Query 001189
Match_columns 1128
No_of_seqs 754 out of 4770
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 18:15:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 3E-179 7E-184 1674.8 104.5 954 19-979 415-1374(1381)
2 PLN03130 ABC transporter C fam 100.0 5E-173 1E-177 1711.5 124.6 1107 21-1128 516-1622(1622)
3 PLN03232 ABC transporter C fam 100.0 3E-152 7E-157 1513.5 119.3 966 22-991 517-1482(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 7E-142 2E-146 1416.4 119.4 950 22-980 534-1520(1522)
5 PTZ00243 ABC transporter; Prov 100.0 3E-137 6E-142 1368.2 115.6 961 21-986 462-1552(1560)
6 TIGR01271 CFTR_protein cystic 100.0 7E-137 1E-141 1364.4 115.6 952 22-986 298-1458(1490)
7 KOG0055 Multidrug/pheromone ex 100.0 2E-133 4E-138 1231.2 91.2 917 40-980 268-1225(1228)
8 PTZ00265 multidrug resistance 100.0 4E-118 9E-123 1175.3 111.7 929 42-979 296-1464(1466)
9 KOG0058 Peptide exporter, ABC 100.0 5.5E-82 1.2E-86 738.7 62.5 545 425-980 151-704 (716)
10 COG2274 SunT ABC-type bacterio 100.0 7.2E-76 1.6E-80 717.2 68.3 543 422-979 155-707 (709)
11 PRK11174 cysteine/glutathione 100.0 8.8E-72 1.9E-76 690.1 71.5 548 426-979 27-583 (588)
12 COG1132 MdlB ABC-type multidru 100.0 1.2E-71 2.6E-76 685.3 68.8 539 429-981 22-565 (567)
13 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.6E-70 1.2E-74 684.4 72.7 540 424-978 139-683 (686)
14 TIGR00958 3a01208 Conjugate Tr 100.0 4.4E-70 9.6E-75 684.9 69.6 541 423-976 163-710 (711)
15 PRK10790 putative multidrug tr 100.0 2.4E-69 5.1E-74 668.6 73.4 543 424-979 26-574 (592)
16 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.7E-69 3.8E-74 682.9 69.6 542 426-977 159-709 (710)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 2.6E-69 5.7E-74 680.6 70.6 541 425-978 160-707 (708)
18 PRK11160 cysteine/glutathione 100.0 6.9E-69 1.5E-73 659.9 70.4 496 467-978 68-572 (574)
19 COG4987 CydC ABC-type transpor 100.0 3.4E-69 7.3E-74 610.0 60.6 499 470-978 69-571 (573)
20 PRK11176 lipid transporter ATP 100.0 1.1E-68 2.5E-73 661.9 71.3 502 466-979 72-578 (582)
21 COG1123 ATPase components of v 100.0 7.9E-71 1.7E-75 638.6 45.5 464 119-978 5-530 (539)
22 COG4988 CydD ABC-type transpor 100.0 1.5E-68 3.2E-73 616.1 63.9 510 461-980 42-555 (559)
23 TIGR03375 type_I_sec_LssB type 100.0 2.1E-68 4.6E-73 671.0 71.0 531 426-968 152-689 (694)
24 PRK10261 glutathione transport 100.0 1.2E-70 2.6E-75 679.1 49.6 482 118-974 11-560 (623)
25 KOG0055 Multidrug/pheromone ex 100.0 2E-70 4.3E-75 674.6 49.3 508 458-980 70-588 (1228)
26 TIGR01257 rim_protein retinal- 100.0 4.9E-68 1.1E-72 696.0 73.3 303 742-1082 1936-2254(2272)
27 TIGR02203 MsbA_lipidA lipid A 100.0 4E-67 8.7E-72 647.3 71.6 543 424-978 17-566 (571)
28 TIGR01846 type_I_sec_HlyB type 100.0 5.8E-67 1.3E-71 657.4 71.1 541 427-979 145-691 (694)
29 PRK15134 microcin C ABC transp 100.0 1.6E-69 3.4E-74 660.3 45.1 454 119-969 5-517 (529)
30 PRK13549 xylose transporter AT 100.0 7.6E-70 1.6E-74 659.6 41.8 443 119-965 5-492 (506)
31 PRK13657 cyclic beta-1,2-gluca 100.0 3.4E-66 7.5E-71 639.5 73.6 544 424-979 22-569 (588)
32 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-69 3.3E-74 659.5 42.9 439 120-967 1-517 (520)
33 PRK09700 D-allose transporter 100.0 2.3E-69 5E-74 656.4 41.8 441 119-963 5-494 (510)
34 KOG0057 Mitochondrial Fe/S clu 100.0 4.9E-67 1.1E-71 592.5 56.2 506 460-979 75-585 (591)
35 KOG0056 Heavy metal exporter H 100.0 4.4E-69 9.5E-74 593.0 38.4 495 473-979 273-773 (790)
36 TIGR02868 CydC thiol reductant 100.0 3.1E-66 6.7E-71 632.8 65.3 463 468-939 62-529 (529)
37 PRK15064 ABC transporter ATP-b 100.0 9.9E-68 2.1E-72 644.6 50.9 201 743-968 319-526 (530)
38 PRK10762 D-ribose transporter 100.0 1.5E-68 3.3E-73 647.4 42.8 436 119-965 4-482 (501)
39 PRK15439 autoinducer 2 ABC tra 100.0 3.2E-68 6.8E-73 645.1 45.1 450 118-966 10-491 (510)
40 TIGR02204 MsbA_rel ABC transpo 100.0 2.4E-65 5.1E-70 631.9 71.0 545 425-978 22-573 (576)
41 PRK11288 araG L-arabinose tran 100.0 1.5E-68 3.2E-73 647.6 41.2 440 118-966 3-484 (501)
42 PRK10789 putative multidrug tr 100.0 2E-65 4.3E-70 629.1 67.7 506 462-979 39-549 (569)
43 TIGR01192 chvA glucan exporter 100.0 7.1E-65 1.5E-69 625.1 72.6 544 423-979 21-569 (585)
44 TIGR02633 xylG D-xylose ABC tr 100.0 4.9E-68 1.1E-72 643.6 43.2 447 120-964 2-489 (500)
45 PRK10636 putative ABC transpor 100.0 4.2E-66 9.2E-71 638.9 56.7 200 743-967 312-517 (638)
46 TIGR02857 CydD thiol reductant 100.0 5.5E-65 1.2E-69 621.8 65.0 515 426-951 8-529 (529)
47 PRK11819 putative ABC transpor 100.0 6.1E-66 1.3E-70 630.9 52.9 201 742-968 323-534 (556)
48 PRK10982 galactose/methyl gala 100.0 4.5E-67 9.7E-72 633.5 41.5 435 122-964 1-477 (491)
49 PRK10938 putative molybdenum t 100.0 6.1E-67 1.3E-71 632.5 41.9 439 119-960 3-485 (490)
50 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2E-65 4.2E-70 626.5 52.7 478 119-967 4-531 (552)
51 PRK11147 ABC transporter ATPas 100.0 1.9E-64 4E-69 625.9 53.3 199 743-967 319-528 (635)
52 TIGR01842 type_I_sec_PrtD type 100.0 9.9E-63 2.2E-67 602.9 67.9 524 426-967 11-542 (544)
53 COG0488 Uup ATPase components 100.0 7.5E-65 1.6E-69 602.1 46.5 484 119-968 3-526 (530)
54 TIGR00956 3a01205 Pleiotropic 100.0 1.6E-64 3.5E-69 667.0 54.7 211 743-964 759-990 (1394)
55 PTZ00265 multidrug resistance 100.0 4.7E-63 1E-67 653.2 68.2 544 426-980 65-728 (1466)
56 COG4172 ABC-type uncharacteriz 100.0 6E-64 1.3E-68 545.2 41.7 454 118-976 5-525 (534)
57 COG5265 ATM1 ABC-type transpor 100.0 4.9E-63 1.1E-67 542.7 38.4 487 481-978 4-496 (497)
58 PLN03073 ABC transporter F fam 100.0 8.2E-62 1.8E-66 601.6 53.5 200 742-966 507-713 (718)
59 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.5E-60 5.5E-65 581.8 65.9 514 429-959 26-551 (555)
60 PLN03130 ABC transporter C fam 100.0 2.3E-58 4.9E-63 614.3 70.0 470 484-979 366-839 (1622)
61 PLN03232 ABC transporter C fam 100.0 2.6E-58 5.7E-63 614.2 69.5 471 484-979 366-839 (1495)
62 PLN03140 ABC transporter G fam 100.0 1.1E-58 2.4E-63 608.5 64.5 211 743-963 867-1106(1470)
63 PRK13409 putative ATPase RIL; 100.0 2.2E-60 4.7E-65 579.6 40.4 191 743-961 340-536 (590)
64 PRK10522 multidrug transporter 100.0 6E-57 1.3E-61 551.9 66.4 464 472-959 61-530 (547)
65 COG1129 MglA ABC-type sugar tr 100.0 5.8E-59 1.3E-63 536.7 39.9 444 118-961 7-484 (500)
66 KOG0058 Peptide exporter, ABC 100.0 3.2E-59 7E-64 547.4 33.4 305 40-345 385-704 (716)
67 COG4618 ArpD ABC-type protease 100.0 6.9E-57 1.5E-61 504.8 48.6 481 467-968 71-561 (580)
68 KOG0054 Multidrug resistance-a 100.0 2.4E-55 5.2E-60 554.5 63.0 494 461-977 244-740 (1381)
69 TIGR00957 MRP_assoc_pro multi 100.0 4E-54 8.6E-59 574.9 70.9 527 429-978 325-860 (1522)
70 COG2274 SunT ABC-type bacterio 100.0 3.8E-57 8.2E-62 552.8 37.7 300 42-343 392-706 (709)
71 COG3845 ABC-type uncharacteriz 100.0 9E-56 2E-60 498.3 37.1 441 118-964 3-489 (501)
72 TIGR00954 3a01203 Peroxysomal 100.0 6.7E-53 1.5E-57 523.2 57.0 509 423-952 98-652 (659)
73 COG4988 CydD ABC-type transpor 100.0 7.8E-55 1.7E-59 502.5 36.6 305 36-345 234-555 (559)
74 TIGR01271 CFTR_protein cystic 100.0 8.1E-52 1.8E-56 551.0 69.8 482 466-977 129-645 (1490)
75 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.6E-54 7.9E-59 541.3 41.7 297 43-343 375-683 (686)
76 PRK11174 cysteine/glutathione 100.0 4.9E-54 1.1E-58 531.9 40.0 280 61-344 289-583 (588)
77 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.6E-53 3.4E-58 537.9 39.6 296 43-342 393-709 (710)
78 TIGR00958 3a01208 Conjugate Tr 100.0 3.7E-53 8E-58 532.0 39.3 297 42-341 400-710 (711)
79 COG1132 MdlB ABC-type multidru 100.0 5.1E-53 1.1E-57 520.1 38.9 300 43-345 252-564 (567)
80 PRK11176 lipid transporter ATP 100.0 1E-52 2.2E-57 519.8 40.8 300 43-344 265-578 (582)
81 PTZ00243 ABC transporter; Prov 100.0 3.9E-50 8.5E-55 534.9 68.1 488 469-978 295-879 (1560)
82 TIGR01193 bacteriocin_ABC ABC- 100.0 7.5E-53 1.6E-57 531.2 39.4 298 42-343 394-707 (708)
83 KOG0057 Mitochondrial Fe/S clu 100.0 9.6E-53 2.1E-57 476.5 35.1 297 44-344 276-585 (591)
84 TIGR03375 type_I_sec_LssB type 100.0 2.6E-52 5.6E-57 525.2 39.6 290 43-334 385-689 (694)
85 PRK10790 putative multidrug tr 100.0 4.2E-52 9.1E-57 514.8 40.4 290 52-345 274-575 (592)
86 TIGR02203 MsbA_lipidA lipid A 100.0 2.2E-51 4.8E-56 507.2 41.4 299 43-343 254-566 (571)
87 PRK11160 cysteine/glutathione 100.0 1.5E-50 3.3E-55 497.5 41.3 296 44-343 262-572 (574)
88 KOG0056 Heavy metal exporter H 100.0 2.7E-52 5.8E-57 460.4 22.7 296 47-345 463-774 (790)
89 COG4987 CydC ABC-type transpor 100.0 1.7E-51 3.6E-56 466.3 29.3 286 54-342 270-570 (573)
90 PRK13657 cyclic beta-1,2-gluca 100.0 1.4E-50 3E-55 500.6 40.3 300 42-344 255-569 (588)
91 PRK10789 putative multidrug tr 100.0 3.2E-50 7E-55 494.4 40.3 300 43-344 237-549 (569)
92 TIGR02204 MsbA_rel ABC transpo 100.0 3.5E-50 7.6E-55 496.8 40.2 301 42-343 257-573 (576)
93 TIGR01846 type_I_sec_HlyB type 100.0 6.2E-50 1.3E-54 503.3 41.7 299 43-343 378-690 (694)
94 COG4618 ArpD ABC-type protease 100.0 1.1E-50 2.4E-55 454.9 30.6 291 42-334 258-561 (580)
95 KOG0927 Predicted transporter 100.0 8.7E-51 1.9E-55 458.2 27.4 199 743-965 389-594 (614)
96 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.8E-50 3.8E-55 449.1 29.2 242 742-985 1-242 (275)
97 TIGR01842 type_I_sec_PrtD type 100.0 1.7E-49 3.6E-54 486.2 39.9 289 43-333 241-542 (544)
98 TIGR02868 CydC thiol reductant 100.0 4.6E-49 1E-53 481.5 37.4 260 43-305 254-529 (529)
99 TIGR01192 chvA glucan exporter 100.0 1.3E-48 2.8E-53 481.1 40.6 300 42-344 255-569 (585)
100 TIGR02857 CydD thiol reductant 100.0 3.6E-48 7.9E-53 473.6 36.3 270 46-317 247-529 (529)
101 COG1126 GlnQ ABC-type polar am 100.0 5.3E-49 1.2E-53 400.6 22.5 215 743-970 2-228 (240)
102 COG5265 ATM1 ABC-type transpor 100.0 4.3E-48 9.3E-53 425.1 26.7 296 45-343 185-496 (497)
103 KOG0062 ATPase component of AB 100.0 1.1E-47 2.5E-52 430.9 29.0 195 742-959 361-560 (582)
104 PRK14257 phosphate ABC transpo 100.0 1.2E-46 2.6E-51 429.0 28.3 228 736-970 73-316 (329)
105 COG1135 AbcC ABC-type metal io 100.0 3.2E-47 6.9E-52 406.4 21.6 219 744-973 2-237 (339)
106 COG1125 OpuBA ABC-type proline 100.0 3.2E-47 6.9E-52 394.2 19.2 218 744-974 2-232 (309)
107 COG1117 PstB ABC-type phosphat 100.0 1.1E-45 2.4E-50 374.1 18.9 219 743-970 7-240 (253)
108 cd03288 ABCC_SUR2 The SUR doma 100.0 1.9E-44 4.1E-49 399.8 29.2 237 741-977 17-253 (257)
109 COG1127 Ttg2A ABC-type transpo 100.0 9.2E-45 2E-49 375.2 22.3 219 743-974 8-242 (263)
110 cd03252 ABCC_Hemolysin The ABC 100.0 3.9E-44 8.4E-49 392.9 28.3 231 744-975 1-232 (237)
111 TIGR01194 cyc_pep_trnsptr cycl 100.0 9.2E-44 2E-48 435.7 34.2 264 55-325 263-551 (555)
112 COG1126 GlnQ ABC-type polar am 100.0 4.7E-45 1E-49 371.8 18.5 203 119-335 2-227 (240)
113 cd03244 ABCC_MRP_domain2 Domai 100.0 4.9E-44 1.1E-48 387.9 26.9 221 742-962 1-221 (221)
114 COG1120 FepC ABC-type cobalami 100.0 1.6E-44 3.5E-49 387.8 22.5 213 743-968 2-229 (258)
115 cd03254 ABCC_Glucan_exporter_l 100.0 3.6E-43 7.7E-48 383.3 27.0 226 742-968 1-227 (229)
116 cd03251 ABCC_MsbA MsbA is an e 100.0 4.3E-43 9.3E-48 384.0 27.1 226 744-969 1-227 (234)
117 PRK14257 phosphate ABC transpo 100.0 1.1E-43 2.3E-48 404.8 23.0 266 54-335 22-315 (329)
118 COG3839 MalK ABC-type sugar tr 100.0 1.6E-43 3.5E-48 394.2 22.8 217 743-974 3-230 (338)
119 KOG0065 Pleiotropic drug resis 100.0 1.3E-42 2.9E-47 427.5 33.1 199 756-964 802-1018(1391)
120 TIGR02314 ABC_MetN D-methionin 100.0 1.9E-43 4.2E-48 403.2 23.9 219 744-973 2-236 (343)
121 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2E-43 4.4E-48 377.2 22.1 209 743-968 4-228 (254)
122 PRK10522 multidrug transporter 100.0 4.9E-42 1.1E-46 420.4 34.0 246 69-325 272-530 (547)
123 cd03245 ABCC_bacteriocin_expor 100.0 1.5E-42 3.3E-47 376.0 26.1 219 742-960 1-220 (220)
124 cd03253 ABCC_ATM1_transporter 100.0 2.4E-42 5.2E-47 378.5 27.8 224 744-968 1-225 (236)
125 COG1122 CbiO ABC-type cobalt t 100.0 4.7E-43 1E-47 377.1 21.4 215 743-969 3-230 (235)
126 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.8E-42 3.8E-47 371.9 25.8 207 738-962 1-207 (207)
127 COG1124 DppF ABC-type dipeptid 100.0 1E-42 2.2E-47 362.3 22.1 221 743-974 3-238 (252)
128 COG3842 PotA ABC-type spermidi 100.0 4.2E-43 9.2E-48 392.8 20.5 217 743-974 5-233 (352)
129 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.9E-42 6.3E-47 378.3 26.4 225 744-968 1-227 (238)
130 COG2884 FtsE Predicted ATPase 100.0 4E-43 8.7E-48 349.4 17.3 206 744-961 2-220 (223)
131 COG1116 TauB ABC-type nitrate/ 100.0 1E-42 2.2E-47 366.3 20.7 197 743-957 3-212 (248)
132 cd03261 ABC_Org_Solvent_Resist 100.0 1.6E-42 3.4E-47 379.6 22.8 212 744-968 1-227 (235)
133 COG3638 ABC-type phosphate/pho 100.0 1.5E-42 3.2E-47 358.0 20.4 212 743-966 3-236 (258)
134 COG1136 SalX ABC-type antimicr 100.0 5.1E-42 1.1E-46 361.6 23.7 204 744-957 2-221 (226)
135 cd03260 ABC_PstB_phosphate_tra 100.0 2.8E-42 6E-47 375.8 22.2 211 744-965 1-227 (227)
136 COG4555 NatA ABC-type Na+ tran 100.0 6.6E-43 1.4E-47 350.4 15.4 213 744-969 2-224 (245)
137 PRK13631 cbiO cobalt transport 100.0 8E-42 1.7E-46 388.3 26.3 220 742-968 20-266 (320)
138 PRK11650 ugpC glycerol-3-phosp 100.0 6.2E-42 1.4E-46 394.0 25.7 217 743-973 3-230 (356)
139 PRK14250 phosphate ABC transpo 100.0 1.1E-41 2.4E-46 374.2 25.9 215 743-970 3-224 (241)
140 cd03289 ABCC_CFTR2 The CFTR su 100.0 1E-41 2.3E-46 378.9 25.8 225 119-346 2-238 (275)
141 COG3840 ThiQ ABC-type thiamine 100.0 4.7E-42 1E-46 338.6 20.1 210 744-970 2-222 (231)
142 PRK13537 nodulation ABC transp 100.0 3.8E-42 8.2E-47 389.5 22.5 212 743-968 7-228 (306)
143 PRK11432 fbpC ferric transport 100.0 7E-42 1.5E-46 392.5 24.4 216 743-973 6-232 (351)
144 PRK11153 metN DL-methionine tr 100.0 8.5E-42 1.8E-46 392.5 23.8 216 744-970 2-233 (343)
145 TIGR03265 PhnT2 putative 2-ami 100.0 8E-42 1.7E-46 392.7 23.1 216 743-973 4-230 (353)
146 PRK13650 cbiO cobalt transport 100.0 1.3E-41 2.9E-46 381.0 23.8 215 743-968 4-230 (279)
147 COG1135 AbcC ABC-type metal io 100.0 3.7E-42 8E-47 367.6 18.0 206 119-335 1-233 (339)
148 COG1137 YhbG ABC-type (unclass 100.0 7.7E-43 1.7E-47 349.6 11.9 223 743-969 4-230 (243)
149 PRK14269 phosphate ABC transpo 100.0 2.4E-41 5.1E-46 372.8 25.0 217 744-969 3-232 (246)
150 PRK13637 cbiO cobalt transport 100.0 1.3E-41 2.9E-46 382.4 23.2 216 744-968 3-235 (287)
151 PRK13647 cbiO cobalt transport 100.0 1.5E-41 3.3E-46 379.6 23.5 212 743-966 4-226 (274)
152 COG1118 CysA ABC-type sulfate/ 100.0 5.4E-42 1.2E-46 365.2 18.6 217 743-974 2-234 (345)
153 cd03248 ABCC_TAP TAP, the Tran 100.0 2.6E-41 5.7E-46 367.8 24.1 216 741-956 9-226 (226)
154 cd03296 ABC_CysA_sulfate_impor 100.0 3.1E-41 6.6E-46 370.4 24.8 211 744-969 3-228 (239)
155 COG1131 CcmA ABC-type multidru 100.0 1.3E-41 2.9E-46 381.5 22.0 213 743-968 4-227 (293)
156 TIGR00960 3a0501s02 Type II (G 100.0 1E-41 2.2E-46 368.5 20.2 202 744-956 2-216 (216)
157 cd03263 ABC_subfamily_A The AB 100.0 1.9E-41 4.1E-46 367.4 22.3 210 744-965 1-219 (220)
158 TIGR03258 PhnT 2-aminoethylpho 100.0 1.6E-41 3.5E-46 390.6 22.9 217 742-973 4-234 (362)
159 cd03219 ABC_Mj1267_LivG_branch 100.0 1.8E-41 3.8E-46 371.7 22.0 221 744-968 1-233 (236)
160 cd03256 ABC_PhnC_transporter A 100.0 2.2E-41 4.7E-46 372.2 22.7 211 744-966 1-233 (241)
161 TIGR01186 proV glycine betaine 100.0 1.2E-41 2.7E-46 390.4 21.5 206 758-974 6-226 (363)
162 PRK10851 sulfate/thiosulfate t 100.0 3.5E-41 7.5E-46 387.4 25.2 216 743-973 2-232 (353)
163 PRK09536 btuD corrinoid ABC tr 100.0 2.4E-41 5.3E-46 392.4 24.0 213 743-968 3-229 (402)
164 PRK13635 cbiO cobalt transport 100.0 3.3E-41 7.1E-46 377.7 24.2 215 743-968 5-230 (279)
165 TIGR00972 3a0107s01c2 phosphat 100.0 4.2E-41 9.1E-46 371.1 24.6 217 744-969 2-234 (247)
166 PRK13643 cbiO cobalt transport 100.0 3E-41 6.6E-46 379.7 23.7 215 744-968 2-234 (288)
167 cd03259 ABC_Carb_Solutes_like 100.0 1.9E-41 4.2E-46 365.5 21.0 202 744-960 1-213 (213)
168 KOG0066 eIF2-interacting prote 100.0 2.2E-40 4.7E-45 361.3 28.5 199 743-965 586-789 (807)
169 cd03258 ABC_MetN_methionine_tr 100.0 3.8E-41 8.2E-46 368.3 22.8 213 744-967 2-230 (233)
170 TIGR02315 ABC_phnC phosphonate 100.0 4E-41 8.7E-46 370.6 23.2 211 744-966 2-234 (243)
171 PRK14242 phosphate transporter 100.0 6.3E-41 1.4E-45 371.2 24.7 218 743-969 6-239 (253)
172 COG4615 PvdE ABC-type sideroph 100.0 2.1E-38 4.5E-43 344.5 43.5 467 465-959 54-529 (546)
173 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.9E-41 1.1E-45 369.4 23.6 218 744-969 1-227 (242)
174 PRK09452 potA putrescine/sperm 100.0 5.2E-41 1.1E-45 387.7 24.9 216 743-973 14-240 (375)
175 cd03224 ABC_TM1139_LivF_branch 100.0 3.8E-41 8.2E-46 365.6 22.4 216 744-967 1-221 (222)
176 PRK13536 nodulation factor exp 100.0 3.2E-41 6.8E-46 385.9 22.7 216 743-968 41-262 (340)
177 PRK10744 pstB phosphate transp 100.0 1.1E-40 2.4E-45 370.4 26.3 220 741-969 11-246 (260)
178 PRK14273 phosphate ABC transpo 100.0 9E-41 2E-45 370.1 25.3 219 743-970 7-241 (254)
179 PRK11000 maltose/maltodextrin 100.0 4.5E-41 9.8E-46 389.5 23.8 215 743-972 3-228 (369)
180 PRK13646 cbiO cobalt transport 100.0 4.4E-41 9.5E-46 378.2 23.0 218 744-968 3-236 (286)
181 TIGR00954 3a01203 Peroxysomal 100.0 1.1E-39 2.4E-44 405.1 37.2 258 55-319 358-653 (659)
182 cd03265 ABC_DrrA DrrA is the A 100.0 6.7E-41 1.5E-45 363.1 22.9 208 744-965 1-219 (220)
183 PRK13636 cbiO cobalt transport 100.0 8.1E-41 1.8E-45 375.5 23.9 214 743-968 5-232 (283)
184 PRK13634 cbiO cobalt transport 100.0 6.8E-41 1.5E-45 377.2 23.3 214 744-968 3-236 (290)
185 PRK14259 phosphate ABC transpo 100.0 1.8E-40 3.9E-45 370.1 26.4 220 741-969 11-255 (269)
186 PRK14247 phosphate ABC transpo 100.0 1.2E-40 2.6E-45 368.3 24.6 218 743-969 3-236 (250)
187 PRK14235 phosphate transporter 100.0 1.5E-40 3.3E-45 370.5 25.6 220 741-969 17-253 (267)
188 TIGR03522 GldA_ABC_ATP gliding 100.0 8.3E-41 1.8E-45 378.5 23.7 215 744-968 3-222 (301)
189 PRK13651 cobalt transporter AT 100.0 8.7E-41 1.9E-45 377.7 23.7 215 744-968 3-255 (305)
190 COG1116 TauB ABC-type nitrate/ 100.0 4E-41 8.6E-46 354.3 19.4 191 119-323 3-212 (248)
191 COG1125 OpuBA ABC-type proline 100.0 2E-41 4.4E-46 351.1 16.6 203 119-335 1-227 (309)
192 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.7E-41 1E-45 363.8 20.3 206 744-956 1-218 (218)
193 TIGR01288 nodI ATP-binding ABC 100.0 8.7E-41 1.9E-45 378.9 23.3 216 743-968 4-225 (303)
194 PRK13652 cbiO cobalt transport 100.0 1.3E-40 2.8E-45 372.9 24.3 213 744-968 4-228 (277)
195 PRK14267 phosphate ABC transpo 100.0 1.3E-40 2.9E-45 368.6 24.0 218 743-969 4-239 (253)
196 PRK11629 lolD lipoprotein tran 100.0 9.7E-41 2.1E-45 365.0 22.4 208 743-961 5-228 (233)
197 cd03226 ABC_cobalt_CbiO_domain 100.0 7.4E-41 1.6E-45 358.7 21.1 198 745-957 1-205 (205)
198 cd03268 ABC_BcrA_bacitracin_re 100.0 9.8E-41 2.1E-45 358.6 22.0 202 744-960 1-208 (208)
199 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.5E-40 3.3E-45 355.2 23.0 203 118-335 3-229 (254)
200 cd03294 ABC_Pro_Gly_Bertaine T 100.0 7.4E-41 1.6E-45 373.2 21.6 213 745-970 26-253 (269)
201 PRK15079 oligopeptide ABC tran 100.0 1.7E-40 3.6E-45 378.9 24.9 223 743-975 8-259 (331)
202 cd03218 ABC_YhbG The ABC trans 100.0 1.1E-40 2.3E-45 364.6 22.2 215 744-967 1-222 (232)
203 PRK13632 cbiO cobalt transport 100.0 2.1E-40 4.6E-45 370.1 25.1 215 743-968 7-232 (271)
204 COG0410 LivF ABC-type branched 100.0 1.5E-40 3.3E-45 343.9 22.1 220 743-969 3-228 (237)
205 cd03264 ABC_drug_resistance_li 100.0 8.9E-41 1.9E-45 359.8 21.2 202 744-960 1-211 (211)
206 PRK13644 cbiO cobalt transport 100.0 1.8E-40 3.8E-45 371.0 24.4 213 744-968 2-225 (274)
207 TIGR03411 urea_trans_UrtD urea 100.0 1.4E-40 3.1E-45 365.9 23.2 220 744-967 3-231 (242)
208 cd03266 ABC_NatA_sodium_export 100.0 9.9E-41 2.1E-45 361.3 21.6 205 744-960 2-218 (218)
209 cd03250 ABCC_MRP_domain1 Domai 100.0 2E-40 4.4E-45 355.1 23.6 199 744-955 1-204 (204)
210 PRK10575 iron-hydroxamate tran 100.0 1.5E-40 3.2E-45 370.4 23.3 212 743-967 11-237 (265)
211 PRK10070 glycine betaine trans 100.0 1.6E-40 3.5E-45 385.3 24.5 220 743-973 4-260 (400)
212 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.7E-40 3.8E-45 363.7 23.4 215 744-968 2-222 (236)
213 PRK13640 cbiO cobalt transport 100.0 1.9E-40 4.1E-45 372.4 24.1 216 742-968 4-233 (282)
214 TIGR03005 ectoine_ehuA ectoine 100.0 2.2E-40 4.8E-45 366.5 24.1 213 744-969 1-238 (252)
215 PRK11831 putative ABC transpor 100.0 1.7E-40 3.8E-45 370.4 23.5 213 743-968 7-234 (269)
216 PRK11607 potG putrescine trans 100.0 1.6E-40 3.4E-45 384.5 23.7 218 742-974 18-246 (377)
217 PRK14274 phosphate ABC transpo 100.0 3.4E-40 7.3E-45 366.4 25.3 219 743-970 12-246 (259)
218 cd03301 ABC_MalK_N The N-termi 100.0 1.2E-40 2.6E-45 359.4 20.9 202 744-960 1-213 (213)
219 PRK09493 glnQ glutamine ABC tr 100.0 2.2E-40 4.8E-45 363.9 23.4 217 744-969 2-227 (240)
220 cd03247 ABCC_cytochrome_bd The 100.0 2.1E-40 4.6E-45 347.0 22.0 178 744-960 1-178 (178)
221 PRK14268 phosphate ABC transpo 100.0 2.4E-40 5.2E-45 367.3 23.7 218 743-969 12-244 (258)
222 PRK14240 phosphate transporter 100.0 3.8E-40 8.3E-45 364.2 25.0 219 742-969 2-236 (250)
223 PRK10619 histidine/lysine/argi 100.0 3.3E-40 7.2E-45 366.1 24.2 215 742-969 4-243 (257)
224 PRK11231 fecE iron-dicitrate t 100.0 2.5E-40 5.5E-45 366.6 23.1 211 744-967 3-227 (255)
225 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.4E-40 3E-45 360.6 20.5 204 744-963 1-219 (220)
226 PRK11308 dppF dipeptide transp 100.0 4.3E-40 9.4E-45 375.3 25.5 223 743-975 5-252 (327)
227 PRK11614 livF leucine/isoleuci 100.0 4.1E-40 8.9E-45 361.1 24.3 217 743-967 5-226 (237)
228 cd03225 ABC_cobalt_CbiO_domain 100.0 1.4E-40 3E-45 358.3 20.2 200 745-955 1-211 (211)
229 PRK13641 cbiO cobalt transport 100.0 2.8E-40 6.1E-45 371.9 23.6 217 744-967 3-234 (287)
230 PRK10895 lipopolysaccharide AB 100.0 3.2E-40 6.9E-45 362.9 23.4 215 744-967 4-226 (241)
231 PRK11264 putative amino-acid A 100.0 7.6E-40 1.6E-44 361.9 26.6 217 744-969 4-235 (250)
232 PRK10253 iron-enterobactin tra 100.0 2.8E-40 6.2E-45 368.0 23.3 213 742-967 6-233 (265)
233 PRK13642 cbiO cobalt transport 100.0 3.7E-40 8.1E-45 369.2 24.3 215 743-968 4-230 (277)
234 PRK14245 phosphate ABC transpo 100.0 3.1E-40 6.7E-45 364.9 23.4 218 743-969 3-236 (250)
235 PRK14239 phosphate transporter 100.0 4.1E-40 8.9E-45 364.5 24.4 218 743-969 5-238 (252)
236 PRK13548 hmuV hemin importer A 100.0 5.5E-40 1.2E-44 364.1 25.4 211 744-967 3-230 (258)
237 TIGR02211 LolD_lipo_ex lipopro 100.0 3.6E-40 7.8E-45 357.7 23.3 207 744-957 2-220 (221)
238 PRK13633 cobalt transporter AT 100.0 3.9E-40 8.4E-45 369.6 24.4 215 743-968 4-234 (280)
239 PRK14248 phosphate ABC transpo 100.0 5.7E-40 1.2E-44 366.3 25.5 218 743-969 21-254 (268)
240 PRK13648 cbiO cobalt transport 100.0 3.1E-40 6.7E-45 368.6 23.2 215 743-968 7-232 (269)
241 COG1120 FepC ABC-type cobalami 100.0 2E-40 4.4E-45 356.2 20.8 203 119-335 2-230 (258)
242 PRK14237 phosphate transporter 100.0 6.2E-40 1.3E-44 365.6 25.5 218 743-969 20-253 (267)
243 PRK14251 phosphate ABC transpo 100.0 3.9E-40 8.4E-45 364.4 23.6 219 743-970 4-238 (251)
244 TIGR03410 urea_trans_UrtE urea 100.0 5.1E-40 1.1E-44 358.7 24.1 210 744-965 1-219 (230)
245 TIGR02673 FtsE cell division A 100.0 1.8E-40 4E-45 358.1 20.2 200 744-955 2-214 (214)
246 PRK11124 artP arginine transpo 100.0 4.2E-40 9E-45 362.2 23.4 215 744-967 3-230 (242)
247 PRK14256 phosphate ABC transpo 100.0 6.9E-40 1.5E-44 362.5 25.3 220 742-970 3-239 (252)
248 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.7E-39 3.7E-44 362.5 28.5 210 742-968 38-248 (282)
249 PRK11022 dppD dipeptide transp 100.0 5.5E-40 1.2E-44 374.5 25.0 224 744-975 4-251 (326)
250 TIGR01257 rim_protein retinal- 100.0 1.5E-40 3.4E-45 437.5 23.3 220 743-974 928-1156(2272)
251 PRK14262 phosphate ABC transpo 100.0 5.5E-40 1.2E-44 363.0 24.0 218 743-969 3-236 (250)
252 PRK11247 ssuB aliphatic sulfon 100.0 5.7E-40 1.2E-44 362.6 24.0 203 743-963 12-219 (257)
253 TIGR01188 drrA daunorubicin re 100.0 2.2E-40 4.9E-45 375.4 21.2 203 752-968 2-214 (302)
254 PRK14243 phosphate transporter 100.0 1.2E-39 2.6E-44 362.7 26.3 218 743-969 10-250 (264)
255 PRK14249 phosphate ABC transpo 100.0 1E-39 2.2E-44 360.9 25.6 218 743-969 4-237 (251)
256 cd03292 ABC_FtsE_transporter F 100.0 3.2E-40 6.9E-45 356.3 21.0 201 744-956 1-214 (214)
257 PRK13649 cbiO cobalt transport 100.0 5.7E-40 1.2E-44 368.7 23.8 218 744-968 3-235 (280)
258 PRK14244 phosphate ABC transpo 100.0 3.7E-40 8.1E-45 364.5 22.0 218 744-970 6-240 (251)
259 TIGR02769 nickel_nikE nickel i 100.0 9.2E-40 2E-44 363.9 25.2 218 744-968 3-241 (265)
260 PRK14270 phosphate ABC transpo 100.0 9.5E-40 2.1E-44 361.2 25.2 218 743-969 4-237 (251)
261 COG1127 Ttg2A ABC-type transpo 100.0 4.3E-40 9.3E-45 340.6 20.8 211 117-342 6-245 (263)
262 PRK13638 cbiO cobalt transport 100.0 5.6E-40 1.2E-44 366.9 23.1 212 744-968 2-226 (271)
263 PRK14261 phosphate ABC transpo 100.0 1E-39 2.2E-44 361.4 24.8 218 743-969 6-239 (253)
264 COG1117 PstB ABC-type phosphat 100.0 8.3E-41 1.8E-45 338.7 14.5 207 118-335 6-239 (253)
265 cd03257 ABC_NikE_OppD_transpor 100.0 4.9E-40 1.1E-44 358.4 21.7 211 744-960 2-228 (228)
266 PRK14238 phosphate transporter 100.0 1.1E-39 2.5E-44 364.1 25.1 219 742-969 23-257 (271)
267 cd03246 ABCC_Protease_Secretio 100.0 7.4E-40 1.6E-44 341.2 21.9 172 744-956 1-173 (173)
268 TIGR03873 F420-0_ABC_ATP propo 100.0 7.3E-40 1.6E-44 363.1 23.1 211 744-967 2-226 (256)
269 PRK13645 cbiO cobalt transport 100.0 7.6E-40 1.6E-44 369.1 23.7 220 742-968 5-241 (289)
270 PRK11300 livG leucine/isoleuci 100.0 9.7E-40 2.1E-44 362.2 24.1 219 743-967 5-243 (255)
271 cd03235 ABC_Metallic_Cations A 100.0 3.5E-40 7.6E-45 355.7 20.0 197 745-960 1-213 (213)
272 PRK10584 putative ABC transpor 100.0 9E-40 2E-44 356.3 23.4 206 743-959 6-227 (228)
273 COG0411 LivG ABC-type branched 100.0 1.8E-40 3.9E-45 346.0 16.9 220 744-969 5-241 (250)
274 PRK14236 phosphate transporter 100.0 1.4E-39 2.9E-44 363.8 25.3 219 742-969 24-258 (272)
275 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.5E-40 1.8E-44 352.2 22.7 200 744-960 1-211 (211)
276 PRK14253 phosphate ABC transpo 100.0 1.5E-39 3.3E-44 359.2 25.3 217 743-968 3-234 (249)
277 cd03290 ABCC_SUR1_N The SUR do 100.0 1.2E-39 2.6E-44 352.7 23.7 210 745-955 2-218 (218)
278 TIGR03415 ABC_choXWV_ATP choli 100.0 7.2E-40 1.6E-44 377.2 23.2 205 759-974 38-261 (382)
279 PRK14260 phosphate ABC transpo 100.0 1.3E-39 2.9E-44 361.6 24.3 218 743-969 7-245 (259)
280 PRK14266 phosphate ABC transpo 100.0 1.5E-39 3.2E-44 359.5 24.6 219 744-971 4-238 (250)
281 PRK14254 phosphate ABC transpo 100.0 2.5E-39 5.5E-44 363.3 26.8 219 742-969 38-271 (285)
282 PRK10771 thiQ thiamine transpo 100.0 2.2E-39 4.7E-44 354.1 25.5 208 744-968 2-220 (232)
283 PRK13639 cbiO cobalt transport 100.0 8E-40 1.7E-44 366.1 22.6 213 744-968 2-227 (275)
284 COG1245 Predicted ATPase, RNas 100.0 2.5E-39 5.5E-44 357.7 25.9 162 767-952 363-530 (591)
285 PRK10908 cell division protein 100.0 9.6E-40 2.1E-44 354.5 22.3 203 744-958 2-217 (222)
286 PRK14252 phosphate ABC transpo 100.0 1.9E-39 4.1E-44 361.6 25.1 222 739-969 12-251 (265)
287 cd03300 ABC_PotA_N PotA is an 100.0 7.9E-40 1.7E-44 357.5 21.7 211 744-969 1-222 (232)
288 cd03269 ABC_putative_ATPase Th 100.0 5.4E-40 1.2E-44 353.4 20.0 204 744-960 1-210 (210)
289 TIGR00968 3a0106s01 sulfate AB 100.0 1.8E-39 3.9E-44 355.7 24.3 210 744-968 1-221 (237)
290 PRK14241 phosphate transporter 100.0 1.7E-39 3.6E-44 360.7 24.2 218 743-969 4-244 (258)
291 cd03262 ABC_HisP_GlnQ_permease 100.0 7.1E-40 1.5E-44 353.3 20.3 204 744-956 1-213 (213)
292 PRK14275 phosphate ABC transpo 100.0 2E-39 4.4E-44 364.5 24.4 220 742-970 38-273 (286)
293 PRK14265 phosphate ABC transpo 100.0 3.9E-39 8.4E-44 360.2 26.5 219 742-969 19-260 (274)
294 COG4175 ProV ABC-type proline/ 100.0 5.5E-40 1.2E-44 349.5 18.5 221 743-974 4-261 (386)
295 cd03252 ABCC_Hemolysin The ABC 100.0 3.2E-39 6.9E-44 354.1 25.2 220 120-341 1-233 (237)
296 COG3839 MalK ABC-type sugar tr 100.0 7.5E-40 1.6E-44 364.8 20.5 203 119-335 3-225 (338)
297 PRK09473 oppD oligopeptide tra 100.0 2E-39 4.4E-44 370.2 24.6 226 743-976 12-260 (330)
298 PRK15093 antimicrobial peptide 100.0 1.9E-39 4.2E-44 371.3 24.1 225 743-975 3-256 (330)
299 PRK14271 phosphate ABC transpo 100.0 4.9E-39 1.1E-43 359.6 26.9 218 743-969 21-253 (276)
300 PRK11701 phnK phosphonate C-P 100.0 4.7E-39 1E-43 357.1 26.4 219 743-970 6-244 (258)
301 PRK15112 antimicrobial peptide 100.0 2.6E-39 5.5E-44 360.6 24.3 216 743-969 4-241 (267)
302 PRK10247 putative ABC transpor 100.0 1.7E-39 3.7E-44 353.1 22.0 208 743-963 7-223 (225)
303 PRK14263 phosphate ABC transpo 100.0 3.4E-39 7.4E-44 358.1 24.8 218 743-969 8-247 (261)
304 PRK14272 phosphate ABC transpo 100.0 4.6E-39 9.9E-44 356.1 25.3 219 743-970 4-239 (252)
305 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.7E-38 3.8E-43 354.4 30.0 237 95-338 16-252 (282)
306 TIGR01978 sufC FeS assembly AT 100.0 2E-39 4.4E-44 357.0 21.7 215 744-967 1-234 (243)
307 PRK14258 phosphate ABC transpo 100.0 4.5E-39 9.8E-44 357.6 24.2 220 742-970 6-248 (261)
308 COG3842 PotA ABC-type spermidi 100.0 7.8E-40 1.7E-44 366.6 18.1 204 118-335 4-228 (352)
309 COG1122 CbiO ABC-type cobalt t 100.0 1.6E-39 3.4E-44 349.8 19.8 203 119-334 3-229 (235)
310 PRK09984 phosphonate/organopho 100.0 4.3E-39 9.4E-44 358.2 24.0 210 743-965 4-240 (262)
311 PRK13547 hmuV hemin importer A 100.0 5.2E-39 1.1E-43 357.9 24.6 211 744-967 2-244 (272)
312 COG1136 SalX ABC-type antimicr 100.0 2.8E-39 6.1E-44 340.8 21.1 193 120-323 2-221 (226)
313 PRK11144 modC molybdate transp 100.0 3.7E-39 8E-44 371.9 23.9 211 744-970 2-221 (352)
314 cd03299 ABC_ModC_like Archeal 100.0 4.9E-39 1.1E-43 351.8 23.5 209 744-968 1-220 (235)
315 TIGR01277 thiQ thiamine ABC tr 100.0 4.2E-39 9E-44 347.2 22.3 201 744-961 1-212 (213)
316 PRK14246 phosphate ABC transpo 100.0 6E-39 1.3E-43 355.3 24.1 219 743-970 10-244 (257)
317 PRK14264 phosphate ABC transpo 100.0 9.4E-39 2E-43 362.2 26.1 219 741-968 43-290 (305)
318 COG3840 ThiQ ABC-type thiamine 100.0 1.6E-39 3.4E-44 320.7 16.8 200 120-335 2-221 (231)
319 PRK14255 phosphate ABC transpo 100.0 6.8E-39 1.5E-43 354.7 24.0 219 743-970 5-239 (252)
320 PRK11248 tauB taurine transpor 100.0 5.7E-39 1.2E-43 355.1 22.6 202 744-963 2-216 (255)
321 COG1118 CysA ABC-type sulfate/ 100.0 1.3E-39 2.8E-44 347.1 16.6 203 119-335 2-229 (345)
322 TIGR03740 galliderm_ABC gallid 100.0 1E-38 2.2E-43 346.7 22.8 204 744-964 1-210 (223)
323 cd03228 ABCC_MRP_Like The MRP 100.0 1E-38 2.2E-43 332.0 21.4 171 744-955 1-171 (171)
324 PRK10418 nikD nickel transport 100.0 1.8E-38 3.8E-43 351.6 24.4 215 743-970 4-233 (254)
325 TIGR02142 modC_ABC molybdenum 100.0 9.1E-39 2E-43 369.2 22.7 209 748-971 4-225 (354)
326 cd03288 ABCC_SUR2 The SUR doma 100.0 4E-38 8.6E-43 349.2 26.6 223 118-342 18-253 (257)
327 cd03253 ABCC_ATM1_transporter 100.0 3E-38 6.4E-43 346.2 25.3 218 120-340 1-231 (236)
328 cd03250 ABCC_MRP_domain1 Domai 100.0 2.1E-38 4.4E-43 339.5 23.4 201 120-321 1-204 (204)
329 COG2884 FtsE Predicted ATPase 100.0 4E-39 8.6E-44 320.9 16.4 195 119-326 1-219 (223)
330 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.1E-38 6.7E-43 346.5 25.0 215 120-335 1-228 (238)
331 cd03251 ABCC_MsbA MsbA is an e 100.0 2.9E-38 6.2E-43 345.8 24.4 215 120-336 1-228 (234)
332 TIGR02982 heterocyst_DevA ABC 100.0 1E-38 2.2E-43 346.0 20.4 202 744-956 2-219 (220)
333 PRK00349 uvrA excinuclease ABC 100.0 1.1E-37 2.3E-42 391.3 32.1 102 869-970 818-930 (943)
334 cd03244 ABCC_MRP_domain2 Domai 100.0 3.1E-38 6.8E-43 342.5 23.8 207 119-327 2-220 (221)
335 cd03254 ABCC_Glucan_exporter_l 100.0 3.5E-38 7.6E-43 344.0 24.2 212 119-333 2-226 (229)
336 PRK10419 nikE nickel transport 100.0 3.6E-38 7.9E-43 351.4 24.6 218 744-968 4-242 (268)
337 cd03229 ABC_Class3 This class 100.0 2E-38 4.4E-43 332.0 21.2 172 744-955 1-178 (178)
338 TIGR02323 CP_lyasePhnK phospho 100.0 4.1E-38 8.9E-43 348.7 24.4 218 743-969 3-240 (253)
339 TIGR02314 ABC_MetN D-methionin 100.0 1.5E-38 3.2E-43 363.1 21.1 204 120-334 2-231 (343)
340 cd03230 ABC_DR_subfamily_A Thi 100.0 2.3E-38 5.1E-43 329.9 20.6 170 744-956 1-173 (173)
341 PRK09544 znuC high-affinity zi 100.0 3.8E-38 8.2E-43 347.3 23.3 200 743-967 4-209 (251)
342 cd03297 ABC_ModC_molybdenum_tr 100.0 2.5E-38 5.3E-43 341.5 21.0 201 748-960 5-214 (214)
343 cd03234 ABCG_White The White s 100.0 2.2E-38 4.8E-43 344.8 20.6 212 744-960 4-226 (226)
344 COG3638 ABC-type phosphate/pho 100.0 1E-38 2.2E-43 329.5 16.8 201 119-332 3-236 (258)
345 COG0444 DppD ABC-type dipeptid 100.0 2.6E-38 5.7E-43 344.0 20.8 224 744-978 2-254 (316)
346 COG4559 ABC-type hemin transpo 100.0 2.4E-38 5.2E-43 320.0 19.0 212 744-968 2-231 (259)
347 PRK15056 manganese/iron transp 100.0 5.5E-38 1.2E-42 350.9 23.5 209 743-967 6-230 (272)
348 PRK13631 cbiO cobalt transport 100.0 6.7E-38 1.5E-42 356.2 24.2 211 116-336 18-268 (320)
349 cd03217 ABC_FeS_Assembly ABC-t 100.0 8.1E-38 1.8E-42 333.6 22.4 185 744-966 1-192 (200)
350 cd03261 ABC_Org_Solvent_Resist 100.0 4.4E-38 9.5E-43 344.6 20.8 201 120-334 1-227 (235)
351 COG1124 DppF ABC-type dipeptid 100.0 8.8E-38 1.9E-42 325.5 21.4 205 119-334 3-232 (252)
352 cd03233 ABC_PDR_domain1 The pl 100.0 6.9E-38 1.5E-42 334.5 21.3 189 744-960 4-202 (202)
353 PRK11650 ugpC glycerol-3-phosp 100.0 6.5E-38 1.4E-42 360.8 22.6 203 119-334 3-225 (356)
354 cd03213 ABCG_EPDR ABCG transpo 100.0 5.7E-38 1.2E-42 333.0 20.2 182 743-960 3-194 (194)
355 cd03214 ABC_Iron-Siderophores_ 100.0 5.3E-38 1.2E-42 329.4 19.4 177 745-960 1-180 (180)
356 cd03245 ABCC_bacteriocin_expor 100.0 1.8E-37 3.8E-42 336.4 24.1 206 119-326 2-220 (220)
357 cd03215 ABC_Carb_Monos_II This 100.0 6.6E-38 1.4E-42 329.3 19.3 172 743-956 4-182 (182)
358 TIGR03608 L_ocin_972_ABC putat 100.0 4.9E-38 1.1E-42 337.2 18.5 193 746-951 1-206 (206)
359 PRK11432 fbpC ferric transport 100.0 1.1E-37 2.3E-42 358.0 22.4 203 118-334 5-227 (351)
360 CHL00131 ycf16 sulfate ABC tra 100.0 1.5E-37 3.2E-42 344.1 22.8 210 743-965 7-239 (252)
361 PRK13650 cbiO cobalt transport 100.0 1.3E-37 2.9E-42 348.7 22.2 206 119-335 4-231 (279)
362 PRK03695 vitamin B12-transport 100.0 1.6E-37 3.5E-42 342.4 22.5 209 745-967 2-222 (248)
363 PRK15439 autoinducer 2 ABC tra 100.0 1.7E-37 3.7E-42 376.7 24.7 212 743-967 11-229 (510)
364 cd03232 ABC_PDR_domain2 The pl 100.0 1.1E-37 2.4E-42 330.4 19.5 181 743-960 3-192 (192)
365 COG4178 ABC-type uncharacteriz 100.0 2.9E-34 6.3E-39 337.9 49.9 467 462-952 89-587 (604)
366 cd03267 ABC_NatA_like Similar 100.0 1.2E-37 2.7E-42 340.9 19.3 195 758-960 34-236 (236)
367 cd03223 ABCD_peroxisomal_ALDP 100.0 2.7E-37 5.8E-42 319.4 20.7 163 744-954 1-163 (166)
368 PRK00635 excinuclease ABC subu 100.0 3.5E-36 7.6E-41 390.6 35.8 211 743-968 600-907 (1809)
369 PRK13651 cobalt transporter AT 100.0 3.8E-37 8.2E-42 348.1 23.5 205 120-335 3-256 (305)
370 PRK13643 cbiO cobalt transport 100.0 3.4E-37 7.3E-42 346.9 22.7 205 120-334 2-234 (288)
371 COG4619 ABC-type uncharacteriz 100.0 8.6E-38 1.9E-42 304.2 15.3 196 752-957 10-213 (223)
372 TIGR03265 PhnT2 putative 2-ami 100.0 2.1E-37 4.5E-42 356.2 21.3 204 118-335 3-226 (353)
373 PRK09700 D-allose transporter 100.0 1.6E-37 3.6E-42 377.5 21.6 216 743-967 5-234 (510)
374 PRK13637 cbiO cobalt transport 100.0 2.4E-37 5.3E-42 347.8 21.4 206 120-334 3-235 (287)
375 cd03216 ABC_Carb_Monos_I This 100.0 4.6E-37 1E-41 316.7 21.5 159 744-958 1-162 (163)
376 TIGR02770 nickel_nikD nickel i 100.0 3E-37 6.6E-42 336.7 21.3 201 760-970 1-218 (230)
377 PRK10762 D-ribose transporter 100.0 2E-37 4.4E-42 375.7 22.1 215 743-966 4-229 (501)
378 PRK13549 xylose transporter AT 100.0 1.9E-37 4.1E-42 376.5 21.8 215 743-966 5-231 (506)
379 COG1123 ATPase components of v 100.0 3E-37 6.5E-42 358.9 22.4 227 743-978 5-255 (539)
380 cd03231 ABC_CcmA_heme_exporter 100.0 4.2E-37 9.1E-42 328.4 21.7 194 744-951 1-198 (201)
381 PRK09452 potA putrescine/sperm 100.0 3.8E-37 8.2E-42 355.7 22.6 204 118-335 13-236 (375)
382 PRK09580 sufC cysteine desulfu 100.0 5.2E-37 1.1E-41 338.9 22.2 218 744-965 2-233 (248)
383 TIGR00960 3a0501s02 Type II (G 100.0 2E-37 4.3E-42 335.0 18.4 191 120-322 2-216 (216)
384 TIGR01184 ntrCD nitrate transp 100.0 3E-37 6.5E-42 336.5 19.9 190 761-966 1-203 (230)
385 PRK13647 cbiO cobalt transport 100.0 4.5E-37 9.7E-42 343.6 21.4 200 119-331 4-225 (274)
386 cd03296 ABC_CysA_sulfate_impor 100.0 6.6E-37 1.4E-41 336.1 22.3 201 119-333 2-226 (239)
387 PRK13538 cytochrome c biogenes 100.0 5.1E-37 1.1E-41 328.6 20.8 194 744-951 2-202 (204)
388 cd03290 ABCC_SUR1_N The SUR do 100.0 9.3E-37 2E-41 330.2 23.0 199 121-321 2-218 (218)
389 cd03259 ABC_Carb_Solutes_like 100.0 3.3E-37 7.2E-42 332.5 19.2 193 120-326 1-213 (213)
390 PRK11153 metN DL-methionine tr 100.0 4.1E-37 8.9E-42 353.7 21.1 204 120-334 2-231 (343)
391 cd03260 ABC_PstB_phosphate_tra 100.0 4E-37 8.6E-42 335.2 19.9 198 120-330 1-226 (227)
392 cd03219 ABC_Mj1267_LivG_branch 100.0 3.8E-37 8.1E-42 337.5 19.7 200 120-333 1-232 (236)
393 PRK10851 sulfate/thiosulfate t 100.0 6.5E-37 1.4E-41 352.1 22.6 202 119-334 2-227 (353)
394 PRK13646 cbiO cobalt transport 100.0 7.1E-37 1.5E-41 344.1 22.0 206 120-335 3-237 (286)
395 PRK13537 nodulation ABC transp 100.0 5.8E-37 1.3E-41 347.3 21.2 203 118-334 6-228 (306)
396 PRK10938 putative molybdenum t 100.0 6.8E-37 1.5E-41 370.5 23.2 210 744-967 4-224 (490)
397 PRK11000 maltose/maltodextrin 100.0 6.4E-37 1.4E-41 354.9 21.9 202 119-334 3-224 (369)
398 TIGR03258 PhnT 2-aminoethylpho 100.0 5E-37 1.1E-41 353.4 20.8 203 118-334 4-229 (362)
399 PRK13635 cbiO cobalt transport 100.0 1.4E-36 3.1E-41 340.3 23.9 206 119-336 5-232 (279)
400 PRK13634 cbiO cobalt transport 100.0 1E-36 2.2E-41 343.3 22.8 206 120-335 3-237 (290)
401 cd03226 ABC_cobalt_CbiO_domain 100.0 5.8E-37 1.3E-41 328.6 19.8 189 122-323 2-205 (205)
402 TIGR01186 proV glycine betaine 100.0 3.6E-37 7.8E-42 353.5 19.1 190 134-334 5-220 (363)
403 cd03248 ABCC_TAP TAP, the Tran 100.0 1.2E-36 2.6E-41 331.3 21.9 204 118-322 10-226 (226)
404 COG4598 HisP ABC-type histidin 100.0 2E-37 4.3E-42 304.3 14.1 216 743-971 6-245 (256)
405 PRK09536 btuD corrinoid ABC tr 100.0 1.2E-36 2.7E-41 353.2 23.0 203 119-335 3-230 (402)
406 TIGR02315 ABC_phnC phosphonate 100.0 9.3E-37 2E-41 335.9 20.8 199 120-331 2-233 (243)
407 cd03293 ABC_NrtD_SsuB_transpor 100.0 7.9E-37 1.7E-41 331.2 19.8 198 120-328 1-218 (220)
408 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.9E-37 1.3E-41 331.8 18.8 192 120-322 1-218 (218)
409 PRK13540 cytochrome c biogenes 100.0 1.1E-36 2.3E-41 325.2 20.2 193 744-950 2-198 (200)
410 PRK11247 ssuB aliphatic sulfon 100.0 1.9E-36 4E-41 334.6 22.8 198 118-329 11-219 (257)
411 PRK11629 lolD lipoprotein tran 100.0 1.3E-36 2.7E-41 332.5 21.3 199 118-327 4-228 (233)
412 PRK13543 cytochrome c biogenes 100.0 1.6E-36 3.5E-41 327.2 21.6 195 743-953 11-212 (214)
413 PRK14250 phosphate ABC transpo 100.0 2.1E-36 4.4E-41 332.4 22.8 203 119-334 3-222 (241)
414 cd03256 ABC_PhnC_transporter A 100.0 1E-36 2.2E-41 335.1 20.4 200 120-332 1-233 (241)
415 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.9E-36 6.3E-41 323.7 23.4 190 118-327 5-206 (207)
416 PRK13644 cbiO cobalt transport 100.0 1.8E-36 4E-41 338.7 22.7 202 120-334 2-225 (274)
417 cd03258 ABC_MetN_methionine_tr 100.0 1.2E-36 2.7E-41 332.7 20.5 203 120-333 2-230 (233)
418 cd03265 ABC_DrrA DrrA is the A 100.0 1.1E-36 2.4E-41 330.1 19.6 198 120-331 1-219 (220)
419 PRK13636 cbiO cobalt transport 100.0 2.2E-36 4.8E-41 339.6 22.7 204 119-335 5-233 (283)
420 COG4152 ABC-type uncharacteriz 100.0 2.5E-37 5.3E-42 318.7 13.4 215 743-970 2-222 (300)
421 cd03268 ABC_BcrA_bacitracin_re 100.0 2E-36 4.4E-41 325.1 21.1 193 120-326 1-208 (208)
422 COG4181 Predicted ABC-type tra 100.0 1E-36 2.2E-41 297.7 16.7 206 743-959 6-227 (228)
423 PRK11607 potG putrescine trans 100.0 1.9E-36 4.1E-41 350.5 22.2 204 117-334 17-240 (377)
424 PRK10261 glutathione transport 100.0 1.5E-36 3.3E-41 375.7 22.8 220 743-970 12-261 (623)
425 PRK11288 araG L-arabinose tran 100.0 1.5E-36 3.2E-41 368.2 22.3 211 743-962 4-224 (501)
426 PRK10982 galactose/methyl gala 100.0 1.5E-36 3.2E-41 367.5 22.1 212 746-966 1-222 (491)
427 TIGR01288 nodI ATP-binding ABC 100.0 2E-36 4.3E-41 343.3 21.7 201 119-333 4-224 (303)
428 TIGR00630 uvra excinuclease AB 100.0 9.9E-36 2.2E-40 372.9 29.9 97 869-965 816-923 (924)
429 cd03218 ABC_YhbG The ABC trans 100.0 2.2E-36 4.9E-41 330.5 21.1 200 120-333 1-222 (232)
430 PRK15134 microcin C ABC transp 100.0 2.8E-36 6E-41 368.2 24.1 219 743-969 5-248 (529)
431 cd03235 ABC_Metallic_Cations A 100.0 1.6E-36 3.5E-41 327.2 19.5 189 122-325 2-212 (213)
432 PRK14242 phosphate transporter 100.0 2.4E-36 5.2E-41 334.6 21.2 206 118-334 5-238 (253)
433 cd03224 ABC_TM1139_LivF_branch 100.0 2.3E-36 4.9E-41 328.1 20.7 200 120-332 1-220 (222)
434 PRK13536 nodulation factor exp 100.0 2.1E-36 4.6E-41 346.1 21.4 203 118-334 40-262 (340)
435 cd03266 ABC_NatA_sodium_export 100.0 1.9E-36 4.2E-41 327.7 20.0 196 120-326 2-218 (218)
436 cd03301 ABC_MalK_N The N-termi 100.0 1.9E-36 4.1E-41 326.6 19.5 193 120-326 1-213 (213)
437 PRK13632 cbiO cobalt transport 100.0 5.7E-36 1.2E-40 334.5 24.0 205 118-334 6-232 (271)
438 PRK13640 cbiO cobalt transport 100.0 5.3E-36 1.2E-40 336.3 23.8 204 119-334 5-233 (282)
439 PRK13641 cbiO cobalt transport 100.0 3.8E-36 8.2E-41 338.4 22.5 206 119-334 2-235 (287)
440 PRK13633 cobalt transporter AT 100.0 5.1E-36 1.1E-40 336.3 23.4 206 119-335 4-235 (280)
441 PRK14273 phosphate ABC transpo 100.0 4.3E-36 9.4E-41 332.7 22.6 206 118-334 6-239 (254)
442 TIGR02633 xylG D-xylose ABC tr 100.0 2.1E-36 4.5E-41 367.2 21.8 213 744-965 2-228 (500)
443 PRK13539 cytochrome c biogenes 100.0 4E-36 8.7E-41 322.4 21.5 193 744-953 3-200 (207)
444 PRK13642 cbiO cobalt transport 100.0 5E-36 1.1E-40 335.8 23.1 206 119-335 4-231 (277)
445 PRK14269 phosphate ABC transpo 100.0 3.2E-36 6.9E-41 332.0 21.0 205 119-334 2-231 (246)
446 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.9E-36 4.2E-41 337.7 19.3 200 121-334 26-251 (269)
447 TIGR00972 3a0107s01c2 phosphat 100.0 3.9E-36 8.4E-41 331.6 21.5 203 120-333 2-232 (247)
448 TIGR02211 LolD_lipo_ex lipopro 100.0 3.1E-36 6.7E-41 326.9 20.3 193 120-323 2-220 (221)
449 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4E-36 8.7E-41 329.2 21.3 201 120-334 2-222 (236)
450 cd03263 ABC_subfamily_A The AB 100.0 3.3E-36 7.2E-41 326.4 20.2 199 120-331 1-219 (220)
451 COG0410 LivF ABC-type branched 100.0 3.6E-36 7.9E-41 311.4 19.4 212 119-337 3-230 (237)
452 COG4608 AppF ABC-type oligopep 100.0 3E-36 6.4E-41 321.6 19.2 197 743-979 4-211 (268)
453 TIGR01189 ccmA heme ABC export 100.0 3.5E-36 7.5E-41 320.7 19.4 192 744-950 1-197 (198)
454 PRK11264 putative amino-acid A 100.0 3.1E-36 6.6E-41 333.2 19.1 202 119-334 3-234 (250)
455 PRK10584 putative ABC transpor 100.0 6.8E-36 1.5E-40 325.8 21.6 196 118-324 5-226 (228)
456 PRK11831 putative ABC transpor 100.0 5E-36 1.1E-40 334.6 21.0 203 118-334 6-234 (269)
457 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.9E-36 8.4E-41 330.6 19.7 203 120-333 1-225 (242)
458 cd03269 ABC_putative_ATPase Th 100.0 4.3E-36 9.4E-41 323.1 19.6 193 120-326 1-210 (210)
459 PRK13652 cbiO cobalt transport 100.0 1E-35 2.3E-40 333.3 23.4 204 119-335 3-229 (277)
460 PRK09493 glnQ glutamine ABC tr 100.0 6.7E-36 1.5E-40 328.3 21.3 201 120-334 2-226 (240)
461 PRK13649 cbiO cobalt transport 100.0 6.4E-36 1.4E-40 335.9 21.5 205 120-334 3-235 (280)
462 PRK11124 artP arginine transpo 100.0 7.7E-36 1.7E-40 328.3 21.7 200 119-332 2-229 (242)
463 PRK00635 excinuclease ABC subu 100.0 4.9E-34 1.1E-38 370.8 42.0 93 875-967 1382-1483(1809)
464 TIGR02673 FtsE cell division A 100.0 3.3E-36 7.1E-41 325.0 18.4 189 120-321 2-214 (214)
465 PRK13645 cbiO cobalt transport 100.0 7.7E-36 1.7E-40 336.6 22.1 207 118-334 5-241 (289)
466 COG1131 CcmA ABC-type multidru 100.0 5.8E-36 1.3E-40 335.9 20.8 202 119-333 4-226 (293)
467 PRK13648 cbiO cobalt transport 100.0 1.2E-35 2.5E-40 331.8 23.0 205 118-334 6-232 (269)
468 PRK10744 pstB phosphate transp 100.0 1.1E-35 2.3E-40 330.5 22.5 206 118-334 12-245 (260)
469 TIGR02324 CP_lyasePhnL phospho 100.0 5.8E-36 1.3E-40 325.4 20.0 201 744-951 2-222 (224)
470 PRK11614 livF leucine/isoleuci 100.0 1.4E-35 3E-40 325.2 23.0 202 119-334 5-227 (237)
471 cd03292 ABC_FtsE_transporter F 100.0 3.9E-36 8.4E-41 324.5 18.2 190 120-322 1-214 (214)
472 PRK13546 teichoic acids export 100.0 1.1E-35 2.4E-40 329.6 22.3 208 743-970 4-235 (264)
473 PRK10619 histidine/lysine/argi 100.0 7.5E-36 1.6E-40 331.2 20.9 204 118-334 4-242 (257)
474 PRK11231 fecE iron-dicitrate t 100.0 9.2E-36 2E-40 330.2 21.6 201 119-333 2-227 (255)
475 PRK13638 cbiO cobalt transport 100.0 9.3E-36 2E-40 332.9 21.6 201 120-334 2-226 (271)
476 TIGR03269 met_CoM_red_A2 methy 100.0 4.7E-36 1E-40 365.7 20.8 212 744-968 1-259 (520)
477 PRK10895 lipopolysaccharide AB 100.0 1.4E-35 3E-40 326.0 22.3 201 119-333 3-226 (241)
478 PRK10575 iron-hydroxamate tran 100.0 1.1E-35 2.4E-40 331.2 21.7 202 118-333 10-237 (265)
479 TIGR03005 ectoine_ehuA ectoine 100.0 8.5E-36 1.8E-40 329.9 20.4 201 120-334 1-237 (252)
480 PRK14248 phosphate ABC transpo 100.0 1.3E-35 2.8E-40 331.3 22.1 206 118-334 20-253 (268)
481 PRK13639 cbiO cobalt transport 100.0 1.1E-35 2.4E-40 332.7 21.5 202 120-334 2-227 (275)
482 cd03264 ABC_drug_resistance_li 100.0 8.5E-36 1.8E-40 321.0 19.8 191 120-326 1-211 (211)
483 TIGR03411 urea_trans_UrtD urea 100.0 1.6E-35 3.4E-40 325.9 22.2 200 119-333 2-231 (242)
484 COG1129 MglA ABC-type sugar tr 100.0 1.1E-35 2.4E-40 343.8 21.9 208 743-961 8-228 (500)
485 PRK11300 livG leucine/isoleuci 100.0 1.5E-35 3.2E-40 328.7 22.1 202 119-334 5-244 (255)
486 cd03225 ABC_cobalt_CbiO_domain 100.0 5.3E-36 1.1E-40 322.7 18.0 188 122-321 2-211 (211)
487 cd03247 ABCC_cytochrome_bd The 100.0 1.2E-35 2.6E-40 311.0 20.2 167 120-326 1-178 (178)
488 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-35 2.6E-40 319.9 20.7 191 120-326 1-211 (211)
489 PRK14249 phosphate ABC transpo 100.0 1.4E-35 3E-40 328.0 21.8 205 119-334 4-236 (251)
490 PRK14274 phosphate ABC transpo 100.0 1.2E-35 2.7E-40 329.9 21.5 206 118-334 11-244 (259)
491 TIGR03410 urea_trans_UrtE urea 100.0 9.2E-36 2E-40 325.2 20.0 199 120-331 1-219 (230)
492 PRK10070 glycine betaine trans 100.0 8.7E-36 1.9E-40 345.9 20.9 205 119-334 4-255 (400)
493 PRK15079 oligopeptide ABC tran 100.0 1.3E-35 2.9E-40 338.6 22.1 207 118-334 7-252 (331)
494 PRK14245 phosphate ABC transpo 100.0 1.1E-35 2.3E-40 328.8 20.5 206 118-334 2-235 (250)
495 PRK13548 hmuV hemin importer A 100.0 2.3E-35 5E-40 327.2 23.2 201 119-333 2-230 (258)
496 PRK14235 phosphate transporter 100.0 1.6E-35 3.4E-40 330.2 21.4 205 118-333 18-251 (267)
497 PRK14268 phosphate ABC transpo 100.0 1.7E-35 3.7E-40 328.5 21.4 206 118-334 11-243 (258)
498 PRK10247 putative ABC transpor 100.0 1.6E-35 3.4E-40 322.0 20.6 199 118-329 6-223 (225)
499 TIGR03771 anch_rpt_ABC anchore 100.0 7.9E-36 1.7E-40 323.8 18.2 186 766-968 1-202 (223)
500 PRK10771 thiQ thiamine transpo 100.0 4.8E-35 1E-39 319.8 24.6 200 120-335 2-221 (232)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.4e-179 Score=1674.80 Aligned_cols=954 Identities=52% Similarity=0.866 Sum_probs=863.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 19 YIFLILSLILQCNSFILNSIPVLVTVVSFGMFT-LLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRME 97 (1128)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~ 97 (1128)
..+||..++.+++.+++.++|+++++++|++|. ..++.+++..+|+++++|+.++.|+..+|..+..+.++.+|++|++
T Consensus 415 ~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~ 494 (1381)
T KOG0054|consen 415 KLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLK 494 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999 6688999999999999999999999999999999999999999999
Q ss_pred HHHhccccccCCCC--CCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001189 98 EFLLAEEKILLPNP--PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV 175 (1128)
Q Consensus 98 ~~l~~~~~~~~~~~--~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~ 175 (1128)
+||..+|....... +..+....++++|++|+|++.+..+.|+||||+|++|+++||||++|||||+||.+|+||++..
T Consensus 495 ~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~ 574 (1381)
T KOG0054|consen 495 EFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL 574 (1381)
T ss_pred HHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc
Confidence 99998875433322 2233445799999999999755567999999999999999999999999999999999999998
Q ss_pred CCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 176 SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 176 ~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
+| ...+++.+|||||+||++++||||||+||.++|+++|++++++|+|.+|++.+|.||.|+|||+|.+|||||||||+
T Consensus 575 sG-~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIs 653 (1381)
T KOG0054|consen 575 SG-SVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRIS 653 (1381)
T ss_pred cc-eEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHH
Confidence 86 56678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
||||+|+++||||||||+||+|+++.++||++|+++.+++||+|+|||+++++++||+|++|++|+|.+.|+|+|+++.+
T Consensus 654 LARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~ 733 (1381)
T KOG0054|consen 654 LARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSG 733 (1381)
T ss_pred HHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcc
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999888
Q ss_pred hHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHHH
Q 001189 336 ELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKD 415 (1128)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~ 415 (1128)
..+.++..+........ ..............................+..+.....+.++|+++.|.++|++|+.|++
T Consensus 734 ~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~ 811 (1381)
T KOG0054|consen 734 GDFAELAHEEESEQEEE--ASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIK 811 (1381)
T ss_pred hhHHHHhhccchhhccc--cccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHH
Confidence 88777633221110000 0000000000000000000000000000001111113445567788999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 416 ALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKT---HGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 492 (1128)
Q Consensus 416 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1128)
+.++++.+++++++.++.+.+..++++|+++|++...... .+..+|..+|+++++++.++.+++++++...+.++++
T Consensus 812 a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~ 891 (1381)
T KOG0054|consen 812 AAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASR 891 (1381)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877777888888999999999999999998865433 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 493 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 572 (1128)
Q Consensus 493 ~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 572 (1128)
++|+.|+++++|+||+|||++|+|||+|||++|++.+|..+|..+..++..++.+++++++++++.|+++++++|+.+++
T Consensus 892 ~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~ 971 (1381)
T KOG0054|consen 892 KLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIY 971 (1381)
T ss_pred HHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 573 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 652 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~ 652 (1128)
|..+.+|.+++|+++|+++.+|||+++|++|+++|+.|||||+.+++|...+...+|.+.++.+....+++|++++++++
T Consensus 972 ~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~i 1051 (1381)
T KOG0054|consen 972 YFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELL 1051 (1381)
T ss_pred HHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001189 653 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 732 (1128)
Q Consensus 653 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~ 732 (1128)
++++++.++.++++..... ..++.+|++++|++++++.++++++....+|+.++|+||+.+|.++|+|.|...+..
T Consensus 1052 g~~~v~~~al~~vl~~~~~----~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~ 1127 (1381)
T KOG0054|consen 1052 GNLVVLIAALFAVLLPSGL----ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEES 1127 (1381)
T ss_pred HHHHHHHHHHHHHHccCCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCC
Confidence 9999999999988776542 126789999999999999999999999999999999999999999998866655555
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001189 733 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 812 (1128)
Q Consensus 733 ~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~ 812 (1128)
.||+.||..|.|+|+|++++|+++.++|||||||+|+||||||||||||||||||+++|+|+.+|.+|+|.|||+||.++
T Consensus 1128 ~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~i 1207 (1381)
T KOG0054|consen 1128 RPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKI 1207 (1381)
T ss_pred CCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 813 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 813 ~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
++++||+++++|||||.||+||+|+||||+.+++|+++|+||++|++++++.++|.|||+.|.|+|.|||-||||.+|||
T Consensus 1208 gL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLA 1287 (1381)
T KOG0054|consen 1208 GLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLA 1287 (1381)
T ss_pred cHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCc
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSS 972 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~ 972 (1128)
|||+++++||+|||||+++|++|+..||++||+.|++||||.|+||++++.+||||+|||+|+|+|+|+|++|++++++.
T Consensus 1288 RALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~ 1367 (1381)
T KOG0054|consen 1288 RALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSL 1367 (1381)
T ss_pred HHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHh
Q 001189 973 FSKMVQS 979 (1128)
Q Consensus 973 ~~~~~~~ 979 (1128)
|++++.+
T Consensus 1368 f~~~l~~ 1374 (1381)
T KOG0054|consen 1368 FSSLLKE 1374 (1381)
T ss_pred HHHHHHH
Confidence 8855543
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.5e-173 Score=1711.52 Aligned_cols=1107 Identities=86% Similarity=1.297 Sum_probs=964.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 21 FLILSLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFL 100 (1128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l 100 (1128)
.++...+.+++.+++..+|+++.+++|++|.+.+|.+|++.+|+++++++.+..|+..+|..+..+.++++|++||++|+
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L 595 (1622)
T PLN03130 516 FRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELL 595 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777788888888889999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce
Q 001189 101 LAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA 180 (1128)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~ 180 (1128)
+.++....+.++.....+.|+++|++|+|+.++++++|+|+||++++|++++|+||+|||||||+++|+|+++|++|+.+
T Consensus 596 ~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I 675 (1622)
T PLN03130 596 LAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV 675 (1622)
T ss_pred cCcccccccCCcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE
Confidence 87654222121111222469999999999854457899999999999999999999999999999999999999984566
Q ss_pred eecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 181 VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 181 ~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
.++++|+||+|+||+|++||||||+||.++++++|++++++|+|.+|++.+|+||+|.|||+|.+|||||||||+||||+
T Consensus 676 ~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl 755 (1622)
T PLN03130 676 VIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV 755 (1622)
T ss_pred EEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHH
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 340 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 340 (1128)
|++|+||||||||||||++++++++++++....+++|+|+|||+++.++.||+|++|++|+++++|+++++.++.+.|..
T Consensus 756 y~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~ 835 (1622)
T PLN03130 756 YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQK 835 (1622)
T ss_pred hCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHH
Confidence 99999999999999999999999999888766689999999999999999999999999999999999999988888888
Q ss_pred HHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHHHHhhhH
Q 001189 341 LMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGL 420 (1128)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~ 420 (1128)
+.......++..++.... ........+.........+......++.+..+..+..+|+++.|.++|++|++|+++.|+.
T Consensus 836 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~ 914 (1622)
T PLN03130 836 LMENAGKMEEYVEENGEE-EDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGA 914 (1622)
T ss_pred HHHhcccccccccccccc-cccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccH
Confidence 776543211111100000 0000000000000000000000000001111222345677788999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 421 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 500 (1128)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 500 (1128)
+.++++++++++.+.+...+++|+++|.+..........+|..+|++++++..++.+++.+++...+.+++.++|.++++
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~ 994 (1622)
T PLN03130 915 WVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLG 994 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77667777777888888899999999998654333445678888999999999999999999999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 501 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 580 (1128)
Q Consensus 501 ~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 580 (1128)
+++++|+.||+++|+|+++|||++|++.+|..++..+..++..++.+++++++++++.++.+++++|++++++..+.+|.
T Consensus 995 ~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~ 1074 (1622)
T PLN03130 995 SILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQ 1074 (1622)
T ss_pred HHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888888888888888888889
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 581 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLT 660 (1128)
Q Consensus 581 ~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~ 660 (1128)
+..++.++.+..+++|+++++.|+++|+.+||+|+.++++.+.+.+..+...+..+.....++|++++++++++++++++
T Consensus 1075 ~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~ 1154 (1622)
T PLN03130 1075 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLT 1154 (1622)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999888887777
Q ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCC
Q 001189 661 ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS 740 (1128)
Q Consensus 661 ~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~ 740 (1128)
+.+.+...+.......+...+|++++|+..+..++.++.+.....+..+.+++|+.++.+.|+|.+...+...+++.||.
T Consensus 1155 ~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~ 1234 (1622)
T PLN03130 1155 ASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPS 1234 (1622)
T ss_pred HHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCC
Confidence 76666554433333445678999999999999999999999999999999999999999988876543333445567999
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
.|.|+|+||+|+|+++.+++|+|+||+|+|||+||||||||||||||+++|+|+++|++|+|.|||+|+++++++++|++
T Consensus 1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred CCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence 99999999999998766689999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
|++|||||.||+||||+||+|+.+++|+++++++++++++++++++|.||||.++|+|.+||||||||+||||||+++|+
T Consensus 1315 IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130 1315 LGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred cEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhh
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
|||||||||+||.+|++.|++.|++.+++||+|+||||++++.+||||+||++|+|+|.|+|+||++++++.|+++++.+
T Consensus 1395 ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1395 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998778999999998
Q ss_pred chhhHHHHHHHhhCccchhhhhhhhhhcccchhhhhhcHHHHHhhhhhhhhccccCccchhhhhhhhhhHHhhhhhhhhh
Q 001189 981 GAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVT 1060 (1128)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1060 (1128)
+..+.+.++..+.....+.....+....+.+.++....+|+.+++.+.+.++.+++.+++.+++++..++++++|+++.+
T Consensus 1475 ~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1554 (1622)
T PLN03130 1475 GAANAQYLRSLVFGGDEDRLAREESKALDGQRKWLASSRWAAAAQFALAVSLTSSQNDLQSLEIEDENSILEKTKDAVIT 1554 (1622)
T ss_pred ChhhhHHHHHHHhccccccccccchhcccchhhHHHhhhcccchhhhhhhhccccccchhccccCCchhhhhhhhhhHhH
Confidence 88776666665422222222233345566777887888888888888899999999999999999999999999999999
Q ss_pred hhhhccCCchHHHHHhhhcCccCchhHHHHHHHHHhhhhhhhHhhhhccccCCCCCCCccccCccCCC
Q 001189 1061 LQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1128 (1128)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1128 (1128)
+++|.+|+||+.+.+.+.++++++|+||+++|+|+||+++|+|++|||.||++|++++.++|||++||
T Consensus 1555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1622 (1622)
T PLN03130 1555 LQSVLEGKHDKEIDESLNQRQVPRDGWWSSLYRMVEGLAVMSRLARNRMQQSDHNFEGKSIDWDNVEM 1622 (1622)
T ss_pred HHHhhccccccccchhhhhccCCcccchHHHHHHHhccccchhHHHHhhccCcccccCCcCChhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.4e-152 Score=1513.50 Aligned_cols=966 Identities=76% Similarity=1.171 Sum_probs=831.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001189 22 LILSLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLL 101 (1128)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~ 101 (1128)
++...+.++..+++..+|.++.+++||+|.+.+|.+|++.+|+++++++.+..|+..+|..+..+.++++|++||.+|++
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~ 596 (1495)
T PLN03232 517 RKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLL 596 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455566666667777888878899999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee
Q 001189 102 AEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV 181 (1128)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~ 181 (1128)
.+++...+.++.......|+++|++|+|+.+.++++|+|+||++++|++++|+|++|||||||+++|+|+++|++|+...
