ..||||++||+|+|+||+||||+||++||+|++.|++|||
T Consensus 290 ~~~--------~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~~~SL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d 361 (934)
T 3thx_A 290 ELT--------TFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLN 361 (934)
T ss_dssp EEE--------ECCGGGBCEECHHHHHHTTSCC---------CCHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHH
T ss_pred cce--------EEcCCCeEEeCHHHHhhccccccCCCCCCCCCcHHHHhccCCCHHHHHHHHHHHhCcCCCHHHHHHHHH
Confidence 111 2234679999999999999999986643 3789999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchhHHHHHH-hcCCCCCHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001187 708 AVAGLRGVNQPFALEFRK-ALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLG 786 (1129)
Q Consensus 708 aVe~L~~~~~~~~~~lr~-~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~ 786 (1129)
+|++|++ +..++..++. .|+++|||||+++|++.+.. ..+++..+..+|..+..+.+.+..
T Consensus 362 ~Ve~l~~-~~~~~~~l~~~~L~~i~DleRl~~ri~~~~~---------------~~~dl~~l~~~l~~~~~l~~~l~~-- 423 (934)
T 3thx_A 362 LVEAFVE-DAELRQTLQEDLLRRFPDLNRLAKKFQRQAA---------------NLQDCYRLYQGINQLPNVIQALEK-- 423 (934)
T ss_dssp HHHHHHS-CHHHHHHHHTTTGGGCCCHHHHHHHHHTTCC---------------CHHHHHHHHHHHTTHHHHHHHHHH--
T ss_pred HHHHHhh-ChHHHHHHHHHHhcCCCCHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 9999996 6677888997 69999999999999975321 123445555555544443332211
Q ss_pred HHHhhcchhhHHhh-hcC-CCCchhHHHHHHHHHhhhchhhhcCCCCeeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001187 787 AILENTESRQLHHI-LTP-GKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQR 864 (1129)
Q Consensus 787 ~~l~~~~s~~l~~l-~~~-~~~~~~l~~~l~~i~~~~d~~~~~~~g~ii~~~g~d~~lD~~~~~l~~l~~~L~~~l~~~~ 864 (1129)
. ....+..+..+ +.. ...+..+..+.+.|..+||.... ++|..++++|++++||++++.+.++++.|.+++++++
T Consensus 424 -~-~~~~~~~l~~~~~~~l~~~~~~l~~~~~~i~~~i~~~~~-~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~ 500 (934)
T 3thx_A 424 -H-EGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQV-ENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAA 500 (934)
T ss_dssp -T-CCSSSTTGGGGTHHHHHHHHHHHHHHHHHHHTTBCTTGG-GTTCCCBCTTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -c-ccccchHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcchh-hcCCceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001222211 000 01123455566677788876443 4565566999999999999999999999999999888
Q ss_pred HHhCC---CCceEEEeCCceEEEEccccccCC--CCCcEEEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001187 865 KLLGD---TSITYVTIGKDLYLLEVPESLRGS--VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939 (1129)
Q Consensus 865 ~~l~~---~~i~~~~~~~~~y~iev~~~~~~~--vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~ 939 (1129)
+.++. .++++......+|+|+|+...... .|.+|+..+++++..||+||+++++++++.++++++...+..++.+
T Consensus 501 ~~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~e~~i~~~ 580 (934)
T 3thx_A 501 RDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKE 580 (934)
T ss_dssp HHSCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCCCccceEEEEEeccceEEEEEEechhhccCCCCCcEEEEcccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765 456666666789999998654333 3678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCCCCCCCcEEEeccCCCccccccCCCCccccccc
Q 001187 940 LIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDI 1019 (1129)
Q Consensus 940 l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fvpNdi 1019 (1129)
|+..+.++...|..+++++|+||||+|||.+|.....+||||+|.+. ....|.|+++|||+++.. ..+.|||||+
T Consensus 581 l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~---~~~~i~i~~~rHP~le~~--~~~~~v~ndi 655 (934)
T 3thx_A 581 IVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEK---GQGRIILKASRHACVEVQ--DEIAFIPNDV 655 (934)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECT---TSCEEEEEEECCTTTTTC----CCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCeeccC---CCcceEeecCccchhhhc--CCceeecccc
Confidence 99999999999999999999999999999999865568999999852 135799999999999853 2457999999
Q ss_pred ccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHH
Q 001187 1020 TIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETAL 1099 (1129)
Q Consensus 1020 ~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~ 1099 (1129)
+|+. ..+++++||||||||||||||++|++++|||+|+||||+.+.++++|+||+|+|..|++..+.||||+||.+++.
T Consensus 656 sl~~-~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~ 734 (934)
T 3thx_A 656 YFEK-DKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETAS 734 (934)
T ss_dssp EEET-TTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHH
T ss_pred eeec-CCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHH
Confidence 9986 457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHhhh
Q 001187 1100 MLSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1129)
Q Consensus 1100 il~~at~~sLvllDElGRGTst~DG~AIA 1128 (1129)
||+.+++++||||||+|+||++.||.+||
T Consensus 735 il~~a~~~sLlLLDEp~~GlD~~~~~~i~ 763 (934)
T 3thx_A 735 ILRSATKDSLIIIDELGRGTSTYDGFGLA 763 (934)
T ss_dssp HHHHCCTTCEEEEESCSCSSCHHHHHHHH
T ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999985
No 6
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.47 E-value=1.8e-07 Score=102.76 Aligned_cols=109 Identities=20% Similarity=0.267 Sum_probs=70.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc---ccchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a---~l~~~ 1070 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. +-.++| |||.... .+++.
T Consensus 29 ~vl~~vsl~i-~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~-~v~q~~~l~~~ltv~ 106 (256)
T 1vpl_A 29 EILKGISFEI-EEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS-YLPEEAGAYRNMQGI 106 (256)
T ss_dssp EEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE-EECTTCCCCTTSBHH
T ss_pred EEEEeeEEEE-cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE-EEcCCCCCCCCCcHH
Confidence 4677788876 457899999999999999999997553 112333 6666532 12333
Q ss_pred hhh---------------------hhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1071 DRI---------------------FVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1071 d~i---------------------~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~DG 1124 (1129)
+.+ +.++|..+.+....++++..+++...| ..-+.++.|+||||+..|-++.--
T Consensus 107 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~ 182 (256)
T 1vpl_A 107 EYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 182 (256)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHH
Confidence 332 233343333333345666655554444 345889999999999999987643
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.43 E-value=1.9e-07 Score=100.45 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=69.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH------------------------HH-hHcCCeecCCCc---
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------------------------IL-AQVGADVPAEIF--- 1065 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v------------------------il-AQiG~~VPA~~a--- 1065 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. +. .++| |||....
T Consensus 18 ~~l~~vsl~i-~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~v~q~~~l~~ 95 (224)
T 2pcj_A 18 EILKGISLSV-KKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLG-FVFQFHYLIP 95 (224)
T ss_dssp EEEEEEEEEE-ETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEE-EECSSCCCCT
T ss_pred eeEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEE-EEecCcccCC
Confidence 4667788776 457899999999999999999987543 01 2354 6766532
Q ss_pred ccchhhhh---------------------hhccCccchHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChHH
Q 001187 1066 EISPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1066 ~l~~~d~i---------------------~trig~~d~i~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~D 1123 (1129)
.+++.+.+ +.++|..+......++++..+++...|. .-+.++.++||||+..|-++.-
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (224)
T 2pcj_A 96 ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175 (224)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHH
T ss_pred CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence 12333332 2333333333333456666665544444 4578999999999999988754
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.39 E-value=3.3e-07 Score=101.62 Aligned_cols=111 Identities=16% Similarity=0.145 Sum_probs=72.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-----------------------HHhHcCCeecCCC----cc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-----------------------ILAQVGADVPAEI----FE 1066 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-----------------------ilAQiG~~VPA~~----a~ 1066 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. +-.++| |||... ..
T Consensus 22 ~~L~~isl~i-~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig-~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 22 HALKGINMNI-KRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG-IVFQDPDNQLFS 99 (275)
T ss_dssp EEEEEEEEEE-ETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE-EECSSGGGTCCS
T ss_pred eEEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE-EEEcCccccccc
Confidence 4778888876 467899999999999999999987543 112244 676642 12
Q ss_pred cchhhhh---------------------hhccCccchHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChHHH
Q 001187 1067 ISPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1067 l~~~d~i---------------------~trig~~d~i~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~DG 1124 (1129)
+++.+.| +.++|..+....-.++++..+++...|. .-+.++.++||||+-.|-++..-
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~ 179 (275)
T 3gfo_A 100 ASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179 (275)
T ss_dssp SBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 3333332 3334443333333456666666544443 35889999999999999987654
Q ss_pred Hh
Q 001187 1125 QA 1126 (1129)
Q Consensus 1125 ~A 1126 (1129)
..
T Consensus 180 ~~ 181 (275)
T 3gfo_A 180 SE 181 (275)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.37 E-value=3.5e-07 Score=104.89 Aligned_cols=131 Identities=14% Similarity=0.131 Sum_probs=82.0
Q ss_pred CCcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------------
Q 001187 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------------------- 1051 (1129)
Q Consensus 991 ~~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v------------------- 1051 (1129)
.+.|++++...-+-.. .....+-+|++|.. ..+.+++|.||||+|||||||+++.+.
T Consensus 22 ~~mi~v~~ls~~y~~~---~~~~~aL~~vsl~i-~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 22 KHMIKLSNITKVFHQG---TRTIQALNNVSLHV-PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp -CCEEEEEEEEEEECS---SSEEEEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCH
T ss_pred CceEEEEeEEEEeCCC---CCCeEEEEeeEEEE-cCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence 3467776654322100 01124678888887 467899999999999999999998653
Q ss_pred -----HHhHcCCeecCCCc---ccchhhh---------------------hhhccCccchHhhcccchHHHHHHHHHHHH
Q 001187 1052 -----ILAQVGADVPAEIF---EISPVDR---------------------IFVRMGAKDHIMAGQSTFLTELSETALMLS 1102 (1129)
Q Consensus 1052 -----ilAQiG~~VPA~~a---~l~~~d~---------------------i~trig~~d~i~~g~StF~~em~e~~~il~ 1102 (1129)
+-.+|| |||.... .+++.+. ++.++|..+....-.++++..+++...|.+
T Consensus 98 ~~~~~~r~~Ig-~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 98 SELTKARRQIG-MIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HHHHHHHTTEE-EECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCcEE-EEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 112344 6666532 2233333 333444444333444667666666555554
Q ss_pred -hCCCCcEEEEeCCCCCCChHHHHh
Q 001187 1103 -SATRNSLVVLDELGRGTSTSDGQA 1126 (1129)
Q Consensus 1103 -~at~~sLvllDElGRGTst~DG~A 1126 (1129)
-+.++.++||||...|-++..-..
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~ 201 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRS 201 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHhcCCCEEEEECCCccCCHHHHHH
Confidence 478999999999999988765443
No 10
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.35 E-value=2.7e-07 Score=101.86 Aligned_cols=113 Identities=19% Similarity=0.159 Sum_probs=71.5
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc---ccch
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISP 1069 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a---~l~~ 1069 (1129)
..+-+|++|.. ..+.+++|.||||+|||||||.++.+. -+++.-.|||.... .+++
T Consensus 24 ~~vL~~vsl~i-~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 102 (266)
T 4g1u_C 24 QALINDVSLHI-ASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSV 102 (266)
T ss_dssp EEEEEEEEEEE-ETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBH
T ss_pred eeEEEeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCH
Confidence 45677888876 457899999999999999999998543 12333346665431 2233
Q ss_pred hhh-------------------hhhccCccchHhhcccchHHHHHHHHHHHH-hCC------CCcEEEEeCCCCCCChHH
Q 001187 1070 VDR-------------------IFVRMGAKDHIMAGQSTFLTELSETALMLS-SAT------RNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1070 ~d~-------------------i~trig~~d~i~~g~StF~~em~e~~~il~-~at------~~sLvllDElGRGTst~D 1123 (1129)
.+. ++.++|..+......++++..+++...|.+ -+. ++.|+||||+..|-++..
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~ 182 (266)
T 4g1u_C 103 SEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYH 182 (266)
T ss_dssp HHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHH
T ss_pred HHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHH
Confidence 332 333444443333344556666655444433 244 889999999999998765
Q ss_pred HHh
Q 001187 1124 GQA 1126 (1129)
Q Consensus 1124 G~A 1126 (1129)
-..
T Consensus 183 ~~~ 185 (266)
T 4g1u_C 183 QQH 185 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 11
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.33 E-value=6.2e-07 Score=95.74 Aligned_cols=107 Identities=20% Similarity=0.190 Sum_probs=67.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH----------------HhHcCCeecCCCc---ccchhhhh-
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI----------------LAQVGADVPAEIF---EISPVDRI- 1073 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi----------------lAQiG~~VPA~~a---~l~~~d~i- 1073 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+.- -.++| |||.+.. .+++.+.+
T Consensus 23 ~il~~vsl~i-~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~-~v~q~~~~~~~~tv~enl~ 100 (214)
T 1sgw_A 23 PVLERITMTI-EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF-FLPEEIIVPRKISVEDYLK 100 (214)
T ss_dssp EEEEEEEEEE-ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEE-EECSSCCCCTTSBHHHHHH
T ss_pred eEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEE-EEeCCCcCCCCCCHHHHHH
Confidence 4667777776 4578999999999999999999875430 11232 6766532 12333332
Q ss_pred ------------------hhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHH
Q 001187 1074 ------------------FVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1074 ------------------~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~D 1123 (1129)
+.++|..+. ....++++..+++...| ..-+.++.++||||+..|-++.-
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~ 168 (214)
T 1sgw_A 101 AVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168 (214)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTT
T ss_pred HHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 223333322 23344566555554444 44578999999999999988754
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.29 E-value=8.2e-07 Score=96.17 Aligned_cols=111 Identities=14% Similarity=0.243 Sum_probs=70.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH------------------------HH-hHcCCeecCCCc---
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------------------------IL-AQVGADVPAEIF--- 1065 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v------------------------il-AQiG~~VPA~~a--- 1065 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. +. .++| |||....
T Consensus 19 ~~L~~isl~i-~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~-~v~Q~~~l~~ 96 (235)
T 3tif_A 19 YALKNVNLNI-KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIG-FVFQQFNLIP 96 (235)
T ss_dssp EEEEEEEEEE-CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEE-EECTTCCCCT
T ss_pred eeEEeeeEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEE-EEecCCccCC
Confidence 4667788776 457899999999999999999997553 01 1345 6776542
Q ss_pred ccchhhhh------------------------hhccCccchH-hhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCC
Q 001187 1066 EISPVDRI------------------------FVRMGAKDHI-MAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1066 ~l~~~d~i------------------------~trig~~d~i-~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGT 1119 (1129)
.+++.+.+ +..+|..+.+ ..-.++++..+++ ++.+..-+.++.++||||+..|-
T Consensus 97 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~L 176 (235)
T 3tif_A 97 LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176 (235)
T ss_dssp TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 23444443 2223332222 2223455555555 33334458899999999999999
Q ss_pred ChHHHHh
Q 001187 1120 STSDGQA 1126 (1129)
Q Consensus 1120 st~DG~A 1126 (1129)
++..-..
T Consensus 177 D~~~~~~ 183 (235)
T 3tif_A 177 DSKTGEK 183 (235)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 8765443
No 13
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.29 E-value=7.8e-07 Score=97.42 Aligned_cols=109 Identities=19% Similarity=0.205 Sum_probs=67.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH------H--HhHcCCeecCCCc---ccchhhhh---------
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------I--LAQVGADVPAEIF---EISPVDRI--------- 1073 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v------i--lAQiG~~VPA~~a---~l~~~d~i--------- 1073 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+. | -.++| |||.... .+++.+.|
T Consensus 19 ~vl~~isl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~-~v~q~~~~~~~~tv~enl~~~~~~~~~ 96 (253)
T 2nq2_C 19 FLFQQLNFDL-NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIG-FVPQFFSSPFAYSVLDIVLMGRSTHIN 96 (253)
T ss_dssp EEEEEEEEEE-ETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEE-EECSCCCCSSCCBHHHHHHGGGGGGSC
T ss_pred eEEEEEEEEE-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEE-EEcCCCccCCCCCHHHHHHHhhhhhcc
Confidence 4667777766 457899999999999999999998542 1 11222 6665431 22333333
Q ss_pred ----------------hhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1074 ----------------FVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1074 ----------------~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~DG 1124 (1129)
+.++|..+.+....++++..+++...| ..-+.++.++||||+..|-++.--
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~ 164 (253)
T 2nq2_C 97 TFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164 (253)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHH
T ss_pred cccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 222333322223344555555553333 334788999999999999887643
No 14
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.29 E-value=3.5e-07 Score=99.94 Aligned_cols=109 Identities=14% Similarity=0.103 Sum_probs=66.9
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCc---ccchhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPVD 1071 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a---~l~~~d 1071 (1129)
+-+|++|.. ..+.+++|+||||+|||||||.++.+. +-.++| |||.... .+++.+
T Consensus 15 vl~~vsl~i-~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 15 RLGPLSGEV-RAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRA-YLSQQQTPPFATPVWH 92 (249)
T ss_dssp TEEEEEEEE-ETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEE-EECSCCCCCTTCBHHH
T ss_pred EEeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEE-EECCCCccCCCCcHHH
Confidence 456677765 357899999999999999999987542 112333 6666532 123333
Q ss_pred h----------------hhhccCccchHhhcccchHHHHHHHHHHHH-hCCCCc-------EEEEeCCCCCCChHHHH
Q 001187 1072 R----------------IFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNS-------LVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1072 ~----------------i~trig~~d~i~~g~StF~~em~e~~~il~-~at~~s-------LvllDElGRGTst~DG~ 1125 (1129)
. ++.++|..+.+....++++..+++...|.+ -+..+. |+||||+..|-++.--.
T Consensus 93 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~ 170 (249)
T 2qi9_C 93 YLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 170 (249)
T ss_dssp HHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHH
T ss_pred HHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHH
Confidence 3 333444443333334556555555333332 345666 99999999998876433
No 15
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.28 E-value=7.8e-07 Score=97.92 Aligned_cols=110 Identities=14% Similarity=0.163 Sum_probs=69.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H---------------------HhHcCCe
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I---------------------LAQVGAD 1059 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i---------------------lAQiG~~ 1059 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. + -.++| |
T Consensus 20 ~vl~~vsl~i-~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~ 97 (262)
T 1b0u_A 20 EVLKGVSLQA-RAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT-M 97 (262)
T ss_dssp EEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE-E
T ss_pred EEEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceE-E
Confidence 4667778776 457899999999999999999987542 0 11344 6
Q ss_pred ecCCCc---ccchhhhh----------------------hhccCccch-HhhcccchHHHHHHHHHHH-HhCCCCcEEEE
Q 001187 1060 VPAEIF---EISPVDRI----------------------FVRMGAKDH-IMAGQSTFLTELSETALML-SSATRNSLVVL 1112 (1129)
Q Consensus 1060 VPA~~a---~l~~~d~i----------------------~trig~~d~-i~~g~StF~~em~e~~~il-~~at~~sLvll 1112 (1129)
||.... .+++.+.| +.++|..+. .....++++..+++...|. .-+.++.++||
T Consensus 98 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 177 (262)
T 1b0u_A 98 VFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLF 177 (262)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666532 22333332 333444333 3333455655555543333 34788999999
Q ss_pred eCCCCCCChHHHH
Q 001187 1113 DELGRGTSTSDGQ 1125 (1129)
Q Consensus 1113 DElGRGTst~DG~ 1125 (1129)
||+..|-++.--.
T Consensus 178 DEPts~LD~~~~~ 190 (262)
T 1b0u_A 178 DEPTSALDPELVG 190 (262)
T ss_dssp ESTTTTSCHHHHH
T ss_pred eCCCccCCHHHHH
Confidence 9999998876443
No 16
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.27 E-value=5.6e-07 Score=102.92 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=68.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------------HHhHcCCeecCCCcc---cchhhh
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------------ILAQVGADVPAEIFE---ISPVDR 1072 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------------ilAQiG~~VPA~~a~---l~~~d~ 1072 (1129)
+-+|++|.. ..+.+++|.||||+|||||||+|+.+. .-.++| |||...+- +++.+.
T Consensus 15 ~l~~vsl~i-~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKV-ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA-FVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEE-CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCE-EECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEE-cCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEE-EEecCcccCCCCCHHHH
Confidence 667788876 457899999999999999999998553 011233 56665432 233333
Q ss_pred h------------------hhccCccchHhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1073 I------------------FVRMGAKDHIMAGQSTFLTELSET-ALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1073 i------------------~trig~~d~i~~g~StF~~em~e~-~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
| +.++|..+-...-.++++..+++. +.+..-+.++.++||||+-.|-+..-
T Consensus 93 l~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~ 162 (348)
T 3d31_A 93 LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162 (348)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 2 223333322222334555555554 44444588999999999999987653
No 17
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.27 E-value=6.8e-07 Score=102.43 Aligned_cols=110 Identities=21% Similarity=0.160 Sum_probs=67.4
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------H----------------hHcCCeecCCCc---c
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------L----------------AQVGADVPAEIF---E 1066 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------l----------------AQiG~~VPA~~a---~ 1066 (1129)
..+-+|++|.. ..+.+++|.||||+|||||||+|+.+.- + .++| |||.+.+ .
T Consensus 17 ~~~L~~vsl~i-~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig-~vfQ~~~l~p~ 94 (359)
T 3fvq_A 17 TPVLNDISLSL-DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG-YLVQEGVLFPH 94 (359)
T ss_dssp EEEEEEEEEEE-CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE-EECTTCCCCTT
T ss_pred EEEEEeeEEEE-cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE-EEeCCCcCCCC
Confidence 35677888876 4578999999999999999999985530 0 1122 4444432 2
Q ss_pred cchhhhhh---------------------hccCccchHhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1067 ISPVDRIF---------------------VRMGAKDHIMAGQSTFLTELSET-ALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1067 l~~~d~i~---------------------trig~~d~i~~g~StF~~em~e~-~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
+++.+.|. .++|..+....-.++++..+++. +.+..-+.++.++||||+-.|-++.--
T Consensus 95 ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r 174 (359)
T 3fvq_A 95 LTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174 (359)
T ss_dssp SCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 23333332 22222222222234555555543 333345889999999999999887543
No 18
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.26 E-value=7.5e-07 Score=98.09 Aligned_cols=109 Identities=20% Similarity=0.249 Sum_probs=69.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H----------HhHcCCeecCCCc---cc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I----------LAQVGADVPAEIF---EI 1067 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i----------lAQiG~~VPA~~a---~l 1067 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. + -.++| |||.... .+
T Consensus 38 ~vL~~vsl~i-~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~-~v~Q~~~l~~~~ 115 (263)
T 2olj_A 38 EVLKGINVHI-REGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG-MVFQRFNLFPHM 115 (263)
T ss_dssp EEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE-EECSSCCCCTTS
T ss_pred EEEEeeEEEE-cCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE-EEeCCCcCCCCC
Confidence 4677888876 467899999999999999999987543 1 12344 6776532 22
Q ss_pred chhhhh----------------------hhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1068 SPVDRI----------------------FVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1068 ~~~d~i----------------------~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~DG 1124 (1129)
++.+.| +.++|..+....-.++++..+++...| ..-+.++.++||||+..|-++.--
T Consensus 116 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~ 195 (263)
T 2olj_A 116 TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195 (263)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHH
Confidence 333433 222232222222234555555554333 345789999999999999887543
No 19
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.25 E-value=1.2e-06 Score=95.54 Aligned_cols=110 Identities=19% Similarity=0.204 Sum_probs=69.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCcc--cchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIFE--ISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a~--l~~~ 1070 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. +-.++| |||.+..- .++.
T Consensus 23 ~vl~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~-~v~Q~~~l~~~tv~ 100 (247)
T 2ff7_A 23 VILDNINLSI-KQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG-VVLQDNVLLNRSII 100 (247)
T ss_dssp EEEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE-EECSSCCCTTSBHH
T ss_pred ceeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE-EEeCCCccccccHH
Confidence 4667788876 457899999999999999999987553 112344 67765321 2344
Q ss_pred hhhhh---------------ccCccchHhh-----------cccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DRIFV---------------RMGAKDHIMA-----------GQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~i~t---------------rig~~d~i~~-----------g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~D 1123 (1129)
+.|.. ++|..+-+.. ..++++..+++...|. .-+.++.++||||+-.|-++..
T Consensus 101 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~ 180 (247)
T 2ff7_A 101 DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180 (247)
T ss_dssp HHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 44421 1222211111 1245655555544443 3578999999999999988764
Q ss_pred HH
Q 001187 1124 GQ 1125 (1129)
Q Consensus 1124 G~ 1125 (1129)
-.
T Consensus 181 ~~ 182 (247)
T 2ff7_A 181 EH 182 (247)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 20
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.24 E-value=1e-06 Score=97.55 Aligned_cols=110 Identities=23% Similarity=0.189 Sum_probs=68.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCc--ccchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIF--EISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a--~l~~~ 1070 (1129)
.|-+|++|.. ..+.+++|+||||+|||||||.++.+. +-.++| |||.... ..++.
T Consensus 33 ~vl~~vsl~i-~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~-~v~Q~~~l~~~tv~ 110 (271)
T 2ixe_A 33 QVLQGLTFTL-YPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVA-AVGQEPLLFGRSFR 110 (271)
T ss_dssp CCEEEEEEEE-CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEE-EECSSCCCCSSBHH
T ss_pred eeeEeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEE-EEecCCccccccHH
Confidence 5677888876 467899999999999999999987553 122454 6776532 12444
Q ss_pred hhhhhcc----------------CccchH-----------hhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChH
Q 001187 1071 DRIFVRM----------------GAKDHI-----------MAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1071 d~i~tri----------------g~~d~i-----------~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~ 1122 (1129)
+.|..-. +..+-+ ....++++..+++ ++.+..-+.++.|+||||+..|-++.
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~ 190 (271)
T 2ixe_A 111 ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190 (271)
T ss_dssp HHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred HHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 4442110 111101 1112455555544 44444458899999999999998876
Q ss_pred HHH
Q 001187 1123 DGQ 1125 (1129)
Q Consensus 1123 DG~ 1125 (1129)
--.