T Consensus 597 ~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~ 676 (1495)
T PLN03232 597 SEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV 676 (1495)
T ss_pred CccccccccCCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE
Confidence 76532211111112223699999999998544578999999999999999999999999999999999999999988888
Q ss_pred ecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 182 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 182 ~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+++.|+||+|+||+|++||||||+||.++++++|++++++|++.+|++.+|+||+|.|||+|.+|||||||||+||||+|
T Consensus 677 ~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 756 (1495)
T PLN03232 677 IRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY 756 (1495)
T ss_pred ecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHH
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 341 (1128)
++|+||||||||||||++++++++++++....+++|+|+|||+++.++.||+|++|++|+++++|+++++.++++.|.++
T Consensus 757 ~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l 836 (1495)
T PLN03232 757 SNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKL 836 (1495)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHH
Confidence 99999999999999999999999999887666899999999999999999999999999999999999999888888887
Q ss_pred HHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHHHHhhhHH
Q 001189 342 MENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLW 421 (1128)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~ 421 (1128)
.......++..++....+..... .+... .+..........+.+..+.....+|+++.|.++|++|++|+++.|+.+
T Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~ 912 (1495)
T PLN03232 837 MENAGKMDATQEVNTNDENILKL--GPTVT--IDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLW 912 (1495)
T ss_pred HHhcccccccccccccccccccc--ccccc--ccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHH
Confidence 76543211110000000000000 00000 000000000000011111224456777889999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 422 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 501 (1128)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 501 (1128)
.++++++++++.+++..++++|+++|.+..........+|+.+|++++++..++.+++.+++...+.+++.++|++++++
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 992 (1495)
T PLN03232 913 VVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNS 992 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888899999999875432223356788999999999999999999999999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 502 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581 (1128)
Q Consensus 502 ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 581 (1128)
++++|+.||+++++|+++|||++|++.+|..++..+..++..++.++++++++.++.++.++.++|++++++..+.++.+
T Consensus 993 ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1495)
T PLN03232 993 ILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQS 1072 (1495)
T ss_pred HHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888888877777777777777778887777777888889
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTA 661 (1128)
Q Consensus 582 ~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 661 (1128)
..++.++.+..+++|+++++.|+++|+.+||+|+.++++.+.+.+..+...+..+.....++|+.++++.++.+++++++
T Consensus 1073 ~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~ 1152 (1495)
T PLN03232 1073 TSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTA 1152 (1495)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888899999998888777666666
Q ss_pred HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCC
Q 001189 662 TFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS 741 (1128)
Q Consensus 662 ~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~ 741 (1128)
.+.+...+..+....+...+|++++++..+..++.++.+.+..++..+.+++|+.++.+.|+|.+...+...+++.||..
T Consensus 1153 ~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~ 1232 (1495)
T PLN03232 1153 TFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSR 1232 (1495)
T ss_pred HHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCC
Confidence 66555433322223446678888899999999999999999999999999999999999887754322233345579999
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|.|+|+||+|+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.|||+|+++++++++|++|
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 99999999999987666899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+||||||.+|+||||+||+|+.+++|+++++++++++++++++++|.||||.++++|.+||||||||+||||||+++|+|
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhhc
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 981 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 981 (1128)
||||||||+||++|++.|++.|++.+++||+|+||||++++.+||||+||++|+|+|.|+|+||++++++.|+++++.++
T Consensus 1393 LILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1393 LVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988789999999887
Q ss_pred hhhHHHHHHH
Q 001189 982 AANAQYLRSL 991 (1128)
Q Consensus 982 ~~~~~~~~~~ 991 (1128)
..+.+.++..
T Consensus 1473 ~~~~~~~~~~ 1482 (1495)
T PLN03232 1473 PANAQYLSNL 1482 (1495)
T ss_pred hhhhHHHHHH
Confidence 7655544433
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.3e-142 Score=1416.38 Aligned_cols=950 Identities=42% Similarity=0.703 Sum_probs=802.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 22 LILSLILQCNSFILNSIPVLVTVVSFGMFTLL--GGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEF 99 (1128)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~ 99 (1128)
++...+..+..+++...|+++.+++|++|.+. ++.++++.+|+++++++.+..|+..+|..+..+.++++|++||++|
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~ 613 (1522)
T TIGR00957 534 KKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIF 613 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666677888888888888776 3679999999999999999999999999999999999999999999
Q ss_pred HhccccccCC--CCCCC-CCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCC
Q 001189 100 LLAEEKILLP--NPPLT-SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 176 (1128)
Q Consensus 100 l~~~~~~~~~--~~~~~-~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~ 176 (1128)
++.++..... ..... .....++++|++|+|+. .++++|+|+||++++|++++|+||||||||||+++|+|+++|++
T Consensus 614 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~ 692 (1522)
T TIGR00957 614 LSHEELEPDSIERRTIKPGEGNSITVHNATFTWAR-DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 692 (1522)
T ss_pred HcCcccccccccccccCCCCCCcEEEEEeEEEcCC-CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC
Confidence 9876532211 01111 11136999999999974 23679999999999999999999999999999999999999988
Q ss_pred CCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 177 DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 177 g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
|. +.+.++|+||||+||+|++||+|||.||.+++++++++++++|++.++++.+|+|++|.+|++|.+|||||||||+|
T Consensus 693 G~-i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaL 771 (1522)
T TIGR00957 693 GH-VHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSL 771 (1522)
T ss_pred cE-EEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHH
Confidence 65 45678899999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHc--cccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~--~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||+|++|+++|||||||+||+++++++++.++. ...+++|+|+|||+++.+..||+|++|++|+++++|+++++.++
T Consensus 772 ARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~ 851 (1522)
T TIGR00957 772 ARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR 851 (1522)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc
Confidence 9999999999999999999999999999998874 23568999999999999999999999999999999999999987
Q ss_pred chHHHHHHHHhchhhhhh--hhc-c---cCccccC----C--C-----CCCCCC---CCCCCCCC---c---c-c-cccc
Q 001189 335 GELFQKLMENAGKMEEYV--EEK-E---DGETVDN----K--T-----SKPAAN---GVDNDLPK---E---A-S-DTRK 386 (1128)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~--~~~-~---~~~~~~~----~--~-----~~~~~~---~~~~~~~~---~---~-~-~~~~ 386 (1128)
.+.|.++.......++.. ++. . ..+..+. . . ...... ........ . . . ....
T Consensus 852 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1522)
T TIGR00957 852 DGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAE 931 (1522)
T ss_pred chhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence 777777665322111000 000 0 0000000 0 0 000000 00000000 0 0 0 0000
Q ss_pred cccchhhhhhhhhhhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--CCCChhHHHHH
Q 001189 387 TKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNTI 464 (1128)
Q Consensus 387 ~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~i 464 (1128)
.+........+|.+..|.++|++|+.|+++.|.. .++++++++++...+..+.++|+++|.+.... ......+|..+
T Consensus 932 ~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~i 1010 (1522)
T TIGR00957 932 AKEETWKLMEADKAQTGQVELSVYWDYMKAIGLF-ITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSV 1010 (1522)
T ss_pred cccchhhhHHHHHHhcCcccHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHH
Confidence 0001112334566778999999999999998754 33344445556667778899999999975321 11223466778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHH
Q 001189 465 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 544 (1128)
Q Consensus 465 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~ 544 (1128)
|++++++..++.++..++....+.+++.++|++++++++++|+.||+++++|+++|||++|++.+|..++..+..++..+
T Consensus 1011 y~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~ 1090 (1522)
T TIGR00957 1011 YGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSL 1090 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888888889999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHH
Q 001189 545 SQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 624 (1128)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~ 624 (1128)
+.+++.++++.+..++..++++|++++++.+..+|.+..+++++.+...++|+++++.|+++|+.+||+|+.++++.+.+
T Consensus 1091 ~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~ 1170 (1522)
T TIGR00957 1091 FNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQS 1170 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHH
Confidence 88888888888888887777778877788888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 625 GKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASL 704 (1128)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 704 (1128)
.+..+...+..+.....++|+.+++++++.+++.+++.+.+...+.. ..+.+|+++.|+..+..++..+.+.+..
T Consensus 1171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~g~l~~~l~~~~~~~~~l~~l~~~~~~ 1245 (1522)
T TIGR00957 1171 DLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSL-----SAGLVGLSVSYSLQVTFYLNWLVRMSSE 1245 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888889999999999887776665555555433322 2467888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCH
Q 001189 705 AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGK 784 (1128)
Q Consensus 705 ~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGK 784 (1128)
++..+.|++|+.++.+.|+|.+...+...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||||||||
T Consensus 1246 ~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGK 1325 (1522)
T TIGR00957 1246 METNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGK 1325 (1522)
T ss_pred HHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCH
Confidence 99999999999999988877543223334556799999999999999998765689999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHH
Q 001189 785 SSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 864 (1128)
Q Consensus 785 STll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~ 864 (1128)
|||+++|+|+++|++|+|.|||+||++++++++|++|++|||||.+|+||||+||+|+++++|++++++++.+++++++.
T Consensus 1326 STL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~ 1405 (1522)
T TIGR00957 1326 SSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVS 1405 (1522)
T ss_pred HHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh
Q 001189 865 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 944 (1128)
Q Consensus 865 ~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~ 944 (1128)
++|.||||.++++|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++.+++||||+||||++++.+
T Consensus 1406 ~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~ 1485 (1522)
T TIGR00957 1406 ALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD 1485 (1522)
T ss_pred hCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhh
Q 001189 945 CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 945 ~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
||||+||++|+|+|+|+|+||+++ ++.|+++++++
T Consensus 1486 ~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1486 YTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred CCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 999999999999999999999987 47899988764
No 5
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.6e-137 Score=1368.23 Aligned_cols=961 Identities=36% Similarity=0.597 Sum_probs=790.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 21 FLILSLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFL 100 (1128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l 100 (1128)
.++...+..+..++++.+|.++++++|++|.+.++.||++.+|+++++++.++.|+..+|..+..+.++.+|++||++||
T Consensus 462 l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL 541 (1560)
T PTZ00243 462 LRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFL 541 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccC------C-------------------C-------C---C-------------------------CCCCCCcE
Q 001189 101 LAEEKILL------P-------------------N-------P---P-------------------------LTSGLPAI 120 (1128)
Q Consensus 101 ~~~~~~~~------~-------------------~-------~---~-------------------------~~~~~~~i 120 (1128)
..++.... . + + + .....+.+
T Consensus 542 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1560)
T PTZ00243 542 ECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSV 621 (1560)
T ss_pred cCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 87552100 0 0 0 0 00001246
Q ss_pred EEEeEEEEeCCC-------------------------------------CCCCceeeeeEEeeCCCEEEEEcCCCccHHH
Q 001189 121 SIRNGYFSWDSK-------------------------------------AERPTLLNINLDIPVGSLVAIVGGTGEGKTS 163 (1128)
Q Consensus 121 ~~~~~~f~~~~~-------------------------------------~~~~~L~~isl~i~~G~~~~ivG~~GsGKST 163 (1128)
.++|++|.|+.. +++++|+|+||+|++|++++|+|+|||||||
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKST 701 (1560)
T PTZ00243 622 VVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKST 701 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHH
Confidence 677777765310 1346899999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCC
Q 001189 164 LISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 243 (1128)
Q Consensus 164 Ll~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g 243 (1128)
|+++|+|+++|++|.+ .+++.||||||+||++++||+|||.|+.+.+.+++.++++.|++.++++.+|+|++|.+|++|
T Consensus 702 LL~~i~G~~~~~~G~i-~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g 780 (1560)
T PTZ00243 702 LLQSLLSQFEISEGRV-WAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKG 780 (1560)
T ss_pred HHHHHhcCCCCCCcEE-EECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCC
Confidence 9999999999998754 467789999999999999999999999888888899999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEe
Q 001189 244 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVK 323 (1128)
Q Consensus 244 ~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 323 (1128)
.+|||||||||+||||||++|++||||||||+||+++.+++++.++....+|+|+|+|||+++.++.||+|++|++|+++
T Consensus 781 ~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~ 860 (1560)
T PTZ00243 781 VNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVE 860 (1560)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999987765555789999999999999999999999999999
Q ss_pred eecChhHHhhcchHHHHHHHHhchhhhhhhhcccCc--cccCCCCC---CCCCCCCCCCCCccccccccccchhhhhhhh
Q 001189 324 EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGE--TVDNKTSK---PAANGVDNDLPKEASDTRKTKEGKSVLIKQE 398 (1128)
Q Consensus 324 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1128)
++|+++++.+.+ .+..+........+..+.....+ ..+..... ..........................+...|
T Consensus 861 ~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e 939 (1560)
T PTZ00243 861 FSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTRE 939 (1560)
T ss_pred EecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhHH
Confidence 999999998754 45555432111000000000000 00000000 0000000000000000000001112234556
Q ss_pred hhhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHH
Q 001189 399 ERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLA 478 (1128)
Q Consensus 399 ~~~~g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 478 (1128)
++..|.++|++|++|++.+|+...++++++++++.+.+....++|+++|.+.... .....|+.+|+++.++.++..++
T Consensus 940 ~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~--~~~~~~l~~y~~~~~~~~~~~~l 1017 (1560)
T PTZ00243 940 EKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK--LSAATYLYVYLGIVLLGTFSVPL 1017 (1560)
T ss_pred HHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCcccHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999877666666666777788888899999999875321 23346777888887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 479 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS 558 (1128)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1128)
+.+.....+.++++++|+.++++++++|+.||++++.|+++|||++|++.+|..++..+..++..++.+++.++++.+..
T Consensus 1018 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~ 1097 (1560)
T PTZ00243 1018 RFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQ 1097 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888899999999999999999999999999999999999999999999888888888888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 559 TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 638 (1128)
Q Consensus 559 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1128)
++.+++++|++++++.+..+|.+..++.++.....++|+++++.|+++|+.+||+|+.++.+.+.+.+..+...+..+..
T Consensus 1098 p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~ 1177 (1560)
T PTZ00243 1098 PFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLE 1177 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777677777788899999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001189 639 MGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY 718 (1128)
Q Consensus 639 ~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~ 718 (1128)
...++|+.++++++..++.++++.+.+....... .....+.+++++.++..+..++.++.+.+..++..+.+++|+.++
T Consensus 1178 ~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~ 1256 (1560)
T PTZ00243 1178 NVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRA-TSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYY 1256 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988776654443333322110000 001145678888888999999999999999999999999999999
Q ss_pred hcC-CCCCcccc-----------------------CCCCCC---CCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCC
Q 001189 719 IEL-PSEAPLVI-----------------------ESNRPP---PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPS 771 (1128)
Q Consensus 719 ~~~-~~e~~~~~-----------------------~~~~~~---~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~G 771 (1128)
.+. |+|+.... +...++ +.||..|.|+|+||+|+|+++.+++|+||||+|+||
T Consensus 1257 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~G 1336 (1560)
T PTZ00243 1257 TDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPR 1336 (1560)
T ss_pred HhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCC
Confidence 863 33321100 011111 235567899999999999876667999999999999
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHH
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLW 851 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~ 851 (1128)
|+||||||||||||||+++|+|+++|++|+|.|||+|+++++++++|++|+||||||.||+||||+||+++.+++|++++
T Consensus 1337 ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~ 1416 (1560)
T PTZ00243 1337 EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVW 1416 (1560)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC-CCEEEEeccccCCCHHHHHHHHHHHHHHcCCc
Q 001189 852 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR-SKILVLDEATAAVDVRTDALIQKTIREEFKSC 930 (1128)
Q Consensus 852 ~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~-p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~ 930 (1128)
++++.+++++++.++|.||||.++++|.+|||||||||||||||+++ |+|||||||||+||++|++.|++.|++.++++
T Consensus 1417 ~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~ 1496 (1560)
T PTZ00243 1417 AALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAY 1496 (1560)
T ss_pred HHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999996 89999999999999999999999999999999
Q ss_pred EEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhhchhhHH
Q 001189 931 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQ 986 (1128)
Q Consensus 931 Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 986 (1128)
|||+||||++++.+||+|+||++|+|+|.|+|+||+++.++.|+++++..+..+.+
T Consensus 1497 TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~~~~ 1552 (1560)
T PTZ00243 1497 TVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEAK 1552 (1560)
T ss_pred EEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhHHH
Confidence 99999999999999999999999999999999999987778999999887654433
No 6
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.9e-137 Score=1364.35 Aligned_cols=952 Identities=30% Similarity=0.525 Sum_probs=788.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001189 22 LILSLILQCNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF-MLPNMITQVVNANVSLKRMEEFL 100 (1128)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~-~l~~~~~~~~~~~~s~~Ri~~~l 100 (1128)
++...+..+..+++...|.++++++|++|.+.++ ++++.+|+++++++.++.|+. .+|..+..+.++.+|++||++||
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL 376 (1490)
T TIGR01271 298 RKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFL 376 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666677777888888899999987755 789999999999999999985 79999999999999999999999
Q ss_pred hccccccCCCCCCCCCCCcEEEEeEEEEeCCC-------------------------------CCCCceeeeeEEeeCCC
Q 001189 101 LAEEKILLPNPPLTSGLPAISIRNGYFSWDSK-------------------------------AERPTLLNINLDIPVGS 149 (1128)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~-------------------------------~~~~~L~~isl~i~~G~ 149 (1128)
..++....+. ......+.++|++|+|+.. ..+++|+|+||+|++|+
T Consensus 377 ~~~e~~~~~~---~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~ 453 (1490)
T TIGR01271 377 CKEEYKTLEY---NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQ 453 (1490)
T ss_pred cCcccccccc---cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCC
Confidence 8776422111 1112359999999999631 02468999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHh
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLD 229 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~ 229 (1128)
+++|+||||||||||+++|+|+++|++|. +.+.+.|+||+|+||+|++||+|||+||.++++++|.+++++|+|.++++
T Consensus 454 ~~~I~G~~GsGKSTLl~~l~G~~~~~~G~-i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~ 532 (1490)
T TIGR01271 454 LLAVAGSTGSGKSSLLMMIMGELEPSEGK-IKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIA 532 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999865 45778899999999999999999999998888889999999999999999
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh
Q 001189 230 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 309 (1128)
Q Consensus 230 ~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 309 (1128)
.+|+|+.|.+|++|.+|||||||||+||||+|++|++||||||||+||+++++++++.++....+++|+|+|||+++.+.
T Consensus 533 ~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~ 612 (1490)
T TIGR01271 533 LFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLK 612 (1490)
T ss_pred hccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887665557899999999999999
Q ss_pred cCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHhchhh--------------------h--h-----hhh--c----c
Q 001189 310 QVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKME--------------------E--Y-----VEE--K----E 356 (1128)
Q Consensus 310 ~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~--------------------~--~-----~~~--~----~ 356 (1128)
.||+|++|++|++++.|+++++....+.|........... . . .++ . +
T Consensus 613 ~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1490)
T TIGR01271 613 KADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQP 692 (1490)
T ss_pred hCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999876555554442100000 0 0 000 0 0
Q ss_pred cCcc-c--------------------------------cCCCCCCCCCC-----C----CCCCC----------------
Q 001189 357 DGET-V--------------------------------DNKTSKPAANG-----V----DNDLP---------------- 378 (1128)
Q Consensus 357 ~~~~-~--------------------------------~~~~~~~~~~~-----~----~~~~~---------------- 378 (1128)
..+. . ......+.... . ....+
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1490)
T TIGR01271 693 PPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRR 772 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccc
Confidence 0000 0 00000000000 0 00000
Q ss_pred -------Ccc------c-----c--------------c------cc-ccc-----------c--hhhhhhhhhhhcccch
Q 001189 379 -------KEA------S-----D--------------T------RK-TKE-----------G--KSVLIKQEERETGVVS 406 (1128)
Q Consensus 379 -------~~~------~-----~--------------~------~~-~~~-----------~--~~~~~~~~~~~~g~~~ 406 (1128)
... . . . +. ... . ......+|++..|.++
T Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 852 (1490)
T TIGR01271 773 QSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTT 852 (1490)
T ss_pred cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCccc
Confidence 000 0 0 0 00 000 0 0112344566788999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------cc-C-----------CCChhHH-HHHHH
Q 001189 407 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQS-------SL-K-----------THGPLFY-NTIYS 466 (1128)
Q Consensus 407 ~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-------~~-~-----------~~~~~~~-~~i~~ 466 (1128)
|++|++|+++.|+++.++++++++++.+++..+.++|+.+|.... .. . .....+| .++|.
T Consensus 853 ~~vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1490)
T TIGR01271 853 WNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYV 932 (1490)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHH
Confidence 999999999988766666666667777888889999999886421 00 0 0011223 44555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHH
Q 001189 467 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 546 (1128)
Q Consensus 467 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~ 546 (1128)
.+.++..++.+++.+++...+.+++.++|.+++++++++|+.||+++|+|+++|||++|++.+|..++..+..++..++.
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~ 1012 (1490)
T TIGR01271 933 GTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLI 1012 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555667778888889999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHH
Q 001189 547 LLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 626 (1128)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~ 626 (1128)
+++.+++++++.++++++++|++++++.+..+|.+..+++++.+..+++|+++++.|+++|+.+||+|++++++.+++.+
T Consensus 1013 ~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~ 1092 (1490)
T TIGR01271 1013 VLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHK 1092 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHH
Confidence 88888888888888877788888888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 627 SMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 706 (1128)
Q Consensus 627 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e 706 (1128)
..+...+..+......+|+.+++++++.+++..++.+++.... . ..+.+|++++++..+...+.++.+.+..++
T Consensus 1093 ~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~~-~-----~~g~~g~~l~~~~~l~~~l~~l~~~~~~le 1166 (1490)
T TIGR01271 1093 ALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQ-D-----GEGEVGIILTLAMNILSTLQWAVNSSIDVD 1166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888888889999999988766554443333332211 1 134578888888889999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccccC--------------CCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCc
Q 001189 707 NSLNAVERVGNYIELPSEAPLVIE--------------SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSD 772 (1128)
Q Consensus 707 ~~~~a~~Ri~~~~~~~~e~~~~~~--------------~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge 772 (1128)
..+.+++|+.+|.+.|+|.+...+ ...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+|||
T Consensus 1167 ~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~Ge 1246 (1490)
T TIGR01271 1167 GLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQ 1246 (1490)
T ss_pred HHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCC
Confidence 999999999999988776432111 112345799999999999999998766789999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHH
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 852 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~ 852 (1128)
+||||||||||||||+++|+|+++ ++|+|.|||+|+++++++++|++|+||||+|.+|+||||+||+|+.+++|+++++
T Consensus 1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~ 1325 (1490)
T TIGR01271 1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWK 1325 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHH
Confidence 999999999999999999999997 7999999999999999999999999999999999999999999998899999999
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEE
Q 001189 853 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTM 932 (1128)
Q Consensus 853 ~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tv 932 (1128)
+|+++++++++.++|.||||.++++|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.+++|||
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~Tv 1405 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTV 1405 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhhchhhHH
Q 001189 933 LIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQ 986 (1128)
Q Consensus 933 i~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 986 (1128)
|+||||++++.+||||+||++|+|+|.|+|++|+++ ++.|+++++..++.+..
T Consensus 1406 I~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~~~~~ 1458 (1490)
T TIGR01271 1406 ILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADRLKLF 1458 (1490)
T ss_pred EEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhChhccc
Confidence 999999999999999999999999999999999974 68999999887665443
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-133 Score=1231.20 Aligned_cols=917 Identities=25% Similarity=0.357 Sum_probs=685.8
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-CCCCC
Q 001189 40 VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN--P-PLTSG 116 (1128)
Q Consensus 40 ~~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~--~-~~~~~ 116 (1128)
.....+|||..++..+..+++.+++++...-.....+.+....+..+..+++|+.+|.+.++..+...... . .....
T Consensus 268 ~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~ 347 (1228)
T KOG0055|consen 268 SYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSI 347 (1228)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCccccc
Confidence 34456889988888899999999988866666666777877889999999999999999998765432211 1 11122
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce------------eecC
Q 001189 117 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRG 184 (1128)
Q Consensus 117 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~------------~~~~ 184 (1128)
...|+|+||+|+||.+++.++|+|+||+|++|+.++|||+|||||||++++|.|+|+|++|.+. ++|+
T Consensus 348 ~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred ccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 3469999999999998888999999999999999999999999999999999999999998643 3577
Q ss_pred cEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 185 TVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
+||.|.|+|.||++||+|||.+|++ .+.+++.++++.++.++++..+|+|++|.+||+|.+|||||||||||||||+++
T Consensus 428 ~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~ 507 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRN 507 (1228)
T ss_pred hcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhC
Confidence 8999999999999999999999985 578999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
|+||||||||||||+++++.+.+ ++....+|+|.|+|+||++.+++||+|++|++|+|++.|+|+||++.++.|.++++
T Consensus 508 P~ILLLDEaTSaLD~~se~~Vq~-ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~ 586 (1228)
T KOG0055|consen 508 PKILLLDEATSALDAESERVVQE-ALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVR 586 (1228)
T ss_pred CCEEEecCcccccCHHHHHHHHH-HHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHH
Confidence 99999999999999999887765 56767789999999999999999999999999999999999999999999999987
Q ss_pred Hhchhhhhhh-hcccCccccCCCC-CCCCCCCCCCC---CCccccccccccchhhhhhhhhhhcccchHHHHHHHHHHhh
Q 001189 344 NAGKMEEYVE-EKEDGETVDNKTS-KPAANGVDNDL---PKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALG 418 (1128)
Q Consensus 344 ~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g 418 (1128)
.+........ +..+........+ ........... .......+...+........+. ...++..+..+.+.
T Consensus 587 ~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~s~~~i~k~~~p-- 661 (1228)
T KOG0055|consen 587 LQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEED---EKVSFWRIFKLNKP-- 661 (1228)
T ss_pred HHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccccccccccccccccc---ccccHHHHHHhccc--
Confidence 6532221110 0000000000000 00000000000 0000000000000000000000 11222222222211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcccc-cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 419 GLWVVLILLLCYFLTETLRVSSSTW----LSYWTDQSS-LKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKR 493 (1128)
Q Consensus 419 ~~~~~~~~~~~~~l~~~~~~~~~~~----l~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1128)
.++++++..++.++.........+. +..+..... ........|..+|+++++...+..+++.|++.+.+.+...+
T Consensus 662 e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R 741 (1228)
T KOG0055|consen 662 EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKR 741 (1228)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333333322222222222 222221111 11112345889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcccccc--CChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 001189 494 LHDAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL---WAIMPL 568 (1128)
Q Consensus 494 l~~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l 568 (1128)
+|.++|+++++.++.|||. |+ |.+.+|+.+|...+...+...+..++..+..++..+++.++.+|-+. .++.|+
T Consensus 742 ~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pl 820 (1228)
T KOG0055|consen 742 LRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPL 820 (1228)
T ss_pred HHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999984 66 99999999999999888877777777777777777766666665433 345565
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 569 LLLFYAAYLYYQ-STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAI 647 (1128)
Q Consensus 569 l~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 647 (1128)
+++....+..+. ...++.+.... .......|++.+++||++|+.++++.+.+.+.++...+...... .|.++
T Consensus 821 l~~~~~~~~~~~~~~~~~~~~~~~----ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~---~i~gl 893 (1228)
T KOG0055|consen 821 LILSGYLQKKFLKGFSKDDKKAYE----EASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG---LISGL 893 (1228)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 555444443332 22222222111 12346689999999999999999999999988887766655433 22232
Q ss_pred HHHH-------HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001189 648 RLEI-------VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE 720 (1128)
Q Consensus 648 ~l~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~ 720 (1128)
...+ ..++.+|+++.+ ...+.......+.....+.++ +..+.+ .............|+.++.++++
T Consensus 894 ~f~~sqs~~~~~~A~~f~~G~~L--i~~g~~~~~~~~~vf~~l~~t-a~~~~~----~~s~~Pd~~ka~~Aa~~iF~i~d 966 (1228)
T KOG0055|consen 894 GFGFSQSLLFFVYALSFWYGARL--ISNGEMTFEDVFRVFMALSFT-AMALGQ----ASSYAPDISKAKIAAGSIFEILD 966 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH--HhcCCcCHHHHHHHHHHHHHH-HHHHHH----HHhhCcHHHHHHHHHHHHHHHhc
Confidence 2222 222333333222 233333333333222222111 111222 22233344556778899999988
Q ss_pred CCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Q 001189 721 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799 (1128)
Q Consensus 721 ~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~ 799 (1128)
.++..+...+.. ....+..|.|+|+||+|+||.. ..++|+|+||+|++|+.+||||||||||||++.+|.|+|+|++
T Consensus 967 r~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 967 RKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred CCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 665322211111 1112357899999999999732 2479999999999999999999999999999999999999999
Q ss_pred ceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCC
Q 001189 800 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 878 (1128)
Q Consensus 800 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g 878 (1128)
|.|.|||.||++++++.||++||+|.|+|.||++||||||.++. +.+.+|+.+|++.+++++||.++|.||||.|||+|
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence 99999999999999999999999999999999999999999873 46899999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEE
Q 001189 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 958 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~ 958 (1128)
.+||||||||+|||||++|||+||||||+||+||.++++.+|++|++...++|+|+|+||++++++||.|.|+++|+|+|
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhhcCCCchHHHHHhh
Q 001189 959 YDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 959 ~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
+|+|++|++ ..|.|+++++.+
T Consensus 1205 ~GtH~~L~~-~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1205 QGTHDELLA-KRGIYFRLVQLQ 1225 (1228)
T ss_pred cccHHHHHh-CCCchHHHhhhc
Confidence 999999999 567899888753
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.1e-118 Score=1175.33 Aligned_cols=929 Identities=20% Similarity=0.286 Sum_probs=661.8
Q ss_pred HHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC-C
Q 001189 42 VTVVSFGMFTLLGG--------DLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-P 112 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~--------~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~-~ 112 (1128)
+.++++|.+.+..| .++++.+++++........++..+...+..+..+.+|++||.++++.+++...... .
T Consensus 296 ~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~ 375 (1466)
T PTZ00265 296 AFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGK 375 (1466)
T ss_pred HHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCc
Confidence 45567888888764 57888888776555444455556666788999999999999999987653221111 0
Q ss_pred CCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------
Q 001189 113 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------- 181 (1128)
Q Consensus 113 ~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------- 181 (1128)
..+....|+++|++|+|+.++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 376 ~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 376 KLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINL 455 (1466)
T ss_pred cCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCH
Confidence 011123699999999998544457999999999999999999999999999999999999999876432
Q ss_pred --ecCcEEEEecCCCCCcccHHHHHhcCCC--------------------------------------------------
Q 001189 182 --IRGTVAYVPQVSWIFNATVRDNILFGSA-------------------------------------------------- 209 (1128)
Q Consensus 182 --~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-------------------------------------------------- 209 (1128)
+|+.||||+|+|.+|++||+|||.+|..
T Consensus 456 ~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 456 KWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 2456999999999999999999998731
Q ss_pred --------CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHH
Q 001189 210 --------FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 281 (1128)
Q Consensus 210 --------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~ 281 (1128)
.+++++.++++.+++++++..+|+|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||++++
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 234678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCC----------------------------------------
Q 001189 282 RQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEG---------------------------------------- 320 (1128)
Q Consensus 282 ~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G---------------------------------------- 320 (1128)
+.+.+.+.+... +|+|+|+||||++.++.||+|++|++|
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNN 695 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccccccccccc
Confidence 999876654332 589999999999999999999999986
Q ss_pred -------eEeeecChhHHhh-cchHHHHHHHHhchhhhhhhhc--ccCc--cccCCC-CCCCC--CCCC-----CCCC-C
Q 001189 321 -------MVKEEGTFEDLSN-NGELFQKLMENAGKMEEYVEEK--EDGE--TVDNKT-SKPAA--NGVD-----NDLP-K 379 (1128)
Q Consensus 321 -------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~-~~~~~--~~~~-----~~~~-~ 379 (1128)
+|+++|+|++|++ ..+.|..+...+.......... .... ...... ..+.. .... .... .
T Consensus 696 ~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1466)
T PTZ00265 696 KINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESAS 775 (1466)
T ss_pred ccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 5788888886543221100000 0000 000000 00000 0000 0000 0
Q ss_pred -c-cccc--c--ccccchhhhhhhhhh---hc-ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001189 380 -E-ASDT--R--KTKEGKSVLIKQEER---ET-GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTD 449 (1128)
Q Consensus 380 -~-~~~~--~--~~~~~~~~~~~~~~~---~~-g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 449 (1128)
. .... . .....+......+.. .. ....+..+.++..... ..+++.+++.++...+....++.++.+.+
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 853 (1466)
T PTZ00265 776 NKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYK--KDVTIIALSILVAGGLYPVFALLYAKYVS 853 (1466)
T ss_pred cccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 0 000000000000000 00 0001111122221111 11222233333334444444444554443
Q ss_pred ccccC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--CChhHHHHHHhh
Q 001189 450 QSSLK---THGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRIINRFAK 524 (1128)
Q Consensus 450 ~~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~ 524 (1128)
..... ......|..++++++++..++.+++.++....+.+...+++..+|+++++.|+.||++ +++|++++|+++
T Consensus 854 ~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~ 933 (1466)
T PTZ00265 854 TLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINR 933 (1466)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHH
Confidence 22110 1112345666777777888888999999999999999999999999999999999986 889999999999
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-------------
Q 001189 525 DLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST--AREVKRL------------- 589 (1128)
Q Consensus 525 D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~--~~~~~~~------------- 589 (1128)
|+..+...+...+..++..++.++..++++++++|...++++|+++++...+....+. .++.++.
T Consensus 934 Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1466)
T PTZ00265 934 DVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNS 1013 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhh
Confidence 9999988776666666666666666666666666655544444332222111111110 1111111
Q ss_pred HHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 001189 590 DSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI----VGGLMIWLTATFAV 665 (1128)
Q Consensus 590 ~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~----~~~~~~~~~~~~~v 665 (1128)
.....+.....+.|++.|+++||+|+.++++.+++.+..+...+..........+......+ ..++++|+++ +.+
T Consensus 1014 ~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~lv 1092 (1466)
T PTZ00265 1014 DDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGS-FLI 1092 (1466)
T ss_pred hHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 11123345678899999999999999999999888887776655444332222222211211 1222233333 222
Q ss_pred HhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCC-CCCCCCCccE
Q 001189 666 VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP-PPGWPSSGSI 744 (1128)
Q Consensus 666 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~-~~~~p~~g~i 744 (1128)
. .+..+... .+.++ .+.......+..+...+........+.+|+.++++.+++.+........ ....+..|.|
T Consensus 1093 ~-~g~it~g~----l~~~~-~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I 1166 (1466)
T PTZ00265 1093 R-RGTILVDD----FMKSL-FTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKI 1166 (1466)
T ss_pred H-cCCCCHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceE
Confidence 2 22222111 11111 1111112234445566677788899999999998765432211111110 0011234789
Q ss_pred EEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--------------------------
Q 001189 745 KFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-------------------------- 797 (1128)
Q Consensus 745 ~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-------------------------- 797 (1128)
+|+||+|+|++. ..++|+|+||+|+||+++|||||||||||||+++|+|+|+|
T Consensus 1167 ~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 (1466)
T PTZ00265 1167 EIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDE 1246 (1466)
T ss_pred EEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccc
Confidence 999999999742 24799999999999999999999999999999999999999
Q ss_pred ----------------------------CCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHH
Q 001189 798 ----------------------------ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDA 848 (1128)
Q Consensus 798 ----------------------------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~ 848 (1128)
++|+|++||+|++++++.++|++|+||||+|.||++||||||.++. +.+++
T Consensus 1247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~e 1326 (1466)
T PTZ00265 1247 EQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRE 1326 (1466)
T ss_pred ccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHH
Confidence 6999999999999999999999999999999999999999999874 47899
Q ss_pred HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-
Q 001189 849 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF- 927 (1128)
Q Consensus 849 ~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~- 927 (1128)
++++|++.++++++|.++|.||||.||++|.+|||||||||||||||+++|+|||||||||+||+++++.|+++|++..
T Consensus 1327 eI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~ 1406 (1466)
T PTZ00265 1327 DVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKD 1406 (1466)
T ss_pred HHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -CCcEEEEeecCchhhhhcCEEEEEeC----CEEE-EecChhHHhhcCCCchHHHHHh
Q 001189 928 -KSCTMLIIAHRLNTIIDCDRILLLDS----GRVL-EYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 928 -~~~Tvi~vtH~l~~~~~~D~i~vl~~----G~i~-~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
+++|+|+||||+++++.||+|+||++ |+++ |.|+|+||+++.++.|+++++.
T Consensus 1407 ~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~ 1464 (1466)
T PTZ00265 1407 KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464 (1466)
T ss_pred cCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhh
Confidence 68999999999999999999999999 9955 8999999998656788888764
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-82 Score=738.74 Aligned_cols=545 Identities=26% Similarity=0.384 Sum_probs=433.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc-CCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 425 ILLLCYFLTETLRVSSSTWLSYWTDQSSL-KTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 501 (1128)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 501 (1128)
..+++.++.....++.|.+++..+|.... ..... .-...+..++.+++.+++.++.+++.+.+.+...++|..+|++
T Consensus 151 ~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~s 230 (716)
T KOG0058|consen 151 AAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRS 230 (716)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555566655554443222 11111 1223455666778888999999999999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 502 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581 (1128)
Q Consensus 502 ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 581 (1128)
++++.+.|||.+.+|++++|++.|...+.+.++..++..+......++.++++++++|-...+.+..+.+...+..+|.+
T Consensus 231 il~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~ 310 (716)
T KOG0058|consen 231 LLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGK 310 (716)
T ss_pred HHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888875544433333333444445555
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HH
Q 001189 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGG---L-MI 657 (1128)
Q Consensus 582 ~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~---~-~~ 657 (1128)
..|++.+...++-+.......|.+.+++|+|+|+.|.+..+++.+.++...+...........+....++.+. + +.
T Consensus 311 ~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL 390 (716)
T KOG0058|consen 311 YLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSIL 390 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHH
Confidence 5555555555555566677889999999999999999888888777776555543333222222222222221 1 22
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001189 658 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 737 (1128)
Q Consensus 658 ~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~ 737 (1128)
++++.+ +. .+.++ .+.+.-.+.|...+...+..+...++.+.....|.+|+.++++.++.-+.. +.. .+.
T Consensus 391 ~~Gg~L-v~-~g~mt-----~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~-~p~ 460 (716)
T KOG0058|consen 391 FYGGHL-VL-TGSLT-----SGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTL-APD 460 (716)
T ss_pred Hhccch-hh-cCccc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--Ccc-ccc
Confidence 222222 21 11111 122223344555666777777888888889999999999999876654332 111 112
Q ss_pred CCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001189 738 WPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 816 (1128)
...|.|+|+||+|+|+.. ..++|+|+||+|+|||+||+|||||+||||++++|.++|+|++|+|.+||+||+++++..
T Consensus 461 -~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~ 539 (716)
T KOG0058|consen 461 -HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKY 539 (716)
T ss_pred -cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHH
Confidence 457899999999999743 247999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+|++||+|.|||.||++||+|||.++. ..+++++..|++.+++++||..+|+||||.|||+|.+||||||||+||||||
T Consensus 540 lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL 619 (716)
T KOG0058|consen 540 LRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL 619 (716)
T ss_pred HHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH
Confidence 999999999999999999999998765 4689999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHH
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 975 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 975 (1128)
++||+||||||+||+||.++|..++++|.+..+++|||+|+||++++++||+|+|+++|+|+|.|+|+||++++++.|++
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~ 699 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAK 699 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred HHHhh
Q 001189 976 MVQST 980 (1128)
Q Consensus 976 ~~~~~ 980 (1128)
+++..
T Consensus 700 Lv~~q 704 (716)
T KOG0058|consen 700 LVQRQ 704 (716)
T ss_pred HHHHh
Confidence 98764
No 10
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=7.2e-76 Score=717.17 Aligned_cols=543 Identities=29% Similarity=0.431 Sum_probs=436.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 422 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-PLFY-NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 499 (1128)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 499 (1128)
.+.-+++..++.+.+...+|.+.....|..-..... ...+ ...+++..+...++.+++++++...+.+....+-.+++
T Consensus 155 ~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~ 234 (709)
T COG2274 155 LLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFF 234 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334445556666777778888888877775443332 2222 23445556778899999999999999999999999999
Q ss_pred HHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 500 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 579 (1128)
Q Consensus 500 ~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 579 (1128)
+|+++.|+.||+++++|++++|+ +|++.|...+.......+..+...+..++++.+.++...|+.+..++++.++....
T Consensus 235 ~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~ 313 (709)
T COG2274 235 RHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIF 313 (709)
T ss_pred HHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 57777777776655555555555555555555556555555444444444443333
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 001189 580 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM----GANRWLAIRLEIVGGL 655 (1128)
Q Consensus 580 ~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~wl~~~l~~~~~~ 655 (1128)
.+..++..+......+...+.+.|++.|+.++|+.+.|.++...+.+.++...+..+... ..+.+.++...+...+
T Consensus 314 ~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~ 393 (709)
T COG2274 314 QPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVL 393 (709)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444556778999999999999999999988888877777666555444 3444444444555555
Q ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001189 656 MIWLTATFAVVQNGSAENQEAFASTMGLLLSYA---LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 732 (1128)
Q Consensus 656 ~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~---~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~ 732 (1128)
++|+++....-.. .++|.++++. ..++.++..+...+...+....+.+|+.++++.|+|.+...
T Consensus 394 iL~~G~~lVl~~~----------lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~--- 460 (709)
T COG2274 394 ILWFGAILVLEGE----------LTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK--- 460 (709)
T ss_pred HHHHHHHHHhcCC----------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc---
Confidence 5566555443221 2345555443 34667777778888889999999999999999988754321
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001189 733 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 812 (1128)
Q Consensus 733 ~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~ 812 (1128)
.+...++..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++||.|++.+
T Consensus 461 ~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i 540 (709)
T COG2274 461 TLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI 540 (709)
T ss_pred ccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc
Confidence 12344567799999999999998877899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhhceEEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 813 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 813 ~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
++..+|++|||||||+.+|+|||+||+.+... .+++++.+|++.++++++|.++|.||+|.++|+|.+|||||||||+|
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999998765 47799999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
||||+++|+|||||||||+||+++++.|.+.|.+...++|+|+||||++++++||||+||++|+|+++|+|+||++. ++
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g 699 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GG 699 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 67
Q ss_pred chHHHHHh
Q 001189 972 SFSKMVQS 979 (1128)
Q Consensus 972 ~~~~~~~~ 979 (1128)
.|+++++.
T Consensus 700 ~y~~l~~~ 707 (709)
T COG2274 700 LYARLYQQ 707 (709)
T ss_pred hHHHHHhc
Confidence 77777653
No 11
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.8e-72 Score=690.14 Aligned_cols=548 Identities=20% Similarity=0.255 Sum_probs=405.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc-C-CCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSSL-K-THG-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 502 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~-~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 502 (1128)
.+++.++...+....++.+....+.... . ... ...+..+++++.++..++.+++.++....+.+...+++.++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 106 (588)
T PRK11174 27 SILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKL 106 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555556666555543211 1 111 112233344445566677788888888899999999999999999
Q ss_pred HcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 503 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 582 (1128)
Q Consensus 503 l~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 582 (1128)
++.|..||+++++|++++|+++|++.++..+...+..++..++..+..++++..+++...++++.++++.+.+...+.+.
T Consensus 107 l~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~ 186 (588)
T PRK11174 107 QQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMG 186 (588)
T ss_pred HhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988776666666666555555555555565544443333222222223333333
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001189 583 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL--- 659 (1128)
Q Consensus 583 ~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~--- 659 (1128)
.++..+......+.+.+.+.|.++|+++||+|+.++++.+++.+..+...+..........+......++..+...+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (588)
T PRK11174 187 AADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAV 266 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445567788999999999999999999998888877666655444333222222222222222211111
Q ss_pred HHHHHHHhcCCcchh-hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQ-EAFA-STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 737 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~-~~~~-~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~ 737 (1128)
...+.+...-+.+.. ..+. ...-..+.+...+..++..+...+........+.+|+.++++.+++.+.. ...+. .
T Consensus 267 ~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~-~ 343 (588)
T PRK11174 267 YFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ--GEKEL-A 343 (588)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--Ccccc-C
Confidence 111111111111100 0001 11111123334456677777777778888899999999999876543211 11000 1
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh
Q 001189 738 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
.+..+.|+|+||+|.|.++ +++|+|+||+|+|||++|||||||||||||+++|+|++ |++|+|.+||+|+++++++++
T Consensus 344 ~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~l 421 (588)
T PRK11174 344 SNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESW 421 (588)
T ss_pred CCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHH
Confidence 1123569999999877644 57999999999999999999999999999999999999 999999999999999999999
Q ss_pred hhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 818 RKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
|++|+||||+|++|++||||||.++. +.++++++++++.++++++++++|.|+||.+||+|.+||||||||++||||++
T Consensus 422 r~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll 501 (588)
T PRK11174 422 RKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL 501 (588)
T ss_pred HhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999874 57999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHH
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 976 (1128)
++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+||+++. +.|+++
T Consensus 502 ~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~-~~y~~l 580 (588)
T PRK11174 502 QPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG-GLFATL 580 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcc-hHHHHH
Confidence 9999999999999999999999999999988899999999999999999999999999999999999999864 467777
Q ss_pred HHh
Q 001189 977 VQS 979 (1128)
Q Consensus 977 ~~~ 979 (1128)
+..
T Consensus 581 ~~~ 583 (588)
T PRK11174 581 LAH 583 (588)
T ss_pred HHH
Confidence 654
No 12
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.2e-71 Score=685.35 Aligned_cols=539 Identities=31% Similarity=0.435 Sum_probs=408.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 001189 429 CYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMV 508 (1128)
Q Consensus 429 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ 508 (1128)
+.++...+....+.++....+...........+...++++.++..++.+...++....+.+...+++.++++++++.|+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~ 101 (567)
T COG1132 22 LLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLS 101 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33344445555555555444433211111222333444444556666677777777777999999999999999999999
Q ss_pred ccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 509 FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKR 588 (1128)
Q Consensus 509 ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 588 (1128)
+|+++++|++++|+++|++.++..+......+...+..+++.++++....+...++++..++++......+.+..++..+
T Consensus 102 ~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (567)
T COG1132 102 FFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSR 181 (567)
T ss_pred HhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988776654444434555555555666665544433333222222222233323355555
Q ss_pred HHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 001189 589 LDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL----AIRLEIVGGLMIWLTATFA 664 (1128)
Q Consensus 589 ~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl----~~~l~~~~~~~~~~~~~~~ 664 (1128)
......+.+.+.+.|.++|++++|+|+.++...+.+.+..+...+..........+. .+...+...+++++++ +.
T Consensus 182 ~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 260 (567)
T COG1132 182 RVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGG-FL 260 (567)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 555666788899999999999999999998776666555554444432222222222 2222222222222222 22
Q ss_pred HHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccE
Q 001189 665 VVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 744 (1128)
Q Consensus 665 v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i 744 (1128)
+.. +.. ..+.+...+.+...+..++..+............+.+|+.++++.+++... ... ...+..+.|
T Consensus 261 ~~~-~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~--~~~~~~~~I 329 (567)
T COG1132 261 VLS-GSL-----TVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPD--PLKDTIGSI 329 (567)
T ss_pred HHc-CCC-----CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCC--CCCCCCCeE
Confidence 221 111 123344555666667777777778888888899999999999987554211 111 023445779
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+|+||+|+|+++ +++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|.+||+||++++...+|++|++|
T Consensus 330 ~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 330 EFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 999999999753 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 825 PQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 825 ~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
||||.||++||++||.++.+ .+|++++++++.++++++++++|+||||.+||+|.+||||||||++||||++++|+|||
T Consensus 409 ~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI 488 (567)
T COG1132 409 SQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI 488 (567)
T ss_pred cccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999998876 69999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhhc
Q 001189 904 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 981 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 981 (1128)
||||||+||++|++.|++.+++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||+++ ++.|++++..++
T Consensus 489 LDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 489 LDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred EeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 99999999999999999999988888999999999999999999999999999999999999998 678999987643
No 13
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=5.6e-70 Score=684.40 Aligned_cols=540 Identities=24% Similarity=0.302 Sum_probs=408.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 424 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GP-LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 501 (1128)
Q Consensus 424 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 501 (1128)
...+++.++...+....++++....|....... .. ..+...++++.++..++.+++.+.....+.+...+++..++++
T Consensus 139 ~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (686)
T TIGR03797 139 LAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDR 218 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666666654322111 11 1223344455566778888899999999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 502 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581 (1128)
Q Consensus 502 ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 581 (1128)
+++.|+.||++.+.|++++|++ |++.+...+...+...+..+...+..++++...++...++++.++++++.+..+..+
T Consensus 219 ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~ 297 (686)
T TIGR03797 219 LLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGL 297 (686)
T ss_pred HHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 788887766554444444444444444445555554444433333333333333333
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 001189 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMIW 658 (1128)
Q Consensus 582 ~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~~~ 658 (1128)
..+...+......+...+.+.|+++|+.+||+++.++++...+.+..+...+..........|.......+ ..++++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il 377 (686)
T TIGR03797 298 LQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALF 377 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334455678899999999999999999998888877777666655554444444444333322 222222
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCC
Q 001189 659 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 738 (1128)
Q Consensus 659 ~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~ 738 (1128)
+++.+.+. .+..+ .+.+-.+..+...+..++..+...+........+.+|+.++++.++|.+.. ... ..
T Consensus 378 ~~g~~lv~-~g~lt-----iG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~~--~~ 446 (686)
T TIGR03797 378 AAAISLLG-GAGLS-----LGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---KTD--PG 446 (686)
T ss_pred HHHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---cCC--CC
Confidence 22333232 22221 111222233344555667777777788888999999999998876653211 111 11
Q ss_pred CCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 739 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 739 p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++++++|
T Consensus 447 ~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 526 (686)
T TIGR03797 447 KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVR 526 (686)
T ss_pred CCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHH
Confidence 23467999999999976556899999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
++|+||||||.+|++||+|||.++.+.++++++++++.++++++++++|.|+||.+|++|.+||||||||++||||++++
T Consensus 527 ~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 527 RQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred hccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998766889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
|+|||||||||+||+++++.+.+.|++. ++|+|+||||++++..||+|+||++|+|++.|+|+||+++ ++.|++++.
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~ 683 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLAR 683 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 9999999999999999999999999885 6899999999999999999999999999999999999986 467777665
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.4e-70 Score=684.95 Aligned_cols=541 Identities=24% Similarity=0.358 Sum_probs=415.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 423 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL--FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 500 (1128)
Q Consensus 423 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 500 (1128)
+...+++.++...+....+++.....|.......... ....+++++.++..++..++.+.+...+.+...+++.++++
T Consensus 163 l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~ 242 (711)
T TIGR00958 163 LISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFR 242 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666667666666654322111111 12233444555666777888888889999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 501 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 580 (1128)
Q Consensus 501 ~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 580 (1128)
++++.|+.||++++.|++++|+++|++.++..+...+..++..+..++..++++..+++...++++..+++.+.+...+.
T Consensus 243 ~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~ 322 (711)
T TIGR00958 243 SLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFG 322 (711)
T ss_pred HHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877777777777777777776666666555444333333333444444
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 001189 581 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG---ANRWLAIRLEIVGGLMI 657 (1128)
Q Consensus 581 ~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~wl~~~l~~~~~~~~ 657 (1128)
+..++..+......+...+.+.|+++|+++||+|+.++++.+++.+..+...+....... ...|....+..+..+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 402 (711)
T TIGR00958 323 KRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLV 402 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445556677899999999999999999998888777776655443332221 12233222233333333
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001189 658 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 737 (1128)
Q Consensus 658 ~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~ 737 (1128)
++++.+.+. .+..+ .+.+..++.+...+..++..+......+.....+.+|+.++++.+++.+.. .. ...
T Consensus 403 l~~g~~lv~-~g~it-----~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~--~~~ 472 (711)
T TIGR00958 403 LYYGGQLVL-TGKVS-----SGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--GT--LAP 472 (711)
T ss_pred HHHHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CC--CCC
Confidence 333333332 22221 223333455666677788888888888899999999999999876543211 11 111
Q ss_pred CCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001189 738 WPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 816 (1128)
++..+.|+|+||+|+|++. .+++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+.
T Consensus 473 ~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 473 LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552 (711)
T ss_pred CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 2345789999999999743 257999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+|++|+||||+|.+|++||||||.+.. ..+|++++++++.++++++++++|.|+||.+|++|.+||||||||++||||+
T Consensus 553 lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 553 LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred HHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999998764 4678999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHH
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 975 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 975 (1128)
+++|+|||||||||+||+++++.|++ ....+++|+|+||||++++..||+|++|++|+|+|.|+|+||+++. +.|++
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~-~~y~~ 709 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKH 709 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCC-CchHh
Confidence 99999999999999999999999999 3334789999999999999999999999999999999999999865 46665
Q ss_pred H
Q 001189 976 M 976 (1128)
Q Consensus 976 ~ 976 (1128)
+
T Consensus 710 l 710 (711)
T TIGR00958 710 L 710 (711)
T ss_pred c
Confidence 4
No 15
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.4e-69 Score=668.61 Aligned_cols=543 Identities=25% Similarity=0.377 Sum_probs=409.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC-ChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 424 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPLF---YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 499 (1128)
Q Consensus 424 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~~---~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 499 (1128)
.+.+++.++...+....+.++....|....... .... +..+++++.++..++.+.+.++....+.+...+++..++
T Consensus 26 ~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 105 (592)
T PRK10790 26 GLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVM 105 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666677777776664321111 1111 112233344455666777888888888999999999999
Q ss_pred HHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 500 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 579 (1128)
Q Consensus 500 ~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 579 (1128)
+++++.|..+|++.+.|++++|+++|++.++..+...+..++..+..++..++++.++++...++++..+++.......+
T Consensus 106 ~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~ 185 (592)
T PRK10790 106 DAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIY 185 (592)
T ss_pred HHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998777766666666666666666565555544433222222222222223
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 001189 580 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL-AIRLEIVGGLMIW 658 (1128)
Q Consensus 580 ~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl-~~~l~~~~~~~~~ 658 (1128)
.+..+...+......+....++.|.++|+.+||+|+.++++.+.+.+..+...+..........+. .....++..++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (592)
T PRK10790 186 QRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILC 265 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333445667788999999999999999999888887766655444433322222211 1112222111111
Q ss_pred HHH-HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001189 659 LTA-TFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 737 (1128)
Q Consensus 659 ~~~-~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~ 737 (1128)
++. .+.....+..+ .+.+..++.+...+..++..+...+...+....+.+|+.++++.+++.... . ..
T Consensus 266 ~~~~~~~~~~~g~is-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~---~~ 334 (592)
T PRK10790 266 GLLMLFGFSASGTIE-----VGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN---D---DR 334 (592)
T ss_pred HHHHHHHHHHCCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC---C---cc
Confidence 110 01111122211 222333444555677777888888888999999999999998765442111 1 11
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh
Q 001189 738 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
++..+.|+|+||+|+|+++ +++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.|+++++++.+
T Consensus 335 ~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 335 PLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred CCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHH
Confidence 2334679999999999753 479999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 818 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|++|+||||+|.+|++|+++||.++.+.+|++++++++.++++++++++|.|+||.++++|.+||||||||++|||||++
T Consensus 414 ~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~ 493 (592)
T PRK10790 414 RQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ 493 (592)
T ss_pred HhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887788999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|+|||||||||+||+++++.|.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+||+++. +.|+.++
T Consensus 494 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~-~~y~~l~ 572 (592)
T PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ-GRYWQMY 572 (592)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC-CHHHHHH
Confidence 999999999999999999999999999988899999999999999999999999999999999999999875 6788777
Q ss_pred Hh
Q 001189 978 QS 979 (1128)
Q Consensus 978 ~~ 979 (1128)
+.
T Consensus 573 ~~ 574 (592)
T PRK10790 573 QL 574 (592)
T ss_pred HH
Confidence 64
No 16
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.7e-69 Score=682.93 Aligned_cols=542 Identities=23% Similarity=0.324 Sum_probs=407.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 503 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 503 (1128)
.+++.++...+....++++....|......... ..+...++++.++..++.+++.++....+.+...+++..++++++
T Consensus 159 ~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 238 (710)
T TIGR03796 159 LLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHIL 238 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555556666666655432211111 122333444555677788889999999999999999999999999
Q ss_pred cCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 504 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 583 (1128)
Q Consensus 504 ~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 583 (1128)
+.|+.||++.++|++++|++.| ..+...+...+...+..+..++..++++...++...++++.+++++..+..++.+..
T Consensus 239 ~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~ 317 (710)
T TIGR03796 239 RLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRR 317 (710)
T ss_pred cCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 566665554444444455555555555555555554444443333333344444444
Q ss_pred HHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 001189 584 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG---GLMIWLT 660 (1128)
Q Consensus 584 ~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~---~~~~~~~ 660 (1128)
++..+......+...+.+.|+++|+.+||+++.++.+.+++.+......+..........+.......+. .++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~ 397 (710)
T TIGR03796 318 VDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVV 397 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445567788999999999999999999988887776665555444333333333333322222 2222222
Q ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCC--C-CCCCC
Q 001189 661 ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES--N-RPPPG 737 (1128)
Q Consensus 661 ~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~--~-~~~~~ 737 (1128)
+.+.+. .+..+ .+.+..++.+...+..++..+...+........+.+|+.++++.++|.+..... . ...+.
T Consensus 398 g~~~v~-~g~lt-----~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~ 471 (710)
T TIGR03796 398 GGLRVM-EGQLT-----IGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPS 471 (710)
T ss_pred HHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccC
Confidence 223232 22221 122222334444556667777777788888999999999999877664321100 0 00111
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh
Q 001189 738 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
++..+.|+++||+|+|++..+++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||+|+++++++++
T Consensus 472 ~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 472 PRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred CCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence 23457899999999998655689999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 818 RKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
|++|+||||+|.+|++||||||.++. +.++++++++++.+++++++.++|.|+||.++|+|.+||||||||++||||++
T Consensus 552 r~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred HhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998765 46899999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHH
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 976 (1128)
++|+|||||||||+||+++++.|.+.|++ .++|+|+||||++++..||||++|++|+|++.|+|+||+++. +.|+++
T Consensus 632 ~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~-~~y~~l 708 (710)
T TIGR03796 632 RNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVG-GAYARL 708 (710)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcC-CcHHHH
Confidence 99999999999999999999999999987 589999999999999999999999999999999999999864 567765
Q ss_pred H
Q 001189 977 V 977 (1128)
Q Consensus 977 ~ 977 (1128)
+
T Consensus 709 ~ 709 (710)
T TIGR03796 709 I 709 (710)
T ss_pred h
Confidence 4
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.6e-69 Score=680.62 Aligned_cols=541 Identities=21% Similarity=0.323 Sum_probs=406.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 425 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-PL-FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 502 (1128)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 502 (1128)
..+++.++...+....++++..+.|........ .. .+...++++.+...++.+++.++....+.+...+++..+++++
T Consensus 160 ~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 239 (708)
T TIGR01193 160 NIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHL 239 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666777777777654322111 11 1222334445556677888888999999999999999999999
Q ss_pred HcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 503 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 582 (1128)
Q Consensus 503 l~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 582 (1128)
++.|+.||++++.|++++|++ |...+...+.......+..+..++..++++.++++...++++..+++++++...+.+.
T Consensus 240 l~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~ 318 (708)
T TIGR01193 240 FELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRT 318 (708)
T ss_pred HcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 8877766554443333333333444444444455544443333333333334444444
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 001189 583 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW---LAIRLEIVGGLMIWL 659 (1128)
Q Consensus 583 ~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w---l~~~l~~~~~~~~~~ 659 (1128)
.++..+......+...+.+.|+++|+.+||+|+.++++.+++.+......+..+.......+ +...+..+..+++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~ 398 (708)
T TIGR01193 319 FNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILW 398 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555667788999999999999999999988877766665544443332222222 222222233333333
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
++.+.+.. +..+ .+.+..+..+...+..++..+............+.+|+.++++.++|.+... .....++
T Consensus 399 ~g~~lv~~-g~ls-----~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~ 469 (708)
T TIGR01193 399 TGAYLVMR-GKLT-----LGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK---KRTELNN 469 (708)
T ss_pred HHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc---cccCCCC
Confidence 33333332 2221 1122223344445566677777777888888999999999998776643211 1111234
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
..+.|+++||+|+|+++ +++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|++||+|+++++++++|+
T Consensus 470 ~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 548 (708)
T TIGR01193 470 LNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548 (708)
T ss_pred CCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHH
Confidence 45789999999999743 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHhhccccC--CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPF--SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~--~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|+||||+|.+|++||+|||.++ ...++++++++++.++++++++++|.||||.++++|.+||||||||++||||+++
T Consensus 549 ~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred heEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999976 3568999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|+|||||||||+||+++++.+++.|++. +++|+|+||||++++..||+|++|++|++++.|+|+||+++. +.|++++
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~-~~y~~l~ 706 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN-GFYASLI 706 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcC-CcHHHHh
Confidence 99999999999999999999999999875 789999999999999999999999999999999999999864 6777765
Q ss_pred H
Q 001189 978 Q 978 (1128)
Q Consensus 978 ~ 978 (1128)
+
T Consensus 707 ~ 707 (708)
T TIGR01193 707 H 707 (708)
T ss_pred h
Confidence 3
No 18
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.9e-69 Score=659.86 Aligned_cols=496 Identities=24% Similarity=0.336 Sum_probs=389.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHH
Q 001189 467 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 546 (1128)
Q Consensus 467 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~ 546 (1128)
++.++..++.++..++....+.+...+++.++++++++.|+.+|++.+.|++++|+++|++.++..+...+..++..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~ 147 (574)
T PRK11160 68 GAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVV 147 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888888999999999999999999999999999999999999999999998877766676666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHH
Q 001189 547 LLSTFVLIGIVSTMSLWAIMPLL-LLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 625 (1128)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~ 625 (1128)
++..+++++++++...++++.++ +++.....++.+..+...+......+.+.+.+.|.++|++++|+|+.++++.+++.
T Consensus 148 ~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~ 227 (574)
T PRK11160 148 ILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLE 227 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHH
Confidence 66666666666665444332222 22222223333333444444455566788899999999999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCcchhhhHHHHHHHHHHH----HHHHHHHHHHH
Q 001189 626 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW---LTATFAVVQNGSAENQEAFASTMGLLLSY----ALNITSLLTAV 698 (1128)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~g~~l~~----~~~~~~~~~~~ 698 (1128)
+..+...+..........+......++..+... +++.+.+ .+.. .+|.++++ ......++.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~--~g~~--------t~g~l~a~~~~~~~~~~~~~~~l 297 (574)
T PRK11160 228 QTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV--GGNA--------QPGALIALFVFAALAAFEALMPV 297 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccc--------chhHHHHHHHHHHHHHHHHHHHH
Confidence 777766555544433333333333333222221 1111111 1211 12222221 12223455666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEEC
Q 001189 699 LRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVG 778 (1128)
Q Consensus 699 ~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG 778 (1128)
............+.+|+.++++.+++.+... ... ..+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||+|
T Consensus 298 ~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~--~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG 373 (574)
T PRK11160 298 AGAFQHLGQVIASARRINEITEQKPEVTFPT--TST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLG 373 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc--ccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEEC
Confidence 6667777888999999999988765422110 111 112346799999999997644579999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHh
Q 001189 779 RTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERA 857 (1128)
Q Consensus 779 ~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~ 857 (1128)
|||||||||+++|+|+++|++|+|.+||+|+++++..++|++|+||||+|.+|++|++|||.++. +.++++++++++.+
T Consensus 374 ~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~ 453 (574)
T PRK11160 374 RTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQV 453 (574)
T ss_pred CCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998764 46899999999999
Q ss_pred cHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeec
Q 001189 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 937 (1128)
Q Consensus 858 ~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH 937 (1128)
++++++++ |.||||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.|++.|++..+++|+|+|||
T Consensus 454 ~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitH 532 (574)
T PRK11160 454 GLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITH 532 (574)
T ss_pred CCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred CchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 938 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 938 ~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
|++++..||+|++|++|++++.|+|+||+++. +.|+++++
T Consensus 533 r~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-g~y~~l~~ 572 (574)
T PRK11160 533 RLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ-GRYYQLKQ 572 (574)
T ss_pred ChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC-cHHHHHHh
Confidence 99999999999999999999999999999864 57777764
No 19
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-69 Score=610.01 Aligned_cols=499 Identities=21% Similarity=0.321 Sum_probs=396.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHH
Q 001189 470 FGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLS 549 (1128)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~ 549 (1128)
++..+..++.-+.......+.-..+|.++|+++...+..-..+...|+++||+..|++.+|+..-..+..+...+..+..
T Consensus 69 I~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~ 148 (573)
T COG4987 69 ILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAV 148 (573)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHH
Confidence 33444445555555666777888999999999999999999999999999999999999998766666555555555555
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHH
Q 001189 550 TFVLIGIVSTMSLWA-IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSM 628 (1128)
Q Consensus 550 ~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~ 628 (1128)
+.+..+++++...+. .+.+++....+...+++..+...+.....+..+.+++.+++.|...++.||..+.+.+...+..
T Consensus 149 ~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e 228 (573)
T COG4987 149 VTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATE 228 (573)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHH
Confidence 555555555433332 2223333334444445555555555566778899999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001189 629 DKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVL-RLASLAEN 707 (1128)
Q Consensus 629 ~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-~~~~~~e~ 707 (1128)
+...+..........|..+.+.++.++++.....+.....+ .+....-...+++++. ......+.++. ........
T Consensus 229 ~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~-~G~~~~~~aa~~ll~~--f~~~eaf~~L~~~A~~~lgq 305 (573)
T COG4987 229 ASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVG-AGALAQPGAALALLVI--FAALEAFEPLAPGAFQHLGQ 305 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CCCcchhHHHHHHHHH--HHHHHHHhhhcchhHHHhhH
Confidence 88888888888888888888887776665533222222111 1111111112222221 22333344443 34456677
Q ss_pred HHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCc-cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHH
Q 001189 708 SLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG-SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 786 (1128)
Q Consensus 708 ~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g-~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKST 786 (1128)
...|..|+.++.+.++|.... +. ..+..+ .++++||+|+|+++.+++|+|+||++++||+|||+|||||||||
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~-~~-----~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFP-DE-----QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred HHHHHHHHhhhccCCcccCCC-cc-----ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 788999999888766654322 11 111112 69999999999988778999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHH
Q 001189 787 MLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRR 865 (1128)
Q Consensus 787 ll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~ 865 (1128)
++++|.|.++|++|+|.++|.+++.++.+++|+.|++++|.+.+|++|+|+||...+ +.+|+++++++++++++++++.
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998654 4699999999999999999999
Q ss_pred ccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhc
Q 001189 866 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 945 (1128)
Q Consensus 866 lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~ 945 (1128)
.|.||+|++||+|..|||||||||+|||+|+++.+++||||||.|||+.|++.|.+.|.+..+++|+|+||||+..++.|
T Consensus 460 ~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~ 539 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM 539 (573)
T ss_pred ChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 946 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 946 D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
|||+||++|+++|+|+|.+|+++ .+.|+++.+
T Consensus 540 drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 540 DRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred CEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 99999999999999999999985 467877764
No 20
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.1e-68 Score=661.90 Aligned_cols=502 Identities=24% Similarity=0.354 Sum_probs=401.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHH
Q 001189 466 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVS 545 (1128)
Q Consensus 466 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~ 545 (1128)
+++.++..++.+++.+.....+.+....++..+++++++.|..+|++.+.|++++|+++|++.+...+...+..++..++
T Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~ 151 (582)
T PRK11176 72 IGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA 151 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777788888888999999999999999999999999999999999999999998777666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHH
Q 001189 546 QLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 625 (1128)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~ 625 (1128)
.++..++++.++++...++++.++++.+++.....+..++..+..........+.+.|.++|+.+||+|+.++.+.+++.
T Consensus 152 ~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~ 231 (582)
T PRK11176 152 SIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD 231 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHH
Confidence 66666666666666554444433333333343444444444444445566778899999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 626 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLM---IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLA 702 (1128)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 702 (1128)
+..+...+..........+......++..+. +++++.+.+.. +..+ .+.+..++.+...+..++..+...+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~-g~is-----~g~~~~~~~~~~~~~~pl~~l~~~~ 305 (582)
T PRK11176 232 KVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM-DTLT-----AGTITVVFSSMIALMRPLKSLTNVN 305 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766655544444444444433333222 22222222222 2221 2233334555556677777888888
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCC
Q 001189 703 SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 782 (1128)
Q Consensus 703 ~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~Gs 782 (1128)
........+.+|+.++.+.+++.+.. .. ...+..+.|+++||+|+|+++.+++|+|+||+|+|||++||+|+|||
T Consensus 306 ~~~~~~~~~~~ri~~~~~~~~~~~~~---~~--~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGs 380 (582)
T PRK11176 306 AQFQRGMAACQTLFAILDLEQEKDEG---KR--VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGS 380 (582)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCC---Cc--CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCC
Confidence 88888899999999998766543211 11 11233457999999999976556899999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC--CCCHHHHHHHHHHhcHH
Q 001189 783 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLK 860 (1128)
Q Consensus 783 GKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~ 860 (1128)
|||||+++|+|+++|++|+|++||+|+++++.+++|++|+||||+|.+|++||++||.++. ..+|++++++++.++++
T Consensus 381 GKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~ 460 (582)
T PRK11176 381 GKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAM 460 (582)
T ss_pred CHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcH
Confidence 9999999999999999999999999999999999999999999999999999999998753 36899999999999999
Q ss_pred HHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCch
Q 001189 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 940 (1128)
Q Consensus 861 ~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~ 940 (1128)
++++++|.|+||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++
T Consensus 461 ~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~ 540 (582)
T PRK11176 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_pred HHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999878899999999999
Q ss_pred hhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 941 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 941 ~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
.+..||+|++|++|+++|.|+|++|+++. +.|+.++..
T Consensus 541 ~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~-~~y~~l~~~ 578 (582)
T PRK11176 541 TIEKADEILVVEDGEIVERGTHAELLAQN-GVYAQLHKM 578 (582)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHhCC-ChHHHHHHH
Confidence 99999999999999999999999999875 578877653
No 21
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7.9e-71 Score=638.59 Aligned_cols=464 Identities=26% Similarity=0.414 Sum_probs=352.9
Q ss_pred cEEEEeEEEEeCCCCCC-CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC----CCCcee------------
Q 001189 119 AISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV----SDASAV------------ 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~-~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~----~g~~~~------------ 181 (1128)
.++++|++..|...++. ++++||||++.+||++||||+|||||||+.++|.|++++. +|.+..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 68999999999755332 5999999999999999999999999999999999999876 343211
Q ss_pred ---ec-CcEEEEecCCC-CCc--ccHHHHHhc----CCCCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCC
Q 001189 182 ---IR-GTVAYVPQVSW-IFN--ATVRDNILF----GSAFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 246 (1128)
Q Consensus 182 ---~~-~~i~~v~Q~~~-l~~--~Tv~eni~~----g~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~L 246 (1128)
+| +.|+|++|+|+ .+| .||.+-|.- ....+ .++..+.++..++.+.... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 12 35999999986 344 477766642 22111 2334455666666554433 1223689
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeCCeEee
Q 001189 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKE 324 (1128)
Q Consensus 247 SGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 324 (1128)
|||||||+.||+||..+|++||+||||.+||+.+..+|.+.+.... ..|.++|+||||+..+.+ ||||+||.+|++++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998665543 359999999999999875 89999999999999
Q ss_pred ecChhHHhhcch-HHHH-HHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhc
Q 001189 325 EGTFEDLSNNGE-LFQK-LMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERET 402 (1128)
Q Consensus 325 ~g~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1128)
.|+.+++.++.. .|.. ++.. .|.
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a--------------------------------~p~----------------------- 260 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAA--------------------------------VPR----------------------- 260 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhh--------------------------------CCC-----------------------
Confidence 999988865421 0000 0000 000
Q ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 403 GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW 482 (1128)
Q Consensus 403 g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 482 (1128)
T Consensus 261 -------------------------------------------------------------------------------- 260 (539)
T COG1123 261 -------------------------------------------------------------------------------- 260 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 483 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 562 (1128)
Q Consensus 483 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1128)
++
T Consensus 261 ----------------------------------------------~~-------------------------------- 262 (539)
T COG1123 261 ----------------------------------------------LG-------------------------------- 262 (539)
T ss_pred ----------------------------------------------cc--------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 563 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN 642 (1128)
Q Consensus 563 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1128)
..
T Consensus 263 ----------------------------~~-------------------------------------------------- 264 (539)
T COG1123 263 ----------------------------DE-------------------------------------------------- 264 (539)
T ss_pred ----------------------------cc--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001189 643 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 722 (1128)
Q Consensus 643 ~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~ 722 (1128)
.+ ...+
T Consensus 265 ----------------------------------------------------------------------~~----~~~~ 270 (539)
T COG1123 265 ----------------------------------------------------------------------KI----IRLP 270 (539)
T ss_pred ----------------------------------------------------------------------cc----cccc
Confidence 00 0000
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEeCC---------CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 723 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 723 ~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~---------~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
...+ . +....++++|++++|.. ....+++||||+|++||++||||+||||||||.++|+|
T Consensus 271 ~~~~--------~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 271 RRGP--------L---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred cccc--------c---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 0000 0 01124889999999973 12468999999999999999999999999999999999
Q ss_pred CCCCCCceEEECCEe--cCCCChHHhhhceEEEcCCCc--ccc-ccHhhccc-cC---CCC----CHHHHHHHHHHhcHH
Q 001189 794 IVELERGRILIDGFD--IAKFGLMDLRKILGIIPQSPV--LFS-GTVRFNLD-PF---SEH----SDADLWEALERAHLK 860 (1128)
Q Consensus 794 ~~~p~~G~I~i~g~~--i~~~~~~~~r~~i~~v~Q~~~--lf~-~Tv~~nl~-~~---~~~----~~~~i~~~l~~~~l~ 860 (1128)
+++|++|+|.++|.| .+.-....+|+++-+|+|||. |-. .||+++|. +. ... ..+.+.+.++.+++.
T Consensus 340 L~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~ 419 (539)
T COG1123 340 LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP 419 (539)
T ss_pred CCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCC
Confidence 999999999999977 332234457789999999996 333 49998874 21 111 123456666776665
Q ss_pred H-HHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeec
Q 001189 861 D-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAH 937 (1128)
Q Consensus 861 ~-~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH 937 (1128)
. ++.+. ...||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|.++.+ +.|.|+|||
T Consensus 420 ~~~l~ry-----------P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISH 488 (539)
T COG1123 420 PEFLDRY-----------PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488 (539)
T ss_pred HHHHhcC-----------chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeC
Confidence 3 34444 468999999999999999999999999999999999999999999988754 689999999
Q ss_pred Cchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 938 RLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 938 ~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
|+..++. ||||+||++|+|+|.|+.+++.+.+...|.+...
T Consensus 489 Dl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 489 DLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred CHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHH
Confidence 9999999 9999999999999999999999887766765443
No 22
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-68 Score=616.10 Aligned_cols=510 Identities=24% Similarity=0.323 Sum_probs=408.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHH
Q 001189 461 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 540 (1128)
Q Consensus 461 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~ 540 (1128)
+...++++.++..++...+....+..+.+....+|..+++++.+.+..+-...|+|++...++..++.++.++..++.++
T Consensus 42 ~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~ 121 (559)
T COG4988 42 LLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQM 121 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556667777777788888888889999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHH
Q 001189 541 MGQVSQLLSTFVLIGIVSTMSLW---AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 617 (1128)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~ 617 (1128)
+...+..+..++.+++..+...+ +.+|++++++++.- ...+...+..-.+-..+.++|.+.++|+.|+|+|+..
T Consensus 122 ~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg---~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~ 198 (559)
T COG4988 122 FLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVG---LAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRT 198 (559)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhccc
Confidence 88877777777777766654433 44555555443322 2222222223334456788999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 001189 618 DRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 697 (1128)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 697 (1128)
+...+...+......+.+..........+..++++..+-+.+++.+....--..+....+.+.+. +..+.-+..++..
T Consensus 199 ~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~--LiLAPEff~PlR~ 276 (559)
T COG4988 199 EATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFV--LILAPEFFQPLRD 276 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHH--HHHhHHHHHHHHH
Confidence 88888777777777777766666666677778887766666655544321100011122222222 2223344556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEE
Q 001189 698 VLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIV 777 (1128)
Q Consensus 698 ~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~iv 777 (1128)
+-..+....+...+.+.+..+.+.|.+.+...+ .....|.....++++|++++|++++ ++++|+||+++||+++|||
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~--~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talv 353 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSGE--KAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALV 353 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc--ccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEE
Confidence 666666666777788888888877665432211 1122232334566779999998664 8999999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCC-CCHHHHHHHHHH
Q 001189 778 GRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALER 856 (1128)
Q Consensus 778 G~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~ 856 (1128)
|+||||||||+++|+|+++|++|+|.+||+++++++++.+|+++++|||+|.+|++|+||||.++.. .+|+++.+++++
T Consensus 354 G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~ 433 (559)
T COG4988 354 GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQ 433 (559)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998775 689999999999
Q ss_pred hcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEee
Q 001189 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 936 (1128)
Q Consensus 857 ~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vt 936 (1128)
+++.++++. |.|+||.+||+|.+|||||+|||+||||++++++++|+||||++||.+|++.|.+.|.+..+++|||+||
T Consensus 434 a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~it 512 (559)
T COG4988 434 AGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT 512 (559)
T ss_pred hcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEE
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhh
Q 001189 937 HRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 937 H~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
||++.+.+||+|+||++|++++.|+|++|.++. +.|+.|+.+.
T Consensus 513 Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~-~~y~~l~~~q 555 (559)
T COG4988 513 HRLEDAADADRIVVLDNGRLVEQGTHEELSEKQ-GLYANLLKQQ 555 (559)
T ss_pred cChHHHhcCCEEEEecCCceeccCCHHHHhhcC-cHHHHHHHHH
Confidence 999999999999999999999999999999864 5788887653
No 23
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.1e-68 Score=670.98 Aligned_cols=531 Identities=24% Similarity=0.358 Sum_probs=401.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCC-ChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPLF-YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 503 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 503 (1128)
.+++.++...+....++++....|....... .... +..+++++.++..++.+++.++....+.+...+++..++++++
T Consensus 152 ~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 231 (694)
T TIGR03375 152 VLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVL 231 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555566666666666654322111 1111 2223334455567778888999999999999999999999999
Q ss_pred cCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 504 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 583 (1128)
Q Consensus 504 ~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 583 (1128)
+.|+.| ++.++|++++|+ +|++.+...+.......+..+..++..++++.++++...++.+..+++++++..++.+..
T Consensus 232 ~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 309 (694)
T TIGR03375 232 GLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPL 309 (694)
T ss_pred CCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 788999999999 799999877655444444444444444444555555444433333333333333444444
Q ss_pred HHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 001189 584 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN----RWLAIRLEIVGGLMIWL 659 (1128)
Q Consensus 584 ~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~wl~~~l~~~~~~~~~~ 659 (1128)
++..+......+...+.+.|+++|+++||+|+.++.+.+++.+..+...+......... .+..+...+...+++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 389 (694)
T TIGR03375 310 SRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVV 389 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556677889999999999999999999888877766665544443332222 22222222222222222
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
+.+.+.. +..+ .+.+..++.+...+..++..+...+........+.+|+.++++.++|.+... ......+
T Consensus 390 -g~~~v~~-g~ls-----~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~---~~~~~~~ 459 (694)
T TIGR03375 390 -GVYLISD-GELT-----MGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT---RFLHRPR 459 (694)
T ss_pred -HHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC---CCCCCCC
Confidence 2333322 2221 1222223344455566777777778888889999999999998776533211 1111112
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
..+.|+|+||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|.+||+|+++++++++|+
T Consensus 460 ~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 460 LQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred ccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHh
Confidence 34679999999999765567999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
+|+||||+|.+|++||+|||.++.+ .++++++++++.++++++++++|.|+||.+|++|.+||||||||++||||++++
T Consensus 540 ~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 540 NIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred ccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998764 789999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+||+++
T Consensus 620 p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 620 PPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999999999999998889999999999999999999999999999999999999864
No 24
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-70 Score=679.08 Aligned_cols=482 Identities=22% Similarity=0.319 Sum_probs=348.7
Q ss_pred CcEEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------
Q 001189 118 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 181 (1128)
+.++++|++++|+... ..++|+||||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 4699999999996322 347999999999999999999999999999999999999998764321
Q ss_pred ----------ec-CcEEEEecCC--CCC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccc
Q 001189 182 ----------IR-GTVAYVPQVS--WIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEI 239 (1128)
Q Consensus 182 ----------~~-~~i~~v~Q~~--~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~v 239 (1128)
.+ ..||||+|+| .++ ..||+|||.++. ..+. +++.++++..++.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 11 3699999998 465 479999998752 1222 234445555555310 0112
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEE
Q 001189 240 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILV 317 (1128)
Q Consensus 240 g~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l 317 (1128)
.....+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.+..... .|+|+|+|||+++++. .||+|++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 334468999999999999999999999999999999999999999886544433 3899999999999876 58999999
Q ss_pred eCCeEeeecChhHHhhcch-HHH-HHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhh
Q 001189 318 HEGMVKEEGTFEDLSNNGE-LFQ-KLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLI 395 (1128)
Q Consensus 318 ~~G~i~~~g~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1128)
++|++++.|+++++..... .|. .+.. ..+..
T Consensus 243 ~~G~i~~~g~~~~~~~~~~~~~~~~l~~--------------------------------~~~~~--------------- 275 (623)
T PRK10261 243 YQGEAVETGSVEQIFHAPQHPYTRALLA--------------------------------AVPQL--------------- 275 (623)
T ss_pred eCCeecccCCHHHhhcCCCChhhhhhhh--------------------------------ccCcc---------------
Confidence 9999999888776542110 000 0000 00000
Q ss_pred hhhhhhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHH
Q 001189 396 KQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLV 475 (1128)
Q Consensus 396 ~~~~~~~g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 475 (1128)
..+
T Consensus 276 -------------------------------------------------~~~---------------------------- 278 (623)
T PRK10261 276 -------------------------------------------------GAM---------------------------- 278 (623)
T ss_pred -------------------------------------------------ccc----------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001189 476 TLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 555 (1128)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~ 555 (1128)
.|+ .. +
T Consensus 279 ---------------------------------------~~~-------~~-------~--------------------- 284 (623)
T PRK10261 279 ---------------------------------------KGL-------DY-------P--------------------- 284 (623)
T ss_pred ---------------------------------------ccc-------cC-------C---------------------
Confidence 000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001189 556 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYT 635 (1128)
Q Consensus 556 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~ 635 (1128)
.+-+..
T Consensus 285 -------------------------------------~~~~~~------------------------------------- 290 (623)
T PRK10261 285 -------------------------------------RRFPLI------------------------------------- 290 (623)
T ss_pred -------------------------------------cccccc-------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 636 LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERV 715 (1128)
Q Consensus 636 ~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri 715 (1128)
. ...++.
T Consensus 291 ----------------------------------------------------------------------~---~~~~~~ 297 (623)
T PRK10261 291 ----------------------------------------------------------------------S---LEHPAK 297 (623)
T ss_pred ----------------------------------------------------------------------c---cccccc
Confidence 0 000000
Q ss_pred HhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC---------CCCceeeeeEEEcCCcEEEEECCCCCCHHH
Q 001189 716 GNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 786 (1128)
Q Consensus 716 ~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~---------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKST 786 (1128)
..+.+.+ . ..+ +....|+++|+++.|+.. ...+|+||||+|++||++||+|+|||||||
T Consensus 298 ----~~~~~~~----~-~~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKST 365 (623)
T PRK10261 298 ----QEPPIEQ----D-TVV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKST 365 (623)
T ss_pred ----cCccccc----c-ccc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHH
Confidence 0000000 0 000 011249999999999521 136999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEECCEecCCCChH---HhhhceEEEcCCC--cccc-ccHhhccccC----CCCCH----HHHHH
Q 001189 787 MLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKILGIIPQSP--VLFS-GTVRFNLDPF----SEHSD----ADLWE 852 (1128)
Q Consensus 787 ll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~i~~v~Q~~--~lf~-~Tv~~nl~~~----~~~~~----~~i~~ 852 (1128)
|+++|+|+++|++|+|.++|.++...+.. .+|++|+||||+| .++. .||.+|+... ..... +++.+
T Consensus 366 Llk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 445 (623)
T PRK10261 366 TGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAW 445 (623)
T ss_pred HHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999999999999876543 3567899999998 3665 4999998531 11111 23334
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--Cc
Q 001189 853 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SC 930 (1128)
Q Consensus 853 ~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~ 930 (1128)
.++.+++. +........+||||||||++|||||+.+|+||||||||++||+.+.+.|.+.|+++.+ +.
T Consensus 446 ~L~~~gL~----------~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~ 515 (623)
T PRK10261 446 LLERVGLL----------PEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGI 515 (623)
T ss_pred HHHHcCCC----------HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 44444442 1223444568999999999999999999999999999999999999999999988643 68
Q ss_pred EEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchH
Q 001189 931 TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 974 (1128)
Q Consensus 931 Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 974 (1128)
|||+|||+++.+.. ||||++|++|+|++.|+++++..++...|.
T Consensus 516 tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~ 560 (623)
T PRK10261 516 AYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYT 560 (623)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHH
Confidence 99999999999987 999999999999999999999865544443
No 25
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-70 Score=674.61 Aligned_cols=508 Identities=24% Similarity=0.351 Sum_probs=400.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHH
Q 001189 458 PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFV 537 (1128)
Q Consensus 458 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~ 537 (1128)
...+.+.|..++++.++..++...++.+.+.|...++|.+.++.+||+++.|||.+..|++..|++.|++.+++.+...+
T Consensus 70 ~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKv 149 (1228)
T KOG0055|consen 70 VSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKV 149 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHH
Confidence 34566677778888888888999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHH-HHHHHHHHHHhhcccHHHHHHHHHcchHHHH
Q 001189 538 NMFMGQVSQLLSTFVLIGIVSTMSLWAIM---PLLLLFYAAYLY-YQS-TAREVKRLDSITRSPVYAQFGEALNGLSTIR 612 (1128)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~~~~-~~~-~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIr 612 (1128)
..++..+..+++.+++.++..|....+++ |++++...++.. ..+ +.++.. .-+.--+...|++.+++|+.
T Consensus 150 g~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~-----~ya~Ag~iaEe~i~~iRTV~ 224 (1228)
T KOG0055|consen 150 GNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQE-----AYAKAGSIAEEVISSIRTVY 224 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhhhh
Confidence 88888888888877777776665544433 443333222222 111 222222 22233456789999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Q 001189 613 AYKAYDRMADINGKSMDKNIRYTLVNMGA----NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYA 688 (1128)
Q Consensus 613 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~ 688 (1128)
+|+.|++..+++.+.+....+........ ..+..+.+....++.+|+++.+...... +....+.... .+
T Consensus 225 af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~--~~g~v~~v~~-----~v 297 (1228)
T KOG0055|consen 225 AFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGY--NGGDVITVFF-----SV 297 (1228)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCceEEEEEe-----eh
Confidence 99999999999999888887776544322 1222233344455566666555443111 1111110000 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCC-CCceeeeeEE
Q 001189 689 LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFT 767 (1128)
Q Consensus 689 ~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~-~~~l~~vsl~ 767 (1128)
+.....++..............|..++.+.++..+.......... .....+|.|+|+||+|+|+... .++|+|+||+
T Consensus 298 l~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~ 375 (1228)
T KOG0055|consen 298 LIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLK 375 (1228)
T ss_pred hhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEEEecCCCCCcchhhCCeEEE
Confidence 111112222223334445566788888888764433211111111 1123468999999999997542 3799999999
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCC
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHS 846 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~ 846 (1128)
|++|+.|||||||||||||++++|.|+|+|++|+|+|||.|+++++.+++|++||+|.|+|.||++||+||+.++. +.+
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat 455 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDAT 455 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876 468
Q ss_pred HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHH
Q 001189 847 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 926 (1128)
Q Consensus 847 ~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~ 926 (1128)
++++.++++.+++++++..+|.||||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.+|++|++.
T Consensus 456 ~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~ 535 (1228)
T KOG0055|consen 456 REEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA 535 (1228)
T ss_pred HHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhh
Q 001189 927 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 927 ~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
.+|+|.|+|||||++++++|+|+||++|+|+|.|+|+||++++ +.|+++++.+
T Consensus 536 ~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q 588 (1228)
T KOG0055|consen 536 SKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQ 588 (1228)
T ss_pred hcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 8999999764
No 26
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.9e-68 Score=695.96 Aligned_cols=303 Identities=17% Similarity=0.256 Sum_probs=224.8
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++|++++|+....++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ +....|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 4599999999997533479999999999999999999999999999999999999999999999999865 455678899
Q ss_pred EEEcCCCccccc-cHhhccccCC---CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~~~----i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
||+||++.++.. |++|||.++. ....++ +.+.++..++. .........|||||||||+|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~-----------~~~dk~~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-----------LYADRLAGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHH
Confidence 999999998865 9999997532 122222 33344444443 3344445689999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
||+.+|+||||||||+|||+.+++.+++.|++.. +++|||++||++++++. ||||++|++|++++.|+++++.++.+.
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~ 2163 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGD 2163 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCC
Confidence 9999999999999999999999999999999864 57999999999999988 999999999999999999999877653
Q ss_pred chHHHHHhhchhh--HH---HHHHHhhCccchhhhhhhhhhcccchhhhhhcHHHHHhhhhhhhhccccCccchhhhhhh
Q 001189 972 SFSKMVQSTGAAN--AQ---YLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVED 1046 (1128)
Q Consensus 972 ~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1046 (1128)
.|.-.++...... .. ........ ..++.. .. ..+ .....+. +......+
T Consensus 2164 g~~l~i~~~~~~~~~~~~~~~v~~~i~~------------~fp~a~--~~----e~~---~~~l~~~-----i~~~~~~~ 2217 (2272)
T TIGR01257 2164 GYIVTMKIKSPKDDLLPDLNPVEQFFQG------------NFPGSV--QR----ERH---YNMLQFQ-----VSSSSLAR 2217 (2272)
T ss_pred ceEEEEEEcCcchhhhhHHHHHHHHHhh------------cCccce--ee----ccc---cceEEEE-----eCcccHHH
Confidence 2221000000000 00 00000000 000000 00 000 0000010 01124577
Q ss_pred hhhHHhhhhhhh-hhhhhhccCCchHHHHHhhhcCcc
Q 001189 1047 QNNILKKTKDAV-VTLQGVLEGKHDKEIEESLNQHEV 1082 (1128)
Q Consensus 1047 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1128)
....||+.|..+ ++.|++++++||+||++..++...
T Consensus 2218 if~~L~~~k~~l~I~dysvsqtSLE~VFl~l~~~q~~ 2254 (2272)
T TIGR01257 2218 IFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTE 2254 (2272)
T ss_pred HHHHHHhcCCCCCeEEEEcCCCCHHHHHHHHhccccc
Confidence 888999999888 999999999999999999977543
No 27
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4e-67 Score=647.28 Aligned_cols=543 Identities=24% Similarity=0.366 Sum_probs=424.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 424 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 501 (1128)
Q Consensus 424 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 501 (1128)
++.+++.++...+....++++....+......... ..+..+++++.+...++.+++.+.....+.+....++..++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 96 (571)
T TIGR02203 17 VLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEK 96 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555556655444322111111 1223345556666777788888889999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 502 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581 (1128)
Q Consensus 502 ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 581 (1128)
+++.|..+|++.+.|++++|+++|++.++..+...+..++..+..++..++++.+.++...++++.++++......++.+
T Consensus 97 ~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~ 176 (571)
T TIGR02203 97 LLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSK 176 (571)
T ss_pred HHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888777777777777777777777777776666555555554545555555
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 001189 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGG---LMIW 658 (1128)
Q Consensus 582 ~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~---~~~~ 658 (1128)
..++..+......++..+.+.|.++|+.+||+++.++++.+++.+..+...+..........+......++.. ++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (571)
T TIGR02203 177 RLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVL 256 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556667788899999999999999999999988888877776666555444444444433333222 2222
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCC
Q 001189 659 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 738 (1128)
Q Consensus 659 ~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~ 738 (1128)
+++.+.+. .+..+ .+.+..++.++..+..++..+............+.+|+.++++.+++.+.. ..+. -
T Consensus 257 ~~g~~~~~-~g~lt-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~--~ 325 (571)
T TIGR02203 257 FIALFQAQ-AGSLT-----AGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAI--E 325 (571)
T ss_pred HHHHHHHH-cCCCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCC--C
Confidence 22222222 22221 223333344555666777777778888888999999999998765543211 1111 1
Q ss_pred CCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 739 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 739 p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
+..+.|+++||+|+|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+|+++++.+++|
T Consensus 326 ~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~ 405 (571)
T TIGR02203 326 RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405 (571)
T ss_pred CCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHH
Confidence 23467999999999976545799999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
++|+|+||+|.+|++|+|+||..+. +.++++++++++.+++++++.++|.|+||.++++|.+||||||||++||||++
T Consensus 406 ~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall 485 (571)
T TIGR02203 406 RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL 485 (571)
T ss_pred hhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998774 57899999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHH
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 976 (1128)
++|+|||||||||+||+++++.|.+.|++..+++|+|+||||.+.+..||+|++|++|++++.|++++++++. +.|.++
T Consensus 486 ~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~-~~~~~~ 564 (571)
T TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN-GLYAQL 564 (571)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcC-CHHHHH
Confidence 9999999999999999999999999999988899999999999999999999999999999999999999764 456554
Q ss_pred HH
Q 001189 977 VQ 978 (1128)
Q Consensus 977 ~~ 978 (1128)
+.
T Consensus 565 ~~ 566 (571)
T TIGR02203 565 HN 566 (571)
T ss_pred HH
Confidence 43
No 28
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.8e-67 Score=657.39 Aligned_cols=541 Identities=22% Similarity=0.327 Sum_probs=407.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCC-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001189 427 LLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GP-LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILR 504 (1128)
Q Consensus 427 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~ 504 (1128)
+++.++...+....++++....|....... .. ..+...++++.++..++.+++.++....+.+...+++.++++++++
T Consensus 145 ~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~ 224 (694)
T TIGR01846 145 LLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLG 224 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333344444555566666666654322111 11 1223344455556777888899999999999999999999999999
Q ss_pred CCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 505 APMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAR 584 (1128)
Q Consensus 505 ~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 584 (1128)
.|+.||++.+.|++++|+ +|++.+...+.......+..+...+..++++.+.++...++++..++++..+..+..+..+
T Consensus 225 l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~ 303 (694)
T TIGR01846 225 LPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILR 303 (694)
T ss_pred CCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 6999888766544444343333333334444555554444433333333333333333333
Q ss_pred HHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001189 585 EVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG---GLMIWLTA 661 (1128)
Q Consensus 585 ~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~---~~~~~~~~ 661 (1128)
+..+......+...+.+.|+++|+.+||+++.++++.+++.+..+...+..........+......++. .+++++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g 383 (694)
T TIGR01846 304 KRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFG 383 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333333344556778999999999999999999988888877766655554443333333333333322 22222222
Q ss_pred HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCC
Q 001189 662 TFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS 741 (1128)
Q Consensus 662 ~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~ 741 (1128)
.+.+.. +..+ .+.+..+..+...+..++..+...+...+....+.+|+.++++.++|.+.. ..... ....
T Consensus 384 ~~lv~~-g~it-----~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~--~~~~ 453 (694)
T TIGR01846 384 AHLVIG-GALS-----PGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAAL--PELR 453 (694)
T ss_pred HHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCC--CCCC
Confidence 232322 2221 112222334445566677777777888889999999999999877654211 10011 1124
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|+++||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|++||+|+++++.+++|++|
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 67999999999976556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
+||||+|.+|++|++|||.+.. ..++++++++++.++++++++++|.|+||.++++|.+||||||||++||||++++|+
T Consensus 534 ~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ 613 (694)
T TIGR01846 534 GVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPR 613 (694)
T ss_pred eEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998754 468999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
|||||||||+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|++++.|+|++|+++. +.|++++..
T Consensus 614 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~ 691 (694)
T TIGR01846 614 ILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYARLWQQ 691 (694)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcC-ChHHHHHHh
Confidence 999999999999999999999999988889999999999999999999999999999999999999865 678877653
No 29
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.6e-69 Score=660.25 Aligned_cols=454 Identities=23% Similarity=0.379 Sum_probs=339.8
Q ss_pred cEEEEeEEEEeCCC-CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC-----CCCCcee-----------
Q 001189 119 AISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV----------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~-~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-----~~g~~~~----------- 181 (1128)
.++++|++++|+.. ..+++|+++||++++||+++|+||||||||||+++|+|+++| ++|.+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 58999999999632 135799999999999999999999999999999999999986 5664311
Q ss_pred ----ec-CcEEEEecCCC--CC-cccHHHHHhcCC----CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCC
Q 001189 182 ----IR-GTVAYVPQVSW--IF-NATVRDNILFGS----AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 245 (1128)
Q Consensus 182 ----~~-~~i~~v~Q~~~--l~-~~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~ 245 (1128)
.+ ..|||++|++. ++ ..|+++|+.+.. ..+ .+++.++++.+++.+... .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 11 36999999985 43 469999986421 112 134455566666643110 11223468
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEe
Q 001189 246 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVK 323 (1128)
Q Consensus 246 LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~ 323 (1128)
|||||||||+|||||+.+|++|||||||++||+.+.+++++.+.+... .|+|+|+|||+++.+. .||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999986554333 3899999999999886 48999999999999
Q ss_pred eecChhHHhhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcc
Q 001189 324 EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETG 403 (1128)
Q Consensus 324 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 403 (1128)
+.|+++++..... ..
T Consensus 237 ~~g~~~~~~~~~~------------------------------------------------------~~----------- 251 (529)
T PRK15134 237 EQNRAATLFSAPT------------------------------------------------------HP----------- 251 (529)
T ss_pred EeCCHHHHhhCCC------------------------------------------------------CH-----------
Confidence 8877654321000 00
Q ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 404 VVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWL 483 (1128)
Q Consensus 404 ~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 483 (1128)
+.+
T Consensus 252 ---------~~~-------------------------------------------------------------------- 254 (529)
T PRK15134 252 ---------YTQ-------------------------------------------------------------------- 254 (529)
T ss_pred ---------HHH--------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 484 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 563 (1128)
Q Consensus 484 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1128)
+
T Consensus 255 -------------------------------------~------------------------------------------ 255 (529)
T PRK15134 255 -------------------------------------K------------------------------------------ 255 (529)
T ss_pred -------------------------------------H------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 564 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 643 (1128)
Q Consensus 564 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1128)
++ ...
T Consensus 256 --------------~~----------~~~--------------------------------------------------- 260 (529)
T PRK15134 256 --------------LL----------NSE--------------------------------------------------- 260 (529)
T ss_pred --------------HH----------HhC---------------------------------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001189 644 WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 723 (1128)
Q Consensus 644 wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~ 723 (1128)
. +. . +
T Consensus 261 ------------------------------~---------------------------------------~~----~-~- 265 (529)
T PRK15134 261 ------------------------------P---------------------------------------SG----D-P- 265 (529)
T ss_pred ------------------------------c---------------------------------------cc----c-c-
Confidence 0 00 0 0
Q ss_pred CCccccCCCCCCCCCCCCccEEEEEEEEEeCC---------CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Q 001189 724 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 724 e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~---------~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
..+ +. +....|+++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|+|+
T Consensus 266 ~~~-------~~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 335 (529)
T PRK15134 266 VPL-------PE---PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL 335 (529)
T ss_pred ccc-------CC---CCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 000 00 00114899999999952 124699999999999999999999999999999999999
Q ss_pred CCCCCceEEECCEecCCCChHH---hhhceEEEcCCC--cccc-ccHhhccccCC----C-CCHHHHHHHHHHhcHHHHH
Q 001189 795 VELERGRILIDGFDIAKFGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDPFS----E-HSDADLWEALERAHLKDAI 863 (1128)
Q Consensus 795 ~~p~~G~I~i~g~~i~~~~~~~---~r~~i~~v~Q~~--~lf~-~Tv~~nl~~~~----~-~~~~~i~~~l~~~~l~~~i 863 (1128)
+ |++|+|.++|.++...+... +|++++|+||++ .++. .|+++|+.+.. . ....+.. ..+.+++
T Consensus 336 ~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~l 409 (529)
T PRK15134 336 I-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQRE-----QQVIAVM 409 (529)
T ss_pred C-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHH-----HHHHHHH
Confidence 8 58999999999987765443 467899999998 3665 49999996421 0 1111110 1122333
Q ss_pred HHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCch
Q 001189 864 RRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLN 940 (1128)
Q Consensus 864 ~~lp~Gld-t~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~ 940 (1128)
+.+ |+. ........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++
T Consensus 410 ~~~--~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~ 487 (529)
T PRK15134 410 EEV--GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH 487 (529)
T ss_pred HHc--CCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 332 443 234455578999999999999999999999999999999999999999999998653 789999999999
Q ss_pred hhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 941 TIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 941 ~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
.+.. ||||++|++|++++.|++++++..+
T Consensus 488 ~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 517 (529)
T PRK15134 488 VVRALCHQVIVLRQGEVVEQGDCERVFAAP 517 (529)
T ss_pred HHHHhcCeEEEEECCEEEEEcCHHHHhcCC
Confidence 9987 9999999999999999999997654
No 30
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-70 Score=659.60 Aligned_cols=443 Identities=21% Similarity=0.321 Sum_probs=335.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCCcee-------------ec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-------------IR 183 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~--~~g~~~~-------------~~ 183 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++| ++|.+.. .+
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 5899999999962 5799999999999999999999999999999999999986 6665421 13
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC------CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 184 GTVAYVPQVSWIF-NATVRDNILFGSA------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
..++|++|++.++ ..|++||+.++.. .+.+ ++.++++..++.. .......+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-----------NPATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHHHHH
Confidence 4599999999876 5699999988632 1211 2233333333321 123345689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|++|||||+.+|++|||||||++||+.+.+++++.+.....+|+|+|++||+++++.. ||+|++|++|+++..|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999998665544468999999999999865 899999999999876643221
Q ss_pred hhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHH
Q 001189 332 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 411 (1128)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 411 (1128)
... . ...
T Consensus 231 ~~~---------------------------------------------------------------~----------~~~ 237 (506)
T PRK13549 231 TED---------------------------------------------------------------D----------IIT 237 (506)
T ss_pred CHH---------------------------------------------------------------H----------HHH
Confidence 000 0 000
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 412 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 491 (1128)
Q Consensus 412 ~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 491 (1128)
T Consensus 238 -------------------------------------------------------------------------------- 237 (506)
T PRK13549 238 -------------------------------------------------------------------------------- 237 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 492 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 571 (1128)
Q Consensus 492 ~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1128)
++
T Consensus 238 -----------------------------~~------------------------------------------------- 239 (506)
T PRK13549 238 -----------------------------MM------------------------------------------------- 239 (506)
T ss_pred -----------------------------Hh-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 572 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 651 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~ 651 (1128)
+
T Consensus 240 -------~------------------------------------------------------------------------ 240 (506)
T PRK13549 240 -------V------------------------------------------------------------------------ 240 (506)
T ss_pred -------h------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCC
Q 001189 652 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 731 (1128)
Q Consensus 652 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~ 731 (1128)
.... . .. .+...
T Consensus 241 ----------------~~~~-----------------------------------------~---~~--~~~~~------ 252 (506)
T PRK13549 241 ----------------GREL-----------------------------------------T---AL--YPREP------ 252 (506)
T ss_pred ----------------CcCc-----------------------------------------c---cc--ccccc------
Confidence 0000 0 00 00000
Q ss_pred CCCCCCCCCCccEEEEEEEEEeCC-CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEec
Q 001189 732 NRPPPGWPSSGSIKFEDVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILIDGFDI 809 (1128)
Q Consensus 732 ~~~~~~~p~~g~i~~~~v~~~y~~-~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-p~~G~I~i~g~~i 809 (1128)
++ +....|+++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 253 --~~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~ 327 (506)
T PRK13549 253 --HT---IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPV 327 (506)
T ss_pred --cC---CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEEC
Confidence 00 01124899999999942 12469999999999999999999999999999999999999 5999999999998
Q ss_pred CCCCh-HHhhhceEEEcCCC---cccc-ccHhhccccCC--CC------CHHHHHHHHHHhcHHHHHHHccCCcch-hhh
Q 001189 810 AKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFS--EH------SDADLWEALERAHLKDAIRRNSLGLDA-QVS 875 (1128)
Q Consensus 810 ~~~~~-~~~r~~i~~v~Q~~---~lf~-~Tv~~nl~~~~--~~------~~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~ 875 (1128)
...+. ...|+.++|+||++ .+|. .|+.+|+.+.. .. ...+ ....+.++++.+ |++. ...
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~ 400 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPE 400 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcc
Confidence 65543 34567799999996 3554 59999996421 11 1111 111234445543 3432 334
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeC
Q 001189 876 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDS 953 (1128)
Q Consensus 876 e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~ 953 (1128)
....+||||||||++||||++.+|+||||||||++||+.+.+.+++.|+++. +++|||+|||+++++.. |||+++|++
T Consensus 401 ~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~ 480 (506)
T PRK13549 401 LAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHE 480 (506)
T ss_pred cccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 5556899999999999999999999999999999999999999999998864 47899999999999987 999999999
Q ss_pred CEEEEecChhHH
Q 001189 954 GRVLEYDTPEEL 965 (1128)
Q Consensus 954 G~i~~~g~~~~l 965 (1128)
|+++..|+++++
T Consensus 481 G~i~~~~~~~~~ 492 (506)
T PRK13549 481 GKLKGDLINHNL 492 (506)
T ss_pred CEEEEEeccccC
Confidence 999999988776
No 31
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.4e-66 Score=639.54 Aligned_cols=544 Identities=22% Similarity=0.296 Sum_probs=393.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 424 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 503 (1128)
Q Consensus 424 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 503 (1128)
.+++++.++...+....++++....|..... .....+..+++++.+...+..++..++......+....++..++++++
T Consensus 22 ~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 100 (588)
T PRK13657 22 ILLAVANVLLAAATFAEPILFGRIIDAISGK-GDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERII 100 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666776666543221 111112222333333333333333444444445555566779999999
Q ss_pred cCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 504 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 583 (1128)
Q Consensus 504 ~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 583 (1128)
+.|..+|++.+.|++++|+++|++.+...+...+..++..++..+..++++..+++...++++.++++++.+..++.+..
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 180 (588)
T PRK13657 101 QLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKT 180 (588)
T ss_pred hCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765544444444444444444444445555444444433333344444555555
Q ss_pred HHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001189 584 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMIWLT 660 (1128)
Q Consensus 584 ~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~~~~~ 660 (1128)
++..+......+.+.+.+.|.++|+++||+|+.++.+.+.+.+..+...+..........+.....+++ ..+++++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
T PRK13657 181 KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVL 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555667788899999999999999999998887777666655554433322222222222222 22222222
Q ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCC
Q 001189 661 ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS 740 (1128)
Q Consensus 661 ~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~ 740 (1128)
+.+.+. .+..+ .+.+..++.++..+..++..+............+.+|+.++.+.+++.+... ..... -+.
T Consensus 261 g~~~v~-~g~lt-----~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~--~~~~~-~~~ 331 (588)
T PRK13657 261 GAALVQ-KGQLR-----VGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP--GAIDL-GRV 331 (588)
T ss_pred HHHHHH-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC--CCCCc-CCC
Confidence 333332 22222 1122223334444555566666666666677788888888776543321110 10000 012
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
.+.|+++||+|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.+||.|+.+++...+|++
T Consensus 332 ~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 332 KGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred CCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 3579999999999743 469999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
|+|+||+|.+|++|+|+||.++. +.+|++++++++.+++++++.++|.|+||.++++|.+||||||||++||||++++|
T Consensus 411 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 411 IAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred eEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998764 46899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
+|||||||||+||+++++.|.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|++++++. +.|.+++..
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~ 569 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARG-GRFAALLRA 569 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCC-ChHHHHHHH
Confidence 9999999999999999999999999887889999999999999999999999999999999999999764 678777654
No 32
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.5e-69 Score=659.46 Aligned_cols=439 Identities=27% Similarity=0.434 Sum_probs=333.9
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCC--CCCCCCcee----------------
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--PPVSDASAV---------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~--~~~~g~~~~---------------- 181 (1128)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+. +|++|.+..
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 468999999952 57999999999999999999999999999999999996 687765322
Q ss_pred -----------------------------ecCcEEEEecC-CCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhC
Q 001189 182 -----------------------------IRGTVAYVPQV-SWIF-NATVRDNILFGS---AFE----PARYEKAIDVTS 223 (1128)
Q Consensus 182 -----------------------------~~~~i~~v~Q~-~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~ 223 (1128)
++..++|++|+ +.++ ..|++||+.++. ..+ .+++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 12359999997 5666 469999998742 122 134455666666
Q ss_pred cHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEc
Q 001189 224 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVT 302 (1128)
Q Consensus 224 l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvt 302 (1128)
+.+..+. ...+|||||||||+|||||+.+|++|||||||++||+.+.+++++.+.+... .|+|+|+||
T Consensus 158 l~~~~~~-----------~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRITH-----------IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 6544433 3358999999999999999999999999999999999999999886554433 489999999
Q ss_pred cCccchh-cCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcc
Q 001189 303 NQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEA 381 (1128)
Q Consensus 303 H~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1128)
|+++++. .||+|++|++|+++..|+++++...
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----------------------------------------------- 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV----------------------------------------------- 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH-----------------------------------------------
Confidence 9999986 4899999999998865543221000
Q ss_pred ccccccccchhhhhhhhhhhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHH
Q 001189 382 SDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFY 461 (1128)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 461 (1128)
T Consensus 260 -------------------------------------------------------------------------------- 259 (520)
T TIGR03269 260 -------------------------------------------------------------------------------- 259 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHH
Q 001189 462 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFM 541 (1128)
Q Consensus 462 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~ 541 (1128)
+.
T Consensus 260 ------------------------------------------------------------~~------------------ 261 (520)
T TIGR03269 260 ------------------------------------------------------------FM------------------ 261 (520)
T ss_pred ------------------------------------------------------------HH------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHH
Q 001189 542 GQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 621 (1128)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~ 621 (1128)
....
T Consensus 262 ------------------------------------------~~~~---------------------------------- 265 (520)
T TIGR03269 262 ------------------------------------------EGVS---------------------------------- 265 (520)
T ss_pred ------------------------------------------hhch----------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 622 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 701 (1128)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 701 (1128)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCC---CCCCceeeeeEEEcCCcEEEEEC
Q 001189 702 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVG 778 (1128)
Q Consensus 702 ~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~---~~~~~l~~vsl~i~~Ge~v~ivG 778 (1128)
++.. +... + +....|+++|++++|+. +..++|+|+||+|++||++||+|
T Consensus 266 ------------~~~~----~~~~--------~----~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G 317 (520)
T TIGR03269 266 ------------EVEK----ECEV--------E----VGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVG 317 (520)
T ss_pred ------------hhcc----cccc--------C----CCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEEC
Confidence 0000 0000 0 00124999999999952 22469999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCCceEEEC-CE---ecCCCCh---HHhhhceEEEcCCCccccc-cHhhccccCC--CCCH-
Q 001189 779 RTGAGKSSMLNTLFRIVELERGRILID-GF---DIAKFGL---MDLRKILGIIPQSPVLFSG-TVRFNLDPFS--EHSD- 847 (1128)
Q Consensus 779 ~~GsGKSTll~~l~g~~~p~~G~I~i~-g~---~i~~~~~---~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~--~~~~- 847 (1128)
|||||||||+++|+|+++|++|+|.++ |. ++...+. ..+|++|+|+||++.+|.. |+++|+.... ....
T Consensus 318 ~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~ 397 (520)
T TIGR03269 318 TSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE 397 (520)
T ss_pred CCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999996 64 3333322 2456789999999988865 9999996311 1111
Q ss_pred ---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHH
Q 001189 848 ---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 924 (1128)
Q Consensus 848 ---~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~ 924 (1128)
+++.++++..++.+. ..+........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+
T Consensus 398 ~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~ 471 (520)
T TIGR03269 398 LARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL 471 (520)
T ss_pred HHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 122333333332110 00012344556899999999999999999999999999999999999999999998
Q ss_pred HHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 925 EEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 925 ~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+.. .+.|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 472 ~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 472 KAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 864 37899999999999987 99999999999999999988764
No 33
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-69 Score=656.45 Aligned_cols=441 Identities=22% Similarity=0.337 Sum_probs=333.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 5899999999963 57999999999999999999999999999999999999998875432 1235
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCC-----C-----CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSA-----F-----EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~-----~-----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
|+|++|++.++ ..||+||+.++.. . +. ++..++++..++.+. ......+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHH
Confidence 99999999876 5699999987531 0 11 122333444443221 233446899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|++|||||||++||+.+.+++++.+.+...+|+|+|+|||+++++. .||+|++|++|++++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 99999999999999999999999999999999999866554445899999999999986 48999999999998776644
Q ss_pred HHhhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHH
Q 001189 330 DLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKV 409 (1128)
Q Consensus 330 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 409 (1128)
++.... ...
T Consensus 231 ~~~~~~-----~~~------------------------------------------------------------------ 239 (510)
T PRK09700 231 DVSNDD-----IVR------------------------------------------------------------------ 239 (510)
T ss_pred hCCHHH-----HHH------------------------------------------------------------------
Confidence 321000 000
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 410 LSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLY 489 (1128)
Q Consensus 410 ~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 489 (1128)
T Consensus 240 -------------------------------------------------------------------------------- 239 (510)
T PRK09700 240 -------------------------------------------------------------------------------- 239 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 490 AAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLL 569 (1128)
Q Consensus 490 ~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 569 (1128)
++
T Consensus 240 -------------------------------~~----------------------------------------------- 241 (510)
T PRK09700 240 -------------------------------LM----------------------------------------------- 241 (510)
T ss_pred -------------------------------Hh-----------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 570 LLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL 649 (1128)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l 649 (1128)
+ .+. .
T Consensus 242 ---------~-------------~~~-~---------------------------------------------------- 246 (510)
T PRK09700 242 ---------V-------------GRE-L---------------------------------------------------- 246 (510)
T ss_pred ---------c-------------CCC-c----------------------------------------------------
Confidence 0 000 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccc
Q 001189 650 EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVI 729 (1128)
Q Consensus 650 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~ 729 (1128)
. .+ .....+..
T Consensus 247 ------------------~--------------------------------------------~~---~~~~~~~~---- 257 (510)
T PRK09700 247 ------------------Q--------------------------------------------NR---FNAMKENV---- 257 (510)
T ss_pred ------------------c--------------------------------------------cc---cccccccc----
Confidence 0 00 00000000
Q ss_pred CCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Q 001189 730 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 809 (1128)
Q Consensus 730 ~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i 809 (1128)
.++ +....|+++|+++.|. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 258 ---~~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~ 327 (510)
T PRK09700 258 ---SNL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDI 327 (510)
T ss_pred ---ccC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEEC
Confidence 000 0112499999998763 389999999999999999999999999999999999999999999999998
Q ss_pred CCCCh-HHhhhceEEEcCCC---ccccc-cHhhccccCCCC------------CHHHHHHHHHHhcHHHHHHHccCCcc-
Q 001189 810 AKFGL-MDLRKILGIIPQSP---VLFSG-TVRFNLDPFSEH------------SDADLWEALERAHLKDAIRRNSLGLD- 871 (1128)
Q Consensus 810 ~~~~~-~~~r~~i~~v~Q~~---~lf~~-Tv~~nl~~~~~~------------~~~~i~~~l~~~~l~~~i~~lp~Gld- 871 (1128)
...+. ..+|+.++|+||++ .+|.. |+++|+.+.... ...+ ....+.+.++.+ |+.
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~ 400 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELL--ALKC 400 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhc--CCCC
Confidence 66543 34577899999984 46654 999998643110 1111 111233444443 443
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEE
Q 001189 872 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRIL 949 (1128)
Q Consensus 872 t~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~ 949 (1128)
.........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||||+
T Consensus 401 ~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~ 480 (510)
T PRK09700 401 HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIA 480 (510)
T ss_pred CCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEE
Confidence 23445556799999999999999999999999999999999999999999998864 47899999999999887 99999
Q ss_pred EEeCCEEEEecChh
Q 001189 950 LLDSGRVLEYDTPE 963 (1128)
Q Consensus 950 vl~~G~i~~~g~~~ 963 (1128)
+|++|++++.+++.
T Consensus 481 ~l~~G~i~~~~~~~ 494 (510)
T PRK09700 481 VFCEGRLTQILTNR 494 (510)
T ss_pred EEECCEEEEEecCc
Confidence 99999999887653
No 34
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-67 Score=592.52 Aligned_cols=506 Identities=24% Similarity=0.341 Sum_probs=369.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHH
Q 001189 460 FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 539 (1128)
Q Consensus 460 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~ 539 (1128)
-.+..|.+..++..++..++.+++.....+.-++...+.|++.+.+.+++|.+..+|.+.+.+..-...+...+...+..
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 34567888889999999999999999999999999999999999999999999999988887776666665555444444
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHH
Q 001189 540 FMGQVSQLLSTFVLIGIV-STMSLWAIMPLLLLFYAAYLYYQSTA-REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 617 (1128)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~ 617 (1128)
++..++.+......+.+- ++...+ +....+..|.++..+.... .+.|+....+.....+...+.+.+..+||+|+.|
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~l-i~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFAL-ITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHH-HHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 444433333222222111 111111 1112222333332221111 1223333333444556778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 001189 618 DRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVV--QNGSAENQEAFASTMGLLLSYALNITSLL 695 (1128)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 695 (1128)
++..+++...+....+......+....+.+.-..+..+....+..+... .++..+ ..-+-++.++..++..++
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mt-----vgdlv~~n~l~~qL~~~l 308 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMT-----VGDLVMVNSLLFQLSLPL 308 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-----ccchhhHHHHHHHHHhHH
Confidence 9999999988888877766655444444443333332222111111111 011110 011112223333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEE
Q 001189 696 TAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVG 775 (1128)
Q Consensus 696 ~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ 775 (1128)
..+-..+......+.-+.-+.... +.+.. ..+. +.+.....+.|+|+||+|.|+++ +++|+++||+|++||+||
T Consensus 309 ~~Lg~vyr~~~q~l~Dm~~~~~l~--~~~~~-i~~~--~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVa 382 (591)
T KOG0057|consen 309 NFLGSVYRELRQALTDMRTLFILL--EVDED-IQEA--ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVA 382 (591)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhh--hhhhh-hhhc--cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEEE
Confidence 444433333333333222222111 11110 0111 11222335679999999999876 469999999999999999
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHH
Q 001189 776 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEAL 854 (1128)
Q Consensus 776 ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l 854 (1128)
|||+|||||||++++|+|+++ ++|+|+|||+|+++++++.+|+.|||||||..||++||.+||.++. ..+++++.+++
T Consensus 383 IvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~ 461 (591)
T KOG0057|consen 383 IVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEAC 461 (591)
T ss_pred EECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999998765 46899999999
Q ss_pred HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEE
Q 001189 855 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 934 (1128)
Q Consensus 855 ~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~ 934 (1128)
++++++|.+.++|+||+|.+||+|..||||||||++||||++++|+|+++|||||+||.+||+.|.+.|.+...++|+|+
T Consensus 462 k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~ 541 (591)
T KOG0057|consen 462 KRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIM 541 (591)
T ss_pred HHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred eecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 935 IAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 935 vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
|.||++++++||+|+++++|+|.|+|+|+||++ +++.|..++..
T Consensus 542 IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~ 585 (591)
T KOG0057|consen 542 IVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTT 585 (591)
T ss_pred EEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcc
Confidence 999999999999999999999999999999999 56677766654
No 35
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-69 Score=592.96 Aligned_cols=495 Identities=24% Similarity=0.392 Sum_probs=387.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001189 473 VLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFV 552 (1128)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~ 552 (1128)
.++.-+++++.........+.+--++++|+.++++.|.-....|+++.-+.+....+. .+...+.+....+..+...++
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~v 351 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMV 351 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhh
Confidence 4566778888888999999999999999999999999999999998888777666554 333334444444444433333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHH
Q 001189 553 LIGI-VSTMSLWAIMPLLLLFYAAY----LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 627 (1128)
Q Consensus 553 ~~~~-~~~~~~~~~~~ll~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~ 627 (1128)
...+ ..+|+..+++.++.++.... -+.-+..|++.....+++ +.-.+++-+..|+|-|+++++..+++.+.
T Consensus 352 YF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesr----Ar~vDsllNFETVKyy~Ae~yEverYreA 427 (790)
T KOG0056|consen 352 YFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESR----ARQVDSLLNFETVKYYNAEDYEVERYREA 427 (790)
T ss_pred hhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhh----hhhhhhhhcchhhhccCchhhhHHHHHHH
Confidence 2221 12233222222222211111 111122233322233322 34468899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 628 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAEN 707 (1128)
Q Consensus 628 ~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~ 707 (1128)
+..+++..+.....-..+...-+.+.++-...++.+++..-. .+..-.+-..++.+|.+++.++++++-..+..+++
T Consensus 428 il~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt---~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~ 504 (790)
T KOG0056|consen 428 ILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVT---EQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQK 504 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeee---eccccccceehHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999888777665544444444333333333333332221100 00001122345678888999999999989999999
Q ss_pred HHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHH
Q 001189 708 SLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 787 (1128)
Q Consensus 708 ~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTl 787 (1128)
.+.-+|++.++++.++|. .+.+..++-...+|.|+|+||+|.|+++ +|+|+||||+++||+.+|+|||||+||||+
T Consensus 505 nfiDmEnmfdllkee~eV---vd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTi 580 (790)
T KOG0056|consen 505 NFIDMENMFDLLKEEPEV---VDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTI 580 (790)
T ss_pred hhhhHHHHHHHhhcCchh---hcCCCCCCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHH
Confidence 999999999988654442 2222222333357899999999999877 489999999999999999999999999999
Q ss_pred HHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHc
Q 001189 788 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRN 866 (1128)
Q Consensus 788 l~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~l 866 (1128)
+++|+|+++.++|+|.|||+||++...+.+|++||+||||..||+.||..||.+.. ..+++|+.+|.+++++++.|..+
T Consensus 581 mRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~f 660 (790)
T KOG0056|consen 581 MRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQF 660 (790)
T ss_pred HHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998765 46899999999999999999999
Q ss_pred cCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcC
Q 001189 867 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 946 (1128)
Q Consensus 867 p~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D 946 (1128)
|+||+|.|||+|-.||||||||+++||+++++|.|++|||+||+||..|++.||.+|.+...++|.|+|+||++++-+||
T Consensus 661 PegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD 740 (790)
T KOG0056|consen 661 PEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNAD 740 (790)
T ss_pred chhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 947 RILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 947 ~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
.|+|+++|+|+|.|+|+||+++++|.|.+|++.
T Consensus 741 ~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 741 LILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 999999999999999999999999999999974
No 36
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.1e-66 Score=632.83 Aligned_cols=463 Identities=24% Similarity=0.335 Sum_probs=357.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHH
Q 001189 468 LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQL 547 (1128)
Q Consensus 468 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~ 547 (1128)
+.++..++.++..++....+.+...+++.++++++++.|..||+++++|++++|+++|++.++..+...+..++..+..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777778888899999999999999999999999999999999999999999987776666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHH
Q 001189 548 LSTFVLIGIVSTMSLWAIMPLLLL-FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 626 (1128)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~ 626 (1128)
+..+++++.+++...++++..+++ .+....+..+..+...+......+.+.+++.|.++|+++||+|+.++++.+++.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 666666666665544433332222 2222233333333333334445677889999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 627 SMDKNIRYTLVNMGANRWLAIRLEIVGGLMI---WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLAS 703 (1128)
Q Consensus 627 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 703 (1128)
..+...+..........+......++..+.. ++.+.+.+. .+..+ .+.+..++.+...+..++..+.....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~t-----~g~l~~~~~~~~~~~~~~~~l~~~~~ 295 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVA-DGTLA-----PATLAVLVLLPLAAFEAFAPLPAAAQ 295 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555444333333332222222222111 111222222 22221 12233334445556667777777778
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCC
Q 001189 704 LAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 783 (1128)
Q Consensus 704 ~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsG 783 (1128)
.......+.+|+.++++.+++.+... ...+...++..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||
T Consensus 296 ~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsG 373 (529)
T TIGR02868 296 ALTRVRAAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSG 373 (529)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCC
Confidence 88888999999999998765432111 11111123345679999999999754 36999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHH
Q 001189 784 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDA 862 (1128)
Q Consensus 784 KSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~ 862 (1128)
||||+++|+|+++|++|+|.+||+|++++ .+++|++|+||||+|.+|++||||||.++. +.+|++++++++.++++++
T Consensus 374 KSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~ 452 (529)
T TIGR02868 374 KSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADW 452 (529)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999 999999999999999999999999999864 4689999999999999999
Q ss_pred HHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCc
Q 001189 863 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 939 (1128)
Q Consensus 863 i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l 939 (1128)
+.++|+|+||.+||+|.+||||||||++||||++++|+|||||||||+||+++++.|++.|++..+++|+|+||||+
T Consensus 453 i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 453 LRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999995
No 37
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-68 Score=644.63 Aligned_cols=201 Identities=17% Similarity=0.332 Sum_probs=170.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 319 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIG 385 (530)
T ss_pred eEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999872 4799
Q ss_pred EEcCCCc--ccc-ccHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 823 IIPQSPV--LFS-GTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 823 ~v~Q~~~--lf~-~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|+||++. ++. .|+++|+..+. ...++++.+.++..++. .........+||||||||++||||++.
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS----------QDDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC----------hhHhcCcccccCHHHHHHHHHHHHHhc
Confidence 9999974 443 59999986432 12234455556555442 122334456899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEE-EecChhHHhhc
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLSN 968 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~-~~g~~~~l~~~ 968 (1128)
+|+||||||||++||+.+...+.+.|++. ++|||+|||+++++.. ||||++|++|+++ ..|++++++..
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999885 5699999999999987 9999999999998 77999988754
No 38
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.5e-68 Score=647.40 Aligned_cols=436 Identities=20% Similarity=0.326 Sum_probs=332.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5899999999962 57999999999999999999999999999999999999999875432 1245
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCC-------CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSA-------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~-------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
++|++|++.++ ..||+||+.++.. .+.. ++.++++..++.+. ......+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHH
Confidence 99999998876 5799999988632 1111 22333444333221 223346899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHh
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
++|||||+.+|++|||||||++||+.+.+++++.+......|+|+|++||+++++. .||+|++|++|+++..|+.+++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999998765544445889999999999986 48999999999998765432210
Q ss_pred hcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHH
Q 001189 333 NNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSR 412 (1128)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 412 (1128)
.. .
T Consensus 230 ~~---------------------------------------------------------------~-------------- 232 (501)
T PRK10762 230 ED---------------------------------------------------------------S-------------- 232 (501)
T ss_pred HH---------------------------------------------------------------H--------------
Confidence 00 0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 413 YKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 492 (1128)
Q Consensus 413 y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1128)
. ..
T Consensus 233 ~------------------------------~~----------------------------------------------- 235 (501)
T PRK10762 233 L------------------------------IE----------------------------------------------- 235 (501)
T ss_pred H------------------------------HH-----------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 493 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 572 (1128)
Q Consensus 493 ~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 572 (1128)
++
T Consensus 236 ----------------------------~~-------------------------------------------------- 237 (501)
T PRK10762 236 ----------------------------MM-------------------------------------------------- 237 (501)
T ss_pred ----------------------------Hh--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 573 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 652 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~ 652 (1128)
+
T Consensus 238 ------~------------------------------------------------------------------------- 238 (501)
T PRK10762 238 ------V------------------------------------------------------------------------- 238 (501)
T ss_pred ------c-------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001189 653 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 732 (1128)
Q Consensus 653 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~ 732 (1128)
.. +.. ..++..+
T Consensus 239 ---------------~~--------------------------------------------~~~---~~~~~~~------ 250 (501)
T PRK10762 239 ---------------GR--------------------------------------------KLE---DQYPRLD------ 250 (501)
T ss_pred ---------------CC--------------------------------------------Ccc---ccccccc------
Confidence 00 000 0000000
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001189 733 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 812 (1128)
Q Consensus 733 ~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~ 812 (1128)
.+ +....|+++|+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 251 -~~---~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~ 319 (501)
T PRK10762 251 -KA---PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTR 319 (501)
T ss_pred -cC---CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC
Confidence 00 0112488999974 379999999999999999999999999999999999999999999999999776
Q ss_pred ChH-HhhhceEEEcCCC---cccc-ccHhhccccCCC---------CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcC
Q 001189 813 GLM-DLRKILGIIPQSP---VLFS-GTVRFNLDPFSE---------HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEA 877 (1128)
Q Consensus 813 ~~~-~~r~~i~~v~Q~~---~lf~-~Tv~~nl~~~~~---------~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~ 877 (1128)
++. .+|++++|+||++ .+|. .|+++|+.+... ....+. ...+.++++.+ |+. ......
T Consensus 320 ~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~ 392 (501)
T PRK10762 320 SPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQA 392 (501)
T ss_pred CHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCc
Confidence 543 4567899999997 3554 599999964210 011111 11233444443 442 234555
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001189 878 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 955 (1128)
Q Consensus 878 g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~ 955 (1128)
...||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++++.. ||+|++|++|+
T Consensus 393 ~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 472 (501)
T PRK10762 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCE
Confidence 67899999999999999999999999999999999999999999999865 47899999999999987 99999999999
Q ss_pred EEEecChhHH
Q 001189 956 VLEYDTPEEL 965 (1128)
Q Consensus 956 i~~~g~~~~l 965 (1128)
++..|+++++
T Consensus 473 i~~~~~~~~~ 482 (501)
T PRK10762 473 ISGEFTREQA 482 (501)
T ss_pred EEEEeccccC
Confidence 9999987765
No 39
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.2e-68 Score=645.12 Aligned_cols=450 Identities=23% Similarity=0.391 Sum_probs=339.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee-------------cC
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RG 184 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------------~~ 184 (1128)
+.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..- +.
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 10 PLLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred ceEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 36999999999963 579999999999999999999999999999999999999998754321 13
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCCC---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSAFE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
.++|++|++.++ ..||+||+.++.... .++..++++..++.... .....+|||||||||+|||||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-----------DSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-----------cCChhhCCHHHHHHHHHHHHH
Confidence 599999999876 569999999874321 23444555555553322 233468999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcchHHH
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELFQ 339 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 339 (1128)
+.+|++|||||||++||+.+.+++++.+.....+|+|+|++||+++++. .||+|++|++|++++.|+++++.... ...
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-~~~ 234 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD-IIQ 234 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-HHH
Confidence 9999999999999999999999999876554446899999999999886 48999999999999888765542110 000
Q ss_pred HHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHHHHhhh
Q 001189 340 KLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGG 419 (1128)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~ 419 (1128)
.+.
T Consensus 235 ~~~----------------------------------------------------------------------------- 237 (510)
T PRK15439 235 AIT----------------------------------------------------------------------------- 237 (510)
T ss_pred HHh-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 420 LWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 499 (1128)
Q Consensus 420 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 499 (1128)
..
T Consensus 238 -----------------------------~~------------------------------------------------- 239 (510)
T PRK15439 238 -----------------------------PA------------------------------------------------- 239 (510)
T ss_pred -----------------------------Cc-------------------------------------------------
Confidence 00
Q ss_pred HHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 500 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 579 (1128)
Q Consensus 500 ~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 579 (1128)
. ..
T Consensus 240 ------~--------~~--------------------------------------------------------------- 242 (510)
T PRK15439 240 ------A--------RE--------------------------------------------------------------- 242 (510)
T ss_pred ------c--------cc---------------------------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 580 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 659 (1128)
Q Consensus 580 ~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~ 659 (1128)
...+ .
T Consensus 243 ----~~~~------~----------------------------------------------------------------- 247 (510)
T PRK15439 243 ----KSLS------A----------------------------------------------------------------- 247 (510)
T ss_pred ----cccc------c-----------------------------------------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
..+.. ...|...+ . .+ +
T Consensus 248 ----------------------------------------------------~~~~~--~~~~~~~~-----~-~~---~ 264 (510)
T PRK15439 248 ----------------------------------------------------SQKLW--LELPGNRR-----Q-QA---A 264 (510)
T ss_pred ----------------------------------------------------ccccc--cccccccc-----c-cC---C
Confidence 00000 00000000 0 00 0
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-hh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 818 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r 818 (1128)
....|+++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .|
T Consensus 265 ~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 337 (510)
T PRK15439 265 GAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLA 337 (510)
T ss_pred CCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 112489999983 2699999999999999999999999999999999999999999999999998766554 45
Q ss_pred hceEEEcCCC---ccccc-cHhhccccC--C--CC--CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHH
Q 001189 819 KILGIIPQSP---VLFSG-TVRFNLDPF--S--EH--SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 819 ~~i~~v~Q~~---~lf~~-Tv~~nl~~~--~--~~--~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrq 887 (1128)
+.|+|+||++ .+|.. |+.+|+... . .. ...+. +..+.++++.+ |+. .........|||||||
T Consensus 338 ~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kq 410 (510)
T PRK15439 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGGNQQ 410 (510)
T ss_pred CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcHHHH
Confidence 6799999986 36654 999998421 0 00 11111 11233445543 443 3445556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++++.. ||||++|++|+++..|+++++
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999999864 47899999999999987 999999999999999998776
Q ss_pred h
Q 001189 966 L 966 (1128)
Q Consensus 966 ~ 966 (1128)
.
T Consensus 491 ~ 491 (510)
T PRK15439 491 N 491 (510)
T ss_pred C
Confidence 5
No 40
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.4e-65 Score=631.91 Aligned_cols=545 Identities=24% Similarity=0.376 Sum_probs=409.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCC-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 425 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GP-LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 502 (1128)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 502 (1128)
+.+++.++...+....++.+....+....... .. ..+..+++++.+...+..+.+.++....+.+....++..+++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 101 (576)
T TIGR02204 22 AALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHL 101 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555566666555543211111 11 11222333444445566677788888888999999999999999
Q ss_pred HcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 503 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 582 (1128)
Q Consensus 503 l~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 582 (1128)
++.|..+|++.+.|++++|+++|++.++..+...+..++..+..++..++++..+.+...++++..+++++....++.+.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~ 181 (576)
T TIGR02204 102 ISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRR 181 (576)
T ss_pred HcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987766655565666666666666666565555444333333333333344444
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 001189 583 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG---GLMIWL 659 (1128)
Q Consensus 583 ~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~---~~~~~~ 659 (1128)
.+...+..........+.+.|.++|+++||+++.++++...+.+..+...+..........|.......+. .+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (576)
T TIGR02204 182 VRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLW 261 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445556667788999999999999999999988877777666554443333323333333222221 111112
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
++.+.+. .+..+ .+.+..+..++..+..++..+...+........+.+|+.++++.+++.+.... .....++
T Consensus 262 ~g~~~v~-~g~lt-----~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~~~~~ 333 (576)
T TIGR02204 262 VGAHDVI-AGKMS-----AGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH--PKTLPVP 333 (576)
T ss_pred HHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC--CccCCcC
Confidence 2222222 22221 22233344455566677777888888888999999999999876554221110 1111223
Q ss_pred CCccEEEEEEEEEeCCCC-CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 740 SSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~-~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
..+.|+++||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||.+++++++.++|
T Consensus 334 ~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 334 LRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred CCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHH
Confidence 346799999999997532 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
++|+|+||+|.+|++|++|||.++. +.++++++++++.+++.++++++|.|+||.++++|.+||||||||++||||+++
T Consensus 414 ~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~ 493 (576)
T TIGR02204 414 ARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK 493 (576)
T ss_pred HhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998754 457899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|++++++. +.|.+++
T Consensus 494 ~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~-~~~~~l~ 572 (576)
T TIGR02204 494 DAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKG-GLYARLA 572 (576)
T ss_pred CCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcC-ChHHHHH
Confidence 999999999999999999999999999988899999999999999999999999999999999999998753 5676665
Q ss_pred H
Q 001189 978 Q 978 (1128)
Q Consensus 978 ~ 978 (1128)
.
T Consensus 573 ~ 573 (576)
T TIGR02204 573 R 573 (576)
T ss_pred h
Confidence 4
No 41
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-68 Score=647.57 Aligned_cols=440 Identities=21% Similarity=0.295 Sum_probs=331.5
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecC
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 184 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 184 (1128)
+.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++.
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 3 PYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred ceEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhC
Confidence 36899999999963 46999999999999999999999999999999999999999876432 134
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC------CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 185 TVAYVPQVSWIFN-ATVRDNILFGSA------FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~-~Tv~eni~~g~~------~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
.|+|++|++.++. .||+||+.++.. .+. +++.++++..++.. .......+||||||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qr 148 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-----------DPDTPLKYLSIGQRQM 148 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----------CcCCchhhCCHHHHHH
Confidence 6999999998874 699999987631 111 22333444444321 1223456899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHh
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
++|||||+.+|+++||||||++||+.+.+++++.+.....+|+|+|+|||+++++.. ||+|++|++|+++..++..+.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~- 227 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQ- 227 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCcccc-
Confidence 999999999999999999999999999999998665544468999999999998865 899999999998753320000
Q ss_pred hcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHH
Q 001189 333 NNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSR 412 (1128)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 412 (1128)
.. .+.
T Consensus 228 --------------------------------------------~~------------------~~~------------- 232 (501)
T PRK11288 228 --------------------------------------------VD------------------RDQ------------- 232 (501)
T ss_pred --------------------------------------------CC------------------HHH-------------
Confidence 00 000
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 413 YKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 492 (1128)
Q Consensus 413 y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1128)
+.
T Consensus 233 ~~------------------------------------------------------------------------------ 234 (501)
T PRK11288 233 LV------------------------------------------------------------------------------ 234 (501)
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 493 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 572 (1128)
Q Consensus 493 ~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 572 (1128)
..+
T Consensus 235 ---------------------------~~~-------------------------------------------------- 237 (501)
T PRK11288 235 ---------------------------QAM-------------------------------------------------- 237 (501)
T ss_pred ---------------------------HHh--------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 573 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 652 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~ 652 (1128)
. .+
T Consensus 238 -----------------~--~~---------------------------------------------------------- 240 (501)
T PRK11288 238 -----------------V--GR---------------------------------------------------------- 240 (501)
T ss_pred -----------------c--CC----------------------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001189 653 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 732 (1128)
Q Consensus 653 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~ 732 (1128)
.. ++. ....+.
T Consensus 241 -----------------~~-----------------------------------------~~~---~~~~~~-------- 251 (501)
T PRK11288 241 -----------------EI-----------------------------------------GDI---YGYRPR-------- 251 (501)
T ss_pred -----------------Cc-----------------------------------------ccc---cccccc--------
Confidence 00 000 000000
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001189 733 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 812 (1128)
Q Consensus 733 ~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~ 812 (1128)
+ +....++++|++++ .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 252 -~----~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~ 320 (501)
T PRK11288 252 -P----LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIR 320 (501)
T ss_pred -C----CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCC
Confidence 0 01124889999742 489999999999999999999999999999999999999999999999998654
Q ss_pred Ch-HHhhhceEEEcCCCc---ccc-ccHhhccccCCCC---------CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcC
Q 001189 813 GL-MDLRKILGIIPQSPV---LFS-GTVRFNLDPFSEH---------SDADLWEALERAHLKDAIRRNSLGLD-AQVSEA 877 (1128)
Q Consensus 813 ~~-~~~r~~i~~v~Q~~~---lf~-~Tv~~nl~~~~~~---------~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~ 877 (1128)
++ ...|+.++|+||++. +|. .|+.+|+.+.... ...+ ....+.++++.+ |++ ......
T Consensus 321 ~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~ 393 (501)
T PRK11288 321 SPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRW-----EAENADRFIRSL--NIKTPSREQL 393 (501)
T ss_pred CHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHH-----HHHHHHHHHHhc--CcccCCccCc
Confidence 43 345678999999973 554 6999998642110 1100 011223444443 342 233445
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001189 878 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 955 (1128)
Q Consensus 878 g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~ 955 (1128)
..+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++. .+.|||+|||+++++.. ||++++|++|+
T Consensus 394 ~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~ 473 (501)
T PRK11288 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473 (501)
T ss_pred cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCE
Confidence 56899999999999999999999999999999999999999999998865 47899999999999987 99999999999
Q ss_pred EEEecChhHHh
Q 001189 956 VLEYDTPEELL 966 (1128)
Q Consensus 956 i~~~g~~~~l~ 966 (1128)
+++.|+++++.
T Consensus 474 i~~~~~~~~~~ 484 (501)
T PRK11288 474 IAGELAREQAT 484 (501)
T ss_pred EEEEEccccCC
Confidence 99999887654
No 42
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2e-65 Score=629.06 Aligned_cols=506 Identities=22% Similarity=0.289 Sum_probs=381.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHH
Q 001189 462 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFM 541 (1128)
Q Consensus 462 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~ 541 (1128)
..+++++.++..++.++..++....+.+...+++..+++++++.|+.+|++.++|++++|+++|++.+.......+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444455566677777777888999999999999999999999999999999999999999998755444444444
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHH
Q 001189 542 GQVSQLLSTFVLI-GIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM 620 (1128)
Q Consensus 542 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~ 620 (1128)
..++..+..++++ ..+++...++++..+++++.+...+.+..++..+......+.+.+.+.|.++|+++||+|+.++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 198 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQ 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 4433333333322 234443333322222222233333333333333334445567888999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 001189 621 ADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 697 (1128)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 697 (1128)
.+++.+..+...+..........+.......+ +.++++.++.+.+. .+..+ .+.+..++.+...+..++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~-~g~lt-----~g~l~a~~~~~~~~~~pl~~ 272 (569)
T PRK10789 199 SALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV-NGSLT-----LGQLTSFVMYLGLMIWPMLA 272 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcC-----HHHHHHHHHHHHHHHHHHHH
Confidence 88877766655444433322222222222211 11222222222222 22221 11222233344445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEE
Q 001189 698 VLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIV 777 (1128)
Q Consensus 698 ~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~iv 777 (1128)
+......+.....+.+|+.++++.+++.+.. ....+ +..+.|+++||+|+|+++.+++|+|+||+|+|||+++|+
T Consensus 273 l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~iv 347 (569)
T PRK10789 273 LAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGIC 347 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEE
Confidence 6667777888899999999998765442211 00111 224579999999999755457999999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHH
Q 001189 778 GRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALER 856 (1128)
Q Consensus 778 G~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~ 856 (1128)
||||||||||+++|+|+++|++|+|.+||.++.+++...+|++++|+||+|.+|++|+++||.++. ..++++++++++.
T Consensus 348 G~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~ 427 (569)
T PRK10789 348 GPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARL 427 (569)
T ss_pred CCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998764 4689999999999
Q ss_pred hcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEee
Q 001189 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 936 (1128)
Q Consensus 857 ~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vt 936 (1128)
+++++++.++|.|+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|++..+++|+|+||
T Consensus 428 ~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~it 507 (569)
T PRK10789 428 ASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISA 507 (569)
T ss_pred cCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987899999999
Q ss_pred cCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 937 HRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 937 H~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
||++++..||+|++|++|++++.|++++++++. +.|++++..
T Consensus 508 H~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~ 549 (569)
T PRK10789 508 HRLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRY 549 (569)
T ss_pred cchhHHHcCCEEEEEeCCEEEEecCHHHHHHcC-ChHHHHHHH
Confidence 999999999999999999999999999999765 567777654
No 43
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=7.1e-65 Score=625.14 Aligned_cols=544 Identities=21% Similarity=0.277 Sum_probs=395.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 423 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 502 (1128)
Q Consensus 423 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 502 (1128)
+++.+++.++...+.+..++.++...|...... ....+..+++++.+...+..++..++......+...+++.++++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 99 (585)
T TIGR01192 21 VLLIVIANITLAAITIAEPILFGRIIDAISSKS-DVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRI 99 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666666666666655432211 1112222222223333334444444444555556666778999999
Q ss_pred HcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 503 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 582 (1128)
Q Consensus 503 l~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 582 (1128)
++.|+.||+++++|++++|+++|++.+...+...+...+..++.++..++++..+++...++++.++++++.+...+.+.
T Consensus 100 ~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 179 (585)
T TIGR01192 100 ISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQR 179 (585)
T ss_pred HcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887666555555555555555545555555554444433333333444444444
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 001189 583 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMIWL 659 (1128)
Q Consensus 583 ~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~~~~ 659 (1128)
.++..+......+.+.+++.|.++|+++||+|+.++.+.+.+.+..+...+..........+......++ ..+++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 259 (585)
T TIGR01192 180 TKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILV 259 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555667788899999999999999999888877776666554443332222222221111111 1222222
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
++.+.+. .+..+ .+.+..++.++..+..++..+............+.+|+.++.+.+++.... ..+ ..++
T Consensus 260 ~g~~~v~-~g~it-----~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~-~~~~ 329 (585)
T TIGR01192 260 IGTVLVI-KGELS-----VGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP---ADA-PELP 329 (585)
T ss_pred HHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---ccC-CCCC
Confidence 2222222 22221 122222334444555566666666677777788999998887655432111 110 1111
Q ss_pred -CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 740 -SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 740 -~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
..+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.++++..+|
T Consensus 330 ~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 408 (585)
T TIGR01192 330 NVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408 (585)
T ss_pred CCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHH
Confidence 24579999999999753 3689999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+.++|+||+|.+|++|++|||.++. ..++++++++++.+++++++.++|.|+||.++++|.+||||||||++|||||++
T Consensus 409 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 409 KSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred hheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998764 457899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|++++++++. +.|++++
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~ 567 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD-GRFYKLL 567 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC-ChHHHHH
Confidence 999999999999999999999999999887899999999999999899999999999999999999999864 5777776
Q ss_pred Hh
Q 001189 978 QS 979 (1128)
Q Consensus 978 ~~ 979 (1128)
..
T Consensus 568 ~~ 569 (585)
T TIGR01192 568 RR 569 (585)
T ss_pred Hh
Confidence 54
No 44
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.9e-68 Score=643.63 Aligned_cols=447 Identities=19% Similarity=0.287 Sum_probs=329.6
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCCcee-------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~--~~g~~~~-------------~~~ 184 (1128)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++| ++|.+.. .+.
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999962 5799999999999999999999999999999999999987 5665322 124
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC-------CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSA-------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~-------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
.|+|++|++.++ ..||+||+.++.. .+.+ +..++++..++.+.. ......+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHH
Confidence 599999999876 5699999987632 1111 222333333332110 01224689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|++|||||+.+|++|||||||++||+.+.+++++.+.....+|+|+|+|||+++++.. ||+|++|++|+++..|+.+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999998665544568999999999999865 899999999998764431110
Q ss_pred hhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHH
Q 001189 332 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 411 (1128)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 411 (1128)
.. .. .
T Consensus 229 ~~----------------------------------------------------------------~~---------~-- 233 (500)
T TIGR02633 229 SE----------------------------------------------------------------DD---------I-- 233 (500)
T ss_pred CH----------------------------------------------------------------HH---------H--
Confidence 00 00 0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 412 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 491 (1128)
Q Consensus 412 ~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 491 (1128)
.
T Consensus 234 --~----------------------------------------------------------------------------- 234 (500)
T TIGR02633 234 --I----------------------------------------------------------------------------- 234 (500)
T ss_pred --H-----------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 492 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 571 (1128)
Q Consensus 492 ~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1128)
.++
T Consensus 235 ----------------------------~~~------------------------------------------------- 237 (500)
T TIGR02633 235 ----------------------------TMM------------------------------------------------- 237 (500)
T ss_pred ----------------------------HHH-------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 572 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 651 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~ 651 (1128)
.
T Consensus 238 -------~------------------------------------------------------------------------ 238 (500)
T TIGR02633 238 -------V------------------------------------------------------------------------ 238 (500)
T ss_pred -------h------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCC
Q 001189 652 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 731 (1128)
Q Consensus 652 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~ 731 (1128)
.... . . ..+...
T Consensus 239 ----------------~~~~-----------------------------------------~---~--~~~~~~------ 250 (500)
T TIGR02633 239 ----------------GREI-----------------------------------------T---S--LYPHEP------ 250 (500)
T ss_pred ----------------Cccc-----------------------------------------c---c--cccccc------
Confidence 0000 0 0 000000
Q ss_pred CCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEec
Q 001189 732 NRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDI 809 (1128)
Q Consensus 732 ~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-~~G~I~i~g~~i 809 (1128)
.+ +....|+++|++++|+.+ ...+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 251 -~~----~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~ 325 (500)
T TIGR02633 251 -HE----IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325 (500)
T ss_pred -cC----CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC
Confidence 00 011248999999999421 23699999999999999999999999999999999999996 899999999998
Q ss_pred CCCCh-HHhhhceEEEcCCC---cccc-ccHhhccccCCC--CCH-HHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCC
Q 001189 810 AKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFSE--HSD-ADLWEALERAHLKDAIRRNSLGLDA-QVSEAGEN 880 (1128)
Q Consensus 810 ~~~~~-~~~r~~i~~v~Q~~---~lf~-~Tv~~nl~~~~~--~~~-~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~ 880 (1128)
...+. ..+|++++|+||++ .+|. .|+++|+.+... ... ..+........+.++++.+ |+.. ........
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~ 403 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL--KVKTASPFLPIGR 403 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc--CccCCCccCcccc
Confidence 65443 45678899999996 3665 499999975210 000 0000000112233444443 3321 23444567
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
||||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. ++.|||+|||+++++.. ||||++|++|+++.
T Consensus 404 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 47899999999999987 99999999999998
Q ss_pred ecChhH
Q 001189 959 YDTPEE 964 (1128)
Q Consensus 959 ~g~~~~ 964 (1128)
.++.++
T Consensus 484 ~~~~~~ 489 (500)
T TIGR02633 484 DFVNHA 489 (500)
T ss_pred EEcccc
Confidence 776543
No 45
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-66 Score=638.87 Aligned_cols=200 Identities=22% Similarity=0.358 Sum_probs=164.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++|
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999741 2699
Q ss_pred EEcCCC--cccc-ccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSP--VLFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~--~lf~-~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++ .++. .|+.+++.... ...+.++.+.++..++.. .........|||||||||+|||+++.+
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 999985 2333 37777653211 112333444444433321 123344467999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEE-EecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~-~~g~~~~l~~ 967 (1128)
|+||||||||++||+.+...+.+.|++. ++|||+|||+++++.. ||+|++|++|+++ ..|+++++..
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999985 4599999999999987 9999999999998 6799999854
No 46
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5.5e-65 Score=621.79 Aligned_cols=515 Identities=24% Similarity=0.294 Sum_probs=383.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-cCCC-C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSS-LKTH-G-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 502 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~-~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 502 (1128)
.+++.++...+....++.+++..|... .... . ...+..+++++.++..++.+++.+.....+.+...+++..+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 87 (529)
T TIGR02857 8 LGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAV 87 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555556666666555431 1111 1 122334455556667778888888888999999999999999999
Q ss_pred HcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 503 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 582 (1128)
Q Consensus 503 l~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 582 (1128)
++.|..+|++.++|++++|+++|++.++..+...+..++..+...+..++++...++...++++..+++...+...+.+.
T Consensus 88 ~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~ 167 (529)
T TIGR02857 88 AALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWA 167 (529)
T ss_pred HhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987766655555555555555555555555544333322222222222233333
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 001189 583 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI---WL 659 (1128)
Q Consensus 583 ~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~---~~ 659 (1128)
.+...+......+.+.+.+.|+++|+++||+|+.++++.+++.+..+...+..........+......++..+.. .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (529)
T TIGR02857 168 AQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAV 247 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333445567789999999999999999999888888776665554443333333333333333222211 11
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
.+.+.+. .+..+ .+.+..++.++..+..++..+............+.+|+.++++.+++... .. +...+
T Consensus 248 ~~~~~~~-~g~~t-----~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~--~~~~~ 316 (529)
T TIGR02857 248 YIGFRLL-AGDLD-----LATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA--PVTAA 316 (529)
T ss_pred HHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc--CCCCC
Confidence 2222222 22221 11222233444455566666667777888889999999999875433211 10 11112
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
..+.|+++||+|+|+++.+++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||.|+++++.+++|+
T Consensus 317 ~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred CCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 23579999999999765457999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
+++||||+|.+|++||+|||.++. ..++++++++++.++++++++++|.|+||.++++|.+||||||||++||||++++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998764 4688999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEE
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 951 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl 951 (1128)
|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999988899999999999999999999985
No 47
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.1e-66 Score=630.95 Aligned_cols=201 Identities=23% Similarity=0.298 Sum_probs=164.4
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ + .+|
T Consensus 323 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 359999999999643 699999999999999999999999999999999999999999999954 1 159
Q ss_pred EEEcCCC-cccc-ccHhhccccCCC---C--CHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSP-VLFS-GTVRFNLDPFSE---H--SDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~-~lf~-~Tv~~nl~~~~~---~--~~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~LSgGqrqrl~lAr 893 (1128)
||+||++ .++. .|+++|+.+... . .+.+..++++.. |+.. .......+||||||||++|||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG~~qrv~la~ 458 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRF-----------NFKGGDQQKKVGVLSGGERNRLHLAK 458 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhC-----------CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 9999997 5654 499999864321 1 122222333332 3322 234445689999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeC-CEEEE-ecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS-GRVLE-YDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~-G~i~~-~g~~~~l~~~ 968 (1128)
|++.+|++|||||||++||+.+...+.+.|++. . .|||+|||+++++.. ||+|++|++ |++.+ .|+++++++.
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999999985 3 589999999999987 999999986 88874 5888777643
No 48
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-67 Score=633.49 Aligned_cols=435 Identities=21% Similarity=0.332 Sum_probs=326.4
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCcEEE
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTVAY 188 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i~~ 188 (1128)
++|++++|++ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 57999999999999999999999999999999999999998875432 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCCC------CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSA------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
++|++.++ ..||+||+.++.. .+.. +..++++..++. ........+|||||||||+||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHHHH
Confidence 99999775 6799999987631 1221 122223333322 122344578999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcch
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGE 336 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 336 (1128)
|||+.+|++|||||||++||+.+.+++++.+......|+|+|++||+++++. .||+|++|++|++++.|+.+++...
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 224 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD-- 224 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH--
Confidence 9999999999999999999999999999866554446899999999999886 4899999999999876653221000
Q ss_pred HHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHHHH
Q 001189 337 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 416 (1128)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~ 416 (1128)
..
T Consensus 225 ---~~--------------------------------------------------------------------------- 226 (491)
T PRK10982 225 ---KI--------------------------------------------------------------------------- 226 (491)
T ss_pred ---HH---------------------------------------------------------------------------
Confidence 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 417 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 496 (1128)
Q Consensus 417 ~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 496 (1128)
T Consensus 227 -------------------------------------------------------------------------------- 226 (491)
T PRK10982 227 -------------------------------------------------------------------------------- 226 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 497 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 576 (1128)
Q Consensus 497 ~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 576 (1128)
..++
T Consensus 227 ----------------------~~~~------------------------------------------------------ 230 (491)
T PRK10982 227 ----------------------IAMM------------------------------------------------------ 230 (491)
T ss_pred ----------------------HHHH------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 577 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 656 (1128)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~ 656 (1128)
+
T Consensus 231 --~----------------------------------------------------------------------------- 231 (491)
T PRK10982 231 --V----------------------------------------------------------------------------- 231 (491)
T ss_pred --h-----------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCC
Q 001189 657 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 736 (1128)
Q Consensus 657 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~ 736 (1128)
... . .+ ..+... .+
T Consensus 232 -----------~~~-----------------------~------------------~~-----~~~~~~-------~~-- 245 (491)
T PRK10982 232 -----------GRS-----------------------L------------------TQ-----RFPDKE-------NK-- 245 (491)
T ss_pred -----------CCC-----------------------c------------------cc-----cccccc-------CC--
Confidence 000 0 00 000000 00
Q ss_pred CCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001189 737 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 737 ~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 816 (1128)
+.+..|+++|++++| +++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++...++..
T Consensus 246 --~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 246 --PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE 319 (491)
T ss_pred --CCCcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHH
Confidence 011248999999975 25999999999999999999999999999999999999999999999999998766543
Q ss_pred -hhhceEEEcCCCc---ccc-ccHhhc-----cccCCC----CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCC
Q 001189 817 -LRKILGIIPQSPV---LFS-GTVRFN-----LDPFSE----HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENF 881 (1128)
Q Consensus 817 -~r~~i~~v~Q~~~---lf~-~Tv~~n-----l~~~~~----~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~L 881 (1128)
+|+.++|+||++. +|. .|+.+| +..+.. ....+.. ..+.++++.+ |+. ........+|
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~L 392 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGSL 392 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccccC
Confidence 4677999999963 555 377665 321111 1111111 1223344443 331 1235555689
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001189 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 882 SgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
|||||||++||||++.+|+||||||||+|||+.+.+.+++.|+++. +++|||+|||+++++.. |||+++|++|+++..
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 57999999999999987 999999999999988
Q ss_pred cChhH
Q 001189 960 DTPEE 964 (1128)
Q Consensus 960 g~~~~ 964 (1128)
+++++
T Consensus 473 ~~~~~ 477 (491)
T PRK10982 473 VDTKT 477 (491)
T ss_pred Ecccc
Confidence 77643
No 49
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.1e-67 Score=632.50 Aligned_cols=439 Identities=24% Similarity=0.340 Sum_probs=328.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 4899999999963 46999999999999999999999999999999999999998876432 01248
Q ss_pred EEEecCCCC---------CcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVSWI---------FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~~l---------~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|++.+ +..|+++|+.++.. ..++..++++..++.+..+.. ..+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLDRR-----------FKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhhCC-----------cccCCHHHHHHHHHH
Confidence 999998643 24699999876521 234566677777776544333 358999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhcch
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 336 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 336 (1128)
|||+.+|++|||||||++||+.+.+++++.+.....+|+|+|++||+++++.. ||+|++|++|+++..|+++++.....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 227 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchh
Confidence 99999999999999999999999999998765544458999999999998765 89999999999998776554321100
Q ss_pred HHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHHHH
Q 001189 337 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 416 (1128)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~ 416 (1128)
...+..
T Consensus 228 -~~~~~~------------------------------------------------------------------------- 233 (490)
T PRK10938 228 -VAQLAH------------------------------------------------------------------------- 233 (490)
T ss_pred -hhhhhh-------------------------------------------------------------------------
Confidence 000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 417 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 496 (1128)
Q Consensus 417 ~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 496 (1128)
T Consensus 234 -------------------------------------------------------------------------------- 233 (490)
T PRK10938 234 -------------------------------------------------------------------------------- 233 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 497 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 576 (1128)
Q Consensus 497 ~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 576 (1128)
T Consensus 234 -------------------------------------------------------------------------------- 233 (490)
T PRK10938 234 -------------------------------------------------------------------------------- 233 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 577 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 656 (1128)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~ 656 (1128)
.+ .+..
T Consensus 234 ------~~---~~~~----------------------------------------------------------------- 239 (490)
T PRK10938 234 ------SE---QLEG----------------------------------------------------------------- 239 (490)
T ss_pred ------hh---ccCc-----------------------------------------------------------------
Confidence 00 0000
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CccccCCCCCC
Q 001189 657 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSE-APLVIESNRPP 735 (1128)
Q Consensus 657 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e-~~~~~~~~~~~ 735 (1128)
.+.+.. .+.. ... .+
T Consensus 240 --------------------------------------------------------------~~~~~~~~~~~-~~~-~~ 255 (490)
T PRK10938 240 --------------------------------------------------------------VQLPEPDEPSA-RHA-LP 255 (490)
T ss_pred --------------------------------------------------------------cccCccccccc-ccc-cC
Confidence 000000 0000 000 00
Q ss_pred CCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEecCC-CC
Q 001189 736 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAK-FG 813 (1128)
Q Consensus 736 ~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-~~G~I~i~g~~i~~-~~ 813 (1128)
.....|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.. .+
T Consensus 256 ---~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 256 ---ANEPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred ---CCCceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC
Confidence 01124999999999964 3699999999999999999999999999999999998875 69999999987632 23
Q ss_pred hHHhhhceEEEcCCCcccc---ccHhhccccC--C------CCCH---HHHHHHHHHhcHHHHHHHccCCcch-hhhcCC
Q 001189 814 LMDLRKILGIIPQSPVLFS---GTVRFNLDPF--S------EHSD---ADLWEALERAHLKDAIRRNSLGLDA-QVSEAG 878 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~~~lf~---~Tv~~nl~~~--~------~~~~---~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g 878 (1128)
....|++|+|+||++.++. .++++++.+. . .... +++.++++.. |++. ......