T Consensus 191 ~~~ 193 (271)
T 2ixe_A 191 NQL 193 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 21
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.23 E-value=8.7e-07 Score=101.70 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=67.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------------------HhHcCCeecCCCcc---cchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIFE---ISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------------------lAQiG~~VPA~~a~---l~~~d 1071 (1129)
.+-+|++|.. ..+.+++|.||||+|||||||.|+.+.- -.++| |||...+- +++.+
T Consensus 17 ~vl~~vsl~i-~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~e 94 (359)
T 2yyz_A 17 KAVDGVSFEV-KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVG-MVFQNYALYPHMTVFE 94 (359)
T ss_dssp EEEEEEEEEE-CTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEE-EECSSCCCCTTSCHHH
T ss_pred EEEeeeEEEE-cCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEE-EEecCcccCCCCCHHH
Confidence 4567788876 4578999999999999999999986530 01233 45554322 23333
Q ss_pred hh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1072 RI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 ~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.| +.++|..+....-.++++..+++ ++.+..-+.++.++||||+-.|-++.-
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 168 (359)
T 2yyz_A 95 NIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL 168 (359)
T ss_dssp HHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 33 22233332222233455555555 334444588999999999999987653
No 22
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.20 E-value=6.6e-07 Score=98.54 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=70.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH------------------hHcCCeecCCCc-ccchhh---
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL------------------AQVGADVPAEIF-EISPVD--- 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil------------------AQiG~~VPA~~a-~l~~~d--- 1071 (1129)
.+-+|++|.. . +.+++|+||||+|||||||.++.+. - .++|+|||.... .+++.+
T Consensus 19 ~il~~vsl~i-~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~ 95 (263)
T 2pjz_A 19 FSLENINLEV-N-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVY 95 (263)
T ss_dssp EEEEEEEEEE-C-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHH
T ss_pred eeEEeeeEEE-C-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHH
Confidence 4566777776 4 6799999999999999999998653 1 023336665421 222222
Q ss_pred --------------hhhhccCcc-chHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1072 --------------RIFVRMGAK-DHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1072 --------------~i~trig~~-d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
.++.++|.. +.+....++++..+++...| ..-+.++.++||||+..|-++.--.
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~ 165 (263)
T 2pjz_A 96 LYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRH 165 (263)
T ss_dssp HHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHH
T ss_pred HhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHH
Confidence 234445555 44444455666666554333 3346889999999999998876443
No 23
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.19 E-value=1.5e-06 Score=95.32 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=67.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH----------------------HHhHcCCeecCCCc---ccc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV----------------------ILAQVGADVPAEIF---EIS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v----------------------ilAQiG~~VPA~~a---~l~ 1068 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. +-.++| |||.+.. .++
T Consensus 21 ~vl~~vsl~i-~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~t 98 (257)
T 1g6h_A 21 KALDGVSISV-NKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV-RTFQTPQPLKEMT 98 (257)
T ss_dssp EEEEEECCEE-ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE-ECCCCCGGGGGSB
T ss_pred eeEeeeEEEE-eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE-EEccCCccCCCCc
Confidence 4677788876 457899999999999999999987543 011233 6666532 223
Q ss_pred hhhhhh----------------------------------hccCccchHhhcccchHHHHHHHHHHH-HhCCCCcEEEEe
Q 001187 1069 PVDRIF----------------------------------VRMGAKDHIMAGQSTFLTELSETALML-SSATRNSLVVLD 1113 (1129)
Q Consensus 1069 ~~d~i~----------------------------------trig~~d~i~~g~StF~~em~e~~~il-~~at~~sLvllD 1113 (1129)
+.+.|. .++|..+......++++..+++...|. .-+.++.++|||
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD 178 (257)
T 1g6h_A 99 VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178 (257)
T ss_dssp HHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 333332 222222222222345555555543333 346889999999
Q ss_pred CCCCCCChHHH
Q 001187 1114 ELGRGTSTSDG 1124 (1129)
Q Consensus 1114 ElGRGTst~DG 1124 (1129)
|+..|-++..-
T Consensus 179 EPts~LD~~~~ 189 (257)
T 1g6h_A 179 EPIAGVAPGLA 189 (257)
T ss_dssp STTTTCCHHHH
T ss_pred CCccCCCHHHH
Confidence 99999987643
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.19 E-value=6.6e-07 Score=99.40 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=66.1
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H----------HhHcCCeecCCCc-----
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I----------LAQVGADVPAEIF----- 1065 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i----------lAQiG~~VPA~~a----- 1065 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. + -.++| |||....
T Consensus 35 ~vL~~isl~i-~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~-~v~Q~~~~~~~~ 112 (279)
T 2ihy_A 35 TILKKISWQI-AKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG-FVSHSLLEKFQE 112 (279)
T ss_dssp EEEEEEEEEE-ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEE-EECHHHHTTSCT
T ss_pred EEEEeeeEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEE-EEEcCcccccCC
Confidence 4677888876 457899999999999999999987542 0 11232 4544311
Q ss_pred ccchhhhh-------------------------hhccCccchHhhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCC
Q 001187 1066 EISPVDRI-------------------------FVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1066 ~l~~~d~i-------------------------~trig~~d~i~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGT 1119 (1129)
.+++.+.| +.++|..+.+....++++..+++...| ..-+.++.|+||||+..|-
T Consensus 113 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~L 192 (279)
T 2ihy_A 113 GERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGL 192 (279)
T ss_dssp TSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTC
T ss_pred CCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccc
Confidence 11333333 222333222222334555555543333 3346889999999999998
Q ss_pred ChHHH
Q 001187 1120 STSDG 1124 (1129)
Q Consensus 1120 st~DG 1124 (1129)
++..-
T Consensus 193 D~~~~ 197 (279)
T 2ihy_A 193 DFIAR 197 (279)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87543
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.18 E-value=1.6e-06 Score=94.75 Aligned_cols=110 Identities=17% Similarity=0.098 Sum_probs=64.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH--H--------------------HHhHcC-CeecCCCcc---c
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA--V--------------------ILAQVG-ADVPAEIFE---I 1067 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~--v--------------------ilAQiG-~~VPA~~a~---l 1067 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+ . -.++.+ .|||..... +
T Consensus 17 ~vl~~vsl~i-~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (250)
T 2d2e_A 17 TILKGVNLVV-PKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGV 95 (250)
T ss_dssp EEEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred EEEeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence 4667777776 45789999999999999999999875 1 112333 356655321 2
Q ss_pred chhhhh------------------------hhccCcc-chHhhcccc-hHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q 001187 1068 SPVDRI------------------------FVRMGAK-DHIMAGQST-FLTELSETALMLS-SATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1068 ~~~d~i------------------------~trig~~-d~i~~g~St-F~~em~e~~~il~-~at~~sLvllDElGRGTs 1120 (1129)
++.+.+ +.++|.. +......++ ++..+++...|.+ -+.++.|+||||+..|-+
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD 175 (250)
T 2d2e_A 96 TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175 (250)
T ss_dssp BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTC
T ss_pred CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 222222 2223331 212222345 6666665444433 367889999999999988
Q ss_pred hHHH
Q 001187 1121 TSDG 1124 (1129)
Q Consensus 1121 t~DG 1124 (1129)
+.--
T Consensus 176 ~~~~ 179 (250)
T 2d2e_A 176 IDAL 179 (250)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 26
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.17 E-value=9.4e-07 Score=96.04 Aligned_cols=105 Identities=17% Similarity=0.230 Sum_probs=65.4
Q ss_pred ccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------------------HhHcCCeecCCCc---ccchhhh-
Q 001187 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------------------LAQVGADVPAEIF---EISPVDR- 1072 (1129)
Q Consensus 1016 pNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------------------lAQiG~~VPA~~a---~l~~~d~- 1072 (1129)
-+|++|.. .. .+++|+||||+|||||||.++.+.- -.++| |||.... .+++.+.
T Consensus 15 l~~isl~i-~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~-~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 15 RLNVDFEM-GR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIG-FVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEEE-CS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCB-CCCSSCCCCTTSCHHHHH
T ss_pred EeeeEEEE-CC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEE-EEcCCCccCCCCcHHHHH
Confidence 56777776 45 7999999999999999999985530 01122 5555421 1222232
Q ss_pred ------------------hhhccCccchHhhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChHH
Q 001187 1073 ------------------IFVRMGAKDHIMAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1073 ------------------i~trig~~d~i~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~D 1123 (1129)
++.++|..+....-.++++..+++...|. .-+.++.++||||+..|-++.-
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~ 161 (240)
T 2onk_A 92 AYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161 (240)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 23333433322223345655555544433 3578999999999999988754
No 27
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.17 E-value=1.4e-06 Score=94.64 Aligned_cols=110 Identities=19% Similarity=0.210 Sum_probs=67.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH-------------H-------Hh--HcCCeecCCCc---ccc
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV-------------I-------LA--QVGADVPAEIF---EIS 1068 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v-------------i-------lA--QiG~~VPA~~a---~l~ 1068 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. + .+ ++| |||.... .++
T Consensus 20 ~vl~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~l~~~lt 97 (240)
T 1ji0_A 20 HAIKGIDLKV-PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA-LVPEGRRIFPELT 97 (240)
T ss_dssp EEEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE-EECSSCCCCTTSB
T ss_pred eEEeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE-EEecCCccCCCCc
Confidence 4667777776 457899999999999999999997653 0 11 133 6776532 234
Q ss_pred hhhhhhh--------------------cc-CccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1069 PVDRIFV--------------------RM-GAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1069 ~~d~i~t--------------------ri-g~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
+.+.+.. ++ |..+.+....++++..+++ ++.+..-+.++.++||||+..|-++.--.
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~ 176 (240)
T 1ji0_A 98 VYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176 (240)
T ss_dssp HHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 4444321 11 1111111222345445544 33334458899999999999999876443
No 28
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.16 E-value=2.6e-06 Score=97.63 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=65.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------H------------hHcCCeecCCCcc---cchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------L------------AQVGADVPAEIFE---ISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------l------------AQiG~~VPA~~a~---l~~~d 1071 (1129)
.+-+|++|.. ..+.+++|.||||+|||||||+|+.+.- + .++| |||...+- +++.+
T Consensus 29 ~vl~~vsl~i-~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~e 106 (355)
T 1z47_A 29 RSVRGVSFQI-REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG-LVFQNYALFQHMTVYD 106 (355)
T ss_dssp TCEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE-EECGGGCCCTTSCHHH
T ss_pred EEEeeeEEEE-CCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE-EEecCcccCCCCCHHH
Confidence 4667788776 4578999999999999999999985430 0 0122 44443321 22233
Q ss_pred hh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1072 RI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 ~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.| +.++|..+....-.++++..+++ ++.+..-+.++.++||||+-.|-+..-
T Consensus 107 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 180 (355)
T 1z47_A 107 NVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQI 180 (355)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 22 22233332222223455555544 444444588999999999999988653
No 29
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.15 E-value=1.5e-06 Score=93.79 Aligned_cols=110 Identities=14% Similarity=0.077 Sum_probs=65.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------HHhHcCCeecCCCcc--cchhhhhhh--------
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------ILAQVGADVPAEIFE--ISPVDRIFV-------- 1075 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------ilAQiG~~VPA~~a~--l~~~d~i~t-------- 1075 (1129)
.+-+|+++.. ..+.+++|+||||+|||||||.++.+. +-.++| |||.+..- .++.+.|..
T Consensus 22 ~il~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~ 99 (229)
T 2pze_A 22 PVLKDINFKI-ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS-FCSQFSWIMPGTIKENIIFGVSYDEYR 99 (229)
T ss_dssp CSEEEEEEEE-ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEE-EECSSCCCCSBCHHHHHHTTSCCCHHH
T ss_pred eeeeeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEE-EEecCCcccCCCHHHHhhccCCcChHH
Confidence 4667788876 457899999999999999999998442 001222 56654321 133333321
Q ss_pred ------ccCccchHhh-----------cccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1076 ------RMGAKDHIMA-----------GQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1076 ------rig~~d~i~~-----------g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
..+..+.+.. ..++++..+++...|. .-+.++.++||||+..|-++..-.
T Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~ 167 (229)
T 2pze_A 100 YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167 (229)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHH
T ss_pred HHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHH
Confidence 1122111110 1145655555533333 346889999999999998876543
No 30
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.13 E-value=2.2e-06 Score=94.58 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=69.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH------------------HHhHcCCeecCCC----cccchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------------------ILAQVGADVPAEI----FEISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v------------------ilAQiG~~VPA~~----a~l~~~d 1071 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. +-.++| |||... ..+++.+
T Consensus 21 ~vl~~vsl~i-~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~-~v~q~~~~~~~~~tv~e 98 (266)
T 2yz2_A 21 KALENVSLVI-NEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG-IAFQYPEDQFFAERVFD 98 (266)
T ss_dssp EEEEEEEEEE-CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE-EECSSGGGGCCCSSHHH
T ss_pred ceeeeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE-EEeccchhhcCCCcHHH
Confidence 3566777766 457899999999999999999987553 112343 677652 1223333
Q ss_pred hh--------------------hhccCcc--chHhhcccchHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1072 RI--------------------FVRMGAK--DHIMAGQSTFLTELSETAL-MLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1072 ~i--------------------~trig~~--d~i~~g~StF~~em~e~~~-il~~at~~sLvllDElGRGTst~DG 1124 (1129)
.| +.++|.. +.+..-.++++..+++... +..-+.++.++||||+..|-++.--
T Consensus 99 nl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~ 174 (266)
T 2yz2_A 99 EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174 (266)
T ss_dssp HHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHH
Confidence 33 3333443 3233333456555555433 3445889999999999999887543
No 31
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.11 E-value=3.1e-06 Score=93.40 Aligned_cols=112 Identities=18% Similarity=0.138 Sum_probs=68.5
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH----------------------HHhHcC-CeecCCCccc--
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV----------------------ILAQVG-ADVPAEIFEI-- 1067 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v----------------------ilAQiG-~~VPA~~a~l-- 1067 (1129)
..+-+|++|.. ..+.+++|+||||+|||||||.++.+. ..++.+ .|||....-+
T Consensus 33 ~~vl~~vsl~i-~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~ 111 (267)
T 2zu0_C 33 KAILRGLSLDV-HPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111 (267)
T ss_dssp EEEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred EEEEEeeEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence 35677888876 457899999999999999999998751 112323 3676653211
Q ss_pred -chh----------------------------hhhhhccCccchH-hhccc-chHHHHHHHHHHH-HhCCCCcEEEEeCC
Q 001187 1068 -SPV----------------------------DRIFVRMGAKDHI-MAGQS-TFLTELSETALML-SSATRNSLVVLDEL 1115 (1129)
Q Consensus 1068 -~~~----------------------------d~i~trig~~d~i-~~g~S-tF~~em~e~~~il-~~at~~sLvllDEl 1115 (1129)
++. +.++.++|..+.+ ....+ +++..+++...|. .-+.++.|+||||+
T Consensus 112 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEP 191 (267)
T 2zu0_C 112 VSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 191 (267)
T ss_dssp CBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred ccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 111 1233334443222 12222 3655555543333 34678899999999
Q ss_pred CCCCChHHHH
Q 001187 1116 GRGTSTSDGQ 1125 (1129)
Q Consensus 1116 GRGTst~DG~ 1125 (1129)
..|-++..-.
T Consensus 192 ts~LD~~~~~ 201 (267)
T 2zu0_C 192 DSGLDIDALK 201 (267)
T ss_dssp TTTCCHHHHH
T ss_pred CCCCCHHHHH
Confidence 9998876543
No 32
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.10 E-value=1.5e-06 Score=90.05 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=47.7
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHhHcCCeec-----CCCcccch-------hhhhhhccCccc--hHhhcccchHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVP-----AEIFEISP-------VDRIFVRMGAKD--HIMAGQSTFLTEL 1094 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VP-----A~~a~l~~-------~d~i~trig~~d--~i~~g~StF~~em 1094 (1129)
.++|+||||+||||+||.++-..-.--.|.... .....+++ .+.++.+++... .+....+++...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 578999999999999999986652111222210 00011111 122333332211 1222234566666
Q ss_pred HHHHHHHH------hCCCCcEEEEeCCC
Q 001187 1095 SETALMLS------SATRNSLVVLDELG 1116 (1129)
Q Consensus 1095 ~e~~~il~------~at~~sLvllDElG 1116 (1129)
++...+++ .+..+.++||||+|
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEig 109 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIG 109 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCS
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCC
Confidence 65544444 26788999999976
No 33
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.10 E-value=1e-06 Score=101.52 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=30.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|++|.. ..+.+++|.||||+|||||||+|+.+
T Consensus 25 ~vl~~vsl~i-~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 25 TAVNKLNLTI-KDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEeeeEEEE-CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 4667888876 45789999999999999999999854
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.10 E-value=3.9e-06 Score=90.91 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=65.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------HHhHcCCeecCCCc--ccchhhhhhh--------
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------ILAQVGADVPAEIF--EISPVDRIFV-------- 1075 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------ilAQiG~~VPA~~a--~l~~~d~i~t-------- 1075 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. +-.++| |||.+.. .+++.+.|..
T Consensus 19 ~vl~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~-~v~Q~~~~~~~tv~enl~~~~~~~~~~ 96 (237)
T 2cbz_A 19 PTLNGITFSI-PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVA-YVPQQAWIQNDSLRENILFGCQLEEPY 96 (237)
T ss_dssp CSEEEEEEEE-CTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEE-EECSSCCCCSEEHHHHHHTTSCCCTTH
T ss_pred ceeeeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEE-EEcCCCcCCCcCHHHHhhCccccCHHH
Confidence 4667777776 457899999999999999999998442 001122 5665431 2233333321
Q ss_pred ------ccCccchH-----------hhcccchHHHHHHHHHH-HHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1076 ------RMGAKDHI-----------MAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1076 ------rig~~d~i-----------~~g~StF~~em~e~~~i-l~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
.++..+.+ ....++++..+++...| ..-+.++.++||||+..|-++..-.
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~ 164 (237)
T 2cbz_A 97 YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164 (237)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHH
T ss_pred HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHH
Confidence 11111101 11224555555553333 3346788999999999999876543
No 35
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.09 E-value=3.9e-06 Score=96.79 Aligned_cols=109 Identities=19% Similarity=0.182 Sum_probs=67.1
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------H------------hHcCCeecCCCcc---cchh
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------L------------AQVGADVPAEIFE---ISPV 1070 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------l------------AQiG~~VPA~~a~---l~~~ 1070 (1129)
..+-+|++|.. ..+.+++|.||||+|||||||+|+.+.- + ..+| ||+.+.+- +++.
T Consensus 16 ~~~L~~vsl~i-~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig-~VfQ~~~l~p~ltV~ 93 (381)
T 3rlf_A 16 VVVSKDINLDI-HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVG-MVFQSYALYPHLSVA 93 (381)
T ss_dssp EEEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEE-EECTTCCCCTTSCHH
T ss_pred EEEEeeeEEEE-CCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEE-EEecCCcCCCCCCHH
Confidence 34667888876 4578999999999999999999985430 0 0122 45444322 2333
Q ss_pred hhh---------------------hhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHH
Q 001187 1071 DRI---------------------FVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1071 d~i---------------------~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~D 1123 (1129)
+.| +.++|..+.+..-.+.++..+++...|.+ -+.++.++||||+-.|-+..-
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~ 168 (381)
T 3rlf_A 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168 (381)
T ss_dssp HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHH
Confidence 332 23333333333334455555555433333 367889999999999988754
No 36
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.09 E-value=3.5e-06 Score=96.78 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=65.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH-------H------------hHcCCeecCCCcc---cchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI-------L------------AQVGADVPAEIFE---ISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi-------l------------AQiG~~VPA~~a~---l~~~d 1071 (1129)
.+-+|++|.. ..+.+++|.||||+|||||||+|+.+.- + .++| |||...+- +++.+
T Consensus 17 ~vl~~vsl~i-~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~e 94 (362)
T 2it1_A 17 TALNNINLKI-KDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG-LVFQNWALYPHMTVYK 94 (362)
T ss_dssp EEEEEEEEEE-CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEE-EECTTCCCCTTSCHHH
T ss_pred EEEEeeEEEE-CCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEE-EEecCcccCCCCCHHH
Confidence 3567788776 4578999999999999999999985530 0 1222 45554322 23333
Q ss_pred hh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1072 RI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1072 ~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
.| +.++|..+....-.++++..+++ ++.+..-+.++.++||||+-.|-+..-
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 168 (362)
T 2it1_A 95 NIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALL 168 (362)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 33 22223222222223455555544 333344588999999999998887653
No 37
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.07 E-value=3.6e-06 Score=96.47 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=65.0
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH--------------------H----hHcCCeecCCCcc---c
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI--------------------L----AQVGADVPAEIFE---I 1067 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi--------------------l----AQiG~~VPA~~a~---l 1067 (1129)
+-+|++|.. ..+.+++|.||||+|||||||.|+.+.- + .++| |||...+- +
T Consensus 20 vl~~vsl~i-~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig-~v~Q~~~l~~~l 97 (353)
T 1oxx_K 20 ALDNVNINI-ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIG-MVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEEE-CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEE-EEETTSCCCTTS
T ss_pred eEeceEEEE-CCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEE-EEeCCCccCCCC
Confidence 566777776 4578999999999999999999985530 0 0122 45554321 2
Q ss_pred chhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChH
Q 001187 1068 SPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1068 ~~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~ 1122 (1129)
++.+.| +.++|..+....-.++++..+++ ++.+..-+.++.++||||+-.|-+..
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~ 174 (353)
T 1oxx_K 98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174 (353)
T ss_dssp CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGG
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 333333 22223222222223455555554 44444458899999999999998765
No 38
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.03 E-value=2.8e-06 Score=94.89 Aligned_cols=109 Identities=14% Similarity=0.098 Sum_probs=65.2
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------HHhHcCCeecCCCcc--cchhhhhh----------
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------ILAQVGADVPAEIFE--ISPVDRIF---------- 1074 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------ilAQiG~~VPA~~a~--l~~~d~i~---------- 1074 (1129)
+-+|++|.. ..+.+++|+||||+|||||||.++.+. +-.++| |||....- .++.+.|.
T Consensus 53 vl~~isl~i-~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 130 (290)
T 2bbs_A 53 VLKDINFKI-ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS-FCSQNSWIMPGTIKENIIGVSYDEYRYR 130 (290)
T ss_dssp SEEEEEEEE-CTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEE-EECSSCCCCSSBHHHHHHTTCCCHHHHH
T ss_pred EEEeeEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEE-EEeCCCccCcccHHHHhhCcccchHHHH
Confidence 556677765 457899999999999999999997442 111222 56665321 24444443
Q ss_pred ---hccCccchHhh-----------cccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1075 ---VRMGAKDHIMA-----------GQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1075 ---trig~~d~i~~-----------g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
...+..+.+.. ..++++..+++...|. .-+.++.|+||||+..|-++.--.
T Consensus 131 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (290)
T 2bbs_A 131 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 196 (290)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHH
Confidence 11111111110 0145655555543333 346889999999999998876543
No 39
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.01 E-value=6.6e-06 Score=94.94 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=64.4
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHH---------------------H----hHcCCeecCCCcc--
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI---------------------L----AQVGADVPAEIFE-- 1066 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vi---------------------l----AQiG~~VPA~~a~-- 1066 (1129)
.+-+|++|.. ..+.+++|.||||+|||||||+|+.+.- + .++| |||...+-
T Consensus 17 ~vl~~vsl~i-~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig-~v~Q~~~l~~ 94 (372)
T 1g29_1 17 TAVREMSLEV-KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIA-MVFQSYALYP 94 (372)
T ss_dssp EEEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEE-EECSCCCCCT
T ss_pred EEEeeeEEEE-cCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEE-EEeCCCccCC
Confidence 4567777776 4578999999999999999999985530 0 0122 45544322
Q ss_pred -cchhhhh---------------------hhccCccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHH
Q 001187 1067 -ISPVDRI---------------------FVRMGAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1067 -l~~~d~i---------------------~trig~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~D 1123 (1129)
+++.+.| +.++|..+....-.++++..+++ ++.+..-+.++.++||||+-.|-+..-
T Consensus 95 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 174 (372)
T 1g29_1 95 HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174 (372)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 2333332 12222222222223445444444 333333478899999999999987653
No 40
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.99 E-value=3.7e-06 Score=91.40 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=29.8
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+
T Consensus 16 ~vl~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 16 QILRDISFEA-QPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp CSEEEEEEEE-CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred ceEEEeEEEE-cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4566777766 45789999999999999999999855
No 41
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.98 E-value=5.9e-06 Score=90.80 Aligned_cols=110 Identities=16% Similarity=0.097 Sum_probs=66.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------HHhHcCCeecCCCcc--cchhh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIFE--ISPVD 1071 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------ilAQiG~~VPA~~a~--l~~~d 1071 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+. +-.++| |||.+..- .++.+
T Consensus 34 ~vl~~vsl~i-~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~-~v~Q~~~l~~~tv~e 111 (260)
T 2ghi_A 34 RTLKSINFFI-PSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIG-IVPQDTILFNETIKY 111 (260)
T ss_dssp CSEEEEEEEE-CTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEE-EECSSCCCCSEEHHH
T ss_pred ceeEeeEEEE-CCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEE-EEcCCCcccccCHHH
Confidence 4667788876 457899999999999999999997542 111233 56665321 23334
Q ss_pred hhhh---------------ccCccchHh-----------hcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1072 RIFV---------------RMGAKDHIM-----------AGQSTFLTELSET-ALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1072 ~i~t---------------rig~~d~i~-----------~g~StF~~em~e~-~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
.|.. .+|..+.+. ...++++..+++. +.+..-+.++.++||||+..|-++..-
T Consensus 112 nl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~ 191 (260)
T 2ghi_A 112 NILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191 (260)
T ss_dssp HHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHH
T ss_pred HHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 3321 112111110 0123555555543 333334678899999999999987654
Q ss_pred H
Q 001187 1125 Q 1125 (1129)
Q Consensus 1125 ~ 1125 (1129)
.
T Consensus 192 ~ 192 (260)
T 2ghi_A 192 Y 192 (260)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.92 E-value=1.7e-05 Score=95.83 Aligned_cols=113 Identities=10% Similarity=0.063 Sum_probs=67.2
Q ss_pred ccccccccc---CCCCCCceEEEEecCCCchhHHHHHHHHHH------H------------H-------------hH-cC
Q 001187 1013 EFVPNDITI---GGHGNASFILLTGPNMGGKSTLLRQVCLAV------I------------L-------------AQ-VG 1057 (1129)
Q Consensus 1013 ~fvpNdi~l---~~~~~~~~~iitGpN~~GKSt~lr~i~l~v------i------------l-------------AQ-iG 1057 (1129)
.|-||.+.+ .....+.+++|.||||+|||||||.++.+. + + ++ .+
T Consensus 8 ~~~~~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 87 (538)
T 3ozx_A 8 RYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELK 87 (538)
T ss_dssp ESSTTSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCC
T ss_pred ecCCCceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccc
Confidence 355666654 122357899999999999999999998431 0 0 00 00
Q ss_pred C-eecCCCcc------------------cchhhhhhhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q 001187 1058 A-DVPAEIFE------------------ISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGR 1117 (1129)
Q Consensus 1058 ~-~VPA~~a~------------------l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGR 1117 (1129)
. .++..-.. -...+.++.++|..+......++++..+++...|.+ -+..+.++||||+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts 167 (538)
T 3ozx_A 88 IVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSS 167 (538)
T ss_dssp EEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred hhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 0 00000000 011234555666655555556667666666444444 367889999999999
Q ss_pred CCChHHHH
Q 001187 1118 GTSTSDGQ 1125 (1129)
Q Consensus 1118 GTst~DG~ 1125 (1129)
|-+...-.