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~ 399 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDIL-----------GIDKRTADAPF 399 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc-----------CCchhhccCch
Confidence 3446788999999986542 3677665321 1 0111 2233344443 3433 334445
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-C-cEEEEeecCchhhhh--cCEEEEEeCC
Q 001189 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID--CDRILLLDSG 954 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~-~Tvi~vtH~l~~~~~--~D~i~vl~~G 954 (1128)
.+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ + .|||+|||+++++.. ||++++|++|
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDG 479 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCC
Confidence 68999999999999999999999999999999999999999999998753 4 479999999999975 8999999999
Q ss_pred EEEEec
Q 001189 955 RVLEYD 960 (1128)
Q Consensus 955 ~i~~~g 960 (1128)
++++.-
T Consensus 480 ~i~~~~ 485 (490)
T PRK10938 480 DIYRYV 485 (490)
T ss_pred ceEEee
Confidence 998753
No 50
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2e-65 Score=626.48 Aligned_cols=478 Identities=23% Similarity=0.268 Sum_probs=328.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee-cCcEEEEecCCCCC-
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-RGTVAYVPQVSWIF- 196 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-~~~i~~v~Q~~~l~- 196 (1128)
.++++|++++|+. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+... +..||||+|+|+++
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 5899999999962 3579999999999999999999999999999999999999998765432 34699999999987
Q ss_pred cccHHHHHhcCCCC------------------CH---------HHHHHHHHHhCcH-------HHHhcCCCCCcccccCC
Q 001189 197 NATVRDNILFGSAF------------------EP---------ARYEKAIDVTSLQ-------HDLDLLPGGDVTEIGER 242 (1128)
Q Consensus 197 ~~Tv~eni~~g~~~------------------~~---------~~~~~~~~~~~l~-------~~~~~l~~g~~t~vg~~ 242 (1128)
+.||+|||.++... +. .++.++++.++.. +.++.+ |.. .....
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cccCc
Confidence 56999999875210 01 1233333344422 112222 111 12445
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCe
Q 001189 243 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 321 (1128)
Q Consensus 243 g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 321 (1128)
..+|||||||||+|||||+.+|++|||||||++||+.+.+++.+.+.. . +.|+|+|||+++++.. ||+|++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~-~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-Y--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 678999999999999999999999999999999999999999886543 2 3699999999999876 79999999999
Q ss_pred Ee-eecChhHHhhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhh
Q 001189 322 VK-EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEER 400 (1128)
Q Consensus 322 i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1128)
++ ..|+++++.+..... . ... ..
T Consensus 236 i~~~~g~~~~~~~~~~~~--~-~~~-----------------------------------------------------~~ 259 (552)
T TIGR03719 236 GIPWEGNYSSWLEQKEKR--L-EQE-----------------------------------------------------EK 259 (552)
T ss_pred EEEecCCHHHHHHHHHHH--H-HHH-----------------------------------------------------HH
Confidence 76 678877664321000 0 000 00
Q ss_pred hcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 001189 401 ETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS 480 (1128)
Q Consensus 401 ~~g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 480 (1128)
.+..+
T Consensus 260 --------~~~~~------------------------------------------------------------------- 264 (552)
T TIGR03719 260 --------EESAR------------------------------------------------------------------- 264 (552)
T ss_pred --------HHHHH-------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 481 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM 560 (1128)
Q Consensus 481 ~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1128)
T Consensus 265 -------------------------------------------------------------------------------- 264 (552)
T TIGR03719 265 -------------------------------------------------------------------------------- 264 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 561 SLWAIMPLLLLFYAAYLYYQSTAREVKRLDSI-TRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM 639 (1128)
Q Consensus 561 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1128)
.+++++.... .+.+... ++ ....
T Consensus 265 ----------------------~~~~~~~~~~~~~~~~~~------------~~-~~~~--------------------- 288 (552)
T TIGR03719 265 ----------------------QKALKRELEWVRSSPKAR------------QA-KSKA--------------------- 288 (552)
T ss_pred ----------------------HHHHHHHHHHHHhhhhhH------------HH-HHHH---------------------
Confidence 0000000000 0000000 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001189 640 GANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 719 (1128)
Q Consensus 640 ~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~ 719 (1128)
.....++..+
T Consensus 289 --------------------------------------------------------------------~~~~~~~~~~-- 298 (552)
T TIGR03719 289 --------------------------------------------------------------------RLARYEELLS-- 298 (552)
T ss_pred --------------------------------------------------------------------HHHHHHhhhh--
Confidence 0000000000
Q ss_pred cCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Q 001189 720 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799 (1128)
Q Consensus 720 ~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~ 799 (1128)
..++..+.......+...-+.+..|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~ 376 (552)
T TIGR03719 299 QEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS 376 (552)
T ss_pred hcccccCCCceeecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 000000000000000000011235999999999964 369999999999999999999999999999999999999999
Q ss_pred ceEEECCEecCCCChHHhhhceEEEcCCCc-ccc-ccHhhccccCCC---CC--HHHHHHHHHHhcHHHHHHHccCCcch
Q 001189 800 GRILIDGFDIAKFGLMDLRKILGIIPQSPV-LFS-GTVRFNLDPFSE---HS--DADLWEALERAHLKDAIRRNSLGLDA 872 (1128)
Q Consensus 800 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~-~Tv~~nl~~~~~---~~--~~~i~~~l~~~~l~~~i~~lp~Gldt 872 (1128)
|+|.+++ + ..|+|+||++. ++. .|+++|+..... .. +.+..+. ++.+ |++.
T Consensus 377 G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~ 434 (552)
T TIGR03719 377 GTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAY---------VGRF--NFKG 434 (552)
T ss_pred eEEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHH---------HHhC--CCCh
Confidence 9999954 1 16999999973 564 499999965321 11 1122223 3332 3432
Q ss_pred -hhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEE
Q 001189 873 -QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILL 950 (1128)
Q Consensus 873 -~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~v 950 (1128)
.......+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++. ++|||+|||+++++.. ||+|++
T Consensus 435 ~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~ 512 (552)
T TIGR03719 435 SDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDRWFLDRIATHILA 512 (552)
T ss_pred hHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEE
Confidence 234445689999999999999999999999999999999999999999999986 3589999999999987 999999
Q ss_pred EeC-CEEEE-ecChhHHhh
Q 001189 951 LDS-GRVLE-YDTPEELLS 967 (1128)
Q Consensus 951 l~~-G~i~~-~g~~~~l~~ 967 (1128)
|++ |+++. .|+++++.+
T Consensus 513 l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 513 FEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred EECCCeEEEeCCCHHHHHH
Confidence 996 68774 477766543
No 51
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.9e-64 Score=625.92 Aligned_cols=199 Identities=22% Similarity=0.337 Sum_probs=164.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5999999999964 36999999999999999999999999999999999999999999998 4322 599
Q ss_pred EEcCCC-ccccc-cHhhccccCCC-C--C--HHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSP-VLFSG-TVRFNLDPFSE-H--S--DADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~-~lf~~-Tv~~nl~~~~~-~--~--~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~lAra 894 (1128)
|++|++ .++.. ||.+|+..... . . ..++.+.++.. |+. .........|||||||||+||||
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDF-----------LFHPKRAMTPVKALSGGERNRLLLARL 454 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhc-----------CCCHHHHhChhhhCCHHHHHHHHHHHH
Confidence 999986 46654 99999864321 1 1 22233333332 232 12334446799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe-CCEEEEe-cChhHHhh
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-SGRVLEY-DTPEELLS 967 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~-~G~i~~~-g~~~~l~~ 967 (1128)
++.+|++|||||||++||+.+...+.+.|++. ++|||+|||+++++.. ||+|++|+ +|++.++ |++++++.
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999874 5699999999999987 99999998 8999886 88988864
No 52
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.9e-63 Score=602.91 Aligned_cols=524 Identities=18% Similarity=0.210 Sum_probs=381.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCC-C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-G-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 503 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 503 (1128)
.+++.++...+....++.+....|....... . ...+..+++++.++..++.+++.++....+.+....++.+++++++
T Consensus 11 ~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 90 (544)
T TIGR01842 11 VGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASF 90 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555666666665554321111 1 1223334444455566777888888888999999999999999999
Q ss_pred cCCccccccCChhHHHHHHhhchhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 504 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAV-FVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 582 (1128)
Q Consensus 504 ~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 582 (1128)
+.|+.. .+..++++++|++.+...+.. ....++..++.++.. +++..++++..++++..+++++.+..+..+.
T Consensus 91 ~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~ 164 (544)
T TIGR01842 91 SATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLVGLALLNNRA 164 (544)
T ss_pred cCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999842 356788999999999876544 233333333333322 3334444433332222122222222222333
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001189 583 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLMIWL 659 (1128)
Q Consensus 583 ~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~---~~~~~~~~ 659 (1128)
.++..+......+...+++.|+++|+++||+|+.++++.+++.+..+...+..........+......+ +..++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (544)
T TIGR01842 165 TKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLG 244 (544)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333344455667788999999999999999999888887766665544433222222222221111 12222222
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 660 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 660 ~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
++.+.+. .+..+ .+.+..++.++..+..++..+............+.+|+.++++.+++.... ...+ +
T Consensus 245 ~g~~l~~-~g~it-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~---~ 312 (544)
T TIGR01842 245 LGAYLAI-DGEIT-----PGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLP---E 312 (544)
T ss_pred HHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCC---C
Confidence 2222222 22222 122222344445566677777777778888999999999998766543211 1111 2
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
..+.|+++||+|+|+++.+++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.+.+|+
T Consensus 313 ~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 23579999999999755457999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
.++|+||+|.+|++|++||+..+.+ .++++++++++.++++++++++|.|+||.++++|.+||||||||++||||++++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986554 689999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|++||||||||+||+++++.+.+.|++.. +++|+|+||||++.+..||+|++|++|++++.|+|+++++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999875 5799999999999988899999999999999999999975
No 53
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=7.5e-65 Score=602.09 Aligned_cols=484 Identities=26% Similarity=0.357 Sum_probs=338.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecC-cEEEEecCCCCC-
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVPQVSWIF- 196 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~-~i~~v~Q~~~l~- 196 (1128)
.|.++|++++|+ ++++|+++||++.+|+++||||+|||||||||++|+|...|++|.+....+ +|+|++|++.+.
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 589999999995 478999999999999999999999999999999999999999887665544 799999999987
Q ss_pred cccHHHHHhcCCCCC---HHHHHHHHH------------------H-------hCcHHHHhcCCCCCcccccCCCCCCCh
Q 001189 197 NATVRDNILFGSAFE---PARYEKAID------------------V-------TSLQHDLDLLPGGDVTEIGERGVNISG 248 (1128)
Q Consensus 197 ~~Tv~eni~~g~~~~---~~~~~~~~~------------------~-------~~l~~~~~~l~~g~~t~vg~~g~~LSG 248 (1128)
..||.+.+..+...- ..+++.+.. . ......+..+. .... .....+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg--~~~~-~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLG--FPDE-DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCC--CCcc-cCchhhcCH
Confidence 569999998764210 011111110 0 01111111121 1111 334578999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEe-eec
Q 001189 249 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK-EEG 326 (1128)
Q Consensus 249 GQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g 326 (1128)
|||.|++|||||..+||+|||||||||||.++..|+.+.+.. .+| |+|+||||++||+. |++|+.+++|++. +.|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~--~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 999999999999999999999999999999999999987653 356 99999999999997 6999999999765 577
Q ss_pred ChhHHhhcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccch
Q 001189 327 TFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVS 406 (1128)
Q Consensus 327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 406 (1128)
+|+.+.+............. + + .+....
T Consensus 234 ny~~~~~~r~~~~~~~~~~~-------~------------------------------------~----~~~~~~----- 261 (530)
T COG0488 234 NYSSYLEQKAERLRQEAAAY-------E------------------------------------K----QQKELA----- 261 (530)
T ss_pred CHHHHHHHHHHHHHHHHHHH-------H------------------------------------H----HHHHHH-----
Confidence 77765543211100000000 0 0 000000
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 407 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIIS 486 (1128)
Q Consensus 407 ~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 486 (1128)
. +..|
T Consensus 262 -----~-------------------------------~~~~--------------------------------------- 266 (530)
T COG0488 262 -----K-------------------------------EQEW--------------------------------------- 266 (530)
T ss_pred -----H-------------------------------HHHH---------------------------------------
Confidence 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 487 SLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIM 566 (1128)
Q Consensus 487 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (1128)
++|+..
T Consensus 267 --------------------------------i~r~~~------------------------------------------ 272 (530)
T COG0488 267 --------------------------------IRRGKA------------------------------------------ 272 (530)
T ss_pred --------------------------------HHHHHh------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 567 PLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLA 646 (1128)
Q Consensus 567 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 646 (1128)
...++
T Consensus 273 ------------~~~~~--------------------------------------------------------------- 277 (530)
T COG0488 273 ------------AASKA--------------------------------------------------------------- 277 (530)
T ss_pred ------------ccchH---------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCC
Q 001189 647 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY--IELPSE 724 (1128)
Q Consensus 647 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~--~~~~~e 724 (1128)
...+......+++.+- ...|..
T Consensus 278 --------------------------------------------------------k~a~sr~k~l~k~~~~~~~~~~~~ 301 (530)
T COG0488 278 --------------------------------------------------------KKAKSRIKRLEKLEARLAEERPVE 301 (530)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHhhhhhccccc
Confidence 0000000111111110 000110
Q ss_pred CccccCCCCCCCC-CCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Q 001189 725 APLVIESNRPPPG-WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 803 (1128)
Q Consensus 725 ~~~~~~~~~~~~~-~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~ 803 (1128)
......-..+++. -..+..++++|+++.|.++ +++++++||.|.+|++|||+||||+|||||+++|.|...|.+|+|.
T Consensus 302 ~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~ 380 (530)
T COG0488 302 EGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK 380 (530)
T ss_pred ccccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEE
Confidence 0000000001111 1223469999999999654 5799999999999999999999999999999999999999999998
Q ss_pred ECCEecCCCChHHhhhceEEEcCCC-cccc-ccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 804 IDGFDIAKFGLMDLRKILGIIPQSP-VLFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 804 i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
++- .-++||++|+. .++. .|+-+++.... ...+.+++..|.+.++..--. ......
T Consensus 381 ~g~-----------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~ 439 (530)
T COG0488 381 VGE-----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGV 439 (530)
T ss_pred eCC-----------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhh
Confidence 873 13699999998 3443 38888886443 223566777777665543221 233457
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
||||||.||.||+.++.+|++|||||||++||.++...+.++|.+ ...|||+||||.+++.. |++|+++++ ++..+
T Consensus 440 LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~ 516 (530)
T COG0488 440 LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEF 516 (530)
T ss_pred cCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEc
Confidence 999999999999999999999999999999999999999999988 57799999999999999 999999999 77777
Q ss_pred -cChhHHhhc
Q 001189 960 -DTPEELLSN 968 (1128)
Q Consensus 960 -g~~~~l~~~ 968 (1128)
|+++++.+.
T Consensus 517 ~g~y~~y~~~ 526 (530)
T COG0488 517 EGGYEDYLEQ 526 (530)
T ss_pred CCCHHHHHHh
Confidence 899888764
No 54
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.6e-64 Score=666.98 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=178.3
Q ss_pred cEEEEEEEEEeC--CCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHh
Q 001189 743 SIKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~--~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
.++++||+++|+ ++.+++|+|||++|+|||++||+||||||||||+++|+|..+ |++|+|.+||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999995 233579999999999999999999999999999999999997 78899999999984 257
Q ss_pred hhceEEEcCCCccc-cccHhhccccCC------CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 818 RKILGIIPQSPVLF-SGTVRFNLDPFS------EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf-~~Tv~~nl~~~~------~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
|+.++||||++.++ ..||+|||.+.. ..+++ .+.++++..++.+ -.|+.+++.+.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 88999999998655 569999997521 12332 3445555555433 357788887778999999
Q ss_pred HHHHHHHHhccCCC-EEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhh--hhcCEEEEEeCC-EEEEecC
Q 001189 887 QLLSLSRALLRRSK-ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI--IDCDRILLLDSG-RVLEYDT 961 (1128)
Q Consensus 887 qrl~lArall~~p~-iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~--~~~D~i~vl~~G-~i~~~g~ 961 (1128)
||++|||||+.+|+ ||+|||||||||+.+...|++.|++.. +++|||+++|+++.. ..||+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999874 579999999999974 459999999987 9999999
Q ss_pred hhH
Q 001189 962 PEE 964 (1128)
Q Consensus 962 ~~~ 964 (1128)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 743
No 55
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.7e-63 Score=653.23 Aligned_cols=544 Identities=20% Similarity=0.273 Sum_probs=407.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRA 505 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~ 505 (1128)
.+++.++...+....+..++...+.... ......+...+++++++.+++.+++.+++...+.+...+++.+++++++++
T Consensus 65 ~~i~~~~~~~~~p~~~~i~g~iid~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~ 143 (1466)
T PTZ00265 65 SFVCATISGGTLPFFVSVFGVIMKNMNL-GENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQ 143 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3334444444444444555555443211 112233445566667778888999999999999999999999999999999
Q ss_pred CccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 506 PMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTARE 585 (1128)
Q Consensus 506 p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 585 (1128)
|+.||+.++.|++++|++.|+..+...+...+..++..++.+++.++++++.+|...++++.++++++++..++.+..+.
T Consensus 144 ~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~ 223 (1466)
T PTZ00265 144 DGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKI 223 (1466)
T ss_pred CHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988877777777777777777777777777655544443333333333444444444
Q ss_pred HHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 001189 586 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIR----LEIVGGLMIWLTA 661 (1128)
Q Consensus 586 ~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~----l~~~~~~~~~~~~ 661 (1128)
..+......+...+.+.|++.|+++||+|+.++++.+++.+......+..........+.... ..+..++++|+++
T Consensus 224 ~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 303 (1466)
T PTZ00265 224 NKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGT 303 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445667789999999999999999999998888776666555443332222221111 1122233333333
Q ss_pred HHHHHhc-------CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCC
Q 001189 662 TFAVVQN-------GSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP 734 (1128)
Q Consensus 662 ~~~v~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~ 734 (1128)
.+ +..+ +..+....++..++.++++ ..+..+............+.+|+.++++.+++.+... .
T Consensus 304 ~l-v~~g~~~~~~~~~~t~g~v~~~~~~~l~~~-----~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~-~--- 373 (1466)
T PTZ00265 304 RI-IISDLSNQQPNNDFHGGSVISILLGVLISM-----FMLTIILPNITEYMKSLEATNSLYEIINRKPLVENND-D--- 373 (1466)
T ss_pred HH-HHcCCcccccccccchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-C---
Confidence 33 2221 1111111122222222211 1222334445667778899999999988665432111 1
Q ss_pred CCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-CCEecCCC
Q 001189 735 PPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DGFDIAKF 812 (1128)
Q Consensus 735 ~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i-~g~~i~~~ 812 (1128)
....+..+.|+|+||+|+|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+ ||.++.++
T Consensus 374 ~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~ 453 (1466)
T PTZ00265 374 GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI 453 (1466)
T ss_pred CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC
Confidence 1112223479999999999743 236999999999999999999999999999999999999999999999 57999999
Q ss_pred ChHHhhhceEEEcCCCccccccHhhccccCC-------------------------------------------------
Q 001189 813 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFS------------------------------------------------- 843 (1128)
Q Consensus 813 ~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~------------------------------------------------- 843 (1128)
+...+|++|+||||+|.+|++||++||.+..
T Consensus 454 ~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 454 NLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred CHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 9999999999999999999999999997631
Q ss_pred ---------CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHH
Q 001189 844 ---------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 914 (1128)
Q Consensus 844 ---------~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~ 914 (1128)
..++++++++++.+++++++.++|.|+||.+++.|.+||||||||++|||||+++|+|||||||||+||++
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 13568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCC--------------------------------------
Q 001189 915 TDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSG-------------------------------------- 954 (1128)
Q Consensus 915 t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G-------------------------------------- 954 (1128)
+++.|++.|++.. +++|+|+||||++++..||+|++|++|
T Consensus 614 se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1466)
T PTZ00265 614 SEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNN 693 (1466)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccccccccc
Confidence 9999999999875 479999999999999889999999986
Q ss_pred ---------EEEEecChhHHhhcCCCchHHHHHhh
Q 001189 955 ---------RVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 955 ---------~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
+|+|+|+|+||+++.++.|+.+++.+
T Consensus 694 ~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 694 NNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred ccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 59999999999986678999998654
No 56
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6e-64 Score=545.23 Aligned_cols=454 Identities=28% Similarity=0.465 Sum_probs=345.9
Q ss_pred CcEEEEeEEEEeCCC-CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCCce-----------
Q 001189 118 PAISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASA----------- 180 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~-~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-----~g~~~----------- 180 (1128)
+.+.++|++..|... +...++++|||+|++||.+||||+||||||-..+.++|+++.. +|.+.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 458999999888632 3467999999999999999999999999999999999998641 12111
Q ss_pred ----eecC-cEEEEecCCCC-Cc--ccHHH----HHhcCCCCC----HHHHHHHHHHhCcHH---HHhcCCCCCcccccC
Q 001189 181 ----VIRG-TVAYVPQVSWI-FN--ATVRD----NILFGSAFE----PARYEKAIDVTSLQH---DLDLLPGGDVTEIGE 241 (1128)
Q Consensus 181 ----~~~~-~i~~v~Q~~~l-~~--~Tv~e----ni~~g~~~~----~~~~~~~~~~~~l~~---~~~~l~~g~~t~vg~ 241 (1128)
.+|+ +|++++|+|-- .| -||.. -|......+ .++..+.++..++.+ .++..|
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP--------- 155 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP--------- 155 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC---------
Confidence 1233 69999999953 22 24444 444433222 345556666666644 244444
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeC
Q 001189 242 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE 319 (1128)
Q Consensus 242 ~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~ 319 (1128)
..|||||||||-||.||..+|++||-||||.|||.....+|.+.+.... ..|..+++||||+..++. ||||+||.+
T Consensus 156 --HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~ 233 (534)
T COG4172 156 --HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH 233 (534)
T ss_pred --cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEec
Confidence 5899999999999999999999999999999999999999998654433 348999999999999986 799999999
Q ss_pred CeEeeecChhHHhhcch-HHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhh
Q 001189 320 GMVKEEGTFEDLSNNGE-LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQE 398 (1128)
Q Consensus 320 G~i~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1128)
|++++.|+.+++...+. .|.+..-++
T Consensus 234 G~ivE~~~t~~lF~~PqHpYTr~Ll~a----------------------------------------------------- 260 (534)
T COG4172 234 GEIVETGTTETLFAAPQHPYTRKLLAA----------------------------------------------------- 260 (534)
T ss_pred cEEeecCcHHHHhhCCCChHHHHHHhc-----------------------------------------------------
Confidence 99999998776654321 111111000
Q ss_pred hhhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHH
Q 001189 399 ERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLA 478 (1128)
Q Consensus 399 ~~~~g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 478 (1128)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 479 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS 558 (1128)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1128)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 559 TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 638 (1128)
Q Consensus 559 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1128)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001189 639 MGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY 718 (1128)
Q Consensus 639 ~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~ 718 (1128)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCC---------CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHH
Q 001189 719 IELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 789 (1128)
Q Consensus 719 ~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~---------~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~ 789 (1128)
.|.-. .++........++.+||...|+- +...++++|||++++||.+||||.||||||||-.
T Consensus 261 --eP~g~-------~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~ 331 (534)
T COG4172 261 --EPSGD-------PPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGL 331 (534)
T ss_pred --CCCCC-------CCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHH
Confidence 00000 00000001123566666666631 1125899999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEecCCCChHH---hhhceEEEcCCCc--ccc-ccHhhccc----cCC-C----CCHHHHHHHH
Q 001189 790 TLFRIVELERGRILIDGFDIAKFGLMD---LRKILGIIPQSPV--LFS-GTVRFNLD----PFS-E----HSDADLWEAL 854 (1128)
Q Consensus 790 ~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~~i~~v~Q~~~--lf~-~Tv~~nl~----~~~-~----~~~~~i~~~l 854 (1128)
+|+|+++++ |+|.++|.++..++.++ +|+++-+|+|||+ |-. .||.+-+. ... . ..++++.++|
T Consensus 332 allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL 410 (534)
T COG4172 332 ALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410 (534)
T ss_pred HHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHH
Confidence 999999876 99999999999888776 5889999999996 322 36655332 222 1 1256678888
Q ss_pred HHhcHHHHH-HHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcE
Q 001189 855 ERAHLKDAI-RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCT 931 (1128)
Q Consensus 855 ~~~~l~~~i-~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~T 931 (1128)
+.+|++... .+.| ..+|||||||++||||++-+|++++||||||+||..-...|.+.|+++- .+-+
T Consensus 411 ~EVGLDp~~r~RYP-----------hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~Ls 479 (534)
T COG4172 411 EEVGLDPATRNRYP-----------HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLS 479 (534)
T ss_pred HHcCCChhHhhcCC-----------cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCe
Confidence 888776432 3344 5799999999999999999999999999999999999999999999864 3679
Q ss_pred EEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchHHH
Q 001189 932 MLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 932 vi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 976 (1128)
-++||||+..+.. ||+|+||.+|+|||+|+.+++..++...|.+.
T Consensus 480 YLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 480 YLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred EEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 9999999999998 99999999999999999999999887666543
No 57
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-63 Score=542.68 Aligned_cols=487 Identities=25% Similarity=0.378 Sum_probs=373.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001189 481 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV-ST 559 (1128)
Q Consensus 481 ~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 559 (1128)
.++...+..+.+.+--..|.|+.++.+.|.-+..+|-+...+..-..-++..+...+...+..++.+....+..... .+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 34455666777778888899999999999877666654443333333333333344444444444433333322222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 560 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM 639 (1128)
Q Consensus 560 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1128)
+...+.+..++++.+............+|....+.+...+.-.+++-+..++|.|+.|+.+..++...++.+.+......
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 33333333333222222222222234455555666667778889999999999999999999999999998888877666
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 640 GANRWLAIRLEIVGGLMIW---LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 716 (1128)
Q Consensus 640 ~~~~wl~~~l~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~ 716 (1128)
.+-.|+.+.-..+...... +.+...+..+ ..+ .+.+...-.+..+++.++..+-..+..+.+.....++..
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g-~~T-----vgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mf 237 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEG-QLT-----VGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMF 237 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhc-cCC-----chhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHH
Confidence 6666666654443322111 1111222211 111 122333445666777777777777778888888888888
Q ss_pred hhhcCCCCCccccCCCCCCCCCC-CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 717 NYIELPSEAPLVIESNRPPPGWP-SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 717 ~~~~~~~e~~~~~~~~~~~~~~p-~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++.+.+.+.. +....++-|| ..|.+.|+||+|.|.+. +++|+++||++++|+++||||++|+||||++++|+|+|
T Consensus 238 dLl~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 238 DLLDVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred Hhhccchhhc---cCCCCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 8877665432 2223345564 45789999999999876 48999999999999999999999999999999999999
Q ss_pred CCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhh
Q 001189 796 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQV 874 (1128)
Q Consensus 796 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v 874 (1128)
++++|.|.+||.|+.....+.+|+.||+||||..||+.|+..|+.+..+ .+++|++.+++.++++++++.+|.||+|.|
T Consensus 314 D~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~V 393 (497)
T COG5265 314 DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGV 393 (497)
T ss_pred CCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhccc
Confidence 9999999999999999999999999999999999999999999987654 689999999999999999999999999999
Q ss_pred hcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCC
Q 001189 875 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 954 (1128)
Q Consensus 875 ~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G 954 (1128)
||+|-.||||||||++|||+++++|+||+|||+||+||..||+.||..|++...++|.++|+||++++.+||.|+||++|
T Consensus 394 gerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g 473 (497)
T COG5265 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNG 473 (497)
T ss_pred chheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecChhHHhhcCCCchHHHHH
Q 001189 955 RVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 955 ~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
+|+|.|+|+||+++ +|.|.+|+.
T Consensus 474 ~i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 474 RIVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred EEEecCcHHHHHHc-CChHHHHhc
Confidence 99999999999998 678988874
No 58
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=8.2e-62 Score=601.56 Aligned_cols=200 Identities=19% Similarity=0.287 Sum_probs=162.9
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 459999999999543 3699999999999999999999999999999999999999999999875 2479
Q ss_pred EEEcCCCccccccHhhccc--c---CCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 822 GIIPQSPVLFSGTVRFNLD--P---FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~--~---~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
+|+||++. ...++.+|.. + +....++++.++++..++.+. ........||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~----------~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChH----------HhcCCccccCHHHHHHHHHHHHHh
Confidence 99999873 2223444421 1 112345556666666555321 223345689999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEE-EecChhHHh
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELL 966 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~-~~g~~~~l~ 966 (1128)
.+|++|||||||++||+.+...+.+.|.+. ++|||+|||+++++.. ||+|++|++|+++ ..|+++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999999874 4599999999999987 9999999999998 568887764
No 59
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.5e-60 Score=581.79 Aligned_cols=514 Identities=16% Similarity=0.128 Sum_probs=361.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 001189 429 CYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMV 508 (1128)
Q Consensus 429 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ 508 (1128)
+.++........+++++.+.+...... . .....++++.++..++.++..++....+.+...+++.++++++++.|+.
T Consensus 26 ~~~~~~~~~~~~~~~i~~~i~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~ 102 (555)
T TIGR01194 26 LGLAGGLAIIALLASINNAIHEENFLG-Q--GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIE 102 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccc-c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 333444444555556666654321110 1 1122233445556677788888888899999999999999999999999
Q ss_pred ccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 509 FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKR 588 (1128)
Q Consensus 509 ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 588 (1128)
||++.++|++++|+++|++.++..+.. ...++..+..++..+++++++++...++++.++++.+....+..+..++..+
T Consensus 103 ~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~ 181 (555)
T TIGR01194 103 EIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFH 181 (555)
T ss_pred HHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876643 3344444444555555555555544444333333322222222222223233
Q ss_pred HHHhhcccHHHHHHHHHcchHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 589 LDSITRSPVYAQFGEALNGLSTIRAYKAYD--RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVV 666 (1128)
Q Consensus 589 ~~~~~~s~~~~~~~E~l~g~~tIra~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~ 666 (1128)
......+.+.+.+.|.+.|++++|+|+.++ ...+.+.+..+...+.................++..+...+...+...
T Consensus 182 ~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (555)
T TIGR01194 182 AARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM 261 (555)
T ss_pred HHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677889999999999999999853 334444444443333322211111111111111111111100111101
Q ss_pred hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccc---cCCCCC--CCCCCCC
Q 001189 667 QNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLV---IESNRP--PPGWPSS 741 (1128)
Q Consensus 667 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~---~~~~~~--~~~~p~~ 741 (1128)
. +..+ .+.+..++.+...+..++..+............+.+|+.++++.+++++.. .+.... .+.....
T Consensus 262 ~-~~~t-----~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (555)
T TIGR01194 262 F-ASID-----AAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSV 335 (555)
T ss_pred h-cCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCC
Confidence 1 1111 122333344455566777777888888899999999999997643221111 000000 0111223
Q ss_pred ccEEEEEEEEEeCCC---CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 742 GSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~---~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
+.|+++||+|+|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+++..++|
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 579999999999753 23699999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
++++||||+|.+|++|+++|+. ...++++++++++.++++++++.+|.|+||. .+||||||||++||||++++
T Consensus 416 ~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~ 488 (555)
T TIGR01194 416 DLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLED 488 (555)
T ss_pred hhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999963 3457889999999999999999999999995 68999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHH-HH-cCCcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIR-EE-FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 959 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~-~~-~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~ 959 (1128)
|+|||||||||+||+++++.+++.+. .. .+++|+|+||||++++..||+|++|++|+++|.
T Consensus 489 ~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 489 RPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999988764 33 368999999999999989999999999999875
No 60
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.3e-58 Score=614.32 Aligned_cols=470 Identities=20% Similarity=0.264 Sum_probs=345.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 484 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 563 (1128)
Q Consensus 484 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1128)
...+.+....+...+|+++++.|..++.+.++|+++|++++|++.++...... ..+....+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l-~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQL-HTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677778889999999999999999999999999999999998876433 22222323333222222221111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 564 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 643 (1128)
Q Consensus 564 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1128)
+.++++++++++..++.+..+..++.....+....+.+.|.++|+++||+|++++.+.++..+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333333333333334433444455667889999999999999999999988877666554443333222222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001189 644 WLAIRLEIVGGL-MIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 722 (1128)
Q Consensus 644 wl~~~l~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~ 722 (1128)
+..+.......+ .+...+.+.+. ++..+. +.+..++++...+..++..+......+.....+.+|+.++++.+
T Consensus 525 ~~~~~~~~~~~~v~~~~fg~~~~~-~g~Lt~-----g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 525 FNSFILNSIPVLVTVVSFGVFTLL-GGDLTP-----ARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 222222221111 11112222222 333322 22223344445556666777777788888999999999998755
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-c
Q 001189 723 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-G 800 (1128)
Q Consensus 723 ~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~-G 800 (1128)
++.+.. . ++ ..+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++ |
T Consensus 599 e~~~~~---~-~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG 673 (1622)
T PLN03130 599 ERVLLP---N-PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA 673 (1622)
T ss_pred cccccc---C-Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCc
Confidence 432110 0 00 01123469999999999743 3579999999999999999999999999999999999999999 8
Q ss_pred eEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 801 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 801 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
+|.+ |.+|+||||+|++|++||||||.++.+.++++++++++.|++.++++.+|.|++|.+||+|.+
T Consensus 674 ~I~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~ 740 (1622)
T PLN03130 674 SVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVN 740 (1622)
T ss_pred eEEE-------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCC
Confidence 9974 568999999999999999999999888889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHH-HHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 959 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i-~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~ 959 (1128)
|||||||||+||||++++|+|||||||||+||+++++.| +++++...+++|+|+|||+++.+..||+|++|++|+|++.
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999876 4667776789999999999999999999999999999999
Q ss_pred cChhHHhhcCCCchHHHHHh
Q 001189 960 DTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 960 g~~~~l~~~~~~~~~~~~~~ 979 (1128)
|+++||+++. +.|..+...
T Consensus 821 Gt~~eL~~~~-~~~~~l~~~ 839 (1622)
T PLN03130 821 GTYEELSNNG-PLFQKLMEN 839 (1622)
T ss_pred CCHHHHHhcc-hhHHHHHHh
Confidence 9999999753 567766654
No 61
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.6e-58 Score=614.18 Aligned_cols=471 Identities=19% Similarity=0.240 Sum_probs=345.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 484 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 563 (1128)
Q Consensus 484 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1128)
...+.+....++..+|+++++.|..++++.++|+++|++++|++.++.... .+..+....+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456667777788899999999999999999999999999999999987653 2222222222222222222111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 564 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 643 (1128)
Q Consensus 564 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1128)
+.++++++++++..++.+..+..++.....+....+.+.|.++|+++||+|++++.+.+++.+..+...+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222222222333333333333344455577888999999999999999999988877766555444333322222
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001189 644 WLAIRLEIVGGLMI-WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 722 (1128)
Q Consensus 644 wl~~~l~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~ 722 (1128)
+..+.......++. +..+.+.+. ++..+ .+.+-.++++...+..++..+............+.+|+.++++.+
T Consensus 525 ~~~~~~~~~~~~~~~~~fg~~~v~-~~~lt-----~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~ 598 (1495)
T PLN03232 525 FNSFILNSIPVVVTLVSFGVFVLL-GGDLT-----PARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 32222222111111 112222222 33222 122233344555566667777777788888999999999998765
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCce
Q 001189 723 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801 (1128)
Q Consensus 723 ~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~ 801 (1128)
++.... . + +..+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|.
T Consensus 599 ~~~~~~---~-~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~ 673 (1495)
T PLN03232 599 ERILAQ---N-P-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS 673 (1495)
T ss_pred cccccc---c-C-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCC
Confidence 432110 0 1 111223569999999999752 357999999999999999999999999999999999999999987
Q ss_pred EEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001189 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 881 (1128)
Q Consensus 802 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~L 881 (1128)
+. .+|++|+||||+|++|++||||||.++.+.++++++++++.|++.+.++.+|.|++|.+||+|.+|
T Consensus 674 i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~L 741 (1495)
T PLN03232 674 SV------------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI 741 (1495)
T ss_pred EE------------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCccc
Confidence 63 357799999999999999999999988888899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHH-HHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEec
Q 001189 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ-KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 960 (1128)
Q Consensus 882 SgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~-~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g 960 (1128)
|||||||++||||++++|+|||||||||+||+++++.|. ++++...+++|+|+||||++.+..||+|++|++|++++.|
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999775 4566666889999999999999999999999999999999
Q ss_pred ChhHHhhcCCCchHHHHHh
Q 001189 961 TPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 961 ~~~~l~~~~~~~~~~~~~~ 979 (1128)
+++|++++. +.|..++..
T Consensus 822 t~~eL~~~~-~~~~~l~~~ 839 (1495)
T PLN03232 822 TFAELSKSG-SLFKKLMEN 839 (1495)
T ss_pred CHHHHHhcc-hhHHHHHHh
Confidence 999999754 567766654
No 62
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.1e-58 Score=608.49 Aligned_cols=211 Identities=26% Similarity=0.341 Sum_probs=173.1
Q ss_pred cEEEEEEEEEeCC-----------CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Q 001189 743 SIKFEDVVLRYRP-----------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDI 809 (1128)
Q Consensus 743 ~i~~~~v~~~y~~-----------~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i 809 (1128)
.+.++||++..+. +...+|+|||++|+|||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998741 123699999999999999999999999999999999999774 689999999876
Q ss_pred CCCChHHhhhceEEEcCCCccccc-cHhhccccCC------CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCC
Q 001189 810 AKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFS------EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAG 878 (1128)
Q Consensus 810 ~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~------~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g 878 (1128)
. ....|+.+|||+|++.++.. ||+|||.+.. ..+++ .+.+.++..++.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 24567789999999987764 9999996421 12222 24556666665543 244555332
Q ss_pred -CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh-h-hhcCEEEEEeC-
Q 001189 879 -ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILLLDS- 953 (1128)
Q Consensus 879 -~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~-~-~~~D~i~vl~~- 953 (1128)
..||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|++.. .++|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999865 47999999999984 4 44999999996
Q ss_pred CEEEEecChh
Q 001189 954 GRVLEYDTPE 963 (1128)
Q Consensus 954 G~i~~~g~~~ 963 (1128)
|+++..|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
No 63
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.2e-60 Score=579.56 Aligned_cols=191 Identities=21% Similarity=0.286 Sum_probs=160.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEcCCCccc-cccHhhccccCC-CC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 823 IIPQSPVLF-SGTVRFNLDPFS-EH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 823 ~v~Q~~~lf-~~Tv~~nl~~~~-~~-~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
|+||++.++ +.|+++|+.... .. ....+.++++..++. ........+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-----------~~~~~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-----------RLLDKNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-----------HHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998754 569999986431 11 122334445554444 3344445689999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++++.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998753 7899999999999987 999999964 8877776
No 64
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=6e-57 Score=551.93 Aligned_cols=464 Identities=16% Similarity=0.139 Sum_probs=324.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001189 472 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTF 551 (1128)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~ 551 (1128)
..++.++..++....+.+...+++..+++++++.|+.||+++++|++++|+++|++.+...+.. +..++..++.++..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3456677788888889999999999999999999999999999999999999999998764432 334444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHH---HHHHHHHHHHH
Q 001189 552 VLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY---DRMADINGKSM 628 (1128)
Q Consensus 552 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~---~~~~~~~~~~~ 628 (1128)
+++..+++...++++.++++++.+..+..+..+...+......+.+.+++.|.++|+++++ ++.+ +++.+.+.+..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 5555555554444333333333333333333333333334456678889999999999995 4332 34444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 629 DKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNG-SAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAEN 707 (1128)
Q Consensus 629 ~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~ 707 (1128)
+...+..................+..+ +++.+.+.... .... ...++.+..+...+..++..+.........
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 291 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLG---AIGLVFYMANSLGWAD----TNVAATYSLTLLFLRTPLLSAVGALPTLLS 291 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433322211111111000101111100 11111111100 0000 111122222233344566667777777888
Q ss_pred HHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHH
Q 001189 708 SLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 787 (1128)
Q Consensus 708 ~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTl 787 (1128)
...+.+|+.++.+.+.+.+.. ...+. +..+.|+++||+|+|+++ +++|+|+||+|+|||++||+||||||||||
T Consensus 292 ~~~a~~ri~~l~~~~~~~~~~--~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL 365 (547)
T PRK10522 292 AQVAFNKLNKLALAPYKAEFP--RPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTL 365 (547)
T ss_pred HHHHHHHHHHHhccccccccc--ccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHH
Confidence 899999999987554332111 11111 123569999999999743 469999999999999999999999999999
Q ss_pred HHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHcc
Q 001189 788 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 867 (1128)
Q Consensus 788 l~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp 867 (1128)
+++|+|+++|++|+|.+||+|+++++...+|++|+||||+|.+|++|+++| ....++++++++++.+++.+.+.. +
T Consensus 366 ~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~ 441 (547)
T PRK10522 366 AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-E 441 (547)
T ss_pred HHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-c
Confidence 999999999999999999999999999999999999999999999999998 224456677777777666554432 2
Q ss_pred CCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhc
Q 001189 868 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDC 945 (1128)
Q Consensus 868 ~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~ 945 (1128)
.|. .+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||++.+..|
T Consensus 442 ~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~ 516 (547)
T PRK10522 442 DGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHA 516 (547)
T ss_pred ccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhC
Confidence 221 1378999999999999999999999999999999999999999999987654 479999999999999999
Q ss_pred CEEEEEeCCEEEEe
Q 001189 946 DRILLLDSGRVLEY 959 (1128)
Q Consensus 946 D~i~vl~~G~i~~~ 959 (1128)
|+|++|++|+++|.
T Consensus 517 d~i~~l~~G~i~e~ 530 (547)
T PRK10522 517 DRLLEMRNGQLSEL 530 (547)
T ss_pred CEEEEEECCEEEEe
Confidence 99999999999987
No 65
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-59 Score=536.67 Aligned_cols=444 Identities=25% Similarity=0.345 Sum_probs=334.1
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecC
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 184 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 184 (1128)
+.++++|++++|+. -++|+++||++++||++|++|.||||||||+|+|+|.++|++|.+.. ...
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 46899999999974 57999999999999999999999999999999999999999875432 122
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC-------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.|+.|+|+..|+ +.||.|||.+|+.. |..++++..+. .++.+....+ ......+||+||||-|+|
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~--~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDID--PDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCC--hhhhhhhCCHHHHHHHHH
Confidence 499999999986 88999999998643 22333322211 1111110000 233446799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecCh-hHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF-EDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~-~~l~~~ 334 (1128)
||||..+++|+|||||||+|+....+.+|+.+.+...+|.++|+|||+++++.. ||||.||.||+.+..++. .++.
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~-- 234 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETS-- 234 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCC--
Confidence 999999999999999999999999999999776666789999999999998765 899999999998854321 1000
Q ss_pred chHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHHHH
Q 001189 335 GELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYK 414 (1128)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~ 414 (1128)
. .+
T Consensus 235 --------------------------------------------------------~-----~~---------------- 237 (500)
T COG1129 235 --------------------------------------------------------E-----DE---------------- 237 (500)
T ss_pred --------------------------------------------------------H-----HH----------------
Confidence 0 00
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 415 DALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRL 494 (1128)
Q Consensus 415 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 494 (1128)
T Consensus 238 -------------------------------------------------------------------------------- 237 (500)
T COG1129 238 -------------------------------------------------------------------------------- 237 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 495 HDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYA 574 (1128)
Q Consensus 495 ~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 574 (1128)
+ +..+.
T Consensus 238 ----------------------------------l-------v~~Mv--------------------------------- 243 (500)
T COG1129 238 ----------------------------------L-------VRLMV--------------------------------- 243 (500)
T ss_pred ----------------------------------H-------HHHhh---------------------------------
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 575 AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGG 654 (1128)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~ 654 (1128)
T Consensus 244 -------------------------------------------------------------------------------- 243 (500)
T COG1129 244 -------------------------------------------------------------------------------- 243 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCccccCCCC
Q 001189 655 LMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE-LPSEAPLVIESNR 733 (1128)
Q Consensus 655 ~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~-~~~e~~~~~~~~~ 733 (1128)
+ | ++.+ .|. + ...
T Consensus 244 -------------G---------------------------------------------r--~~~~~~~~--~-~~~--- 257 (500)
T COG1129 244 -------------G---------------------------------------------R--ELEDLFPE--P-PEE--- 257 (500)
T ss_pred -------------C---------------------------------------------c--chhhhccc--c-ccc---
Confidence 0 0 0000 000 0 000
Q ss_pred CCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC
Q 001189 734 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG 813 (1128)
Q Consensus 734 ~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~ 813 (1128)
-+....++++|++.. ..++|+||++++||++||.|--|||+|-++++|+|..++.+|+|.+||.++.-.+
T Consensus 258 ----~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~s 327 (500)
T COG1129 258 ----GIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRS 327 (500)
T ss_pred ----CCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCC
Confidence 001123677777643 2589999999999999999999999999999999999999999999999988777
Q ss_pred hH-HhhhceEEEcCCC---ccc-cccHhhccccC--CCCCHH-HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001189 814 LM-DLRKILGIIPQSP---VLF-SGTVRFNLDPF--SEHSDA-DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 885 (1128)
Q Consensus 814 ~~-~~r~~i~~v~Q~~---~lf-~~Tv~~nl~~~--~~~~~~-~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq 885 (1128)
+. ..+..|+|||.|- -+| ..+|++|+... ...... -+...-++....+++.++...-.. ......+||||+
T Consensus 328 p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-~~~~v~~LSGGN 406 (500)
T COG1129 328 PRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS-PEQPIGTLSGGN 406 (500)
T ss_pred HHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC-ccchhhcCCchh
Confidence 66 5677899999886 355 45999999643 111101 233444445556666665332111 123335799999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
+||+.|||+|..+|+||||||||.|+|..+++.|++.|+++. +|.+||+||.+++++.. ||||+||.+|+++..=+
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999976 57999999999999986 99999999999997533
No 66
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-59 Score=547.41 Aligned_cols=305 Identities=27% Similarity=0.430 Sum_probs=275.9
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCC-CCCC
Q 001189 40 VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLT-SGLP 118 (1128)
Q Consensus 40 ~~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~-~~~~ 118 (1128)
..+.++++|.+++..|.||++...+++.|-..+..++..+...++.++++..|.+|+.++++.++..+......+ .-..
T Consensus 385 ~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G 464 (716)
T KOG0058|consen 385 AVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQG 464 (716)
T ss_pred HHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccc
Confidence 345667889999999999999999999999999999999999999999999999999999998775433211111 2334
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce------------eecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i 186 (1128)
.|+|+||+|+||.+++.++|+|+||+|+|||.+|+|||||+||||++++|.++|+|++|.+. .+|++|
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~I 544 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKI 544 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHe
Confidence 79999999999999889999999999999999999999999999999999999999988642 367889
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
|+|.|+|.||++||+|||.+|.+ .++|++.++++.++.++++..+|+||+|.|||+|..|||||||||||||||++||.
T Consensus 545 g~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~ 624 (716)
T KOG0058|consen 545 GLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPR 624 (716)
T ss_pred eeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCC
Confidence 99999999999999999999965 57899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc-hHHHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG-ELFQKLMEN 344 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~ 344 (1128)
||||||+|||||++++..+-+ .+....+++|||+|+||++.+++||+|+++++|++++.|+|+|++++. +.|.+++..
T Consensus 625 VLILDEATSALDaeSE~lVq~-aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~ 703 (716)
T KOG0058|consen 625 VLILDEATSALDAESEYLVQE-ALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQR 703 (716)
T ss_pred EEEEechhhhcchhhHHHHHH-HHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHH
Confidence 999999999999999887755 555566789999999999999999999999999999999999999987 789888765
Q ss_pred h
Q 001189 345 A 345 (1128)
Q Consensus 345 ~ 345 (1128)
+
T Consensus 704 q 704 (716)
T KOG0058|consen 704 Q 704 (716)
T ss_pred h
Confidence 3
No 67
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=6.9e-57 Score=504.80 Aligned_cols=481 Identities=21% Similarity=0.277 Sum_probs=339.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHH
Q 001189 467 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 546 (1128)
Q Consensus 467 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~ 546 (1128)
.+.+...++..++++++...+.+....+...+|...+++|..--........+ +|++.+..++...-...+.....
T Consensus 71 ~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW 146 (580)
T COG4618 71 GLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW 146 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch
Confidence 33445667788899999999999999999999999887766543222222222 35555544433211111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHH
Q 001189 547 LLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 626 (1128)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~ 626 (1128)
.-..+.+++.+.+|..+..+.-.++++.+.++-....++--+...+....-..+...+.++..+|++.+......+++.+
T Consensus 147 ~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~ 226 (580)
T COG4618 147 MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGR 226 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHH
Confidence 12223334444555544433333332222222222222222222223333455677789999999999887766655544
Q ss_pred HHH----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH---HHHHHHHH
Q 001189 627 SMD----KNIRYTLVNMGANRWL-AIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN---ITSLLTAV 698 (1128)
Q Consensus 627 ~~~----~~~~~~~~~~~~~~wl-~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~~~ 698 (1128)
... .+.+............ .+++ .+...+..+++.+++ . +..+ .|.+++-... ...++...
T Consensus 227 ~~~~~L~~~~~asd~~~~~~~~Sr~~Rm-~lQs~iLg~GA~Lvi-~-ge~t--------~G~mIA~SIl~gRaLaPid~a 295 (580)
T COG4618 227 FNAAYLSAQERASDRNGAFGALSRALRM-ALQSAVLGLGAWLVI-K-GEIT--------PGMMIAGSILSGRALAPIDLA 295 (580)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhcceeeEE-c-CcCC--------cchhhHHHHHhhhhhccHHHH
Confidence 433 3333322222111111 1111 111222222222222 1 2221 1222222222 22355556
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEEC
Q 001189 699 LRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVG 778 (1128)
Q Consensus 699 ~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG 778 (1128)
+..|..+.....+..|+.+++...++...... .| ..+|.+.++++++.=++..+++|+|+||.+.+||-+||||
T Consensus 296 I~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~--LP----~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIG 369 (580)
T COG4618 296 IANWKQFVAARQSYKRLNELLAELPAAAERMP--LP----APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIG 369 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCCCC--CC----CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEEC
Confidence 77777888888999999999875443221111 11 1357899999999766666799999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHh
Q 001189 779 RTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERA 857 (1128)
Q Consensus 779 ~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~ 857 (1128)
|||||||||.++|.|.+.|.+|.|++||-|+.+++++++=++|||+|||-.||+|||+|||.-|. +.+++.+.++.+.+
T Consensus 370 PSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lA 449 (580)
T COG4618 370 PSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLA 449 (580)
T ss_pred CCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999997665 66778899999999
Q ss_pred cHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEee
Q 001189 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIA 936 (1128)
Q Consensus 858 ~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vt 936 (1128)
+.+|.|.++|+||||.+|++|..||||||||++||||++.+|.+++||||-|+||.+.|+.+.++|.+.+ +|+|+|+||
T Consensus 450 gvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvvia 529 (580)
T COG4618 450 GVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIA 529 (580)
T ss_pred ChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999998865 589999999
Q ss_pred cCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 937 HRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 937 H~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||.+.+..+|+|+||++|++..+|+.+|.+++
T Consensus 530 HRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 530 HRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999999999864
No 68
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-55 Score=554.47 Aligned_cols=494 Identities=20% Similarity=0.274 Sum_probs=372.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHH
Q 001189 461 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 540 (1128)
Q Consensus 461 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~ 540 (1128)
|....++..+...++.....+.....+.+.-..+-..+|+|.++.+-..-...+.|+++|-++.|++.+++........+
T Consensus 244 ~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w 323 (1381)
T KOG0054|consen 244 LAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLW 323 (1381)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 33333344444555544455556677888888889999999999999888888999999999999999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHH
Q 001189 541 MGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM 620 (1128)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~ 620 (1128)
...+..+++...+...+++..+..++ ++++++++..+..+..+..+......+......++|.++|+++||.|+||+.|
T Consensus 324 ~~Plqi~~~l~lLy~~LG~sa~~G~~-~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F 402 (1381)
T KOG0054|consen 324 SAPLQIILALYLLYGLLGPSALAGVA-VMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPF 402 (1381)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHH
Confidence 77766666666665555555444444 33334444444444444444444444444556789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 621 ADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAV-VQNGSAENQEAFASTMGLLLSYALNITSLLTAVL 699 (1128)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 699 (1128)
.++..+.-+...+..........+..+.......++.++.....+ ..++..+... +-..+++...+..++..++
T Consensus 403 ~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~-----aF~slalfniLr~pl~~~P 477 (1381)
T KOG0054|consen 403 LKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTAST-----AFTSLALFNILRFPLFMLP 477 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhH-----HHHHHHHHHHHHHHHHHHH
Confidence 887765555443333222222222222222222222222111112 2222333222 2233555555666666677
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEEC
Q 001189 700 RLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVG 778 (1128)
Q Consensus 700 ~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG 778 (1128)
......-+..++++|+.+++..++..+...+. .+.-+.+..|+++|.+|+++++ .++.|+||||+|++|+.+||||
T Consensus 478 ~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG 554 (1381)
T KOG0054|consen 478 SVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVG 554 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEEC
Confidence 77777777899999999999765543322211 1112334469999999999763 3459999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhc
Q 001189 779 RTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH 858 (1128)
Q Consensus 779 ~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~ 858 (1128)
+.|||||||+.+|+|.++..+|+|.++| .++||||.|++|+|||||||.|+.++++++..++++.|+
T Consensus 555 ~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~ 621 (1381)
T KOG0054|consen 555 PVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACA 621 (1381)
T ss_pred CCCCCHHHHHHHHhcCcccccceEEEcC-------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHcc
Confidence 9999999999999999999999999998 399999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHH-HHHHHHHcCCcEEEEeec
Q 001189 859 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSCTMLIIAH 937 (1128)
Q Consensus 859 l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i-~~~l~~~~~~~Tvi~vtH 937 (1128)
|.+.++.+|.|..|+|||+|.+||||||||++||||++++++|++||.|.|++|.++-+.| .++|+...+++|+|+|||
T Consensus 622 L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTH 701 (1381)
T KOG0054|consen 622 LKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTH 701 (1381)
T ss_pred CHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999876655 567777778999999999
Q ss_pred CchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 938 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 938 ~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
.++.+.+||.|++|++|+|.+.|+++||++. +..|.++.
T Consensus 702 ql~~L~~ad~Iivl~~G~I~~~Gty~el~~~-~~~~~~l~ 740 (1381)
T KOG0054|consen 702 QLQFLPHADQIIVLKDGKIVESGTYEELLKS-GGDFAELA 740 (1381)
T ss_pred chhhhhhCCEEEEecCCeEecccCHHHHHhc-chhHHHHh
Confidence 9999999999999999999999999999965 34566553
No 69
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4e-54 Score=574.91 Aligned_cols=527 Identities=18% Similarity=0.246 Sum_probs=365.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 001189 429 CYFLTETLRVSSSTWLSYWTDQSSLKTHG---PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRA 505 (1128)
Q Consensus 429 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~ 505 (1128)
+.++...+....|+.+....+........ ...+...++++.++..++.....+.....+.+....+...+|+|+++.
T Consensus 325 ~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l 404 (1522)
T TIGR00957 325 FKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVI 404 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444455555565555544322111111 111222233333333444333444556678888889999999999999
Q ss_pred CccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 506 PMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTARE 585 (1128)
Q Consensus 506 p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 585 (1128)
|..++++.+.|+++|+++.|++.+...... +..+....+.++..++++.....+..++.+.++++++++..+..+..+.
T Consensus 405 ~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~ 483 (1522)
T TIGR00957 405 TNSARKSSTVGEIVNLMSVDAQRFMDLATY-INMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKT 483 (1522)
T ss_pred ChhhcCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764432 3333333333333332222221112112112222222333333333333
Q ss_pred HHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001189 586 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL-TATFA 664 (1128)
Q Consensus 586 ~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~-~~~~~ 664 (1128)
.++.....+....+.+.|.++|+++||.|++++.+.+++.+..+...+..........+..+.......++.++ .+.+.
T Consensus 484 ~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 563 (1522)
T TIGR00957 484 YQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYV 563 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455668899999999999999999998887776655544433222222222111111111111111 11222
Q ss_pred HHh-cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC-CCc
Q 001189 665 VVQ-NGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP-SSG 742 (1128)
Q Consensus 665 v~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p-~~g 742 (1128)
+.. +...+....| ..+++...+..++..+......+.....+.+|+.++++.+++++...+.. ...+ ..+
T Consensus 564 ~~~~~~~l~~~~~f-----~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~---~~~~~~~~ 635 (1522)
T TIGR00957 564 TVDENNILDAEKAF-----VSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERR---TIKPGEGN 635 (1522)
T ss_pred HhcCCCCcCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccc---ccCCCCCC
Confidence 222 1222222112 22333344556777778888888899999999999997654432111100 0111 123
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 702 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVA 702 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEE
Confidence 6999999999975445799999999999999999999999999999999999999999999997 599
Q ss_pred EEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 823 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
||||+|++|++||+||+.++.+.++++..++++.|++.+.++.+|.|++|.+|++|.+||||||||++||||++++|+|+
T Consensus 703 yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il 782 (1522)
T TIGR00957 703 YVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782 (1522)
T ss_pred EEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999987666778888999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHH---HcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 903 VLDEATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~---~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
|||||||+||+.+++.+.+.+.+ ..+++|+|+|||+++.+..||+|++|++|++++.|++++++++. +.|..+..
T Consensus 783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~-~~~~~l~~ 860 (1522)
T TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRD-GAFAEFLR 860 (1522)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcc-hhHHHHHH
Confidence 99999999999999999998863 34689999999999999999999999999999999999998754 45666654
No 70
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.8e-57 Score=552.76 Aligned_cols=300 Identities=29% Similarity=0.499 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--CCCCCCCc
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGLPA 119 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~~~ 119 (1128)
++++|+|++.+.+|.+|.|.++++.++.+.+..|+..+.+.+..+++++.+.+|+.++++.|.+...+.. ..+.-...
T Consensus 392 v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~ 471 (709)
T COG2274 392 VLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGE 471 (709)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCce
Confidence 3568899999999999999999999999999999999999999999999999999999999876433221 12223357
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce------------eecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i~ 187 (1128)
|+++|++|+|+.+ ++++|+|+||+|++||++||||+||||||||+|+|+|+++|++|.+. .+|++||
T Consensus 472 I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig 550 (709)
T COG2274 472 IEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG 550 (709)
T ss_pred EEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence 9999999999864 35899999999999999999999999999999999999999988643 2677899
Q ss_pred EEecCCCCCcccHHHHHhcCCCC-CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
||+|++.+|++||+|||.++.+. +.|++.++++.++.++++..+|.|++|.+||+|.+||||||||++|||||+++|+|
T Consensus 551 ~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I 630 (709)
T COG2274 551 YVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI 630 (709)
T ss_pred EEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE
Confidence 99999999999999999999875 45899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
|||||||||||+++++.+.+++.+ ...|+|+|+||||++.++.||||++|++|+|+++|+++|+++.++.|.+++.
T Consensus 631 LlLDEaTSaLD~~sE~~I~~~L~~-~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~ 706 (709)
T COG2274 631 LLLDEATSALDPETEAIILQNLLQ-ILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQ 706 (709)
T ss_pred EEEeCcccccCHhHHHHHHHHHHH-HhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHh
Confidence 999999999999999999997644 5578999999999999999999999999999999999999999888887764
No 71
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=9e-56 Score=498.25 Aligned_cols=441 Identities=25% Similarity=0.413 Sum_probs=339.3
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecC
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 184 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 184 (1128)
+.++++++++.|+ +-.+++||||++++||++||+|+||+|||||+++|.|+|+|++|.+.. .+.
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 3589999999998 357999999999999999999999999999999999999999986533 233
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC------CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSAF------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
.||+|.|++.|+ +.||.|||.+|.+. +. +++.+..+..++.-+ | .+....||-|+|||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd----p-------~~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD----P-------DAKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC----c-------cceeecCCcchhHH
Confidence 599999999997 67999999999653 22 233333333333322 2 23446799999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHh
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
|.|-+|||++|++||||||||.|-|...+.+|+.+.+....|+|||+|||++.++.. |||+-||.+|+++..-+ ...
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~--~~~ 226 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD--PVA 226 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec--CCC
Confidence 999999999999999999999999999999999877667789999999999999775 89999999999763211 000
Q ss_pred hcchHHHHHHHHhchhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccccccccccchhhhhhhhhhhcccchHHHHHH
Q 001189 333 NNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSR 412 (1128)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 412 (1128)
+. + .++
T Consensus 227 -----------------------------------~~--------------t-----------~~e-------------- 232 (501)
T COG3845 227 -----------------------------------ET--------------T-----------EEE-------------- 232 (501)
T ss_pred -----------------------------------CC--------------C-----------HHH--------------
Confidence 00 0 000
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 413 YKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 492 (1128)
Q Consensus 413 y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1128)
T Consensus 233 -------------------------------------------------------------------------------- 232 (501)
T COG3845 233 -------------------------------------------------------------------------------- 232 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 493 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 572 (1128)
Q Consensus 493 ~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 572 (1128)
T Consensus 233 -------------------------------------------------------------------------------- 232 (501)
T COG3845 233 -------------------------------------------------------------------------------- 232 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 573 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 652 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~ 652 (1128)
+.++
T Consensus 233 -------------la~l--------------------------------------------------------------- 236 (501)
T COG3845 233 -------------LAEL--------------------------------------------------------------- 236 (501)
T ss_pred -------------HHHH---------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCC
Q 001189 653 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 732 (1128)
Q Consensus 653 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~ 732 (1128)
+.+.. ...+.+
T Consensus 237 -------------MvG~~------------------------------------------------v~~~~~-------- 247 (501)
T COG3845 237 -------------MVGRE------------------------------------------------VVLRVV-------- 247 (501)
T ss_pred -------------hcCCc------------------------------------------------cccccc--------
Confidence 00000 000000
Q ss_pred CCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec-CC
Q 001189 733 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-AK 811 (1128)
Q Consensus 733 ~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i-~~ 811 (1128)
.++.-|....++++|++..-+.. .+.+++|||+|++||++||.|-.|.|-+.|+.+|+|+.+|.+|+|.++|+|+ ..
T Consensus 248 -~~~~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~ 325 (501)
T COG3845 248 -KPPSTPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325 (501)
T ss_pred -cCCCCCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEecccc
Confidence 00111233458999999875433 3689999999999999999999999999999999999999999999999997 67
Q ss_pred CChHHhhh-ceEEEcCCCc----cccccHhhccccCCCC----------CHHHHHHHHHHhcHHHHHHHcc---CCcchh
Q 001189 812 FGLMDLRK-ILGIIPQSPV----LFSGTVRFNLDPFSEH----------SDADLWEALERAHLKDAIRRNS---LGLDAQ 873 (1128)
Q Consensus 812 ~~~~~~r~-~i~~v~Q~~~----lf~~Tv~~nl~~~~~~----------~~~~i~~~l~~~~l~~~i~~lp---~Gldt~ 873 (1128)
.++...|+ .++|||.|.. ..+.|+.||+.+.... ....+.+ ...+.++++. .+.++
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~-----~a~~li~~fdVr~~~~~~- 399 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK-----FARELIEEFDVRAPSPDA- 399 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHH-----HHHHHHHHcCccCCCCCc-
Confidence 78888776 4999999983 4466999998542211 1122221 2233444432 23333
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEE
Q 001189 874 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 951 (1128)
Q Consensus 874 v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl 951 (1128)
...+||||++||+-+||-|.++|++||..+||.|||..+.+.|++.|.+.. .|+.|++||-+++++.. ||||.||
T Consensus 400 ---~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi 476 (501)
T COG3845 400 ---PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVI 476 (501)
T ss_pred ---chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeee
Confidence 235799999999999999999999999999999999999999999998866 57899999999999988 9999999
Q ss_pred eCCEEEEecChhH
Q 001189 952 DSGRVLEYDTPEE 964 (1128)
Q Consensus 952 ~~G~i~~~g~~~~ 964 (1128)
.+|+++....+++
T Consensus 477 ~~Gri~~~~~~~~ 489 (501)
T COG3845 477 YEGRIVGIVPPEE 489 (501)
T ss_pred eCCceeccccccc
Confidence 9999998877665
No 72
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=6.7e-53 Score=523.19 Aligned_cols=509 Identities=16% Similarity=0.143 Sum_probs=360.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 423 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL-----FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 497 (1128)
Q Consensus 423 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 497 (1128)
+++.+++.++...+....+++.+...+.......... .+..+++++.+...+..++..++......+....+|++
T Consensus 98 l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~ 177 (659)
T TIGR00954 98 LILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSK 177 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556666667777666654321111101 11222223333444455555555666666777777888
Q ss_pred HHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 001189 498 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI-VSTMSLWAIMPLLLLFYAAY 576 (1128)
Q Consensus 498 l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~ 576 (1128)
.+++....++.||+. ++|++++|+++|++.+...+...+..++..++.++...+.+.. ..+...++++.++++.+.+.
T Consensus 178 ~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~ 256 (659)
T TIGR00954 178 YLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVL 256 (659)
T ss_pred HhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 888777788888886 7899999999999999888777777777666666655444443 44444343333334444444
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001189 577 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG--- 653 (1128)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~--- 653 (1128)
.++.+...+..+......+.+.+.+.|.++|+++|++|+.++...+++.+..+...+..........++.....++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 336 (659)
T TIGR00954 257 TKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYT 336 (659)
T ss_pred HHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55555555666666666778889999999999999999999888777777666665555554444444444444332
Q ss_pred -HHHHHHHHHH-HHHhc----CCcchhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 001189 654 -GLMIWLTATF-AVVQN----GSAENQEAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSE 724 (1128)
Q Consensus 654 -~~~~~~~~~~-~v~~~----~~~~~~~~~~~~~g~~l~~---~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e 724 (1128)
..+.+++... .+... +..+ ....++.++.+ +..+..++..+......+.....+.+|+.++++.+++
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~g~~t----~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~ 412 (659)
T TIGR00954 337 WSAVGLVAVSIPIFDKTHPAFLEMS----EEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDD 412 (659)
T ss_pred HHHHHHHHHHHHHHhcccccccccC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222212 22111 1111 11223323333 3445666777777788888899999999999865332
Q ss_pred Cc-------cccC--CC----C-----C--CCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCH
Q 001189 725 AP-------LVIE--SN----R-----P--PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGK 784 (1128)
Q Consensus 725 ~~-------~~~~--~~----~-----~--~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGK 784 (1128)
.. ...+ .. . + .......+.|+++||+++|+++ +++|+|+||+|++||++||+|||||||
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGK 491 (659)
T TIGR00954 413 VKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGK 491 (659)
T ss_pred HhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCH
Confidence 11 0000 00 0 0 0000123569999999999643 369999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccC--------CCCCHHHHHHHHHH
Q 001189 785 SSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF--------SEHSDADLWEALER 856 (1128)
Q Consensus 785 STll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~--------~~~~~~~i~~~l~~ 856 (1128)
|||+++|+|+++|++|+|.+++ |++++||||+|.+|++|+++|+.+. ...++++++++++.
T Consensus 492 STLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~ 560 (659)
T TIGR00954 492 SSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDN 560 (659)
T ss_pred HHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHH
Confidence 9999999999999999998863 5689999999999999999999753 22467889999999
Q ss_pred hcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEee
Q 001189 857 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 936 (1128)
Q Consensus 857 ~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vt 936 (1128)
+++.+++++ |.|+||..+. +.+||||||||++||||++++|++|||||||++||+++++.+++.+++ .++|+|+||
T Consensus 561 ~~l~~~~~~-~~g~~~~~~~-~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--~~~tvI~is 636 (659)
T TIGR00954 561 VQLTHILER-EGGWSAVQDW-MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVS 636 (659)
T ss_pred cCCHHHHhh-cCCccccccc-ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH--cCCEEEEEe
Confidence 999999987 8999999874 568999999999999999999999999999999999999999999987 489999999
Q ss_pred cCchhhhhcCEEEEEe
Q 001189 937 HRLNTIIDCDRILLLD 952 (1128)
Q Consensus 937 H~l~~~~~~D~i~vl~ 952 (1128)
||++++..||+|++|+
T Consensus 637 H~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 637 HRKSLWKYHEYLLYMD 652 (659)
T ss_pred CchHHHHhCCEEEEEe
Confidence 9999998899999997
No 73
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-55 Score=502.51 Aligned_cols=305 Identities=29% Similarity=0.459 Sum_probs=266.3
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC-C
Q 001189 36 NSIPVLVTVVSFGMFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPP-L 113 (1128)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~-~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~-~ 113 (1128)
..+.+.++.+.+|.. +.+ |+++....+.++.+...++.|++.+...+|...++..+.+.+..|++.|......... .
T Consensus 234 a~lsiAlvAv~~g~~-ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~ 312 (559)
T COG4988 234 AYLSIALVAVYIGFR-LLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAE 312 (559)
T ss_pred HHHHHHHHHHHHHHH-HHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccc
Confidence 333444444555544 455 7999999999999999999999999999999999999999999999987653322211 1
Q ss_pred CCCCCc--EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce-----------
Q 001189 114 TSGLPA--ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA----------- 180 (1128)
Q Consensus 114 ~~~~~~--i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~----------- 180 (1128)
....+. ++.+|++|.|+++ +++++|+||++++|++++|||+||||||||+++|+|+++|++|...
T Consensus 313 ~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~ 390 (559)
T COG4988 313 VANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP 390 (559)
T ss_pred cccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCH
Confidence 112223 4555999999853 4899999999999999999999999999999999999999987543
Q ss_pred -eecCcEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 181 -VIRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 181 -~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
.|+++++||||+|.+|++||||||.++++ .+++++.++++.+++.++++. |+|.+|.+||+|.+|||||+|||+|||
T Consensus 391 ~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 391 EAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALAR 469 (559)
T ss_pred HHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHH
Confidence 25678999999999999999999999987 678999999999999999999 999999999999999999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHH
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 338 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 338 (1128)
||+++++++||||||||||.++++.|.+.+.+ ..+++|+|+||||++.+..+|+|++|++|+++++|+|+++.++++.|
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~-l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y 548 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQE-LAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLY 548 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHH-HHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHH
Confidence 99999999999999999999999999876544 45679999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 001189 339 QKLMENA 345 (1128)
Q Consensus 339 ~~~~~~~ 345 (1128)
++++..+
T Consensus 549 ~~l~~~q 555 (559)
T COG4988 549 ANLLKQQ 555 (559)
T ss_pred HHHHHHH
Confidence 9998653
No 74
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.1e-52 Score=551.01 Aligned_cols=482 Identities=18% Similarity=0.262 Sum_probs=344.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHH
Q 001189 466 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVS 545 (1128)
Q Consensus 466 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~ 545 (1128)
+++.++..++.....|.....+.+.-..+...+|+|+++.+...+++.++|+++|++++|++.+...+......+...+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~ 208 (1490)
T TIGR01271 129 CLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQ 208 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555566666777777788888899999999999999999999999999999998866554433333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHH
Q 001189 546 QLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 625 (1128)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~ 625 (1128)
.+++.+++...+.+..++.++ ++++++++..+..+.....++..............|.++|+++||.|++++.+.++..
T Consensus 209 i~~~~~lL~~~~G~~~l~~l~-v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~ 287 (1490)
T TIGR01271 209 VILLMGLIWELLEVNGFCGLG-FLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIK 287 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHH
Confidence 333333332233333222222 2223333333333334444444444555667788999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001189 626 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI-WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLL-TAVLRLAS 703 (1128)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~ 703 (1128)
+..+...+..........+..........++. ...+.+.+.. + ......|+ .++++..+..++ ..+.....
T Consensus 288 ~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~-~-~~~~~~ft-----~lal~~lL~~~l~~~lp~~~~ 360 (1490)
T TIGR01271 288 NIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIK-G-IILRRIFT-----TISYCIVLRMTVTRQFPGAIQ 360 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CcHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 66665554433332222222221111111111 1111222221 1 11111121 123333333333 35666667
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC---------------------------
Q 001189 704 LAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE--------------------------- 756 (1128)
Q Consensus 704 ~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~--------------------------- 756 (1128)
.+.....+++|+.+++..++..+.. .. +....|+++|++|.|+..
T Consensus 361 ~~~~a~~s~~RI~~fL~~~e~~~~~--~~------~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1490)
T TIGR01271 361 TWYDSLGAITKIQDFLCKEEYKTLE--YN------LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFS 432 (1490)
T ss_pred HHHHHHHHHHHHHHHhcCccccccc--cc------CCCCceEEecceEecCCcccccccccccccccccccccccccccc
Confidence 7778899999999999765432110 00 112347888888887421
Q ss_pred -----CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccc
Q 001189 757 -----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 831 (1128)
Q Consensus 757 -----~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 831 (1128)
.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||||+|++|
T Consensus 433 ~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~ 499 (1490)
T TIGR01271 433 NFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIM 499 (1490)
T ss_pred ccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccC
Confidence 13589999999999999999999999999999999999999999999997 499999999999
Q ss_pred cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCC
Q 001189 832 SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 911 (1128)
Q Consensus 832 ~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~l 911 (1128)
++||+|||.+....++++..++++.|++.+.++.+|.|.+|.+|++|.+||||||||++||||++++|+|+|||||||+|
T Consensus 500 ~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saL 579 (1490)
T TIGR01271 500 PGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHL 579 (1490)
T ss_pred CccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 99999999876556666788889999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHH-HHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 912 DVRTDALIQK-TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 912 D~~t~~~i~~-~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
|+.+.+.|.+ ++....+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.. ..|....
T Consensus 580 D~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~-~~~~~~~ 645 (1490)
T TIGR01271 580 DVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKR-PDFSSLL 645 (1490)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcC-hHHHHHH
Confidence 9999999997 467766799999999999999899999999999999999999998753 3344433
No 75
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.6e-54 Score=541.30 Aligned_cols=297 Identities=25% Similarity=0.353 Sum_probs=266.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
+++++|++.+..|.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.+++..............|++
T Consensus 375 ~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~ 454 (686)
T TIGR03797 375 ALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEV 454 (686)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEE
Confidence 34567888888999999999999999999999999999999999999999999999998765422111111111236999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce------------eecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i~~v~ 190 (1128)
+|++|+|++. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|.+. .+|+.|||||
T Consensus 455 ~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 455 DRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred EEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 9999999743 46899999999999999999999999999999999999999988542 1456799999
Q ss_pred cCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 001189 191 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLD 270 (1128)
|+|++|++||+|||.++++.+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+|||||+++|+|||||
T Consensus 534 Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD 613 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613 (686)
T ss_pred cCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 271 Epts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
||||+||+++++.+++.+.+. ++|+|+||||++.++.||+|++|++|+++++|++++++++++.|.+++.
T Consensus 614 EpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~ 683 (686)
T TIGR03797 614 EATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR 683 (686)
T ss_pred CCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 999999999999999876543 5899999999999999999999999999999999999988888888764
No 76
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.9e-54 Score=531.90 Aligned_cols=280 Identities=28% Similarity=0.414 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC-CCC-CCCCcEEEEeEEEEeCCCCCCCce
Q 001189 61 RAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-PLT-SGLPAISIRNGYFSWDSKAERPTL 138 (1128)
Q Consensus 61 ~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~-~~~-~~~~~i~~~~~~f~~~~~~~~~~L 138 (1128)
.+++++.+...+..|+..++..+..+.+++++++||.++++.+++...... +.+ .....|+++|++|.|++ ++++|
T Consensus 289 ~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL 366 (588)
T PRK11174 289 AGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLA 366 (588)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeee
Confidence 445555677888899999999999999999999999999987653211111 111 12235999999987763 36799
Q ss_pred eeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEecCCCCCcccHHHHHhc
Q 001189 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILF 206 (1128)
Q Consensus 139 ~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~ 206 (1128)
+|+||++++|+++||||+||||||||+++|+|++ |++|.+.. +|+.|+||||+|++|++||+|||.+
T Consensus 367 ~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~ 445 (588)
T PRK11174 367 GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLL 445 (588)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhc
Confidence 9999999999999999999999999999999999 88775421 3557999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHH
Q 001189 207 GSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 285 (1128)
Q Consensus 207 g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~ 285 (1128)
|++ .+++++.++++.|+++++++.+|+|++|.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.+.
T Consensus 446 g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~ 525 (588)
T PRK11174 446 GNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525 (588)
T ss_pred CCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 964 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 286 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 286 ~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
+.+ ....+++|+|+||||++.++.||+|++|++|+++++|+|++++++++.|++++..
T Consensus 526 ~~l-~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~ 583 (588)
T PRK11174 526 QAL-NAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH 583 (588)
T ss_pred HHH-HHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHH
Confidence 855 4445789999999999999999999999999999999999999998899888754
No 77
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.6e-53 Score=537.93 Aligned_cols=296 Identities=28% Similarity=0.427 Sum_probs=265.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC------CCC--C
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN------PPL--T 114 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~------~~~--~ 114 (1128)
+++++|++.+..|.+|+|.++++..++..+..|+..++..+..+.+++.+++|+.++++.+++..... ... .
T Consensus 393 ~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~ 472 (710)
T TIGR03796 393 LILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSP 472 (710)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCC
Confidence 45677889899999999999999999999999999999999999999999999999998765432111 000 1
Q ss_pred CCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------e
Q 001189 115 SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------I 182 (1128)
Q Consensus 115 ~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~ 182 (1128)
.....|+++|++|+|++. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. +
T Consensus 473 ~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 473 RLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred CCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence 112369999999999843 468999999999999999999999999999999999999999886432 4
Q ss_pred cCcEEEEecCCCCCcccHHHHHhcCC-CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 183 RGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~~~Tv~eni~~g~-~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
|+.|+||||+|++|++||+|||.++. +.+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+|||||+
T Consensus 552 r~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred HhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999885 47889999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHH
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 341 (1128)
++|+|||||||||+||+++++.+++.+.+ .++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|+++
T Consensus 632 ~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l 708 (710)
T TIGR03796 632 RNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARL 708 (710)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHH
Confidence 99999999999999999999999987654 479999999999999999999999999999999999999888888776
Q ss_pred H
Q 001189 342 M 342 (1128)
Q Consensus 342 ~ 342 (1128)
+
T Consensus 709 ~ 709 (710)
T TIGR03796 709 I 709 (710)
T ss_pred h
Confidence 4
No 78
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.7e-53 Score=531.97 Aligned_cols=297 Identities=25% Similarity=0.396 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCC-CCCCcE
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLT-SGLPAI 120 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~-~~~~~i 120 (1128)
+.++.+|.+.+..|.+|++.+++++.++..+..|+..++..+..+.++..+.+|+.++++.+++...+....+ +....|
T Consensus 400 ~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I 479 (711)
T TIGR00958 400 VLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLI 479 (711)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeE
Confidence 3445678888889999999999999999999999999999999999999999999999987654221111111 123469
Q ss_pred EEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEE
Q 001189 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 188 (1128)
Q Consensus 121 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 188 (1128)
+++|++|+|++.+++++|+|+||+|++||+++||||||||||||+++|+|+++|++|.+.. ++++|+|
T Consensus 480 ~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 559 (711)
T TIGR00958 480 EFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVAL 559 (711)
T ss_pred EEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceE
Confidence 9999999998654578999999999999999999999999999999999999999875432 3567999
Q ss_pred EecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 001189 189 VPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267 (1128)
Q Consensus 189 v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~il 267 (1128)
|||+|++|++||+|||.+|.+ .+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+||||++++|+|+
T Consensus 560 v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~IL 639 (711)
T TIGR00958 560 VGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVL 639 (711)
T ss_pred EecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999954 6788999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHH
Q 001189 268 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341 (1128)
Q Consensus 268 lLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 341 (1128)
|||||||+||+++++.+++ .. ..+++|+|+||||++.++.||+|++|++|+|+++|+|++++++++.|+++
T Consensus 640 ILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 640 ILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred EEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 9999999999999999987 22 33689999999999999999999999999999999999999887777654
No 79
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=5.1e-53 Score=520.08 Aligned_cols=300 Identities=32% Similarity=0.526 Sum_probs=269.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
.+++++.+.+..+.+++|.+.+++.++..+..|+..+...+..+..+..+.+|+.++++.++....+..+.......|++
T Consensus 252 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f 331 (567)
T COG1132 252 LVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEF 331 (567)
T ss_pred HHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEE
Confidence 34566777788899999999999999999999999999999999999999999999999865422221111122345999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++|.+.. +|++|+|||
T Consensus 332 ~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~ 409 (567)
T COG1132 332 ENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVS 409 (567)
T ss_pred EEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEc
Confidence 999999984 468999999999999999999999999999999999999998876543 456799999
Q ss_pred cCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 001189 191 QVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 269 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illL 269 (1128)
|+|+||++||+|||.+|++ .+++++.++++.+++++++..+|+|++|.+||+|.+||||||||++||||++++|+||+|
T Consensus 410 Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILIL 489 (567)
T COG1132 410 QDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILIL 489 (567)
T ss_pred ccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999987 688999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHh
Q 001189 270 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345 (1128)
Q Consensus 270 DEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 345 (1128)
|||||+||+++++.+.+.+.. ..++||+|+|+||++.+..||+|++|++|+|++.|+|++|+++++.|++++..+
T Consensus 490 DEaTSalD~~tE~~I~~~l~~-l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~ 564 (567)
T COG1132 490 DEATSALDTETEALIQDALKK-LLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564 (567)
T ss_pred eccccccCHHhHHHHHHHHHH-HhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 999999999999999987653 336789999999999999999999999999999999999999999999998653
No 80
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1e-52 Score=519.85 Aligned_cols=300 Identities=27% Similarity=0.384 Sum_probs=265.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
.++++|.+.+..|.++++.+++++.++..+..|+..+...+..+..++.+++|+.++++.+++.........+....|++
T Consensus 265 ~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~ 344 (582)
T PRK11176 265 FVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEF 344 (582)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEE
Confidence 34566778888899999999999999999999999999999999999999999999998664322111111112235999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|++. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. +++.|+|||
T Consensus 345 ~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 423 (582)
T PRK11176 345 RNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVS 423 (582)
T ss_pred EEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEc
Confidence 9999999743 468999999999999999999999999999999999999999875422 356799999
Q ss_pred cCCCCCcccHHHHHhcCCC--CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 191 QVSWIFNATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
|+|++|++||+|||.+|.+ +++++++++++.++++++++.+|+|++|.+|++|.+|||||||||+|||||+++|+|+|
T Consensus 424 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ili 503 (582)
T PRK11176 424 QNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_pred cCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999853 68899999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
||||||+||+++++.+++.+.+ ..+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|++++..
T Consensus 504 lDEptsaLD~~t~~~i~~~l~~-~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~ 578 (582)
T PRK11176 504 LDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKM 578 (582)
T ss_pred EECccccCCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHH
Confidence 9999999999999999987654 34679999999999999999999999999999999999999998889888753
No 81
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.9e-50 Score=534.95 Aligned_cols=488 Identities=18% Similarity=0.237 Sum_probs=347.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc--cCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHH
Q 001189 469 SFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 546 (1128)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~ 546 (1128)
.++..++...+.+.....+.+.-..+...+|+|+++.+...+. +.+.|+++|.++.|++.+...+......+...+..
T Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~l 374 (1560)
T PTZ00243 295 QLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVL 374 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555666777777888889999999999888776 56899999999999999998875555444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHH
Q 001189 547 LLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 626 (1128)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~ 626 (1128)
+++.+++...+.+..++.+ .++++++++..+..+.....++.....+....+...|.++|+++||.+++|+.+.++..+
T Consensus 375 i~~~~lL~~~lG~~al~gv-~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~ 453 (1560)
T PTZ00243 375 LLSILLLSRLVGWCALMAV-AVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIED 453 (1560)
T ss_pred HHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433444333333 233333344444444333344433444555667889999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 627 SMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL-TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA 705 (1128)
Q Consensus 627 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 705 (1128)
.-+...+..........+..+.......++..+ ++.+.+. ++..+... +-..++++..+..++..+...+..+
T Consensus 454 ~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~-g~~Lt~~~-----vft~laL~~~L~~Pl~~lp~~~~~~ 527 (1560)
T PTZ00243 454 KRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLL-GHELTPEV-----VFPTIALLGVLRMPFFMIPWVFTTV 527 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555443333333333333222222222211 1122222 33333222 2233444555566677777777888
Q ss_pred HHHHHHHHHHHhhhcCCCCCcc----c-c---------C--C-----CC-------C-----------------------
Q 001189 706 ENSLNAVERVGNYIELPSEAPL----V-I---------E--S-----NR-------P----------------------- 734 (1128)
Q Consensus 706 e~~~~a~~Ri~~~~~~~~e~~~----~-~---------~--~-----~~-------~----------------------- 734 (1128)
....+++.|+.++++.++..+. . . . . .. +
T Consensus 528 ~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (1560)
T PTZ00243 528 LQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCC 607 (1560)
T ss_pred HHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccc
Confidence 8899999999999976541100 0 0 0 0 00 0
Q ss_pred ----CCCCCCCccEEEEEEEEEeC--------------------------------------CCCCCceeeeeEEEcCCc
Q 001189 735 ----PPGWPSSGSIKFEDVVLRYR--------------------------------------PELPPVLHGLSFTIPPSD 772 (1128)
Q Consensus 735 ----~~~~p~~g~i~~~~v~~~y~--------------------------------------~~~~~~l~~vsl~i~~Ge 772 (1128)
+..+...+.+.++|+++.++ .+.+++|+|+||+|++||
T Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~ 687 (1560)
T PTZ00243 608 EQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGK 687 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCC
Confidence 00011123467777766532 112358999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHH
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 852 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~ 852 (1128)
+++|+||||||||||+++|+|+++|++|+|.++ ++|+|+||+|++|++||+||+.++.....+++.+
T Consensus 688 ~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~ 754 (1560)
T PTZ00243 688 LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLAD 754 (1560)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHH
Confidence 999999999999999999999999999999863 4799999999999999999999876655667888
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHH-HHHHHcCCcE
Q 001189 853 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK-TIREEFKSCT 931 (1128)
Q Consensus 853 ~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~-~l~~~~~~~T 931 (1128)
+++.+++.+.++.+|.|++|.++++|.+||||||||++||||++.+|+||||||||++||+.+.+.+.+ ++....+++|
T Consensus 755 ~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~T 834 (1560)
T PTZ00243 755 AVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKT 834 (1560)
T ss_pred HHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999998777765 4444557899
Q ss_pred EEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 932 MLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 932 vi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
+|+|||+++.+..||+|++|++|++++.|+++++++. +.|..+..
T Consensus 835 vIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~--~~~~~~~~ 879 (1560)
T PTZ00243 835 RVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT--SLYATLAA 879 (1560)
T ss_pred EEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC--hHHHHHHH
Confidence 9999999999988999999999999999999999864 34555543
No 82
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=7.5e-53 Score=531.19 Aligned_cols=298 Identities=28% Similarity=0.480 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--CCCCCCCCc
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN--PPLTSGLPA 119 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~--~~~~~~~~~ 119 (1128)
++++++|++.+..|.+|+|.++++..++..+..|+..+...+..+.+++++++|+.++++.+++..... .+.......
T Consensus 394 i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~ 473 (708)
T TIGR01193 394 VVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGD 473 (708)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCc
Confidence 345678899999999999999999999999999999999999999999999999999998765432111 111122246
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
|+++|++|+|+. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. +|+.||
T Consensus 474 I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 474 IVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred EEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence 999999999973 368999999999999999999999999999999999999999875432 456799
Q ss_pred EEecCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 188 YVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
||||+|++|++||+|||.++. ..+++++.++++.++++++++.+|+|++|.+|++|.+|||||||||+|||||+++|+
T Consensus 552 ~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~ 631 (708)
T TIGR01193 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSK 631 (708)
T ss_pred EEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999983 467889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
|||||||||+||+++++.+++.+.. .+++|+|+||||++.+..||+|++|++|++++.|+|+++++..+.|+.+++
T Consensus 632 iliLDE~Ts~LD~~te~~i~~~L~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 632 VLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 9999999999999999999987754 368999999999999999999999999999999999999988888877653
No 83
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-53 Score=476.46 Aligned_cols=297 Identities=30% Similarity=0.482 Sum_probs=258.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEE
Q 001189 44 VVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIR 123 (1128)
Q Consensus 44 ~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~ 123 (1128)
++..+..-+..+.+|.+......+++.++..|+..|...+..+.++..-+.-+.......+.......+.......|+|+
T Consensus 276 im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I~F~ 355 (591)
T KOG0057|consen 276 IMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEFD 355 (591)
T ss_pred HHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCcccCCCcEEEE
Confidence 34445555678899999999999999999999999999999998888877766554433322111111222223469999
Q ss_pred eEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEec
Q 001189 124 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQ 191 (1128)
Q Consensus 124 ~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q 191 (1128)
||+|+|++ ++++|+++||+|++|+++||||+|||||||++++|+++++ ++|.+.. +|+.||||||
T Consensus 356 dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQ 432 (591)
T KOG0057|consen 356 DVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQ 432 (591)
T ss_pred eeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCC
Confidence 99999974 4679999999999999999999999999999999999999 7776432 5677999999
Q ss_pred CCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 001189 192 VSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270 (1128)
Q Consensus 192 ~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLD 270 (1128)
+..|||.||.+||.+|++ ..++++.++++.+++++.+..+|+||+|.+||+|..|||||||||+||||+++||+|+++|
T Consensus 433 d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 433 DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD 512 (591)
T ss_pred cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence 999999999999999976 4678999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 271 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 271 Epts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
||||+||.++++.+++.+.. ...+||+|+|.||++.++.+|+|+++++|++.+.|+|+|++...+.|..++..
T Consensus 513 EaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 513 EATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred CcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 99999999999999997655 56799999999999999999999999999999999999999988888887753
No 84
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.6e-52 Score=525.17 Aligned_cols=290 Identities=30% Similarity=0.481 Sum_probs=259.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC-C-CCCCCCcE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-P-LTSGLPAI 120 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~-~-~~~~~~~i 120 (1128)
.++++|++.+..|.+|+|.+++++.++..+..|+..++..+..+..++++++|+.++++.+++...... . .......|
T Consensus 385 ~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I 464 (694)
T TIGR03375 385 AIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEI 464 (694)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceE
Confidence 356778898999999999999999999999999999999999999999999999999987654221111 1 11122469
Q ss_pred EEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEE
Q 001189 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 188 (1128)
Q Consensus 121 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 188 (1128)
+++|++|+|++ .++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. +|+.|+|
T Consensus 465 ~~~~vsf~Y~~-~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~ 543 (694)
T TIGR03375 465 EFRNVSFAYPG-QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGY 543 (694)
T ss_pred EEEEEEEEeCC-CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEE
Confidence 99999999974 3468999999999999999999999999999999999999999885432 4568999
Q ss_pred EecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 001189 189 VPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267 (1128)
Q Consensus 189 v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~il 267 (1128)
|||+|++|++||+|||.++++ .+++++.++++.+++.++++.+|+|++|.+||+|.+||||||||++|||||+++|+++
T Consensus 544 v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~il 623 (694)
T TIGR03375 544 VPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPIL 623 (694)
T ss_pred ECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999976 7899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 268 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 268 lLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||||||+||+++++.+.+.+.+ ..+++|+|+||||++.++.||+|++|++|+++++|+|+++++.
T Consensus 624 iLDE~Ts~LD~~te~~i~~~l~~-~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 624 LLDEPTSAMDNRSEERFKDRLKR-WLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHH-HhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999986543 4468999999999999999999999999999999999998754
No 85
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.2e-52 Score=514.81 Aligned_cols=290 Identities=25% Similarity=0.358 Sum_probs=260.4
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCC
Q 001189 52 LLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDS 131 (1128)
Q Consensus 52 ~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~ 131 (1128)
+..|.++++.+++++.++..+..|+..++..+..+.++..+++||.++++.+++..... ........|+++|++|+|+.
T Consensus 274 ~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-~~~~~~~~i~~~~v~f~y~~ 352 (592)
T PRK10790 274 SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND-DRPLQSGRIDIDNVSFAYRD 352 (592)
T ss_pred HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC-ccCCCCCeEEEEEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999997654321111 11112245999999999974
Q ss_pred CCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce------------eecCcEEEEecCCCCCccc
Q 001189 132 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNAT 199 (1128)
Q Consensus 132 ~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~T 199 (1128)
++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+. .+++.|+||||+|++|++|
T Consensus 353 --~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~T 430 (592)
T PRK10790 353 --DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADT 430 (592)
T ss_pred --CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccch
Confidence 35799999999999999999999999999999999999999987542 2356799999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHH
Q 001189 200 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 279 (1128)
Q Consensus 200 v~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~ 279 (1128)
|+|||.++.+.+++++.++++.++++++++.+|+|++|.+|++|.+|||||||||+|||||+++|+|+|||||||+||++
T Consensus 431 i~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~ 510 (592)
T PRK10790 431 FLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510 (592)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHh
Q 001189 280 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345 (1128)
Q Consensus 280 ~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 345 (1128)
+++.+.+.+.. ..+++|+|+||||++.++.||+|++|++|++++.|+|++++++++.|+++...+
T Consensus 511 t~~~i~~~l~~-~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~ 575 (592)
T PRK10790 511 TEQAIQQALAA-VREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQ 575 (592)
T ss_pred HHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHH
Confidence 99999886643 445799999999999999999999999999999999999999999999887643
No 86
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.2e-51 Score=507.17 Aligned_cols=299 Identities=29% Similarity=0.435 Sum_probs=265.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
.++++|++.+..|.+|++.+++++.++..+..|+..+...+..+.+++++++|+.++++.+++......+..+....+++
T Consensus 254 ~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 333 (571)
T TIGR02203 254 VVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEF 333 (571)
T ss_pred HHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEE
Confidence 44567888888999999999999999999999999999999999999999999999998765422111111112236999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|++. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +++.|+|||
T Consensus 334 ~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 412 (571)
T TIGR02203 334 RNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412 (571)
T ss_pred EEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEc
Confidence 9999999753 468999999999999999999999999999999999999999876432 345799999
Q ss_pred cCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 191 QVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
|+|++|++|++|||.++. +.+++++.++++.|++++++..+|+|++|.+|++|.+|||||||||+||||++++|+|++
T Consensus 413 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ill 492 (571)
T TIGR02203 413 QDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILI 492 (571)
T ss_pred cCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999985 478899999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.||+|++|++|++++.|++++++++++.|+++..
T Consensus 493 LDEpts~LD~~~~~~i~~~L~~-~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 566 (571)
T TIGR02203 493 LDEATSALDNESERLVQAALER-LMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHN 566 (571)
T ss_pred EeCccccCCHHHHHHHHHHHHH-HhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHH
Confidence 9999999999999999887654 4568999999999999999999999999999999999999988778877654
No 87
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.5e-50 Score=497.47 Aligned_cols=296 Identities=24% Similarity=0.415 Sum_probs=256.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CCCCCCCCCcEE
Q 001189 44 VVSFGMFTLLGGDLTPARAFTSLSLFAVL-RFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NPPLTSGLPAIS 121 (1128)
Q Consensus 44 ~~~~~~~~~~~~~lt~~~~f~~l~l~~~l-~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~-~~~~~~~~~~i~ 121 (1128)
++++|++. ..|.++++.+++++.+...+ ..|+..++..+..+.++..+++||.++++.+++...+ ........+.|+
T Consensus 262 i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~ 340 (574)
T PRK11160 262 MLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLT 340 (574)
T ss_pred HHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEE
Confidence 45566666 47889999988887776554 4588888999999999999999999999876532211 111111234699
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEE
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 189 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 189 (1128)
++|++|+|+++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. +|+.|+||
T Consensus 341 ~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 419 (574)
T PRK11160 341 LNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVV 419 (574)
T ss_pred EEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEE
Confidence 99999999743 357999999999999999999999999999999999999999885432 35679999
Q ss_pred ecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 190 PQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 190 ~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
||+|++|++||+|||.++.+ .+++++.++++.++++++++. |+|++|.+||+|.+||||||||++|||||+++|+++|
T Consensus 420 ~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ili 498 (574)
T PRK11160 420 SQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLL 498 (574)
T ss_pred cccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999864 678899999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
||||||+||+++++.+.+.+.. ..+++|+|+||||++.++.||+|++|++|++++.|+|++++++++.|+++++
T Consensus 499 lDE~ts~lD~~t~~~i~~~l~~-~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 499 LDEPTEGLDAETERQILELLAE-HAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred EeCCcccCCHHHHHHHHHHHHH-HcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 9999999999999999886544 4468999999999999999999999999999999999999999999988764
No 88
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-52 Score=460.35 Aligned_cols=296 Identities=25% Similarity=0.455 Sum_probs=266.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCC-CCCCCCCCcEEEEe
Q 001189 47 FGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL-LPN-PPLTSGLPAISIRN 124 (1128)
Q Consensus 47 ~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~-~~~-~~~~~~~~~i~~~~ 124 (1128)
+.+|.+..+.+|+|....+..++-++.+|++.+...+..++.+.+-++++.++++++++.. .|+ +|.......|+|+|
T Consensus 463 l~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsn 542 (790)
T KOG0056|consen 463 LCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSN 542 (790)
T ss_pred eeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEE
Confidence 4456677899999999999999999999999999999999999999999999998776532 222 23333345799999
Q ss_pred EEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEecC
Q 001189 125 GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQV 192 (1128)
Q Consensus 125 ~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~ 192 (1128)
|+|.|++ ++|+|+||||++++|+.+|+|||||+||||++++|.++++..+|.+.. +|++||.||||
T Consensus 543 vtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQD 620 (790)
T KOG0056|consen 543 VTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQD 620 (790)
T ss_pred eEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCc
Confidence 9999974 589999999999999999999999999999999999999998876432 56789999999
Q ss_pred CCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 001189 193 SWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 271 (1128)
Q Consensus 193 ~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDE 271 (1128)
..|||.||..||.++++ ...|++.++++++++++.+-.+|+|+.|.|||+|-.||||+|||||+||+++++|.+++|||
T Consensus 621 tvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDE 700 (790)
T KOG0056|consen 621 TVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDE 700 (790)
T ss_pred ceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcc
Confidence 99999999999999976 45688889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc-chHHHHHHHHh
Q 001189 272 PLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLMENA 345 (1128)
Q Consensus 272 pts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 345 (1128)
+|||||..+++.|-. ++.....++|.|+|.||++.+-+||.|+++++|+|+|.|+|+|+..+ ++.|.+|+..+
T Consensus 701 ATSALDT~tER~IQa-aL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 701 ATSALDTNTERAIQA-ALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred hhhhcCCccHHHHHH-HHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 999999999999965 55656689999999999999999999999999999999999999887 78899998643
No 89
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-51 Score=466.34 Aligned_cols=286 Identities=29% Similarity=0.507 Sum_probs=242.8
Q ss_pred cCCCC-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCC
Q 001189 54 GGDLT-PARAFTSLSLFAVLRFPLFML-PNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDS 131 (1128)
Q Consensus 54 ~~~lt-~~~~f~~l~l~~~l~~pl~~l-~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~ 131 (1128)
.|..+ +..+...+..|..+- ++..+ |.++....+...|.+|+.++++.+++...+.+..+.....++++|++|+|++
T Consensus 270 ~G~~~~~~aa~~ll~~f~~~e-af~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~ 348 (573)
T COG4987 270 AGALAQPGAALALLVIFAALE-AFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPG 348 (573)
T ss_pred CCCcchhHHHHHHHHHHHHHH-HHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCC
Confidence 45555 333333333344332 33333 3777889999999999999998877544332212222227999999999985
Q ss_pred CCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEecCCCCCccc
Q 001189 132 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNAT 199 (1128)
Q Consensus 132 ~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~T 199 (1128)
+ ..++|+|+||++++||++||+|+||||||||+++|.|-++|++|.+.. ++..+++++|.+++|++|
T Consensus 349 ~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~T 427 (573)
T COG4987 349 Q-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGT 427 (573)
T ss_pred C-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHH
Confidence 4 468999999999999999999999999999999999999999886432 344799999999999999
Q ss_pred HHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCH
Q 001189 200 VRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278 (1128)
Q Consensus 200 v~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~ 278 (1128)
+|||+.++++ .++|++.++++.++|++.+...|+|++|.+||+|.+||||||||++|||+|++|++++||||||.+||+
T Consensus 428 lr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~ 507 (573)
T COG4987 428 LRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDP 507 (573)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCCh
Confidence 9999999975 478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHH
Q 001189 279 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 342 (1128)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 342 (1128)
.|++++.+.+.. ..+|||+|+||||+..++.+|+|++|++|+++++|+|++++.+++.|.++.
T Consensus 508 ~TE~~vL~ll~~-~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~ 570 (573)
T COG4987 508 ITERQVLALLFE-HAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLY 570 (573)
T ss_pred hhHHHHHHHHHH-HhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHh
Confidence 999999986554 557999999999999999999999999999999999999999988888765
No 90
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.4e-50 Score=500.59 Aligned_cols=300 Identities=27% Similarity=0.405 Sum_probs=264.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CCC-CCCCCCCc
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL-PNP-PLTSGLPA 119 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~-~~~-~~~~~~~~ 119 (1128)
++++++|++.+..|.+|++.+++++.++..+..|+..+...+..+..+..+++|+.++++.+++... +.. ........
T Consensus 255 ~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 334 (588)
T PRK13657 255 LAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGA 334 (588)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCe
Confidence 3456678888899999999999999999999999999999999999999999999999876543211 111 11111235
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
|+++|++|+|++ .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +++.|+
T Consensus 335 I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 335 VEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred EEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 999999999973 257999999999999999999999999999999999999999875422 356799
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+|
T Consensus 413 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i 492 (588)
T PRK13657 413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492 (588)
T ss_pred EEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999864 678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
+|||||||+||+++++.+++.+.. ..+++|+|+||||++.++.||+|++|++|++++.|++++++...+.|.++...
T Consensus 493 liLDEpts~LD~~t~~~i~~~l~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 569 (588)
T PRK13657 493 LILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRA 569 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHH
Confidence 999999999999999999987654 34689999999999999999999999999999999999999888888887764
No 91
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.2e-50 Score=494.43 Aligned_cols=300 Identities=26% Similarity=0.466 Sum_probs=265.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
+++++|.+.+..|.+|+|.+++++.++..+..|+..++..+..+..++++.+||.++++.+++......+.......|++
T Consensus 237 ~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~ 316 (569)
T PRK10789 237 LAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDV 316 (569)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEE
Confidence 34567888888999999999999999999999999999999999999999999999998754321111111112235999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..++|+|
T Consensus 317 ~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 395 (569)
T PRK10789 317 NIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVS 395 (569)
T ss_pred EEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence 9999999743 468999999999999999999999999999999999999999875432 345799999
Q ss_pred cCCCCCcccHHHHHhcCC-CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 001189 191 QVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 269 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~-~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illL 269 (1128)
|+|++|++||+|||.++. +.+++++.++++.+++.+++..+|+|++|.+|++|.+||||||||++|||||+++|+++||
T Consensus 396 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illl 475 (569)
T PRK10789 396 QTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILIL 475 (569)
T ss_pred cCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999985 4678899999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 270 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 270 DEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
|||||+||+++++.+++.+.. ..+++|+|+||||++.++.||+|++|++|+++++|+++++.++.+.|++++..
T Consensus 476 DEpts~LD~~~~~~i~~~l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 549 (569)
T PRK10789 476 DDALSAVDGRTEHQILHNLRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRY 549 (569)
T ss_pred ECccccCCHHHHHHHHHHHHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHH
Confidence 999999999999999987644 34789999999999999999999999999999999999999888888887754
No 92
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.5e-50 Score=496.78 Aligned_cols=301 Identities=28% Similarity=0.455 Sum_probs=264.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CC-CC-CCCCC
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NP-PL-TSGLP 118 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~-~~-~~-~~~~~ 118 (1128)
+.++++|++.+..|.+|++.++++..++..+..|+..++..+..+.+++.+++|+.++++.+++.... .+ .. .+...
T Consensus 257 ~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 336 (576)
T TIGR02204 257 VGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRG 336 (576)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCc
Confidence 34556788888899999999999999999999999999999999999999999999999865432111 11 01 11123
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++|++|+|+.+.++++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|.... +++.|
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 599999999998543468999999999999999999999999999999999999999875422 34579
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+||||+|++|++||+|||.++.+ .+++++.++++.+++.+.++.+|+|++|.+|++|.+||||||||++||||++++|+
T Consensus 417 ~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ 496 (576)
T TIGR02204 417 ALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP 496 (576)
T ss_pred eEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999864 57789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
+||||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++.++++.|+++..
T Consensus 497 ililDEpts~lD~~~~~~i~~~l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~ 573 (576)
T TIGR02204 497 ILLLDEATSALDAESEQLVQQALET-LMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLAR 573 (576)
T ss_pred eEEEeCcccccCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHh
Confidence 9999999999999999999886654 3468999999999999999999999999999999999999988888877654
No 93
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.2e-50 Score=503.29 Aligned_cols=299 Identities=27% Similarity=0.446 Sum_probs=266.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-CCCCCCCCcEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN-PPLTSGLPAIS 121 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~-~~~~~~~~~i~ 121 (1128)
+++++|++.+..|.+|+|.++++..+...+..|+..+...+..+.+++++++|+.++++.+++..... ...+.....|+
T Consensus 378 ~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~ 457 (694)
T TIGR01846 378 ILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAIT 457 (694)
T ss_pred HhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEE
Confidence 45678889889999999999999999999999999999999999999999999999998765432111 11111224699
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEE
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 189 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 189 (1128)
++|++|+|+++ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +|..|+||
T Consensus 458 ~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v 536 (694)
T TIGR01846 458 FENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVV 536 (694)
T ss_pred EEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEE
Confidence 99999999743 457999999999999999999999999999999999999999875421 35679999
Q ss_pred ecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 190 PQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 190 ~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+++|
T Consensus 537 ~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ili 616 (694)
T TIGR01846 537 LQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILI 616 (694)
T ss_pred ccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999864 67889999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
||||||+||+++++.+.+.+.. ..+++|+|+||||++.++.||+|++|++|+++++|++++++++++.|++++.
T Consensus 617 lDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~ 690 (694)
T TIGR01846 617 FDEATSALDYESEALIMRNMRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQ 690 (694)
T ss_pred EECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHH
Confidence 9999999999999999987654 3468999999999999999999999999999999999999998888988865
No 94
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.1e-50 Score=454.89 Aligned_cols=291 Identities=26% Similarity=0.441 Sum_probs=262.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEE
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS 121 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~ 121 (1128)
..++..|.|++..|++|+|.+++...+......|+-.....+.++..++.|++|+.++|...+....+- +.+.....+.
T Consensus 258 s~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m-~LP~P~g~L~ 336 (580)
T COG4618 258 SAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERM-PLPAPQGALS 336 (580)
T ss_pred HHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCC-CCCCCCceee
Confidence 345678899999999999999999999999999999999999999999999999999998754322221 2222334699
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEE
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 189 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 189 (1128)
++++++.-| +..+|+|+++||++++|+.++||||||||||||.++|.|..+|.+|.+.. +.++|||+
T Consensus 337 Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYL 415 (580)
T COG4618 337 VERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYL 415 (580)
T ss_pred EeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcC
Confidence 999999766 45689999999999999999999999999999999999999999886532 23479999
Q ss_pred ecCCCCCcccHHHHHh-cCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 190 PQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 190 ~Q~~~l~~~Tv~eni~-~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
||+..||+|||.|||. |+.+.|++++.++.+.++.++.+-.+|+||+|.||+.|.+|||||||||+||||||.+|.+++
T Consensus 416 PQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV 495 (580)
T COG4618 416 PQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV 495 (580)
T ss_pred cccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE
Confidence 9999999999999997 887889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||-|+||.+.++.+.+.+...+.+|.|+|+||||++.+..+|+|.+|++|++...|+.+|++++
T Consensus 496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999998877777789999999999999999999999999999999998887643
No 95
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=8.7e-51 Score=458.25 Aligned_cols=199 Identities=22% Similarity=0.325 Sum_probs=163.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|.++||+|.|.++. .++++++|-|.+++++++|||||+|||||++++.|.+.|+.|.|.-.-. .+++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 499999999998663 7899999999999999999999999999999999999999999865422 2344
Q ss_pred EEcCCCc---cccccHhhcccc-CC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 823 IIPQSPV---LFSGTVRFNLDP-FS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 823 ~v~Q~~~---lf~~Tv~~nl~~-~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+.-|+-. .++.+.-+++.+ +. ....+++...+.++|+....+..|. .+||+|||.||++||+++.
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhc
Confidence 4455432 234466666543 33 2456778888999888754444443 4799999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe-cChhHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPEEL 965 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~-g~~~~l 965 (1128)
.|.||||||||+|||.++...+.++|.+ ...+||+||||...|.+ +++|++.+||.+... |.....
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe--~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINE--FPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhc--cCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 9999999999999999999999999988 56789999999999999 999999999988765 555443
No 96
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.8e-50 Score=449.13 Aligned_cols=242 Identities=35% Similarity=0.684 Sum_probs=226.9
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.+||.++..++...+|+.|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 4699999999997544579999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+|+||+|.+|++|+++|++++...++++++++++.+++.+++.++|.++++.++++|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766778899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhhc
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 981 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 981 (1128)
|||||||++||+.+++.+++.|++.+.++|||+||||++++..||||++|++|++++.|+|++++++. +.|++++...+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEK-SHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCc-HHHHHHHhhcc
Confidence 99999999999999999999999887889999999999999889999999999999999999999854 67888888766
Q ss_pred hhhH
Q 001189 982 AANA 985 (1128)
Q Consensus 982 ~~~~ 985 (1128)
....
T Consensus 239 ~~~~ 242 (275)
T cd03289 239 RLKL 242 (275)
T ss_pred hHHH
Confidence 5443
No 97
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.7e-49 Score=486.25 Aligned_cols=289 Identities=26% Similarity=0.400 Sum_probs=255.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
+++++|++.+..|.+|+|.+++++.++..+..|+..++..+..+.+++.+++|+.++++.+++.... .........+++
T Consensus 241 ~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~i~~ 319 (544)
T TIGR01842 241 LVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-MPLPEPEGHLSV 319 (544)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-CCCCCCCCeEEE
Confidence 4566888888899999999999999999999999999999999999999999999999775532211 111112236999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|+++ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++..++|||
T Consensus 320 ~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 398 (544)
T TIGR01842 320 ENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398 (544)
T ss_pred EEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEec
Confidence 9999999742 368999999999999999999999999999999999999999875422 345799999
Q ss_pred cCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 001189 191 QVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 269 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illL 269 (1128)
|+|++|++|++|||.++.+ .+++++.++++.++++++++.+|+|++|.+|++|.+||||||||++|||||+++|+++||
T Consensus 399 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 399 QDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred CCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999986654 778899999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhh
Q 001189 270 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 270 DEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+||+++++.+.+.+.....+++|+|+|||+++.++.||+|++|++|++++.|+++++.+
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999998866443336899999999999999999999999999999999988754
No 98
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.6e-49 Score=481.54 Aligned_cols=260 Identities=29% Similarity=0.452 Sum_probs=228.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-C-C--CCCCCC
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN-P-P--LTSGLP 118 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~-~-~--~~~~~~ 118 (1128)
.++++|.+.+..|.++++.+++++.+...+..|+..++..+..+.+++++.+|+.++++.+++...+. + + ..+...
T Consensus 254 ~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (529)
T TIGR02868 254 GALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKP 333 (529)
T ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCc
Confidence 34567888888999999999999999999999999999999999999999999999998765321111 0 0 111223
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 187 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 187 (1128)
.|+++||+|+|+++ +++|+|+||++++|++++||||||||||||+++|+|+++|++|.+.. +|+.|+
T Consensus 334 ~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 334 TLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred eEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence 59999999999742 46999999999999999999999999999999999999999876432 245799
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
||||+|++|++||+|||.+|.+ .+++++.++++.+++++++..+|+|++|.+||+|.+|||||||||+|||||+++|+|
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999864 688999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCc
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 305 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 305 (1128)
||||||||+||+++++.+.+.+.. ..+++|+|+||||+
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~-~~~~~TvIiItHrl 529 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLA-ALSGKTVVVITHHL 529 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH-hcCCCEEEEEecCC
Confidence 999999999999999999987653 45789999999985
No 99
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.3e-48 Score=481.09 Aligned_cols=300 Identities=24% Similarity=0.382 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--CCCCCCCc
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGLPA 119 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~~~ 119 (1128)
++++++|++.+..|.++++.+++++.++..+..|+..+...+..+..++.+++|+.++++.+++...+.. ........
T Consensus 255 ~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (585)
T TIGR01192 255 MCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGA 334 (585)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCe
Confidence 3455678888889999999999999999999999999999999999999999999999876543211111 11112235
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|++|+|++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. +++.++
T Consensus 335 i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 335 VEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred EEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 999999999974 246999999999999999999999999999999999999999875422 345799
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
||||+|++|++|++|||.++.+ .+++++.++++.+++.+.+..+|+|++|.+|++|.+||||||||++|||||+++|++
T Consensus 413 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i 492 (585)
T TIGR01192 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI 492 (585)
T ss_pred EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999854 567888899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
+|||||||+||+++++.+.+.+. ...+++|+|+||||++.++.||+|++|++|++++.|+++++.++++.|++++..
T Consensus 493 lilDEpts~LD~~~~~~i~~~l~-~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 569 (585)
T TIGR01192 493 LVLDEATSALDVETEARVKNAID-ALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRR 569 (585)
T ss_pred EEEECCccCCCHHHHHHHHHHHH-HHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHh
Confidence 99999999999999999987654 345689999999999999999999999999999999999999998889888754
No 100
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.6e-48 Score=473.65 Aligned_cols=270 Identities=29% Similarity=0.448 Sum_probs=236.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEEeE
Q 001189 46 SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG 125 (1128)
Q Consensus 46 ~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (1128)
.++++.+..|.+|++.+++++.++..+..|+..+...+..+..++.+++|+.++++.+++.....+......+.|+++|+
T Consensus 247 ~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v 326 (529)
T TIGR02857 247 VYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGL 326 (529)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEE
Confidence 34555566889999999999999999999999999999999999999999999997543211111111111236999999
Q ss_pred EEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEecCC
Q 001189 126 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVS 193 (1128)
Q Consensus 126 ~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~ 193 (1128)
+|+|++. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +++.|+||+|+|
T Consensus 327 ~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~ 405 (529)
T TIGR02857 327 SVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHP 405 (529)
T ss_pred EEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCC
Confidence 9999843 358999999999999999999999999999999999999999875421 355799999999
Q ss_pred CCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCc
Q 001189 194 WIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 272 (1128)
Q Consensus 194 ~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEp 272 (1128)
++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+++|||||
T Consensus 406 ~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ 485 (529)
T TIGR02857 406 FLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485 (529)
T ss_pred cccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 9999999999999864 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEE
Q 001189 273 LSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 317 (1128)
Q Consensus 273 ts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 317 (1128)
||+||+++++.+++.+.. ..+++|+|+||||++.++.||+|++|
T Consensus 486 ts~lD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 486 TAHLDAETEALVTEALRA-LAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred ccccCHHHHHHHHHHHHH-hcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999987654 44789999999999999999999985
No 101
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-49 Score=400.56 Aligned_cols=215 Identities=28% Similarity=0.476 Sum_probs=191.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC-CChHHhhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK-FGLMDLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~-~~~~~~r~~i 821 (1128)
.|+++||+++|+.. .+|+|||++|++||+++|+||||||||||+++|.++-+|++|+|.+||.++.. .+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 38999999999754 79999999999999999999999999999999999999999999999987743 3678899999
Q ss_pred EEEcCCCccccc-cHhhccccCC----CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS----EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~----~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
|+|+|+..||.. |+.+|+.... ..+ .+.-.+.|+++|+.+..+..| .+||||||||++||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 999999999977 9999996431 122 233455677777777777766 57999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
|||..+|+++|+|||||+|||+....+.+.++++.+ |.|+|+|||.+.++.+ ||||+.|++|+|++.|+|+++..++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 999999999999999999999999999999999774 7899999999999998 99999999999999999999998764
No 102
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-48 Score=425.09 Aligned_cols=296 Identities=30% Similarity=0.510 Sum_probs=264.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CC-CCCC-CCCCcEE
Q 001189 45 VSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL-PN-PPLT-SGLPAIS 121 (1128)
Q Consensus 45 ~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~-~~-~~~~-~~~~~i~ 121 (1128)
.+.+...+..|.+|++.+...-.+..++..|+..+...+..+.+++.-++++.+.+..+.+..+ |. ++.. -....+.
T Consensus 185 m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~ 264 (497)
T COG5265 185 MTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVA 264 (497)
T ss_pred HhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEE
Confidence 3345556678999999999999999999999999999999999999999999999887654322 11 1222 2234699
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEE
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 189 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 189 (1128)
|.|++|.|.+ .+|+|+++||++++|+.+++||++|+||||++++|.++|++.+|.+.. .|+.||.|
T Consensus 265 F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~V 342 (497)
T COG5265 265 FINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIV 342 (497)
T ss_pred EEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcC
Confidence 9999999974 589999999999999999999999999999999999999999986543 35569999
Q ss_pred ecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 190 PQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 190 ~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
||+..|||.|+..||.+|++ ..++++.++++.+++++++..+|+|++|.|||+|-.||||+|||||+||+++++|+||+
T Consensus 343 PQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~ 422 (497)
T COG5265 343 PQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI 422 (497)
T ss_pred cccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999976 46788999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
|||+||+||.++++.|... ++...+|+|.++|.||++.+-.||.|+||++|+|+|.|+|++|+..++.|.+++.
T Consensus 423 ~deatsaldt~te~~iq~~-l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 423 LDEATSALDTHTEQAIQAA-LREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred EehhhhHhhhhHHHHHHHH-HHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 9999999999999999765 4555689999999999999999999999999999999999999999999998873
No 103
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-47 Score=430.89 Aligned_cols=195 Identities=20% Similarity=0.316 Sum_probs=163.0
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..+++.+|+|.|.++..+.+.++++++..-+++++||+||+||||+++++.+...|.+|.+-+.+ |.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 35999999999988765799999999999999999999999999999999999999999987764 6789
Q ss_pred EEEcCCCccc-cccHhh--cc-ccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 822 GIIPQSPVLF-SGTVRF--NL-DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 822 ~~v~Q~~~lf-~~Tv~~--nl-~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|..|..+=+ +..+.. -+ ..+...+++++++.+...|+..-+...+ -.+||||||-||++|.....
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcC
Confidence 9999987533 222221 11 1122347889998888866654433322 25699999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
+|.+|+|||||++||.++...+-++|+. .+..||+|||+.+++.. |+.+|+.++|+|.-.
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~--F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKN--FNGGVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHh--cCCcEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 9999999999999999999999999987 35569999999999998 999999999999764
No 104
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=429.04 Aligned_cols=228 Identities=23% Similarity=0.361 Sum_probs=200.9
Q ss_pred CCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecC
Q 001189 736 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIA 810 (1128)
Q Consensus 736 ~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~ 810 (1128)
..||..+.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.
T Consensus 73 ~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 73 EDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3589999999999999997544579999999999999999999999999999999999996 57999999999997
Q ss_pred --CCChHHhhhceEEEcCCCccccccHhhccccCC---CCCHHHH-----HHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 811 --KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDADL-----WEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 811 --~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~~~~~i-----~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
..+...+|+.++||||+|.+|++|+++|+.+.. ..++++. .++++.+++ +.++++.+++.+.+
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~ 225 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNA 225 (329)
T ss_pred ccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCccc
Confidence 345567899999999999999999999998432 2333333 344455543 34567888999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
||||||||+|||||++++|+||||||||++||+.+.+.+++.|++.++++|+|+|||+++++.+ ||||+||++|+|++.
T Consensus 226 LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999998888999999999999998 999999999999999
Q ss_pred cChhHHhhcCC
Q 001189 960 DTPEELLSNEG 970 (1128)
Q Consensus 960 g~~~~l~~~~~ 970 (1128)
|+|+++...+.
T Consensus 306 g~~~~l~~~~~ 316 (329)
T PRK14257 306 GETKTIFIHPK 316 (329)
T ss_pred CCHHHHhcCCC
Confidence 99999987553
No 105
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-47 Score=406.44 Aligned_cols=219 Identities=31% Similarity=0.470 Sum_probs=193.4
Q ss_pred EEEEEEEEEeCCC---CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---h
Q 001189 744 IKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 817 (1128)
Q Consensus 744 i~~~~v~~~y~~~---~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 817 (1128)
|++++|++.|... ...+|+||||+|++||++||+|+||||||||++++.++-+|++|+|.+||.|+..++... +
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 246999999999999999999999999999999999999999999999999988777554 5
Q ss_pred hhceEEEcCCCcccc-ccHhhccccC---CCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 818 RKILGIIPQSPVLFS-GTVRFNLDPF---SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~-~Tv~~nl~~~---~~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
|++||+|+|++.|++ .||.+|+.+- ...+ .+++.+.|+.+|+.+...+.| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 778999999999997 5999999742 1222 345667777788777776666 68999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+|||||..+|+|||.|||||+|||+|.+.|.+.|++..+ |-||++|||.|+.+++ ||||.||++|+|+|.|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999998653 7899999999999999 9999999999999999999999
Q ss_pred hcCCCch
Q 001189 967 SNEGSSF 973 (1128)
Q Consensus 967 ~~~~~~~ 973 (1128)
.++....
T Consensus 231 ~~Pk~~~ 237 (339)
T COG1135 231 ANPKHAI 237 (339)
T ss_pred cCcchHH
Confidence 8775433
No 106
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-47 Score=394.18 Aligned_cols=218 Identities=32% Similarity=0.522 Sum_probs=195.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+|+|||++|.+ +.+++|+||+|++||.+.++|||||||||++++|.|+++|++|+|+|||.++++++..++|++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999974 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHH--HHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLK--DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~--~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|-|...||.. ||.+|+.... ..+ ++++.+.++.+++. ++..+.| ..|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHH
Confidence 9999999976 9999996432 122 34566667777764 4666666 579999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
||..+|+|||+|||.++|||-++..+|+-+.++.+ ++|+|+||||+++... +|||.+|++|+++.+++|+++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999987653 7999999999999877 99999999999999999999999886
Q ss_pred CchH
Q 001189 971 SSFS 974 (1128)
Q Consensus 971 ~~~~ 974 (1128)
..|-
T Consensus 229 n~FV 232 (309)
T COG1125 229 NDFV 232 (309)
T ss_pred HHHH
Confidence 6554
No 107
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=374.09 Aligned_cols=219 Identities=26% Similarity=0.449 Sum_probs=198.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-----ceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-----GRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~-----G~I~i~g~~i~~--~~~~ 815 (1128)
.++++|+++.|+.. .+|+|||++|++++++|++|||||||||+|++|.|+.+..+ |+|.++|.+|.+ ++..
T Consensus 7 ~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 7 AIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 48999999999754 79999999999999999999999999999999999999875 999999999976 4688
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~-------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
.+|+++|+|+|.|.-|..||.||+.++.+ .-|+.+.++|+.+.||+.+.. .+.+.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHH
Confidence 99999999999999999999999976421 124557888999999987753 2345667899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||||.-+|+|||||||||+|||.+...|++.|.++.++-||++|||.|.-..+ +|+...+..|+++|+|..+++..
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 99999999999999999999999999999999999999889999999999999888 99999999999999999999987
Q ss_pred cCC
Q 001189 968 NEG 970 (1128)
Q Consensus 968 ~~~ 970 (1128)
++.
T Consensus 238 ~P~ 240 (253)
T COG1117 238 NPK 240 (253)
T ss_pred Ccc
Confidence 653
No 108
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.9e-44 Score=399.82 Aligned_cols=237 Identities=50% Similarity=0.827 Sum_probs=217.1
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
.|.|+++|++++|+....++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 46799999999997533469999999999999999999999999999999999999999999999999998888888999
Q ss_pred eEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
++|+||+|.+|.+|+++|+.+......+++.++++..++.+++..+|.|+++.+++.+.+||||||||++||||++++|+
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998654344566788888889999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||||++|++|++++.|+++++.+..++.|..++
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999987678999999999999988999999999999999999999876655555544
No 109
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.2e-45 Score=375.21 Aligned_cols=219 Identities=30% Similarity=0.510 Sum_probs=191.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hhh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~ 819 (1128)
.|++++|+++|+.. .+++||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+.+++..+ +|+
T Consensus 8 ~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 59999999999654 7999999999999999999999999999999999999999999999999999888654 588
Q ss_pred ceEEEcCCCccccc-cHhhcccc-CC---CCCHHHHHH----HHHHhcHHHH-HHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDP-FS---EHSDADLWE----ALERAHLKDA-IRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~-~~---~~~~~~i~~----~l~~~~l~~~-i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
++|+++|...||+. ||+||+.+ .. ..++..+.+ .|+.+||... .+.+| ..||||+++|+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KRv 154 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKRV 154 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHHH
Confidence 99999999999976 99999975 22 334444433 3555666554 44444 67999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+||||+.-+|+||++||||+||||.+...+-+.|+++.+ +.|+++||||++++.. ||||+++.+|+|+..|+++|+.
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999998764 7899999999999988 9999999999999999999999
Q ss_pred hcCCCchH
Q 001189 967 SNEGSSFS 974 (1128)
Q Consensus 967 ~~~~~~~~ 974 (1128)
+..+....
T Consensus 235 ~sd~P~v~ 242 (263)
T COG1127 235 ASDDPWVR 242 (263)
T ss_pred hCCCHHHH
Confidence 86653333
No 110
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.9e-44 Score=392.93 Aligned_cols=231 Identities=37% Similarity=0.603 Sum_probs=209.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+...+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999996433579999999999999999999999999999999999999999999999999988787788889999
Q ss_pred EcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
+||++.+|..|+++|+.+... ....++.+.++..++.++++.+|.|+++..+..+.+||||||||++||||++.+|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999998899999976432 3455677777888899999999999999999999999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHH
Q 001189 903 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 975 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~ 975 (1128)
||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|++++++.+. +.|..
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~ 232 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN-GLYAY 232 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc-ChHHH
Confidence 9999999999999999999999987789999999999999779999999999999999999998763 34443
No 111
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=9.2e-44 Score=435.73 Aligned_cols=264 Identities=18% Similarity=0.277 Sum_probs=226.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cC---CCC------CCCCCCCcEEEEe
Q 001189 55 GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKI-LL---PNP------PLTSGLPAISIRN 124 (1128)
Q Consensus 55 ~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~-~~---~~~------~~~~~~~~i~~~~ 124 (1128)
+.+|++.+++++.+...+..|+..+...+..+.++.++++||.++++.+++. .. +.. +.......|+++|
T Consensus 263 ~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (555)
T TIGR01194 263 ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKD 342 (555)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEE
Confidence 6899999999999999999999999999999999999999999998642111 00 100 0001124699999
Q ss_pred EEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 125 GYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 125 ~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
++|+|++++ .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..++||+
T Consensus 343 v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 422 (555)
T TIGR01194 343 VHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIF 422 (555)
T ss_pred EEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEc
Confidence 999997532 246999999999999999999999999999999999999999885421 345699999
Q ss_pred cCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 001189 191 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 270 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLD 270 (1128)
|++++|++|+++|+ ....+++++.++++.+++.++++.+|+|++|. .+|||||||||+||||++++|+++|||
T Consensus 423 q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililD 495 (555)
T TIGR01194 423 ADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFD 495 (555)
T ss_pred cChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999995 23456778889999999999999999999984 789999999999999999999999999
Q ss_pred CcCCCcCHHHHHHHHHHHHcc-ccCCcEEEEEccCccchhcCCEEEEEeCCeEeee
Q 001189 271 DPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 325 (1128)
Q Consensus 271 Epts~LD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 325 (1128)
||||+||+++++.+++.+++. ..+++|+|+||||++.++.||+|++|++|++++.
T Consensus 496 E~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 496 EWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999998866542 2468999999999999999999999999999863
No 112
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-45 Score=371.75 Aligned_cols=203 Identities=32% Similarity=0.496 Sum_probs=179.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.|+++|++++|+. ..+|+||||+|++||+++|+|||||||||||++|.|+.+|++|.+.. +|.+
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 5899999999973 57999999999999999999999999999999999999999875432 3557
Q ss_pred EEEEecCCCCC-cccHHHHHhcCC----CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGS----AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
+|+|+|+..|| ..||.|||.++. ..+ +++..+.++..+|.+..+..|. +|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHH
Confidence 99999999998 689999999873 112 2344556788899988888884 899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhcc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
||||+-+|+++|+|||||||||+....+.+-+......|.|.|+|||.+.|.+. ||||+.|++|+|+++|+++++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999998766667789999999999999987 6999999999999999999988764
No 113
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.9e-44 Score=387.94 Aligned_cols=221 Identities=69% Similarity=1.076 Sum_probs=206.6
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|.|+++|++++|+...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 45899999999975434799999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+|+||++.+|.+|+++|+.++.....+++.++++..++.+++.++|.|+++..+....+||||||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766667788899999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecCh
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~ 962 (1128)
|||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987777999999999999988999999999999988763
No 114
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.6e-44 Score=387.84 Aligned_cols=213 Identities=34% Similarity=0.539 Sum_probs=189.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|.|+++|.+|+|.+||+++.+++..++.++++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 3789999999974 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcc-ccccHhhcccc--------CCCCC--H-HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 823 IIPQSPVL-FSGTVRFNLDP--------FSEHS--D-ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 823 ~v~Q~~~l-f~~Tv~~nl~~--------~~~~~--~-~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
||||.+.. |.-||+|-+.. +...+ | +.+.++|+..++.++.++. -..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHH
Confidence 99999754 45599875532 22222 2 3477889998888776653 2579999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+++|+||+|||||++||....-.+++.++++. ++.|+|+|.||++.+.. ||++++|++|+++..|+|+|.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999876 36999999999999877 99999999999999999999885
Q ss_pred c
Q 001189 968 N 968 (1128)
Q Consensus 968 ~ 968 (1128)
.
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 3
No 115
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-43 Score=383.33 Aligned_cols=226 Identities=43% Similarity=0.707 Sum_probs=207.7
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|+++|++++|+.. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 358999999999632 3699999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
+|+||++.+|.+|+++|+.++.. ....++.++++..++.++++.+|.|+++.++....+||||||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999986533 34567788888899999999999999999998889999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
+|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999987678999999999999988999999999999999998888754
No 116
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-43 Score=383.99 Aligned_cols=226 Identities=38% Similarity=0.644 Sum_probs=206.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+....++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999996543369999999999999999999999999999999999999999999999999988777788889999
Q ss_pred EcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
+||++.+|..|+++|+.+... ....++.+.++..++.++++.+|.|+++..+....+||||||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999986533 3455677777888899999999999999988888999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 001189 903 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 9999999999999999999999887789999999999999889999999999999999999987654
No 117
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=404.80 Aligned_cols=266 Identities=20% Similarity=0.278 Sum_probs=214.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCCCC
Q 001189 54 GGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKA 133 (1128)
Q Consensus 54 ~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~ 133 (1128)
.+.+++..+|+.+++++.+..|+..+|..... ..|+..|+..++..........+....|+++|++++|+. .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~-~ 93 (329)
T PRK14257 22 LNELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMN-R 93 (329)
T ss_pred cchhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccCCCCcCceEEEEeeEEEecC-C
Confidence 36788999999999999999888877665433 568888887654211100111223357999999999974 2
Q ss_pred CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCCce--------------eecCcEEEEecCCC
Q 001189 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASA--------------VIRGTVAYVPQVSW 194 (1128)
Q Consensus 134 ~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~--------------~~~~~i~~v~Q~~~ 194 (1128)
.+++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|.+. .+++.++||||+||
T Consensus 94 ~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 3579999999999999999999999999999999999986 4566422 23567999999999
Q ss_pred CCcccHHHHHhcCCC---CC-HH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 195 IFNATVRDNILFGSA---FE-PA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 195 l~~~Tv~eni~~g~~---~~-~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
+|++||+|||.|+.. .+ .+ .+..+++.|++.+++ .+.+++++.+|||||||||+|||||+++|+|
T Consensus 174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~I 246 (329)
T PRK14257 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEPEV 246 (329)
T ss_pred cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 999999999998642 22 22 255667777765443 3568899999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhcc
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|||||||++||+++.+++.+. +....+++|+|+|||+++++.. ||+|++|++|++++.|+++++.+.+
T Consensus 247 lLLDEPts~LD~~~~~~i~~~-i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 247 LLMDEPTSALDPIATAKIEEL-ILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred EEEeCCcccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999997764 4544567999999999999887 9999999999999999999987653
No 118
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-43 Score=394.16 Aligned_cols=217 Identities=26% Similarity=0.420 Sum_probs=196.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|++. .+|+|+||+|+.||.++|+|||||||||||++|+|+.+|++|+|.|||.++++++|.+ +.|+
T Consensus 3 ~i~l~~v~K~yg~~--~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 48999999999753 2999999999999999999999999999999999999999999999999999999854 7899
Q ss_pred EEcCCCccccc-cHhhccccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~-------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
+|+|+..||.. ||++|+.+.-+ ..+.++.++++..++.+.+++.| .+||||||||++||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999976 99999986422 22567888888888888888877 5799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+++|+++|||||.|+||+..+..+...|+++.+ +.|+|.||||..++.. +|||+||++|+|...|+|.|+..++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999999999888653 6899999999999887 999999999999999999999988766
Q ss_pred chH
Q 001189 972 SFS 974 (1128)
Q Consensus 972 ~~~ 974 (1128)
.|-
T Consensus 228 ~fV 230 (338)
T COG3839 228 LFV 230 (338)
T ss_pred hhh
Confidence 554
No 119
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-42 Score=427.52 Aligned_cols=199 Identities=28% Similarity=0.385 Sum_probs=165.8
Q ss_pred CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEecCCCChHHhhhceEEEcCCCcccc-
Q 001189 756 ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS- 832 (1128)
Q Consensus 756 ~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 832 (1128)
+.+..|+||+=-++||-.+||+|+||||||||+++|+|-..- .+|+|+|+|.+..+ +..++.+|||.|++.-..
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 445799999999999999999999999999999999987532 47999999998754 678999999999996554
Q ss_pred ccHhhccccC------CCCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC-CE
Q 001189 833 GTVRFNLDPF------SEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS-KI 901 (1128)
Q Consensus 833 ~Tv~~nl~~~------~~~~~~~----i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p-~i 901 (1128)
-||||-|.+. .+.++++ ++++++..++.+.- |..||..|..||..||+||.||--|+.+| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 4999988642 1223332 45555555555433 45688888999999999999999999999 88
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh--hhhcCEEEEEe-CCEEEEecChhH
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILLLD-SGRVLEYDTPEE 964 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~--~~~~D~i~vl~-~G~i~~~g~~~~ 964 (1128)
|+|||||||||.++...|.+.++++. .|+||+.+-|.++- .+..|+++.|+ .|+.+..|+..+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999976 58999999999876 45699999997 799999988654
No 120
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.9e-43 Score=403.21 Aligned_cols=219 Identities=27% Similarity=0.425 Sum_probs=188.0
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hh
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 818 (1128)
|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++..++..+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999998887654 47
Q ss_pred hceEEEcCCCcccc-ccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~-~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
++|+|+||++.+|. .|+++|+.+.. ..+. +++.++++.+++.+..++ ...+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 78999999999996 59999996421 1222 334556666666554433 34689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|+|||||||||+||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 7899999999999987 99999999999999999999987
Q ss_pred cCCCch
Q 001189 968 NEGSSF 973 (1128)
Q Consensus 968 ~~~~~~ 973 (1128)
.+...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 654433
No 121
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-43 Score=377.21 Aligned_cols=209 Identities=29% Similarity=0.447 Sum_probs=182.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+.. +||+||||+|++|++++|+||||||||||+++|+|+++|.+|+|.+.|.+++.... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 49999999999754 59999999999999999999999999999999999999999999999988765432 56899
Q ss_pred EEcCCC---ccccccHhhccccCC-----------CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 823 IIPQSP---VLFSGTVRFNLDPFS-----------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 823 ~v~Q~~---~lf~~Tv~~nl~~~~-----------~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
||||.. +-|..||+|-+.... ..+.+.+.++|+++++.++..+. -..|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~-----------i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQ-----------IGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCc-----------ccccCcHHHHH
Confidence 999966 346779998764321 12247899999999998876542 24699999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+.|||||+++|++|+|||||+|+|+.++..+.+.|+++.+ |+|||+||||++.+.. ||+|+.|++ ++...|+|++..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhcc
Confidence 9999999999999999999999999999999999999775 8999999999999988 999999964 899999999987
Q ss_pred hc
Q 001189 967 SN 968 (1128)
Q Consensus 967 ~~ 968 (1128)
..
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
No 122
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.9e-42 Score=420.42 Aligned_cols=246 Identities=24% Similarity=0.404 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCC
Q 001189 69 FAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVG 148 (1128)
Q Consensus 69 ~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G 148 (1128)
...+..|+..+...+..+..++.+++|+.+++..+++...+.+...+....++++|++|+|+. ++++|+|+||++++|
T Consensus 272 ~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G 349 (547)
T PRK10522 272 LLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRG 349 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCceEEEEEEEEEeCC--CCeEEecceEEEcCC
Confidence 334668999999999999999999999999976543211111111111236999999999973 357999999999999
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCCCCCce------------eecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 216 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 216 (1128)
++++|+||||||||||+++|+|+++|++|.+. .++++|+|++|+|.+|++|++|| +...+++++.
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~ 426 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVE 426 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHH
Confidence 99999999999999999999999999987542 14567999999999999999999 4455667777
Q ss_pred HHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CC
Q 001189 217 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SG 295 (1128)
Q Consensus 217 ~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~ 295 (1128)
++++.+++..++.. +++. .+|.+||||||||++||||++++|+++|||||||+||+++++.+++.+..... .+
T Consensus 427 ~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~ 500 (547)
T PRK10522 427 KWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMG 500 (547)
T ss_pred HHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 78888877766542 3221 14789999999999999999999999999999999999999999887654322 48
Q ss_pred cEEEEEccCccchhcCCEEEEEeCCeEeee
Q 001189 296 KTRVLVTNQLHFLSQVDRIILVHEGMVKEE 325 (1128)
Q Consensus 296 ~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 325 (1128)
+|+|+||||++.+..||+|++|++|++++.
T Consensus 501 ~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 501 KTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999975
No 123
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.5e-42 Score=375.96 Aligned_cols=219 Identities=37% Similarity=0.604 Sum_probs=198.7
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|.|+++|++++|+....++++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++...+...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 35899999999964334699999999999999999999999999999999999999999999999999877777778899
Q ss_pred EEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
+|+||++.+|..|+++|+.+... ....++.+.++..++.+.+..+|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988899999975432 34556778889999999999999999999888888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEec
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 960 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g 960 (1128)
+|||||||++||+.+...+.+.|++..+++|||++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988669999999999998764
No 124
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-42 Score=378.54 Aligned_cols=224 Identities=43% Similarity=0.717 Sum_probs=206.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+.+ .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999633 369999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
+||++.+|+.|+++|+.+.. ...+.++.+.++.+++.+.+..+|.|+++.+.....+||||||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997643 23556677788888999999999999999999889999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 903 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||||||++||+.+...+.+.|.+..++.|+|++||+++.+..||++++|++|++++.|+++++..+
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999987668899999999999988999999999999999999988764
No 125
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-43 Score=377.14 Aligned_cols=215 Identities=29% Similarity=0.506 Sum_probs=194.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC-CCChHHhhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA-KFGLMDLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~-~~~~~~~r~~i 821 (1128)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.++|.++. ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48999999999876 68999999999999999999999999999999999999999999999999988 47888999999
Q ss_pred EEEcCCC--ccccccHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 822 GIIPQSP--VLFSGTVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 822 ~~v~Q~~--~lf~~Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
|||+|+| .+|..||.+.+.+... .. ++++.++++.+++.++.++.| .+||||||||++||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 6899999999876532 22 345777888888887766655 57999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
.+|..+|++||||||||+||+...+.+.+.++++.+ ++|+|++|||++.+.. |||+++|++|+++.+|+|.++.++.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999999999999999999999999999999999764 4799999999999998 9999999999999999999988653
No 126
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-42 Score=371.85 Aligned_cols=207 Identities=61% Similarity=0.992 Sum_probs=184.8
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh
Q 001189 738 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
||..+.++++|++++|+....++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 78888999999999997533469999999999999999999999999999999999999999999999999988888788
Q ss_pred hhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 818 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|+.|+|+||+|.+|.+|+++|+.++....++++.++++ ++.....|||||+||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 89999999999999999999997654444443333332 234567899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecCh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~ 962 (1128)
+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999987678999999999999988999999999999998864
No 127
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-42 Score=362.31 Aligned_cols=221 Identities=31% Similarity=0.475 Sum_probs=186.2
Q ss_pred cEEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC-hHHhhh
Q 001189 743 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~r~ 819 (1128)
.++++|+++.|+... .++|+||||+|.+||++||+|+||||||||.++|.|+.+|++|+|.++|.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997541 24999999999999999999999999999999999999999999999998766543 234677
Q ss_pred ceEEEcCCCcc-cc--ccHhhccc-cCCC----CCHHHHHHHHHHhcHH-HHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 820 ILGIIPQSPVL-FS--GTVRFNLD-PFSE----HSDADLWEALERAHLK-DAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 820 ~i~~v~Q~~~l-f~--~Tv~~nl~-~~~~----~~~~~i~~~l~~~~l~-~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
.+.+|+|||.- ++ .||++-|. +... ....+++++|+.+++. +++.+.| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 89999999952 22 27776553 2221 2345588888888875 4555665 579999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCC--cEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~--~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||.-+|++||||||||+||+-..+.|++.|.+..++ -|.|+||||+..+.. ||||+||++|+++|.++..++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999999987754 599999999999999 99999999999999999999987
Q ss_pred cCCCchH
Q 001189 968 NEGSSFS 974 (1128)
Q Consensus 968 ~~~~~~~ 974 (1128)
.+...|.
T Consensus 232 ~~~h~yt 238 (252)
T COG1124 232 HPSHPYT 238 (252)
T ss_pred CCccHHH
Confidence 6444444
No 128
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-43 Score=392.84 Aligned_cols=217 Identities=28% Similarity=0.428 Sum_probs=196.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|+. ..+++|+||+|++||.+.++|||||||||+|++|+|+..|++|+|.+||.|+..+++ -++.|+
T Consensus 5 ~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp--~kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP--EKRPIG 80 (352)
T ss_pred eEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hhcccc
Confidence 5999999999973 479999999999999999999999999999999999999999999999999999887 467899
Q ss_pred EEcCCCccccc-cHhhccccCCC----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~----~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|+|+..||.. ||++|+.|.-. .. ++++.++|+.+++.++-.+.| ..||||||||++|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 99999999976 99999986432 22 246888899999988887776 579999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
||..+|++||||||.|+||..-+..++.-|++.. .|.|.|+||||-++... +|||+||++|+|...|+|+|+..++.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 9999999999999999999999999999888754 37899999999999877 99999999999999999999998876
Q ss_pred CchH
Q 001189 971 SSFS 974 (1128)
Q Consensus 971 ~~~~ 974 (1128)
..|-
T Consensus 230 ~~fV 233 (352)
T COG3842 230 TRFV 233 (352)
T ss_pred hHHH
Confidence 5554
No 129
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.9e-42 Score=378.33 Aligned_cols=225 Identities=41% Similarity=0.660 Sum_probs=204.1
Q ss_pred EEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 744 IKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
|+++|++++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999642 246999999999999999999999999999999999999999999999999998777777788899
Q ss_pred EEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 823 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
|+||++.+|..|+++|+.+... ...+++.+.++..++.+++..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998899999976432 345566777787889999999999999998888899999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||||++||+.+.+.+.+.|++..+++|||++||+++++..||+|++|++|++++.|+++++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999987677999999999999988999999999999999999888754
No 130
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4e-43 Score=349.38 Aligned_cols=206 Identities=28% Similarity=0.430 Sum_probs=186.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~~ 820 (1128)
|+|+||+++|+.. +++|+||||+|++||.+-|+||||||||||+++|++..+|++|+|.++|.|++++...+ +|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999876 68999999999999999999999999999999999999999999999999998887655 7999
Q ss_pred eEEEcCCCccccc-cHhhccccCC----C---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFS----E---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~----~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
||+|+||.-|... ||.||+.+-- . .-.+++.++|+.+||.+-...+| ..||||||||++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 9999999987755 9999997421 1 12466888999999999888888 57999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
||++.+|++||-||||-+|||++...|++.+.+.. .|.||++.||+.+.+.. --|++.+++|+++....
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999865 58999999999999998 67999999999987654
No 131
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-42 Score=366.34 Aligned_cols=197 Identities=26% Similarity=0.372 Sum_probs=174.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.+++++|+++|+. ..||+|+||+|++||+|+|+||||||||||+++|.|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4899999999975 4799999999999999999999999999999999999999999999999988543 35799
Q ss_pred EEcCCCccccc-cHhhccccCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~~-------~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
||+|++.||.. ||++|+.+.-+. ..+.+.+.|+.+|+.++-++.| .+||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHH
Confidence 99999999998 999999753221 2345777888888888877777 5799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC--CEEE
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVL 957 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~--G~i~ 957 (1128)
|+.+|+||+||||.++||+.|+..+++.|.++. .++||++|||+.++... +|||+||.+ |+|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999999999998865 36999999999999877 999999998 5553
No 132
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-42 Score=379.63 Aligned_cols=212 Identities=30% Similarity=0.451 Sum_probs=180.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh---HHhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r~~ 820 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999964 369999999999999999999999999999999999999999999999999987664 457888
Q ss_pred eEEEcCCCccccc-cHhhccccCC----CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFS----EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~----~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
|+|+||++.+|.. |+++|+.+.. ..+.. ++.++++..++ .........+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGL-----------RGAEDLYPAELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHHH
Confidence 9999999999876 9999996431 12222 23334444443 333344446799999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++++.. ||||++|++|++++.|+++++...
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999998653 7899999999999887 999999999999999999998753
No 133
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-42 Score=357.96 Aligned_cols=212 Identities=28% Similarity=0.415 Sum_probs=184.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC---hHHhhh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r~ 819 (1128)
.|+++||++.|+.+ +.+|+||||+|++||.|+|+||||||||||+++|.|+.+|++|+|.++|.++.... ...+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 48999999999644 58999999999999999999999999999999999999999999999999998887 445678
Q ss_pred ceEEEcCCCccccc-cHhhccccC------------CCCCHH---HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPF------------SEHSDA---DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 883 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~------------~~~~~~---~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSg 883 (1128)
+||+|+|++.|-+. ||.+|+..+ +-++.+ ...++|+++++.+.. -.+..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A-----------~qra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA-----------YQRASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH-----------HHHhccCCc
Confidence 89999999998865 999997421 223333 345556666655433 344578999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 884 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 884 Gqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
||+||++|||||+++|+|+|-|||+++|||.+.+.+++.|++.. .|.|||+.-|+++.+.. ||||+-|++|+|+..|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999865 47999999999999988 9999999999999999
Q ss_pred ChhHHh
Q 001189 961 TPEELL 966 (1128)
Q Consensus 961 ~~~~l~ 966 (1128)
+++|+-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999864
No 134
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.1e-42 Score=361.57 Aligned_cols=204 Identities=29% Similarity=0.413 Sum_probs=172.2
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---h-
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L- 817 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~- 817 (1128)
++++||++.|.... ..+|+++||+|++||.++|+||||||||||+++|.|+..|++|.|.++|.|+..++... +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67899999996432 36999999999999999999999999999999999999999999999999999888544 3
Q ss_pred hhceEEEcCCCccccc-cHhhcccc---CCCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 818 RKILGIIPQSPVLFSG-TVRFNLDP---FSEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~-Tv~~nl~~---~~~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
|++||||+|+..|.+. |++||+.. +.... .....+.++..++.+... .....+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 4569999999998866 99999973 22222 233444455545554333 123468999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEE
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVL 957 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~ 957 (1128)
||||||+.+|+|++.||||.+||.++.+.|.+.+++..+ ++|+|+||||......|||++.|.+|++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999998753 78999999999999999999999999953
No 135
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.8e-42 Score=375.76 Aligned_cols=211 Identities=32% Similarity=0.507 Sum_probs=178.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-----CCCCceEEECCEecCCCC--hHH
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILIDGFDIAKFG--LMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~-----~p~~G~I~i~g~~i~~~~--~~~ 816 (1128)
|+++||+++|+.. ++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 5789999999643 6999999999999999999999999999999999999 999999999999988766 556
Q ss_pred hhhceEEEcCCCccccccHhhccccCCC---C-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFSE---H-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
+|++++|+||++.+|..|+++|+.+... . . ++++.++++..++.+.+.+.+. +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 7889999999999887799999965311 1 1 2234445555444433222110 46899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987655899999999999876 999999999999999988764
No 136
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-43 Score=350.42 Aligned_cols=213 Identities=26% Similarity=0.444 Sum_probs=184.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
+++.+++++|++. ..+++||||+++.||++||.|+|||||||+|++|.+++.|++|.|.+||.|+.+ .|...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence 6889999999763 359999999999999999999999999999999999999999999999999987 56788999999
Q ss_pred EcCCCccccc-cHhhccccCCCC---CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSEH---SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~~---~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
++-+..++.. |+||||.+|+.. ++ .++.+..+.. +++.....+..+||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l-----------~l~~~~~rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL-----------QLLEYLDRRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh-----------ChHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 9987778754 999999876532 22 2333333333 344444445567999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
+++|++++|||||||||..+.+.+++.|.+... +++||+.||.|++++. ||||+++++|+++..|+++++.++.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 999999999999999999999999999998764 8999999999999997 9999999999999999999998653
No 137
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-42 Score=388.33 Aligned_cols=220 Identities=20% Similarity=0.374 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEeCCC---CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC------
Q 001189 742 GSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF------ 812 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~---~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~------ 812 (1128)
..|+++|++|+|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 359999999999642 13699999999999999999999999999999999999999999999999998653
Q ss_pred ----------ChHHhhhceEEEcCCC--ccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhc
Q 001189 813 ----------GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSE 876 (1128)
Q Consensus 813 ----------~~~~~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e 876 (1128)
....+|++|+||||+| .+|..|+++|+.+.. ..+.++.. ++ ..++++.+ |++ ...+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---KL--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---HH--HHHHHHHc--CCChhHhcC
Confidence 3456788999999998 688889999996532 12222221 11 23444443 564 45677
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCC
Q 001189 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSG 954 (1128)
Q Consensus 877 ~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G 954 (1128)
.+.+||||||||++|||||+++|+||||||||++||+.+++.+.+.|++.. +++|||+|||+++++.. ||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 788999999999999999999999999999999999999999999998764 47899999999998865 9999999999
Q ss_pred EEEEecChhHHhhc
Q 001189 955 RVLEYDTPEELLSN 968 (1128)
Q Consensus 955 ~i~~~g~~~~l~~~ 968 (1128)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998764
No 138
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-42 Score=394.03 Aligned_cols=217 Identities=22% Similarity=0.396 Sum_probs=187.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++. ++.|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999422 3699999999999999999999999999999999999999999999999999887764 47899
Q ss_pred EEcCCCccccc-cHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
||||++.+|.. ||++|+.+... .+ .+++.++++..++.++..+.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 99999975321 12 234556666666666555544 5899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+++|+|||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++..++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999988654 7899999999999877 999999999999999999999876644
Q ss_pred ch
Q 001189 972 SF 973 (1128)
Q Consensus 972 ~~ 973 (1128)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 33
No 139
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=374.18 Aligned_cols=215 Identities=29% Similarity=0.453 Sum_probs=185.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++..+|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 3899999999964 36999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEcCCCccccccHhhccccCCCC---CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVLFSGTVRFNLDPFSEH---SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~~~---~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++.+|..|+++|+.+.... ...++.+.++..+ ++ ........+||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVG-----------LNKEYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcC-----------CCHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999988999999753211 1223344444433 32 233455678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 224 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQ 224 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCC
Confidence 99999999999999999999999999865 37899999999999887 99999999999999999999986543
No 140
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1e-41 Score=378.90 Aligned_cols=225 Identities=22% Similarity=0.364 Sum_probs=200.0
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++|++++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|.+.. +++.|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48899999999742 3579999999999999999999999999999999999997 5664321 24469
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 187 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
+|+||+|++|++||++|+......+++++.++++.+++...++.+|+++++.++++|.+||||||||++|||||+++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964334567788899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHhc
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAG 346 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 346 (1128)
+||||||++||+.+.+.+.+.+.. ...++|+|+|||+++++..||+|++|++|++++.|+++++.++...++.++...+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcc
Confidence 999999999999999988876553 3458999999999999988999999999999999999999998777787776544
No 141
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.7e-42 Score=338.58 Aligned_cols=210 Identities=29% Similarity=0.422 Sum_probs=188.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|.+++|.++|... =-.++++|++||++||+||||||||||+++|.||..|.+|+|.|+|+|....+| .++-+++
T Consensus 2 l~L~~V~~~y~~~----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVSM 75 (231)
T ss_pred ccccceEEeeCcc----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChhh
Confidence 5678999999632 235789999999999999999999999999999999999999999999988777 4567999
Q ss_pred EcCCCccccc-cHhhccccCC----CC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS----EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~----~~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
++|+..||.. ||.+|+..+- +. ..+.+..++.++|+..+..++| .+||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence 9999999987 9999997542 22 3456888999999999999998 47999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
+++-+||+||||.|+|||.-+..+...+.+.. ++.|+++|||.++.+.. +||++++++|||.+.|..+++++...
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999999999988865 46899999999999988 99999999999999999999987543
No 142
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.8e-42 Score=389.53 Aligned_cols=212 Identities=30% Similarity=0.466 Sum_probs=181.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++||
T Consensus 7 ~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 7 PIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred eEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999999997654 45788999
Q ss_pred EEcCCCcccc-ccHhhccccCCC---CCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFS-GTVRFNLDPFSE---HSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~-~Tv~~nl~~~~~---~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
|+||++.+|. .|++||+.++.. .+.. ++.++++.++ +.........+||||||||++||||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~la~a 152 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK-----------LENKADAKVGELSGGMKRRLTLARA 152 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchHhcCchhhCCHHHHHHHHHHHH
Confidence 9999999886 599999975322 1222 2223333333 3333333445799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|+++|++|||||||+|||+.+++.+++.|+++. .++|||++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999875 47899999999999987 999999999999999999999765
No 143
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-42 Score=392.49 Aligned_cols=216 Identities=25% Similarity=0.416 Sum_probs=187.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++ .+++|+
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5999999999964 369999999999999999999999999999999999999999999999999987665 357899
Q ss_pred EEcCCCccccc-cHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
||||++.+|.. |+++|+.+... .. ++++.++++..++.++..+. ...||||||||++||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 99999975321 22 23455566666665544433 46799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+.+|++|||||||++||+.++..+++.|+++.+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++..++..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999998754 7899999999999877 999999999999999999999877654
Q ss_pred ch
Q 001189 972 SF 973 (1128)
Q Consensus 972 ~~ 973 (1128)
.|
T Consensus 231 ~~ 232 (351)
T PRK11432 231 RF 232 (351)
T ss_pred hH
Confidence 44
No 144
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-42 Score=392.47 Aligned_cols=216 Identities=29% Similarity=0.470 Sum_probs=184.1
Q ss_pred EEEEEEEEEeCC--CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hh
Q 001189 744 IKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~--~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 818 (1128)
|+++||+++|+. ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999962 1247999999999999999999999999999999999999999999999999998877654 47
Q ss_pred hceEEEcCCCcccc-ccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~-~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
++|+|+||++.+|. .|+++|+.+.. ..+.. ++.+.++.. |++........+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELV-----------GLSDKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 88999999999886 59999997431 12222 233334433 4444444455689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+++|+||||||||++||+.+.+.+++.|+++.+ ++|+|++||+++.+.. ||||++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999887 99999999999999999999986
Q ss_pred cCC
Q 001189 968 NEG 970 (1128)
Q Consensus 968 ~~~ 970 (1128)
.+.
T Consensus 231 ~~~ 233 (343)
T PRK11153 231 HPK 233 (343)
T ss_pred CCC
Confidence 543
No 145
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=8e-42 Score=392.71 Aligned_cols=216 Identities=25% Similarity=0.389 Sum_probs=185.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+||.++...++. ++.++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 3899999999964 3699999999999999999999999999999999999999999999999999877653 67899
Q ss_pred EEcCCCcccc-ccHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~-~Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
||||++.+|. .||++|+.+.. ..+ ++++.++++..+ ++........+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~-----------L~~~~~~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVG-----------LPGSERKYPGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CCchhhCChhhCCHHHHHHHHHHHH
Confidence 9999999996 49999997531 112 223444444444 4444445557899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+.+|++|||||||++||+.+++.+++.|++..+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++..++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999988654 7899999999999877 999999999999999999999987654
Q ss_pred ch
Q 001189 972 SF 973 (1128)
Q Consensus 972 ~~ 973 (1128)
.|
T Consensus 229 ~~ 230 (353)
T TIGR03265 229 PF 230 (353)
T ss_pred HH
Confidence 44
No 146
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=381.05 Aligned_cols=215 Identities=29% Similarity=0.441 Sum_probs=185.9
Q ss_pred cEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 743 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
.|+++||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642 24699999999999999999999999999999999999999999999999999887887888999
Q ss_pred EEEcCCCc--cccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 822 GIIPQSPV--LFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 822 ~~v~Q~~~--lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
+|+||+|. ++..||++|+.+.. ..+. +++.++++.+++.++.++ ...+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKER-----------EPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999983 55679999997532 1222 345556666665544443 3468999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||||++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7899999999999977999999999999999999988754
No 147
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-42 Score=367.64 Aligned_cols=206 Identities=27% Similarity=0.434 Sum_probs=178.2
Q ss_pred cEEEEeEEEEeCCC--CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------
Q 001189 119 AISIRNGYFSWDSK--AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~--~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 181 (1128)
.|+++++++.|+.. +..++|+||||+|++|++.+|||.||+|||||++++.++..|++|.+..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 37899999999853 1246999999999999999999999999999999999999999986532
Q ss_pred ecCcEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 182 IRGTVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 182 ~~~~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
.|++||+++|++.|++ .||.+||.|.-. .+ ..++.+.++..+|.+..+..| .+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhH
Confidence 4567999999999985 899999998632 11 245566677788887776666 5899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|+|||||+.+|+|||.|||||||||++.+.|.+.+.... ..|-|+++|||.++.++. |||+.+|++|+++++|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999998665543 349999999999999986 899999999999999999998
Q ss_pred hhcc
Q 001189 332 SNNG 335 (1128)
Q Consensus 332 ~~~~ 335 (1128)
..++
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 8764
No 148
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.7e-43 Score=349.56 Aligned_cols=223 Identities=28% Similarity=0.466 Sum_probs=189.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 821 (1128)
.+..+|+.++|.. +++++||||+|++||+||+.|||||||||.+.++.|+.+|++|+|.+||.||+.++.+.. |..|
T Consensus 4 ~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 4889999999965 479999999999999999999999999999999999999999999999999999998764 5569
Q ss_pred EEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
||+||+|.+|.+ ||++||...-+....+.+...++..+.+.++.+ .+...-...+.+||||||+|+.|||||..+|+
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 999999999977 999999643222221222222333344445442 45555566778999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
.++||||.+|+||-+-..|++.++.+. .|--|+++-|...+..+ |||.+++.+|+|...|+|+|+.+++
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 999999999999999999999998876 47789999999876555 9999999999999999999999765
No 149
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=372.80 Aligned_cols=217 Identities=24% Similarity=0.421 Sum_probs=187.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
|+++|+++.|+. +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+...+|+.