T Consensus 168 ~LD~~~~~ 175 (538)
T 3ozx_A 168 YLDVRERM 175 (538)
T ss_dssp TCCHHHHH
T ss_pred cCCHHHHH
Confidence 99876543
No 43
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.91 E-value=4.3e-06 Score=97.03 Aligned_cols=123 Identities=18% Similarity=0.195 Sum_probs=72.2
Q ss_pred cEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH--------------------H
Q 001187 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------I 1052 (1129)
Q Consensus 993 ~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v--------------------i 1052 (1129)
.|.+++...-+- ..+..+-+|++|.. ..+.+++|.||||+|||||||+|+.+. +
T Consensus 19 ~i~~~~l~~~y~-----~~~~~~L~~vsl~i-~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 19 QMTVKDLTAKYT-----EGGNAILENISFSI-SPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp CEEEEEEEEESS-----SSSCCSEEEEEEEE-CTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHH
T ss_pred eEEEEEEEEEec-----CCCeEEeeceeEEE-cCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHH
Confidence 467766543221 01245778888876 467899999999999999999998542 1
Q ss_pred HhHcCCeecCCCccc--chhhhh--------------hhccCccchHhhcccc-----------hHHHHHH-HHHHHHhC
Q 001187 1053 LAQVGADVPAEIFEI--SPVDRI--------------FVRMGAKDHIMAGQST-----------FLTELSE-TALMLSSA 1104 (1129)
Q Consensus 1053 lAQiG~~VPA~~a~l--~~~d~i--------------~trig~~d~i~~g~St-----------F~~em~e-~~~il~~a 1104 (1129)
-.++| |||...+-+ ++.+.| ...+|..+-+..-... ++..+++ ++.+..-+
T Consensus 93 rr~ig-~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 93 RKAFG-VIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp HHTEE-EESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred hCCEE-EEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 12333 677664332 233333 2223332222111122 4444444 33333346
Q ss_pred CCCcEEEEeCCCCCCChH
Q 001187 1105 TRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1105 t~~sLvllDElGRGTst~ 1122 (1129)
.++.++||||.-.|-++.
T Consensus 172 ~~P~lLLLDEPts~LD~~ 189 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPV 189 (390)
T ss_dssp TTCCEEEEESHHHHSCHH
T ss_pred cCCCEEEEeCCccCCCHH
Confidence 889999999988777654
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.90 E-value=1.7e-05 Score=96.14 Aligned_cols=107 Identities=11% Similarity=0.093 Sum_probs=64.4
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH------H-------HhH-----------------cCC-eecCC
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------I-------LAQ-----------------VGA-DVPAE 1063 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v------i-------lAQ-----------------iG~-~VPA~ 1063 (1129)
+-+|++ .. ..+.+++|+||||+|||||||.++.+. + ++. .+. +++..
T Consensus 37 ~l~~vs-~i-~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~ 114 (538)
T 1yqt_A 37 VLYRLP-VV-KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY 114 (538)
T ss_dssp EEECCC-CC-CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSC
T ss_pred cccCcC-cC-CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhh
Confidence 445555 33 346899999999999999999998432 0 000 010 22221
Q ss_pred Cccc------------------chhhhhhhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHH
Q 001187 1064 IFEI------------------SPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1064 ~a~l------------------~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~D 1123 (1129)
...+ ..++.++.++|..+......++++..+++...|.+ -+.++.|+||||+..|-++..
T Consensus 115 ~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~ 193 (538)
T 1yqt_A 115 VDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193 (538)
T ss_dssp GGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred hhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 1000 11234555666655444455666666665444443 367889999999999988764
No 45
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.84 E-value=7e-06 Score=92.24 Aligned_cols=112 Identities=24% Similarity=0.291 Sum_probs=67.2
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCcc--cch
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIFE--ISP 1069 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a~--l~~ 1069 (1129)
..+-+|++|.. ..+.+++|+||||+|||||||.++-+. +-.+|| |||.+..- .++
T Consensus 67 ~~vL~~isl~i-~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~-~v~Q~~~lf~~Tv 144 (306)
T 3nh6_A 67 RETLQDVSFTV-MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG-VVPQDTVLFNDTI 144 (306)
T ss_dssp CEEEEEEEEEE-CTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE-EECSSCCCCSEEH
T ss_pred CceeeeeeEEE-cCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE-EEecCCccCcccH
Confidence 35778888876 467899999999999999999987432 122343 56665321 233
Q ss_pred hhhhhh---------------ccCccchHhh---c--------ccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChH
Q 001187 1070 VDRIFV---------------RMGAKDHIMA---G--------QSTFLTELSETALML-SSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1070 ~d~i~t---------------rig~~d~i~~---g--------~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~ 1122 (1129)
.+.|.. ..+..+.+.. | -..++..+++...|. .-+.++.++||||.-.|-++.
T Consensus 145 ~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~ 224 (306)
T 3nh6_A 145 ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224 (306)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHH
T ss_pred HHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 344321 1111111110 1 134545554433333 335688999999999998876
Q ss_pred HHHh
Q 001187 1123 DGQA 1126 (1129)
Q Consensus 1123 DG~A 1126 (1129)
--..
T Consensus 225 ~~~~ 228 (306)
T 3nh6_A 225 NERA 228 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.83 E-value=3.2e-05 Score=94.87 Aligned_cols=110 Identities=10% Similarity=0.096 Sum_probs=66.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH------H-------HhH-----------------cC-CeecC
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV------I-------LAQ-----------------VG-ADVPA 1062 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v------i-------lAQ-----------------iG-~~VPA 1062 (1129)
++-+|++ .. ..+.+++|+||||+|||||||.++.+. + +.. ++ .++|.
T Consensus 106 ~~l~~vs-~i-~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q 183 (607)
T 3bk7_A 106 FVLYRLP-IV-KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183 (607)
T ss_dssp CEEECCC-CC-CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS
T ss_pred eeeCCCC-CC-CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeec
Confidence 4566665 33 357899999999999999999987432 0 000 01 02222
Q ss_pred CCcc------------------cchhhhhhhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHH
Q 001187 1063 EIFE------------------ISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1063 ~~a~------------------l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~D 1123 (1129)
.-.. ...++.++.++|..+......++++..+++...|.+ -+.++.++||||+..|-+...
T Consensus 184 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~ 263 (607)
T 3bk7_A 184 YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263 (607)
T ss_dssp CGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH
T ss_pred hhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 1000 012334555666655555555666666655444433 468899999999999998765
Q ss_pred HH
Q 001187 1124 GQ 1125 (1129)
Q Consensus 1124 G~ 1125 (1129)
-.
T Consensus 264 ~~ 265 (607)
T 3bk7_A 264 RL 265 (607)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 47
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.82 E-value=1.4e-05 Score=81.92 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.5
Q ss_pred CCceEEEEecCCCchhHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQ 1046 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~ 1046 (1129)
.+.+++|.||||+|||||+|+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 478999999999999999995
No 48
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.77 E-value=3.6e-05 Score=94.30 Aligned_cols=55 Identities=5% Similarity=-0.030 Sum_probs=36.7
Q ss_pred hhhhccCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHHHHh
Q 001187 1072 RIFVRMGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSDGQA 1126 (1129)
Q Consensus 1072 ~i~trig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~DG~A 1126 (1129)
.++.++|..+.+....++++..+++...|.+ -+..+.++||||+..|-++..-..
T Consensus 204 ~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~ 259 (608)
T 3j16_B 204 RYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLN 259 (608)
T ss_dssp HHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHH
T ss_pred HHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHH
Confidence 3455566555555555667666665444444 367889999999999998875443
No 49
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.71 E-value=3.4e-05 Score=98.34 Aligned_cols=110 Identities=20% Similarity=0.206 Sum_probs=67.5
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH-----hHcC-CeecCCC----cccchhhh----------
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL-----AQVG-ADVPAEI----FEISPVDR---------- 1072 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil-----AQiG-~~VPA~~----a~l~~~d~---------- 1072 (1129)
..+-+|++|.. ..+.+++|+||||+|||||||.++--.+- ..++ .|+|... ..+++.+.
T Consensus 448 ~~iL~~vsl~I-~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~ 526 (986)
T 2iw3_A 448 KILLNKTQLRL-KRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE 526 (986)
T ss_dssp EEEEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHH
T ss_pred EEeEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHH
Confidence 35677788776 45789999999999999999999731110 0000 2454321 12233333
Q ss_pred ----hhhccCcc-chHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHH
Q 001187 1073 ----IFVRMGAK-DHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSD 1123 (1129)
Q Consensus 1073 ----i~trig~~-d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~D 1123 (1129)
++.++|.. +....-.++++..+++...|.+ -+.++.|+||||+..|-+...
T Consensus 527 ~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~ 583 (986)
T 2iw3_A 527 AIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN 583 (986)
T ss_dssp HHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHH
T ss_pred HHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 34455553 3333344566666655444433 367889999999999988754
No 50
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.66 E-value=9.9e-06 Score=84.72 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=23.5
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcC
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG 1057 (1129)
.+++|+||||+||||+++.++-..- .-|
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~--~~G 29 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK--SSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH--HTT
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc--cCC
Confidence 4689999999999999999987654 445
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.65 E-value=6.2e-05 Score=91.00 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=62.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHH--------HHhHcCCeecCCCc---ccchh------------------hhhhhc
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAV--------ILAQVGADVPAEIF---EISPV------------------DRIFVR 1076 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~v--------ilAQiG~~VPA~~a---~l~~~------------------d~i~tr 1076 (1129)
.+.+++|+||||+|||||||.++.+. +..+-=.|+|.... ..++. +.++.+
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~ 372 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKR 372 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHH
Confidence 46799999999999999999998432 00000024444321 11222 223344
Q ss_pred cCccchHhhcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHHHHh
Q 001187 1077 MGAKDHIMAGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTSDGQA 1126 (1129)
Q Consensus 1077 ig~~d~i~~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~DG~A 1126 (1129)
+|..+....-.++++..+++-..|.+ -+.++.++||||+.+|-+..--..
T Consensus 373 ~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~ 423 (538)
T 3ozx_A 373 LNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYI 423 (538)
T ss_dssp TTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHH
T ss_pred cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 45444444445666666665444433 478899999999999998765433
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.60 E-value=6.6e-05 Score=91.93 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=63.5
Q ss_pred ccccccCCCC----CCceEEEEecCCCchhHHHHHHHHHHHHhHcC--------CeecCCCc---ccchhhhhhh-----
Q 001187 1016 PNDITIGGHG----NASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPAEIF---EISPVDRIFV----- 1075 (1129)
Q Consensus 1016 pNdi~l~~~~----~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG--------~~VPA~~a---~l~~~d~i~t----- 1075 (1129)
-+|++|.... .+.+++|+||||+|||||||.++.+.- ..-| .|+|.... ..++.+.++.
T Consensus 363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~ 441 (608)
T 3j16_B 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-PDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441 (608)
T ss_dssp CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-CSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSST
T ss_pred cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-CCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcc
Confidence 3455554421 136799999999999999999984321 0111 24444321 1223332222
Q ss_pred ------------ccCccchHhhcccchHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChHHHHhh
Q 001187 1076 ------------RMGAKDHIMAGQSTFLTELSET-ALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1129)
Q Consensus 1076 ------------rig~~d~i~~g~StF~~em~e~-~~il~~at~~sLvllDElGRGTst~DG~AI 1127 (1129)
++|..+......++++..+++- +.+..-+.++.++||||+.+|-+...-..|
T Consensus 442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i 506 (608)
T 3j16_B 442 FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIIC 506 (608)
T ss_dssp TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHH
T ss_pred cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHH
Confidence 2222222222335565555554 444445889999999999999987654433
No 53
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.54 E-value=0.00021 Score=87.45 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=68.6
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCcc--cch
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIFE--ISP 1069 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a~--l~~ 1069 (1129)
..+-+|+++.. ..+.+++|+||||+||||++|.++-+. +-.++| |||.+..- -++
T Consensus 356 ~~~l~~isl~i-~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~tv 433 (587)
T 3qf4_A 356 DPVLSGVNFSV-KPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS-AVPQETVLFSGTI 433 (587)
T ss_dssp CCSEEEEEEEE-CTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEE-EECSSCCCCSEEH
T ss_pred CcceeceEEEE-cCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheE-EECCCCcCcCccH
Confidence 35677888876 457899999999999999999987432 234454 67765421 233
Q ss_pred hhhhhh-c--------------cCccchH-----------hhcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChH
Q 001187 1070 VDRIFV-R--------------MGAKDHI-----------MAGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1070 ~d~i~t-r--------------ig~~d~i-----------~~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~ 1122 (1129)
.+.|.- + .+..+.+ .++-..++..+++...|. .-+.++.++||||.-.|-++.
T Consensus 434 ~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~ 513 (587)
T 3qf4_A 434 KENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513 (587)
T ss_dssp HHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHH
T ss_pred HHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 344321 0 1111111 111234555555533333 346788999999999998876
Q ss_pred HHHhh
Q 001187 1123 DGQAI 1127 (1129)
Q Consensus 1123 DG~AI 1127 (1129)
-...|
T Consensus 514 ~~~~i 518 (587)
T 3qf4_A 514 TEKRI 518 (587)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.54 E-value=0.00014 Score=87.91 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=60.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHH-------H-hHcCCeecCCCc---ccchh-----------------hhhhhcc
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVI-------L-AQVGADVPAEIF---EISPV-----------------DRIFVRM 1077 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vi-------l-AQiG~~VPA~~a---~l~~~-----------------d~i~tri 1077 (1129)
.+.+++|+||||+|||||||.++.+.- + .++| |||.+.. .+++. +.++.++
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~-~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA-YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL 389 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEE-EECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEE-EEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 467999999999999999999985421 0 1122 5666531 12222 2233344
Q ss_pred CccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 001187 1078 GAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDG 1124 (1129)
Q Consensus 1078 g~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG 1124 (1129)
|..+......++++..+++ ++.+..-+.++.|+||||+.+|-+..--
T Consensus 390 ~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~ 437 (538)
T 1yqt_A 390 GIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 437 (538)
T ss_dssp TCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 4443333334555555554 3333345789999999999999887643
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.52 E-value=0.00012 Score=89.69 Aligned_cols=99 Identities=18% Similarity=0.142 Sum_probs=60.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHH-------H-hHcCCeecCCCc---ccchhh-----------------hhhhcc
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVI-------L-AQVGADVPAEIF---EISPVD-----------------RIFVRM 1077 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vi-------l-AQiG~~VPA~~a---~l~~~d-----------------~i~tri 1077 (1129)
.+.+++|+||||+|||||||.++.+.- + .++ .|||.... .+++.+ .++.++
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i-~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~ 459 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTV-AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 459 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCE-EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEE-EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 467999999999999999999985420 1 112 25665431 122222 223333
Q ss_pred CccchHhhcccchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1078 GAKDHIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1078 g~~d~i~~g~StF~~em~e-~~~il~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
|..+......++++..+++ ++.+..-+.++.|+||||+-.|-+..--.
T Consensus 460 ~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~ 508 (607)
T 3bk7_A 460 GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 508 (607)
T ss_dssp TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHH
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHH
Confidence 4333333334455554444 44444457899999999999999876543
No 56
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.51 E-value=0.00012 Score=79.22 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=22.8
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..+-+|++|.. ..+.+++|+||||+||||++|.++-.
T Consensus 12 ~~~l~~isl~i-~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 12 DLGTENLYFQS-MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceeecceeccC-CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45677888876 45789999999999999999998754
No 57
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.49 E-value=0.00011 Score=89.86 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=67.8
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCcc--cch
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIFE--ISP 1069 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a~--l~~ 1069 (1129)
..+-+|+++.. ..+.+++|+||||+||||++|.++-+. +-.++| |||.+..- .++
T Consensus 356 ~~~l~~i~l~i-~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~Q~~~l~~~tv 433 (582)
T 3b5x_A 356 KPALSHVSFSI-PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA-LVSQNVHLFNDTI 433 (582)
T ss_pred ccccccceEEE-CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeE-EEcCCCccccccH
Confidence 35677888876 467899999999999999999987542 112333 66665321 133
Q ss_pred hhhhh----------------hccCccchHhh-----------cccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCCh
Q 001187 1070 VDRIF----------------VRMGAKDHIMA-----------GQSTFLTELSETALML-SSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1070 ~d~i~----------------trig~~d~i~~-----------g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst 1121 (1129)
.+.|. .+.|..+.+.. +.++++..+++...|. .-+.++.++||||.-.|-++
T Consensus 434 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~ 513 (582)
T 3b5x_A 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT 513 (582)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 33331 11222221111 1245555555533333 34678999999999999887
Q ss_pred HHHHh
Q 001187 1122 SDGQA 1126 (1129)
Q Consensus 1122 ~DG~A 1126 (1129)
..-..
T Consensus 514 ~~~~~ 518 (582)
T 3b5x_A 514 ESERA 518 (582)
T ss_pred HHHHH
Confidence 65443
No 58
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.48 E-value=2.4e-05 Score=80.36 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=22.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
++.++|+||||+||||+++.++-..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999988654
No 59
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.48 E-value=0.00015 Score=77.76 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=24.0
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
..+.+++|+||||+|||||+++++...+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999985444
No 60
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.45 E-value=0.00017 Score=88.49 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=68.4
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCc--ccch
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIF--EISP 1069 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a--~l~~ 1069 (1129)
..+-+|+++.. ..+.+++|+||||+||||++|.++-+. +-.++| |||.+.. ..++
T Consensus 368 ~~~l~~isl~i-~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~tv 445 (598)
T 3qf4_B 368 KPVLKDITFHI-KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG-IVLQDTILFSTTV 445 (598)
T ss_dssp SCSCCSEEEEC-CTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE-EECTTCCCCSSBH
T ss_pred CccccceEEEE-cCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE-EEeCCCccccccH
Confidence 35778888877 467899999999999999999987432 223444 5666532 1233
Q ss_pred hhhhhh---------------ccCccchHhh---c--------ccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChH
Q 001187 1070 VDRIFV---------------RMGAKDHIMA---G--------QSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1070 ~d~i~t---------------rig~~d~i~~---g--------~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~ 1122 (1129)
.+.|.- ..+..+.+.. | ...++..+++...|.+ -..++.++||||.-.|-++.
T Consensus 446 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~ 525 (598)
T 3qf4_B 446 KENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK 525 (598)
T ss_dssp HHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 333321 1111111111 1 1345555555333333 35788999999999998876
Q ss_pred HHHhh
Q 001187 1123 DGQAI 1127 (1129)
Q Consensus 1123 DG~AI 1127 (1129)
-...|
T Consensus 526 ~~~~i 530 (598)
T 3qf4_B 526 TEKSI 530 (598)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 61
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.43 E-value=0.00016 Score=60.26 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=40.3
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhc
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLD 148 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~ 148 (1129)
-||-.|.-.||+|+.||++.|++++.....+.|.|-||..|.|.
T Consensus 11 ~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e~L~ 54 (66)
T 2l8d_A 11 ADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTELALK 54 (66)
T ss_dssp CSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEEeec
Confidence 48899999999999999999999999999999999888887654
No 62
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.42 E-value=0.00019 Score=87.78 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=66.1
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCcc--cch
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIFE--ISP 1069 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a~--l~~ 1069 (1129)
..+-+|+++.. ..+.+++|+||||+||||++|.++-+. +-.++| |||.+..- -++
T Consensus 354 ~~~l~~isl~i-~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~l~~~tv 431 (578)
T 4a82_A 354 APILKDINLSI-EKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG-LVQQDNILFSDTV 431 (578)
T ss_dssp CCSEEEEEEEE-CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE-EECSSCCCCSSBH
T ss_pred CcceeeeEEEE-CCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheE-EEeCCCccCcccH
Confidence 35778888876 467899999999999999999987432 122343 66665321 234
Q ss_pred hhhhhh---------------ccCccchHh-----------hcccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChH
Q 001187 1070 VDRIFV---------------RMGAKDHIM-----------AGQSTFLTELSETALML-SSATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1070 ~d~i~t---------------rig~~d~i~-----------~g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst~ 1122 (1129)
.+.|.- ..+..+.+. ++-+.++..+++...|. .-+.++.++||||.-.|-++.
T Consensus 432 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~ 511 (578)
T 4a82_A 432 KENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511 (578)
T ss_dssp HHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 444321 111111111 11134555555433333 235788999999999998876
Q ss_pred HH
Q 001187 1123 DG 1124 (1129)
Q Consensus 1123 DG 1124 (1129)
--
T Consensus 512 ~~ 513 (578)
T 4a82_A 512 SE 513 (578)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 63
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.41 E-value=0.00019 Score=59.85 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=43.5
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhccCcceEEEE
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWV 157 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l~~e~~~~~ 157 (1129)
-||-.|.-.||+|+.||+++|++++.....+.|.|-||.+|.| ...+|+-+
T Consensus 14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e~L--~~kDIKp~ 64 (68)
T 2dig_A 14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELEL--KENDIKSG 64 (68)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEEE--ETTTEECC
T ss_pred ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEEEe--chhccccC
Confidence 4899999999999999999999999999999999988888765 35555533
No 64
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.34 E-value=0.00011 Score=89.84 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=67.6
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCc--ccch
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIF--EISP 1069 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a--~l~~ 1069 (1129)
..+-+|+++.. ..+.+++|+||||+||||++|.++-+. +-.++| |||.+.. ..++
T Consensus 356 ~~~l~~v~~~i-~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~Q~~~l~~~tv 433 (582)
T 3b60_A 356 VPALRNINLKI-PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA-LVSQNVHLFNDTV 433 (582)
T ss_dssp CCSEEEEEEEE-CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE-EECSSCCCCSSBH
T ss_pred CccccceeEEE-cCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCe-EEccCCcCCCCCH
Confidence 34667788876 457899999999999999999987542 122343 6776532 1233
Q ss_pred hhhhh----------------hccCccchHhh-----------cccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCCh
Q 001187 1070 VDRIF----------------VRMGAKDHIMA-----------GQSTFLTELSETALML-SSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1070 ~d~i~----------------trig~~d~i~~-----------g~StF~~em~e~~~il-~~at~~sLvllDElGRGTst 1121 (1129)
.|.|. .+.|..+.+.. +.++++..+++...|. .-+.++.++||||+-.|-++
T Consensus 434 ~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~ 513 (582)
T 3b60_A 434 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513 (582)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCH
Confidence 34332 11222222211 1244555555433333 33578899999999999887
Q ss_pred HHHH
Q 001187 1122 SDGQ 1125 (1129)
Q Consensus 1122 ~DG~ 1125 (1129)
..-.
T Consensus 514 ~~~~ 517 (582)
T 3b60_A 514 ESER 517 (582)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 65
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.34 E-value=0.00023 Score=88.50 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=23.5
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLL 1044 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~l 1044 (1129)
+-+|++|.. ..+.+++|+||||+||||||
T Consensus 33 ~L~~vsl~i-~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 33 NLKNIDVEI-PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TCCSEEEEE-ETTSEEEEECSTTSSHHHHH
T ss_pred ceeccEEEE-CCCCEEEEECCCCCCHHHHh
Confidence 345666665 45789999999999999997
No 66
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.34 E-value=0.00014 Score=89.32 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=66.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCc--ccchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIF--EISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a--~l~~~ 1070 (1129)
.+-+|+++.. ..+.+++|+||||+||||++|.++-+. +-.++| |||.+.. ..++.
T Consensus 358 ~vl~~isl~i-~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~-~v~Q~~~l~~~tv~ 435 (595)
T 2yl4_A 358 PIFQDFSLSI-PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG-TVSQEPILFSCSIA 435 (595)
T ss_dssp EEEEEEEEEE-CTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE-EECSSCCCCSSBHH
T ss_pred ccccceEEEE-cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE-EEccCCcccCCCHH
Confidence 5778888876 467899999999999999999987442 122343 6666532 12333
Q ss_pred hhhh------------------hccCccchHhh---c--------ccchHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCC
Q 001187 1071 DRIF------------------VRMGAKDHIMA---G--------QSTFLTELSETALML-SSATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1071 d~i~------------------trig~~d~i~~---g--------~StF~~em~e~~~il-~~at~~sLvllDElGRGTs 1120 (1129)
+.|. .+.|..+.+.. | -++++..+++...|. .-+.++.++||||.-.|-+
T Consensus 436 eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD 515 (595)
T 2yl4_A 436 ENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 515 (595)
T ss_dssp HHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCC
T ss_pred HHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCC
Confidence 3332 11222111110 1 145555555533333 3357889999999999988
Q ss_pred hHHH
Q 001187 1121 TSDG 1124 (1129)
Q Consensus 1121 t~DG 1124 (1129)
+..-
T Consensus 516 ~~~~ 519 (595)
T 2yl4_A 516 AENE 519 (595)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 67
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.29 E-value=0.00012 Score=77.65 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=23.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
.+.+++|+||||+|||||+++++....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 468999999999999999999986543
No 68
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.27 E-value=0.00025 Score=78.84 Aligned_cols=37 Identities=35% Similarity=0.364 Sum_probs=29.4
Q ss_pred ccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHH
Q 001187 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1129)
Q Consensus 1016 pNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil 1053 (1129)
-+++.++. ..+.+++|+||||+|||||+++++..+..
T Consensus 25 Ld~i~~~l-~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 25 INDKTLGA-RGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp HHHHHCSB-CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45555554 45789999999999999999999976543
No 69
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.26 E-value=0.00026 Score=70.95 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
++.++|+||||+||||+++.++-...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999986543
No 70
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.21 E-value=0.00045 Score=85.96 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=32.1
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..+.+.+.+.+. -+|++|.. ..+.+++|+||||+||||||+.+.
T Consensus 326 ~~~~~~~~~~~~------------L~~vsl~I-~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 326 RWLEVVGAREHN------------LKNVSVKI-PLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp CEEEEEEECSTT------------CCSEEEEE-ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cceeecCccccc------------cccceeEe-cCCCEEEEEeeCCCCHHHHHHHHH
Confidence 356666555443 34666665 457899999999999999998764
No 71
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.20 E-value=0.0002 Score=91.39 Aligned_cols=36 Identities=33% Similarity=0.310 Sum_probs=29.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|++|.. ..+.+++|+||||+|||||||.++.+
T Consensus 687 ~iL~dVSl~I-~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 687 PQITDINFQC-SLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp CSEEEEEEEE-ETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred eeeeccEEEE-cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567777776 35789999999999999999999743
No 72
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.19 E-value=0.00028 Score=77.85 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+++|+||||+|||||+++++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999743
No 73
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.18 E-value=0.00069 Score=71.16 Aligned_cols=95 Identities=20% Similarity=0.214 Sum_probs=51.1
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCC-cccchhhhhhhccCcc-chHhh-----cccchHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEISPVDRIFVRMGAK-DHIMA-----GQSTFLTELSET 1097 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~-a~l~~~d~i~trig~~-d~i~~-----g~StF~~em~e~ 1097 (1129)
..+.+++|+||||+||||++++++. --..--.|+..+. .....+.++...+|.. +.+.. ..+++......+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 3567999999999999999999987 1111113555543 1111222333333331 11111 112222111222
Q ss_pred HHHHHhCC-CCcEEEEeCCCCCCCh
Q 001187 1098 ALMLSSAT-RNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1098 ~~il~~at-~~sLvllDElGRGTst 1121 (1129)
+.+...+. ...+|||||+..+.+.