T Consensus 3 ~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 3 AKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred eeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 789999999964 369999999999999999999999999999999999985 699999999999988877788889
Q ss_pred eEEEcCCCccccccHhhccccCCC---C------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFSE---H------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~~---~------~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
++|+||++.+|..|+++|+.+... . .++++.++++.+++.+.+. ......+.+||||||||++|
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHHHH
Confidence 999999999998999999965311 0 1123445555555533322 22445667899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999999987778999999999999876 9999999999999999999987643
No 150
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=382.43 Aligned_cols=216 Identities=28% Similarity=0.474 Sum_probs=182.5
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC--hHHhh
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r 818 (1128)
|+++||+++|++.. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 88999999996421 36999999999999999999999999999999999999999999999999997643 35678
Q ss_pred hceEEEcCCC--ccccccHhhccccCC---CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 819 KILGIIPQSP--VLFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 819 ~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~----i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
++|+|+||+| .+|..|+++|+.+.. ..++++ +.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 8999999998 567889999997532 123322 33344443332 11334555678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+|||||+.+|++|||||||++||+.+...+++.|+++.+ ++|||+|||+++++.. ||||++|++|++++.|+++++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 7899999999999876 9999999999999999999987
Q ss_pred hc
Q 001189 967 SN 968 (1128)
Q Consensus 967 ~~ 968 (1128)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 53
No 151
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=379.57 Aligned_cols=212 Identities=27% Similarity=0.405 Sum_probs=183.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+++.++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 38999999999633 36999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEcCCC--ccccccHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSP--VLFSGTVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~--~lf~~Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|+||+| .++..|+++|+.+... .. ++++.++++.+++.+...+.| ..||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999998 5778899999975311 12 234555666666655444433 579999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
||+.+|++|||||||++||+.+...+.+.|++.. .++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999999874 47899999999999866 9999999999999999987643
No 152
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-42 Score=365.22 Aligned_cols=217 Identities=28% Similarity=0.439 Sum_probs=191.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE---ecCCCChHHhhh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF---DIAKFGLMDLRK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~---~i~~~~~~~~r~ 819 (1128)
.|+++|+++.|+.. ++++|||++|+.||.+|+.|||||||||||++|+|+..|++|+|.++|. |.++.. .-.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhc
Confidence 37889999999653 7999999999999999999999999999999999999999999999999 776643 3446
Q ss_pred ceEEEcCCCccccc-cHhhccccCCC---------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPFSE---------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~~~---------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
+||+|+|+..||.. ||++|+.|+-+ ..+.++.+.|+.++|..+-++.| .+||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHH
Confidence 79999999999965 99999987531 12455677788888877777776 57999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+|||||.-+|++||||||.++||..-++.+.+-|++... +.|+++||||.+++.. ||||+||++|+|...|+|+|..
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999988653 7999999999999887 9999999999999999999999
Q ss_pred hcCCCchH
Q 001189 967 SNEGSSFS 974 (1128)
Q Consensus 967 ~~~~~~~~ 974 (1128)
..+++.|-
T Consensus 227 ~~P~s~fV 234 (345)
T COG1118 227 DHPASRFV 234 (345)
T ss_pred cCCCccce
Confidence 87766553
No 153
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.6e-41 Score=367.85 Aligned_cols=216 Identities=34% Similarity=0.548 Sum_probs=193.8
Q ss_pred CccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 741 SGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
.+.|+++|++++|+.. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4579999999999642 236999999999999999999999999999999999999999999999999988777777788
Q ss_pred ceEEEcCCCccccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
.++|+||++.+|..|+++|+.+... ....++.+..+..++.++++.++.|+++.+.....+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999999999998999999975322 233445555666778899999988999989998999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEE
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 956 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i 956 (1128)
|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++++..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999987777899999999999988999999999974
No 154
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-41 Score=370.38 Aligned_cols=211 Identities=27% Similarity=0.419 Sum_probs=179.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999876543 3578999
Q ss_pred EcCCCcccc-ccHhhccccCCCC-------CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSEH-------SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~~-------~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
+||+|.+|. .|+++|+.+.... .. +++.++++..+ ++........+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ-----------LDWLADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcC-----------ChhhhhcChhhCCHHHHHHHHH
Confidence 999999886 5999999753211 11 12233334433 4444444556899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999999998653 7899999999999876 999999999999999999998754
Q ss_pred C
Q 001189 969 E 969 (1128)
Q Consensus 969 ~ 969 (1128)
.
T Consensus 228 ~ 228 (239)
T cd03296 228 P 228 (239)
T ss_pred C
Confidence 3
No 155
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.3e-41 Score=381.49 Aligned_cols=213 Identities=33% Similarity=0.569 Sum_probs=187.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.++++|++++|+. ...+|+||||+|++||++|++||||||||||+++|+|+++|++|+|.++|.+...- ....|++||
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 3788999999973 23799999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EEcCCCccccc-cHhhccccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~-------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
|+||+|.++.. |++|||.++.. ..++++.+.++..++.+. .......||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK-----------ANKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchh-----------hCcchhhcCHHHHHHHHHHHH
Confidence 99999998866 99999986532 123466777777666541 123346799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-C-cEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~-~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|+++|++|||||||+|||+.+...+++.|+++.+ + +||+++||.++++.. ||||++|++|+++..|+++++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999775 4 699999999999999 999999999999999999998754
No 156
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1e-41 Score=368.52 Aligned_cols=202 Identities=29% Similarity=0.419 Sum_probs=171.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH---Hhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 820 (1128)
|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964324699999999999999999999999999999999999999999999999998766543 36788
Q ss_pred eEEEcCCCcccc-ccHhhccccCC---CC----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFS-GTVRFNLDPFS---EH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~-~Tv~~nl~~~~---~~----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
++|+||++.+|. .|+++|+.+.. .. .++++.++++..++.+...+ ...+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-----------LPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHH
Confidence 999999999886 49999996421 11 12345556666555544433 3357999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
|||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47899999999999987 999999999975
No 157
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.9e-41 Score=367.42 Aligned_cols=210 Identities=26% Similarity=0.420 Sum_probs=178.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++||+++|+...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 578999999964224699999999999999999999999999999999999999999999999998764 3567788999
Q ss_pred EcCCCccc-cccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLF-SGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf-~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+| ..|+++|+.+.. .... +++.++++..++. ........+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-----------DKANKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----------HHHhChhhhCCHHHHHHHHHHHHH
Confidence 99999988 469999986421 1111 2234444444443 333344467999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987777999999999999977 999999999999999998875
No 158
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.6e-41 Score=390.61 Aligned_cols=217 Identities=24% Similarity=0.393 Sum_probs=186.6
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEECCEecCCCChHHhhh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER--GRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~--G~I~i~g~~i~~~~~~~~r~ 819 (1128)
|.|+++||+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...++ .++
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 4 GGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred eEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 56999999999964 369999999999999999999999999999999999999999 999999999987665 357
Q ss_pred ceEEEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
.|+|++|++.+|.. ||++|+.+.. .... .++.++++..++.++. .....+||||||||++|
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRvaL 148 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA-----------AHLPAQLSGGMQQRIAI 148 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchh-----------hCChhhCCHHHHHHHHH
Confidence 89999999999976 9999997531 1222 2344455555554444 34446899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC---CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK---SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~---~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
||||+.+|++|||||||++||+.++..+++.|+++.+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++..
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999988654 6899999999999877 99999999999999999999987
Q ss_pred cCCCch
Q 001189 968 NEGSSF 973 (1128)
Q Consensus 968 ~~~~~~ 973 (1128)
++...|
T Consensus 229 ~p~~~~ 234 (362)
T TIGR03258 229 APADGF 234 (362)
T ss_pred CcCcHH
Confidence 765444
No 159
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.8e-41 Score=371.69 Aligned_cols=221 Identities=29% Similarity=0.473 Sum_probs=183.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 822 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |+.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999964 369999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EEcCCCccccc-cHhhccccCCCCC-HHHH-------HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSEHS-DADL-------WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~~~-~~~i-------~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|+||++.+|.. |+++|+.+..... ...+ ...-....+.++++.+ |++........+||||||||++|||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHH
Confidence 99999999876 9999986432100 0000 0000111234445443 5666666667789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 9999999999999999999999999999999865 57899999999999977 999999999999999999988653
No 160
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-41 Score=372.22 Aligned_cols=211 Identities=30% Similarity=0.456 Sum_probs=179.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC---hHHhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r~~ 820 (1128)
++++|++++|+.+ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999642 36999999999999999999999999999999999999999999999999998776 4567888
Q ss_pred eEEEcCCCcccc-ccHhhccccCCC------------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001189 821 LGIIPQSPVLFS-GTVRFNLDPFSE------------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 884 (1128)
Q Consensus 821 i~~v~Q~~~lf~-~Tv~~nl~~~~~------------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 884 (1128)
++|+||++.+|. .|+++|+.+... .. ++++.++++.. |++........+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV-----------GLLDKAYQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc-----------CChhhhCCCcccCCHH
Confidence 999999998886 599999964210 01 11223333333 4444455566789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 885 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 885 qrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999865 37899999999999986 99999999999999999
Q ss_pred hhHHh
Q 001189 962 PEELL 966 (1128)
Q Consensus 962 ~~~l~ 966 (1128)
++++.
T Consensus 229 ~~~~~ 233 (241)
T cd03256 229 PAELT 233 (241)
T ss_pred HHHhh
Confidence 98874
No 161
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.2e-41 Score=390.36 Aligned_cols=206 Identities=28% Similarity=0.420 Sum_probs=178.6
Q ss_pred CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh----hhceEEEcCCCccccc
Q 001189 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG 833 (1128)
Q Consensus 758 ~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~ 833 (1128)
+.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...++..+ |+.|+||||++.+|..
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 369999999999999999999999999999999999999999999999999999888877 7789999999999975
Q ss_pred -cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 001189 834 -TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 905 (1128)
Q Consensus 834 -Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLD 905 (1128)
||++|+.+.. ..+ .+++.++++.+++..+ .+....+||||||||++|||||+.+|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999996421 112 2334555555555444 44445689999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchH
Q 001189 906 EATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 974 (1128)
Q Consensus 906 EpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 974 (1128)
|||++||+.+++.+++.|.++. .++|+|+|||+++++.. ||||++|++|++++.|+|++++.++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999998864 37999999999999876 999999999999999999999887654443
No 162
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.5e-41 Score=387.42 Aligned_cols=216 Identities=24% Similarity=0.407 Sum_probs=185.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++ .++.|+
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3889999999964 369999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcCCCccccc-cHhhccccCCC-------CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE-------HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~-------~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
|+||++.+|.. |+++|+.+... .+ ++++.++++..++.++.+ .....||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 99999999975 99999975321 12 223445555555544433 344689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++++.. ||||++|++|++++.|+++++..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998754 6899999999999887 99999999999999999999987
Q ss_pred cCCCch
Q 001189 968 NEGSSF 973 (1128)
Q Consensus 968 ~~~~~~ 973 (1128)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 654333
No 163
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.4e-41 Score=392.43 Aligned_cols=213 Identities=27% Similarity=0.435 Sum_probs=187.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...++++|+
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 3899999999964 47999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEcCCCcc-ccccHhhccccCC-----C------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 823 IIPQSPVL-FSGTVRFNLDPFS-----E------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 823 ~v~Q~~~l-f~~Tv~~nl~~~~-----~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
|+||++.+ |..|+++|+.+.. . ...+.+.++++.+++.++.++ ...+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 99999987 5679999986431 0 112346667777666554433 34679999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||+++|+||||||||++||+.++..+++.|+++. .++|||++||+++.+.. |||+++|++|++++.|++++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999875 47899999999999977 999999999999999999998753
No 164
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-41 Score=377.69 Aligned_cols=215 Identities=28% Similarity=0.453 Sum_probs=186.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|+...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 38999999999643346999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EEcCCC--ccccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~--~lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|+||++ .++..|+++|+.+.. ..+. +++.++++..++.+++.+. ...||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 999998 456679999997531 1122 2345555555555544443 4589999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||+.+|+||||||||++||+.+...+.+.|+++.+ ++|||++||+++.+..||||++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998764 7899999999999988999999999999999999988754
No 165
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.2e-41 Score=371.12 Aligned_cols=217 Identities=29% Similarity=0.493 Sum_probs=183.5
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEecCCC--ChHH
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-----~G~I~i~g~~i~~~--~~~~ 816 (1128)
|+++||+++|+.. ++++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.++|.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999643 6999999999999999999999999999999999999998 99999999998753 3456
Q ss_pred hhhceEEEcCCCccccccHhhccccCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~-~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
.|+.++|+||++.+|..|+++|+.+.. . ... +++.++++..++.+.+. ........+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHH
Confidence 788999999999998899999996421 1 111 23344444444431110 33455567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999877 99999999999999999999876
Q ss_pred cC
Q 001189 968 NE 969 (1128)
Q Consensus 968 ~~ 969 (1128)
..
T Consensus 233 ~~ 234 (247)
T TIGR00972 233 NP 234 (247)
T ss_pred CC
Confidence 44
No 166
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-41 Score=379.67 Aligned_cols=215 Identities=24% Similarity=0.406 Sum_probs=181.3
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC----CChHH
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~----~~~~~ 816 (1128)
|+++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996432 259999999999999999999999999999999999999999999999999863 33456
Q ss_pred hhhceEEEcCCC--ccccccHhhccccCCC---CCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 817 LRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 817 ~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~~---~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
+|+.++|++|+| .+|..|+.+|+.+... .+.. ++.++++.+++. +........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----------~~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA----------DEFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC----------hhhccCCcccCCHHHHH
Confidence 788999999998 6888899999975321 1222 233334443332 12234555789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998865 47899999999999876 999999999999999999998
Q ss_pred hhc
Q 001189 966 LSN 968 (1128)
Q Consensus 966 ~~~ 968 (1128)
..+
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 753
No 167
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-41 Score=365.45 Aligned_cols=202 Identities=27% Similarity=0.430 Sum_probs=171.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred EcCCCcccc-ccHhhccccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~---~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|. .|+++|+.+... ... +++.++++..+ ++........+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVG-----------LEGLLNRYPHELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 999998886 599999964211 111 22334444444 44444444568999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+.+|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++++.. ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999865 37899999999999877 9999999999998765
No 168
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-40 Score=361.33 Aligned_cols=199 Identities=21% Similarity=0.324 Sum_probs=150.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.+-+.||+|.|+.. .|.+++++|-|.--.+|+||||||.|||||+++|.|-++|+.|+.+-+ .|-+||
T Consensus 586 vLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 47789999999765 589999999999999999999999999999999999999999987544 345799
Q ss_pred EEcCCCc-ccc--ccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 823 IIPQSPV-LFS--GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 823 ~v~Q~~~-lf~--~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+.-|... -++ .|-.|.|.-.-....++.+.+|...|+...... -....||||||-|++||-.-++.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHT----------ikikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHT----------IKIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccce----------EeeeecCCcchHHHHHHHHhcCCC
Confidence 9888763 222 265555532112233455555655554332111 112469999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcC-EEEEEeCCEEEEe-cChhHH
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD-RILLLDSGRVLEY-DTPEEL 965 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D-~i~vl~~G~i~~~-g~~~~l 965 (1128)
+||||||||++||.++...+-++|++ ....||+|||+-..+...| ..||+++-.|-+. |..+++
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIne--y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDY 789 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINE--YNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDY 789 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHh--ccCcEEEEecccceeeecCceEEEEccCChhhccccHHHH
Confidence 99999999999999999999999998 4567999999988887633 3556665444443 555444
No 169
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-41 Score=368.31 Aligned_cols=213 Identities=29% Similarity=0.461 Sum_probs=180.6
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hh
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 818 (1128)
|+++|++++|+.. ..++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 126999999999999999999999999999999999999999999999999998765543 47
Q ss_pred hceEEEcCCCcccc-ccHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~-~Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
+.++|+||++.+|. .|+++|+.+.. ... .+++.++++..+ ++........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVG-----------LEDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------ChhhhhcChhhCCHHHHHHHH
Confidence 78999999999987 59999986421 111 123334444444 444444455689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
||||++.+|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998653 7899999999999877 99999999999999999988865
No 170
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4e-41 Score=370.56 Aligned_cols=211 Identities=30% Similarity=0.438 Sum_probs=178.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh---HHhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r~~ 820 (1128)
|+++||+++|+.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 7899999999622 469999999999999999999999999999999999999999999999999877654 346788
Q ss_pred eEEEcCCCcccc-ccHhhccccCCC------------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001189 821 LGIIPQSPVLFS-GTVRFNLDPFSE------------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 884 (1128)
Q Consensus 821 i~~v~Q~~~lf~-~Tv~~nl~~~~~------------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 884 (1128)
++|+||++.+|. .|+++|+.+... .. ++++.++++.. |++........+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV-----------GLADKAYQRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCHH
Confidence 999999998886 599999964210 01 12233333333 4444445566789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 885 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 885 qrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998642 7899999999999876 99999999999999999
Q ss_pred hhHHh
Q 001189 962 PEELL 966 (1128)
Q Consensus 962 ~~~l~ 966 (1128)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 98863
No 171
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-41 Score=371.18 Aligned_cols=218 Identities=24% Similarity=0.394 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 4999999999964 369999999999999999999999999999999999975 689999999999864 3345
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+.. .. . ++++.++++.+++.+.+ ....+....+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHHH
Confidence 6788999999999999889999996421 11 1 23344555555543322 12345556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+.+|+||||||||++||+.+...+.+.|++..+++|||++||+++++.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999976 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
...
T Consensus 237 ~~~ 239 (253)
T PRK14242 237 TRP 239 (253)
T ss_pred cCC
Confidence 643
No 172
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-38 Score=344.52 Aligned_cols=467 Identities=19% Similarity=0.261 Sum_probs=314.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHH
Q 001189 465 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 544 (1128)
Q Consensus 465 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~ 544 (1128)
|.++...-.+.+.+........+...-.+++.++.++++..|+.-+++...++++.++++|+..|.-.+ ..+..+...+
T Consensus 54 f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~-s~lp~~~qa~ 132 (546)
T COG4615 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPELVQAI 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehH-hhhHHHHHHH
Confidence 333334444455556666777888999999999999999999999999999999999999999987322 2234455555
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHH--HH
Q 001189 545 SQLLSTFVLIGIVSTMSLW-AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR--MA 621 (1128)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~--~~ 621 (1128)
...+++....+++++.++. +++.+++.++.-+....+..+.. +...+....+..+++..+.|.+..+....-.+ +.
T Consensus 133 il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~-~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~ 211 (546)
T COG4615 133 ILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHM-AAARETEDKLQNDYQTILEGRKELTLNRERAEYVHN 211 (546)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHh
Confidence 5666666777777765443 33333333322222211111111 11223345577888999999999887654322 22
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 001189 622 DING----KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 697 (1128)
Q Consensus 622 ~~~~----~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 697 (1128)
+.+. ..-+...+..........|..+.+-.+.++.+|+..... ...++ .+.++. ...+.+..++..
T Consensus 212 ~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~----w~st~---~a~tiv---lvlLflr~pL~s 281 (546)
T COG4615 212 NLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG----WASTN---VAATIV---LVLLFLRTPLLS 281 (546)
T ss_pred hhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cchhh---HHHHHH---HHHHHHhhHHHH
Confidence 2211 111122222333334455666655444444433332211 11111 111111 112233444445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEE
Q 001189 698 VLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIV 777 (1128)
Q Consensus 698 ~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~iv 777 (1128)
++......-.+.+|.+++.++...|.... -....+.+.|. .|+++||.|.|.+.. --+..||++|++||+|-|+
T Consensus 282 ~vgilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~~---~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFli 355 (546)
T COG4615 282 AVGILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDWK---TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLI 355 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCccc---ceeeeeeeeccCccc-ceecceeeEEecCcEEEEE
Confidence 55555555667788888887755332211 11222333453 599999999997653 4588999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHh
Q 001189 778 GRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 857 (1128)
Q Consensus 778 G~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~ 857 (1128)
|.|||||||++++|+|++.|++|+|++||.+++.-+++++|+-++-|+-|.+||+.++- +-+..+++.+...|++.
T Consensus 356 G~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~e~~as~q~i~~~LqrL 431 (546)
T COG4615 356 GGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----PEGKASPQLIEKWLQRL 431 (546)
T ss_pred CCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----CccCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986542 22224566676666665
Q ss_pred cHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEe
Q 001189 858 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLII 935 (1128)
Q Consensus 858 ~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~v 935 (1128)
.+.....-. +|- .. ...||-|||+|+++--|++.+.+|+++||=.+.-||.-++...+.+-... .|+||+.|
T Consensus 432 el~~ktsl~-d~~---fs--~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aI 505 (546)
T COG4615 432 ELAHKTSLN-DGR---FS--NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAI 505 (546)
T ss_pred HHhhhhccc-CCc---cc--ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEE
Confidence 544332211 110 00 13599999999999999999999999999999999999999988765533 58999999
Q ss_pred ecCchhhhhcCEEEEEeCCEEEEe
Q 001189 936 AHRLNTIIDCDRILLLDSGRVLEY 959 (1128)
Q Consensus 936 tH~l~~~~~~D~i~vl~~G~i~~~ 959 (1128)
|||-.....|||++.|++|+++|.
T Consensus 506 sHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 506 SHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred ecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999986
No 173
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-41 Score=369.42 Aligned_cols=218 Identities=27% Similarity=0.462 Sum_probs=183.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
++++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 369999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCCcccc-ccHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcch--hhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDA--QVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt--~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+||++.+|. .|+++|+.+... ....+. ...+.++++.+ |+.. .......+||||||||++||||+++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAA 152 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhc
Confidence 999999886 599999964311 111111 11223344443 4442 4455667899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 227 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCC
Confidence 9999999999999999999999999998753 7899999999998876 9999999999999999999887543
No 174
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.2e-41 Score=387.74 Aligned_cols=216 Identities=25% Similarity=0.418 Sum_probs=188.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.|+
T Consensus 14 ~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999877654 57899
Q ss_pred EEcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
|+||++.+|.. ||++|+.+.. ... .+++.++++..++.++.++.| .+||||||||++||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999976 9999997532 112 234555666666665555544 5799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||||++|++|+|++.|+|+++..++..
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~ 238 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 238 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999998754 7899999999999876 999999999999999999999887654
Q ss_pred ch
Q 001189 972 SF 973 (1128)
Q Consensus 972 ~~ 973 (1128)
.|
T Consensus 239 ~~ 240 (375)
T PRK09452 239 LF 240 (375)
T ss_pred HH
Confidence 43
No 175
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.8e-41 Score=365.61 Aligned_cols=216 Identities=29% Similarity=0.452 Sum_probs=179.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 822 (1128)
|+++||+++|+. .++++|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+.... |+.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 369999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EEcCCCccccc-cHhhccccCCCCC-HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~~~-~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
|+||++.+|.. |+++|+.+..... ..+..+ .+.+.++.++ +++........+||||||||++||||++.+|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999998876 9999997532211 111111 1122222221 23344455567899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+|||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 999999999999999999999999865 47899999999999877 99999999999999999888753
No 176
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.2e-41 Score=385.86 Aligned_cols=216 Identities=27% Similarity=0.460 Sum_probs=181.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.||
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 59999999999643 6999999999999999999999999999999999999999999999999987644 46788999
Q ss_pred EEcCCCcccc-ccHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~lf~-~Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++.++. .|+++|+.++.. ....+..+. +.++++. .|++........+||||||||++|||||+++
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~--~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEF--ARLESKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCCchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998875 599999975321 122221111 1222322 2343334444568999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|++|||||||+|||+.+++.+++.|+++. .++|||++||+++++.. ||||++|++|++++.|+++++.++
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999875 47999999999999987 999999999999999999999764
No 177
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=370.44 Aligned_cols=220 Identities=25% Similarity=0.397 Sum_probs=186.6
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CC
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FG 813 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~ 813 (1128)
.+.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 356999999999964 369999999999999999999999999999999999986 589999999999853 34
Q ss_pred hHHhhhceEEEcCCCccccccHhhccccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001189 814 LMDLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 885 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~----~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq 885 (1128)
...+|++++|+||++.+|..|+++|+.+.. ..+. +++.++++.+++.+. +....+....+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE-------VKDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh-------hHHHHhcCCCCCCHHH
Confidence 567788999999999999899999997431 1222 234455555544221 2234556667899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~ 964 (1128)
|||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988667899999999999876 99999999999999999999
Q ss_pred HhhcC
Q 001189 965 LLSNE 969 (1128)
Q Consensus 965 l~~~~ 969 (1128)
+....
T Consensus 242 ~~~~~ 246 (260)
T PRK10744 242 IFTKP 246 (260)
T ss_pred HHhCC
Confidence 87644
No 178
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-41 Score=370.06 Aligned_cols=219 Identities=25% Similarity=0.405 Sum_probs=185.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 5999999999964 3699999999999999999999999999999999999997 48999999998853 2345
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~----~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+... .. ++.+.++++.+++.+.+ .........+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-------KDKLNTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-------HHHHhCCcccCCHHHHH
Confidence 67889999999999988899999974311 11 23345555555543222 12234456789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++++.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667999999999999877 9999999999999999999998
Q ss_pred hcCC
Q 001189 967 SNEG 970 (1128)
Q Consensus 967 ~~~~ 970 (1128)
+++.
T Consensus 238 ~~~~ 241 (254)
T PRK14273 238 FNPK 241 (254)
T ss_pred hCCC
Confidence 6543
No 179
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-41 Score=389.51 Aligned_cols=215 Identities=22% Similarity=0.345 Sum_probs=184.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .++.|+
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 3899999999964 369999999999999999999999999999999999999999999999999987665 356799
Q ss_pred EEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
|+||++.+|.. |+++|+.+.. .... +++.++++..++.++. .....+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHH
Confidence 99999999965 9999997532 1121 2345555555554433 33446899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++...+..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999988653 7899999999999877 999999999999999999999876543
Q ss_pred c
Q 001189 972 S 972 (1128)
Q Consensus 972 ~ 972 (1128)
.
T Consensus 228 ~ 228 (369)
T PRK11000 228 R 228 (369)
T ss_pred H
Confidence 3
No 180
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-41 Score=378.21 Aligned_cols=218 Identities=22% Similarity=0.407 Sum_probs=183.6
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHH
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 816 (1128)
|+++||+++|++.. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999996422 3699999999999999999999999999999999999999999999999998653 2356
Q ss_pred hhhceEEEcCCC--ccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHHHHHH
Q 001189 817 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 817 ~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~LSgGqrqrl~ 890 (1128)
+|++|+|+||+| .+|..|+.+|+.+.. ..+..+..+ .+.++++. .|+++ .......+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMD--LGFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 578889999997531 122222221 12333443 36653 345667899999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999864 37999999999999876 99999999999999999999875
Q ss_pred c
Q 001189 968 N 968 (1128)
Q Consensus 968 ~ 968 (1128)
+
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
No 181
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.1e-39 Score=405.11 Aligned_cols=258 Identities=21% Similarity=0.258 Sum_probs=215.4
Q ss_pred CCCCHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-----CC-C-------------
Q 001189 55 GDLTPARAFT-S---LSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL-----PN-P------------- 111 (1128)
Q Consensus 55 ~~lt~~~~f~-~---l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~-----~~-~------------- 111 (1128)
|.+|.+..+. + ..++..+..|+..+...+..+.++.++.+|+.++++.+++... +. +
T Consensus 358 g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (659)
T TIGR00954 358 LEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSN 437 (659)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 6788886554 2 3346677899999999999999999999999999976432110 00 0
Q ss_pred ------CCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-ecC
Q 001189 112 ------PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-IRG 184 (1128)
Q Consensus 112 ------~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-~~~ 184 (1128)
........|+++|++|+|++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.... .+.
T Consensus 438 ~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~ 515 (659)
T TIGR00954 438 LVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKG 515 (659)
T ss_pred ccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCC
Confidence 00012235999999999973 357999999999999999999999999999999999999998775432 245
Q ss_pred cEEEEecCCCCCcccHHHHHhcCC--------CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIFNATVRDNILFGS--------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~~Tv~eni~~g~--------~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.++||||+|+++++|++|||.++. ..+++++.++++.+++.+.++. |.|++|..+ .+.+||||||||++|
T Consensus 516 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~i 593 (659)
T TIGR00954 516 KLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAM 593 (659)
T ss_pred cEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHH
Confidence 799999999999999999999863 2346778889999999988877 889999876 577999999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeC
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 319 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 319 (1128)
||||+++|+++|||||||+||+++++.+.+.+.+ .|+|+|+||||++.++.||+|++|+.
T Consensus 594 ARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 594 ARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999876533 37999999999999999999999973
No 182
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-41 Score=363.07 Aligned_cols=208 Identities=28% Similarity=0.458 Sum_probs=177.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 578999999964 3699999999999999999999999999999999999999999999999988653 3566788999
Q ss_pred EcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.++.. |+++|+.+.. ... ++++.++++..++.+.. .....+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA-----------DRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 9999988875 9999986421 111 23345555555554433 333457999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999988653 6899999999999887 999999999999999988764
No 183
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-41 Score=375.50 Aligned_cols=214 Identities=30% Similarity=0.495 Sum_probs=182.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHhhhc
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 820 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 820 (1128)
.|+++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999632 46999999999999999999999999999999999999999999999999984 3345567889
Q ss_pred eEEEcCCC--ccccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
++|+||+| .+|..|+++|+.+.. ..+. +.+.++++..++ .........+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI-----------EHLKDKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhhCCcccCCHHHHHHHHH
Confidence 99999998 567889999996421 1222 223444444444 334455567899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998753 7899999999999986 999999999999999999998753
No 184
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-41 Score=377.20 Aligned_cols=214 Identities=28% Similarity=0.410 Sum_probs=180.6
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC----CChHH
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~----~~~~~ 816 (1128)
|+++|++++|++.. .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999996421 369999999999999999999999999999999999999999999999999863 34456
Q ss_pred hhhceEEEcCCC--ccccccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHH
Q 001189 817 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQR 886 (1128)
Q Consensus 817 ~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqr 886 (1128)
.|+.|+|+||+| .+|..|+++|+.+.. ..+.. .+.++++.+ |++ .........||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~~LSgGq~ 151 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELV-----------GLPEELLARSPFELSGGQM 151 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CCChhhhhCCcccCCHHHH
Confidence 788899999998 578789999996431 11222 233334443 343 223445578999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChh
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 963 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~ 963 (1128)
||++|||||+.+|+||||||||++||+.+...+.+.|+++.+ +.|||+|||+++.+.. ||||++|++|++++.|+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998753 7899999999999876 9999999999999999999
Q ss_pred HHhhc
Q 001189 964 ELLSN 968 (1128)
Q Consensus 964 ~l~~~ 968 (1128)
++.+.
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98753
No 185
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=370.11 Aligned_cols=220 Identities=23% Similarity=0.432 Sum_probs=185.9
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CC
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FG 813 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~ 813 (1128)
...|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 11 ~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 346999999999964 369999999999999999999999999999999999987 689999999999863 45
Q ss_pred hHHhhhceEEEcCCCccccccHhhccccCCC---CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 814 LMDLRKILGIIPQSPVLFSGTVRFNLDPFSE---HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
+..+|+.++|+||++.+|..|+++|+.+... .. ++++.++++.+++.. +++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHH
Confidence 6677889999999999998899999975321 11 233444455544322 2233445556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeC-----------CE
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS-----------GR 955 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~-----------G~ 955 (1128)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988667899999999999977 999999996 67
Q ss_pred EEEecChhHHhhcC
Q 001189 956 VLEYDTPEELLSNE 969 (1128)
Q Consensus 956 i~~~g~~~~l~~~~ 969 (1128)
+++.|+++++...+
T Consensus 242 ~~~~~~~~~~~~~~ 255 (269)
T PRK14259 242 LVEFNETKKIFNSP 255 (269)
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999997643
No 186
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=368.29 Aligned_cols=218 Identities=28% Similarity=0.444 Sum_probs=184.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCCChHHh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~~~~~~ 817 (1128)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 3899999999964 3699999999999999999999999999999999999974 69999999999988887788
Q ss_pred hhceEEEcCCCccc-cccHhhccccCCC-----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 818 RKILGIIPQSPVLF-SGTVRFNLDPFSE-----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf-~~Tv~~nl~~~~~-----~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
|+.|+|+||++.+| ..|+++|+.+... .. ++++.++++.+++.+.+ +........+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHHH
Confidence 89999999999765 5699999964211 01 22344555555543221 12234445689999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999987678999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
+.+
T Consensus 234 ~~~ 236 (250)
T PRK14247 234 TNP 236 (250)
T ss_pred cCC
Confidence 654
No 187
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=370.47 Aligned_cols=220 Identities=25% Similarity=0.425 Sum_probs=185.9
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CC
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FG 813 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~ 813 (1128)
.+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 356999999999964 3699999999999999999999999999999999999975 89999999999864 34
Q ss_pred hHHhhhceEEEcCCCccccccHhhccccCC---CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001189 814 LMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 884 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~--~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 884 (1128)
...+|+.++|+||++.+|..|+.+|+.+.. .. . ++++.++++.+++.+.+. ........+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 556788999999999999889999996421 11 1 223445555555433221 2334556789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChh
Q 001189 885 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 963 (1128)
Q Consensus 885 qrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~ 963 (1128)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999987667899999999999977 9999999999999999999
Q ss_pred HHhhcC
Q 001189 964 ELLSNE 969 (1128)
Q Consensus 964 ~l~~~~ 969 (1128)
++....
T Consensus 248 ~~~~~~ 253 (267)
T PRK14235 248 KMFTNP 253 (267)
T ss_pred HHHhCC
Confidence 987543
No 188
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=8.3e-41 Score=378.52 Aligned_cols=215 Identities=24% Similarity=0.406 Sum_probs=184.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
++++|++++|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999876 44577889999
Q ss_pred EcCCCccccc-cHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||++.+|.. |+++||.++.. ...++..+ .+.+.++.+ |++........+||||||||++|||||+++|
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999876 99999974321 12111111 122333332 5555555666789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
++|||||||+|||+.+.+.+++.|+++.+++|||++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999998778999999999999988 999999999999999999998764
No 189
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-41 Score=377.67 Aligned_cols=215 Identities=21% Similarity=0.335 Sum_probs=179.9
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC---------
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--------- 811 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~--------- 811 (1128)
|+++||+++|+... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999996432 259999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHhhhceEEEcCCC--ccccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHcc
Q 001189 812 ---------------FGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNS 867 (1128)
Q Consensus 812 ---------------~~~~~~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp 867 (1128)
.+...+|+.|||+||+| .+|..||++|+.+.. .... +++.++++.+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------ 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE------ 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh------
Confidence 13456788999999987 578789999997532 1222 22344444444421
Q ss_pred CCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-c
Q 001189 868 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-C 945 (1128)
Q Consensus 868 ~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~ 945 (1128)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+.. |
T Consensus 157 ----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 157 ----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 23445557899999999999999999999999999999999999999999998864 47999999999999876 9
Q ss_pred CEEEEEeCCEEEEecChhHHhhc
Q 001189 946 DRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 946 D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||++|++|++++.|+++++.++
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998754
No 190
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-41 Score=354.27 Aligned_cols=191 Identities=29% Similarity=0.427 Sum_probs=166.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee-------cCcEEEEec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------RGTVAYVPQ 191 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~-------~~~i~~v~Q 191 (1128)
.+.+++++++|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|.+..- ...++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5889999999974 579999999999999999999999999999999999999998764331 235999999
Q ss_pred CCCCCc-ccHHHHHhcCCCC-------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 192 VSWIFN-ATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 192 ~~~l~~-~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
++.||. .||+|||.|+... ..++..+.++..+|..+-+..|. +|||||||||||||||+.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHHHhcC
Confidence 999885 8999999998543 13467778899999988888884 8999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeC--CeEe
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHE--GMVK 323 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~--G~i~ 323 (1128)
|+||||||||+|||+.|+..+.+.+.+.+. .++|+++||||.++.- .+|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999988877654 4899999999998854 5899999998 4443
No 191
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-41 Score=351.10 Aligned_cols=203 Identities=28% Similarity=0.444 Sum_probs=176.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++|+|+.|. ++.+++|+||+|++|++++++|||||||||+|++|.++++|++|.+.. +|.+|
T Consensus 1 MI~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 378999999997 468999999999999999999999999999999999999999986432 56789
Q ss_pred EEEecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHhCcHH--HHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 187 AYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQH--DLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 187 ~~v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~--~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
|||-|+.-|| +.||.|||.+-. .++. ++..+.++..+|+. ..++.| ..|||||+|||.+
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 9999999998 789999998642 2343 45566777788864 566666 4899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccc-hhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|+|+|+||||+||||-++..+-+.++.... -|+|+|+||||+++ ++.+|||.+|++|+++..+++++++.+
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999887665443 48999999999987 566899999999999999999999987
Q ss_pred c
Q 001189 335 G 335 (1128)
Q Consensus 335 ~ 335 (1128)
+
T Consensus 227 P 227 (309)
T COG1125 227 P 227 (309)
T ss_pred c
Confidence 4
No 192
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=4.7e-41 Score=363.83 Aligned_cols=206 Identities=28% Similarity=0.407 Sum_probs=170.6
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH----h
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----L 817 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~----~ 817 (1128)
|+++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 36999999999999999999999999999999999999999999999999998766432 3
Q ss_pred hhceEEEcCCCccccc-cHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 818 RKILGIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
++.++|+||++.+|.. |+++|+.+... ....+. ...+.+.++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5689999999998876 99999975321 111111 11122333332 4555555556789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEE
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 956 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i 956 (1128)
||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998754 7899999999999878999999999974
No 193
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=8.7e-41 Score=378.92 Aligned_cols=216 Identities=29% Similarity=0.440 Sum_probs=180.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999998653 356788999
Q ss_pred EEcCCCcccc-ccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~lf~-~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++.++. .|+++|+.++. ..+..+..+. +.+.++. .|+.........+||||||||++|||||+++
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~--~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEF--ARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--CCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 59999996421 1222222111 1122222 2343334444567999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|++|||||||++||+.+.+.+++.|++.. +++|||++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999864 47899999999999987 999999999999999999998754
No 194
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-40 Score=372.87 Aligned_cols=213 Identities=25% Similarity=0.438 Sum_probs=183.5
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
++++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999633 359999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EcCCCc--cccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 824 IPQSPV--LFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 824 v~Q~~~--lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
+||+|. +|..|+++|+.+.. ..+. +.+.++++.+++.+.+ ......||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR-----------DRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHHHHHHHH
Confidence 999983 67789999996421 1222 2344555555554443 33346899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++++.. ||||++|++|++++.|+++++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999998653 7899999999999976 999999999999999999999753
No 195
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=368.59 Aligned_cols=218 Identities=28% Similarity=0.417 Sum_probs=183.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecC--CCChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA--KFGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~--~~~~~ 815 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 3899999999964 3699999999999999999999999999999999999987 4999999999987 44555
Q ss_pred HhhhceEEEcCCCccccc-cHhhccccCC---CC--CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001189 816 DLRKILGIIPQSPVLFSG-TVRFNLDPFS---EH--SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 885 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~--~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq 885 (1128)
.+|++++|+||++.+|.. |+++|+.+.. .. .. +++.++++..++.+.+ .........+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHHH
Confidence 678899999999999976 9999996421 10 11 2334444444432211 123345567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~ 964 (1128)
|||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667999999999999877 99999999999999999999
Q ss_pred HhhcC
Q 001189 965 LLSNE 969 (1128)
Q Consensus 965 l~~~~ 969 (1128)
+....
T Consensus 235 ~~~~~ 239 (253)
T PRK14267 235 VFENP 239 (253)
T ss_pred HHhCC
Confidence 87543
No 196
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-41 Score=364.99 Aligned_cols=208 Identities=26% Similarity=0.401 Sum_probs=176.1
Q ss_pred cEEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---h
Q 001189 743 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 817 (1128)
.++++||+++|+.+. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996432 36999999999999999999999999999999999999999999999999998877654 3
Q ss_pred h-hceEEEcCCCccccc-cHhhccccC---CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 818 R-KILGIIPQSPVLFSG-TVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 818 r-~~i~~v~Q~~~lf~~-Tv~~nl~~~---~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
| +.++|+||++.+|.. |+++|+.+. ..... +++.++++.. |++........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV-----------GLEHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHH
Confidence 3 679999999998875 999998642 11111 2233344443 44444555567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecC
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~ 961 (1128)
++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++++..+|++++|++|++++.|.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999864 4789999999999999889999999999998765
No 197
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7.4e-41 Score=358.68 Aligned_cols=198 Identities=27% Similarity=0.458 Sum_probs=169.8
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++|++++|+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 368999999642 369999999999999999999999999999999999999999999999998854 4567789999
Q ss_pred cCCC--ccccccHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 825 PQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 825 ~Q~~--~lf~~Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
||+| .+|..|+++|+.+... ...+++.++++..++.++..+. ...||||||||++|||||+.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERH-----------PLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCC-----------chhCCHHHHHHHHHHHHHHhCC
Confidence 9998 3667899999975321 1234566667776665544333 3579999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEE
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 957 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~ 957 (1128)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999864 57899999999999987 9999999999975
No 198
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=9.8e-41 Score=358.63 Aligned_cols=202 Identities=27% Similarity=0.435 Sum_probs=175.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+|+.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999954 3799999999999999999999999999999999999999999999999988654 456788999
Q ss_pred EcCCCcccc-ccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||++.+|. .|+++|+.++. ...++++.++++..++.+.+.+ ....||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998874 69999996432 1234556667777666554433 34579999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999865 47899999999999977 9999999999998765
No 199
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-40 Score=355.16 Aligned_cols=203 Identities=31% Similarity=0.518 Sum_probs=173.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee---------cCcEEE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------RGTVAY 188 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------~~~i~~ 188 (1128)
+.|+++|++|+|.+ . ++|+||||++++|++++|+||||||||||+|+|+|+++|.+|.+... +.+|||
T Consensus 3 ~~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 36999999999974 2 69999999999999999999999999999999999999999876532 146999
Q ss_pred EecCC---CCCcccHHHHHhcCCCC-----------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 189 VPQVS---WIFNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 189 v~Q~~---~l~~~Tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
|||.. |-|..||+|-+.+|... |.+++.++++..++.+..+. ....|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHHH
Confidence 99964 56899999999988432 24778889999998865543 2247999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
.|||||+++|++|+|||||+++|+.++..+++.+.....+|+||++||||++.+. .+|+|+.|+ +++.+.|++++..+
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 9999999999999999999999999999999865555556999999999999876 589999995 56788999998876
Q ss_pred cc
Q 001189 334 NG 335 (1128)
Q Consensus 334 ~~ 335 (1128)
..
T Consensus 228 ~~ 229 (254)
T COG1121 228 EE 229 (254)
T ss_pred HH
Confidence 54
No 200
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-41 Score=373.23 Aligned_cols=213 Identities=30% Similarity=0.397 Sum_probs=179.9
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh----hhc
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKI 820 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~----r~~ 820 (1128)
.++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 56788888864 369999999999999999999999999999999999999999999999999987765443 457
Q ss_pred eEEEcCCCcccc-ccHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~-~Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
++|+||++.+|. .|+++|+.+.. ... ++++.++++..++.+.+. ....+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-----------KYPDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 999999999885 59999996421 111 223445555555544443 33457999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
|||+++|+||||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++++..
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998864 37899999999999876 9999999999999999999998654
Q ss_pred C
Q 001189 970 G 970 (1128)
Q Consensus 970 ~ 970 (1128)
.
T Consensus 253 ~ 253 (269)
T cd03294 253 A 253 (269)
T ss_pred C
Confidence 3
No 201
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.7e-40 Score=378.94 Aligned_cols=223 Identities=22% Similarity=0.376 Sum_probs=185.3
Q ss_pred cEEEEEEEEEeCCC-----------CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC
Q 001189 743 SIKFEDVVLRYRPE-----------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 811 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~-----------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~ 811 (1128)
.|+++|++++|+.. ...+++||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999631 2369999999999999999999999999999999999999999999999999988
Q ss_pred CChHH---hhhceEEEcCCC--cccc-ccHhhcccc----CC-CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhc
Q 001189 812 FGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDP----FS-EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSE 876 (1128)
Q Consensus 812 ~~~~~---~r~~i~~v~Q~~--~lf~-~Tv~~nl~~----~~-~~~~~~----i~~~l~~~~l~~~i~~lp~Gldt~v~e 876 (1128)
++... +|++|+||||+| .++. .||.+|+.. +. ..+.++ +.++++.+++. +.....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~----------~~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL----------PNLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHhcC
Confidence 87544 577899999998 4664 599999853 11 123222 33344444441 122344
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeC
Q 001189 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDS 953 (1128)
Q Consensus 877 ~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~ 953 (1128)
...+||||||||++|||||+.+|++||+||||++||+.++..|.+.|+++.+ +.|+|+|||+++.+.. ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4568999999999999999999999999999999999999999999998653 7899999999999987 999999999
Q ss_pred CEEEEecChhHHhhcCCCchHH
Q 001189 954 GRVLEYDTPEELLSNEGSSFSK 975 (1128)
Q Consensus 954 G~i~~~g~~~~l~~~~~~~~~~ 975 (1128)
|+|++.|+++++.++....|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999998765444543
No 202
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.1e-40 Score=364.59 Aligned_cols=215 Identities=29% Similarity=0.451 Sum_probs=181.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 822 (1128)
|+++||+++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |+.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999987766553 56799
Q ss_pred EEcCCCccccc-cHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++.+|.. |+++|+.+.. .....+.. ..+.++++.+ |++........+||||||||++||||++.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999886 9999996421 11111111 1223344443 555555666678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999998865 47899999999998877 99999999999999999988764
No 203
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-40 Score=370.15 Aligned_cols=215 Identities=27% Similarity=0.451 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 48999999999643347999999999999999999999999999999999999999999999999998777778889999
Q ss_pred EEcCCC--ccccccHhhccccCC---CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSP--VLFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~----i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|+||+| .++..|+++|+.+.. ..+.++ +.++++..++ +........+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGM-----------EDYLDKEPQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----------HHHhhCCcccCCHHHHHHHHHHH
Confidence 999998 345679999997521 122222 3333444444 44444555789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998653 4899999999999878999999999999999999988653
No 204
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-40 Score=343.92 Aligned_cols=220 Identities=27% Similarity=0.444 Sum_probs=189.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 821 (1128)
.++++|++..|+.. ++|++|||++++||+++|+||||+|||||+++|+|+.+|.+|+|.++|.||+..+++.. |..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 37899999999763 79999999999999999999999999999999999999999999999999999998875 6679
Q ss_pred EEEcCCCccccc-cHhhccccCCCC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~~-~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||||...+|.. ||.|||...... .+.+- ....+++..+-+| -|.......+.+|||||||.|+|||||+.+|
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 999999999965 999999753211 11000 0111333444455 3666677788899999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
++|+|||||.||-|.-.+.|.+.|+++.+ +.||++|-++.....+ +||.+||++|+|+..|+.+||.+++
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999874 5699999999999877 9999999999999999999998764
No 205
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-41 Score=359.78 Aligned_cols=202 Identities=27% Similarity=0.447 Sum_probs=174.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++++|+||+|++| ++||+||||||||||+++|.|+++|++|+|.++|.++...+ ..+|+.++|
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 578999999964 36999999999999 99999999999999999999999999999999999987766 677889999
Q ss_pred EcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|.. |+++|+.+.. ... .+++.++++..++.+.. .....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-----------KKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-----------hCchhhCCHHHHHHHHHHHHH
Confidence 9999998876 9999986421 111 23345555555554433 233457999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987767999999999999976 9999999999998765
No 206
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-40 Score=371.00 Aligned_cols=213 Identities=29% Similarity=0.510 Sum_probs=181.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC-hHHhhhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~r~~i~ 822 (1128)
|+++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999533 36999999999999999999999999999999999999999999999999997765 356788899
Q ss_pred EEcCCCc--cccccHhhccccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSPV--LFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~~--lf~~Tv~~nl~~~~~---~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|+||+|. ++..|+++|+.+... .+. +.+.++++.. |++.........||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEI-----------GLEKYRHRSPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC-----------CCHHHhcCCcccCCHHHHHHHHHHH
Confidence 9999985 566799999975321 121 2233334443 4444445555789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||+.+|+||||||||++||+.+...+++.|+++. +++|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998865 47899999999999977999999999999999999998653
No 207
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-40 Score=365.90 Aligned_cols=220 Identities=21% Similarity=0.367 Sum_probs=183.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 822 (1128)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |+.++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999964 369999999999999999999999999999999999999999999999999987776544 45799
Q ss_pred EEcCCCccccc-cHhhccccCCCCCHH---H---HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSEHSDA---D---LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~~~~~---~---i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
|+||++.+|.+ |+++|+.+....... . .........+.++++.+ |++........+||||||||++||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999986 999999753210000 0 00000111233344442 555555666678999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999999999987777999999999999987 99999999999999999998864
No 208
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=9.9e-41 Score=361.29 Aligned_cols=205 Identities=31% Similarity=0.512 Sum_probs=174.2
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|+++||+++|+... +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999996431 169999999999999999999999999999999999999999999999999875 445678899
Q ss_pred EEEcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|+||++.+|.. |+++|+.+.. ... .+++.++++..+ ++........+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG-----------MEELLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CHHHHhhhhhhcCHHHHHHHHHHH
Confidence 999999999885 9999986421 111 223344444444 444444555789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
|++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++++.. ||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999864 47899999999999877 9999999999998764
No 209
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-40 Score=355.06 Aligned_cols=199 Identities=28% Similarity=0.423 Sum_probs=180.9
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997542 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
|+|+||+|.+|+.|+++|+.+.....+++..++++.+++.+++..+|.|+++.++....+||+|||||++||||++.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998755555666778888889999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHH-HHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCE
Q 001189 901 ILVLDEATAAVDVRTDALIQK-TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 955 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~-~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~G~ 955 (1128)
++||||||++||+.+.+.+.+ .+++.. +++|||++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999988877 566553 4689999999999998899999999985
No 210
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-40 Score=370.38 Aligned_cols=212 Identities=26% Similarity=0.392 Sum_probs=183.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 4999999999964 36999999999999999999999999999999999999999999999999998888788888999
Q ss_pred EEcCCCccccc-cHhhccccCCC--------C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE--------H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~--------~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
|+||++.++.. |+.+|+.+... . .++++.++++.+++.+.+.+ ...+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-----------LVDSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCCHHHHHHHH
Confidence 99999877655 99999974210 0 12345555666555444333 33579999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|||++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999999864 37899999999999976 99999999999999999988764
No 211
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-40 Score=385.31 Aligned_cols=220 Identities=29% Similarity=0.416 Sum_probs=183.9
Q ss_pred cEEEEEEEEEeCCCC----------------------CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 001189 743 SIKFEDVVLRYRPEL----------------------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 800 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~----------------------~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G 800 (1128)
.|+++||++.|+++. ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 377777777776531 1379999999999999999999999999999999999999999
Q ss_pred eEEECCEecCCCChHHh----hhceEEEcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccC
Q 001189 801 RILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSL 868 (1128)
Q Consensus 801 ~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~ 868 (1128)
+|.++|.++...+...+ |++++|+||++.+|.. |+++|+.+.. ... ++++.++++.+++.++..
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~---- 159 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH---- 159 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh----
Confidence 99999999988776554 3579999999999965 9999997431 112 233445555555544433
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-c
Q 001189 869 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-C 945 (1128)
Q Consensus 869 Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~ 945 (1128)
....+||||||||++|||||+.+|+||||||||++||+.+++.+++.|+++. .++|||+|||+++++.. |
T Consensus 160 -------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~ 232 (400)
T PRK10070 160 -------SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG 232 (400)
T ss_pred -------cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhC
Confidence 3446899999999999999999999999999999999999999999998864 37899999999999876 9
Q ss_pred CEEEEEeCCEEEEecChhHHhhcCCCch
Q 001189 946 DRILLLDSGRVLEYDTPEELLSNEGSSF 973 (1128)
Q Consensus 946 D~i~vl~~G~i~~~g~~~~l~~~~~~~~ 973 (1128)
|+|++|++|++++.|++++++..+...|
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 9999999999999999999987654433
No 212
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.7e-40 Score=363.67 Aligned_cols=215 Identities=29% Similarity=0.452 Sum_probs=182.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 789999999964 3699999999999999999999999999999999999999999999999998776553 4458999
Q ss_pred EcCCCccc-cccHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLF-SGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf-~~Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||++.++ ..|+++|+.+... ....+.. ..+.++++. .|++........+||||||||++||||++++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLAR--LGLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999875 5699999965321 1111111 112334444 25655566667789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
+||||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999875 37899999999999988999999999999999999988764
No 213
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=372.36 Aligned_cols=216 Identities=27% Similarity=0.433 Sum_probs=185.4
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEecCCCChHHhh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---GRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~---G~I~i~g~~i~~~~~~~~r 818 (1128)
+.|+++|++++|++...++++|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 3599999999996433469999999999999999999999999999999999999998 8999999999877777788
Q ss_pred hceEEEcCCCc--cccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 819 KILGIIPQSPV--LFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 819 ~~i~~v~Q~~~--lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
++++|+||+|. ++..|+.+|+.+.. ..+. +++.++++.+++.++. .....+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYI-----------DSEPANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHHH
Confidence 89999999983 56779999997431 1222 2344555555554443 334468999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+..|||+++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998753 789999999999997799999999999999999999875
Q ss_pred c
Q 001189 968 N 968 (1128)
Q Consensus 968 ~ 968 (1128)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
No 214
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.2e-40 Score=366.48 Aligned_cols=213 Identities=30% Similarity=0.516 Sum_probs=180.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC----------
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---------- 813 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~---------- 813 (1128)
|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 578999999964 37999999999999999999999999999999999999999999999999987543
Q ss_pred ---hHHhhhceEEEcCCCcccc-ccHhhccccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001189 814 ---LMDLRKILGIIPQSPVLFS-GTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 881 (1128)
Q Consensus 814 ---~~~~r~~i~~v~Q~~~lf~-~Tv~~nl~~~~----~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~L 881 (1128)
...+|+.++|+||++.+|. .|+.+|+.... .... +.+.++++.. |++.........|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV-----------GLADKADHMPAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhHhhcChhhc
Confidence 2356788999999998885 69999996421 1111 2233333333 4444455556789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 882 SgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. |||+++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 7899999999999976 99999999999999
Q ss_pred ecChhHHhhcC
Q 001189 959 YDTPEELLSNE 969 (1128)
Q Consensus 959 ~g~~~~l~~~~ 969 (1128)
.|+++++.+..
T Consensus 228 ~g~~~~~~~~~ 238 (252)
T TIGR03005 228 QGKPDEIFRQP 238 (252)
T ss_pred eCCHHHHhcCC
Confidence 99999987654
No 215
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.7e-40 Score=370.41 Aligned_cols=213 Identities=21% Similarity=0.325 Sum_probs=180.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH---Hhhh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~ 819 (1128)
.|+++||+++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4899999999964 3699999999999999999999999999999999999999999999999998776543 3467
Q ss_pred ceEEEcCCCccccc-cHhhccccC----CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
.++|+||++.+|.. |+.+|+.+. ..... +.+.+.++..+ +.........+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVG-----------LRGAAKLMPSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHH
Confidence 89999999999876 999999642 11111 12333344433 333334445689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++++.. ||+|++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998653 6899999999999987 99999999999999999999876
Q ss_pred c
Q 001189 968 N 968 (1128)
Q Consensus 968 ~ 968 (1128)
.
T Consensus 234 ~ 234 (269)
T PRK11831 234 N 234 (269)
T ss_pred C
Confidence 4
No 216
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-40 Score=384.46 Aligned_cols=218 Identities=23% Similarity=0.406 Sum_probs=185.9
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++ .|+.|
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999964 369999999999999999999999999999999999999999999999999987664 46789
Q ss_pred EEEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
||+||++.+|.. ||.+|+.+.. .... +++.+.++..++.++. .....+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999976 9999997532 1222 2344455555554433 3344679999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
||+++|++|||||||++||+.++..+.+.|+++. .+.|+|+|||+++++.. ||||++|++|++++.|+|+++..++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999998887754 37899999999999877 99999999999999999999998765
Q ss_pred CchH
Q 001189 971 SSFS 974 (1128)
Q Consensus 971 ~~~~ 974 (1128)
..|.
T Consensus 243 ~~~~ 246 (377)
T PRK11607 243 TRYS 246 (377)
T ss_pred cHHH
Confidence 4443
No 217
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=366.45 Aligned_cols=219 Identities=24% Similarity=0.386 Sum_probs=183.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~--p---~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 4899999999964 369999999999999999999999999999999999997 3 59999999999864 3445
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC----CCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~----~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+... ..+. ++.++++..++.+.+ .........+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence 67889999999999998899999964311 1112 233334444433221 12345566789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998777999999999999877 9999999999999999999987
Q ss_pred hcCC
Q 001189 967 SNEG 970 (1128)
Q Consensus 967 ~~~~ 970 (1128)
++..
T Consensus 243 ~~~~ 246 (259)
T PRK14274 243 SNPD 246 (259)
T ss_pred hCCC
Confidence 6543
No 218
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.2e-40 Score=359.38 Aligned_cols=202 Identities=22% Similarity=0.371 Sum_probs=171.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999876554 2468999
Q ss_pred EcCCCcccc-ccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|. .|+++|+.+.. .... +++.++++..++ +........+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI-----------EHLLDRKPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------HHHHhCChhhCCHHHHHHHHHHHHH
Confidence 999999885 59999996531 1122 223334444444 4444445568999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999865 37899999999999887 9999999999999876
No 219
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.2e-40 Score=363.85 Aligned_cols=217 Identities=26% Similarity=0.445 Sum_probs=182.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC--hHHhhhce
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r~~i 821 (1128)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|+.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999964 36999999999999999999999999999999999999999999999999987643 34567889
Q ss_pred EEEcCCCcccc-ccHhhccccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~----~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
+|+||++.+|. .|+++|+.+.. .....+..+ .+.+.++. .|++.........||||||||++||||++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~--~gl~~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAK--VGLAERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHH--cCChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence 99999998886 59999996421 111111111 12334443 25555556666789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++..
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 9999999999999999999999999998865 47999999999999977 9999999999999999999987543
No 220
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.1e-40 Score=346.97 Aligned_cols=178 Identities=33% Similarity=0.574 Sum_probs=164.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+...+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999965434699999999999999999999999999999999999999999999999988765 5667889999
Q ss_pred EcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
+||++.+|..|+++|+ ..+||||||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999887 35799999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEec
Q 001189 904 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 960 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g 960 (1128)
|||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999876789999999999999889999999999998764
No 221
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-40 Score=367.32 Aligned_cols=218 Identities=28% Similarity=0.417 Sum_probs=182.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCCC--hH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG--LM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~~--~~ 815 (1128)
.|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 5999999999964 3699999999999999999999999999999999999985 7999999999986532 34
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
.+|+.++|+||++.+|..|+++|+.+.. ..... ++.++++.+++.+. +.........+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE-------TSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcc-------hhhhhcCChhhCCHHHHHH
Confidence 5678899999999998899999997421 11221 23344444443211 1223345567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
++|||||+.+|+||||||||++||+.+...+.+.|++..+++|||+|||+++++.+ ||||++|++|++++.|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987667999999999999877 99999999999999999999976
Q ss_pred cC
Q 001189 968 NE 969 (1128)
Q Consensus 968 ~~ 969 (1128)
++
T Consensus 243 ~~ 244 (258)
T PRK14268 243 NP 244 (258)
T ss_pred CC
Confidence 54
No 222
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-40 Score=364.22 Aligned_cols=219 Identities=29% Similarity=0.447 Sum_probs=183.8
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~ 814 (1128)
|.|+++||+++|++ .++++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 45899999999964 3699999999999999999999999999999999999863 69999999999864 344
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCC---C-CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---E-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~-~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
..+|+.++|+||++.+|..|+++|+.+.. . .. ++++.++++.+++.+. +.........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE-------VKDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hHHHHhcCCCCCCHHHH
Confidence 56788999999999998899999996421 1 11 2233444444443221 22334556678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||++|||||+.+|++|||||||++||+.++..+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668899999999999877 999999999999999999998
Q ss_pred hhcC
Q 001189 966 LSNE 969 (1128)
Q Consensus 966 ~~~~ 969 (1128)
....
T Consensus 233 ~~~~ 236 (250)
T PRK14240 233 FTNP 236 (250)
T ss_pred HhCC
Confidence 7543
No 223
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.3e-40 Score=366.08 Aligned_cols=215 Identities=27% Similarity=0.395 Sum_probs=181.5
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC--------
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-------- 813 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~-------- 813 (1128)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++....
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 56999999999964 36999999999999999999999999999999999999999999999999886421
Q ss_pred -----hHHhhhceEEEcCCCccccc-cHhhccccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhh-hcCC
Q 001189 814 -----LMDLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQV-SEAG 878 (1128)
Q Consensus 814 -----~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~----~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v-~e~g 878 (1128)
...+|+.++|+||++.+|.. |+++|+.+.. .... +++.++++.. |+.... ....
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~ 150 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV-----------GIDERAQGKYP 150 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------CCChhhhhCCc
Confidence 24567889999999999975 9999986421 1111 2233333433 343332 4456
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
..||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|||+|||+++++.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7899999999999999999999999999999999999999999999875 47999999999999987 999999999999
Q ss_pred EEecChhHHhhcC
Q 001189 957 LEYDTPEELLSNE 969 (1128)
Q Consensus 957 ~~~g~~~~l~~~~ 969 (1128)
++.|+++++.+..
T Consensus 231 ~~~~~~~~~~~~~ 243 (257)
T PRK10619 231 EEEGAPEQLFGNP 243 (257)
T ss_pred EEeCCHHHhhhCc
Confidence 9999999987543
No 224
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-40 Score=366.59 Aligned_cols=211 Identities=26% Similarity=0.445 Sum_probs=182.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999988777778888999
Q ss_pred EcCCCccccc-cHhhccccCCC--------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSE--------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~--------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
+||++.++.+ |+.+|+.+... .. ++++.++++..++. .........||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-----------HLADRRLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-----------HHHcCCcccCCHHHHHHHHH
Confidence 9999988876 99999975310 01 12334444444443 33444557899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998865 47899999999999877 99999999999999999988764
No 225
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-40 Score=360.61 Aligned_cols=204 Identities=25% Similarity=0.328 Sum_probs=171.6
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|+++|++++|+... +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996421 369999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEcCCCcccc-ccHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|+||++.+|. .|+++|+.+.. ... ++++.++++..++.+ .......+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-----------FENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCcccCCHHHHHHHHHHH
Confidence 99999999887 59999986421 111 223444445444443 334444689999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEe--CCEEEEecChh
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 963 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~--~G~i~~~g~~~ 963 (1128)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++++.. ||+|++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999864 37899999999998876 99999999 79999987653
No 226
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-40 Score=375.25 Aligned_cols=223 Identities=25% Similarity=0.383 Sum_probs=184.3
Q ss_pred cEEEEEEEEEeCCC--------CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001189 743 SIKFEDVVLRYRPE--------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 814 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~--------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~ 814 (1128)
.|+++|+++.|+.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2369999999999999999999999999999999999999999999999999988765
Q ss_pred H---HhhhceEEEcCCCc--cccc-cHhhcccc----CCCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 815 M---DLRKILGIIPQSPV--LFSG-TVRFNLDP----FSEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 815 ~---~~r~~i~~v~Q~~~--lf~~-Tv~~nl~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
. .+|++|+||||+|. ++.. |+.+|+.. ...... +++.++++.+++.+ .........
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP----------EHYDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh----------HHhcCCCcc
Confidence 4 45778999999993 5543 88887741 111121 23444455544421 122334568
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEE
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVL 957 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~ 957 (1128)
||||||||++|||||+.+|+|||+||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998653 7899999999999987 9999999999999
Q ss_pred EecChhHHhhcCCCchHH
Q 001189 958 EYDTPEELLSNEGSSFSK 975 (1128)
Q Consensus 958 ~~g~~~~l~~~~~~~~~~ 975 (1128)
|.|+++++.+++...|.+
T Consensus 235 e~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EECCHHHHhcCCCCHHHH
Confidence 999999999876545544
No 227
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-40 Score=361.05 Aligned_cols=217 Identities=28% Similarity=0.411 Sum_probs=180.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-hhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i 821 (1128)
.|+++|++++|+. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 3899999999964 36999999999999999999999999999999999999999999999999998877654 57789
Q ss_pred EEEcCCCccccc-cHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+|+||++.+|.. |+++|+..... ....+..+. +.+.++.++ +++.........||||||||++||||++.+|
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999999975 99999965221 111111111 112222221 1222233445689999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++++.. |||+++|++|++++.|+++++..
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999998865 47999999999998877 99999999999999999999864
No 228
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.4e-40 Score=358.29 Aligned_cols=200 Identities=29% Similarity=0.459 Sum_probs=169.4
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++|++++|+...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999965224699999999999999999999999999999999999999999999999999877777788899999
Q ss_pred cCCCc--cccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 825 PQSPV--LFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 825 ~Q~~~--lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
||++. ++..|+++|+.+.. .... +++.+.++..+ ++.........||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVG-----------LEGLRDRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------cHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 99983 56779999996421 1111 22333444443 44444445578999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGR 955 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~ 955 (1128)
+++|++|||||||++||+.+.+.+.+.|++..+ ++|||++||+++++.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998754 7899999999999988 99999999985
No 229
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-40 Score=371.89 Aligned_cols=217 Identities=26% Similarity=0.457 Sum_probs=180.0
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHH
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 816 (1128)
|+++|++++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 3699999999999999999999999999999999999999999999999998653 2345
Q ss_pred hhhceEEEcCCC--ccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001189 817 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 817 ~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~ 890 (1128)
.|+.++|+||+| .+|..|+++|+.+.. ....++..+ .+.++++. .|++ ........+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKK--VGLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCChhHhhCCcccCCHHHHHHHH
Confidence 677899999998 577789999996421 122222111 12233333 2454 2345556789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|++|||||||++||+.+...+.+.|+++. .+.|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999875 47899999999999877 99999999999999999999875
No 230
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=362.87 Aligned_cols=215 Identities=26% Similarity=0.431 Sum_probs=183.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-hhhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~ 822 (1128)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...++.. .|+.++
T Consensus 4 l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 4 LTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred EEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 889999999964 36999999999999999999999999999999999999999999999999998777644 567899
Q ss_pred EEcCCCccccc-cHhhccccCCC----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~----~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|+||++.+|.. |+++|+.+... .+.++. ...+.++++.+ |++.........||||||||++||||++.
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 99999998875 99999975321 111111 11233445443 55555666677899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998765 47899999999988877 99999999999999999998864
No 231
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=7.6e-40 Score=361.92 Aligned_cols=217 Identities=26% Similarity=0.452 Sum_probs=181.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC--------hH
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--------LM 815 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--------~~ 815 (1128)
++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..
T Consensus 4 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 899999999964 36999999999999999999999999999999999999999999999999986532 24
Q ss_pred HhhhceEEEcCCCcccc-ccHhhccccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 816 DLRKILGIIPQSPVLFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~-~Tv~~nl~~~----~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
.+|+.++|+||++.+|. .|+++|+.+. .....++..+ .+.+.++.+ |++........+||||||||++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHHHH
Confidence 56788999999998886 5999999642 1112111111 122334432 4554455666789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999988654 7899999999999977 999999999999999999998754
Q ss_pred C
Q 001189 969 E 969 (1128)
Q Consensus 969 ~ 969 (1128)
.
T Consensus 235 ~ 235 (250)
T PRK11264 235 P 235 (250)
T ss_pred C
Confidence 3
No 232
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=368.05 Aligned_cols=213 Identities=22% Similarity=0.374 Sum_probs=183.8
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++||+++|+. +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35999999999964 3699999999999999999999999999999999999999999999999999888877888899
Q ss_pred EEEcCCCcccc-ccHhhccccCC--C------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFS--E------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~--~------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
+|+||++.+|. .|+++|+.+.. . .. ++.+.++++..++.+ .......+||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH-----------LADQSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-----------HhcCCcccCChHHHHHH
Confidence 99999998875 59999996531 0 01 123444455544443 34445578999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+||||++++|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998653 7899999999999877 9999999999999999998876
Q ss_pred h
Q 001189 967 S 967 (1128)
Q Consensus 967 ~ 967 (1128)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 4
No 233
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-40 Score=369.18 Aligned_cols=215 Identities=27% Similarity=0.415 Sum_probs=184.8
Q ss_pred cEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 743 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
.|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999642 23599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCCc--cccccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 822 GIIPQSPV--LFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 822 ~~v~Q~~~--lf~~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
+|+||+|. ++..|+.+|+.+.. ...++ ++.++++.+++.++. ......||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-----------TREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHHHHH
Confidence 99999983 66779999997421 12232 234455555554443 334468999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998753 7899999999999988999999999999999999998764
No 234
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-40 Score=364.91 Aligned_cols=218 Identities=28% Similarity=0.414 Sum_probs=182.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC---CCC--CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VEL--ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~---~~p--~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|+++.|++ +++|+|+||+|++||++||+||||||||||+++|+|+ ++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4899999999964 3699999999999999999999999999999999997 454 589999999998754 245
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+.. .. . ++++.++++.+++.+. +.+.......+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE-------VKDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcc-------hhhhhhCCcccCCHHHHH
Confidence 6788899999999999889999996421 11 1 1223444444443221 123345566789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998678999999999999876 9999999999999999999998
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
++.
T Consensus 234 ~~~ 236 (250)
T PRK14245 234 TNP 236 (250)
T ss_pred cCC
Confidence 654
No 235
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-40 Score=364.51 Aligned_cols=218 Identities=25% Similarity=0.407 Sum_probs=182.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CC---CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--EL---ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p---~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|++ .| ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999964 36999999999999999999999999999999999995 46 499999999998643 344
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---C-CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---E-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~-~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+.. . .. ++++.++++.+++.+. +.+..+....+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE-------VKDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchh-------HHHHHhcCcccCCHHHHH
Confidence 5788899999999999899999996421 1 11 1223334444443321 223445566789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+.+|+||||||||++||+.+...+.+.|++..+++|||++||+++++.. ||||++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
+.+
T Consensus 236 ~~~ 238 (252)
T PRK14239 236 MNP 238 (252)
T ss_pred hCC
Confidence 654
No 236
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-40 Score=364.15 Aligned_cols=211 Identities=27% Similarity=0.422 Sum_probs=181.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999988877777889999
Q ss_pred EcCCCcc-ccccHhhccccCCC---C----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVL-FSGTVRFNLDPFSE---H----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~l-f~~Tv~~nl~~~~~---~----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+ +..|+++|+.+... . .+..+.++++..++. .........||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-----------HLAGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-----------hHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999987 56799999865321 1 122344444544443 334444568999999999999999
Q ss_pred c------cCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 896 L------RRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 896 l------~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+ .+|++|||||||++||+.+...+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999999865 47899999999999986 9999999999999999998886
Q ss_pred h
Q 001189 967 S 967 (1128)
Q Consensus 967 ~ 967 (1128)
.
T Consensus 230 ~ 230 (258)
T PRK13548 230 T 230 (258)
T ss_pred C
Confidence 4
No 237
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.6e-40 Score=357.69 Aligned_cols=207 Identities=27% Similarity=0.410 Sum_probs=171.2
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh---h
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL---R 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~---r 818 (1128)
|+++||+++|++.. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 369999999999999999999999999999999999999999999999999988765443 3
Q ss_pred -hceEEEcCCCcccc-ccHhhccccC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 819 -KILGIIPQSPVLFS-GTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 819 -~~i~~v~Q~~~lf~-~Tv~~nl~~~---~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+.++|+||++.+|. .|+++|+.+. ......+.. ..+.++++. .|++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-----ERAYEMLEK--VGLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999886 5999999642 111111111 011233333 24544455555789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEE
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVL 957 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~ 957 (1128)
|++.+|+||||||||++||+.+...+.+.|+++. .++|+|++||+++.+..||+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999865 378999999999999889999999999985
No 238
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-40 Score=369.60 Aligned_cols=215 Identities=26% Similarity=0.424 Sum_probs=183.9
Q ss_pred cEEEEEEEEEeCCC----CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC-hHHh
Q 001189 743 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~----~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~ 817 (1128)
.|+++|++++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 246999999999999999999999999999999999999999999999999987643 3567
Q ss_pred hhceEEEcCCCc--cccccHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 818 RKILGIIPQSPV--LFSGTVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 818 r~~i~~v~Q~~~--lf~~Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
|+.++|+||+|. +|..|+.+|+.+... .. ++++.++++.+++.+++.+ ...+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 889999999984 666689999965321 12 2345555666666554444 346899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
++|||||+++|++|||||||++||+.+...+.+.|+++. .++|||+|||+++++..|||+++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 378999999999999889999999999999999999997
Q ss_pred hc
Q 001189 967 SN 968 (1128)
Q Consensus 967 ~~ 968 (1128)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
No 239
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-40 Score=366.34 Aligned_cols=218 Identities=25% Similarity=0.462 Sum_probs=182.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++... +..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 4999999999964 369999999999999999999999999999999999865 7899999999998653 334
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|.+|+++|+.+.. .. . ++.+.++++..++.. ++.........+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD-------EVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc-------chHHHHhcCcccCCHHHHH
Confidence 5688899999999999889999986421 11 1 122333444433321 1123345566789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667899999999999876 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
.+.
T Consensus 252 ~~~ 254 (268)
T PRK14248 252 TSP 254 (268)
T ss_pred hCC
Confidence 654
No 240
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-40 Score=368.59 Aligned_cols=215 Identities=26% Similarity=0.442 Sum_probs=182.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999754346999999999999999999999999999999999999999999999999998878778889999
Q ss_pred EEcCCCc-cc-cccHhhccccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 823 IIPQSPV-LF-SGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 823 ~v~Q~~~-lf-~~Tv~~nl~~~~~---~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
|+||+|. +| ..|+++|+.+... ... +++.++++..++. ........+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-----------ERADYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCCcccCCHHHHHHHHHHH
Confidence 9999984 44 4589999864311 111 2233444444433 3334455789999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|+++++...
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998653 7899999999999888999999999999999999998754
No 241
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2e-40 Score=356.22 Aligned_cols=203 Identities=29% Similarity=0.481 Sum_probs=174.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++|+|+ ++++|+|+||++++|++++|+||||||||||||+|+|.++|.+|.+.. +.+.+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999997 368999999999999999999999999999999999999998875432 22369
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCC-----------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 187 AYVPQVSWI-FNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 187 ~~v~Q~~~l-~~~Tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
|||||.+.. +..||+|-+.+|+.. |.+.+.++++.+++.+..++. ...||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHH
Confidence 999999755 688999999998521 234567778888888766432 257999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
.|||||+++|+|++||||||+||....-.+++.+.+.. .+|+|+|+|+||+... +.||+++.|++|+++.+|++++++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999998766554 4599999999999875 579999999999999999999887
Q ss_pred hcc
Q 001189 333 NNG 335 (1128)
Q Consensus 333 ~~~ 335 (1128)
+..
T Consensus 228 T~e 230 (258)
T COG1120 228 TEE 230 (258)
T ss_pred CHH
Confidence 653
No 242
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-40 Score=365.60 Aligned_cols=218 Identities=25% Similarity=0.441 Sum_probs=185.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 20 ~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 20 ALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred EEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 5999999999964 479999999999999999999999999999999999997 589999999999864 3345
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---C-CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---E-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~-~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.|+|+||++.+|..|+++|+.+.. . .. ++++.++++..++.+.+ +...+....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~q 170 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQQ 170 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHHH
Confidence 6788999999999999889999997521 1 11 22344445555443222 23455667789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++++|++|||||||++||+.+...+.+.|++..++.|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988777999999999999876 9999999999999999999997
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
+.+
T Consensus 251 ~~~ 253 (267)
T PRK14237 251 TNP 253 (267)
T ss_pred cCC
Confidence 643
No 243
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=364.40 Aligned_cols=219 Identities=29% Similarity=0.421 Sum_probs=182.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 369999999999999999999999999999999999997 479999999999864 3344
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC---C-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+... . . ++++.++++..++++. ..........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE-------TKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcc-------hHHHhccChhhCCHHHHH
Confidence 57888999999999998999999974311 1 1 1223334444333210 012234556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999877 9999999999999999999987
Q ss_pred hcCC
Q 001189 967 SNEG 970 (1128)
Q Consensus 967 ~~~~ 970 (1128)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14251 235 IAPK 238 (251)
T ss_pred hCCC
Confidence 6543
No 244
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.1e-40 Score=358.67 Aligned_cols=210 Identities=28% Similarity=0.437 Sum_probs=177.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-hhhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~ 822 (1128)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 478999999964 36999999999999999999999999999999999999999999999999998777654 367899
Q ss_pred EEcCCCccccc-cHhhccccCCC---CCHH-HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE---HSDA-DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~---~~~~-~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|+||++.+|.. |+++|+.+... .... ...++++..+ +++........+||||||||++|||||++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999976 99999964211 1111 1122222221 23334455567899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++++.. ||+|+++++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999998653 7899999999999987 999999999999999999887
No 245
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.8e-40 Score=358.15 Aligned_cols=200 Identities=26% Similarity=0.389 Sum_probs=170.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH---Hhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 820 (1128)
|+++|++++|+.+ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999522 4799999999999999999999999999999999999999999999999999876643 46778
Q ss_pred eEEEcCCCcccc-ccHhhccccCC---CC----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFS-GTVRFNLDPFS---EH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~-~Tv~~nl~~~~---~~----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
++|+||++.+|. .|+++|+.+.. .. .++++.++++..++.+.+.+ ...+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHHH
Confidence 999999999886 59999986421 11 12345555666555544333 3357999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 955 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~ 955 (1128)
|||+.+|++|||||||++||+.++..+.+.|++.. +++|+|+|||+++++.. ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999864 47999999999999987 99999999985
No 246
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-40 Score=362.15 Aligned_cols=215 Identities=25% Similarity=0.358 Sum_probs=179.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC------CChHHh
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------FGLMDL 817 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~------~~~~~~ 817 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999964 369999999999999999999999999999999999999999999999998731 223456
Q ss_pred hhceEEEcCCCccccc-cHhhccccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 818 RKILGIIPQSPVLFSG-TVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~-Tv~~nl~~~----~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
|+.++|+||++.+|.+ |+++|+... ......+.. ..+.++++.+ |++........+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHH
Confidence 7889999999999875 999998631 111111111 1123334332 455555555678999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
||++.+|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 99999999999999999999999999999999865 37999999999999976 99999999999999999988754
No 247
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-40 Score=362.55 Aligned_cols=220 Identities=22% Similarity=0.391 Sum_probs=184.0
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCceEEECCEecCCC--Ch
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAKF--GL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~--p---~~G~I~i~g~~i~~~--~~ 814 (1128)
+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++... ..
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 56999999999964 369999999999999999999999999999999999986 4 689999999998653 34
Q ss_pred HHhhhceEEEcCCCcccc-ccHhhccccC----CCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001189 815 MDLRKILGIIPQSPVLFS-GTVRFNLDPF----SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 885 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~-~Tv~~nl~~~----~~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq 885 (1128)
..+|+.++|+||++.+|. .|+++|+.+. .... ++++.++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHHH
Confidence 467888999999999887 5999999642 1111 123344444444432221 22344567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~ 964 (1128)
|||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|||+|||+++++.. ||++++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999876 99999999999999999999
Q ss_pred HhhcCC
Q 001189 965 LLSNEG 970 (1128)
Q Consensus 965 l~~~~~ 970 (1128)
+...+.
T Consensus 234 ~~~~~~ 239 (252)
T PRK14256 234 IFTTPE 239 (252)
T ss_pred HHhCCC
Confidence 876543
No 248
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.7e-39 Score=362.51 Aligned_cols=210 Identities=24% Similarity=0.360 Sum_probs=188.8
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|+++|+++.. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++| .|
T Consensus 38 ~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i 100 (282)
T cd03291 38 NNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RI 100 (282)
T ss_pred CeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EE
Confidence 469999999952 3699999999999999999999999999999999999999999999998 39
Q ss_pred EEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+|+||++.+|..|+++|+.+.....+.++.+.++.+++.+.+..+|.++++.+++.+.+||||||||++|||||+.+|++
T Consensus 101 ~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i 180 (282)
T cd03291 101 SFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL 180 (282)
T ss_pred EEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999976433344456677788888888999999999888888899999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHH-HHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 902 LVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l-~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||||++||+.+...+.+.+ +....++|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus 181 LiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 181 YLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999888754 555567999999999999988999999999999999999998754
No 249
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-40 Score=374.53 Aligned_cols=224 Identities=21% Similarity=0.385 Sum_probs=182.8
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEecCCCChHHh
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~----p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
|+++|+++.|+... ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++..++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 89999999996432 359999999999999999999999999999999999998 489999999999998887665
Q ss_pred hh----ceEEEcCCCc--ccc-ccHhhcc----ccCCCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCC
Q 001189 818 RK----ILGIIPQSPV--LFS-GTVRFNL----DPFSEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 882 (1128)
Q Consensus 818 r~----~i~~v~Q~~~--lf~-~Tv~~nl----~~~~~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LS 882 (1128)
++ .|+||||+|. ++. .|+.+++ ....... .+++.++++.+++.+. .........+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhCC
Confidence 43 6999999994 443 2666544 2221111 2334555555555321 122345557899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001189 883 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 883 gGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
||||||++|||||+.+|+|||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999976 999999999999999
Q ss_pred cChhHHhhcCCCchHH
Q 001189 960 DTPEELLSNEGSSFSK 975 (1128)
Q Consensus 960 g~~~~l~~~~~~~~~~ 975 (1128)
|+++++.+++...|.+
T Consensus 236 g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CCHHHHhhCCCChHHH
Confidence 9999999876555543
No 250
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.5e-40 Score=437.55 Aligned_cols=220 Identities=27% Similarity=0.398 Sum_probs=189.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....|+.+|
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 599999999996333579999999999999999999999999999999999999999999999999975 4566788999
Q ss_pred EEcCCCccccc-cHhhccccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~---~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
|+||++.+|.. |++|||.++.. ... +++.+.++.. |++........+|||||||||+||||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~v-----------gL~~~~~~~~~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDT-----------GLHHKRNEEAQDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999875 99999975421 121 2233334443 44444555567899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCch
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 973 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~ 973 (1128)
|+.+|+||||||||+|||+.+++.+++.|++..+++|||++||+++++.. ||||++|++|++++.|++.+|.++.+..|
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy 1155 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGF 1155 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcE
Confidence 99999999999999999999999999999998778999999999999987 99999999999999999999988766444
Q ss_pred H
Q 001189 974 S 974 (1128)
Q Consensus 974 ~ 974 (1128)
.
T Consensus 1156 ~ 1156 (2272)
T TIGR01257 1156 Y 1156 (2272)
T ss_pred E
Confidence 3
No 251
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-40 Score=362.99 Aligned_cols=218 Identities=26% Similarity=0.430 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 3899999999964 3799999999999999999999999999999999999984 899999999998653 234
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~----~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+.. ...+ +++.++++..++.+.+ +...+....+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence 5678899999999999899999997421 1111 2234444444443222 22345566789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999987677999999999998876 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
+..
T Consensus 234 ~~~ 236 (250)
T PRK14262 234 ERP 236 (250)
T ss_pred hCC
Confidence 643
No 252
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-40 Score=362.57 Aligned_cols=203 Identities=29% Similarity=0.401 Sum_probs=175.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+++.++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 4999999999964 36999999999999999999999999999999999999999999999998763 4678899
Q ss_pred EEcCCCcccc-ccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 823 IIPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 823 ~v~Q~~~lf~-~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
|+||++.+|. .|+++|+.+... ..++++.++++..++.+ .......+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-----------RANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999887 599999975321 12344555555555543 3344456899999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChh
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 963 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~ 963 (1128)
+|||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998864 37899999999999876 9999999999999988764
No 253
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.2e-40 Score=375.37 Aligned_cols=203 Identities=28% Similarity=0.468 Sum_probs=173.3
Q ss_pred EeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccc
Q 001189 752 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 831 (1128)
Q Consensus 752 ~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 831 (1128)
+|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 5643 369999999999999999999999999999999999999999999999999876 3456788999999999988
Q ss_pred cc-cHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 832 SG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 832 ~~-Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
.. |+++|+.++.. .. ++++.++++..++ +........+||||||||++|||||+++|++||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-----------GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 99999975321 11 1234444444444 333344456899999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 904 LDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||++||+.+.+.+++.|++.. +++|||++||+++++.. ||+|++|++|++++.|+++++.++
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999999875 47899999999999987 999999999999999999998764
No 254
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=362.70 Aligned_cols=218 Identities=21% Similarity=0.398 Sum_probs=185.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4899999999964 369999999999999999999999999999999999986 479999999998853 3456
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC---C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
.+|+.++|+||++.+|..|+++|+.+... . .++++.++++.+++.+.+. ........+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 67889999999999988899999975321 1 1233444555555544332 223455678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe---------CCEEEEe
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLEY 959 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~---------~G~i~~~ 959 (1128)
+|||||+++|+||||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999988777899999999999887 99999998 8999999
Q ss_pred cChhHHhhcC
Q 001189 960 DTPEELLSNE 969 (1128)
Q Consensus 960 g~~~~l~~~~ 969 (1128)
|+++++.+.+
T Consensus 241 ~~~~~~~~~~ 250 (264)
T PRK14243 241 DRTEKIFNSP 250 (264)
T ss_pred CCHHHHHhCC
Confidence 9999997654
No 255
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=360.93 Aligned_cols=218 Identities=26% Similarity=0.416 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-----~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4899999999964 36999999999999999999999999999999999999997 69999999998643 345
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC----CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~----~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+... ... +.+.++++..++.+. +.........+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE-------VKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh-------hhhHhhCCcccCCHHHHH
Confidence 67889999999999998899999975311 111 223333444444322 223355667789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999988 8999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
..+
T Consensus 235 ~~~ 237 (251)
T PRK14249 235 SRP 237 (251)
T ss_pred hCC
Confidence 654
No 256
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.2e-40 Score=356.28 Aligned_cols=201 Identities=24% Similarity=0.352 Sum_probs=170.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH---Hhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 820 (1128)
|+++|++++|+.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. ..|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999643 4699999999999999999999999999999999999999999999999999876543 46788
Q ss_pred eEEEcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
++|+||++.+|.. |+++|+.+.. ... ++++.++++..++.+. ......+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK-----------HRALPAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHHHHHHHHH
Confidence 9999999998875 9999996431 111 1234445555444433 3334467999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
|||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999864 47999999999999987 999999999974
No 257
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-40 Score=368.70 Aligned_cols=218 Identities=22% Similarity=0.373 Sum_probs=181.4
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHH
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 816 (1128)
|+++||+++|+... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996421 3699999999999999999999999999999999999999999999999998754 3456
Q ss_pred hhhceEEEcCCC--ccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001189 817 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 817 ~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~ 890 (1128)
+|+.|+|+||++ .+|..|+++|+.+.. ..+.++..+. +.++++. .|++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLAL--VGISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 788899999998 577889999996421 1222222111 1233333 2444 2345556789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998653 7899999999999977 999999999999999999998653
No 258
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-40 Score=364.48 Aligned_cols=218 Identities=25% Similarity=0.438 Sum_probs=182.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCCCC--hHH
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKFG--LMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~~--~~~ 816 (1128)
-+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 578999999964 379999999999999999999999999999999999986 47999999999886543 235
Q ss_pred hhhceEEEcCCCccccccHhhccccCC---CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~--~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
+|+.++|+||++.+|..|+++|+.+.. .. . ++++.++++..++.+.+ .+.++..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHH
Confidence 688899999999999889999986421 11 1 12233444444432211 12345556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++++.. ||||++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987678999999999999877 9999999999999999999998
Q ss_pred hcCC
Q 001189 967 SNEG 970 (1128)
Q Consensus 967 ~~~~ 970 (1128)
+.+.
T Consensus 237 ~~~~ 240 (251)
T PRK14244 237 KNPQ 240 (251)
T ss_pred cCCC
Confidence 6543
No 259
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=9.2e-40 Score=363.95 Aligned_cols=218 Identities=27% Similarity=0.452 Sum_probs=179.3
Q ss_pred EEEEEEEEEeCCC-------CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001189 744 IKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~-------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 816 (1128)
|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 246999999999999999999999999999999999999999999999999998776543
Q ss_pred ---hhhceEEEcCCCc--ccc-ccHhhccccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001189 817 ---LRKILGIIPQSPV--LFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 885 (1128)
Q Consensus 817 ---~r~~i~~v~Q~~~--lf~-~Tv~~nl~~~----~~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGq 885 (1128)
+|+.|+|+||++. ++. .|+++|+.+. ......+. ...+.++++.+ |++ .........|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 5778999999983 443 5999998521 11111110 11122333332 443 23455567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
|||++|||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998653 7899999999999986 999999999999999999
Q ss_pred hHHhhc
Q 001189 963 EELLSN 968 (1128)
Q Consensus 963 ~~l~~~ 968 (1128)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999864
No 260
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-40 Score=361.23 Aligned_cols=218 Identities=24% Similarity=0.387 Sum_probs=184.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999964 3699999999999999999999999999999999999885 799999999998653 334
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC---C-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---~-~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
..|+.++|+||++.+|..|+++|+.+... . .. +++.++++.+++.+. +..........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDE-------VKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchh-------hhhHhhCCcccCCHHHHH
Confidence 56888999999999998999999974311 1 11 233445555444221 122344556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987767999999999999877 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
...
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 543
No 261
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.3e-40 Score=340.61 Aligned_cols=211 Identities=30% Similarity=0.512 Sum_probs=178.0
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------
Q 001189 117 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 181 (1128)
Q Consensus 117 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 181 (1128)
.+.|++++++++|. ++.+++|+||+|++||+++|+|+||||||||+++|.|+++|++|.+..
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 35699999999996 478999999999999999999999999999999999999999986532
Q ss_pred ecCcEEEEecCCCCC-cccHHHHHhcC----CCCCHHHHH----HHHHHhCcHHH-HhcCCCCCcccccCCCCCCChHHH
Q 001189 182 IRGTVAYVPQVSWIF-NATVRDNILFG----SAFEPARYE----KAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 182 ~~~~i~~v~Q~~~l~-~~Tv~eni~~g----~~~~~~~~~----~~~~~~~l~~~-~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
++.++|+++|+-.|| +.||+||+.|- ...+++.++ .-++.++|... .+.+| ..||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 456799999999999 67999999984 223444433 34678898877 77777 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc--cCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecCh
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE--LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 328 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 328 (1128)
+|+|||||+..||+++++||||++|||.+...+-+ +++.. .-|.|+|+||||++.+.. ||||+++.+|+|+..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~-LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDE-LIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHH-HHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999998776654 55432 238999999999998775 799999999999999999
Q ss_pred hHHhhcch-HHHHHH
Q 001189 329 EDLSNNGE-LFQKLM 342 (1128)
Q Consensus 329 ~~l~~~~~-~~~~~~ 342 (1128)
+++.+... ..++++
T Consensus 231 ~el~~sd~P~v~qf~ 245 (263)
T COG1127 231 EELLASDDPWVRQFF 245 (263)
T ss_pred HHHHhCCCHHHHHHh
Confidence 99987643 344443
No 262
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-40 Score=366.90 Aligned_cols=212 Identities=26% Similarity=0.432 Sum_probs=178.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHhhhce
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~i 821 (1128)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++. ..+...+|+.|
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999964 36999999999999999999999999999999999999999999999999985 23345678889
Q ss_pred EEEcCCCc--cccccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 822 GIIPQSPV--LFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 822 ~~v~Q~~~--lf~~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
+|+||++. ++..|+.+|+.+.. ..... ++.++++..++.+ .......+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH-----------FRHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh-----------HhcCCchhCCHHHHHHHHHH
Confidence 99999985 56678999986421 11222 2333444444433 23344568999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||+.+|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999864 47899999999999976 999999999999999999998754
No 263
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=361.42 Aligned_cols=218 Identities=24% Similarity=0.415 Sum_probs=183.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999964 3699999999999999999999999999999999999763 489999999998765 345
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~----~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
..|+.++|+||++.+|..|+++|+.+... .. ++.+.++++.+++.+ ++.+..+....+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHHH
Confidence 67888999999999998899999975321 11 122333444433322 2233456667789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999987767999999999999976 9999999999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
.+.
T Consensus 237 ~~~ 239 (253)
T PRK14261 237 ENP 239 (253)
T ss_pred hCC
Confidence 644
No 264
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-41 Score=338.70 Aligned_cols=207 Identities=26% Similarity=0.393 Sum_probs=175.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCC-------------------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA------------------- 178 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~------------------- 178 (1128)
+.++++|+++.|. ++.+|+|||++|++++++|++|||||||||||+++.+..+...+.
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4689999999997 367999999999999999999999999999999999988765531
Q ss_pred ceeecCcEEEEecCCCCCcccHHHHHhcCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 179 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 179 ~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
...+|++||+|+|.|.-|..||+|||.+|... . ++.+++.++.++|.+.+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 12256789999999999999999999998421 1 2456777888888776542 24456778999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhH
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||++|||||.-+|+|||||||||||||.+..+|.+ ++...+++-|+|+|||+++...+ .|++..+..|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEe-Li~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE-LITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHH-HHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 99999999999999999999999999999999976 45555578899999999998876 49999999999999999988
Q ss_pred Hhhcc
Q 001189 331 LSNNG 335 (1128)
Q Consensus 331 l~~~~ 335 (1128)
+..++
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87664
No 265
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.9e-40 Score=358.39 Aligned_cols=211 Identities=25% Similarity=0.405 Sum_probs=172.6
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh---HHhh
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r 818 (1128)
|+++||+++|+... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 269999999999999999999999999999999999999999999999999987663 4678
Q ss_pred hceEEEcCCC--ccc-cccHhhccccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSP--VLF-SGTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~--~lf-~~Tv~~nl~~~----~~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~ 890 (1128)
+.++|+||++ .++ ..|+++|+.+. ....+++..+.. ..+.++.+ |+. ........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8999999999 344 46999998632 111111111100 01233332 443 3456666789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
|||||+.+|++|||||||++||+.+++.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998754 7899999999999986 9999999999998764
No 266
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=364.11 Aligned_cols=219 Identities=25% Similarity=0.393 Sum_probs=184.0
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~ 814 (1128)
..++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 23 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 23 VVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred eEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 35999999999964 369999999999999999999999999999999999997 699999999999853 344
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCC---CCCHH-----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDA-----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~~~~-----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
..+|+.++|+||++.+|..|+++|+.+.. ...++ .+.++++..++. .++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 56788999999999999889999997421 11111 122233332221 1333445566778999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|++||+++++.. ||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999877 999999999999999999998
Q ss_pred hhcC
Q 001189 966 LSNE 969 (1128)
Q Consensus 966 ~~~~ 969 (1128)
..++
T Consensus 254 ~~~~ 257 (271)
T PRK14238 254 FSNP 257 (271)
T ss_pred HcCC
Confidence 7654
No 267
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=7.4e-40 Score=341.21 Aligned_cols=172 Identities=38% Similarity=0.671 Sum_probs=161.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+....++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999997533469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
++|++.+|..|+++|+ ||||||||++||||++++|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999987 99999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCEE
Q 001189 904 LDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRV 956 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i 956 (1128)
|||||++||+.+...+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998865 47899999999999877999999999974
No 268
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=7.3e-40 Score=363.14 Aligned_cols=211 Identities=27% Similarity=0.402 Sum_probs=180.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999999988887778888999
Q ss_pred EcCCCcc-ccccHhhccccCCC--------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 824 IPQSPVL-FSGTVRFNLDPFSE--------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 824 v~Q~~~l-f~~Tv~~nl~~~~~--------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
+||++.+ +..|+++|+.+... .. ++++.++++..++. .........||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-----------HLADRDMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCHHHHHHHHH
Confidence 9999864 45699999965311 01 12334444444443 33444556899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||++.+|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998753 6899999999999976 99999999999999999988753
No 269
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-40 Score=369.10 Aligned_cols=220 Identities=21% Similarity=0.387 Sum_probs=180.8
Q ss_pred ccEEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC----C-C
Q 001189 742 GSIKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----F-G 813 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~----~-~ 813 (1128)
+.|+++|++++|+... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999996432 259999999999999999999999999999999999999999999999999852 1 3
Q ss_pred hHHhhhceEEEcCCC--ccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHH
Q 001189 814 LMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrq 887 (1128)
...+|+.|+|+||+| .+|..|+++|+.+.. .....+..+. +.+.++.+ |+. .........|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV--QLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence 456788899999998 467779999996421 1122222111 12233322 442 2345556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~ 964 (1128)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988653 7899999999999876 99999999999999999998
Q ss_pred Hhhc
Q 001189 965 LLSN 968 (1128)
Q Consensus 965 l~~~ 968 (1128)
+...
T Consensus 238 ~~~~ 241 (289)
T PRK13645 238 IFSN 241 (289)
T ss_pred HhcC
Confidence 8653
No 270
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-40 Score=362.17 Aligned_cols=219 Identities=24% Similarity=0.354 Sum_probs=183.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 821 (1128)
.|+++|++++|++ .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999964 379999999999999999999999999999999999999999999999999988776554 4469
Q ss_pred EEEcCCCccccc-cHhhccccCCC----------CC-----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSE----------HS-----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 885 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~----------~~-----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq 885 (1128)
+|+||++.+|.. |+++|+.+... .. +....+. ...+.++++.+ |++........+|||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~G~ 158 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANRQAGNLAYGQ 158 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHhC--ChhhhhhCChhhCCHHH
Confidence 999999999976 99999975211 00 0000000 11223344443 56666677778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
|||++||||++.+|++|||||||++||+.+.+.+.+.|.+..+ ++|||++||+++.+.. ||++++|++|++++.|++
T Consensus 159 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 238 (255)
T PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCH
Confidence 9999999999999999999999999999999999999988643 7899999999999977 999999999999999999
Q ss_pred hHHhh
Q 001189 963 EELLS 967 (1128)
Q Consensus 963 ~~l~~ 967 (1128)
+++..
T Consensus 239 ~~~~~ 243 (255)
T PRK11300 239 EEIRN 243 (255)
T ss_pred HHHhh
Confidence 98864
No 271
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.5e-40 Score=355.67 Aligned_cols=197 Identities=33% Similarity=0.485 Sum_probs=165.2
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++|++++|+. .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 36799999964 36999999999999999999999999999999999999999999999998764 467789999
Q ss_pred cCCCcc---ccccHhhccccCCCC-----------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 825 PQSPVL---FSGTVRFNLDPFSEH-----------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 825 ~Q~~~l---f~~Tv~~nl~~~~~~-----------~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
||++.+ +..|+++|+.+.... .++++.++++..++.+. ......+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL-----------ADRQIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHH-----------HhCCcccCCHHHHHHHH
Confidence 999976 557999998642210 12234445555554433 33344689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++++.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999865 57899999999999977 9999999886 55544
No 272
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=9e-40 Score=356.26 Aligned_cols=206 Identities=22% Similarity=0.321 Sum_probs=173.7
Q ss_pred cEEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---h
Q 001189 743 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 817 (1128)
.|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999996432 25999999999999999999999999999999999999999999999999998776643 2
Q ss_pred -hhceEEEcCCCccccc-cHhhccccC---CCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 818 -RKILGIIPQSPVLFSG-TVRFNLDPF---SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 818 -r~~i~~v~Q~~~lf~~-Tv~~nl~~~---~~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
++.++|+||++.+|.. |+.+|+.+. .... .+++.++++..++.+.+. .....||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHH
Confidence 3579999999998875 999998642 1111 233455555555544433 3345799999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-C-CcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 959 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~-~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~ 959 (1128)
++|||||+.+|++|||||||++||+.+.+.+.+.|++.. + ++|||++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998864 2 7899999999999878999999999999764
No 273
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-40 Score=346.00 Aligned_cols=220 Identities=28% Similarity=0.449 Sum_probs=190.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 822 (1128)
+++++++++|+.- .|++||||++++||++||+|||||||||++|+|.|+|+|++|+|.++|.||..+++++. |..|+
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 6799999999753 69999999999999999999999999999999999999999999999999999999886 45699
Q ss_pred EEcCCCccccc-cHhhccccCCC------------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~------------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
--+|.+-+|++ ||.||+..... ....+-.++.++ +.++++. .||+...++...+||+|||+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~--A~~~Le~--vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER--ARELLEF--VGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH--HHHHHHH--cCCchhhcchhhcCChhHhHHH
Confidence 99999999976 99999853211 000111222222 3344444 4777778888889999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
.|||||..+|++|+||||.+||.+.....+.+.|++..+ +.||++|-|||+.+.+ ||||+||+.|+++++|+|+|..
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999999999999875 4899999999999998 9999999999999999999998
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
+++
T Consensus 239 ~dp 241 (250)
T COG0411 239 NNP 241 (250)
T ss_pred cCH
Confidence 765
No 274
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=363.84 Aligned_cols=219 Identities=26% Similarity=0.418 Sum_probs=185.0
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~ 814 (1128)
+.|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 46999999999964 3699999999999999999999999999999999999884 89999999999865 344
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCC---C-CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---E-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~-~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
..+|+.++|+||++.+|..|+++|+.+.. . .. ++.+.++++.+++.+.+ .+..+..+.+||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHHHH
Confidence 56788999999999999889999996421 1 11 12244444444443222 1334566678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|++||+++++.. ||||++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 999999999999999999998
Q ss_pred hhcC
Q 001189 966 LSNE 969 (1128)
Q Consensus 966 ~~~~ 969 (1128)
....
T Consensus 255 ~~~~ 258 (272)
T PRK14236 255 FTSP 258 (272)
T ss_pred hcCC
Confidence 7543
No 275
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-40 Score=352.16 Aligned_cols=200 Identities=27% Similarity=0.416 Sum_probs=171.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .|+.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4789999999642 2 39999999999999999999999999999999999999999999999977654 4578999
Q ss_pred EcCCCccccc-cHhhccccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~-------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|.+ |+++|+.+... ..++++.++++..++.+...+. ..+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHHH
Confidence 9999999875 99999974321 1133456666666665544433 357999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+.+|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||||++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999865 37899999999999977 9999999999998764
No 276
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=359.19 Aligned_cols=217 Identities=26% Similarity=0.401 Sum_probs=183.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecC-CCChHH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA-KFGLMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~-~~~~~~ 816 (1128)
.++++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999964 3699999999999999999999999999999999999986 5999999999985 345667
Q ss_pred hhhceEEEcCCCccccccHhhccccCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
+|+.++|+||++.+|..|+++|+.+.. .. .+ +++.++++.+++.+. +.........+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE-------VKDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchh-------hhHHhhcCcccCCHHHHHH
Confidence 788999999999999899999997421 11 11 223334444443322 2234455567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
++|||||+.+|+||||||||++||+.+...+.+.|++..+++|||+|||+++.+.. |||+++|++|++++.|+++++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998777999999999999887 99999999999999999998865
Q ss_pred c
Q 001189 968 N 968 (1128)
Q Consensus 968 ~ 968 (1128)
+
T Consensus 234 ~ 234 (249)
T PRK14253 234 N 234 (249)
T ss_pred C
Confidence 4
No 277
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-39 Score=352.71 Aligned_cols=210 Identities=22% Similarity=0.334 Sum_probs=185.3
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHhhhc
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKI 820 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~~ 820 (1128)
.+.|+.++|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 577999999755 479999999999999999999999999999999999999999999999998876542 235678
Q ss_pred eEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
++|+||++.+|+.|+++|+.......+++..++++..++.+.+..+|.|+++.++....+||||||||++||||++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999998654445566678888888888888899999998888888999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHH--HHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCE
Q 001189 901 ILVLDEATAAVDVRTDALIQK--TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 955 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~--~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~G~ 955 (1128)
+|||||||++||+.+...+.+ .++... .+.|+|++||+++.+..||++++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999998887 455443 3689999999999998899999999884
No 278
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=7.2e-40 Score=377.19 Aligned_cols=205 Identities=25% Similarity=0.352 Sum_probs=172.8
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE----ecCCCChHHh---h-hceEEEcCCCcc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF----DIAKFGLMDL---R-KILGIIPQSPVL 830 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~----~i~~~~~~~~---r-~~i~~v~Q~~~l 830 (1128)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|. ++...+...+ | ++|+|+||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5799999999999999999999999999999999999999999999996 6666665544 3 579999999999
Q ss_pred cc-ccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 831 FS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 831 f~-~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
|. .|+++|+.+.. .... +.+.++++.+++.++. .....+||||||||++|||||+.+|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 59999997431 1122 2344555555554433 3344579999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCchH
Q 001189 903 VLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 974 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 974 (1128)
||||||++||+.+++.+++.|.++.+ ++|+|+|||+++++.. ||||++|++|++++.|++++++.++...|.
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 99999999999999999999988753 7899999999999876 999999999999999999999876544343
No 279
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=361.57 Aligned_cols=218 Identities=26% Similarity=0.406 Sum_probs=184.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 815 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.. ....
T Consensus 7 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 5999999999964 3699999999999999999999999999999999999985 48999999999864 3445
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC----CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~----~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+|+.++|+||++.+|..|+++|+.+.. ... ++.+.++++.+++.+.+. .........|||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQQQ 157 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHHH
Confidence 6788999999999999899999996421 111 123445555555543322 2234556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe-----CCEEEEecC
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-----SGRVLEYDT 961 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~-----~G~i~~~g~ 961 (1128)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|||++||+++++.. ||++++|+ +|++++.|+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 999999999999999999999999999999999999987777999999999999987 99999998 599999999
Q ss_pred hhHHhhcC
Q 001189 962 PEELLSNE 969 (1128)
Q Consensus 962 ~~~l~~~~ 969 (1128)
++++.+.+
T Consensus 238 ~~~~~~~~ 245 (259)
T PRK14260 238 TTQIFSNP 245 (259)
T ss_pred HHHHhcCC
Confidence 99997654
No 280
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=359.54 Aligned_cols=219 Identities=23% Similarity=0.408 Sum_probs=186.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCCC--ChHH
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~--~~~~ 816 (1128)
++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.+||.++... +...
T Consensus 4 l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 4 IEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 789999999964 369999999999999999999999999999999999875 4899999999998653 3556
Q ss_pred hhhceEEEcCCCccccccHhhccccCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
+|+.++|+||++.+|..|+++|+.+.. .. +. +.+.++++.+++.+.+.. ..+....+||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQR 154 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHHH
Confidence 788999999999999899999997421 11 11 234555666665544322 2345567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
++|||||+++|+||||||||++||+.+...+.+.|++..+++|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988778999999999999888 99999999999999999999976
Q ss_pred cCCC
Q 001189 968 NEGS 971 (1128)
Q Consensus 968 ~~~~ 971 (1128)
.+..
T Consensus 235 ~~~~ 238 (250)
T PRK14266 235 NPKD 238 (250)
T ss_pred CCCC
Confidence 5443
No 281
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=363.33 Aligned_cols=219 Identities=25% Similarity=0.430 Sum_probs=183.3
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCC--CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~--~~~ 814 (1128)
..|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 35999999999964 369999999999999999999999999999999999997 689999999999864 344
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCC---CC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
..+|+.++|+||++.+|..|+++|+.+.. .. .++++.++++..++...+ .........+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-------KDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-------HHHHhCCcccCCHHHHHH
Confidence 56788999999999998889999996421 11 123344455554442211 123455567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEE-EEeCCEEEEecChhHHh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRIL-LLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~-vl~~G~i~~~g~~~~l~ 966 (1128)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|||++||+++.+.. |||++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998767899999999999887 99976 56999999999999987
Q ss_pred hcC
Q 001189 967 SNE 969 (1128)
Q Consensus 967 ~~~ 969 (1128)
++.
T Consensus 269 ~~~ 271 (285)
T PRK14254 269 ENP 271 (285)
T ss_pred hCc
Confidence 543
No 282
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-39 Score=354.10 Aligned_cols=208 Identities=27% Similarity=0.389 Sum_probs=178.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++||+++|+.. ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999632 239999999999999999999999999999999999999999999999876544 3568999
Q ss_pred EcCCCccccc-cHhhccccCC-C------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS-E------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~-~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|.+ |+++|+.+.. . ..++++.++++..++.+.+.+.| ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999875 9999997421 1 11334566666666655544433 57999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998653 7899999999999877 999999999999999999998754
No 283
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-40 Score=366.10 Aligned_cols=213 Identities=26% Similarity=0.435 Sum_probs=179.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC--CChHHhhhce
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~--~~~~~~r~~i 821 (1128)
|+++||+++|+.. +++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999633 369999999999999999999999999999999999999999999999999852 2334578899
Q ss_pred EEEcCCC--ccccccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 822 GIIPQSP--VLFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 822 ~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
+|+||++ .+|..|+++|+.+.. .... +++.++++..++. ........+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-----------GFENKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hhhcCChhhCCHHHHHHHHHH
Confidence 9999998 467789999996421 1122 2334444444443 333344568999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||++.+|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998753 7899999999999886 999999999999999999998753
No 284
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=2.5e-39 Score=357.70 Aligned_cols=162 Identities=25% Similarity=0.393 Sum_probs=129.0
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCc-cccccHhhccccCCC-
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV-LFSGTVRFNLDPFSE- 844 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~Tv~~nl~~~~~- 844 (1128)
+|..||++|++||||-||||++++|+|.++|++|. ..+ -+++|=||--. -|++||++-|.-...
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 35567899999999999999999999999999998 111 26889898753 478899876532110
Q ss_pred -CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHH
Q 001189 845 -HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 923 (1128)
Q Consensus 845 -~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l 923 (1128)
..+... ...+. .|..++..+...-.+|||||.||++||-||.+++++++||||++.||.+.+-.+-++|
T Consensus 429 ~~~~s~~---------~~ei~-~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvI 498 (591)
T COG1245 429 AFGSSYF---------KTEIV-KPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVI 498 (591)
T ss_pred hcccchh---------HHhhc-CccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHH
Confidence 111111 11111 2566677777777889999999999999999999999999999999999999999999
Q ss_pred HHHc--CCcEEEEeecCchhhhh-cCEEEEEe
Q 001189 924 REEF--KSCTMLIIAHRLNTIID-CDRILLLD 952 (1128)
Q Consensus 924 ~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~ 952 (1128)
++.. .++|.++|-||+..+.- +||++|++
T Consensus 499 RR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 499 RRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9865 46899999999999987 99999986
No 285
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=9.6e-40 Score=354.51 Aligned_cols=203 Identities=28% Similarity=0.399 Sum_probs=171.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~~ 820 (1128)
|+++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999432 46999999999999999999999999999999999999999999999999998766543 6788
Q ss_pred eEEEcCCCccc-cccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLF-SGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf-~~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
++|+||++.++ ..|+++|+.+.. ..+++ ++.++++..++.+ .......+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-----------KAKNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCCchhCCHHHHHHHHHH
Confidence 99999999875 569999997521 12222 2334444444433 33344468999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
||++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++++.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999864 46899999999999987 99999999999864
No 286
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=361.60 Aligned_cols=222 Identities=22% Similarity=0.359 Sum_probs=187.1
Q ss_pred CCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecC---
Q 001189 739 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA--- 810 (1128)
Q Consensus 739 p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~--- 810 (1128)
|..+.|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|+|.++|.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 34567999999999964 3699999999999999999999999999999999999985 7999999998774
Q ss_pred -CCChHHhhhceEEEcCCCccccccHhhccccCC---CC-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001189 811 -KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 881 (1128)
Q Consensus 811 -~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~L 881 (1128)
......+|+.++|+||++.+|.+|+++|+.+.. .. .++++.++++.+++.+ ++....+....+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccC
Confidence 233456788899999999999889999996421 11 1234455555554432 2234455666789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 882 SgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++++.. ||||++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987767899999999999976 9999999999999999
Q ss_pred ChhHHhhcC
Q 001189 961 TPEELLSNE 969 (1128)
Q Consensus 961 ~~~~l~~~~ 969 (1128)
+++++....
T Consensus 243 ~~~~~~~~~ 251 (265)
T PRK14252 243 ATDTIFIKP 251 (265)
T ss_pred CHHHHHhCC
Confidence 999987543
No 287
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-40 Score=357.48 Aligned_cols=211 Identities=27% Similarity=0.404 Sum_probs=179.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 468999999964 369999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|.+ |+++|+.+.. ... ++++.++++..++.++ ......+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGY-----------ANRKPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999999865 9999986421 111 2234444444444443 4444468999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
+++|++|||||||++||+.+.+.+++.|++..+ ++|||++||+++++.. ||||++|++|++++.|+++++.+..
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 999999999999999999999999999998653 7999999999999877 9999999999999999999887543
No 288
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-40 Score=353.44 Aligned_cols=204 Identities=25% Similarity=0.461 Sum_probs=170.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..|+.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 478999999964 369999999999999999999999999999999999999999999999988753 46778999
Q ss_pred EcCCCccccc-cHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||++.+|.. |+++|+.+.. .....+.. ..+.++++.+ |++........+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998875 9999986431 11111111 1123334332 4444455556789999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||++++|++|++++.|
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999998864 47899999999999877 9999999999998764
No 289
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.8e-39 Score=355.75 Aligned_cols=210 Identities=26% Similarity=0.445 Sum_probs=178.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999876543 4678999
Q ss_pred EcCCCccccc-cHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|.+ |+++|+.+... .+ ++++.++++..++. ........+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-----------GLGDRYPNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-----------hHhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999976 99999964321 11 12233344443333 333444468999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
+++|+++||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999998654 6899999999999877 999999999999999999999754
No 290
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=360.69 Aligned_cols=218 Identities=26% Similarity=0.448 Sum_probs=181.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 815 (1128)
.++++|++++|+.. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 48999999999643 699999999999999999999999999999999999974 69999999999853 3455
Q ss_pred HhhhceEEEcCCCccccc-cHhhccccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 816 DLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~----~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
.+|+.++|+||++.+|.. |+++|+.+.. .... +.+.++++..++.+. +.........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNE-------VKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhHhhCCcccCCHHHH
Confidence 678899999999998874 9999986321 1111 223344444444221 12334555678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe------CCEEEEe
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD------SGRVLEY 959 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~------~G~i~~~ 959 (1128)
||++||||++.+|++|||||||++||+.+...+.+.|++..+++|||+|||+++++.. ||||++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999987667899999999999876 99999997 8999999
Q ss_pred cChhHHhhcC
Q 001189 960 DTPEELLSNE 969 (1128)
Q Consensus 960 g~~~~l~~~~ 969 (1128)
|++++++...
T Consensus 235 ~~~~~~~~~~ 244 (258)
T PRK14241 235 DDTEKIFSNP 244 (258)
T ss_pred CCHHHHHhCc
Confidence 9999987643
No 291
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7.1e-40 Score=353.30 Aligned_cols=204 Identities=26% Similarity=0.447 Sum_probs=169.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC--CChHHhhhce
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~--~~~~~~r~~i 821 (1128)
|+++||+++|+. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...+|+.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999964 369999999999999999999999999999999999999999999999999853 3445678899
Q ss_pred EEEcCCCcccc-ccHhhccccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~----~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
+|+||++.+|. .|+++|+.+.. ....++..+ .+.+.++.+ |++........+||||||||++||||++
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 99999999886 59999996531 112211111 112233332 4444455555789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
++|++|||||||++||+.+.+.+.+.|+++. .++|||++||+++.+.. ||+|++|++|++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999875 47899999999999977 999999999974
No 292
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-39 Score=364.52 Aligned_cols=220 Identities=25% Similarity=0.353 Sum_probs=182.7
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCCC--Ch
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~--~~ 814 (1128)
..|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+.+ |++|+|.++|.++... +.
T Consensus 38 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 38 PHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 35899999999964 369999999999999999999999999999999999865 4999999999998643 23
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
..+|+.++|+||++.+|..|+++|+.+.. .. . ++.+.++++..++.+. +..........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE-------VSDRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc-------hhhHhhCChhhCCHHHH
Confidence 35688899999999999889999997421 11 1 1223344444443211 12233455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++..++|||++||+++++.. ||||++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999877 999999999999999999998
Q ss_pred hhcCC
Q 001189 966 LSNEG 970 (1128)
Q Consensus 966 ~~~~~ 970 (1128)
.+++.
T Consensus 269 ~~~~~ 273 (286)
T PRK14275 269 FTNPK 273 (286)
T ss_pred HhCCC
Confidence 76543
No 293
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-39 Score=360.19 Aligned_cols=219 Identities=23% Similarity=0.412 Sum_probs=184.5
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCC--CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~--~~~ 814 (1128)
..|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 35999999999964 3699999999999999999999999999999999999864 69999999999864 234
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCCC---C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
..+|+.|+|+||++.+|..|+.+|+..... . .++.+.++++.+++.+.+. .........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHHH
Confidence 457889999999999998899999965321 1 1233444555555543222 23345567899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe---------CCEEEE
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLE 958 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~---------~G~i~~ 958 (1128)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. |||+++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777999999999999977 99999997 899999
Q ss_pred ecChhHHhhcC
Q 001189 959 YDTPEELLSNE 969 (1128)
Q Consensus 959 ~g~~~~l~~~~ 969 (1128)
.|+++++...+
T Consensus 250 ~g~~~~~~~~~ 260 (274)
T PRK14265 250 FSPTEQMFGSP 260 (274)
T ss_pred eCCHHHHHhCC
Confidence 99999997654
No 294
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-40 Score=349.54 Aligned_cols=221 Identities=30% Similarity=0.419 Sum_probs=195.2
Q ss_pred cEEEEEEEEEeCCCC----------------------CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 001189 743 SIKFEDVVLRYRPEL----------------------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 800 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~----------------------~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G 800 (1128)
.|+++||++-|+.+. ...++|+||+|+.||++.|.|-||||||||+++|.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 489999999886431 1248999999999999999999999999999999999999999
Q ss_pred eEEECCEecCCCChHHhh----hceEEEcCCCccccc-cHhhccccCCCC-------CHHHHHHHHHHhcHHHHHHHccC
Q 001189 801 RILIDGFDIAKFGLMDLR----KILGIIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSL 868 (1128)
Q Consensus 801 ~I~i~g~~i~~~~~~~~r----~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~-------~~~~i~~~l~~~~l~~~i~~lp~ 868 (1128)
+|+++|.|+..++..+|| +++++|+|...||+. ||.+|..+.-+. ..+...++|+.+||.+|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999988873 469999999999977 999999875321 2344677788888888887777
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-c
Q 001189 869 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-C 945 (1128)
Q Consensus 869 Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~ 945 (1128)
.+||||+|||+.|||||..+|+|||+|||.|+|||--+..+|+-|.++-+ .+||++||||+++..+ -
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 47999999999999999999999999999999999999999999887643 6999999999999877 9
Q ss_pred CEEEEEeCCEEEEecChhHHhhcCCCchH
Q 001189 946 DRILLLDSGRVLEYDTPEELLSNEGSSFS 974 (1128)
Q Consensus 946 D~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 974 (1128)
|||.+|++|+|+..|+|+|++.++...|-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHH
Confidence 99999999999999999999988766554
No 295
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.2e-39 Score=354.08 Aligned_cols=220 Identities=30% Similarity=0.493 Sum_probs=190.4
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|+++.|+. ..+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++..++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKP-DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCC-CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 468999999963 2357999999999999999999999999999999999999999875422 134599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
|++|++++++.||+||+.++.. ....++...++..++.+.++.+|.+..+..+..+.+|||||||||+|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999998643 334555666777788888888988888888888999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHH
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 341 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 341 (1128)
+||||||++||+.+.+.+.+.+... .+|+|+|++||+++++..||++++|++|++++.|+++++....+.|..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 9999999999999999998866544 3589999999999999889999999999999999999987776555543
No 296
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.5e-40 Score=364.83 Aligned_cols=203 Identities=31% Similarity=0.442 Sum_probs=178.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.|+++|++++|++. .+++++||+|++||+++|+|||||||||||++|+|+.+|++|.+.. ..+.||+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999732 2999999999999999999999999999999999999999876532 2346999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC-------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
|+|+..|| ..||+|||.|+... .++++.++++..++.+.++..|. +|||||||||||||||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHHH
Confidence 99999997 67999999998432 24678889999999999998884 7999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+++|+++|||||+|+||++.+..+-..+.+... .|.|+|.||||..++. .+|||.+|++|+|.+.|++.++..++
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999998888776655433 4889999999987754 58999999999999999999998764
No 297
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2e-39 Score=370.16 Aligned_cols=226 Identities=25% Similarity=0.408 Sum_probs=184.7
Q ss_pred cEEEEEEEEEeCC--CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCCCChHHh
Q 001189 743 SIKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~--~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~ 817 (1128)
.++++|+++.|+. +..++|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 4899999999953 2236999999999999999999999999999999999999996 9999999999998887765
Q ss_pred h----hceEEEcCCC--cccc-ccHhhccc----cCCCCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCC
Q 001189 818 R----KILGIIPQSP--VLFS-GTVRFNLD----PFSEHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 882 (1128)
Q Consensus 818 r----~~i~~v~Q~~--~lf~-~Tv~~nl~----~~~~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LS 882 (1128)
| +.|+||||+| .++. .|+.+|+. .+...+.. .+.+.++.+++ +.+. ..++....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 3 4799999999 4554 37777663 22222222 23333343333 2111 23455667899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEe
Q 001189 883 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 883 gGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
||||||++|||||+.+|++||+||||++||+.+...|.+.|+++.+ +.|+|+||||++.+.. ||||+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 7899999999999986 999999999999999
Q ss_pred cChhHHhhcCCCchHHH
Q 001189 960 DTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 960 g~~~~l~~~~~~~~~~~ 976 (1128)
|+++++.+++...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998766556543
No 298
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=371.33 Aligned_cols=225 Identities=21% Similarity=0.362 Sum_probs=182.8
Q ss_pred cEEEEEEEEEeCC--CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEecCCCChHH
Q 001189 743 SIKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~--~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~----p~~G~I~i~g~~i~~~~~~~ 816 (1128)
.|+++|++++|+. +...+|+||||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.++.+++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3899999999953 22369999999999999999999999999999999999986 58999999999998887765
Q ss_pred hh----hceEEEcCCCc--ccc-ccHhhcccc----C--CC----C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhc
Q 001189 817 LR----KILGIIPQSPV--LFS-GTVRFNLDP----F--SE----H---SDADLWEALERAHLKDAIRRNSLGLDAQVSE 876 (1128)
Q Consensus 817 ~r----~~i~~v~Q~~~--lf~-~Tv~~nl~~----~--~~----~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e 876 (1128)
++ +.|+||||+|. ++. .||.+|+.. + .. . ..+++.++++.+++.+.. .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 53 47999999996 333 388888742 0 00 0 012344555555553210 12234
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeC
Q 001189 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDS 953 (1128)
Q Consensus 877 ~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~ 953 (1128)
....||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 4468999999999999999999999999999999999999999999998754 7899999999999987 999999999
Q ss_pred CEEEEecChhHHhhcCCCchHH
Q 001189 954 GRVLEYDTPEELLSNEGSSFSK 975 (1128)
Q Consensus 954 G~i~~~g~~~~l~~~~~~~~~~ 975 (1128)
|+|++.|+++++.+++...|.+
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHH
Confidence 9999999999998765544543
No 299
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-39 Score=359.56 Aligned_cols=218 Identities=28% Similarity=0.423 Sum_probs=183.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCCC-hHH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG-LMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~~-~~~ 816 (1128)
.|+++||+++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4899999999964 3799999999999999999999999999999999999986 6999999999987653 346
Q ss_pred hhhceEEEcCCCccccccHhhccccCC----CCCHHHHH----HHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 817 LRKILGIIPQSPVLFSGTVRFNLDPFS----EHSDADLW----EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~Tv~~nl~~~~----~~~~~~i~----~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
+|+.++|+||++.+|..|+++|+.+.. ..++.+.. +.++..++.+ .+++.......+||||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD-------AVKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhCCcccCCHHHHHH
Confidence 788999999999999899999997421 12333322 2233333221 12234456677899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++++.. |||+++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999877 99999999999999999999976
Q ss_pred cC
Q 001189 968 NE 969 (1128)
Q Consensus 968 ~~ 969 (1128)
.+
T Consensus 252 ~~ 253 (276)
T PRK14271 252 SP 253 (276)
T ss_pred Cc
Confidence 54
No 300
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.7e-39 Score=357.07 Aligned_cols=219 Identities=24% Similarity=0.400 Sum_probs=181.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe-----cCCCChHHh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~-----i~~~~~~~~ 817 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ +...+...+
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999964 369999999999999999999999999999999999999999999999998 777665443
Q ss_pred ----hhceEEEcCCCc--ccc-ccHhhcccc----CCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001189 818 ----RKILGIIPQSPV--LFS-GTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 885 (1128)
Q Consensus 818 ----r~~i~~v~Q~~~--lf~-~Tv~~nl~~----~~~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGq 885 (1128)
++.++|+||++. ++. .|+.+|+.. +......++. ..+.++++.+ |++ +..+..+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGGM 156 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHHH
Confidence 557999999984 333 478888742 1111111111 1234555554 343 45667778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988653 7899999999999986 999999999999999999
Q ss_pred hHHhhcCC
Q 001189 963 EELLSNEG 970 (1128)
Q Consensus 963 ~~l~~~~~ 970 (1128)
+++..++.
T Consensus 237 ~~~~~~~~ 244 (258)
T PRK11701 237 DQVLDDPQ 244 (258)
T ss_pred HHHhcCCC
Confidence 99876543
No 301
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.6e-39 Score=360.65 Aligned_cols=216 Identities=24% Similarity=0.367 Sum_probs=179.2
Q ss_pred cEEEEEEEEEeCCC-------CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001189 743 SIKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~-------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~ 815 (1128)
.|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999521 23699999999999999999999999999999999999999999999999998765555
Q ss_pred HhhhceEEEcCCCc--cccc-cHhhccccC----CCCC----HHHHHHHHHHhcHH-HHHHHccCCcchhhhcCCCCCCh
Q 001189 816 DLRKILGIIPQSPV--LFSG-TVRFNLDPF----SEHS----DADLWEALERAHLK-DAIRRNSLGLDAQVSEAGENFSV 883 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~--lf~~-Tv~~nl~~~----~~~~----~~~i~~~l~~~~l~-~~i~~lp~Gldt~v~e~g~~LSg 883 (1128)
..++.++|+||++. ++.. |+.+|+... .... ++++.++++.+++. +. ......+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH-----------ASYYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH-----------HhcCchhcCH
Confidence 55678999999985 4443 888887531 1111 23345555555552 22 2223457999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 884 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 884 Gqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998653 7899999999999987 9999999999999999
Q ss_pred ChhHHhhcC
Q 001189 961 TPEELLSNE 969 (1128)
Q Consensus 961 ~~~~l~~~~ 969 (1128)
+++++...+
T Consensus 233 ~~~~~~~~~ 241 (267)
T PRK15112 233 STADVLASP 241 (267)
T ss_pred CHHHHhcCC
Confidence 999998654
No 302
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.7e-39 Score=353.09 Aligned_cols=208 Identities=24% Similarity=0.339 Sum_probs=177.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++..+++.++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4999999999964 36999999999999999999999999999999999999999999999999998888877888999
Q ss_pred EEcCCCccccccHhhccccCC----CC-CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 823 IIPQSPVLFSGTVRFNLDPFS----EH-SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~----~~-~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~lArall 896 (1128)
|+||++.+|..|+++|+.+.. .. .++++.+ .++.+ |+. +.......+||||||||++|||||+
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLD---------DLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHH---------HHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 999999999889999996421 11 1122233 33332 342 3445666789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEe-CCEEEEecChh
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLD-SGRVLEYDTPE 963 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~-~G~i~~~g~~~ 963 (1128)
++|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+..||++++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999999865 3789999999999998899999995 66667777764
No 303
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=358.11 Aligned_cols=218 Identities=23% Similarity=0.340 Sum_probs=186.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 815 (1128)
.+.+++++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3899999999964 3699999999999999999999999999999999999987 799999999998643 334
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
.+|+.++|+||++.+|..|+.+|+.+... ...+++.++++.+++.+.+. ...++...+||||||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-------DKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHHHH
Confidence 56788999999999998899999975321 11234566666666543332 223455678999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEe--------CCEEEEec
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD--------SGRVLEYD 960 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~--------~G~i~~~g 960 (1128)
+|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++++.. ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999998777899999999999877 99999996 89999999
Q ss_pred ChhHHhhcC
Q 001189 961 TPEELLSNE 969 (1128)
Q Consensus 961 ~~~~l~~~~ 969 (1128)
+++++.+..
T Consensus 239 ~~~~~~~~~ 247 (261)
T PRK14263 239 PTAQIFQNP 247 (261)
T ss_pred CHHHHHhCC
Confidence 999988654
No 304
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-39 Score=356.12 Aligned_cols=219 Identities=26% Similarity=0.411 Sum_probs=181.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEecCC--CChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-----~G~I~i~g~~i~~--~~~~ 815 (1128)
.++++|++++|+. +++++|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 3889999999964 36999999999999999999999999999999999999874 8999999999864 3345
Q ss_pred HhhhceEEEcCCCccccc-cHhhccccCC---CC-CHHHHHH----HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 816 DLRKILGIIPQSPVLFSG-TVRFNLDPFS---EH-SDADLWE----ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~-~~~~i~~----~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
.+|+.++|+||++.+|.. |+.+|+.... .. .+++..+ .++..++.+. +.........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE-------VKDRLKTPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh-------hhhhhcCCcccCCHHHH
Confidence 678889999999998875 9999996321 11 2222222 2222322211 12223344568999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999987 999999999999999999999
Q ss_pred hhcCC
Q 001189 966 LSNEG 970 (1128)
Q Consensus 966 ~~~~~ 970 (1128)
+.++.
T Consensus 235 ~~~~~ 239 (252)
T PRK14272 235 FTNPR 239 (252)
T ss_pred HhCcC
Confidence 86543
No 305
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.7e-38 Score=354.38 Aligned_cols=237 Identities=35% Similarity=0.628 Sum_probs=198.9
Q ss_pred HHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 95 RMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 95 Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
.+.+.|..+.+... ..+.+...+.|+++|+++.+ +++|+++||+|++|++++|+|+||||||||+++|+|+++|
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p 89 (282)
T cd03291 16 GFGELLEKAKQENN-DRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred HHHHHHhccccccc-ccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45566665443211 11222344569999999852 4699999999999999999999999999999999999999
Q ss_pred CCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 175 VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 175 ~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
++|. +.+.+.|+|++|++++++.||+||+.++......++...++.+++.+.++.++.+.++.+++.+..||||||||+
T Consensus 90 ~~G~-I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv 168 (282)
T cd03291 90 SEGK-IKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI 168 (282)
T ss_pred CCcE-EEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHH
Confidence 8765 556778999999999998999999998754444566677788889888999999888889889999999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
+|||||+.+|++|||||||++||+.+.+.+.+.++....+++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 169 ~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999998887655433457899999999999988999999999999999999988764
Q ss_pred chHH
Q 001189 335 GELF 338 (1128)
Q Consensus 335 ~~~~ 338 (1128)
...+
T Consensus 249 ~~~~ 252 (282)
T cd03291 249 RPDF 252 (282)
T ss_pred chHH
Confidence 4333
No 306
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2e-39 Score=357.00 Aligned_cols=215 Identities=22% Similarity=0.287 Sum_probs=174.3
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEecCCCChHHh-hhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDL-RKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~-r~~ 820 (1128)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999964 36999999999999999999999999999999999994 7999999999999988776554 445
Q ss_pred eEEEcCCCccccc-cHhhccccCCC----------CCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCC-CCChhHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFSE----------HSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGE-NFSVGQRQ 887 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~~----------~~~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~-~LSgGqrq 887 (1128)
++|+||++.+|.+ |+++|+..... ....+.. ..+.+.++.+ |++. ....... .|||||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHHH
Confidence 9999999998876 89998853210 0111111 1122333332 3432 2233333 59999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh--cCEEEEEeCCEEEEecChhH
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~--~D~i~vl~~G~i~~~g~~~~ 964 (1128)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999875 47899999999999986 79999999999999999886
Q ss_pred Hhh
Q 001189 965 LLS 967 (1128)
Q Consensus 965 l~~ 967 (1128)
+..
T Consensus 232 ~~~ 234 (243)
T TIGR01978 232 AKE 234 (243)
T ss_pred hcc
Confidence 653
No 307
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-39 Score=357.58 Aligned_cols=220 Identities=27% Similarity=0.418 Sum_probs=184.6
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CceEEECCEecCC--CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-----~G~I~i~g~~i~~--~~~ 814 (1128)
+.|+++|++++|+. +.+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 35999999999964 36999999999999999999999999999999999999985 8999999999853 344
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
..+|+.++|+||++.+|..|+++|+.+.. .. . ++.+.++++..++.+++. ...+.....||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHHH
Confidence 56788899999999999899999996421 11 1 123444555555433222 234556678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC-----CEEEE
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS-----GRVLE 958 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~-----G~i~~ 958 (1128)
||++|||||+++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++++.. ||||++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999853 47999999999999987 999999999 99999
Q ss_pred ecChhHHhhcCC
Q 001189 959 YDTPEELLSNEG 970 (1128)
Q Consensus 959 ~g~~~~l~~~~~ 970 (1128)
.|+++++...+.
T Consensus 237 ~~~~~~~~~~~~ 248 (261)
T PRK14258 237 FGLTKKIFNSPH 248 (261)
T ss_pred eCCHHHHHhCCC
Confidence 999999976543
No 308
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-40 Score=366.56 Aligned_cols=204 Identities=34% Similarity=0.491 Sum_probs=178.9
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 187 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 187 (1128)
+.++++|++++|+ +..+++|+||+|++||+++++|||||||||||++|+|+..|++|.+.. .++.||
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999997 368999999999999999999999999999999999999999875432 245699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC----CC-H---HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFGSA----FE-P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g~~----~~-~---~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
+|+|+..|| +.||+|||.||.. .. . +++.++++..+|.+..+..| ..|||||+|||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 999999998 7899999999954 12 2 47788888888888776666 589999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccc-hhcCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
||..+|++||||||+|+||.+.+.++-..+.+.. ..|.|.|+||||.++ +..+|||++|++|+|...|+++++...+
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 9999999999999999999999999887776543 349999999999876 5678999999999999999999998764
No 309
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=349.84 Aligned_cols=203 Identities=29% Similarity=0.524 Sum_probs=179.0
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce-------------eecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA-------------VIRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~-------------~~~~~ 185 (1128)
.+.++|++|+|+++ .++|+++||++++|+.++|+|+||||||||+++|.|+++|++|.+. .++++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 58899999999854 6899999999999999999999999999999999999999987642 14567
Q ss_pred EEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
||||+|+| .+|..||.|.|.||.. .+. +++.++++.+++.+..+..| .+|||||||||||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 6889999999999842 232 45677888999988876666 4899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|.+|+.+|+++|||||||+||+...+.+++.+.+.... |+|+|++|||++.+.. ||++++|++|+++.+|++.++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999876655444 6899999999999876 999999999999999998887655
No 310
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.3e-39 Score=358.18 Aligned_cols=210 Identities=22% Similarity=0.358 Sum_probs=177.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCCC-----Ch
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKF-----GL 814 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~---~G~I~i~g~~i~~~-----~~ 814 (1128)
.|+++||+++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999964 37999999999999999999999999999999999999986 49999999998653 23
Q ss_pred HHhhhceEEEcCCCccccc-cHhhccccCCC------------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCC
Q 001189 815 MDLRKILGIIPQSPVLFSG-TVRFNLDPFSE------------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAG 878 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~------------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g 878 (1128)
..+|+.++|+||++.+|.. |+++|+.+... .. ..++.++++..+ ++.......
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVG-----------MVHFAHQRV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcC-----------CHHHHhCCc
Confidence 4567889999999988874 99999964211 00 122333444433 433344555
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001189 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGR 955 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~ 955 (1128)
.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 7899999999999999999999999999999999999999999999875 37899999999999776 99999999999
Q ss_pred EEEecChhHH
Q 001189 956 VLEYDTPEEL 965 (1128)
Q Consensus 956 i~~~g~~~~l 965 (1128)
+++.|+++++
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999999986
No 311
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-39 Score=357.90 Aligned_cols=211 Identities=26% Similarity=0.388 Sum_probs=181.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--------CceEEECCEecCCCChH
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--------RGRILIDGFDIAKFGLM 815 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~--------~G~I~i~g~~i~~~~~~ 815 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 36999999999999999999999999999999999999998 99999999999887777
Q ss_pred HhhhceEEEcCCCc-cccccHhhccccCCC--------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh
Q 001189 816 DLRKILGIIPQSPV-LFSGTVRFNLDPFSE--------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 883 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~-lf~~Tv~~nl~~~~~--------~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSg 883 (1128)
.+++.++|+||++. +|..|+++|+.+... .. ++.+.++++.. |+++..+....+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-----------GATALVGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCH
Confidence 78888999999986 567899999964311 01 11233333333 555556666678999
Q ss_pred hHHHHHHHHHHhc---------cCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEE
Q 001189 884 GQRQLLSLSRALL---------RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLL 951 (1128)
Q Consensus 884 Gqrqrl~lArall---------~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl 951 (1128)
|||||++|||||+ .+|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999998653 6899999999999976 9999999
Q ss_pred eCCEEEEecChhHHhh
Q 001189 952 DSGRVLEYDTPEELLS 967 (1128)
Q Consensus 952 ~~G~i~~~g~~~~l~~ 967 (1128)
++|++++.|+++++..
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999988864
No 312
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.8e-39 Score=340.84 Aligned_cols=193 Identities=29% Similarity=0.446 Sum_probs=160.7
Q ss_pred EEEEeEEEEeCCCCC-CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------e
Q 001189 120 ISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 182 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~-~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~ 182 (1128)
++++|+++.|..+.. ..+|+++||+|++||+++|+|||||||||||++|.|+..|++|.+.. .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 578999999974322 46999999999999999999999999999999999999998775322 2
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcC----CCCC---HHHHHHHHHHhCcHHHHh-cCCCCCcccccCCCCCCChHHHHH
Q 001189 183 RGTVAYVPQVSWIF-NATVRDNILFG----SAFE---PARYEKAIDVTSLQHDLD-LLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~-~~Tv~eni~~g----~~~~---~~~~~~~~~~~~l~~~~~-~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
+..||||+|+..|. +.||+|||.+. .... .++....++..++.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 34699999999885 78999999853 2111 334555566667765554 444 5899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEe
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVK 323 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 323 (1128)
|||||||+.+|++++.||||++||.++.+.+++.+..... .|+|+|+||||+.....|||++.|.+|++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 9999999999999999999999999999999987655543 489999999999999999999999999854
No 313
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=371.91 Aligned_cols=211 Identities=23% Similarity=0.395 Sum_probs=179.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHHhhh
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRK 819 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~ 819 (1128)
|++ |++++|+.. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 667 999999642 23 89999999999999999999999999999999999999999999998653 2334678
Q ss_pred ceEEEcCCCccccc-cHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+++|+||++.+|.. |+++|+.+.. ...++++.++++..++.+.. .....+||||||||++|||||+.
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLL-----------DRYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHHHHHHc
Confidence 89999999999965 9999997532 22334555666665554443 34446899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
+|++|||||||++||+.+++.+.+.|++..+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++..++.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 9999999999999999999999999998653 6899999999999887 99999999999999999999987654
No 314
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-39 Score=351.83 Aligned_cols=209 Identities=27% Similarity=0.446 Sum_probs=178.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999963 38999999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EcCCCcccc-ccHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|. .|+++|+.+.. ..+ ++++.++++..++.+++ .....+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLL-----------NRKPETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHH-----------hcCcccCCHHHHHHHHHHHHH
Confidence 999999885 59999996321 111 22344455555554443 344468999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
+++|++|+|||||++||+.+.+.+++.|++... ++|+|++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999998653 7999999999999887 999999999999999999988764
No 315
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.2e-39 Score=347.21 Aligned_cols=201 Identities=24% Similarity=0.386 Sum_probs=172.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
++++||+++|+. .++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..|+.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999952 568999999999999999999999999999999999999999999999987643 36778999
Q ss_pred EcCCCccccc-cHhhccccC-CC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPF-SE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~-~~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||+|.+|.. |+++|+.+. .. ..+.++.++++..++.+...+.| .+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999998875 999998632 11 11234555666666655544433 57999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++++.. ||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998653 7899999999999876 99999999999998874
No 316
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-39 Score=355.34 Aligned_cols=219 Identities=26% Similarity=0.448 Sum_probs=182.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------EecCCCChHH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG------FDIAKFGLMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g------~~i~~~~~~~ 816 (1128)
.|.++|++++|+. +++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++| .++...+...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4999999999964 3699999999999999999999999999999999999999997666665 6666666677
Q ss_pred hhhceEEEcCCCccccc-cHhhccccCC---CC-CHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 817 LRKILGIIPQSPVLFSG-TVRFNLDPFS---EH-SDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~-~~~~----i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
+|+.++|+||+|.+|.+ |+++|+.+.. .. .+++ +.++++..++.+.+ ..........||+||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHHH
Confidence 88899999999999876 9999997421 11 1222 23333433332211 12334556789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++.+|++|||||||++||+.++..+.+.|++..+++|||+|||+++++.. ||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999966 9999999999999999999998
Q ss_pred hcCC
Q 001189 967 SNEG 970 (1128)
Q Consensus 967 ~~~~ 970 (1128)
+.+.
T Consensus 241 ~~~~ 244 (257)
T PRK14246 241 TSPK 244 (257)
T ss_pred hCCC
Confidence 6543
No 317
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-39 Score=362.20 Aligned_cols=219 Identities=27% Similarity=0.461 Sum_probs=184.2
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecCCC--C
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--G 813 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-----p~~G~I~i~g~~i~~~--~ 813 (1128)
+..|+++|++++|+. .++|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 346999999999964 369999999999999999999999999999999999986 6899999999998653 3
Q ss_pred hHHhhhceEEEcCCCccccccHhhccccCCC---------------C-----CHHHHHHHHHHhcHHHHHHHccCCcchh
Q 001189 814 LMDLRKILGIIPQSPVLFSGTVRFNLDPFSE---------------H-----SDADLWEALERAHLKDAIRRNSLGLDAQ 873 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~---------------~-----~~~~i~~~l~~~~l~~~i~~lp~Gldt~ 873 (1128)
...+|+.++|+||++.+|..|+++|+.+... . .++.+.++++.+++. .++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW-------DEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc-------hhhhHH
Confidence 4567889999999999998999999974210 0 012233344443332 233445
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEE-EEE
Q 001189 874 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRI-LLL 951 (1128)
Q Consensus 874 v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i-~vl 951 (1128)
......+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 56667889999999999999999999999999999999999999999999998777899999999999877 9997 567
Q ss_pred eCCEEEEecChhHHhhc
Q 001189 952 DSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 952 ~~G~i~~~g~~~~l~~~ 968 (1128)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999998754
No 318
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-39 Score=320.75 Aligned_cols=200 Identities=27% Similarity=0.465 Sum_probs=172.6
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
+.++++.|+|... ==..+++|++||++||+||||||||||+++|+|+..|.+|.+.. ..+.|+++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 5678899999632 23678999999999999999999999999999999999876543 23469999
Q ss_pred ecCCCCC-cccHHHHHhcCCC-------CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 190 PQVSWIF-NATVRDNILFGSA-------FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 190 ~Q~~~l~-~~Tv~eni~~g~~-------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+|+..|| ..||.+||-+|.. .+.++++.++...++....+++|. +||||||||+||||+|+
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 9999999 6899999999943 235678888999999999999995 79999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHcc-ccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhcc
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
++.+|++||||||+|||.-+......+... ..++.|++||||.++.+.. +|+++++++|+|.++|+.+++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 999999999999999999988877644433 2468999999999998775 7999999999999999988877553
No 319
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-39 Score=354.72 Aligned_cols=219 Identities=24% Similarity=0.375 Sum_probs=182.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCceEEECCEecCCC--ChH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAKF--GLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~--p---~~G~I~i~g~~i~~~--~~~ 815 (1128)
.|+++||+++|+. +++|+|+||+|.+||++||+|+||||||||+++|+|+++ | ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999964 469999999999999999999999999999999999975 5 599999999998642 344
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.+++.++|+||++.+|..|+++|+.+.. .. . ++++.++++.+++.. ++.........+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-------EVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-------chhhHHhcCcccCCHHHHH
Confidence 5678899999999999889999986421 11 1 122333444443321 2223445566789999999
Q ss_pred HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 888 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999876 9999999999999999999987
Q ss_pred hcCC
Q 001189 967 SNEG 970 (1128)
Q Consensus 967 ~~~~ 970 (1128)
..+.
T Consensus 236 ~~~~ 239 (252)
T PRK14255 236 LNPK 239 (252)
T ss_pred cCCC
Confidence 6543
No 320
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-39 Score=355.10 Aligned_cols=202 Identities=23% Similarity=0.340 Sum_probs=170.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 3699999999999999999999999999999999999999999999999988642 246899
Q ss_pred EcCCCcccc-ccHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+||++.+|. .|+++|+.+.. .... +++.+.++..+ ++........+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVG-----------LEGAEKRYIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhHhhCChhhCCHHHHHHHHHHHHH
Confidence 999999886 59999996421 1121 22334444444 33334445568999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEe--CCEEEEecChh
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 963 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~--~G~i~~~g~~~ 963 (1128)
+.+|++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999863 37999999999999877 99999998 59999987754
No 321
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=347.07 Aligned_cols=203 Identities=31% Similarity=0.460 Sum_probs=174.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.|.++|+++.|+. .++++||||+|+.||.+|+.|||||||||||++|+|+..|+.|.+.. ..++
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4788999999974 57999999999999999999999999999999999999999876432 1236
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCCC---------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSAF---------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~~---------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
||||+|+..|| ..||.+||.||... ...++.+.++.|+|...-+..| ..||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 99999999997 79999999999521 1345667788888887777766 489999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||..+|++||||||+++||++.++.+-..+.+...+ |.|+|+||||.++. +.||||++|++|+|...|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999988887665544333 89999999999885 5689999999999999999999876
Q ss_pred cc
Q 001189 334 NG 335 (1128)
Q Consensus 334 ~~ 335 (1128)
.+
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 64
No 322
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1e-38 Score=346.75 Aligned_cols=204 Identities=25% Similarity=0.402 Sum_probs=174.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
++++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999875321 357999
Q ss_pred EcCCCcccc-ccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||++.+|. .|+++|+.+.. ...+.++.++++..++.+.. .....+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG-----------KKKAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 59999986421 22345566666665555433 3334579999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~ 964 (1128)
++|||||||++||+.+.+.+++.|++.. +++|+|++||+++.+.. ||||++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999865 47899999999999876 99999999999999998764
No 323
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-38 Score=332.03 Aligned_cols=171 Identities=50% Similarity=0.798 Sum_probs=160.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+....++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999996532369999999999999999999999999999999999999999999999999988887788889999
Q ss_pred EcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
+||++.+|..|+.+|+ ||||||||++||||++.+|++||
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988998886 99999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCE
Q 001189 904 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 955 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~ 955 (1128)
|||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998877799999999999998899999999985
No 324
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.8e-38 Score=351.56 Aligned_cols=215 Identities=26% Similarity=0.396 Sum_probs=177.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC----CCceEEECCEecCCCChHHhh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p----~~G~I~i~g~~i~~~~~~~~r 818 (1128)
.|+++|++++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... ...+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 48999999999 3 3699999999999999999999999999999999999999 999999999998632 2234
Q ss_pred hceEEEcCCCc-ccc--ccHhhcccc----CC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPV-LFS--GTVRFNLDP----FS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~-lf~--~Tv~~nl~~----~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
+.++|+||++. .|. .|+.+|+.. .. ...++++.+.++.+++.+. ++.++....+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 343 377776532 11 1223445555555444321 12455666789999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998643 7899999999999876 99999999999999999999976
Q ss_pred cCC
Q 001189 968 NEG 970 (1128)
Q Consensus 968 ~~~ 970 (1128)
...
T Consensus 231 ~~~ 233 (254)
T PRK10418 231 APK 233 (254)
T ss_pred CCC
Confidence 543
No 325
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9.1e-39 Score=369.22 Aligned_cols=209 Identities=23% Similarity=0.367 Sum_probs=176.3
Q ss_pred EEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHHhhhceEE
Q 001189 748 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDLRKILGI 823 (1128)
Q Consensus 748 ~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~r~~i~~ 823 (1128)
|++++|+.. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....|+.++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 35 999999999999999999999999999999999999999999999986532 2346778999
Q ss_pred EcCCCccccc-cHhhccccCCC-CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSE-HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~-~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+||++.+|.. |+++|+.+... .. ++++.+.++.. |++........+||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL-----------GIGHLLGRLPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999975 99999975321 11 11233344443 44444555557899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++...+..
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 225 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCc
Confidence 9999999999999999999999999998653 7899999999999877 999999999999999999999876543
No 326
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4e-38 Score=349.22 Aligned_cols=223 Identities=23% Similarity=0.367 Sum_probs=193.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|++++|+.. .+++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 18 ~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 18 GEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred ceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 469999999999742 357999999999999999999999999999999999999999875432 2346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
|+|++|+|++|+.|++||+........+++..+++..++.+.++.+|.++++.+++.+.+||||||||++|||||+.+|+
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997654444556777888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc-hHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG-ELFQKLM 342 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~ 342 (1128)
++||||||++||+.+.+.+++.+.. ..++.|+|++||+++.+..||+|++|++|++++.|+++++.... +.++.++
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 9999999999999999988875543 34589999999999999889999999999999999999887653 3454443
No 327
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-38 Score=346.18 Aligned_cols=218 Identities=32% Similarity=0.569 Sum_probs=188.9
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|++++|+. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. ++..++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999963 257999999999999999999999999999999999999999875432 123599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
|++|++++++.|++||+.++.. .........++.+++.+.+..+|.+.++.+..+..+||||||||++|||||+.+|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998743 344556667778889888899999999989888999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHH
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 340 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 340 (1128)
+||||||++||+.+.+.+.+.+..... |+|+|++||+++.+..||++++|++|++++.|+.+++......++.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~ 231 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAE 231 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHH
Confidence 999999999999999999886654433 8999999999999988999999999999999998887765544443
No 328
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-38 Score=339.53 Aligned_cols=201 Identities=55% Similarity=0.978 Sum_probs=179.4
Q ss_pred EEEEeEEEEeCCCCC--CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCc
Q 001189 120 ISIRNGYFSWDSKAE--RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 197 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~--~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~ 197 (1128)
++++|+++.|+...+ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+ .+.++|+|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i-~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV-SVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE-EEcCEEEEEecCchhcc
Confidence 468999999974321 379999999999999999999999999999999999999998754 56778999999999999
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcC
Q 001189 198 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 277 (1128)
Q Consensus 198 ~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD 277 (1128)
.|++||+.++..++.++..++.+.+++.+.++.+|.|+++.++....+||||||||++|||||+.+|+++||||||++||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999986666666777888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcc-ccCCcEEEEEccCccchhcCCEEEEEeCCe
Q 001189 278 AHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGM 321 (1128)
Q Consensus 278 ~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 321 (1128)
+.+.+++++.++.. ..+|+|+|++||+++.+..||++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999998865543 334799999999999988899999999984
No 329
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4e-39 Score=320.89 Aligned_cols=195 Identities=25% Similarity=0.452 Sum_probs=172.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
.|+|+||++.|+.+ +++|+||||+|++||++.|+||||||||||+|+|.++..|+.|.+.. +|
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 37899999999853 68999999999999999999999999999999999999999886432 56
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 184 GTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
++||+|+||.-|. +.||.||+.|.-. .. .+++.+++++.+|.+....+|. .|||||+||++
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRva 147 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVA 147 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHH
Confidence 7899999999875 7899999998632 11 3567788999999999999994 79999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcC-CEEEEEeCCeEeeec
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 326 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~~g 326 (1128)
||||++.+|++||-||||.+|||..+..|++.+......|.||++.||+.+.+..+ -|++.+++|+++...
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999986555567799999999999999876 899999999998643
No 330
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.1e-38 Score=346.49 Aligned_cols=215 Identities=32% Similarity=0.535 Sum_probs=186.4
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|+++.|+...++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997433457999999999999999999999999999999999999999875421 123599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
|++|++.+++.||+||+.++.. ...++....++.+++.+.+..+|.+.++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988899999998643 234555666777788888888998888888888899999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+||||||++||+.+.+.+++.+.... +|+|+|++||+++++..||++++|++|++++.|+.+++....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 99999999999999999998665444 789999999999999889999999999999999988876543
No 331
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-38 Score=345.84 Aligned_cols=215 Identities=33% Similarity=0.540 Sum_probs=187.0
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|++++|+.. ++++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999642 247999999999999999999999999999999999999999875422 134599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
|++|++++++.||+||+.++.. ....++.+.++.+++.+.++.+|.+..+..+....+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998743 344566677778888899999988888888888999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcch
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 336 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 336 (1128)
+||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+..||++++|++|++++.|+.+++.....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERL-MKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 9999999999999999998865443 45899999999999998899999999999999999888765543
No 332
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1e-38 Score=345.97 Aligned_cols=202 Identities=26% Similarity=0.388 Sum_probs=170.5
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH---Hhh
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r 818 (1128)
++++|+++.|++. .+++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...++. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999642 14699999999999999999999999999999999999999999999999999776643 357
Q ss_pred hceEEEcCCCcccc-ccHhhccccCC----CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001189 819 KILGIIPQSPVLFS-GTVRFNLDPFS----EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 889 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~-~Tv~~nl~~~~----~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl 889 (1128)
+.++|+||++.+|. .|+.+|+.+.. ....+ ++.++++..+ ++........+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVG-----------LGDHLDYYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC-----------ChhhhhcChhhCCHHHHHHH
Confidence 88999999999887 59999997432 11222 2333444444 44444445568999999999
Q ss_pred HHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEE
Q 001189 890 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 956 (1128)
Q Consensus 890 ~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i 956 (1128)
+||||++++|++|||||||++||+++...+.+.|++..+ ++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988753 7999999999997656999999999986
No 333
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=1.1e-37 Score=391.30 Aligned_cols=102 Identities=27% Similarity=0.450 Sum_probs=92.5
Q ss_pred Ccch-hhhcCCCCCChhHHHHHHHHHHhccCC---CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhh
Q 001189 869 GLDA-QVSEAGENFSVGQRQLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 943 (1128)
Q Consensus 869 Gldt-~v~e~g~~LSgGqrqrl~lArall~~p---~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~ 943 (1128)
|++. ..+....+||||||||+.|||+|+++| +++||||||++||+.+.+.+.+.|+++. ++.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5544 357777899999999999999999999 9999999999999999999999999875 4789999999999998
Q ss_pred hcCEEEEE------eCCEEEEecChhHHhhcCC
Q 001189 944 DCDRILLL------DSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 944 ~~D~i~vl------~~G~i~~~g~~~~l~~~~~ 970 (1128)
.||+|++| ++|+|++.|+++++.+.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 89999999 6999999999999987654
No 334
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.1e-38 Score=342.49 Aligned_cols=207 Identities=27% Similarity=0.420 Sum_probs=184.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+.. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++..+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 37899999999742 357999999999999999999999999999999999999999875421 24469
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 187 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
+|++|++.+++.|++||+.+......++..++++..++.+.+..+|.|+.+..+..+.+||||||||++|||||+.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655566777888888999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecC
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 327 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 327 (1128)
+||||||++||+.+++.+++.+... .+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREA-FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999998865443 35689999999999998899999999999988765
No 335
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-38 Score=343.99 Aligned_cols=212 Identities=29% Similarity=0.511 Sum_probs=186.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4789999999963 246999999999999999999999999999999999999998875422 23459
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+|++|+++++..|++||+.++.. ....++..+++.+++.+.++.+|.+..+.++....+||||||||++|||||+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999998743 34456677788889999999999888888888899999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhh
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
++||||||++||+.+.+.+++.+... .+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999998865543 45899999999999998899999999999999988877653
No 336
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.6e-38 Score=351.42 Aligned_cols=218 Identities=24% Similarity=0.380 Sum_probs=181.7
Q ss_pred EEEEEEEEEeCCC-------CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH-
Q 001189 744 IKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM- 815 (1128)
Q Consensus 744 i~~~~v~~~y~~~-------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~- 815 (1128)
|+++||+++|+.. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8999999999631 24799999999999999999999999999999999999999999999999999876653
Q ss_pred --HhhhceEEEcCCCc--cc-cccHhhccccC----CCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhH
Q 001189 816 --DLRKILGIIPQSPV--LF-SGTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQ 885 (1128)
Q Consensus 816 --~~r~~i~~v~Q~~~--lf-~~Tv~~nl~~~----~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~LSgGq 885 (1128)
.+|+.++|+||++. ++ ..|+++|+.+. ...... .....+.+.++.+ |+++ ..+.....|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 46788999999983 44 35899987431 011111 1112334455543 5653 4566778899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
|||++|||||+.+|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999998653 7899999999999987 999999999999999999
Q ss_pred hHHhhc
Q 001189 963 EELLSN 968 (1128)
Q Consensus 963 ~~l~~~ 968 (1128)
+++...
T Consensus 237 ~~~~~~ 242 (268)
T PRK10419 237 GDKLTF 242 (268)
T ss_pred hhccCC
Confidence 998753
No 337
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-38 Score=331.97 Aligned_cols=172 Identities=32% Similarity=0.515 Sum_probs=158.5
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC--hHHhhhce
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r~~i 821 (1128)
|+++|++++|+. +++++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 478999999964 36999999999999999999999999999999999999999999999999998775 56678899
Q ss_pred EEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
+|+||+|.+|.. |+++|+... ||||||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998642 99999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCE
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGR 955 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~ 955 (1128)
++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999998654 5899999999999986 99999999985
No 338
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4.1e-38 Score=348.65 Aligned_cols=218 Identities=23% Similarity=0.383 Sum_probs=179.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe-----cCCCChHHh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~-----i~~~~~~~~ 817 (1128)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+....
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999964 368999999999999999999999999999999999999999999999987 766665432
Q ss_pred ----hhceEEEcCCCc--cc-cccHhhcccc----CCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001189 818 ----RKILGIIPQSPV--LF-SGTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 885 (1128)
Q Consensus 818 ----r~~i~~v~Q~~~--lf-~~Tv~~nl~~----~~~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGq 885 (1128)
++.++|+||++. ++ ..|+.+|+.. +......+. ...+.++++.+ |++ +........|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHHH
Confidence 457999999984 22 3477777632 111111111 12344556664 443 45666778899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998864 37899999999999986 999999999999999999
Q ss_pred hHHhhcC
Q 001189 963 EELLSNE 969 (1128)
Q Consensus 963 ~~l~~~~ 969 (1128)
+++..+.
T Consensus 234 ~~~~~~~ 240 (253)
T TIGR02323 234 DQVLDDP 240 (253)
T ss_pred HHHhcCC
Confidence 9987654
No 339
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.5e-38 Score=363.09 Aligned_cols=204 Identities=26% Similarity=0.397 Sum_probs=171.2
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
|+++|++++|+.++ ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 247999999999999999999999999999999999999999875421 24
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 184 GTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
+.|||++|++.++ ..||+|||.++.. .+. ++..++++..++.+..+..| .+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 5799999999998 5899999987531 222 33455666677665544433 589999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|++||||||||+||+.+.+.+++.+.+... .|.|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999986655433 38999999999999865 89999999999999999999876
Q ss_pred c
Q 001189 334 N 334 (1128)
Q Consensus 334 ~ 334 (1128)
+
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
No 340
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-38 Score=329.90 Aligned_cols=170 Identities=31% Similarity=0.575 Sum_probs=156.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
++++|++++|+.. ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+|+.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999643 6999999999999999999999999999999999999999999999999987655 567889999
Q ss_pred EcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
+||++.+|.+ |+++|+. ||||||||++|||||+.+|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999988876 9998863 9999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 903 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
||||||++||+.+.+.+.+.|++.. ++.|+|++||+++++.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999875 46899999999999886 999999999974
No 341
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.8e-38 Score=347.32 Aligned_cols=200 Identities=29% Similarity=0.446 Sum_probs=173.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|+. +++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999964 3699999999999999999999999999999999999999999999986 24699
Q ss_pred EEcCCCcccc---ccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 823 IIPQSPVLFS---GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 823 ~v~Q~~~lf~---~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
|+||++.++. .|+++|+.......++++.++++..++.+.+.+ ....||||||||++||||++.+|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999997764 378888754333445667777777777655443 33579999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
++|||||||++||+.+...+++.|++..+ ++|||+|||+++++.. ||+|++|++ ++++.|+++++..