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 32222333 4889999999998765
No 74
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.16 E-value=0.00078 Score=85.75 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=32.5
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.|.+++.+... -+|+++.. ..+.+++|||+||+|||||++.+.
T Consensus 646 ~~L~v~~l~~~~------------Lk~Vsl~I-~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGAREHN------------LRGIDVSF-PLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECSTT------------CCSEEEEE-ESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcccc------------ccCceEEE-CCCCEEEEEcCCCCCHHHHHHHHH
Confidence 467777765432 24455554 357899999999999999999974
No 75
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.15 E-value=0.00054 Score=72.39 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
.+.+++|+||||+|||||+++++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999996554
No 76
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.10 E-value=0.00021 Score=78.46 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+++|+||||+||||+|+.++-..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 46799999999999999999988543
No 77
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.05 E-value=0.00077 Score=85.51 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=32.4
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.|.+++.+... -+|+++.. ..+.+++|||+||+|||||++.+.
T Consensus 628 ~~L~v~~l~~~~------------Lk~Vsl~I-~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGAREHN------------LKNVSVKI-PLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECSSS------------CCSEEEEE-ESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcccc------------cccceEEE-cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 467787765432 23455554 357899999999999999999964
No 78
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.04 E-value=0.00059 Score=58.35 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=39.9
Q ss_pred cccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhcc
Q 001187 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDL 149 (1129)
Q Consensus 103 ~~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l 149 (1129)
.--||-+|...| .|..||+|+|++.+.. +.+.|.|+||..|.|..
T Consensus 6 ~~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~ 50 (67)
T 3p8d_A 6 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKH 50 (67)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEG
T ss_pred ccccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceEEEeH
Confidence 445899999999 9999999999999998 67999999999887653
No 79
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.04 E-value=0.00028 Score=74.31 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=23.0
Q ss_pred CcccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1012 ~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
..+++|+-.+. .+.+++|.||||+||||++|.++-+.
T Consensus 8 ~~~~~~~~~i~---~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 8 TKPTARGQPAA---VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcCCCCCCCC---CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 36888885553 46899999999999999999998553
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.03 E-value=0.00099 Score=74.99 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=22.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+++|.||||+|||||+|.++.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 46799999999999999999988654
No 81
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.00 E-value=0.00036 Score=74.50 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=51.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhH------cC-CeecCCCc-ccchhhhhhhccCcc-chHhhcc----cchHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQ------VG-ADVPAEIF-EISPVDRIFVRMGAK-DHIMAGQ----STFLT 1092 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQ------iG-~~VPA~~a-~l~~~d~i~trig~~-d~i~~g~----StF~~ 1092 (1129)
.+.+++|+||||+||||++++++..+++.. -| .|+-.+.. ....+..+..++|.. +.+..+. ..-..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 467999999999999999999997655432 12 34443321 111122344455543 1111111 11112
Q ss_pred HH----HHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 001187 1093 EL----SETALMLSSATRNSLVVLDELGRGTST 1121 (1129)
Q Consensus 1093 em----~e~~~il~~at~~sLvllDElGRGTst 1121 (1129)
++ .++...+.. ....+|+|||+..+...
T Consensus 103 ~~~~~~~~~~~~~~~-~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 103 HQTQLLYQASAMMVE-SRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHH-SCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHhc-CCceEEEEeCchHHHHH
Confidence 22 223333332 46789999999987654
No 82
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.00 E-value=0.00024 Score=71.95 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=30.7
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+-+++++.. ..+.+++|.||||+|||||+|.++-+.
T Consensus 21 ~~l~~vsl~i-~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 21 FAEILLKLHT-EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHCC-SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHhcccccc-CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4566777765 457899999999999999999998665
No 83
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.97 E-value=0.0016 Score=82.93 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=31.7
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..+.+++.+++.+ +|+++.. ..+.+++|+||||+|||||++.+.
T Consensus 588 ~~l~v~~~~~~~L------------k~Vsl~I-~~Geiv~I~G~SGSGKSTLl~~~l 631 (916)
T 3pih_A 588 ASLKIKGVRHNNL------------KNIDVEI-PLGVFVCVTGVSGSGKSSLVMETL 631 (916)
T ss_dssp SEEEEEEECSTTC------------CSEEEEE-ESSSEEEEECSTTSSHHHHHHHTH
T ss_pred ceEEEeeeccccc------------cccceEE-cCCcEEEEEccCCCChhhhHHHHH
Confidence 3577877776544 2445544 346799999999999999986443
No 84
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.00022 Score=84.50 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=27.2
Q ss_pred ccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1018 di~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
++++.. ..+.+++|+||||+|||||||.++-+.
T Consensus 130 ~vsl~i-~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 130 KIRMSN-FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHHS-SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred cCceEe-CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 566655 357799999999999999999998664
No 85
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=96.95 E-value=0.00063 Score=63.86 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=39.6
Q ss_pred cCcccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhc
Q 001187 101 YGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLD 148 (1129)
Q Consensus 101 ~~~~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~ 148 (1129)
.+.+++|.||-..|.++..||.|+|+. +...++++|..|||++-.|.
T Consensus 2 ~~~~~~G~rV~AkWsdn~~yYpG~V~~-~~~~~ky~V~FdDg~~~~v~ 48 (123)
T 2g3r_A 2 HMNSFVGLRVVAKWSSNGYFYSGKITR-DVGAGKYKLLFDDGYECDVL 48 (123)
T ss_dssp ---CCTTCEEEEECTTTCCEEEEEEEE-EEETTEEEEEETTSCEEEEE
T ss_pred CCccccceEEEEEeccCCcCcccEEEE-eccCCeEEEEEcCCCeeEee
Confidence 367899999999999888999999999 58888999999999976553
No 86
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.91 E-value=0.00083 Score=58.92 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=42.1
Q ss_pred cccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhccCcceEEEE
Q 001187 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWV 157 (1129)
Q Consensus 103 ~~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l~~e~~~~~ 157 (1129)
..-||.+|...|. |+.||.|+|++.+.. +...|.|+||..|.|. ..+++-+
T Consensus 9 ~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dyn~e~v~--~~~lrpl 59 (74)
T 2equ_A 9 DFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDGVIRCLK--RMHIKAM 59 (74)
T ss_dssp CCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTSCEEEEC--GGGEECC
T ss_pred CCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecCCeEEec--HHHCeeC
Confidence 4558999999999 999999999999876 6899999999877664 3445544
No 87
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.85 E-value=0.0004 Score=79.59 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.0
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+.+++|+||||+||||+|+.++-.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999988643
No 88
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.84 E-value=0.00015 Score=82.46 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=27.2
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++++.. ..+.+++|+||||+||||+|+.++
T Consensus 160 ~l~~l~~~i-~~g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 160 AISAIKDGI-AIGKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp HHHHHHHHH-HHTCCEEEEESTTSCHHHHHHHGG
T ss_pred HHhhhhhhc-cCCCEEEEECCCCCCHHHHHHHHh
Confidence 566666654 346789999999999999999998
No 89
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.83 E-value=0.0011 Score=59.11 Aligned_cols=45 Identities=20% Similarity=0.390 Sum_probs=39.8
Q ss_pred CcccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhc
Q 001187 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLD 148 (1129)
Q Consensus 102 ~~~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~ 148 (1129)
..-.||-+|...| .|..||.|+|++.+.. +.+.|.|+||..|.|.
T Consensus 20 ~~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~etvk 64 (85)
T 3qii_A 20 SEFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVK 64 (85)
T ss_dssp -CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEE
T ss_pred cccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeEEec
Confidence 3556999999999 9999999999999988 5799999999988665
No 90
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.81 E-value=0.00093 Score=73.63 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.7
Q ss_pred eEEEEecCCCchhHHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.++|.||||+||||||++++.+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999765
No 91
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.75 E-value=0.00056 Score=72.78 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=23.0
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+|++|.. ..+.+++|+||||+||||++|.++-+.
T Consensus 14 ~~isl~i-~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSM-NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceec-CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4566655 357899999999999999999998643
No 92
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=96.69 E-value=0.0018 Score=54.35 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=40.9
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccC-CchhhhccC
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-gd~e~l~l~ 150 (1129)
-+|..|...|..|+.||.|+|++.++..+...|.|.| |..|.+.++
T Consensus 5 ~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~ 51 (59)
T 1mhn_A 5 KVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS 51 (59)
T ss_dssp CTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHH
Confidence 3799999999999999999999999888899999966 988877654
No 93
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.64 E-value=0.0033 Score=71.93 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=54.0
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHhHcC---CeecCCCcccchhhhhhhccCcc-chHhhcccchHHHHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALM 1100 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG---~~VPA~~a~l~~~d~i~trig~~-d~i~~g~StF~~em~e~~~i 1100 (1129)
..+++++|+||||+|||||+.+++..+.. .| .||-++...-.. ...|+|.. +++.--..+-..++.++...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~---ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV---YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH---HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH---HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 45789999999999999999999865432 33 366555322111 34455543 33222222223344444444
Q ss_pred HHhCCCCcEEEEeCCCCCC
Q 001187 1101 LSSATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1101 l~~at~~sLvllDElGRGT 1119 (1129)
+......++||+|.+..=.
T Consensus 134 l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp HHHTSCCSEEEEECTTTCC
T ss_pred HhhhcCCCeEEehHhhhhc
Confidence 4345667899999987544
No 94
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.59 E-value=0.00092 Score=69.52 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=21.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+.+++|+||||+||||++|.++-.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 579999999999999999998754
No 95
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.53 E-value=0.0015 Score=82.40 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=30.9
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHH
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQ 1046 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~ 1046 (1129)
+.|.+++.+.. +-+|+++.. ..+.+++|||+||+|||||++.
T Consensus 501 ~~L~v~~l~~~------------~L~~vsl~i-~~Geiv~I~G~nGSGKSTLl~~ 542 (842)
T 2vf7_A 501 GWLELNGVTRN------------NLDNLDVRF-PLGVMTSVTGVSGSGKSTLVSQ 542 (842)
T ss_dssp CEEEEEEEEET------------TEEEEEEEE-ESSSEEEEECCTTSSHHHHCCC
T ss_pred ceEEEEeeeec------------ccccceEEE-cCCCEEEEEcCCCcCHHHHHHH
Confidence 46777776532 234455554 3578999999999999999996
No 96
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.53 E-value=0.0042 Score=71.00 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=56.2
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHhH-cCCeecCCCcccchhhhhhhccCcc-chHhhcccchHHHHHHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALMLS 1102 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilAQ-iG~~VPA~~a~l~~~d~i~trig~~-d~i~~g~StF~~em~e~~~il~ 1102 (1129)
..+++++|.||||+|||||+.+++..+.... --.|+-.+... .. ....++|.. +++.--...-..++.+++..+.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~-~~--~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL-DP--EYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-CH--HHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc-CH--HHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 3578999999999999999999986654332 12466655321 11 123455532 2221111111334455555454
Q ss_pred hCCCCcEEEEeCCCCCCC
Q 001187 1103 SATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1103 ~at~~sLvllDElGRGTs 1120 (1129)
.....++||||++.....
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 455689999999998774
No 97
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.50 E-value=0.00073 Score=72.20 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=19.0
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHH-HH
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVC-LA 1050 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~-l~ 1050 (1129)
.+++|.. ..+.+++|+||||+||||++|.++ -.
T Consensus 18 ~~~sl~v-~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 18 GPGSMLK-SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ----CCE-ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCccc-CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3444443 346899999999999999999987 54
No 98
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.49 E-value=0.001 Score=68.61 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
++++|+||||+||||++|.++-.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999998743
No 99
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.48 E-value=0.0041 Score=73.78 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=25.9
Q ss_pred ccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1018 di~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+++|.. ..+.+++|.||||+||||+|+.++.+.
T Consensus 285 ~Isl~i-~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 285 PLNVEG-KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCCCS-CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Cceeec-cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 344443 346899999999999999999988553
No 100
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.49 E-value=0.00044 Score=61.38 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=38.8
Q ss_pred ccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhccC
Q 001187 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1129)
Q Consensus 104 ~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l~ 150 (1129)
.-+|.+|...|. |+.||.|+|++.+.. +.+.|.|+||..|.|.+.
T Consensus 7 ~kvGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E~V~~s 51 (81)
T 2ldm_A 7 FQINEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (81)
Confidence 348999999999 999999999999864 479999988998877654
No 101
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.48 E-value=0.00089 Score=75.87 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+++|.||||+||||+++.++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998653
No 102
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.47 E-value=0.0012 Score=69.81 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=22.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+.+++|+||||+|||||||.++.+
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999999999977
No 103
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.45 E-value=0.00084 Score=74.99 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=50.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcC---CeecCCCcccchhhhhhh---ccCccchHhhcccchHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETAL 1099 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG---~~VPA~~a~l~~~d~i~t---rig~~d~i~~g~StF~~em~e~~~ 1099 (1129)
.+++++|+||||+||||+++.+|..... .-| ++|.++..+....+.+-. ++|...... .+ ..+ +..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~--~~--~~~---l~~ 175 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC--YT--KEE---FQQ 175 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC--SS--HHH---HHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec--CC--HHH---HHH
Confidence 3579999999999999999998854322 257 456666544444433321 122111000 00 112 233
Q ss_pred HHHhCCCCcEEEEeCCCCCCC
Q 001187 1100 MLSSATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1100 il~~at~~sLvllDElGRGTs 1120 (1129)
.+..+...++||||..|+...
T Consensus 176 al~~~~~~dlvIiDT~G~~~~ 196 (296)
T 2px0_A 176 AKELFSEYDHVFVDTAGRNFK 196 (296)
T ss_dssp HHHHGGGSSEEEEECCCCCTT
T ss_pred HHHHhcCCCEEEEeCCCCChh
Confidence 344456789999997777643
No 104
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.42 E-value=0.0038 Score=70.00 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcC
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG 1057 (1129)
.+++++|+||||+||||+++.+|.. +++-|
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g 132 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEG 132 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcC
Confidence 4679999999999999999999854 34445
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.41 E-value=0.0027 Score=72.62 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.8
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
..++++.|+||||+|||||+++++..+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998654
No 106
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.31 E-value=0.0042 Score=53.00 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=41.6
Q ss_pred cccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEcc-CCchhhhccC
Q 001187 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYD-DGEDELLDLG 150 (1129)
Q Consensus 103 ~~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yd-dgd~e~l~l~ 150 (1129)
..-+|..|...|..|+.||.++|.+.+...+...|.|. =|..|.+.++
T Consensus 8 ~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~ 56 (64)
T 4a4f_A 8 SWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL 56 (64)
T ss_dssp CCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHH
Confidence 44589999999999999999999999998889999994 4888877654
No 107
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.31 E-value=0.028 Score=75.01 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=37.5
Q ss_pred cEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 993 ~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.|++++...-.-. ..+.++-+|++|.. ..+..++|+||+|+||||+++.+.
T Consensus 415 ~I~~~nvsF~Y~~----~~~~~vL~~isl~i-~~G~~vaivG~sGsGKSTll~ll~ 465 (1321)
T 4f4c_A 415 DITVENVHFTYPS----RPDVPILRGMNLRV-NAGQTVALVGSSGCGKSTIISLLL 465 (1321)
T ss_dssp CEEEEEEEECCSS----STTSCSEEEEEEEE-CTTCEEEEEECSSSCHHHHHHHHT
T ss_pred cEEEEEeeeeCCC----CCCCceeeceEEee-cCCcEEEEEecCCCcHHHHHHHhc
Confidence 4677665432111 12357888999987 467899999999999999999876
No 108
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=96.30 E-value=0.0048 Score=52.06 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=41.3
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhccC
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l~ 150 (1129)
-+|..|...| .|..||.|+|+..|...+...|+|.||..-|+...
T Consensus 15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~k 59 (66)
T 2eqj_A 15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWK 59 (66)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEee
Confidence 4899999999 89999999999999999999999999998877643
No 109
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.27 E-value=0.002 Score=66.26 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.2
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+.+++|+||||+||||++|.++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999987
No 110
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.27 E-value=0.0022 Score=65.55 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.1
Q ss_pred eEEEEecCCCchhHHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+.+|+||||+||||+|+.|+.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998654
No 111
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=96.24 E-value=0.0039 Score=61.12 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=40.7
Q ss_pred cccCcccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhc
Q 001187 99 KSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLD 148 (1129)
Q Consensus 99 ~~~~~~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~ 148 (1129)
+..|.++||.||-..|.++.-||.|+|+.+ ...+++.|..|||..-.|.
T Consensus 4 ~~~~~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k~v~ 52 (156)
T 1ssf_A 4 SSSGNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVL 52 (156)
T ss_dssp ----CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEEEEE
T ss_pred CCCCcchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCeeEee
Confidence 344678999999999999999999999996 7777899999999987664
No 112
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.24 E-value=0.0022 Score=68.42 Aligned_cols=25 Identities=20% Similarity=0.487 Sum_probs=22.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+++|+||||+|||||+|.++-.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4679999999999999999998743
No 113
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=96.21 E-value=0.0049 Score=50.64 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=38.2
Q ss_pred ccceEEEecCCCCceEeEEEEeeeCCCCeEEEEc-cCCchhhhccC
Q 001187 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1129)
Q Consensus 106 vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddgd~e~l~l~ 150 (1129)
+|..|...|..|+.||.|+|.+.+...+...|.| |=|..|.+.++
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~ 49 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 49 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGG
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHH
Confidence 7899999999999999999999998888899999 55998877654
No 114
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.19 E-value=0.0026 Score=66.64 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+++|+||||+||||++|.++-.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998854
No 115
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.19 E-value=0.0016 Score=79.85 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=21.3
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHhHcCCeecC
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA 1062 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA 1062 (1129)
.++|.||||+||||+|+.++ |.+.|.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~--------Gl~~P~ 72 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALS--------GVALPR 72 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHH--------SCC---
T ss_pred eEEEECCCCChHHHHHHHHh--------CCCCCC
Confidence 49999999999999999999 776673
No 116
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.16 E-value=0.0027 Score=66.73 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+++|+||||+|||||+|.++-+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988553
No 117
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.14 E-value=0.0058 Score=55.41 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=41.2
Q ss_pred cccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEc-cCCchhhhccC
Q 001187 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1129)
Q Consensus 103 ~~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddgd~e~l~l~ 150 (1129)
..-||..|...|..|+.||.|+|.+.+...+.+.|.| |=|..|.|.++
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~ 58 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS 58 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHH
Confidence 3458999999999999999999999999888999999 55888866544
No 118
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.14 E-value=0.002 Score=67.28 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=20.8
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+++++|+||||+||||++|.++-.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 568999999999999999998753
No 119
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.13 E-value=0.002 Score=72.20 Aligned_cols=47 Identities=17% Similarity=0.056 Sum_probs=34.6
Q ss_pred cccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCC
Q 001187 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1129)
Q Consensus 1015 vpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~ 1063 (1129)
+-+++.+.. ..+.+++|+||||+|||||++.++-+. =.+|=+|||..
T Consensus 115 vL~~vsl~i-~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~ 161 (305)
T 2v9p_A 115 ALKLWLKGI-PKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHK 161 (305)
T ss_dssp HHHHHHHTC-TTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTT
T ss_pred hhccceEEe-cCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCc
Confidence 456677776 467899999999999999999998765 11222356654
No 120
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.03 E-value=0.0029 Score=84.19 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=64.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHH---------------------HHhHcCCeecCCCc--ccchh
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIF--EISPV 1070 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v---------------------ilAQiG~~VPA~~a--~l~~~ 1070 (1129)
.+-+|++|.. ..+.+++|+||||+||||+++.++-.. +-.++| |||.+.. .-++.
T Consensus 404 ~vL~~isl~i-~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~-~v~Q~~~l~~~ti~ 481 (1284)
T 3g5u_A 404 QILKGLNLKV-KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIG-VVSQEPVLFATTIA 481 (1284)
T ss_dssp CSEEEEEEEE-CTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE-EECSSCCCCSSCHH
T ss_pred cceecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheE-EEcCCCccCCccHH
Confidence 5778888877 467899999999999999999986321 223444 5666531 11333
Q ss_pred hhhhh---------------ccCccchHh-----------hcccchHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChH
Q 001187 1071 DRIFV---------------RMGAKDHIM-----------AGQSTFLTELSETALMLS-SATRNSLVVLDELGRGTSTS 1122 (1129)
Q Consensus 1071 d~i~t---------------rig~~d~i~-----------~g~StF~~em~e~~~il~-~at~~sLvllDElGRGTst~ 1122 (1129)
+.|.- ..+..+.+. .+-++++...++...|.+ -..++.++||||.-.+-++.
T Consensus 482 eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~ 560 (1284)
T 3g5u_A 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560 (1284)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 33321 111111111 112345555555333333 34678999999998888765
No 121
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.99 E-value=0.0027 Score=65.30 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.7
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+++|+||||+||||++|.++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 579999999999999999996
No 122
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.94 E-value=0.0046 Score=64.40 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+++|+||||+||||++|.++-.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999743
No 123
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.93 E-value=0.0056 Score=81.48 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=30.2
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+|++|.. ..+.+++|+||||+||||+++.++-+
T Consensus 1047 ~~l~~vsl~i-~~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1047 PVLQGLSLEV-KKGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp CSBSSCCEEE-CSSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred eeecceeEEE-cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4667888876 46789999999999999999998743
No 124
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.93 E-value=0.0083 Score=66.87 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=24.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
+++++|+|+||+||||+++.+|.. +++.|.-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~ 128 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRR 128 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH--HHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCe
Confidence 578999999999999999999854 4555543
No 125
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.91 E-value=0.0036 Score=64.18 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.9
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+++++|+||||+||||+++.++-
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999999864
No 126
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.85 E-value=0.0075 Score=64.26 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vil 1053 (1129)
.+.+++|+||||+||||++.+++....-
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999988866543
No 127
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.84 E-value=0.0048 Score=71.74 Aligned_cols=94 Identities=23% Similarity=0.240 Sum_probs=50.8
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHhH-cC------CeecCCCc-ccchhhhhhhccCcc-chHhhc----ccchH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VG------ADVPAEIF-EISPVDRIFVRMGAK-DHIMAG----QSTFL 1091 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilAQ-iG------~~VPA~~a-~l~~~d~i~trig~~-d~i~~g----~StF~ 1091 (1129)
..+.+++|+||||+|||||++++++...+.. .| .|+-.+.. .-..+..+..++|.. +.+..+ .....
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 3467999999999999999999987655421 22 24433321 111122345556643 222211 11111
Q ss_pred HH----HHHHHHHHHhCCCCcEEEEeCCCCCC
Q 001187 1092 TE----LSETALMLSSATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1092 ~e----m~e~~~il~~at~~sLvllDElGRGT 1119 (1129)
.+ +.++..++. .....||||||+..--
T Consensus 256 ~~~~~~l~~~~~~l~-~~~~~llVIDs~t~~~ 286 (400)
T 3lda_A 256 DHQLRLLDAAAQMMS-ESRFSLIVVDSVMALY 286 (400)
T ss_dssp HHHHHHHHHHHHHHH-HSCEEEEEEETGGGGC
T ss_pred HHHHHHHHHHHHHHH-hcCCceEEecchhhhC
Confidence 11 122223333 2467899999986543
No 128
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.82 E-value=0.0079 Score=68.08 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..++|+||||+||||++|.++-.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999999999999854
No 129
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.69 E-value=0.0068 Score=67.80 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=23.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+++|.||||+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998654
No 130
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.63 E-value=0.022 Score=64.12 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=25.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcCC
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~ 1058 (1129)
.+++++|+||||+||||++..+|.. +++-|.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~--l~~~g~ 134 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY--YAELGY 134 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH--HHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCC
Confidence 4679999999999999999988854 455564
No 131
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.62 E-value=0.0063 Score=60.70 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.5
Q ss_pred ceEEEEecCCCchhHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+|+||||+||||+|..|+.+.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998644
No 132
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.62 E-value=0.0049 Score=62.16 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=20.0
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+++|+||||+||||++|.++-
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999873
No 133
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.61 E-value=0.005 Score=73.11 Aligned_cols=33 Identities=27% Similarity=0.188 Sum_probs=26.7
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+|++|.. .. .+++|+||||+||||+||.++.+.
T Consensus 21 ~~vsl~i-~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 21 FARTFDF-DE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEEEEC-CS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceEEEE-cc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 4566665 34 799999999999999999998543
No 134
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.59 E-value=0.0058 Score=63.39 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=21.0
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+.+++|+||||+||||+++.++-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999874
No 135
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.56 E-value=0.0061 Score=64.08 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.0
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+++++|+||||+||||+++.++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHH
Confidence 46799999999999999999886
No 136
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.53 E-value=0.0026 Score=74.01 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=26.4
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
++++|.. ..+ +++|+||||+||||+|+.|+++.
T Consensus 52 ~~v~l~~-~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 52 TQLELEL-GGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEEC-CSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred eeEEEec-CCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 4555655 345 99999999999999999998665
No 137
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.44 E-value=0.0077 Score=67.43 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=21.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+++|+||||+||||+++.++.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998754
No 138
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.43 E-value=0.0063 Score=69.93 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=22.0
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
.+.+|+||||+||||+|..|+.+..
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3889999999999999999997753
No 139
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.43 E-value=0.0033 Score=72.13 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=25.8
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+++++.. ..+.+++|+||||+||||+|+.++
T Consensus 166 ~~l~~~i-~~G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 166 SFLRRAV-QLERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp HHHHHHH-HTTCCEEEEESSSSCHHHHHHHHH
T ss_pred HHHHHHH-hcCCEEEEECCCCCCHHHHHHHHH
Confidence 5666654 346789999999999999999998
No 140
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.42 E-value=0.007 Score=62.98 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=21.7
Q ss_pred CcccccccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 1012 GEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1012 ~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..+.-+|++|.. ..+++++|+||+|+||||+.|.++-
T Consensus 11 ~~~~~~~~~~~~-~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 11 VDLGTENLYFQS-NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCceeEec-CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 357888888876 3567999999999999999999883
No 141
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.38 E-value=0.0075 Score=61.06 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+.+++|+||||+||||++|.++-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 568999999999999999998743
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.37 E-value=0.016 Score=65.97 Aligned_cols=86 Identities=16% Similarity=0.043 Sum_probs=48.3
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHhHc-C---CeecCCCcc--cchhhhhhhccCccchHhhcccchHHHHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAVILAQV-G---ADVPAEIFE--ISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS 1102 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~vilAQi-G---~~VPA~~a~--l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~ 1102 (1129)
.++|+||+|.||||+++.++-.. ..- + .++.|.... ..++..++..+|..-. ..+. ....-+..+...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~-~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-RRGL-SRDEFLALLVEHLR 121 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-SSCC-CHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-CCCC-CHHHHHHHHHHHHh
Confidence 79999999999999999887432 211 2 234443321 2334445554543210 0111 11111233444555
Q ss_pred hCCCCcEEEEeCCCCC
Q 001187 1103 SATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1103 ~at~~sLvllDElGRG 1118 (1129)
....+.+|+|||+..-
T Consensus 122 ~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HTTCCEEEEEETGGGS
T ss_pred hcCCeEEEEEECcccc
Confidence 5666789999998765
No 143
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.36 E-value=0.0071 Score=65.15 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.4
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+||||+||||++|.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999987
No 144
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.34 E-value=0.01 Score=67.85 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=23.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+++|.||||+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 46799999999999999999998654
No 145
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=95.28 E-value=0.059 Score=46.45 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=39.6
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhccC
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l~ 150 (1129)
-+|..|=+.|- |..||-|+|+..|....+..|.++||.+-|+...
T Consensus 28 ~eGeDVLarws-DGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~k 72 (79)
T 2m0o_A 28 WEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 72 (79)
T ss_dssp CTTCEEEBCCT-TSCCCEEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ccCCEEEEEec-CCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEee
Confidence 36788889996 8899999999999999999999999998887643
No 146
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=95.28 E-value=0.02 Score=50.69 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=41.6
Q ss_pred cccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEc-cCCchhhhccC
Q 001187 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1129)
Q Consensus 103 ~~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddgd~e~l~l~ 150 (1129)
..-+|..|...|..|+.||.|+|++.+...+...|.| |=|..|.+.++
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~ 65 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 65 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGG
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHH
Confidence 3458999999999999999999999998888899999 55988877644
No 147
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.25 E-value=0.0088 Score=62.25 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=23.0
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+++|+||||+||||++|.++-..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998554
No 148
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.24 E-value=0.0096 Score=61.76 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=20.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+.++|+||+|+||||+++.++-..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999887543
No 149
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.23 E-value=0.015 Score=66.06 Aligned_cols=89 Identities=12% Similarity=0.178 Sum_probs=48.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHc--CC---eecCCCcc--cchhhhhhhccCccchHhhcccchHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQV--GA---DVPAEIFE--ISPVDRIFVRMGAKDHIMAGQSTFLTELSETA 1098 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQi--G~---~VPA~~a~--l~~~d~i~trig~~d~i~~g~StF~~em~e~~ 1098 (1129)
.++.++|+||+|.||||+++.++-..- .+. |+ ++.|.... ..++..++..+|..-. ..+. +...-+..+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~-~~~~-~~~~~~~~l~ 120 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH-KKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP-FTGL-SIAELYRRLV 120 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH-HHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC-SSSC-CHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCC-CHHHHHHHHH
Confidence 356899999999999999999875432 111 22 33332111 1223344444433210 0111 1111234455
Q ss_pred HHHHhCCCCcEEEEeCCCC
Q 001187 1099 LMLSSATRNSLVVLDELGR 1117 (1129)
Q Consensus 1099 ~il~~at~~sLvllDElGR 1117 (1129)
..+.....+.+|+|||+..
T Consensus 121 ~~l~~~~~~~vlilDE~~~ 139 (386)
T 2qby_A 121 KAVRDYGSQVVIVLDEIDA 139 (386)
T ss_dssp HHHHTCCSCEEEEEETHHH
T ss_pred HHHhccCCeEEEEEcChhh
Confidence 5566555688999999865
No 150
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.22 E-value=0.012 Score=68.92 Aligned_cols=87 Identities=18% Similarity=0.291 Sum_probs=47.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCee---cCCCcccchhhhhh---hccCccchH-hhcccchHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV---PAEIFEISPVDRIF---VRMGAKDHI-MAGQSTFLTELSETAL 1099 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V---PA~~a~l~~~d~i~---trig~~d~i-~~g~StF~~em~e~~~ 1099 (1129)
+.+++|+||||+||||++..+|.. ++.-|.-| -|+-.+.+.++++- .++|..-.. ..+.. .+++ ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~--l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d--p~~i--~~~ 170 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYF--YKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN--PIEI--AKK 170 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC--HHHH--HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC--HHHH--HHH
Confidence 578999999999999999988854 45556433 33333333333222 122221000 00100 1111 112
Q ss_pred HHHhCC--CCcEEEEeCCCCCC
Q 001187 1100 MLSSAT--RNSLVVLDELGRGT 1119 (1129)
Q Consensus 1100 il~~at--~~sLvllDElGRGT 1119 (1129)
.+..+. ..++||+|+.||..
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHhcCCCEEEEECCCCcc
Confidence 344443 77999999999864
No 151
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.21 E-value=0.041 Score=55.26 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=20.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.++|+||.|.||||+++.++-.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988754
No 152
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.21 E-value=0.008 Score=72.43 Aligned_cols=39 Identities=23% Similarity=0.140 Sum_probs=30.1
Q ss_pred cccccccc-CCCCCCceEEEEecCCCchhHHHHHHHHHHHH
Q 001187 1014 FVPNDITI-GGHGNASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1129)
Q Consensus 1014 fvpNdi~l-~~~~~~~~~iitGpN~~GKSt~lr~i~l~vil 1053 (1129)
.+-+|+.+ +. ..+++++|+||||+|||||++++++.-++
T Consensus 26 ~~Ld~i~~G~i-~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 26 EGFDDISHGGL-PIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTHHHHTTSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hhHHHhcCCCC-CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45567777 43 46789999999999999999997544333
No 153
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.19 E-value=0.033 Score=67.08 Aligned_cols=88 Identities=13% Similarity=0.041 Sum_probs=48.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcCC---e-ecCCCcccchhhhhhhccCcc-chH-hhcc--------cchH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGA---D-VPAEIFEISPVDRIFVRMGAK-DHI-MAGQ--------STFL 1091 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~---~-VPA~~a~l~~~d~i~trig~~-d~i-~~g~--------StF~ 1091 (1129)
.+.+++|+||||+|||||+++++....- -|- | ++.+.. -.++.+. .++|.. +.+ ..|. ..+.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~--~G~~vi~~~~ee~~-~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACA--NKERAILFAYEESR-AQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEEESSSCH-HHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEEEeCCH-HHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 4679999999999999999999865432 252 3 343321 1222211 233322 111 1111 1122
Q ss_pred -HHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 001187 1092 -TELSETALMLSSATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1092 -~em~e~~~il~~at~~sLvllDElGRG 1118 (1129)
.+.++++.....+..+.+|||| .-.|
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilD-p~~~ 382 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAID-SLSA 382 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEE-CHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEc-ChHH
Confidence 3444444444457889999999 5444
No 154
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.17 E-value=0.012 Score=63.90 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.6
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+||||+||||++|.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999997
No 155
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=95.17 E-value=0.021 Score=50.56 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=41.4
Q ss_pred cccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEc-cCCchhhhccC
Q 001187 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1129)
Q Consensus 103 ~~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddgd~e~l~l~ 150 (1129)
..-+|..|...|..|+.||.++|++.+...+...|.| |=|..|.|.+.
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~ 57 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS 57 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHH
Confidence 3458999999999999999999999998788999999 44998877654
No 156
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.10 E-value=0.018 Score=61.44 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=48.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcCCee--cCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHh
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSS 1103 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V--PA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~ 1103 (1129)
.+.+++||||-|+||||++.+++.-..-+..=+.+ |+...+ + ...|.+|+|..-... ..... .++...+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~-~~~i~srlG~~~~~~-~~~~~----~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-S-IRNIQSRTGTSLPSV-EVESA----PEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-G-CSSCCCCCCCSSCCE-EESST----HHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-H-HHHHHHhcCCCcccc-ccCCH----HHHHHHHHH
Confidence 46799999999999999998887554433222222 454433 2 235777887531110 11111 223333332
Q ss_pred ---CCCCcEEEEeCCC
Q 001187 1104 ---ATRNSLVVLDELG 1116 (1129)
Q Consensus 1104 ---at~~sLvllDElG 1116 (1129)
....++|+|||+-
T Consensus 84 ~~~~~~~dvViIDEaQ 99 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQ 99 (223)
T ss_dssp TTSCTTCCEEEECSGG
T ss_pred HhhCCCCCEEEEecCc
Confidence 2347899999984
No 157
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.03 E-value=0.032 Score=65.92 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=25.9
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHh
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilA 1054 (1129)
..+.+++|+|++|+|||||+.+++..+...
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~ 230 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATK 230 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999876553
No 158
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.97 E-value=0.014 Score=61.36 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
.+.+|+||||+||||+|..|..+..
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999986654
No 159
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.97 E-value=0.028 Score=64.25 Aligned_cols=93 Identities=22% Similarity=0.196 Sum_probs=53.9
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHhH-cCCeecCCCcccchhhhhhhccCcc-chHhhcccchHHHHHHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALMLS 1102 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilAQ-iG~~VPA~~a~l~~~d~i~trig~~-d~i~~g~StF~~em~e~~~il~ 1102 (1129)
..+++++|+||+|+|||||..+++..+.... -.+|+-++... . .....++|.. +++.-....-..++.++...+.
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~-~--~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-D--PIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-C--HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc-c--HHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999886654332 22466665321 1 1123445432 2221111111234444444343
Q ss_pred hCCCCcEEEEeCCCCCCC
Q 001187 1103 SATRNSLVVLDELGRGTS 1120 (1129)
Q Consensus 1103 ~at~~sLvllDElGRGTs 1120 (1129)
......+||||.++.=..
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 345678999999987654
No 160
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.96 E-value=0.013 Score=68.56 Aligned_cols=24 Identities=42% Similarity=0.451 Sum_probs=21.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+.+++|+||||+||||+|+.++-
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999874
No 161
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.90 E-value=0.01 Score=66.74 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=20.1
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-.+++|||+||+||||+||.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHH
Confidence 3589999999999999999987
No 162
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.89 E-value=0.0085 Score=69.97 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=27.1
Q ss_pred ccccccCCCCCCce--EEEEecCCCchhHHHHHHHHH
Q 001187 1016 PNDITIGGHGNASF--ILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1016 pNdi~l~~~~~~~~--~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
-+++++.. ..+.+ ++|.||||+||||||+.++..
T Consensus 30 L~~vsl~i-~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSV-SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSC-C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEe-cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 45666665 35678 999999999999999999754
No 163
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.81 E-value=0.0055 Score=71.45 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.9
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+++|+||||+|||||||.++.
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 899999999999999999984
No 164
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.80 E-value=0.0098 Score=67.83 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=28.3
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+++ +.. ..+.+++|.||||+||||+|++|+-.
T Consensus 60 ~ald~l-l~i-~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 60 RAIDGL-LTC-GIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp HHHHHH-SCE-ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEee-eee-cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345566 665 45789999999999999999999855
No 165
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.78 E-value=0.013 Score=66.47 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=26.1
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+++.+.. ..+.+++|+||||+||||||+.++...
T Consensus 46 ~~i~~~~-~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 46 DAVLPQT-GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHGGGC-CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhCCccc-CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3444443 346799999999999999999988543
No 166
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.78 E-value=0.016 Score=64.85 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+++|+||||+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998553
No 167
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.77 E-value=0.01 Score=61.40 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=21.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
+.+++||||.|+||||+|-+++.-..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999977665443
No 168
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.76 E-value=0.029 Score=56.37 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.++|+||.|.||||+++.++-.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988744
No 169
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.69 E-value=0.024 Score=64.44 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=51.9
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHhH----cC---CeecCCCc-ccchhhhhhhccCccc-hHhhcc---cch-H
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ----VG---ADVPAEIF-EISPVDRIFVRMGAKD-HIMAGQ---STF-L 1091 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilAQ----iG---~~VPA~~a-~l~~~d~i~trig~~d-~i~~g~---StF-~ 1091 (1129)
..+.+++|+||+|+|||||+.+++..+.+.. .| +|+-.+.. .-..+-.+..++|..- .+..+. ..+ .
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCH
Confidence 3578999999999999999999987654421 12 36655542 1112223344555431 111111 000 1
Q ss_pred HHH----HHHHHHHHhC-CCCcEEEEeCCCCC
Q 001187 1092 TEL----SETALMLSSA-TRNSLVVLDELGRG 1118 (1129)
Q Consensus 1092 ~em----~e~~~il~~a-t~~sLvllDElGRG 1118 (1129)
.++ ..+...++.. ....|||||++..=
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 112 2233444432 56789999998754
No 170
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.68 E-value=0.012 Score=62.77 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+++|.||||+||||+++.++-.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4679999999999999999998754
No 171
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.66 E-value=0.034 Score=58.03 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.0
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+.++|+||.|.||||+++.++-
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 172
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.64 E-value=0.017 Score=60.24 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+++|+||||+||||+++.++-.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998743
No 173
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.58 E-value=0.028 Score=59.18 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.++|+||.|+||||+++.++-..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999987543
No 174
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.56 E-value=0.017 Score=66.22 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=21.4
Q ss_pred eEEEEecCCCchhHHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+.+|+||||+||||+|+.|+.+.
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHhc
Confidence 99999999999999999998654
No 175
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.55 E-value=0.016 Score=60.37 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=19.5
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+++||||||+||||+.|.++-
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 176
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.52 E-value=0.017 Score=59.96 Aligned_cols=21 Identities=38% Similarity=0.176 Sum_probs=19.2
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+++|+|+||+||||++|.++-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999874
No 177
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.43 E-value=0.019 Score=60.09 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.7
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+++++|+||+|+||||+++.++
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHH
Confidence 35799999999999999999876
No 178
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.42 E-value=0.021 Score=65.75 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+++|+||||+||||+|+.++-.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3578999999999999999998854
No 179
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.39 E-value=0.025 Score=75.39 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=29.6
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.|-+|++|.. ..+..++|+||+|+||||+++.+.
T Consensus 1093 ~VL~~isl~I-~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1093 EILKGLSFSV-EPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp CSEEEEEEEE-CTTCEEEEECSTTSSTTSHHHHHT
T ss_pred ccccceeEEE-CCCCEEEEECCCCChHHHHHHHHh
Confidence 5778888877 467899999999999999999876
No 180
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.34 E-value=0.017 Score=65.06 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.8
Q ss_pred eEEEEecCCCchhHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+.+|+||||+||||+|..|..+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHT
T ss_pred cEEEECCCCCcHHHHHHHHHHH
Confidence 9999999999999999998865
No 181
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.30 E-value=0.018 Score=67.79 Aligned_cols=35 Identities=23% Similarity=0.116 Sum_probs=28.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+-+++ +.. ..+.+++|.||||+||||||++|+-.
T Consensus 146 ~vld~v-l~i-~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 146 RAINAL-LTV-GRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp HHHHHH-SCC-BTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEeee-EEe-cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 456667 766 46789999999999999999999854
No 182
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.28 E-value=0.039 Score=60.74 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=20.4
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+.++|+||+|.||||++|.++-
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 183
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.25 E-value=0.023 Score=65.11 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=26.0
Q ss_pred cccccccccCCCCCCceEEEEecCCCchhHHHHHHHHH
Q 001187 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1013 ~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+||-.|.=- -+..++|+||||+|||||+|.++-+
T Consensus 159 ~~v~~~v~~~---lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 159 KFIPKEARPF---FAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp GGSCTTTGGG---TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hhCCHHHHHh---hhCeEEEECCCCCCHHHHHHHHHHH
Confidence 3566655420 0357899999999999999998754
No 184
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.22 E-value=0.081 Score=60.67 Aligned_cols=92 Identities=22% Similarity=0.183 Sum_probs=53.0
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHhH-cCCeecCCCcccchhhhhhhccCcc-chHhhcccchHHHHHHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALMLS 1102 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilAQ-iG~~VPA~~a~l~~~d~i~trig~~-d~i~~g~StF~~em~e~~~il~ 1102 (1129)
..+++++|.||.|+|||||..+++..+.... -.+|+-++...-.. ...++|.. +++.--...-..++.++..-+.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~---~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV---YARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH---HHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 3567999999999999999999886654321 22466665321111 23345543 2221111111234444444444
Q ss_pred hCCCCcEEEEeCCCCCC
Q 001187 1103 SATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1103 ~at~~sLvllDElGRGT 1119 (1129)
.....++||||.++.=.
T Consensus 149 ~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALT 165 (366)
T ss_dssp TTTCCSEEEEECTTTCC
T ss_pred hcCCCCEEEEeChHHhc
Confidence 44567899999998644
No 185
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.21 E-value=0.041 Score=61.96 Aligned_cols=92 Identities=17% Similarity=0.244 Sum_probs=51.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhH-------cCCeecCCCc-ccchhhhhhhccCcc-chHhhcc---cchHH-
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQ-------VGADVPAEIF-EISPVDRIFVRMGAK-DHIMAGQ---STFLT- 1092 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQ-------iG~~VPA~~a-~l~~~d~i~trig~~-d~i~~g~---StF~~- 1092 (1129)
.+++++|+||+|+||||++.+++..+.+.+ -..|+-.+.. .-..+-.+..++|.. +.+..+. ..+..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 467999999999999999999987654431 1246655542 111122234455543 1111111 11111
Q ss_pred H----HHHHHHHHHhCCCCcEEEEeCCCC
Q 001187 1093 E----LSETALMLSSATRNSLVVLDELGR 1117 (1129)
Q Consensus 1093 e----m~e~~~il~~at~~sLvllDElGR 1117 (1129)
+ +..+..+++......|||||++..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 1 223333444435678999999874
No 186
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.21 E-value=0.034 Score=59.38 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=22.0
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vil 1053 (1129)
++.++|.||+|+||||++.+..+-.++
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~ 102 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFI 102 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchh
Confidence 357999999999999999887665444
No 187
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.13 E-value=0.051 Score=59.41 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.2
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+.++|+||.|.||||++|.++-
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35699999999999999999873
No 188
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.12 E-value=0.027 Score=63.88 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.5
Q ss_pred ceEEEEecCCCchhHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+|+||||+||||+|..|+...
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999987654
No 189
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=94.07 E-value=0.071 Score=43.66 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=38.8
Q ss_pred ccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhcc
Q 001187 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDL 149 (1129)
Q Consensus 106 vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l 149 (1129)
+|..|-+.|-+ ..||.|+|+..|.......|+++||..-|+.+
T Consensus 6 ~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~ 48 (58)
T 4hcz_A 6 EGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLW 48 (58)
T ss_dssp TTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEEEEEG
T ss_pred cCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeEEEEh
Confidence 68889999985 88999999999999999999999999877654
No 190
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.95 E-value=0.068 Score=60.59 Aligned_cols=89 Identities=25% Similarity=0.153 Sum_probs=47.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHh----HcCC---eecCCCc--ccchhhhhhhccCccchHhhcccchHHH-HHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILA----QVGA---DVPAEIF--EISPVDRIFVRMGAKDHIMAGQSTFLTE-LSE 1096 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilA----QiG~---~VPA~~a--~l~~~d~i~trig~~d~i~~g~StF~~e-m~e 1096 (1129)
++.++|+||.|.||||+++.++-..--. ..++ +|.|... ...++..|+..+|..-. ..|.+ ..+ +..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~--~~~~~~~ 120 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP-FTGLS--VGEVYER 120 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC-SSCCC--HHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC-CCCCC--HHHHHHH
Confidence 4679999999999999999988433111 0132 2333221 11233445544443210 01111 122 233
Q ss_pred HHHHHHhCCCCcEEEEeCCCCC
Q 001187 1097 TALMLSSATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1097 ~~~il~~at~~sLvllDElGRG 1118 (1129)
+...+.....+.+|+|||+..=
T Consensus 121 l~~~l~~~~~~~vlilDEi~~l 142 (387)
T 2v1u_A 121 LVKRLSRLRGIYIIVLDEIDFL 142 (387)
T ss_dssp HHHHHTTSCSEEEEEEETTTHH
T ss_pred HHHHHhccCCeEEEEEccHhhh
Confidence 4444444445679999999753
No 191
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.94 E-value=0.026 Score=59.41 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.8
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+++||||+|+||||+++.++-
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 192
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.92 E-value=0.0056 Score=65.61 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+++|+||||+||||+|+.|+.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 478899999999999999999654
No 193
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.92 E-value=0.031 Score=62.98 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=20.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..+++|+||||+||||+++.++.+
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999988643
No 194
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.89 E-value=0.028 Score=57.06 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+.+++|||++|+||||+++.++-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
No 195
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.88 E-value=0.046 Score=64.11 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=25.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
+.+++|+|++|+||||++..+| ..+++-|.-
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA--~~l~~~G~k 130 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA--RYFQKRGYK 130 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH--HHHHTTTCC
T ss_pred CeEEEEECcCCCCHHHHHHHHH--HHHHHCCCe
Confidence 5789999999999999998777 445666754
No 196
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.86 E-value=0.026 Score=63.71 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=19.4
Q ss_pred EEEEecCCCchhHHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
++|+||||+||||+++.++-.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998853
No 197
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.86 E-value=0.12 Score=58.14 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=26.1
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecC
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA 1062 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA 1062 (1129)
.+++++|+||.|+|||||..+++.. ...-..|+-+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~--~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA--LGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH--HHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh--CCCCEEEEEe
Confidence 4567899999999999999999865 2222346655
No 198
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.85 E-value=0.044 Score=66.24 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=21.8
Q ss_pred CceEEEEecCCCchhHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+..++|+||||+||||++|.++-..
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998554
No 199
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=93.80 E-value=0.029 Score=65.73 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=22.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+.+.+|+||||+||||+|+.|+.+.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4689999999999999999998654
No 200
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.79 E-value=0.027 Score=58.44 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.4
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..+++|+|++|+||||+.+.++-
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998874
No 201
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.76 E-value=0.026 Score=62.13 Aligned_cols=20 Identities=40% Similarity=0.595 Sum_probs=18.8
Q ss_pred EEEEecCCCchhHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l 1049 (1129)
++|+||||+||||++|.++-
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999884
No 202
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.76 E-value=0.035 Score=63.74 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
.+.+||||||+||||+|-.|+++.+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~l~ 50 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFALF 50 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999997543
No 203
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.74 E-value=0.023 Score=65.42 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=25.8
Q ss_pred cccccCCCCCCceEEEEecCCCchhHHHHHHHH
Q 001187 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1017 Ndi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+++.++. ..+++++|+||||+||||+++.++-
T Consensus 160 ~~~~~~i-~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 160 KCMVYNI-PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHCC-TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred Hhccccc-CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455554 3567999999999999999999985
No 204
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.69 E-value=0.026 Score=67.62 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.1
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+|||||||||+|+.++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5579999999999999999887
No 205
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.56 E-value=0.037 Score=57.65 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.2
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+||+|+||||+++.++
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999876
No 206
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.31 E-value=0.023 Score=63.63 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.++|+||+|.||||+++.++-..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3569999999999999999988543
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.30 E-value=0.037 Score=61.72 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.5
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|.||||+||||||+.++
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 208
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.27 E-value=0.038 Score=57.55 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.7
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+++++|+||+|+||||+++.++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999976
No 209
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.27 E-value=0.069 Score=59.92 Aligned_cols=64 Identities=22% Similarity=0.388 Sum_probs=39.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCC
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~ 1107 (1129)
..++|+||.|.||||+++.++- +.|+.+-.-.+. .+ . ...++..++......
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~-----~~~~~~~~~~~~--~~----~-----------------~~~~~~~~~~~~~~~ 107 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY-----EMSANIKTTAAP--MI----E-----------------KSGDLAAILTNLSEG 107 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH-----HTTCCEEEEEGG--GC----C-----------------SHHHHHHHHHTCCTT
T ss_pred CeEEEECcCCCCHHHHHHHHHH-----HhCCCeEEecch--hc----c-----------------chhHHHHHHHhccCC
Confidence 4589999999999999999853 234322111110 00 0 112334455556678
Q ss_pred cEEEEeCCCCCC
Q 001187 1108 SLVVLDELGRGT 1119 (1129)
Q Consensus 1108 sLvllDElGRGT 1119 (1129)
.+|+|||+++=.
T Consensus 108 ~vl~lDEi~~l~ 119 (338)
T 3pfi_A 108 DILFIDEIHRLS 119 (338)
T ss_dssp CEEEEETGGGCC
T ss_pred CEEEEechhhcC
Confidence 899999998643
No 210
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.19 E-value=0.071 Score=62.67 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=21.1
Q ss_pred ceEEEEecCCCchhHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
+.++|+||+|.||||+++.++-..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999998544
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.17 E-value=0.073 Score=57.33 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.3
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
-++|+||+|+||||++|.++-
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 489999999999999999984
No 212
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.09 E-value=0.056 Score=60.59 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.7
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHh
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilA 1054 (1129)
..+++++|+||+|+|||||+.+++..+.+.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~ 125 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNP 125 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 346899999999999999999999776554
No 213
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.09 E-value=0.14 Score=57.36 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=56.3
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHh---HcCCeecCCCcccchhhhhhhccCcc-chHhhcccchHHHH-HHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILA---QVGADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTEL-SETAL 1099 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilA---QiG~~VPA~~a~l~~~d~i~trig~~-d~i~~g~StF~~em-~e~~~ 1099 (1129)
..+ ++.|.||.|+|||||+-|++..+... ..-.||-++.+--+ ....|+|.. +++.--.-+-..++ .++..
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~---~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP---AYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH---HHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH---HHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 345 78999999999999988887555432 12256766644322 135677754 44443333334454 55555
Q ss_pred HHH--hCCCCcEEEEeCCCCCC
Q 001187 1100 MLS--SATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1100 il~--~at~~sLvllDElGRGT 1119 (1129)
.|. .....+||++|-+..=.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCB
T ss_pred HHHHhhccCceEEEEecccccc
Confidence 552 23567999999987543
No 214
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.06 E-value=0.071 Score=59.21 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.6
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
++.++|+||+|+||||++|.++-
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 45799999999999999999884
No 215
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.06 E-value=0.043 Score=61.15 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.3
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|.||||+||||||+.++
T Consensus 169 geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHS
T ss_pred CCeEEEECCCCCcHHHHHHHhc
Confidence 4589999999999999999997
No 216
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.01 E-value=0.041 Score=59.24 Aligned_cols=20 Identities=45% Similarity=0.590 Sum_probs=18.9
Q ss_pred EEEEecCCCchhHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l 1049 (1129)
++|+||||+||||++|.++-
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999884
No 217
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.85 E-value=0.06 Score=54.96 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+++|+|++|+||||+.+.++-.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998743
No 218
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=92.80 E-value=0.11 Score=47.49 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=39.2
Q ss_pred cccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEc-cCCchhhhccC
Q 001187 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1129)
Q Consensus 103 ~~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddgd~e~l~l~ 150 (1129)
..-+|.-|-+.|+.|+.||.|.|.+... .+...|.| |=|..|.+.++
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~ 74 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLK 74 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHH
Confidence 3458999999999999999999999974 45788888 88998877643
No 219
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.75 E-value=0.05 Score=55.28 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.0
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+|++|+||||+.+.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 220
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.65 E-value=0.12 Score=57.26 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=21.0
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.++|+||.|.|||++.|.+|-.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999843
No 221
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.65 E-value=0.11 Score=61.60 Aligned_cols=21 Identities=48% Similarity=0.513 Sum_probs=19.3
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
-++|+||+|.||||++|.++-
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999984
No 222
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.62 E-value=0.027 Score=61.16 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=28.5
Q ss_pred ccccccccCCCCC---CceEEEEecCCCchhHHHHHHHH
Q 001187 1014 FVPNDITIGGHGN---ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1014 fvpNdi~l~~~~~---~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+-+|+++.. .. +.+++|+|++|+||||+.|.++-
T Consensus 33 ~~l~~~~~~i-~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 33 QILKKKAEEV-KPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHHHHHHHTT-HHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhhhh-hhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4667777765 33 57899999999999999999873
No 223
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.59 E-value=0.055 Score=61.77 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.4
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|.||||+||||||+.++
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHh
Confidence 4689999999999999999987
No 224
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.54 E-value=0.061 Score=67.79 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=19.6
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
++.++|+||||+||||+|.++++.
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999988777443
No 225
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.54 E-value=0.07 Score=54.61 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.4
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+..++|||+.|+||||+.+.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999876
No 226
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.49 E-value=0.052 Score=59.41 Aligned_cols=21 Identities=43% Similarity=0.562 Sum_probs=19.2
Q ss_pred EEEEecCCCchhHHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
++|+||||+||||++|.++-.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999998843
No 227
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.44 E-value=0.061 Score=53.64 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.6
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+++|+||.|+||||+.+.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999876
No 228
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.43 E-value=0.14 Score=54.76 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=19.8
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+.++|+||.|.||||+++.++-
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999874
No 229
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.42 E-value=0.073 Score=56.83 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.6
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+.+++|+||+|+||||+++.++-
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999874
No 230
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.41 E-value=0.2 Score=58.95 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.8
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..++|+||.|.||||+++.++-
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999884
No 231
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.38 E-value=0.059 Score=55.29 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.1
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.++|.||||+|||||++.++-
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999873
No 232
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.26 E-value=0.053 Score=56.09 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.7
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+..++|.|+||+|||||++.++
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 35679999999999999999987
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.16 E-value=0.074 Score=67.38 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.4
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
++.++|+||||+||||++|.++-
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999973
No 234
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.04 E-value=0.035 Score=67.98 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+..++|+||||+||||++|.++-+
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 467999999999999999999853
No 235
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.04 E-value=0.066 Score=55.13 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.0
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
-++|.||||+||||||+.++-
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 478999999999999999874
No 236
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.03 E-value=0.068 Score=57.92 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.1
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+++|+||+|+||||+.+.++
T Consensus 2 ~li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 368999999999999999887
No 237
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.00 E-value=0.14 Score=54.83 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=42.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCee--cCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhC
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1104 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V--PA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~a 1104 (1129)
+.+.++|||=++||||.|-+.+.-...+..-+.| |+..-+.+ ..|.+|+|..-... +.+.. .+ ++..+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg--~~i~sr~G~~~~a~-~i~~~-~d------i~~~~ 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEAL-PACLL-RD------VAQEA 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEE-EESSG-GG------GHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch--HHHHhhcCCeeEEE-ecCCH-HH------HHHHh
Confidence 5799999999999999988887766655544443 66665555 67888886541100 01111 11 22222
Q ss_pred CCCcEEEEeCC
Q 001187 1105 TRNSLVVLDEL 1115 (1129)
Q Consensus 1105 t~~sLvllDEl 1115 (1129)
..-++|+|||.
T Consensus 89 ~~~dvViIDEa 99 (234)
T 2orv_A 89 LGVAVIGIDEG 99 (234)
T ss_dssp TTCSEEEESSG
T ss_pred ccCCEEEEEch
Confidence 56789999995
No 238
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.94 E-value=0.15 Score=52.88 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=45.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcCCee--cCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHh
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSS 1103 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V--PA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~ 1103 (1129)
.+++.++|||=++||||.|-.++.-..-+..=..| |+...+.+ ...|.+|+|..-. ....+.. ..++..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~-~~~i~s~~g~~~~-a~~~~~~-------~~i~~~ 77 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYS-KEDVVSHMGEKEQ-AVAIKNS-------REILKY 77 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSCEEE-CEEESSS-------THHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccch-HHHHHhhcCCcee-eEeeCCH-------HHHHHH
Confidence 36799999999999999998887665544433332 44332322 2346667663311 0011111 133333
Q ss_pred CC-CCcEEEEeCCCC
Q 001187 1104 AT-RNSLVVLDELGR 1117 (1129)
Q Consensus 1104 at-~~sLvllDElGR 1117 (1129)
+. ..++|+|||...
T Consensus 78 ~~~~~dvViIDEaqf 92 (191)
T 1xx6_A 78 FEEDTEVIAIDEVQF 92 (191)
T ss_dssp CCTTCSEEEECSGGG
T ss_pred HhccCCEEEEECCCC
Confidence 33 468999999643
No 239
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.91 E-value=0.095 Score=52.03 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=21.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
.+++|+||.|+||||+.+.+ .+.|+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L------~~~g~~ 27 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL------KERGAK 27 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH------HHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHH------HHCCCc
Confidence 47899999999999999976 566754
No 240
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.88 E-value=0.18 Score=56.39 Aligned_cols=23 Identities=48% Similarity=0.499 Sum_probs=20.3
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+.++|+||.|.|||+++|.++-
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35699999999999999999874
No 241
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=91.76 E-value=0.37 Score=40.80 Aligned_cols=43 Identities=14% Similarity=0.342 Sum_probs=35.5
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhccC
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l~ 150 (1129)
-+|..|=+.|-+ ..||-|+|++ ....+..|+++|..+-|+.++
T Consensus 17 ~~geDVL~rw~D-G~fYLGtIVd--~~~~~ClV~FeD~S~~Wv~~k 59 (69)
T 2xk0_A 17 ALQEDVFIKCND-GRFYLGTIID--QTSDQYLIRFDDQSEQWCEPD 59 (69)
T ss_dssp CTTCEEEEECTT-SCEEEEEEEE--ECSSCEEEEETTCCEEEECTT
T ss_pred ccCCeEEEEecC-CCEEEEEEEe--cCCceEEEEecCCcceeeeHH
Confidence 478888899985 8899999965 668889999999998877643
No 242
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.74 E-value=0.061 Score=65.03 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.+++|+|+||+||||++|.++-.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3578999999999999999998744
No 243
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.65 E-value=0.052 Score=55.42 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+++.|+||+|+||||+++.++-+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998744
No 244
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=91.65 E-value=0.042 Score=66.00 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+|||+||+||||+|..|+++.
T Consensus 61 g~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 399999999999999999998763
No 245
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.65 E-value=0.087 Score=52.93 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=19.7
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+++|+||.|+||||+.+.++-
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999998763
No 246
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.63 E-value=0.14 Score=56.48 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred eEEEEecCCCchhHHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.++|+||+|.||||++|.++-..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 58999999999999999988644
No 247
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=91.62 E-value=0.23 Score=59.28 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=41.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhH----cCCee-cCCCcccchhhhhhhccC-ccchH---hhcccchHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQ----VGADV-PAEIFEISPVDRIFVRMG-AKDHI---MAGQSTFLTELSETA 1098 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQ----iG~~V-PA~~a~l~~~d~i~trig-~~d~i---~~g~StF~~em~e~~ 1098 (1129)
..++|.|++|+||||+|+++.+..++.+ +-+++ -.+...+..+..|-..++ .-++. ..-......||.+-.
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~~a~~~L~~~~~EmerR~ 247 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRY 247 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999886554432 22222 222344555544322111 11222 223334456777766
Q ss_pred HHHH
Q 001187 1099 LMLS 1102 (1129)
Q Consensus 1099 ~il~ 1102 (1129)
.++.
T Consensus 248 ~ll~ 251 (512)
T 2ius_A 248 KLMS 251 (512)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 248
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.61 E-value=0.2 Score=44.76 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=42.0
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhccC
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l~ 150 (1129)
=+|.-|.+..++|+.||.|.|..-++.++-|.+.||=|.+|.+...
T Consensus 23 k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~ 68 (85)
T 2eqk_A 23 ENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVD 68 (85)
T ss_dssp CSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETT
T ss_pred cCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEcc
Confidence 3788899999999999999999999999999999999999988754
No 249
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.56 E-value=0.25 Score=54.48 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.-++|+||.|.|||++++.++-..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999988544
No 250
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.47 E-value=0.13 Score=57.20 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.8
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..++|+||.|.||||+++.++-
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999874
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.46 E-value=0.095 Score=52.78 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.5
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+++|+||.|+||||+.|.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999976
No 252
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.40 E-value=0.1 Score=54.57 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.3
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+.+++|+|++|+||||+.+.++-
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999874
No 253
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.37 E-value=0.044 Score=61.36 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.8
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+.+++|.||||+||||||+.++-
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHhcc
Confidence 46899999999999999999863
No 254
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.31 E-value=0.081 Score=59.16 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=21.2
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
+.++|+||.|.|||++++.++-...
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999998886443
No 255
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.27 E-value=0.11 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.2
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+|+.|+||||+.+.++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999886
No 256
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.25 E-value=0.091 Score=53.03 Aligned_cols=20 Identities=40% Similarity=0.429 Sum_probs=18.7
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.++|+||+|+||||+.|.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 48899999999999999987
No 257
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.25 E-value=0.16 Score=57.90 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.8
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+.++|+||.|.||||++|.++
T Consensus 117 ~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999987
No 258
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.20 E-value=0.17 Score=54.97 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.0
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
...++|+||.|.|||++++.++-.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999999998854
No 259
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.09 E-value=0.17 Score=56.72 Aligned_cols=23 Identities=43% Similarity=0.400 Sum_probs=20.3
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+.++|+||.|.|||+++|.++-
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999999884
No 260
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.08 E-value=0.11 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.8
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+|++|+||||+.+.++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999876
No 261
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=91.07 E-value=0.15 Score=48.06 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=41.4
Q ss_pred ccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEc-cCCchhhhccCcceEEEE
Q 001187 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGKEKIEWV 157 (1129)
Q Consensus 104 ~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddgd~e~l~l~~e~~~~~ 157 (1129)
.-+|.-|-+.|..|+.||.|.|++.+.. +...|.| |=|..|.+.++ +++-+
T Consensus 33 ~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~--~Lr~l 84 (110)
T 2diq_A 33 VHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLK--DLRAL 84 (110)
T ss_dssp CCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGG--GCEEC
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehH--HhhcC
Confidence 3478899999999999999999999864 5678888 88999987654 44444
No 262
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.01 E-value=0.071 Score=52.40 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=18.3
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|+||.|.|||++.|.++
T Consensus 26 ~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 38899999999999999886
No 263
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.94 E-value=0.094 Score=61.18 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=21.9
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+-+++.|. ++|.||||+||||||++++
T Consensus 25 ~vl~~vsf~-------I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 25 SVKRGFEFT-------LMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp TCC-CCCEE-------EEEECCTTSSHHHHHHHHT
T ss_pred EEecCCCEE-------EEEECCCCCcHHHHHHHHh
Confidence 345555553 5899999999999999998
No 264
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.92 E-value=0.096 Score=58.32 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=18.0
Q ss_pred EEEEecCCCchhHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l 1049 (1129)
++|.||||+||||||++++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999763
No 265
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.91 E-value=0.13 Score=57.74 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEecCCCchhHHHHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
++|+||+|.||||+++.++-...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999986543
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.90 E-value=0.12 Score=52.56 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=20.3
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+.+++|+||.|+||||+.+.++-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998773
No 267
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.85 E-value=0.11 Score=53.85 Aligned_cols=20 Identities=45% Similarity=0.752 Sum_probs=18.2
Q ss_pred ceEEEEecCCCchhHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQV 1047 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i 1047 (1129)
|.++|+||.|+||||+++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 56999999999999999875
No 268
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.77 E-value=0.13 Score=54.89 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+.+++|+|+||+||||+.+.++-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998763
No 269
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.70 E-value=0.12 Score=57.10 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.5
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+.+++|+||+|+||||+.+.++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999875
No 270
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.67 E-value=0.098 Score=56.52 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=20.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+.+++|+||+|+||||+.+.++-
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999873
No 271
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.63 E-value=0.12 Score=50.53 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=18.4
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|+||.|.|||++.|.++
T Consensus 29 ~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGC
T ss_pred cEEEECCCCccHHHHHHHHH
Confidence 38899999999999999887
No 272
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.50 E-value=0.24 Score=56.04 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.0
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
++.++|+||.|.|||+++|.++-.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998844
No 273
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.45 E-value=0.27 Score=56.49 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=19.3
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.++|+||.|.|||++++.++
T Consensus 149 ~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999986
No 274
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.23 E-value=0.19 Score=57.57 Aligned_cols=89 Identities=24% Similarity=0.112 Sum_probs=47.3
Q ss_pred CceEEE--EecCCCchhHHHHHHHHHHHHh------H-cCCeecCCCc--ccchhhhhhhccCccchHhhcccchHHHHH
Q 001187 1027 ASFILL--TGPNMGGKSTLLRQVCLAVILA------Q-VGADVPAEIF--EISPVDRIFVRMGAKDHIMAGQSTFLTELS 1095 (1129)
Q Consensus 1027 ~~~~ii--tGpN~~GKSt~lr~i~l~vilA------Q-iG~~VPA~~a--~l~~~d~i~trig~~d~i~~g~StF~~em~ 1095 (1129)
.+.++| +||-|.||||+++.++-..--. . .-+||.|... ...++..|+..+|.... ..+.+ ...-+.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~~~~~~ 127 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ-VRGAP-ALDILK 127 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC-CTTCC-HHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCCC-HHHHHH
Confidence 467888 9999999999999987432211 0 1135555321 12334445554443210 01111 111123
Q ss_pred HHHHHHHhCCCCcEEEEeCCCC
Q 001187 1096 ETALMLSSATRNSLVVLDELGR 1117 (1129)
Q Consensus 1096 e~~~il~~at~~sLvllDElGR 1117 (1129)
.+...|.....+-+|+|||+-.
T Consensus 128 ~l~~~l~~~~~~~llvlDe~~~ 149 (412)
T 1w5s_A 128 ALVDNLYVENHYLLVILDEFQS 149 (412)
T ss_dssp HHHHHHHHHTCEEEEEEESTHH
T ss_pred HHHHHHHhcCCeEEEEEeCHHH
Confidence 3444454445577999999843
No 275
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.09 E-value=0.39 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.387 Sum_probs=19.5
Q ss_pred eEEEEecCCCchhHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.++|+||.|.||||+++.++-.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998743
No 276
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.07 E-value=0.12 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=15.8
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+|+.|+||||+.+.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999875
No 277
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.94 E-value=0.15 Score=51.71 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.7
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+|+.|+||||+.+.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999876
No 278
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.93 E-value=0.33 Score=55.07 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=21.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.+.++|+||.|.||||+++.++-.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
No 279
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.92 E-value=0.15 Score=52.06 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=23.1
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcCC
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG~ 1058 (1129)
.+++|+||+|+||||+++.+.-. +...|.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~--l~~~g~ 35 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA--LCARGI 35 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH--HHHTTC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh--ccccCC
Confidence 57999999999999999987643 445553
No 280
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.76 E-value=0.31 Score=57.01 Aligned_cols=28 Identities=36% Similarity=0.402 Sum_probs=23.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
.+-++|.||.|.|||++.|.+| .++|+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA-----~e~~~~ 242 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACA-----AQTNAT 242 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH-----HHHTCE
T ss_pred CCeeEEECcCCCCHHHHHHHHH-----HHhCCC
Confidence 3569999999999999999988 456754
No 281
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.70 E-value=0.16 Score=51.37 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=19.7
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.++++|+|+.|+||||+.+.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3579999999999999999876
No 282
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.65 E-value=0.33 Score=56.15 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=23.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
.+-++|.||.|.|||.+.|.+| .++|+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA-----~e~~~~ 209 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVA-----HHTDCK 209 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHH-----HHHTCE
T ss_pred CCceEEeCCCCCCHHHHHHHHH-----HhhCCC
Confidence 3569999999999999999998 455654
No 283
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.51 E-value=0.49 Score=53.53 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=25.3
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vil 1053 (1129)
..+.+++|+|++|.|||||+.+++..+..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999999999977655
No 284
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.45 E-value=0.38 Score=56.51 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=26.0
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHh
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilA 1054 (1129)
..+.+++|+|+.|.|||||+.+++..+...
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~ 227 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALK 227 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 457899999999999999999999876653
No 285
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.37 E-value=0.31 Score=55.43 Aligned_cols=22 Identities=50% Similarity=0.513 Sum_probs=19.5
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+-++|+||.|.|||+++|.++-
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998884
No 286
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.36 E-value=0.43 Score=64.35 Aligned_cols=92 Identities=22% Similarity=0.185 Sum_probs=52.3
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHhH-cCCeecCCCcccchhhhhhhccCcc-chHhhcccchHHHHHHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALMLS 1102 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilAQ-iG~~VPA~~a~l~~~d~i~trig~~-d~i~~g~StF~~em~e~~~il~ 1102 (1129)
..+++++|.||+|.|||||+.+++..+.... --.|+-++...-.+ +..++|.. +++.-...+-..++.+...-+.
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql---~A~~lGvd~~~L~i~~~~~leei~~~l~~lv 806 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICDALA 806 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHH---HHHHcCCChhheEEecCCcHHHHHHHHHHHH
Confidence 4578999999999999999999987654321 11355555432222 13344422 2221111122234444433333
Q ss_pred hCCCCcEEEEeCCCCCC
Q 001187 1103 SATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1103 ~at~~sLvllDElGRGT 1119 (1129)
.....+||+||+|.-=.
T Consensus 807 ~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 807 RSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp HHTCCSEEEESCSTTCC
T ss_pred HccCCCEEEEechhhhc
Confidence 33567899999998544
No 287
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.31 E-value=0.2 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.1
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+|+.|+||||+.+.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 288
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.31 E-value=0.26 Score=52.11 Aligned_cols=81 Identities=21% Similarity=0.179 Sum_probs=40.8
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcCCee--cCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHh
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSS 1103 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V--PA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~ 1103 (1129)
.+.+.++|||=++||||.|-+.+.-..-+..-+.| |+..-+.+ ...|.+|+|..-.. .+.+.. ..++..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~g-e~~i~s~~g~~~~a-~~~~~~-------~~~~~~ 97 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYS-EEDVVSHNGLKVKA-VPVSAS-------KDIFKH 97 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCE-EECSSG-------GGGGGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcch-HHHHHhhcCCeeEE-eecCCH-------HHHHHH
Confidence 46799999999999999999988777666554444 44332222 23466666543110 011111 123333
Q ss_pred CC-CCcEEEEeCC
Q 001187 1104 AT-RNSLVVLDEL 1115 (1129)
Q Consensus 1104 at-~~sLvllDEl 1115 (1129)
+. +-++|+|||.
T Consensus 98 ~~~~~dvViIDEa 110 (214)
T 2j9r_A 98 ITEEMDVIAIDEV 110 (214)
T ss_dssp CCSSCCEEEECCG
T ss_pred HhcCCCEEEEECc
Confidence 33 4689999995
No 289
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=89.31 E-value=0.18 Score=58.80 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=20.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
...++|.|+|++||||||+.++-.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 457999999999999999998743
No 290
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.25 E-value=0.18 Score=51.64 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=18.6
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+++|+|+.|+||||+.+.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 68999999999999999887
No 291
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.20 E-value=0.21 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.213 Sum_probs=20.3
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..+++|+|+.|+||||+.+.++-
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998763
No 292
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.16 E-value=0.12 Score=53.70 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.0
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+++|+||.|+||||+++.++-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999998763
No 293
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.12 E-value=0.23 Score=55.06 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.9
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+.+++|+||.|+||||+++.++-..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999877543
No 294
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.07 E-value=0.41 Score=39.63 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=39.0
Q ss_pred ccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhcc
Q 001187 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDL 149 (1129)
Q Consensus 106 vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l 149 (1129)
+|..|=+.|- |..||.|+|+..|.......|.+.|+.+-|+..
T Consensus 10 eGqdVLarWs-DGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~ 52 (63)
T 2e5q_A 10 EGQYVLCRWT-DGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLW 52 (63)
T ss_dssp TTCEEEEECT-TSCEEEEEECCCCSTTSEEEEEETTSCEEEEEG
T ss_pred cCCEEEEEec-CCCEEEEEEEEEecCCCEEEEEEccCceeEEEe
Confidence 7889999996 788999999999999999999999999877754
No 295
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.96 E-value=0.2 Score=56.98 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=20.8
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
..+++|+|++|+||||||+.++-.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998753
No 296
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.86 E-value=0.21 Score=56.54 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=24.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHcCC
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~ 1058 (1129)
.+.+++|+|+||+||||+++.++.. +++.|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~--~~~~~~ 85 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML--LIREGL 85 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH--HHHTTC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH--HHhcCC
Confidence 3578999999999999999988743 344453
No 297
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.79 E-value=0.47 Score=55.56 Aligned_cols=28 Identities=39% Similarity=0.584 Sum_probs=23.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
.+-++|.||.|.|||++.|.|| .++|+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA-----~e~~~~ 242 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVA-----ATIGAN 242 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH-----HHHTCE
T ss_pred CCeEEEECCCCCcHHHHHHHHH-----HHhCCC
Confidence 4579999999999999999988 455654
No 298
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.77 E-value=0.11 Score=63.14 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=23.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
.++++|+||+|.||||+++.++ ..+.+.|..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~--~~l~~~g~~ 234 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVA--DLAESLGLE 234 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHH--HHHHHTTCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHH--HHHHhcCCe
Confidence 3689999999999999988765 344455643
No 299
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.76 E-value=0.35 Score=54.10 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=29.1
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHhH-cCCeecCC
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAE 1063 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilAQ-iG~~VPA~ 1063 (1129)
..+.+++|+|+.|.|||||+.+++..+.... -.+|+-.|
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 4578999999999999999999997765432 22344444
No 300
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.74 E-value=0.22 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.5
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+.+++|+|+.|+||||+.+.++-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999873
No 301
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.61 E-value=0.22 Score=50.45 Aligned_cols=22 Identities=36% Similarity=0.289 Sum_probs=19.5
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+++|+||.|+||||+.+.++-
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
No 302
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.49 E-value=0.89 Score=53.19 Aligned_cols=87 Identities=15% Similarity=0.268 Sum_probs=45.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCC---eecCCCcccchhhhhhh---ccCcc--chHhhcccchHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA---DVPAEIFEISPVDRIFV---RMGAK--DHIMAGQSTFLTELSETA 1098 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~---~VPA~~a~l~~~d~i~t---rig~~--d~i~~g~StF~~em~e~~ 1098 (1129)
.++++|+|++|+||||++..+|.. +++-|. +|.|+..+-..++++-+ +.|.. .....+... +++ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~--l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp--~~i--~~ 172 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY--IQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSP--VDI--VK 172 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH--HHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSS--STT--HH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCH--HHH--HH
Confidence 357999999999999999887744 344453 34444332222322111 11110 000000000 001 12
Q ss_pred HHHHhCCCCcEEEEeCCCCCC
Q 001187 1099 LMLSSATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1099 ~il~~at~~sLvllDElGRGT 1119 (1129)
..+..+...++||+|..|+..
T Consensus 173 ~~l~~~~~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 173 EGMEKFKKADVLIIDTAGRHK 193 (432)
T ss_dssp HHHHTTSSCSEEEEECCCSCS
T ss_pred HHHHHhhCCCEEEEcCCCCcc
Confidence 344555778999999999875
No 303
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.46 E-value=0.24 Score=50.92 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.0
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+|+-|+||||+.+.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999999876
No 304
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.45 E-value=0.22 Score=50.79 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=22.5
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHhHcCCee
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V 1060 (1129)
+++|+|+-|+||||+.+.++- .+...|+.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~--~l~~~g~~v 31 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKV 31 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHCCC-E
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCeE
Confidence 689999999999999998763 233347644
No 305
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.41 E-value=0.25 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+.+++|+|+-|+||||+.+.++-
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999998874
No 306
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.29 E-value=0.36 Score=51.06 Aligned_cols=53 Identities=25% Similarity=0.267 Sum_probs=28.4
Q ss_pred CCceEEEEecCCCchhH-HHHHHHHHHHHhHcCCee--cCCCcccchhhhhhhccCcc
Q 001187 1026 NASFILLTGPNMGGKST-LLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMGAK 1080 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt-~lr~i~l~vilAQiG~~V--PA~~a~l~~~d~i~trig~~ 1080 (1129)
.+.+.+||||-++|||| +|+.+ .-..-+..-+.| |+...+.+ ...|.+|+|..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~-~r~~~~g~kvli~kp~~D~R~~-~~~I~Sr~G~~ 82 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRL-RRGIYAKQKVVVFKPAIDDRYH-KEKVVSHNGNA 82 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH-HHHHHTTCCEEEEEEC------------CBTTBC
T ss_pred CceEEEEECCCCCCHHHHHHHHH-HHHHHcCCceEEEEeccCCcch-hhhHHHhcCCc
Confidence 46899999999999999 66664 333344433333 45433322 23577777753
No 307
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.29 E-value=0.23 Score=51.17 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=19.4
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+++|||+.|+||||+.+.++-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 308
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.13 E-value=0.28 Score=57.67 Aligned_cols=22 Identities=45% Similarity=0.472 Sum_probs=20.0
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+.++|+||.|.|||+++|.++-
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999884
No 309
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.13 E-value=0.26 Score=49.95 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.6
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..+++|+|+.|+||||+.+.++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999876
No 310
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.11 E-value=0.26 Score=50.96 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.7
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+.+++|+|+-|+||||+.+.++-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998874
No 311
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.06 E-value=0.72 Score=38.78 Aligned_cols=43 Identities=26% Similarity=0.402 Sum_probs=38.9
Q ss_pred ccceEEEecCCCCceEeEEEEeeeCCCCeEEEEccCCchhhhcc
Q 001187 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDL 149 (1129)
Q Consensus 106 vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Yddgd~e~l~l 149 (1129)
+|..|=+.|- |..||.|+|+..|.......|.+.|+..-|+..
T Consensus 12 eGqdVLarWs-DGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~ 54 (68)
T 2e5p_A 12 EGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLW 54 (68)
T ss_dssp TTCEEEEECT-TSSEEEEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred cCCEEEEEec-CCcEEEeEEEEEecCCcEEEEEEccCCeeeeee
Confidence 7888999997 599999999999999999999999999877754
No 312
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.03 E-value=0.24 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..+++|+||+|+||||+.+.++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999887
No 313
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.95 E-value=0.38 Score=56.15 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=23.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
.+-++|.||.|.|||++.|.+| .++|+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA-----~~~~~~ 233 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVA-----NSTKAA 233 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH-----HHHTCE
T ss_pred CceEEEECCCCCCHHHHHHHHH-----HHhCCC
Confidence 4569999999999999999998 455654
No 314
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.88 E-value=0.27 Score=49.81 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.8
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+.++|+||.|+||||+.+.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999887
No 315
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.82 E-value=0.24 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.6
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+.++|.||.|.||||+...++-
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999977654
No 316
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.74 E-value=0.43 Score=52.96 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=24.9
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
+.+++|+|+||+||||++..++.. +++.|.-
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~ 128 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFK 128 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCe
Confidence 578999999999999999998754 4555643
No 317
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.73 E-value=0.24 Score=49.39 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.0
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+++|+|+.|+||||+.+.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999876
No 318
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.62 E-value=0.18 Score=56.96 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.1
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
...++|+||.|.||||+++.++-
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998873
No 319
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.44 E-value=0.3 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.9
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+|+.|+||||+.+.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999886
No 320
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=87.40 E-value=0.34 Score=55.92 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.7
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+..++|.|+|++|||||+++++-
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999984
No 321
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.33 E-value=0.27 Score=48.74 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=18.6
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.++|.|++++||||+++.++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999986
No 322
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.28 E-value=0.29 Score=52.99 Aligned_cols=31 Identities=32% Similarity=0.384 Sum_probs=24.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
..+++|+|+.|+||||+.+.++-. |.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~--L~~~g~~ 34 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI--LSKNNID 34 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH--HHHTTCC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH--HHhCCCE
Confidence 458999999999999999998732 3345653
No 323
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.24 E-value=0.27 Score=55.35 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEecCCCchhHHHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
++|+||+|+||||+++.++-..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999988554
No 324
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.15 E-value=0.6 Score=54.81 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=23.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
.+-++|.||.|.|||++.|.|| .++|+.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA-----~e~~~~ 270 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVA-----NRTDAT 270 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHH-----HHHTCE
T ss_pred CCceEeeCCCCCcHHHHHHHHH-----hccCCC
Confidence 4569999999999999999998 455654
No 325
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.03 E-value=0.45 Score=60.67 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=40.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCC--CcccchhhhhhhccCccchHhhc---ccchHHHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE--IFEISPVDRIFVRMGAKDHIMAG---QSTFLTELSETALMLS 1102 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~--~a~l~~~d~i~trig~~d~i~~g---~StF~~em~e~~~il~ 1102 (1129)
+-++|+||+|.||||+++.++-...- -.||.. ...+-.++ .. .+..| ...|...+..+-.-+.
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~----~~~p~~l~~~~~~~l~-------~~-~l~~g~~~~g~~~~~l~~~~~~~~ 259 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVK----GDVPEGLKGKRIVSLQ-------MG-SLLAGAKYRGEFEERLKAVIQEVV 259 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHH----TCSCTTSTTCEEEEEC-------C------------CHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhc----CCCchhhcCCeEEEee-------hH-HhhccCccchHHHHHHHHHHHHHH
Confidence 45789999999999999999865422 123321 11111111 01 11111 1234444444444444
Q ss_pred hCCCCcEEEEeCCCC
Q 001187 1103 SATRNSLVVLDELGR 1117 (1129)
Q Consensus 1103 ~at~~sLvllDElGR 1117 (1129)
....+.+++|||+..
T Consensus 260 ~~~~~~iL~IDEi~~ 274 (854)
T 1qvr_A 260 QSQGEVILFIDELHT 274 (854)
T ss_dssp TTCSSEEEEECCC--
T ss_pred hcCCCeEEEEecHHH
Confidence 445678999999964
No 326
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.02 E-value=0.33 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.3
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
...+++|+|+.|+||||+.+.++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999876
No 327
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.00 E-value=0.32 Score=51.27 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.9
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..+++|+||.|+||||+.+.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 328
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.89 E-value=0.23 Score=54.44 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.4
Q ss_pred eEEEEecCCCchhHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
-++|+||.|.|||+++|.++-.
T Consensus 52 ~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998743
No 329
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.75 E-value=0.37 Score=56.07 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=25.5
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHH
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+-|....+.. ....+++|+|+.|+||||+.+.++
T Consensus 246 ~~p~~~~~~~-~~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 246 YLPESSSLLS-PNPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SBSTTSCSCC-SSCCEEEEESCTTSSHHHHHHHHT
T ss_pred cCCCccccCC-CCCEEEEEECCCCCCHHHHHHHHH
Confidence 3344444443 346799999999999999999876
No 330
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=86.73 E-value=0.45 Score=56.64 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=19.1
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+-++|+||.|.|||+++|.++
T Consensus 239 ~~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHH
Confidence 358999999999999999986
No 331
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.71 E-value=0.31 Score=49.08 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=18.6
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|++|+|||||+++++
T Consensus 9 ~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999986
No 332
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.58 E-value=0.31 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.4
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+++|+|+.|+||||+.+.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 333
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.48 E-value=0.6 Score=54.34 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=23.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
.+-++|.||.|.|||.+.|.+| .++|+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA-----~e~~~~ 243 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVA-----NQTSAT 243 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHH-----HHHTCE
T ss_pred CCCCceECCCCchHHHHHHHHH-----HHhCCC
Confidence 3569999999999999999998 455643
No 334
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=86.47 E-value=0.34 Score=49.09 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.0
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+++|+|+-|+||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 335
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.43 E-value=0.58 Score=63.97 Aligned_cols=91 Identities=21% Similarity=0.185 Sum_probs=55.0
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHh-HcCCeecCCCcccchhhhhhhccCcc-chHhhcccchHHHHHHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILA-QVGADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALMLS 1102 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilA-QiG~~VPA~~a~l~~~d~i~trig~~-d~i~~g~StF~~em~e~~~il~ 1102 (1129)
..++.++|+||.|+|||||..+++...+.. .-+.|+-++...-.+. ..++|-. +.+.--.........++...+.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~---a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~ 1155 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDTGEQALEICDALA 1155 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHH---HHHcCCChhHheeecCcchHHHHHHHHHHH
Confidence 357899999999999999999998766533 3456777775433332 1223321 1111000111122344555555
Q ss_pred hCCCCcEEEEeCCCCC
Q 001187 1103 SATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1103 ~at~~sLvllDElGRG 1118 (1129)
.....++|++||++-=
T Consensus 1156 ~~~~~dlvVIDsl~~L 1171 (2050)
T 3cmu_A 1156 RSGAVDVIVVDSVAAL 1171 (2050)
T ss_dssp HHTCCSEEEESCGGGC
T ss_pred HhCCCCEEEECCcccc
Confidence 5677899999998843
No 336
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.29 E-value=0.18 Score=60.11 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.2
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
-++|+||.|.|||++.|.++-
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGG
T ss_pred eeEeecCchHHHHHHHHHHHH
Confidence 388999999999999999984
No 337
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.29 E-value=0.37 Score=50.57 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.8
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..+++|+||.|+||||+.+.++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 338
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.23 E-value=0.43 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=19.6
Q ss_pred eEEEEecCCCchhHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
.++|+||.|.||||+++.++-.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999998854
No 339
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.17 E-value=0.38 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.0
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+|+.|+||||+.+.++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999887
No 340
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=86.00 E-value=0.4 Score=49.36 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.9
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+|+.|+||||+.+.++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999886
No 341
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.96 E-value=0.65 Score=58.42 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.2
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+-++|+||.|.|||++.|.+|
T Consensus 238 p~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999999988
No 342
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.92 E-value=0.37 Score=50.86 Aligned_cols=20 Identities=45% Similarity=0.441 Sum_probs=18.6
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+++|+||.|+||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.84 E-value=0.37 Score=50.09 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=18.1
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.++|+||.|+||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999875
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=85.73 E-value=0.39 Score=47.67 Aligned_cols=20 Identities=35% Similarity=0.273 Sum_probs=18.3
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.++|+|+.|+||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999876
No 345
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.73 E-value=0.34 Score=58.02 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=20.3
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+.++|+||.|.||||+++.++-
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 346
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.60 E-value=0.28 Score=57.80 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+-++|+||.|.|||++.+.+|-.
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 56899999999999999988844
No 347
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.56 E-value=0.42 Score=48.65 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=23.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcCCee
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V 1060 (1129)
.+++|+|+.|+||||++..++ -.|.+-|.-|
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~--~~l~~~g~~v 35 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWV--AAAVREGWRV 35 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHH--HHHHHTTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHH--HhhHhcCCee
Confidence 579999999999999998765 3455556433
No 348
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.43 E-value=0.4 Score=52.72 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=19.7
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+++|+|+.|+||||+.+.++-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998763
No 349
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=85.31 E-value=0.28 Score=54.58 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.8
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.++++++||.|.||||+++.++
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la 69 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALC 69 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHHHHH
Confidence 4678999999999999999986
No 350
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=85.26 E-value=0.32 Score=55.56 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.2
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.++|+||.|.||||+.|.++-
T Consensus 74 ~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999884
No 351
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=85.26 E-value=0.41 Score=47.93 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.1
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.-++|.|++++|||||++.++
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 458999999999999999986
No 352
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.18 E-value=0.52 Score=52.36 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=19.6
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
++++|+||-|.||||++++++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHH
Confidence 589999999999999999976
No 353
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=85.06 E-value=1.4 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.5
Q ss_pred CCceEEEEecCCCchhHHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+.+++|.|+.|+||||+++.++-
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998874
No 354
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=85.05 E-value=1.6 Score=51.26 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=33.6
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHhH-cCCeecCCCcccchhhhhh
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAEIFEISPVDRIF 1074 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilAQ-iG~~VPA~~a~l~~~d~i~ 1074 (1129)
..+.+++|+|+.|.|||||+-+++..+.... -.+|+-.|...-.+..|+.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~ 245 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLI 245 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHH
Confidence 4578999999999999999999998776541 1234444433333344433
No 355
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.02 E-value=0.37 Score=48.68 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=18.4
Q ss_pred EEEEecCCCchhHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l 1049 (1129)
++|.|++|+|||||++.++-
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999874
No 356
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.01 E-value=0.43 Score=49.66 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=18.0
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.++|+||-|+||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999875
No 357
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.78 E-value=0.82 Score=62.57 Aligned_cols=92 Identities=22% Similarity=0.185 Sum_probs=53.5
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHhH-cCCeecCCCcccchhhhhhhccCcc-chHhhcccchHHHHHHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALMLS 1102 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilAQ-iG~~VPA~~a~l~~~d~i~trig~~-d~i~~g~StF~~em~e~~~il~ 1102 (1129)
..+++++|.||.|+|||||+.+++..+.... --.|+-++...-.+ ...++|.. +++.--..+-..++.+....+.
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv 457 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICDALA 457 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH---HHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHH---HHHHcCCCHHHeEEeCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999986654321 11355554322111 13344432 2222111222345555554443
Q ss_pred hCCCCcEEEEeCCCCCC
Q 001187 1103 SATRNSLVVLDELGRGT 1119 (1129)
Q Consensus 1103 ~at~~sLvllDElGRGT 1119 (1129)
.....+||++|.+..=.
T Consensus 458 ~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 458 RSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp HHTCCSEEEESCGGGCC
T ss_pred HhcCCcEEEECCHHHhh
Confidence 44568899999987544
No 358
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=84.37 E-value=0.59 Score=48.63 Aligned_cols=59 Identities=24% Similarity=0.208 Sum_probs=32.0
Q ss_pred ccccccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCCee--cCCCcccchhhhhhhccC
Q 001187 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMG 1078 (1129)
Q Consensus 1014 fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V--PA~~a~l~~~d~i~trig 1078 (1129)
.||.-... .+++..|+||=++||||.|-+..-....+..-+.+ |+-.-+.+ +.|.+|+|
T Consensus 11 ~~~~~~~~----~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~--~~i~S~~g 71 (195)
T 1w4r_A 11 LVPRGSKT----RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDR 71 (195)
T ss_dssp ------------CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG--GSCCHHHH
T ss_pred ccccCCCC----ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch--hhhhhccC
Confidence 45554443 35799999999999996655555455566543332 55333333 34666665
No 359
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=84.23 E-value=0.51 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.8
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
...+++|||+-|+||||+.+.++
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999998765
No 360
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=84.14 E-value=1 Score=54.29 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.8
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAVIL 1053 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~vil 1053 (1129)
-++|.|..|+|||++|+.+.+..++
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eeEEECCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999998876554
No 361
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.14 E-value=0.51 Score=54.20 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=21.2
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vi 1052 (1129)
.-++|+||+|+||||+++.++....
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999886553
No 362
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=84.11 E-value=0.67 Score=54.05 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=23.8
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCC
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~ 1058 (1129)
+++++|+||||+||||++..++.. +++-|.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~--l~~~g~ 127 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGR 127 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH--HHTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCC
Confidence 568999999999999999988854 344453
No 363
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=84.10 E-value=0.24 Score=56.30 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.7
Q ss_pred eEEEEecCCCchhHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
-++|+||.|.|||++.|.++-.
T Consensus 53 ~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999843
No 364
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=83.93 E-value=0.52 Score=51.76 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEecCCCchhHHHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
++|+||.|.||||+++.++-.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999987543
No 365
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=83.69 E-value=1.1 Score=52.84 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=24.0
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ 1055 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQ 1055 (1129)
+..++|.||+|.||||+++.++..+-..+
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~ 179 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEH 179 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhcc
Confidence 45689999999999999999987665543
No 366
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=83.56 E-value=1 Score=47.25 Aligned_cols=43 Identities=26% Similarity=0.428 Sum_probs=37.5
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCCCeEEEEc-cCCchhhhcc
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDL 149 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddgd~e~l~l 149 (1129)
-+|.-|-+.|..|+.||.|.|++... +...|.| |.|..|.+.+
T Consensus 53 ~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~ 96 (218)
T 2wac_A 53 KRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPT 96 (218)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEG
T ss_pred CcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEch
Confidence 48899999999999999999999977 7788988 7799887754
No 367
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=83.37 E-value=0.39 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=17.5
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..+++||||-|+||||+.+.++-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998874
No 368
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=83.36 E-value=0.24 Score=62.77 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
++.++|+||||.||||++|.+|-..
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999998543
No 369
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.34 E-value=0.62 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.6
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
...+++|||+-|+||||+.+.++
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999887
No 370
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=83.30 E-value=0.59 Score=50.02 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=20.0
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+..++|+||-|+||||+.+.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999886
No 371
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=82.92 E-value=0.64 Score=48.96 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=25.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCee
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V 1060 (1129)
+.+++|.||.|+||||+++.++ -.|...|..|
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~--~~l~~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLA--ERLRERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH--HHHHTTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHH--HHHHHcCCCc
Confidence 5799999999999999999876 3455556543
No 372
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=82.81 E-value=0.53 Score=56.15 Aligned_cols=22 Identities=41% Similarity=0.458 Sum_probs=19.7
Q ss_pred eEEEEecCCCchhHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
-++|+||||+||||++|.|+-.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998843
No 373
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=82.77 E-value=0.64 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.0
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+++|||+-|+||||+.+.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999876
No 374
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=82.67 E-value=0.65 Score=48.57 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.8
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|+|+-|+||||+.+.++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999887
No 375
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=82.62 E-value=0.64 Score=48.41 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.6
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.++|+||.|+||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998873
No 376
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=82.57 E-value=2.4 Score=44.57 Aligned_cols=39 Identities=28% Similarity=0.229 Sum_probs=29.0
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHhH--cCCeecCC
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVILAQ--VGADVPAE 1063 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vilAQ--iG~~VPA~ 1063 (1129)
..+.+++|+|+.|+|||||+-+++......+ -++|+-.+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 3568999999999999999999987654433 23455444
No 377
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=82.51 E-value=0.59 Score=51.83 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.1
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..+++|.|+|++|||||++.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~ 29 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLL 29 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999987
No 378
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=82.20 E-value=0.67 Score=47.97 Aligned_cols=23 Identities=30% Similarity=0.143 Sum_probs=20.1
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..+++|||+-||||||+.+.++-
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998763
No 379
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=81.84 E-value=1.3 Score=44.85 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=40.4
Q ss_pred cccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEc-cCCchhhhccCcceEEEE
Q 001187 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGKEKIEWV 157 (1129)
Q Consensus 103 ~~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddgd~e~l~l~~e~~~~~ 157 (1129)
..-+|.-|-+.|+.|+.||.|.|.+.++.. ...|.| |=|..|.+ .+++-+
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v----~~lr~l 97 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAVT----QQFRQL 97 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEEE----SCEECC
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEEh----hhhhcc
Confidence 345889999999999999999999998765 688888 88988863 455544
No 380
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=81.84 E-value=0.77 Score=49.23 Aligned_cols=30 Identities=40% Similarity=0.516 Sum_probs=23.8
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCC
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~ 1058 (1129)
+.+++|.|+.|+||||+++.++- .|...|.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~--~l~~~~~ 56 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE--TLQQNGI 56 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH--HHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhcCC
Confidence 56999999999999999998874 3344454
No 381
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.18 E-value=1 Score=40.50 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=34.1
Q ss_pred cccccceEEEecC---CCCceEeEEEEeeeCCC--CeEEEEccCCc
Q 001187 103 EDVLRKRIRVYWP---LDKAWYEGCVKSFDKEC--NKHLVQYDDGE 143 (1129)
Q Consensus 103 ~~~vg~rv~v~Wp---~d~~~y~g~v~~~~~~~--~~h~v~Yddgd 143 (1129)
.-.+|.+|.|+++ .+..||+++|.+..... ..+.|.|.+=.
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~N 54 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFN 54 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSC
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCC
Confidence 3459999999997 58899999999988753 47999998766
No 382
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=81.06 E-value=0.71 Score=49.19 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=17.8
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+.+++|.||.|+||||+++.++-
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999998863
No 383
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=81.05 E-value=1.3 Score=46.06 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=40.0
Q ss_pred CcccccceEEEecCCCC--ceEeEEEEeeeCCCC--eEEEEccCCchhhhccC
Q 001187 102 GEDVLRKRIRVYWPLDK--AWYEGCVKSFDKECN--KHLVQYDDGEDELLDLG 150 (1129)
Q Consensus 102 ~~~~vg~rv~v~Wp~d~--~~y~g~v~~~~~~~~--~h~v~Yddgd~e~l~l~ 150 (1129)
+.=.||.||-..|.+.+ .||.|.|+.-+.... ++.|-||||...++.+.
T Consensus 67 ~~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~Yv~~~ 119 (213)
T 3dlm_A 67 DKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQS 119 (213)
T ss_dssp GGCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEEEECGG
T ss_pred cEEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcceecCc
Confidence 34459999999999875 899999998666443 89999999998887654
No 384
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=81.03 E-value=0.87 Score=47.99 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=24.5
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCC
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~ 1058 (1129)
+.+++|.|+.|+||||.++.++ -.|...|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~--~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVV--ETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHH--HHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHH--HHHHHcCC
Confidence 4689999999999999999876 44556664
No 385
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=81.00 E-value=1.4 Score=42.96 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=31.3
Q ss_pred cccceEEEecCCCCceEeEEEEeeeC----CCCeEEEEccCCc
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDK----ECNKHLVQYDDGE 143 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~----~~~~h~v~Yddgd 143 (1129)
-||.+|.|||+ |..||++.|..... ....+.|.|.+=.
T Consensus 14 ~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwN 55 (133)
T 1wgs_A 14 EIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFN 55 (133)
T ss_dssp CTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTC
T ss_pred CCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcC
Confidence 38999999998 78999999998664 3458999998644
No 386
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=80.79 E-value=0.87 Score=48.16 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.4
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.++++|.||.||||+|..+.++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999988876
No 387
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.72 E-value=1.6 Score=59.10 Aligned_cols=102 Identities=22% Similarity=0.205 Sum_probs=71.7
Q ss_pred ccccccccCCC--CCCceEEEEecCCCchhHHHHHHHH-HHHHhHcCCeecCCCcccchhhhhhhccCcc-chHhhcccc
Q 001187 1014 FVPNDITIGGH--GNASFILLTGPNMGGKSTLLRQVCL-AVILAQVGADVPAEIFEISPVDRIFVRMGAK-DHIMAGQST 1089 (1129)
Q Consensus 1014 fvpNdi~l~~~--~~~~~~iitGpN~~GKSt~lr~i~l-~vilAQiG~~VPA~~a~l~~~d~i~trig~~-d~i~~g~St 1089 (1129)
+..-|.-|+.. .+++++.|.||-++||||+.-.+.- ++-....-.|+-++.+--+.+ ...+|.. +++.--+..
T Consensus 1416 ~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~~l~~~~p~ 1492 (1706)
T 3cmw_A 1416 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPD 1492 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGGGCEEECCS
T ss_pred CHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHHHeEEeCCC
Confidence 55567777642 4678999999999999999766543 222333345777776655544 5667776 666666666
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 001187 1090 FLTELSETALMLSSATRNSLVVLDELGRG 1118 (1129)
Q Consensus 1090 F~~em~e~~~il~~at~~sLvllDElGRG 1118 (1129)
...+-.+++..|-.....++|++|.+-.=
T Consensus 1493 ~~e~~l~~~~~~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1493 TGEQALEICDALARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCSTTC
T ss_pred cHHHHHHHHHHHHHcCCCCEEEEccHHhC
Confidence 66667777777777778899999987543
No 388
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=80.68 E-value=0.87 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.0
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+.+++|.|+-|+||||+++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 389
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=80.60 E-value=0.8 Score=52.03 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=20.4
Q ss_pred ceEEEEecCCCchhHHHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
..++|.||+|+||||+.|.++-..
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 348999999999999999987543
No 390
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=80.57 E-value=0.85 Score=50.99 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=25.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcC-CeecCCCc
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIF 1065 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG-~~VPA~~a 1065 (1129)
..+++|+||.|+||||+.+.++- +.| -.|.|++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~-----~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK-----RLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-----TTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHH-----hCccceeecCcc
Confidence 35899999999999999888763 234 34566654
No 391
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.40 E-value=0.93 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.1
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..+++|+||.|+||||+.+.++-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 46899999999999999988763
No 392
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=80.22 E-value=0.84 Score=51.23 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=24.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcC-CeecCCC
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEI 1064 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG-~~VPA~~ 1064 (1129)
.+++|+||.|+||||+.+.++- +.| .+|.+++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~-----~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD-----ALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-----HSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHH-----HcCCcEEeccc
Confidence 4799999999999999888773 444 3455544
No 393
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=80.22 E-value=0.82 Score=51.70 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=24.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcC-CeecCCCc
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIF 1065 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG-~~VPA~~a 1065 (1129)
.+++|+||.|+||||+.+.++- +.| ..+.+++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~-----~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK-----KFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-----HTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHH-----HcCCceeccccc
Confidence 4799999999999999988774 334 44555554
No 394
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=80.10 E-value=4.6 Score=36.69 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=31.4
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCC--CeEEEEccCCc
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKEC--NKHLVQYDDGE 143 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~--~~h~v~Yddgd 143 (1129)
-||.+|.|++ +..||+++|.+..... ..+.|.|.+=.
T Consensus 25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~N 63 (92)
T 2ro0_A 25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYN 63 (92)
T ss_dssp CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC
Confidence 4999999998 8899999999877644 48999998766
No 395
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=79.19 E-value=0.83 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.4
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..++.+|+|+-|+||||+|+.++
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~ 182 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRV 182 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHC
T ss_pred cccEEEEEcCCCCCHHHHHHHHh
Confidence 35789999999999999998876
No 396
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=79.17 E-value=0.93 Score=47.12 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=18.9
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.+++|+|+.|+||||+.+.++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999998876
No 397
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=79.14 E-value=1.6 Score=49.05 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=20.7
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
...++++||.|.||||+.+.++-.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeEEEECCCCchHHHHHHHHHHH
Confidence 457999999999999999988743
No 398
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=79.03 E-value=1.1 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.3
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..+++|+|+-|+||||+.+.++-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998873
No 399
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=79.03 E-value=1.3 Score=50.79 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=28.9
Q ss_pred ccccCCCCCCceEEEEecCCCchhHHHHHHHHHHHHhHcCC
Q 001187 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1129)
Q Consensus 1018 di~l~~~~~~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~ 1058 (1129)
|+.+.. .++..++|.||+|+||||++++|+-.+--.+-++
T Consensus 166 D~~~pi-~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v 205 (422)
T 3ice_A 166 DLASPI-GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC 205 (422)
T ss_dssp HHHSCC-BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTS
T ss_pred eeeeee-cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCe
Confidence 555544 3467899999999999999999875554333343
No 400
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=78.71 E-value=0.94 Score=47.94 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=18.9
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.-++|.|++|+|||||++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHc
Confidence 348999999999999999987
No 401
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=78.62 E-value=0.86 Score=48.52 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=22.6
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHhHcCCee
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V 1060 (1129)
.+++.|+-|.||||++-.+| ..+++-|.-|
T Consensus 8 ~I~~~~kgGvGKTt~a~~la--~~l~~~G~~V 37 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAA--HAQLRQGVRV 37 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHH--HHHHHTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHH--HHHHHCCCCE
Confidence 37899999999999976665 4455667544
No 402
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=78.60 E-value=1.1 Score=46.76 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=18.5
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
++.++|+||.|+||||+...++
T Consensus 34 g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999876543
No 403
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.58 E-value=2.1 Score=53.66 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.2
Q ss_pred CceEEEEecCCCchhHHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.+-++|+||.|.||||+++.++-.+
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999988643
No 404
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=78.38 E-value=1 Score=51.51 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.5
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
++++|.|+|++||||||+.++-
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHC
Confidence 3588999999999999999873
No 405
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=78.37 E-value=1.7 Score=51.75 Aligned_cols=29 Identities=24% Similarity=0.113 Sum_probs=24.9
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHH
Q 001187 1025 GNASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1129)
Q Consensus 1025 ~~~~~~iitGpN~~GKSt~lr~i~l~vil 1053 (1129)
..+.+++|+|+.|.|||||+-+++..+..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 35679999999999999999999876644
No 406
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=78.11 E-value=2 Score=44.70 Aligned_cols=50 Identities=18% Similarity=0.362 Sum_probs=40.1
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCCCeEEEEc-cCCchhhhccCcceEEEE
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGKEKIEWV 157 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddgd~e~l~l~~e~~~~~ 157 (1129)
-+|.-|-+.++.|+.||.|.|++..+. +...|.| |=|..|.+.+ .+++.+
T Consensus 67 ~~G~~c~a~~~~d~~wyRa~V~~~~~~-~~~~V~~vDyG~~~~v~~--~~l~~l 117 (201)
T 4b9w_A 67 EIGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTT--DQLQAI 117 (201)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETTTCCEEEECG--GGEEEC
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEccCCEEEEEH--HHhccC
Confidence 378889999999999999999998764 4578888 9999887754 455555
No 407
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=77.88 E-value=1.2 Score=56.82 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=29.2
Q ss_pred cEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHH
Q 001187 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLL 1044 (1129)
Q Consensus 993 ~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~l 1044 (1129)
.|.|+++|+--|. ||++.. +++++++|||+.|||||+|.
T Consensus 3 ~i~i~gar~hNLk------------ni~~~i-p~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 3 EIVVKGARVHNLK------------NITVRI-PKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp EEEEESBCSTTCC------------SBCCEE-ETTSEEEEEESTTSSSHHHH
T ss_pred cEEEeCccccccC------------cceecc-CCCcEEEEECCCCCcHHHHH
Confidence 4889999964442 233433 45789999999999999985
No 408
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=77.69 E-value=1.1 Score=45.19 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.4
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.-++|.|+.|+||||+++.++-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999863
No 409
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=77.29 E-value=1.4 Score=53.94 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
+++++|+||.|.||||+++.+.-+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999876543
No 410
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=77.22 E-value=2.3 Score=45.13 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=37.2
Q ss_pred ccceEEEecCCCCceEeEEEEeeeCCCCeEEEEc-cCCchhhhccC
Q 001187 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1129)
Q Consensus 106 vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddgd~e~l~l~ 150 (1129)
+|.-|-+.++.|+.||.|.|++..+. +...|.| |=|..|.+.++
T Consensus 68 ~G~~c~a~~~~d~~WyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~ 112 (226)
T 4b9x_A 68 IGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTD 112 (226)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEECSS-SEEEEECTTTCCEEEEEGG
T ss_pred CCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEecCCEEEEEHH
Confidence 68889999999999999999998754 5678888 99998877543
No 411
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=77.07 E-value=1.1 Score=56.65 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=30.6
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHH
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQ 1046 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~ 1046 (1129)
..|.|+++|+=-|. +|++.. +.+++++|||+.|||||||.--
T Consensus 14 ~~I~i~gar~hNLk------------ni~v~i-P~~~l~viTGvSGSGKSSLafd 55 (842)
T 2vf7_A 14 GFVQVRGARQHNLK------------DISVKV-PRDALVVFTGVSGSGKSSLAFG 55 (842)
T ss_dssp TEEEEEEECSTTCC------------SEEEEE-ESSSEEEEESSTTSSHHHHHTT
T ss_pred CeEEEeeccccCCC------------CeeEEe-cCCCEEEEECCCCCCHHHHHHH
Confidence 36999999964332 233333 3568999999999999999743
No 412
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=77.05 E-value=1.2 Score=50.87 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=19.1
Q ss_pred eEEEEecCCCchhHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
=++|.|+.+|||||++||+-++
T Consensus 35 killlG~~~SGKST~~kq~~i~ 56 (362)
T 1zcb_A 35 KILLLGAGESGKSTFLKQMRII 56 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998643
No 413
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=76.99 E-value=3.4 Score=37.66 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=31.8
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCC--CeEEEEccCCch
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKEC--NKHLVQYDDGED 144 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~--~~h~v~Yddgd~ 144 (1129)
-||.+|.|++ +..||+++|.+..... ..+.|.|.+=..
T Consensus 27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~Nk 66 (94)
T 2rnz_A 27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNK 66 (94)
T ss_dssp CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCS
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCc
Confidence 4999999997 8899999999877644 489999987773
No 414
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=76.79 E-value=1.1 Score=45.17 Aligned_cols=21 Identities=48% Similarity=0.648 Sum_probs=18.8
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.-++|.|++++||||+++.++
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999976
No 415
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=76.66 E-value=1.4 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.7
Q ss_pred CceEEEEecCCCchhHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
+.+++|.|+.|+||||.++.++-
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999998763
No 416
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=76.51 E-value=1.1 Score=44.66 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.6
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.-++|.|++++|||||++.+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358899999999999998875
No 417
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=76.45 E-value=1.3 Score=56.65 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=30.5
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHH
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQ 1046 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~ 1046 (1129)
..|.|+++|+--|. +|++.. +++++++|||+.|||||+|.=-
T Consensus 24 ~~I~i~gar~hNLk------------ni~v~i-P~~~lvv~tG~SGSGKSSLafd 65 (993)
T 2ygr_A 24 DRLIVKGAREHNLR------------SVDLDL-PRDALIVFTGLSGSGKSSLAFD 65 (993)
T ss_dssp CEEEEEEECSSSCC------------SEEEEE-ESSSEEEEEESTTSSHHHHHTT
T ss_pred CcEEEecccccccC------------ceeeec-cCCCEEEEECCCCCcHHHHHHH
Confidence 35899999964432 233433 4578999999999999998543
No 418
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=76.40 E-value=1.3 Score=42.90 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.2
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++||||+++.++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999986
No 419
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=76.39 E-value=3 Score=43.33 Aligned_cols=29 Identities=24% Similarity=0.154 Sum_probs=19.8
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
.++|.++||-||||..= |+++-.+.-|.-
T Consensus 30 ~i~v~tG~GkGKTTaA~--GlalRA~g~G~r 58 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAF--GTAARAVGHGKN 58 (196)
T ss_dssp CEEEEESSSSCHHHHHH--HHHHHHHHTTCC
T ss_pred eEEEECCCCCCHHHHHH--HHHHHHHHCCCe
Confidence 56777778899999854 444445555653
No 420
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=76.22 E-value=1.3 Score=50.40 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=19.0
Q ss_pred EEEEecCCCchhHHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
++|.|..+|||||++||+.++
T Consensus 12 ~lllG~~~sGKsT~~kq~~~~ 32 (354)
T 2xtz_A 12 LLLLGAGESGKSTIFKQIKLL 32 (354)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999844
No 421
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=76.20 E-value=3 Score=47.19 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=24.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcCCe
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~ 1059 (1129)
..+++|+|+.|+||||++..++.. +++.|--
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~--l~~~g~k 109 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMH--LIERGHR 109 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH--HHTTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH--HHhCCCc
Confidence 457899999999999999887744 4555643
No 422
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.02 E-value=2.5 Score=49.86 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=20.0
Q ss_pred eEEEEecCCCchhHHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
-++|+||+|.|||++++.++-.+
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988553
No 423
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=75.89 E-value=1.9 Score=37.85 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=32.1
Q ss_pred cccceEEEecCC--CCceEeEEEEeeeCCCC--eEEEEccCCc
Q 001187 105 VLRKRIRVYWPL--DKAWYEGCVKSFDKECN--KHLVQYDDGE 143 (1129)
Q Consensus 105 ~vg~rv~v~Wp~--d~~~y~g~v~~~~~~~~--~h~v~Yddgd 143 (1129)
.+|.+|.|+|++ +..||+++|.+.+...+ .+.|.|.+=.
T Consensus 7 ~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwn 49 (76)
T 2lcc_A 7 LTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWN 49 (76)
T ss_dssp STTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSC
T ss_pred CCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcC
Confidence 499999999994 36999999999887655 5799998654
No 424
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=75.54 E-value=1.4 Score=42.44 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=17.7
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|+.++||||+++.+.
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999876
No 425
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=75.53 E-value=1.3 Score=47.94 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=18.4
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|++++|||||++.+.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999985
No 426
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=75.10 E-value=1.5 Score=44.57 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=18.4
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|++++||||+++.++
T Consensus 25 ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57999999999999999876
No 427
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=75.05 E-value=1.5 Score=42.75 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=18.0
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999876
No 428
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=75.05 E-value=1.3 Score=51.80 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.9
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.-++|.|+|++|||||++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHh
Confidence 358899999999999999986
No 429
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=74.90 E-value=1 Score=54.26 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=48.7
Q ss_pred CCceEEEEecCCCchhHHHHHHHH---HHHHhH--cCCeecCCCc----ccchhhhhhhccCccch--HhhcccchHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCL---AVILAQ--VGADVPAEIF----EISPVDRIFVRMGAKDH--IMAGQSTFLTEL 1094 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l---~vilAQ--iG~~VPA~~a----~l~~~d~i~trig~~d~--i~~g~StF~~em 1094 (1129)
..+++.|+|+-|.||||+.+.++- ..+-.+ .-+||..... ...+...|+..+|..++ ...+... ...
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~--~~~ 228 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEH--VTS 228 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTT--CCH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCccccccccccc--ccH
Confidence 357999999999999999998873 112222 2346654432 23445567777765422 1111000 011
Q ss_pred HHHHHHHHh--CCC-CcEEEEeCCC
Q 001187 1095 SETALMLSS--ATR-NSLVVLDELG 1116 (1129)
Q Consensus 1095 ~e~~~il~~--at~-~sLvllDElG 1116 (1129)
.++...|+. ... +-|||||.+-
T Consensus 229 ~~l~~~l~~~L~~~kr~LlVLDdv~ 253 (549)
T 2a5y_B 229 VVLKRMICNALIDRPNTLFVFDDVV 253 (549)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCcEEEEEECCC
Confidence 222222322 354 8999999764
No 430
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=74.85 E-value=1.2 Score=45.45 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.3
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|++++||||+++.++
T Consensus 27 ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999986
No 431
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=74.84 E-value=1.5 Score=45.82 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=17.9
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
+++|.||.||||+|..+.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999988876
No 432
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=74.81 E-value=1.4 Score=56.15 Aligned_cols=42 Identities=26% Similarity=0.290 Sum_probs=30.6
Q ss_pred CcEEEeccCCCccccccCCCCcccccccccCCCCCCceEEEEecCCCchhHHHHH
Q 001187 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQ 1046 (1129)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fvpNdi~l~~~~~~~~~iitGpN~~GKSt~lr~ 1046 (1129)
..|.|+++|+--|. +|++.. +++++++|||+.|||||+|.=-
T Consensus 22 ~~I~i~gar~hNLk------------ni~v~i-P~~~lvv~tG~SGSGKSSLafd 63 (972)
T 2r6f_A 22 DKIIVKGARAHNLK------------NIDVEI-PRGKLVVLTGLSGSGKSSLAFD 63 (972)
T ss_dssp CEEEEEEECSSSCC------------SEEEEE-ETTSEEEEEESTTSSHHHHHTT
T ss_pred ceEEEeccccccCC------------ceeeec-cCCcEEEEECCCCCCHHHHHHH
Confidence 36999999964432 233433 4568999999999999998543
No 433
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=74.81 E-value=1.1 Score=48.37 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.7
Q ss_pred CCceEEEEecCCCchhHHHHHHH
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
++.+++|.|+-|+||||+++.++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999876
No 434
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=74.29 E-value=1.5 Score=44.88 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 001187 1090 FLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1129)
Q Consensus 1090 F~~em~e~~~il~~at~~sLvllDElGRGTst~DG~ 1125 (1129)
+..++.++...|......-+++-+|+|-|--+.+-.
T Consensus 111 ~~~~~~~ll~~l~~~~~~~vlVsNEVG~GiVP~~~~ 146 (180)
T 1c9k_A 111 IDDEIQILIAACQRCPAKVVLVTNEVGMGIVPENRL 146 (180)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCCCSSCCCSSHH
T ss_pred HHHHHHHHHHHHHccCCCEEEEEccccCCCCCCCHH
Confidence 344556666667766666677789999998776543
No 435
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=74.25 E-value=2.2 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.2
Q ss_pred eEEEEecCCCchhHHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.++|+||.|.|||++.|.++-..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999999988544
No 436
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=74.08 E-value=1.8 Score=45.00 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=16.8
Q ss_pred ceEEEEecCCCchhHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQV 1047 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i 1047 (1129)
.+.+|||+.|+|||++....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 47899999999999996443
No 437
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=73.85 E-value=1.7 Score=43.83 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.0
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.-++|.|+.++|||||++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 458999999999999999986
No 438
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=73.79 E-value=1.7 Score=45.32 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=19.6
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
.+++|-|+-|+||||.++.++-
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5899999999999999988763
No 439
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=73.73 E-value=1.6 Score=43.04 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=18.1
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999876
No 440
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=73.62 E-value=3.4 Score=39.87 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=30.0
Q ss_pred cccceEEEecCCCC----ceEeEEEEeeeCCCCeEEEEccCCc
Q 001187 105 VLRKRIRVYWPLDK----AWYEGCVKSFDKECNKHLVQYDDGE 143 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~----~~y~g~v~~~~~~~~~h~v~Yddgd 143 (1129)
-+|..|.|||..+. .||.|+|+... ...|.|.|++=+
T Consensus 62 ~~gd~VEV~~~~~d~ep~gWw~a~I~~~k--g~f~~V~y~~~~ 102 (128)
T 3h8z_A 62 TEGDEVEVYSRANEQEPCGWWLARVRMMK--GDFYVIEYAACD 102 (128)
T ss_dssp CTTCEEEEEECC---CCCEEEEEEEEEEE--TTEEEEEETTC-
T ss_pred CCCCEEEEEecCCCCCcCccEEEEEEEee--CCEEEEEEcCCC
Confidence 48999999999877 89999999976 578999998744
No 441
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=73.55 E-value=2.1 Score=54.39 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.1
Q ss_pred eEEEEecCCCchhHHHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~v 1051 (1129)
.++|+||+|.|||++.|.++-..
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999988544
No 442
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=73.51 E-value=1.7 Score=42.31 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=17.6
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|+.++|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999876
No 443
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=73.50 E-value=1.7 Score=42.41 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=17.7
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|+.++|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999876
No 444
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=73.45 E-value=1.7 Score=42.39 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=17.7
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|+.++|||||++.+.
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999975
No 445
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=73.40 E-value=0.86 Score=48.99 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=19.0
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
-++|+||.|.||||+++.++-
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999874
No 446
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=73.38 E-value=1.7 Score=42.09 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=18.1
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999876
No 447
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=73.32 E-value=1.2 Score=50.75 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=17.5
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|++|+|||||++++.
T Consensus 40 I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp EEECCCTTSCHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6899999999999999964
No 448
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=73.28 E-value=1.8 Score=42.24 Aligned_cols=19 Identities=47% Similarity=0.536 Sum_probs=17.7
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|+.++|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999986
No 449
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=73.27 E-value=1.7 Score=43.29 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=17.7
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|+.++|||||++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999876
No 450
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=73.26 E-value=1.7 Score=42.42 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=18.0
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999876
No 451
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=73.16 E-value=1.8 Score=48.82 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=25.8
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHhHcC-CeecCCCc
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIF 1065 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~vilAQiG-~~VPA~~a 1065 (1129)
+.+++|+||-|+||||+.+.+| .++| -+|-+++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA-----~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLA-----AHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH-----TTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHH-----HHCCCcEEccccc
Confidence 4589999999999999988877 3445 34556554
No 452
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=73.04 E-value=1.8 Score=41.95 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=17.6
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|+.++|||||++.+.
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998876
No 453
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=72.71 E-value=2.1 Score=42.15 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.4
Q ss_pred CceEEEEecCCCchhHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..-++|.|+.++|||||++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3468999999999999999885
No 454
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=72.66 E-value=1.8 Score=42.66 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.1
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999886
No 455
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=72.58 E-value=1.9 Score=43.23 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.2
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999875
No 456
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=72.44 E-value=1.7 Score=49.33 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.0
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
..++|.|+||+||||+++.++
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~ 188 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999986
No 457
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=71.95 E-value=1.9 Score=42.29 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=18.1
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 37899999999999999876
No 458
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=71.95 E-value=1.9 Score=42.10 Aligned_cols=20 Identities=35% Similarity=0.492 Sum_probs=18.3
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999999985
No 459
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=71.92 E-value=3.2 Score=44.38 Aligned_cols=44 Identities=25% Similarity=0.327 Sum_probs=36.7
Q ss_pred ccccceEEEecCCCCceEeEEEEeeeCCCCeEEEEc-cCCchhhhcc
Q 001187 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDL 149 (1129)
Q Consensus 104 ~~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddgd~e~l~l 149 (1129)
.-+|.-|-+.|. |+.||.|.|++.+.. +...|.| |-|..|.+.+
T Consensus 66 ~~~G~~c~a~~~-d~~wyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~ 110 (246)
T 2hqx_A 66 PRRGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPS 110 (246)
T ss_dssp CCTTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECG
T ss_pred CCCCCEEEEEcC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCeEEEeH
Confidence 348999999999 999999999999764 4788888 7799887753
No 460
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=71.79 E-value=1.9 Score=42.04 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=17.5
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|+.++|||||++.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 461
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=71.34 E-value=2 Score=41.65 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=17.7
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|+.++|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999986
No 462
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=71.33 E-value=2.3 Score=44.02 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
...++|+|+.|+||||++..++-.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999887643
No 463
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=71.13 E-value=2.1 Score=42.08 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=17.5
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|+.++|||||++.+.
T Consensus 17 i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999876
No 464
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.96 E-value=2 Score=44.27 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=18.8
Q ss_pred ceEEEEecCCCchhHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.-++|.|+.|+|||||++.++
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999876
No 465
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=70.95 E-value=2.1 Score=42.48 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=18.2
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999976
No 466
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=70.91 E-value=2.1 Score=49.40 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=24.2
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCC
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI 1064 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~ 1064 (1129)
.+++|+||.|+||||+.+.++-.. -|-+|.+++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~----~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF----NGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH----TEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHC----CCeEeecCc
Confidence 578999999999999988876322 123556655
No 467
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=70.88 E-value=2.2 Score=48.26 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.4
Q ss_pred EEEEecCCCchhHHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
++|.|+..|||||++||+=++
T Consensus 8 lLLLG~geSGKSTi~KQmkii 28 (340)
T 4fid_A 8 VMLLGSGESGKSTIAKQLKIL 28 (340)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 678999999999999997544
No 468
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=70.86 E-value=2.1 Score=41.70 Aligned_cols=19 Identities=42% Similarity=0.445 Sum_probs=17.5
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|+.++|||||++.++
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 7899999999999999875
No 469
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=70.76 E-value=2.2 Score=42.07 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=18.5
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
-++|.|+.++|||||++.+.-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998763
No 470
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.71 E-value=2.2 Score=53.38 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=0.0
Q ss_pred EEEEecCCCchhHHHHHHHHHHHHhHcCCeecCCCcccchhhhhhhccCccchHhhcccchHHHHHHHHHHHHhCCCCcE
Q 001187 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSL 1109 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l~vilAQiG~~VPA~~a~l~~~d~i~trig~~d~i~~g~StF~~em~e~~~il~~at~~sL 1109 (1129)
++|+||.|.|||++.|.++-.. .|.-.|.-...++-+-..+.-. -..+...++.. +.++
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l----~~~~~~~i~i~~s~~~~~~~~~----------------~~~l~~~~~~~-~~~v 582 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESI----FGDEESMIRIDMSEYMEKHSTS----------------GGQLTEKVRRK-PYSV 582 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH----HSCTTCEEEEEGGGGCSSCCCC-------------------CHHHHHHC-SSSE
T ss_pred EEEECCCCCCHHHHHHHHHHHh----cCCCcceEEEechhcccccccc----------------cchhhHHHHhC-CCeE
Q ss_pred EEEeCCCC
Q 001187 1110 VVLDELGR 1117 (1129)
Q Consensus 1110 vllDElGR 1117 (1129)
|+|||+++
T Consensus 583 l~lDEi~~ 590 (758)
T 3pxi_A 583 VLLDAIEK 590 (758)
T ss_dssp EEEECGGG
T ss_pred EEEeCccc
No 471
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=70.68 E-value=2.1 Score=42.05 Aligned_cols=20 Identities=35% Similarity=0.340 Sum_probs=18.3
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999986
No 472
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=70.48 E-value=2.2 Score=42.46 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=18.0
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999875
No 473
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=70.34 E-value=2.1 Score=43.10 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.6
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999998765
No 474
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=70.19 E-value=2.1 Score=42.18 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=18.1
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999875
No 475
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=69.92 E-value=2.2 Score=42.39 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=17.8
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|+.++|||||++.+.
T Consensus 7 i~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999886
No 476
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=69.91 E-value=2.3 Score=42.58 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.9
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999876
No 477
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=69.91 E-value=2.2 Score=42.47 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=18.1
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999876
No 478
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=69.83 E-value=2.3 Score=41.32 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.0
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999876
No 479
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=69.61 E-value=2.8 Score=42.85 Aligned_cols=21 Identities=33% Similarity=0.283 Sum_probs=17.8
Q ss_pred CceEEEEecCCCchhHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQV 1047 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i 1047 (1129)
++.++|+|+.|+||||+.-.+
T Consensus 16 G~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHH
Confidence 467999999999999986554
No 480
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=69.56 E-value=2.3 Score=42.64 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=18.2
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.++
T Consensus 23 ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47899999999999999986
No 481
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=69.53 E-value=4.5 Score=37.47 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=30.7
Q ss_pred cccceEEEecCCCCceEeEEEEeeeCCCC--eEEEEccCCc
Q 001187 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECN--KHLVQYDDGE 143 (1129)
Q Consensus 105 ~vg~rv~v~Wp~d~~~y~g~v~~~~~~~~--~h~v~Yddgd 143 (1129)
-+|.+|-+|| +..||++.|.+.....+ .+.|.|.+=.
T Consensus 24 ~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~GwN 62 (102)
T 2f5k_A 24 QEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGWN 62 (102)
T ss_dssp CTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTSC
T ss_pred CCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC
Confidence 4899999999 68999999998875443 7999998644
No 482
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=69.37 E-value=6.1 Score=46.07 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=25.2
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHhHc-CCee
Q 001187 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQV-GADV 1060 (1129)
Q Consensus 1026 ~~~~~iitGpN~~GKSt~lr~i~l~vilAQi-G~~V 1060 (1129)
..++++|+|++|+||||+.-.+| ..+++- |.-|
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA--~~l~~~~G~kV 132 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG--KFLREKHKKKV 132 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH--HHHHHTSCCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHH--HHHHHhcCCeE
Confidence 35788999999999999977666 556666 7433
No 483
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=69.09 E-value=2.3 Score=42.76 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=18.1
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 37899999999999999876
No 484
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=68.73 E-value=2.4 Score=41.81 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=18.0
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999876
No 485
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=68.55 E-value=2.5 Score=41.63 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.5
Q ss_pred eEEEEecCCCchhHHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l 1049 (1129)
-++|.|+.++|||||++.+.-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 378999999999999998763
No 486
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=68.48 E-value=2.5 Score=40.94 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=18.1
Q ss_pred EEEEecCCCchhHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l 1049 (1129)
++|.|+.++|||||++.+.-
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999863
No 487
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=68.38 E-value=7.1 Score=35.34 Aligned_cols=38 Identities=16% Similarity=0.025 Sum_probs=31.2
Q ss_pred cceEEEecCCCCceEeEEEEeeeCCC-----CeEEEEccCCchh
Q 001187 107 RKRIRVYWPLDKAWYEGCVKSFDKEC-----NKHLVQYDDGEDE 145 (1129)
Q Consensus 107 g~rv~v~Wp~d~~~y~g~v~~~~~~~-----~~h~v~Yddgd~e 145 (1129)
|.+|-|+|+ |..||+++|..-.... ..+.|.|.+-...
T Consensus 18 ~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkR 60 (92)
T 2bud_A 18 DKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRR 60 (92)
T ss_dssp TSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTT
T ss_pred CCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccc
Confidence 889999996 7899999999876543 4899999877743
No 488
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=68.18 E-value=2.9 Score=43.35 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=20.3
Q ss_pred CceEEEEecCCCchhHHHHHHHHH
Q 001187 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1027 ~~~~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
...++|+|+.|+||||++..++-.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356889999999999999988743
No 489
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=68.15 E-value=2.6 Score=41.90 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=18.1
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999876
No 490
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=67.92 E-value=2.6 Score=42.84 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=18.1
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47899999999999999875
No 491
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=67.86 E-value=2.6 Score=42.22 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=18.2
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~ 28 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLT 28 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999876
No 492
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=67.50 E-value=2.7 Score=42.22 Aligned_cols=20 Identities=40% Similarity=0.439 Sum_probs=18.1
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999876
No 493
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=67.44 E-value=2.7 Score=42.61 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=18.1
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999876
No 494
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=67.41 E-value=2.8 Score=41.54 Aligned_cols=20 Identities=35% Similarity=0.280 Sum_probs=18.2
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47899999999999999876
No 495
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=67.37 E-value=2.8 Score=42.35 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=18.2
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
-++|.|+.++|||||++.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 37899999999999999986
No 496
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=67.30 E-value=2.8 Score=47.65 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.0
Q ss_pred EEEEecCCCchhHHHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~l~ 1050 (1129)
++|.|+..|||||++||+=++
T Consensus 35 lLlLG~geSGKST~~KQmkii 55 (353)
T 1cip_A 35 LLLLGAGESGKSTIVKQMKII 55 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCchhHHHHHHHh
Confidence 789999999999999998754
No 497
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=67.22 E-value=2.7 Score=47.59 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=19.1
Q ss_pred eEEEEecCCCchhHHHHHHH
Q 001187 1029 FILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~ 1048 (1129)
.++|.|++++||||+|+.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~ 55 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIV 55 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999998
No 498
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=67.16 E-value=2.8 Score=41.56 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=17.5
Q ss_pred EEEEecCCCchhHHHHHHH
Q 001187 1030 ILLTGPNMGGKSTLLRQVC 1048 (1129)
Q Consensus 1030 ~iitGpN~~GKSt~lr~i~ 1048 (1129)
++|.|+.++|||||++.+.
T Consensus 8 i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998875
No 499
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=67.10 E-value=2.9 Score=43.25 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=24.1
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHhHcCCee
Q 001187 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1129)
Q Consensus 1029 ~~iitGpN~~GKSt~lr~i~l~vilAQiG~~V 1060 (1129)
+++|-|+-|+||||.++.++ -.|.+.|..|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~--~~L~~~g~~v 31 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLA--QYLEKRGKKV 31 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH--HHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHH--HHHHHCCCcE
Confidence 67899999999999999876 4566667654
No 500
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=67.01 E-value=2.5 Score=48.68 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=19.5
Q ss_pred ceEEEEecCCCchhHHHHHHHH
Q 001187 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1129)
Q Consensus 1028 ~~~iitGpN~~GKSt~lr~i~l 1049 (1129)
..++|.|+|++|||||++.++-
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg 44 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTN 44 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3489999999999999999874
Done!