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999999999999999999988653 7899999999999876 999999965 7999999999864
No 342
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-38 Score=341.52 Aligned_cols=201 Identities=24% Similarity=0.389 Sum_probs=166.5
Q ss_pred EEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHHhhhceEE
Q 001189 748 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRKILGI 823 (1128)
Q Consensus 748 ~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~~i~~ 823 (1128)
||+++|+.. .+ |+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++... +....|+.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999753 34 99999999 99999999999999999999999999999999999988643 23346788999
Q ss_pred EcCCCcccc-ccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+||++.+|. .|+++|+.+... ..+.. ....+.++++.+ |++........+||||||||++||||++.+|++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 152 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQPEL 152 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 499999964321 11111 111233344443 555555666678999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++++.. ||++++|++|++++.|
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 153 LLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999998653 7899999999999976 9999999999998865
No 343
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.2e-38 Score=344.77 Aligned_cols=212 Identities=25% Similarity=0.386 Sum_probs=170.5
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHhh
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
+.|+||+++|+.. .+++++|+||+|++||++||+||||||||||+++|.|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 6799999999654 2579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred hceEEEcCCCccccc-cHhhccccCCCC-CHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPFSEH-SDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~-~~~~i~~~l~~~~l~~-~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+.++|+||++.+|.+ |+++|+.+.... ......+........+ .++. .+++.........||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD--LALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHh--hcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999987 999999742110 0000000011111111 2222 2444444555678999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCc-hhhhh-cCEEEEEeCCEEEEec
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRL-NTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l-~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+++|++|||||||++||+.+...+.+.|++.. .++|+|++||++ +++.. ||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999864 478999999998 46665 9999999999999865
No 344
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-38 Score=329.54 Aligned_cols=201 Identities=26% Similarity=0.443 Sum_probs=170.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
.|+++|++..||+ ++.+|+||||+|++||+++|+|+|||||||||++|.|+.+|++|.+.. +|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999984 468999999999999999999999999999999999999999875432 45
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC------------CCHHHH---HHHHHHhCcHHHHhcCCCCCcccccCCCCCCC
Q 001189 184 GTVAYVPQVSWIF-NATVRDNILFGSA------------FEPARY---EKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 247 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~------------~~~~~~---~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LS 247 (1128)
.+|||++|++.|. ..||.+|++.|+- ++.++. .++++..++.+..- .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 6799999999986 7899999998742 223332 33455555544332 3456899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchh-cCCEEEEEeCCeEeee
Q 001189 248 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEE 325 (1128)
Q Consensus 248 GGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~ 325 (1128)
|||+|||+|||||+++|+|+|-|||+|+|||.+.+++++.+.+.. ..|.|+|+.-|++++.. +||||+-|++|+|+++
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999776543 46899999999999976 5899999999999999
Q ss_pred cChhHHh
Q 001189 326 GTFEDLS 332 (1128)
Q Consensus 326 g~~~~l~ 332 (1128)
|+.+++.
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9998864
No 345
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-38 Score=344.02 Aligned_cols=224 Identities=25% Similarity=0.457 Sum_probs=185.6
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-C----CCceEEECCEecCCCChHH
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-L----ERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-p----~~G~I~i~g~~i~~~~~~~ 816 (1128)
++++|++..|... ...+++||||+|++||++||||.|||||||+.++|+|+++ | .+|+|.++|.|+.+++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 6889999999643 2369999999999999999999999999999999999997 4 5799999999999999875
Q ss_pred hh----hceEEEcCCCc-cccc--cHhhcc----ccCCCC-C----HHHHHHHHHHhcHHH---HHHHccCCcchhhhcC
Q 001189 817 LR----KILGIIPQSPV-LFSG--TVRFNL----DPFSEH-S----DADLWEALERAHLKD---AIRRNSLGLDAQVSEA 877 (1128)
Q Consensus 817 ~r----~~i~~v~Q~~~-lf~~--Tv~~nl----~~~~~~-~----~~~i~~~l~~~~l~~---~i~~lp~Gldt~v~e~ 877 (1128)
+| +.|++|||||. -++- ||.+.+ ...... + .++..+.|+.+++.+ .+...|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 43 36999999994 2332 555433 211111 1 234666677776643 334444
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCC
Q 001189 878 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSG 954 (1128)
Q Consensus 878 g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G 954 (1128)
.+||||||||+.||-||+.+|++||.||||++||..+.+.|.+.|+++.+ +.|+|+||||+..+.. ||||+||..|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 58999999999999999999999999999999999999999999998764 7999999999999988 9999999999
Q ss_pred EEEEecChhHHhhcCCCchHHHHH
Q 001189 955 RVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 955 ~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
+|+|.|+.+++..++...|.+..-
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~Ll 254 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGLL 254 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHHH
Confidence 999999999999988777765543
No 346
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-38 Score=320.03 Aligned_cols=212 Identities=27% Similarity=0.445 Sum_probs=185.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+.+|++++-..+ .+|+++||+++|||++||+||||||||||++.|.|.+.|++|++.++|+++..+++.++-++-++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 7889999887543 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcc-ccccHhhccccC----C---CCCHHH--HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 824 IPQSPVL-FSGTVRFNLDPF----S---EHSDAD--LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 824 v~Q~~~l-f~~Tv~~nl~~~----~---~~~~~~--i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+||+..+ |.-||+|-+.++ . +..+++ ..+++.++++..+-.+. -..||||||||+.|||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHHH
Confidence 9999875 788999877543 1 111333 56778887776654432 2479999999999999
Q ss_pred Hhcc------CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 894 ALLR------RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 894 all~------~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
.|.+ ++++|+||||||+||......+.+..+++. .++.|+.|-||++.... ||||++|.+||+++.|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9986 346999999999999999999999999876 47899999999999887 999999999999999999999
Q ss_pred hhc
Q 001189 966 LSN 968 (1128)
Q Consensus 966 ~~~ 968 (1128)
+..
T Consensus 229 lt~ 231 (259)
T COG4559 229 LTD 231 (259)
T ss_pred cCH
Confidence 864
No 347
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-38 Score=350.87 Aligned_cols=209 Identities=28% Similarity=0.417 Sum_probs=171.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 48999999999633 469999999999999999999999999999999999999999999999998742 12234699
Q ss_pred EEcCCCcc---ccccHhhccccC--C------CC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 823 IIPQSPVL---FSGTVRFNLDPF--S------EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 823 ~v~Q~~~l---f~~Tv~~nl~~~--~------~~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
|+||++.+ +..++++|+... . .. .++.+.++++..++.+. ......+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEF-----------RHRQIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHH
Confidence 99999865 345788887531 0 00 12234445555555433 333446799999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++++.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999999865 47899999999999876 9999777 89999999999875
Q ss_pred h
Q 001189 967 S 967 (1128)
Q Consensus 967 ~ 967 (1128)
.
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 3
No 348
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-38 Score=356.19 Aligned_cols=211 Identities=23% Similarity=0.407 Sum_probs=171.4
Q ss_pred CCCcEEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------
Q 001189 116 GLPAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 181 (1128)
Q Consensus 116 ~~~~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------ 181 (1128)
+.+.|+++|++|+|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 345799999999997421 247999999999999999999999999999999999999998874321
Q ss_pred ----------------ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCHHH----HHHHHHHhCcHHHHhcCCCCCc
Q 001189 182 ----------------IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLLPGGDV 236 (1128)
Q Consensus 182 ----------------~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~g~~ 236 (1128)
++..|+||+|+| ++|+.||+|||.|+.. .+.++ ..+.++..++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------- 167 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD---------- 167 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------
Confidence 234599999998 6888999999998732 22222 223333333321
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEE
Q 001189 237 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRII 315 (1128)
Q Consensus 237 t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~ 315 (1128)
...+..+.+||||||||++|||||+.+|++|||||||++||+.+++++++.+.....+|+|+|+|||+++++. .||+|+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 1245567899999999999999999999999999999999999999999866544446899999999999874 699999
Q ss_pred EEeCCeEeeecChhHHhhcch
Q 001189 316 LVHEGMVKEEGTFEDLSNNGE 336 (1128)
Q Consensus 316 ~l~~G~i~~~g~~~~l~~~~~ 336 (1128)
+|++|++++.|+++++.....
T Consensus 248 vl~~G~i~~~g~~~~~~~~~~ 268 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTDQH 268 (320)
T ss_pred EEECCEEEEeCCHHHHhcCHH
Confidence 999999999999998876543
No 349
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=8.1e-38 Score=333.58 Aligned_cols=185 Identities=25% Similarity=0.378 Sum_probs=162.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHh-hhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~-r~~ 820 (1128)
++++|++++|++ +++++|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999964 3699999999999999999999999999999999999 58999999999999988776554 456
Q ss_pred eEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
++|+||++.+|.+ |+++|+ .. ...+||||||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999998876 555544 01 11369999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhh--hcCEEEEEeCCEEEEecChhHHh
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTII--DCDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~--~~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.| +.++.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999998754 789999999999998 59999999999999999 55554
No 350
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-38 Score=344.56 Aligned_cols=201 Identities=28% Similarity=0.438 Sum_probs=165.1
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 184 (1128)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 57999999999999999999999999999999999999998875321 234
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 185 TVAYVPQVSWIFN-ATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~-~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
.|+|++|++.++. .||+||+.++.. .+. +++.++++..++.+..+ ....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-----------LYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence 6999999998886 599999987521 222 23344555555543332 233589999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|+|||+++++.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999986654433 48999999999998765 89999999999999999888764
Q ss_pred c
Q 001189 334 N 334 (1128)
Q Consensus 334 ~ 334 (1128)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
No 351
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-38 Score=325.49 Aligned_cols=205 Identities=28% Similarity=0.412 Sum_probs=172.0
Q ss_pred cEEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecC
Q 001189 119 AISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 184 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 184 (1128)
.++++|+++.|+.+. -.++|++|||+|.+||+++|+|+||||||||.++|+|+.+|++|.+.. .++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999997431 115999999999999999999999999999999999999999876432 234
Q ss_pred cEEEEecCCCC---CcccHHHHHhcCC-----CCCHHHHHHHHHHhCcHHH-HhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 185 TVAYVPQVSWI---FNATVRDNILFGS-----AFEPARYEKAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 185 ~i~~v~Q~~~l---~~~Tv~eni~~g~-----~~~~~~~~~~~~~~~l~~~-~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
.|-+|+|||.- ...||++-|.-+. +..+.+..++++..+|.+. ++..| ..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 69999999964 3468888876331 1224557788888888654 55666 479999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||..+|++||||||||+||+.....|++.+.... ..+-|.|+||||+..+.+ ||||++|++|++++.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999998665533 357899999999999986 89999999999999999999887
Q ss_pred c
Q 001189 334 N 334 (1128)
Q Consensus 334 ~ 334 (1128)
.
T Consensus 232 ~ 232 (252)
T COG1124 232 H 232 (252)
T ss_pred C
Confidence 6
No 352
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-38 Score=334.54 Aligned_cols=189 Identities=26% Similarity=0.373 Sum_probs=161.3
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHhh
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
+.++||+|.|+.. .+++|+++||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+ ...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 7899999999742 4579999999999999999999999999999999999999 89999999999987764 3567
Q ss_pred hceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+.++|+||++.+|.. |+++|+.+.... . ..+....||||||||++|||||++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------~---------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC------------K---------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh------------c---------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 789999999988865 999998643100 0 122335799999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEee-cCchhhhh-cCEEEEEeCCEEEEec
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIA-HRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vt-H~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+|++|||||||++||+.+++.+++.|++..+ ++|+|+++ |+++.+.. ||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999998754 46766655 55677765 9999999999998764
No 353
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-38 Score=360.75 Aligned_cols=203 Identities=28% Similarity=0.417 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+. ++++|+|+||++++|++++|+|||||||||||++|+|+.+|++|.+.. .++.|||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999942 357999999999999999999999999999999999999999875422 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
|+|++.+| +.||+|||.|+.. .+ .+++.++++..++.+..+..| .+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999998 5799999998742 12 234566777788876666555 48999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
+.+|++||||||||+||+.+++.+.+.+.+... .|.|+|+|||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 999999999999999999999999887654433 3899999999998765 5899999999999999999998665
No 354
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=5.7e-38 Score=332.98 Aligned_cols=182 Identities=29% Similarity=0.470 Sum_probs=160.9
Q ss_pred cEEEEEEEEEeCCC----CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEecCCCChHH
Q 001189 743 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~----~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~g~~i~~~~~~~ 816 (1128)
.|+++||+++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999642 247999999999999999999999999999999999999 9999999999998864 35
Q ss_pred hhhceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 817 LRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
.|+.++|+||++.+|.. |+++|+.+.. . + ..||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~--~-------------------~~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------K--L-------------------RGLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------H--h-------------------ccCCHHHHHHHHHHHHH
Confidence 67889999999988865 9999885310 0 0 06999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCch-hhhh-cCEEEEEeCCEEEEec
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~-~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++ .+.. ||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 4789999999997 5655 9999999999998754
No 355
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.3e-38 Score=329.39 Aligned_cols=177 Identities=33% Similarity=0.532 Sum_probs=158.2
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++||+++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 3699999999999999999999999999999999999999999999999999888887888889999
Q ss_pred cCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 001189 825 PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 904 (1128)
Q Consensus 825 ~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlL 904 (1128)
|| +++.+++.+++. ....+||||||||++||||++++|++|||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98 445555554433 23467999999999999999999999999
Q ss_pred eccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 905 DEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 905 DEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999998754 7899999999999866 9999999999998654
No 356
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.8e-37 Score=336.36 Aligned_cols=206 Identities=34% Similarity=0.577 Sum_probs=179.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|+++.|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+.+|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 37899999999632 357999999999999999999999999999999999999998875421 12369
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+|++|+++++..|++||+.++.. .+..++.+.++..++.+.++..|.+++|.+.....+||||||||++|||||+.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988899999987643 34456677888889998899999999999888889999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeec
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 326 (1128)
++||||||++||+.+.+.+++.+.... +++|+|++||+++++..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999998655433 348999999999988889999999999987653
No 357
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.6e-38 Score=329.26 Aligned_cols=172 Identities=29% Similarity=0.473 Sum_probs=155.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHhhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i 821 (1128)
.|+++|++++| +++++||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...++ ...|+.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 38999999998 8999999999999999999999999999999999999999999999999988764 3467789
Q ss_pred EEEcCCC---ccc-cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 822 GIIPQSP---VLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 822 ~~v~Q~~---~lf-~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|+||++ .++ ..|+++|+.+... ||||||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 344 4699999864210 99999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++++.. ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999864 47899999999999988 999999999974
No 358
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.9e-38 Score=337.21 Aligned_cols=193 Identities=25% Similarity=0.373 Sum_probs=160.9
Q ss_pred EEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHhhhce
Q 001189 746 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKIL 821 (1128)
Q Consensus 746 ~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~~i 821 (1128)
++||++.|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++. ...|+.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4689999964 369999999999999999999999999999999999999999999999999765442 2356789
Q ss_pred EEEcCCCcccc-ccHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|++|++.+|. .|+++|+.+.. ... ++++.++++..++. ........+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-----------LKLKQKIYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-----------hhhcCChhhCCHHHHHHHHHHH
Confidence 99999999987 59999997521 111 22344444444443 3344445689999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhhcCEEEEE
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLL 951 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~~D~i~vl 951 (1128)
||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999998653 78999999999987779999875
No 359
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=357.99 Aligned_cols=203 Identities=26% Similarity=0.396 Sum_probs=171.3
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 187 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 187 (1128)
+.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .++.||
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46999999999963 56999999999999999999999999999999999999999875422 135699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
||+|++.+| ..||+|||.|+.. .+ .+++.++++..++....+..| ..|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 999999998 5799999998732 12 234556666667665444333 5899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|+.+|++||||||||+||+.+++++.+.+..... .|.|+|+|||+++++ ..||+|++|++|++++.|+++++..+
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999886654433 389999999999986 45899999999999999999988654
No 360
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.5e-37 Score=344.10 Aligned_cols=210 Identities=19% Similarity=0.283 Sum_probs=174.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHhhh-
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDLRK- 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~r~- 819 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...++...++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999964 3699999999999999999999999999999999998 6899999999999998877665554
Q ss_pred ceEEEcCCCccccc-cHhhccccCCC----------CCH----HHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCC-CCC
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPFSE----------HSD----ADLWEALERAHLKDAIRRNSLGLD-AQVSEAGE-NFS 882 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~~~----------~~~----~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~-~LS 882 (1128)
.++|+||++.+|.+ |+.+|+..... ... +.+.++++.+ |+. +..+.... .||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LS 153 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLV-----------GMDPSFLSRNVNEGFS 153 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHc-----------CCchhhhccccccCCC
Confidence 48999999998876 88888753211 000 1122333333 332 23333333 599
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh--cCEEEEEeCCEEEEe
Q 001189 883 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEY 959 (1128)
Q Consensus 883 gGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~--~D~i~vl~~G~i~~~ 959 (1128)
||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||++++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999875 47999999999999875 899999999999999
Q ss_pred cChhHH
Q 001189 960 DTPEEL 965 (1128)
Q Consensus 960 g~~~~l 965 (1128)
|+++.+
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 998743
No 361
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=348.74 Aligned_cols=206 Identities=27% Similarity=0.397 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+....+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 589999999997433356999999999999999999999999999999999999999875421 23469
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|+|. ++..||+|||.|+.. .+. ++..++++..++.+..+..| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 567899999998632 222 34566777778776555443 58999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|||+.+|++|||||||++||+.+.+.+++.+..... .|+|+|++||+++.+..||+|++|++|+++..|+++++....
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 999999999999999999999999999886554433 389999999999998889999999999999999998876553
No 362
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.6e-37 Score=342.36 Aligned_cols=209 Identities=23% Similarity=0.379 Sum_probs=172.5
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++||++. .+|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.++|.++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 46677774 27999999999999999999999999999999999985 599999999999888887888889999
Q ss_pred cCCCccc-cccHhhccccCCCC--CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc----
Q 001189 825 PQSPVLF-SGTVRFNLDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR---- 897 (1128)
Q Consensus 825 ~Q~~~lf-~~Tv~~nl~~~~~~--~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~---- 897 (1128)
||++.++ ..|+++|+.+.... ...+. ...+.+.++.+ |++.........||||||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 9998644 56999999754221 11111 01122333332 44444455567899999999999999997
Q ss_pred ---CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 898 ---RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 898 ---~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999999875 47899999999998877 99999999999999999988764
No 363
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.7e-37 Score=376.69 Aligned_cols=212 Identities=25% Similarity=0.406 Sum_probs=181.3
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh-hce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r-~~i 821 (1128)
.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+....+ +.+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999877766654 469
Q ss_pred EEEcCCCccccc-cHhhccccCCCCC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSEHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|+||++.++.. |+++|+.+..... ++++.++++.. |++........+||||||||++|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL-----------GCQLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHc-----------CCCccccCChhhCCHHHHHHHHHHHHHHc
Confidence 999999988875 9999997542211 12333344443 33333344456899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998864 47899999999999977 99999999999999999998764
No 364
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-37 Score=330.40 Aligned_cols=181 Identities=25% Similarity=0.399 Sum_probs=159.1
Q ss_pred cEEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEecCCCChHHhh
Q 001189 743 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 48999999999641 246999999999999999999999999999999999986 489999999999885 4567
Q ss_pred hceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
++++|+||++.+|.. |+++|+.+.. . +. +||||||||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~---------~~---------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------L---------LR---------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------H---------Hh---------------cCCHHHhHHHHHHHHHhc
Confidence 889999999988875 9999986310 0 00 699999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchh-hh-hcCEEEEEeC-CEEEEec
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-II-DCDRILLLDS-GRVLEYD 960 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~-~~-~~D~i~vl~~-G~i~~~g 960 (1128)
+|++|||||||++||+.+...+++.|++.. .++|+|+|||+++. +. .||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999865 47899999999984 54 4999999999 9999865
No 365
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=337.94 Aligned_cols=467 Identities=20% Similarity=0.218 Sum_probs=291.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCh-----hHHHHHHhhchhhhhhhhHHH
Q 001189 462 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPL-----GRIINRFAKDLGDIDRNVAVF 536 (1128)
Q Consensus 462 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~-----G~ilnr~s~D~~~id~~l~~~ 536 (1128)
+.+|.+++.+.+++...+.|+-.....+.-.-+-..++++-+.....|+..... -..=.|+..|+...-.....+
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 456777777777788888888888888888888888888888777444433221 233368888887765443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHH
Q 001189 537 VNMFMGQVSQLLSTFVLIGIV---------------STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQF 601 (1128)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 601 (1128)
...++..+..+++..+++.-+ ..++.|+++..++....+...+.+....+.-......+.+...+
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 334444443333322222111 11122222222111111111221111111111111122233344
Q ss_pred HHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHH
Q 001189 602 GEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR---WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 678 (1128)
Q Consensus 602 ~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 678 (1128)
...-++...|-.|+.|+...+...+.++.............. |.+.....++.++-++.+. ..+..+... +
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~a-p~~f~g~i~----~- 322 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAA-PRYFSGQIT----F- 322 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhcc-HhhhcCcCh----H-
Confidence 455567777888877665544444443333322222111111 2222222222222111111 111222211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCCCccccCCCCCCCCCCCCccEEEEEEEEE
Q 001189 679 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL------PSEAPLVIESNRPPPGWPSSGSIKFEDVVLR 752 (1128)
Q Consensus 679 ~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~------~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~ 752 (1128)
+-+......+..+...+++++..+..+.+......|+.++... +++.+.... ......-..+..|+++|++..
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~ 401 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSLR 401 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeEE
Confidence 1112222333445566777777777777888889999887632 222111100 000000001457999999999
Q ss_pred eCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCcccc
Q 001189 753 YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 832 (1128)
Q Consensus 753 y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 832 (1128)
-+++. ..|++.+|+|+|||.+-|.|+||||||||+++|.|+++--+|+|.+-. -..+-|+||.|.+-.
T Consensus 402 ~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~ 469 (604)
T COG4178 402 TPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQ 469 (604)
T ss_pred CCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCC
Confidence 87654 789999999999999999999999999999999999999999986541 135789999999999
Q ss_pred ccHhhccc-cCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecccc
Q 001189 833 GTVRFNLD-PFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909 (1128)
Q Consensus 833 ~Tv~~nl~-~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs 909 (1128)
||+||-|. |.. ..+|+++.++|.+|+|.++++++. +.+. -..-||+||||||++||.++++|++++|||+||
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~-~~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATs 544 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLD-EEDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS 544 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHh-ccCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchh
Confidence 99999886 333 278999999999999999999863 2222 345699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEe
Q 001189 910 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 952 (1128)
Q Consensus 910 ~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~ 952 (1128)
+||++++..+.+.+++..+++|||-|+||.....-.++.+-+.
T Consensus 545 ALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 545 ALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred ccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999999999977666566655543
No 366
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.2e-37 Score=340.89 Aligned_cols=195 Identities=27% Similarity=0.406 Sum_probs=158.2
Q ss_pred CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEc-CCCccc-cccH
Q 001189 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP-QSPVLF-SGTV 835 (1128)
Q Consensus 758 ~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~lf-~~Tv 835 (1128)
+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++|+| |++.++ ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3699999999999999999999999999999999999999999999999987553 345678899998 566676 4599
Q ss_pred hhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCC
Q 001189 836 RFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 912 (1128)
Q Consensus 836 ~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD 912 (1128)
++|+.+.. ....++..+. +.+.++. .|++.........||||||||++|||||+.+|++|||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKR-----LDELSEL--LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 99985421 1222222211 1122222 234333444456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEec
Q 001189 913 VRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 960 (1128)
Q Consensus 913 ~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g 960 (1128)
+.+.+.+.+.|+++.+ ++|||+|||+++++.. ||+|++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999998653 6899999999999877 9999999999998765
No 367
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.7e-37 Score=319.42 Aligned_cols=163 Identities=33% Similarity=0.432 Sum_probs=148.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4789999999643 46999999999999999999999999999999999999999999999873 57999
Q ss_pred EcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
+||++.+++.|+++|+.+. ....||||||||++||||++++|++||
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998888999998642 135799999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCC
Q 001189 904 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 954 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G 954 (1128)
|||||++||+.+.+.+.+.|++. ++|+|++||+++....||+|++|++|
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 99999999999999999999985 68999999999877679999999865
No 368
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=3.5e-36 Score=390.61 Aligned_cols=211 Identities=24% Similarity=0.319 Sum_probs=148.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHH---------HHhcCCCCCCc--------eEEEC
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN---------TLFRIVELERG--------RILID 805 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~---------~l~g~~~p~~G--------~I~i~ 805 (1128)
.++++|++. ..|+++||+|++||+++|.|+||||||||++ .|.|...+..+ -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 478888752 3699999999999999999999999999999 55554322111 23455
Q ss_pred CEecCCCCh----H------Hhh---------hceE-----EEcCC------------------C---------------
Q 001189 806 GFDIAKFGL----M------DLR---------KILG-----IIPQS------------------P--------------- 828 (1128)
Q Consensus 806 g~~i~~~~~----~------~~r---------~~i~-----~v~Q~------------------~--------------- 828 (1128)
-.++..-+. . ++| +..+ +.++. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 444332111 1 233 1111 12221 0
Q ss_pred -----ccccc-cHhhccccCCC-----C-CHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhHHHHHHHHHHh
Q 001189 829 -----VLFSG-TVRFNLDPFSE-----H-SDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 829 -----~lf~~-Tv~~nl~~~~~-----~-~~~~i~~~l~~~~l~~~i~~lp~Gldt~-v~e~g~~LSgGqrqrl~lAral 895 (1128)
..+.+ ||.|+|++... . ...++.+.+ +.++. .|++.. .++...+||||||||++|||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHH--cCCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 12333 66666654211 0 011122111 22333 466654 6777789999999999999999
Q ss_pred c---cCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEe------CCEEEEecChhHH
Q 001189 896 L---RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLD------SGRVLEYDTPEEL 965 (1128)
Q Consensus 896 l---~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~------~G~i~~~g~~~~l 965 (1128)
+ ++|++|||||||++||+.+.+.+.+.|+++. .+.|||+|+|+++.+..||+|++|. +|++++.|+|+++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 8 5999999999999999999999999998865 4789999999999996699999996 7999999999999
Q ss_pred hhc
Q 001189 966 LSN 968 (1128)
Q Consensus 966 ~~~ 968 (1128)
...
T Consensus 905 ~~~ 907 (1809)
T PRK00635 905 IHL 907 (1809)
T ss_pred Hhc
Confidence 863
No 369
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=348.06 Aligned_cols=205 Identities=29% Similarity=0.463 Sum_probs=168.9
Q ss_pred EEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 120 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
|+++|++|+|+.+. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 136999999999999999999999999999999999999998875322
Q ss_pred --------------------ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcH-HHHhcC
Q 001189 182 --------------------IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQ-HDLDLL 231 (1128)
Q Consensus 182 --------------------~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~-~~~~~l 231 (1128)
++..||||+|+| .+|..||+|||.|+.. .+. ++..++++.++|. +..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-- 160 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ-- 160 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh--
Confidence 134599999986 5778899999998731 222 3345566666664 2222
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-c
Q 001189 232 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-Q 310 (1128)
Q Consensus 232 ~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~ 310 (1128)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+......|+|+|+|||+++++. .
T Consensus 161 ---------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 161 ---------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred ---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 334689999999999999999999999999999999999999998866544445899999999999865 5
Q ss_pred CCEEEEEeCCeEeeecChhHHhhcc
Q 001189 311 VDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 311 ~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
||+|++|++|++++.|+.+++....
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcCH
Confidence 9999999999999999998886553
No 370
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-37 Score=346.88 Aligned_cols=205 Identities=25% Similarity=0.441 Sum_probs=168.4
Q ss_pred EEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 120 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
|+++|++|+|+.+. .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997422 136999999999999999999999999999999999999999875321
Q ss_pred ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 ~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
.+..|+||+|+| .+|..||.||+.|+.. .+. +++.++++..++.+.+ ......+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHHH
Confidence 234699999998 6888899999998732 222 2345555556653221 12344689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|++|||||+.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++. .||+|++|++|+++++|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999998865443345899999999999885 5999999999999999999988
Q ss_pred hhc
Q 001189 332 SNN 334 (1128)
Q Consensus 332 ~~~ 334 (1128)
...
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 654
No 371
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.6e-38 Score=304.19 Aligned_cols=196 Identities=27% Similarity=0.409 Sum_probs=169.0
Q ss_pred EeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccc
Q 001189 752 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 831 (1128)
Q Consensus 752 ~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 831 (1128)
.|.....++|+++||++.+||.++|.||||||||||++.++-+..|++|++++.|.|++.++++.+|++|+||-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 34444458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHhhcccc-CC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 001189 832 SGTVRFNLDP-FS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 906 (1128)
Q Consensus 832 ~~Tv~~nl~~-~~----~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDE 906 (1128)
.+||.+||.+ +. ........+.++++++. ++.+..+..+||||||||++|+|-|.--|+||+|||
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~----------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP----------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCc----------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 9999999964 21 12222233333333332 355566678899999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchh-hhhcCEEEEEeCCEEE
Q 001189 907 ATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT-IIDCDRILLLDSGRVL 957 (1128)
Q Consensus 907 pTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~-~~~~D~i~vl~~G~i~ 957 (1128)
|||+||+.+.+.|.+.|.+++ ++..++.|||+.+. +..+|+++-+..|++-
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 999999999999999999987 36899999999999 6669999999998763
No 372
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.1e-37 Score=356.17 Aligned_cols=204 Identities=28% Similarity=0.414 Sum_probs=171.9
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 187 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 187 (1128)
..++++|++++|+. +.+|+|+||++++|++++|+||||||||||+++|+|+.+|++|.+.. .++.||
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 3 PYLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred cEEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 35899999999963 56999999999999999999999999999999999999999875432 134699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
||+|++.+| ..||+|||.|+.. .+ .+++.++++..++.+..+.. ..+|||||||||+||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY-----------PGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 999999998 5799999998732 22 23455666666665544433 35899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|+.+|+++|||||||+||+.+.+++.+.+.+... .|.|+|+|||+++++. .||+|++|++|++++.|+++++..+.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999887655433 3899999999999865 58999999999999999999987653
No 373
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=377.55 Aligned_cols=216 Identities=22% Similarity=0.344 Sum_probs=179.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 821 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |+.+
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 3899999999964 369999999999999999999999999999999999999999999999999988776543 4579
Q ss_pred EEEcCCCccccc-cHhhccccCCC-------C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSE-------H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~-------~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
+|+||++.+|.. |+++|+.+... . ...+.. ..+.+.++.+ |+.........+||||||||++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence 999999988865 99999964211 0 111111 1122333332 4433344445689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|+||||||||++||+.+...+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 9999999999999999999999999999999998865 47899999999999987 99999999999999999988753
No 374
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-37 Score=347.84 Aligned_cols=206 Identities=28% Similarity=0.459 Sum_probs=168.4
Q ss_pred EEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ec
Q 001189 120 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 183 (1128)
Q Consensus 120 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~ 183 (1128)
++++|++|.|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997422 247999999999999999999999999999999999999999875321 23
Q ss_pred CcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 184 GTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 184 ~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
..||||+|+| .+++.||+|||.|+.. .+. +++.++++.+++.. .+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHHH
Confidence 4699999998 5678999999998631 222 23445566666540 0112344578999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
+|||||+.+|++|||||||++||+.+.+++++.+..... .|+|+|+|||+++++. .||+|++|++|++++.|+.+++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999986554433 3899999999999875 59999999999999999998876
Q ss_pred hc
Q 001189 333 NN 334 (1128)
Q Consensus 333 ~~ 334 (1128)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 54
No 375
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.6e-37 Score=316.70 Aligned_cols=159 Identities=30% Similarity=0.538 Sum_probs=147.8
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH-HhhhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i~ 822 (1128)
|+++|++++|+.. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..|+.++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999643 699999999999999999999999999999999999999999999999999887654 4577899
Q ss_pred EEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 823 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
|+|| ||||||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9998 9999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 903 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 903 lLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
||||||++||+.+.+.+.+.|++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999874 47899999999998877 99999999999875
No 376
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3e-37 Score=336.65 Aligned_cols=201 Identities=26% Similarity=0.368 Sum_probs=164.3
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC----CCceEEECCEecCCCChHHhhhceEEEcCCCc-cc-c-
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLRKILGIIPQSPV-LF-S- 832 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p----~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf-~- 832 (1128)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...++.++|+||++. .| .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999998654 223468999999995 34 3
Q ss_pred ccHhhccccC----CCCC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 001189 833 GTVRFNLDPF----SEHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 905 (1128)
Q Consensus 833 ~Tv~~nl~~~----~~~~---~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLD 905 (1128)
.|+.+|+... .... .+++.+.++..++.+ + ++.......+||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4888887421 1111 122344444433321 0 13455566789999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 906 EATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 906 EpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
|||++||+.+.+.+.+.|++..+ ++|||++||+++++.. ||+|++|++|++++.|+++++.....
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 218 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPK 218 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcC
Confidence 99999999999999999998653 7899999999999976 99999999999999999999986543
No 377
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=375.73 Aligned_cols=215 Identities=23% Similarity=0.360 Sum_probs=178.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-hhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i 821 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999964 36999999999999999999999999999999999999999999999999987655544 35679
Q ss_pred EEEcCCCccccc-cHhhccccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~-------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|+||++.++.. |+++|+.+... ....+..+ .+.+.++.+ |+.........+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 999999988865 99999975321 11111111 122333332 3433334445679999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999998864 46899999999999987 9999999999999999988764
No 378
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=376.45 Aligned_cols=215 Identities=22% Similarity=0.365 Sum_probs=179.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEecCCCChHH-hhh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i~~~~~~~-~r~ 819 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999964 3699999999999999999999999999999999999996 8999999999998766554 457
Q ss_pred ceEEEcCCCccccc-cHhhccccCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~~~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
.++|+||++.+|.. |+++|+.+... ...++..+ .+.++++.+ |++........+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 79999999988865 99999975321 11111111 123334443 444334445568999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
|||+.+|+||||||||++||+.+...+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 99999999999999999999999999999998864 47899999999999987 9999999999999999988764
No 379
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3e-37 Score=358.87 Aligned_cols=227 Identities=27% Similarity=0.464 Sum_probs=189.4
Q ss_pred cEEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC----CceEEECCEecCCCChHH
Q 001189 743 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE----RGRILIDGFDIAKFGLMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~----~G~I~i~g~~i~~~~~~~ 816 (1128)
-++++|+++.|.... ..+++||||+|.+||++||||.|||||||+.++|.|+.++. +|+|.++|.|+..++...
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 589999999996433 25999999999999999999999999999999999999987 899999999999888766
Q ss_pred hh----hceEEEcCCCc-cccc--cHhhccc----cCCCC----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001189 817 LR----KILGIIPQSPV-LFSG--TVRFNLD----PFSEH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 881 (1128)
Q Consensus 817 ~r----~~i~~v~Q~~~-lf~~--Tv~~nl~----~~~~~----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~L 881 (1128)
.| +.|+||||+|. .++. ||.+.+. ..... ..++..+.|+.+++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 54 45999999995 4543 6655442 11111 23445566666666443322 2234689
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 882 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 882 SgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
|||||||+.||+||+.+|++||+||||++||+.+.+.|.+.|+++. .+.++|+||||+..+.. ||||+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999876 47899999999999998 99999999999999
Q ss_pred ecChhHHhhcCCCchHHHHH
Q 001189 959 YDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 959 ~g~~~~l~~~~~~~~~~~~~ 978 (1128)
.|+++++++++...|.+..-
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll 255 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLL 255 (539)
T ss_pred ecCHHHHHhccCCcccHHHH
Confidence 99999999988877776553
No 380
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.2e-37 Score=328.44 Aligned_cols=194 Identities=24% Similarity=0.329 Sum_probs=166.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..+|+.++|
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999986543 467889999
Q ss_pred EcCCCccc-cccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 824 IPQSPVLF-SGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 824 v~Q~~~lf-~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+||++.++ ..|+++|+.++.. ..++++.++++..++.+... ....+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 4699999976432 24556667777776654332 23357999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEE
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 951 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl 951 (1128)
|||||||++||+.+.+.+.+.|++.. +++|+|++||+...+.. ||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998764 47899999999887766 9999876
No 381
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.8e-37 Score=355.66 Aligned_cols=204 Identities=29% Similarity=0.419 Sum_probs=173.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 187 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 187 (1128)
+.++++|++++|+. +++|+++||++++|++++|+|||||||||||++|+|+++|++|.+.. .++.|+
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46999999999963 56999999999999999999999999999999999999998875421 134699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
||+|++.+| ..||+|||.|+.. .+ .++..++++..++.+.++..| .+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 999999998 5699999998742 12 234566677777776666555 4899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|+.+|++||||||||+||+.+++.+.+.+..... .|.|+|+|||+++++. .||+|++|++|++++.|+++++..+.
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999886654433 4899999999999864 69999999999999999999887653
No 382
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=5.2e-37 Score=338.94 Aligned_cols=218 Identities=19% Similarity=0.285 Sum_probs=167.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEecCCCChHHhh-hc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR-KI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~r-~~ 820 (1128)
|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++...++...+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999964 36999999999999999999999999999999999994 69999999999999887766554 56
Q ss_pred eEEEcCCCccccc-cHhhccccC-CCCCHHHHHHHHHHh----cHHHHHHHccCCcc-hhhhcCC-CCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPF-SEHSDADLWEALERA----HLKDAIRRNSLGLD-AQVSEAG-ENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~-~~~~~~~i~~~l~~~----~l~~~i~~lp~Gld-t~v~e~g-~~LSgGqrqrl~lA 892 (1128)
++|+||++.++.. |..+++... .........+.++.. .+.+.++.+ ++. ....... ..||||||||++||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL--KMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc--CCChhhcccCCCCCCCHHHHHHHHHH
Confidence 9999999987654 544443210 000000000000111 112222221 221 1111222 36999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh--cCEEEEEeCCEEEEecChhHH
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~--~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+.. ||+|++|++|++++.|+++..
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999988654 6899999999999987 899999999999999998754
No 383
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2e-37 Score=334.96 Aligned_cols=191 Identities=25% Similarity=0.440 Sum_probs=158.4
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 184 (1128)
++++|++++|+.. .+++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. ++.
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 246999999999999999999999999999999999999998875321 234
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.++|++|++.++. .||+||+.++.. .. .+++.++++..++.+..+..+ .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 6999999998874 699999987521 11 234566677777765544333 5899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeE
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 322 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 322 (1128)
||||+.+|+++||||||++||+.+.+++.+.+.....+|+|+|+|||+++++.. ||+|++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998665443458999999999999874 899999999974
No 384
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3e-37 Score=336.48 Aligned_cols=190 Identities=26% Similarity=0.402 Sum_probs=160.0
Q ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCcccc-ccHhhcc
Q 001189 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNL 839 (1128)
Q Consensus 761 l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~~nl 839 (1128)
|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+||++.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999887 5999998
Q ss_pred ccC-----CCCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccC
Q 001189 840 DPF-----SEHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 910 (1128)
Q Consensus 840 ~~~-----~~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~ 910 (1128)
.+. ....+. .+.+.++.. |++.........||||||||++|||||+.+|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALV-----------GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHc-----------CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 642 112222 233334443 344444445568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 911 VDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 911 lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998864 37899999999999877 9999999999999999877664
No 385
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-37 Score=343.59 Aligned_cols=200 Identities=29% Similarity=0.452 Sum_probs=169.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++|+|+. .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 5899999999963 246999999999999999999999999999999999999999875421 13469
Q ss_pred EEEecCC--CCCcccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVS--WIFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~--~l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|+| .++..||+||+.|+.. .+ .+++.++++.+++.+..+..| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 5678899999998632 22 234566677777766555444 47999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|||+.+|+++||||||++||+.+.+++++.+.....+|+|+|++||+++++. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999998866554445899999999999985 5999999999999999998654
No 386
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-37 Score=336.05 Aligned_cols=201 Identities=31% Similarity=0.448 Sum_probs=165.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 3789999999963 57999999999999999999999999999999999999998875421 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC-------CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSAF-------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~~-------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
++|+|.++ ..||+||+.++... +. ++..++++..++.+..+ ....+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----------RYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHH
Confidence 99999887 57999999876321 11 23344455555544333 3346899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 9999999999999999999999999999886554333 3789999999999875 489999999999999999888754
No 387
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.1e-37 Score=328.64 Aligned_cols=194 Identities=25% Similarity=0.340 Sum_probs=164.7
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999964 36999999999999999999999999999999999999999999999999987654 456778999
Q ss_pred EcCCCcccc-ccHhhccccCCC----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~----~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
++|++.++. .|+++|+.+... ..++++.++++..++.++. ......||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-----------DVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHHHHHHhcC
Confidence 999998876 499999964321 2334556666666665433 233467999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEE
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 951 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl 951 (1128)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++++.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999864 47899999999999987 4566665
No 388
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=9.3e-37 Score=330.17 Aligned_cols=199 Identities=48% Similarity=0.800 Sum_probs=173.9
Q ss_pred EEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------ecC
Q 001189 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 184 (1128)
Q Consensus 121 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~~~ 184 (1128)
.+.|+.|+|+.+ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 577899999743 57999999999999999999999999999999999999998874321 124
Q ss_pred cEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 185 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
.++|++|++.+++.|++||+.++...+.++..++++.+++.+.++.+|.++++.++....+||||||||++|||||+.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 69999999999999999999987655556667888889998888888999999888889999999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHH-HHcc-ccCCcEEEEEccCccchhcCCEEEEEeCCe
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDR-CIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGM 321 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~-~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 321 (1128)
+++||||||++||+.+.+.+++. ++.. ...|.|+|++||+++.+..||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988872 3433 234799999999999998899999999874
No 389
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-37 Score=332.52 Aligned_cols=193 Identities=29% Similarity=0.431 Sum_probs=159.1
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468999999963 57999999999999999999999999999999999999998875422 13469999
Q ss_pred ecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 190 PQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 190 ~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+|++.++ +.|++||+.++.. .+. +++.++++..++.+..+.. ..+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHHHh
Confidence 9999887 5799999987522 121 2344556666665444333 3589999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeec
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 326 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 326 (1128)
.+|+++||||||++||+.+.+++++.+..... .|+|+|++||+++++.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999986654333 48999999999998764 8999999999998754
No 390
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-37 Score=353.70 Aligned_cols=204 Identities=28% Similarity=0.419 Sum_probs=168.6
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
|+++|++|+|+... ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997321 357999999999999999999999999999999999999999875321 13
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 184 GTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
..|+|++|++.++ +.||+||+.++.. .+. ++..+.++..++.+..+. ...+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR-----------YPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 5699999999987 4799999987521 222 234445555555443332 34689999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|++|||||||++||+.+.+.+++.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999986654433 38999999999999865 89999999999999999998875
Q ss_pred c
Q 001189 334 N 334 (1128)
Q Consensus 334 ~ 334 (1128)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
No 391
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4e-37 Score=335.23 Aligned_cols=198 Identities=27% Similarity=0.407 Sum_probs=162.8
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCC-----CCCCCCcee-------------
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----PPVSDASAV------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~-----~~~~g~~~~------------- 181 (1128)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|++ +|++|.+..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 468999999963 47999999999999999999999999999999999999 888875321
Q ss_pred -ecCcEEEEecCCCCCcccHHHHHhcCCC---C-C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 -IRGTVAYVPQVSWIFNATVRDNILFGSA---F-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 -~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
++..++|++|++.++..||+||+.++.. . . .++..++++..++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 1346999999998888899999987531 1 1 2344556666666544433211 3689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
|++|||||+.+|+++||||||++||+.+.+.+++.+.....+ +|+|++||+++++. .||++++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999866544334 89999999999876 589999999999999887654
No 392
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.8e-37 Score=337.47 Aligned_cols=200 Identities=23% Similarity=0.378 Sum_probs=162.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 186 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 186 (1128)
++++|++++|+. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 46999999999999999999999999999999999999998875321 12459
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCC-------------CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCh
Q 001189 187 AYVPQVSWIFN-ATVRDNILFGSAF-------------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 248 (1128)
Q Consensus 187 ~~v~Q~~~l~~-~Tv~eni~~g~~~-------------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSG 248 (1128)
+|++|++.++. .||+||+.++... .. +++.+.++..++.. .......+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCH
Confidence 99999998876 5999999875311 01 12223333333322 23445678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecC
Q 001189 249 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT 327 (1128)
Q Consensus 249 GQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 327 (1128)
|||||++|||||+.+|+++||||||++||+.+.+++++.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999998665443468999999999999865 89999999999999999
Q ss_pred hhHHhh
Q 001189 328 FEDLSN 333 (1128)
Q Consensus 328 ~~~l~~ 333 (1128)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 887653
No 393
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.5e-37 Score=352.08 Aligned_cols=202 Identities=31% Similarity=0.440 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.|+|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 3789999999963 46999999999999999999999999999999999999999875422 1246999
Q ss_pred EecCCCCCc-ccHHHHHhcCCC-------CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 189 VPQVSWIFN-ATVRDNILFGSA-------FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 189 v~Q~~~l~~-~Tv~eni~~g~~-------~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
|+|++.+|. .||+|||.|+.. .+ .++..++++..++.+..+.. ..+|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHHH
Confidence 999999985 799999998732 12 13445556666665444433 35899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|++|||||||++||+.+++.+.+.+.....+ |.|+|+|||+++++. .||+|++|++|++++.|+++++..+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999998866544333 899999999999865 4899999999999999999988754
No 394
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-37 Score=344.09 Aligned_cols=206 Identities=24% Similarity=0.433 Sum_probs=167.2
Q ss_pred EEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 120 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
++++|++|+|+.+. .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996322 247999999999999999999999999999999999999999874321
Q ss_pred ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 ~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
++..||||+|+| .+|..||.|||.|+.. .+.+ +..++++.+++... .......+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~q 152 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQMR 152 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 234699999997 5788899999998631 2322 23344444444311 123345789999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
|++|||||+.+|+++||||||++||+.+.+++.+.+..... .|+|+|+|||+++++. .||+|++|++|++++.|++++
T Consensus 153 rv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999886544333 4899999999999875 589999999999999999988
Q ss_pred Hhhcc
Q 001189 331 LSNNG 335 (1128)
Q Consensus 331 l~~~~ 335 (1128)
+....
T Consensus 233 ~~~~~ 237 (286)
T PRK13646 233 LFKDK 237 (286)
T ss_pred HHhCH
Confidence 76543
No 395
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.8e-37 Score=347.25 Aligned_cols=203 Identities=26% Similarity=0.427 Sum_probs=167.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 186 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i 186 (1128)
+.++++|++++|+. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..|
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 36999999999963 57999999999999999999999999999999999999999875432 23569
Q ss_pred EEEecCCCCC-cccHHHHHhc-CCC--CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 187 AYVPQVSWIF-NATVRDNILF-GSA--FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 187 ~~v~Q~~~l~-~~Tv~eni~~-g~~--~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
|||||++.++ ..|++||+.+ +.. .+. ++..++++.+++.+..+ ....+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-----------AKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CchhhCCHHHHHHHHHHH
Confidence 9999999887 5799999985 221 121 23334455555443222 223589999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||+.+|++++|||||++||+.+++++++.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999998665544458999999999999865 899999999999999999888543
No 396
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.8e-37 Score=370.55 Aligned_cols=210 Identities=19% Similarity=0.229 Sum_probs=179.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+.. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 8999999999643 59999999999999999999999999999999999999999999999988877676677788999
Q ss_pred EcCCCcc--c-------cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 824 IPQSPVL--F-------SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 824 v~Q~~~l--f-------~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
+||++.+ + ..|+++|+.... ..++++.++++..++.+. ......+||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHHHHHHH
Confidence 9998753 2 348888875421 123345555555555433 333446899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+.+ ||+|++|++|+++..|+++++..
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999988653 6899999999999988 99999999999999999998865
No 397
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-37 Score=354.87 Aligned_cols=202 Identities=30% Similarity=0.407 Sum_probs=169.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4899999999963 46999999999999999999999999999999999999999875432 1345999
Q ss_pred EecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
++|++.+| ..||+|||.|+.. .+ .+++.++++..++.+..+..+ .+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999988 5699999998632 22 234556677777765544433 58999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
+.+|++|||||||++||+.+.+.+.+.+..... .|.|+|+|||+++++. .||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999886654433 3899999999999875 5899999999999999999888654
No 398
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5e-37 Score=353.43 Aligned_cols=203 Identities=27% Similarity=0.415 Sum_probs=171.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCC--CCcee----------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--DASAV----------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~--g~~~~----------~~~~ 185 (1128)
..++++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++ |.+.. .++.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 35899999999963 469999999999999999999999999999999999999998 75432 1346
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
|+||+|++.+| ..||+|||.|+.. .+ .+++.++++..+|.+..+..| .+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHHHH
Confidence 99999999998 5699999998632 22 134556677777765555444 58999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC--CcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||+.+|++||||||||+||+...+++.+.+.....+ |.|+|+|||+++++. .||+|++|++|++++.|+++++..+
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998876554433 789999999999865 5899999999999999999998765
No 399
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=340.26 Aligned_cols=206 Identities=31% Similarity=0.462 Sum_probs=173.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|+++.|+. ..+++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|.+.. .+..|
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 5899999999963 2357999999999999999999999999999999999999999875421 23469
Q ss_pred EEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|++ .+++.||+|||.++.. .+. +++.++++.++|.+.++..| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4567899999987521 122 34566777778776665554 48999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcch
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 336 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 336 (1128)
|||+.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+.+++.....
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 9999999999999999999999999999866544433 899999999999988899999999999999999988766543
No 400
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-36 Score=343.33 Aligned_cols=206 Identities=30% Similarity=0.511 Sum_probs=168.7
Q ss_pred EEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 120 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
++++|++|+|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997422 247999999999999999999999999999999999999999875421
Q ss_pred ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 ~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
.+..|+||+|+| .+++.||+|||.|+.. .+. +++.++++.++|...+ .......|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 123599999998 5788899999988631 222 2345566666664322 12334689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
|++|||||+.+|+++||||||++||+.+...+++.+..... .|.|+|++||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999886554433 4899999999999975 589999999999999999988
Q ss_pred Hhhcc
Q 001189 331 LSNNG 335 (1128)
Q Consensus 331 l~~~~ 335 (1128)
+.+..
T Consensus 233 ~~~~~ 237 (290)
T PRK13634 233 IFADP 237 (290)
T ss_pred HhcCH
Confidence 76553
No 401
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.8e-37 Score=328.56 Aligned_cols=189 Identities=30% Similarity=0.480 Sum_probs=158.6
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------ecCcEEEEecC
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVAYVPQV 192 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~~v~Q~ 192 (1128)
++|++++|+.. +++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 67899999631 57999999999999999999999999999999999999999875432 23469999999
Q ss_pred C--CCCcccHHHHHhcCCC---CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 001189 193 S--WIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267 (1128)
Q Consensus 193 ~--~l~~~Tv~eni~~g~~---~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~il 267 (1128)
+ .++..|++||+.++.. .+.++..++++.+++.+..+..| ..||||||||++|||||+.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCCCEE
Confidence 7 4568899999987632 12346677778887765544433 479999999999999999999999
Q ss_pred EEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEe
Q 001189 268 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 323 (1128)
Q Consensus 268 lLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 323 (1128)
||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999988655443468999999999999874 8999999999874
No 402
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.6e-37 Score=353.51 Aligned_cols=190 Identities=24% Similarity=0.375 Sum_probs=161.2
Q ss_pred CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------e----cCcEEEEecCCCCCc
Q 001189 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------I----RGTVAYVPQVSWIFN 197 (1128)
Q Consensus 134 ~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~----~~~i~~v~Q~~~l~~ 197 (1128)
.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. + +..|+||+|++++|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 357999999999999999999999999999999999999999875421 1 457999999999985
Q ss_pred -ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 001189 198 -ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 269 (1128)
Q Consensus 198 -~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illL 269 (1128)
.||+|||.|+.. .+ .++..++++..+|...++.. ..+|||||||||+|||||+.+|+|+||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-----------p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY-----------PDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 699999998632 12 23445566666665554444 358999999999999999999999999
Q ss_pred eCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 270 DDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 270 DEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||||+||+.+++++++.+..... .++|+|+|||+++++ +.||+|++|++|++++.|+++++..+
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999987765443 489999999999986 45899999999999999999998765
No 403
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.2e-36 Score=331.26 Aligned_cols=204 Identities=26% Similarity=0.446 Sum_probs=172.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|++++|+....+++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 4699999999997433347999999999999999999999999999999999999999875322 1346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
++|++|++.+|..||+||+.++.. ....++.+..+...+.+.++.++.|..+.+.....+|||||||||+|||||+.+|
T Consensus 90 i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p 169 (226)
T cd03248 90 VSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP 169 (226)
T ss_pred EEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999998999999987643 2223333444455677788888877777788889999999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeE
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 322 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 322 (1128)
+++||||||++||+.+.+++.+.+... .+++|+|++||+++++..||+|++|++|++
T Consensus 170 ~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 170 QVLILDEATSALDAESEQQVQQALYDW-PERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999998865543 346899999999999988999999999874
No 404
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-37 Score=304.32 Aligned_cols=216 Identities=27% Similarity=0.413 Sum_probs=184.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC---------
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--------- 813 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~--------- 813 (1128)
.++++|+.++|+.. .+|++||++.++|+.+.|+|-|||||||+++||.=+-.|+.|.|.++|..|.-..
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 48999999999765 6999999999999999999999999999999999999999999999998875321
Q ss_pred ----hHHhhhceEEEcCCCccccc-cHhhccc--cCC--CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 814 ----LMDLRKILGIIPQSPVLFSG-TVRFNLD--PFS--EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 814 ----~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~--~~~--~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
.+.+|.++++|+|+..|++. |+.||.. |.. ..+. +.....|.++|+.+-.+..| ..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence 34468899999999999975 9999984 211 1122 22333455566655444444 57
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
|||||+||++|||||..+|+++++|||||+|||+---.+.+.++++. +|+|+++|||.|.+..+ +.+|+.+.+|.|-|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 99999999999999999999999999999999999999999998876 58999999999999999 99999999999999
Q ss_pred ecChhHHhhcCCC
Q 001189 959 YDTPEELLSNEGS 971 (1128)
Q Consensus 959 ~g~~~~l~~~~~~ 971 (1128)
+|+|+++..++.+
T Consensus 233 ~G~P~qvf~nP~S 245 (256)
T COG4598 233 EGPPEQVFGNPQS 245 (256)
T ss_pred cCChHHHhcCCCC
Confidence 9999999987754
No 405
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-36 Score=353.16 Aligned_cols=203 Identities=30% Similarity=0.460 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 5899999999963 57999999999999999999999999999999999999999875431 23469
Q ss_pred EEEecCCCC-CcccHHHHHhcCCC-----C------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 187 AYVPQVSWI-FNATVRDNILFGSA-----F------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 187 ~~v~Q~~~l-~~~Tv~eni~~g~~-----~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
|||+|++.+ ++.|++||+.++.. + +.+++.++++..++.+..+. ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 68999999988641 1 12345666777777654432 3468999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
+|||||+++|++|||||||++||+.+...+++.+.....+|+|+|++||+++.+. .||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 9999999999999999999999999999998765544446899999999999985 589999999999999999999876
Q ss_pred cc
Q 001189 334 NG 335 (1128)
Q Consensus 334 ~~ 335 (1128)
..
T Consensus 229 ~~ 230 (402)
T PRK09536 229 AD 230 (402)
T ss_pred cH
Confidence 53
No 406
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=9.3e-37 Score=335.87 Aligned_cols=199 Identities=29% Similarity=0.435 Sum_probs=163.8
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 184 (1128)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 357999999999999999999999999999999999999998875321 134
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC------------C---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCh
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSAF------------E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 248 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~------------~---~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSG 248 (1128)
.++|++|++.++ ..||+||+.++... . .+++.++++..++.+.+ .....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 599999999887 47999999875310 1 12344455555554433 234568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeec
Q 001189 249 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 249 GQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 326 (1128)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++++. .||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999886554333 3899999999999985 58999999999999999
Q ss_pred ChhHH
Q 001189 327 TFEDL 331 (1128)
Q Consensus 327 ~~~~l 331 (1128)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 98876
No 407
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-37 Score=331.23 Aligned_cols=198 Identities=30% Similarity=0.430 Sum_probs=162.1
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------ecCcEEEEec
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQ 191 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~Q 191 (1128)
++++|++++|+... .+++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996311 157999999999999999999999999999999999999998875432 2346999999
Q ss_pred CCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 192 VSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 192 ~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
++.++. .|++||+.++.. .+ .+++.+.++..++.+.++..+ .+||||||||++|||||+.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHHHHHcC
Confidence 998875 799999986521 11 234555666666655444333 58999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEe--CCeEeeecCh
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVH--EGMVKEEGTF 328 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~--~G~i~~~g~~ 328 (1128)
|+++||||||++||+.+.+.+++.+..... .++|+|++||+++++. .||++++|+ +|+++++++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999986654333 4899999999999875 589999999 7999987754
No 408
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=5.9e-37 Score=331.80 Aligned_cols=192 Identities=28% Similarity=0.426 Sum_probs=156.7
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------e
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 182 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~ 182 (1128)
++++|++++|+... .+++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996321 157999999999999999999999999999999999999998875421 1
Q ss_pred cCcEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 183 RGTVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
+..++|++|++.++. .||+||+.++.. .+ .+++.++++..++.+.++ ....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 246999999998885 599999987532 11 234455556665544333 33468999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeE
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMV 322 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 322 (1128)
+|||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999886654433 48999999999999888999999999974
No 409
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-36 Score=325.17 Aligned_cols=193 Identities=23% Similarity=0.298 Sum_probs=161.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 789999999964 369999999999999999999999999999999999999999999999998865 34567889999
Q ss_pred EcCCCcccc-ccHhhccccCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~--~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
+||++.++. .|+++|+.+... ..+..+.++++..++. ........+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-----------HLIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-----------hhhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998874 699999874321 1122334444443332 22233345799999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEE
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 950 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~v 950 (1128)
+|||||||++||+.+.+.+.+.|++.. .++|+|++||+.+.+..||.-.+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999864 47899999999999999987654
No 410
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=334.62 Aligned_cols=198 Identities=28% Similarity=0.370 Sum_probs=165.7
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------ecCcEEEEe
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVP 190 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~ 190 (1128)
+.++++|++++|+. +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+.. ++..++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999963 57999999999999999999999999999999999999999876432 234699999
Q ss_pred cCCCCCc-ccHHHHHhcCCCC-CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 191 QVSWIFN-ATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 191 Q~~~l~~-~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
|++.++. .||+||+.++... ..++..++++..++.+..+ ....+||||||||++|||||+.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998875 7999999876321 2345566667776654433 3346899999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||||++||+.+.+.+.+.+..... .++|+|+|||+++++. .||+|++|++|+++++|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999886554323 4799999999999875 58999999999999887654
No 411
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=332.52 Aligned_cols=199 Identities=23% Similarity=0.376 Sum_probs=162.5
Q ss_pred CcEEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------
Q 001189 118 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 181 (1128)
+.++++|++|.|+.+. .+++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 3589999999997422 247999999999999999999999999999999999999998875321
Q ss_pred e-cCcEEEEecCCCCCc-ccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 I-RGTVAYVPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 ~-~~~i~~v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
. +..|+|++|++.++. .|++||+.++. ..+ .++..++++..++.+.. .....+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~q 152 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQ 152 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHH
Confidence 1 146999999998875 59999998631 112 12345556666654333 2334689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecC
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 327 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 327 (1128)
|++|||||+.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++++..+|++++|++|++++.++
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999886554333 5899999999999999889999999999998765
No 412
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-36 Score=327.19 Aligned_cols=195 Identities=23% Similarity=0.326 Sum_probs=163.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|++ +++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 4999999999964 3699999999999999999999999999999999999999999999999988652 3456799
Q ss_pred EEcCCCccccc-cHhhccccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~----~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|+||++.++.. |+++|+.... ...++.+.+.++..++. .........||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-----------GYEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-----------hhccCChhhCCHHHHHHHHHHHHHhc
Confidence 99999988876 9999985421 11123334444444433 22333446799999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeC
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDS 953 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~ 953 (1128)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998754 46899999999999987 999999874
No 413
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=332.41 Aligned_cols=203 Identities=25% Similarity=0.400 Sum_probs=168.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++|+|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4889999999963 57999999999999999999999999999999999999999875421 23469
Q ss_pred EEEecCCCCCcccHHHHHhcCCCC---CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
+|++|++.++..|++||+.++... ..++..+.++..++.... .......||||||||++|||||+.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999989999999876322 223455556666664211 1234568999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++++.. ||+|++|++|++++.|+.+++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999999886554333 48999999999999764 899999999999999999887654
No 414
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-36 Score=335.14 Aligned_cols=200 Identities=28% Similarity=0.452 Sum_probs=163.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 184 (1128)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999963 257999999999999999999999999999999999999998875321 134
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC------------CC---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCh
Q 001189 185 TVAYVPQVSWIFN-ATVRDNILFGSA------------FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 248 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~-~Tv~eni~~g~~------------~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSG 248 (1128)
.++|+||++.+|. .||+||+.++.. .. .++..++++..++... ....+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 5999999998875 799999986421 01 1233344444544332 2345578999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeec
Q 001189 249 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 249 GQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 326 (1128)
|||||++|||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999886654433 4899999999999987 58999999999999999
Q ss_pred ChhHHh
Q 001189 327 TFEDLS 332 (1128)
Q Consensus 327 ~~~~l~ 332 (1128)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988763
No 415
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.9e-36 Score=323.68 Aligned_cols=190 Identities=24% Similarity=0.414 Sum_probs=160.7
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
..++++|++++|+.. .+++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 458999999999742 247999999999999999999999999999999999999999875432 2356
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
|+|++|+|.+++.|++||+.+...++.+++.+.++ ++.....|||||+||++|||||+.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999899999998654444333333222 234567899999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecC
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 327 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 327 (1128)
++||||||++||+.+.+.+++.+... .+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999998865543 45899999999999988899999999999988775
No 416
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-36 Score=338.65 Aligned_cols=202 Identities=32% Similarity=0.451 Sum_probs=168.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 186 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 186 (1128)
++++|++++|+. .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. ++..+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 356999999999999999999999999999999999999998875321 13459
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVSW--IFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~~--l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|+|. +++.|++|||.++.. .+ .+++.++++..++.+..+. ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHH
Confidence 99999986 467899999987631 12 2334555666666554433 3468999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||+.+|+++||||||++||+.+.+.+++.+.....+|.|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999988665444458999999999999988999999999999999998887544
No 417
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-36 Score=332.71 Aligned_cols=203 Identities=28% Similarity=0.440 Sum_probs=165.8
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
++++|++++|+... .+++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996321 127999999999999999999999999999999999999998875321 13
Q ss_pred CcEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 184 GTVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
..++|+||++.+|. .|++||+.++.. .+ .++..+.++..++.+.++. ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 46999999999885 799999986421 22 1234455555565544333 33689999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999998866544333 8999999999999865 89999999999999998877643
No 418
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=330.13 Aligned_cols=198 Identities=24% Similarity=0.380 Sum_probs=163.9
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 188 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 188 (1128)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 478999999963 57999999999999999999999999999999999999999875421 1346999
Q ss_pred EecCCCCCc-ccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
++|++.++. .|++||+.++. ..+ .++..+.++..++.+..+.. ..+||||||||++|||||
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999998875 69999997641 111 23455667777776544433 358999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
+.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++++.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999998866544444 8899999999999865 899999999999998887653
No 419
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=339.57 Aligned_cols=204 Identities=25% Similarity=0.429 Sum_probs=170.0
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 184 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 184 (1128)
.++++|++|+|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. ++.
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 6899999999962 357999999999999999999999999999999999999999874321 234
Q ss_pred cEEEEecCC--CCCcccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 185 TVAYVPQVS--WIFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 185 ~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
.++|++|+| .+++.||+||+.++.. .. .+++.++++.+++.+..+ ....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHH
Confidence 699999998 5678999999987521 22 134555666677654332 345689999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|++|||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999998865544333 899999999999987 599999999999999999998876
Q ss_pred cc
Q 001189 334 NG 335 (1128)
Q Consensus 334 ~~ 335 (1128)
..
T Consensus 232 ~~ 233 (283)
T PRK13636 232 EK 233 (283)
T ss_pred CH
Confidence 54
No 420
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=318.69 Aligned_cols=215 Identities=24% Similarity=0.488 Sum_probs=185.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.+++++|+++|++. .|++|+||+++||++.|++|||||||||++++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 38999999999754 79999999999999999999999999999999999999999999999998865 5678999
Q ss_pred EEcCCCccccc-cHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+|.+..|+.. ||.|.|.++++ ....++.+ .+..|++++. +--.-......||-|++|++.+--+++++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~--i~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLE--IVGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhcc--ccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 99999999965 99999877643 33444432 2445666653 22223344567999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~ 970 (1128)
|+++|||||.|||||.+.+.+.+.+.++. +|.|||+.||+|+-++. ||+++.|++|+.|-+|+.++..+..+
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999876 58999999999999998 99999999999999999999987543
No 421
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2e-36 Score=325.12 Aligned_cols=193 Identities=23% Similarity=0.376 Sum_probs=162.4
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
++++|++++|+. +++|+++||++++|++++|+|+||||||||+++|+|+.+|++|.+.. .+..++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 468999999962 57999999999999999999999999999999999999998875322 13469999
Q ss_pred ecCCCCC-cccHHHHHhcCC---CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 190 PQVSWIF-NATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 190 ~Q~~~l~-~~Tv~eni~~g~---~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+|++.++ +.|++||+.++. ..+.++..++++..++.+..+. ....||||||||++|||||+.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999887 689999997652 1245566677777777655433 345899999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeec
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 326 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 326 (1128)
++||||||++||+.+.+.+++.+.....+|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999988655443468999999999999864 8999999999998754
No 422
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1e-36 Score=297.69 Aligned_cols=206 Identities=27% Similarity=0.356 Sum_probs=173.5
Q ss_pred cEEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---h
Q 001189 743 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 817 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 817 (1128)
.|+++++++..+.. .-.+|++|+|.|++||.+|||||||||||||+-+|.|+-+|++|+|.+.|.++.+++-+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 48888888877532 236899999999999999999999999999999999999999999999999999988654 3
Q ss_pred h-hceEEEcCCCcccc-ccHhhcccc-C---CC-C--CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 818 R-KILGIIPQSPVLFS-GTVRFNLDP-F---SE-H--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 818 r-~~i~~v~Q~~~lf~-~Tv~~nl~~-~---~~-~--~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
| +++|+|+|...|.. .|-.||+.. . .+ . ....-.+.|+++|+.+-+...| .+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 4 57999999998774 599999852 1 11 1 1222445566666655554444 6899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 959 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~ 959 (1128)
++||||+...|+||+-||||-+||.+|-+.|-+.+.++. .+.|.++||||.....+|||++-|.+|++++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999998765 36899999999999999999999999999763
No 423
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=350.48 Aligned_cols=204 Identities=25% Similarity=0.409 Sum_probs=170.4
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcE
Q 001189 117 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTV 186 (1128)
Q Consensus 117 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i 186 (1128)
.+.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+.+|++|.+.. .++.|
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346999999999963 46999999999999999999999999999999999999999875421 23469
Q ss_pred EEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 187 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 187 ~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
|||+|++.+| ..||.|||.|+.. .+. +++.+.++..++.+..+..| .+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 9999999998 5699999998732 222 34455566666655444433 589999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||+.+|++||||||||+||+.+++.+.+.+.+... .|.|+|+|||+++++ ..||+|++|++|++++.|+++++..+
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 99999999999999999999999998876554333 489999999999986 45999999999999999999988765
No 424
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=375.66 Aligned_cols=220 Identities=24% Similarity=0.355 Sum_probs=177.8
Q ss_pred cEEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC----------
Q 001189 743 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA---------- 810 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~---------- 810 (1128)
.|+++|++++|+.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 59999999999632 236999999999999999999999999999999999999999999999997552
Q ss_pred CCChH---Hhh-hceEEEcCCC--cccc-ccHhhccccCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhh
Q 001189 811 KFGLM---DLR-KILGIIPQSP--VLFS-GTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVS 875 (1128)
Q Consensus 811 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~Tv~~nl~~~~----~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~ 875 (1128)
+.+.. .+| +.|+||+|+| .++. .||++|+.+.. .... +++.++++.+++.+ .+....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------~~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE--------AQTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC--------hhhHHh
Confidence 22222 233 4799999998 5665 49999986421 1122 22333444433311 012344
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-C-CcEEEEeecCchhhhh-cCEEEEEe
Q 001189 876 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLD 952 (1128)
Q Consensus 876 e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~-~~Tvi~vtH~l~~~~~-~D~i~vl~ 952 (1128)
....+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. + ++|||+|||+++.+.. ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 5557899999999999999999999999999999999999999999999875 3 7899999999999987 99999999
Q ss_pred CCEEEEecChhHHhhcCC
Q 001189 953 SGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 953 ~G~i~~~g~~~~l~~~~~ 970 (1128)
+|+|++.|+++++...+.
T Consensus 244 ~G~i~~~g~~~~~~~~~~ 261 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQ 261 (623)
T ss_pred CCeecccCCHHHhhcCCC
Confidence 999999999999976443
No 425
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=368.18 Aligned_cols=211 Identities=26% Similarity=0.368 Sum_probs=174.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHhhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i 821 (1128)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.|
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999964 369999999999999999999999999999999999999999999999999876543 3457789
Q ss_pred EEEcCCCccccc-cHhhccccCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
+|+||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |++........+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 999999988875 99999975311 1111111 1123344443 33333344556899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
|+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.+++
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999864 47899999999999987 999999999999977654
No 426
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=367.55 Aligned_cols=212 Identities=22% Similarity=0.359 Sum_probs=176.3
Q ss_pred EEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH-HhhhceEEE
Q 001189 746 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILGII 824 (1128)
Q Consensus 746 ~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i~~v 824 (1128)
++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 3699999999999999999999999999999999999999999999999998765543 356789999
Q ss_pred cCCCccccc-cHhhccccCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 825 PQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 825 ~Q~~~lf~~-Tv~~nl~~~~~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
||++.++.. |+++|+.+... ....+..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 999987754 99999974311 11121111 123344443 45444455567899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999998864 47899999999999987 9999999999999999988763
No 427
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2e-36 Score=343.26 Aligned_cols=201 Identities=25% Similarity=0.394 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 187 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 187 (1128)
.++++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..+|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 5899999999963 56999999999999999999999999999999999999999875432 245699
Q ss_pred EEecCCCCC-cccHHHHHhcC-C--CCCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFG-S--AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g-~--~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
|+||++.++ ..|++||+.+. . ..+.. +..++++..++.+.. .....+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHHH
Confidence 999999887 57999999742 1 12222 233344445544322 22346899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|+.+|+++||||||++||+.+.+++++.+.....+|+|+|++||+++++. .||+|++|++|+++..|+++++..
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999866554446899999999999986 489999999999999999988754
No 428
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.9e-36 Score=372.94 Aligned_cols=97 Identities=25% Similarity=0.439 Sum_probs=88.3
Q ss_pred Ccch-hhhcCCCCCChhHHHHHHHHHHhcc---CCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhh
Q 001189 869 GLDA-QVSEAGENFSVGQRQLLSLSRALLR---RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 943 (1128)
Q Consensus 869 Gldt-~v~e~g~~LSgGqrqrl~lArall~---~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~ 943 (1128)
|++. .+++...+|||||+||++|||+|++ +|+++||||||++||+.+...+++.|+++. ++.|||+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5654 3677788999999999999999997 599999999999999999999999999875 4789999999999998
Q ss_pred hcCEEEEE------eCCEEEEecChhHH
Q 001189 944 DCDRILLL------DSGRVLEYDTPEEL 965 (1128)
Q Consensus 944 ~~D~i~vl------~~G~i~~~g~~~~l 965 (1128)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999886
No 429
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.2e-36 Score=330.45 Aligned_cols=200 Identities=24% Similarity=0.385 Sum_probs=162.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 186 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 186 (1128)
++++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|.++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468999999963 47999999999999999999999999999999999999998875321 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 187 AYVPQVSWIFN-ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 187 ~~v~Q~~~l~~-~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
+|++|++.++. .|++||+.++.. ... +++.+.++..++.+. ......+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHH
Confidence 99999998886 599999986521 111 123334444444332 33445689999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
||+.+|++|||||||++||+.+.+.+++.+.....+++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998865544445899999999998766 489999999999999999887754
No 430
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.8e-36 Score=368.19 Aligned_cols=219 Identities=25% Similarity=0.437 Sum_probs=177.9
Q ss_pred cEEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEECCEecCCCChH
Q 001189 743 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-----~~G~I~i~g~~i~~~~~~ 815 (1128)
.|+++|++++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999631 24699999999999999999999999999999999999987 799999999999876654
Q ss_pred H---hh-hceEEEcCCCc--ccc-ccHhhccccC----CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 816 D---LR-KILGIIPQSPV--LFS-GTVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 816 ~---~r-~~i~~v~Q~~~--lf~-~Tv~~nl~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
. .| +.++|+||++. ++. .|+++|+... ..... +++.++++..++.+. .........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------~~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQA--------AKRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhhCCcc
Confidence 3 33 57999999985 443 4888887521 11111 233444444444211 0123444568
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEE
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 957 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~ 957 (1128)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999864 37899999999999887 9999999999999
Q ss_pred EecChhHHhhcC
Q 001189 958 EYDTPEELLSNE 969 (1128)
Q Consensus 958 ~~g~~~~l~~~~ 969 (1128)
+.|+++++....
T Consensus 237 ~~g~~~~~~~~~ 248 (529)
T PRK15134 237 EQNRAATLFSAP 248 (529)
T ss_pred EeCCHHHHhhCC
Confidence 999999987643
No 431
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.6e-36 Score=327.18 Aligned_cols=189 Identities=31% Similarity=0.530 Sum_probs=156.1
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------ecCcEEEEecCCC
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQVSW 194 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~Q~~~ 194 (1128)
++|++++|+. +++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 6789999963 46999999999999999999999999999999999999999876432 1346999999987
Q ss_pred C---CcccHHHHHhcCCCC-----------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 195 I---FNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 195 l---~~~Tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
+ ++.||+||+.++... ..+++.++++..++.+.++. ...+||||||||++|||||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHHH
Confidence 6 568999999875321 12345566777777654443 2358999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeee
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEE 325 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 325 (1128)
+.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||+|++|++| +++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 99999999999999999999999988665544468999999999999865 8999999886 4443
No 432
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=334.59 Aligned_cols=206 Identities=23% Similarity=0.361 Sum_probs=167.5
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~~----------- 181 (1128)
+.++++|++++|+. +++|+++||++++|++++|+|+||||||||+++|+|+++ |++|.+..
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 46999999999963 479999999999999999999999999999999999864 46664321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC---C-C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGSA---F-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
++..++|++|++.+|..||+||+.++.. . . .+++.++++.+++.+.+. +..+....+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 1346999999999988899999987521 1 1 234445566666543322 12345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|++|||||||++||+.+.+++++.+... .+++|+|++||+++++. .||+|++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998865543 45789999999999985 58999999999999999988
Q ss_pred HHhhc
Q 001189 330 DLSNN 334 (1128)
Q Consensus 330 ~l~~~ 334 (1128)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 87643
No 433
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.3e-36 Score=328.15 Aligned_cols=200 Identities=29% Similarity=0.502 Sum_probs=160.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 186 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 186 (1128)
++++|++++|+. +++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468999999963 47999999999999999999999999999999999999999875321 13459
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCC--H---HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 187 AYVPQVSWIFN-ATVRDNILFGSAFE--P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 187 ~~v~Q~~~l~~-~Tv~eni~~g~~~~--~---~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
+|++|++.++. .|++||+.++.... . ++..++++.. ..++ ........+||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~----~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLK----ERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhh----hhhhCchhhCCHHHHHHHHHHHHH
Confidence 99999998886 59999998763221 1 1122222222 1111 123345578999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHh
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
+.+|+++||||||++||+.+.+.+++.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999998665443468999999999998754 8999999999999999877654
No 434
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.1e-36 Score=346.14 Aligned_cols=203 Identities=25% Similarity=0.426 Sum_probs=167.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcE
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 186 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i 186 (1128)
..|+++|++++|+. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..|
T Consensus 40 ~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 46999999999963 57999999999999999999999999999999999999999875432 23469
Q ss_pred EEEecCCCCC-cccHHHHHhc-CCC--CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 187 AYVPQVSWIF-NATVRDNILF-GSA--FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 187 ~~v~Q~~~l~-~~Tv~eni~~-g~~--~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
||+||++.++ ..|++||+.+ +.. .+. ++..++++.+++.+.. .....+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHHHH
Confidence 9999999886 6899999975 211 121 2233344444443222 2334689999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||+.+|+++||||||++||+.+++++++.+......|+|+|++||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999998765544468999999999999865 899999999999999999987643
No 435
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.9e-36 Score=327.73 Aligned_cols=196 Identities=23% Similarity=0.397 Sum_probs=160.2
Q ss_pred EEEEeEEEEeCCCCC-CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~-~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 187 (1128)
++++|++++|+.... +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++..++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 689999999974211 27999999999999999999999999999999999999999875422 234699
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
|++|++.+|. .||+||+.+... .+ .+++.++++..++.+.++ ....+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHHH
Confidence 9999998886 599999975321 11 233455566666654433 3456899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeec
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 326 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 326 (1128)
|+.+|+++||||||++||+.+.+.+++.+.....+|+|+|+|||+++++.. ||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999988665444458999999999998764 8999999999998654
No 436
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.9e-36 Score=326.64 Aligned_cols=193 Identities=31% Similarity=0.457 Sum_probs=158.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999963 47999999999999999999999999999999999999998875321 12359999
Q ss_pred ecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 190 PQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 190 ~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+|++.++ ..|++||+.++.. ... +++.++++..++.+..+. ...+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 9999887 5799999987521 222 233445566666544433 33589999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeec
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 326 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 326 (1128)
.+|+++||||||++||+.+.+++++.+..... .|+|+|++||+++++.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999986654433 48999999999998765 8999999999998765
No 437
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-36 Score=334.49 Aligned_cols=205 Identities=30% Similarity=0.441 Sum_probs=169.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|+++.|+. +++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..
T Consensus 6 ~~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 36899999999963 2357999999999999999999999999999999999999998875321 2446
Q ss_pred EEEEecCCC--CCcccHHHHHhcCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
|+|++|+|. ++..||+||+.++.. ++.+ +..++++..++.+.++.. ..+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHH
Confidence 999999984 457899999987521 2322 244556666666554433 36899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|++|||||||++||+.+.+.+++.+.....+ ++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999866544334 5899999999999888999999999999999998887654
No 438
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-36 Score=336.32 Aligned_cols=204 Identities=25% Similarity=0.403 Sum_probs=170.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC--Ccee-------------ec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD--ASAV-------------IR 183 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g--~~~~-------------~~ 183 (1128)
.++++|++|.|+.. .+++|+++||+|++|++++|+|+||||||||+++|+|+++|++| +.+. .+
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999632 35799999999999999999999999999999999999999873 2222 23
Q ss_pred CcEEEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 184 GTVAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 184 ~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
..|||++|+|. +++.||+|||.++.. .+. +++.++++.+++.+..+..| .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 46999999984 568899999987622 222 33556677777766555444 58999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
+|||||+.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999886654433 3899999999999998899999999999999999988765
Q ss_pred c
Q 001189 334 N 334 (1128)
Q Consensus 334 ~ 334 (1128)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
No 439
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-36 Score=338.39 Aligned_cols=206 Identities=26% Similarity=0.447 Sum_probs=166.9
Q ss_pred cEEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------
Q 001189 119 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 181 (1128)
.++++|++++|+... .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997321 257999999999999999999999999999999999999999875321
Q ss_pred -ecCcEEEEecCC--CCCcccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 182 -IRGTVAYVPQVS--WIFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 182 -~~~~i~~v~Q~~--~l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
.+..|+|++|+| .++..|++|||.++. .... +++.++++.+++.... ......+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHHH
Confidence 123599999998 467889999998752 1222 2344455556654211 1234468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhH
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||++|||||+.+|++|||||||++||+.+.+++.+.+.....+|.|+|++||+++++. .||+|++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999998865544345899999999999876 589999999999999999988
Q ss_pred Hhhc
Q 001189 331 LSNN 334 (1128)
Q Consensus 331 l~~~ 334 (1128)
+...
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 7654
No 440
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-36 Score=336.32 Aligned_cols=206 Identities=28% Similarity=0.415 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCCCC---CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------e
Q 001189 119 AISIRNGYFSWDSKA---ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------I 182 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~---~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~ 182 (1128)
.++++|++++|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997421 357999999999999999999999999999999999999999875321 2
Q ss_pred cCcEEEEecCCC--CCcccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 183 RGTVAYVPQVSW--IFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 183 ~~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
+..++|++|+|. ++..|+.||+.|+.. .+ .+++.++++.+++.+.++..+ .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 346999999984 567799999998631 12 234566777778876655544 5899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHh
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
++|||||+.+|+++||||||++||+.+.+.+.+.+..... .|.|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999886554333 489999999999998889999999999999999999886
Q ss_pred hcc
Q 001189 333 NNG 335 (1128)
Q Consensus 333 ~~~ 335 (1128)
...
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 553
No 441
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=332.65 Aligned_cols=206 Identities=24% Similarity=0.366 Sum_probs=167.3
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-----~g~~~~----------- 181 (1128)
+.++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|.+..
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36999999999963 46999999999999999999999999999999999999874 553211
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC----CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
.+..|+|++|++.++..||+|||.++.. .+ .++..++++.+++.+.+. + .......+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---D----KLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---H----HHhCCcccCCHHH
Confidence 2346999999999988999999987632 11 123344555555532221 1 1233567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++++.. ||+|++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998865544 457899999999999754 8999999999999999998
Q ss_pred HHhhc
Q 001189 330 DLSNN 334 (1128)
Q Consensus 330 ~l~~~ 334 (1128)
++.++
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 88644
No 442
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.1e-36 Score=367.23 Aligned_cols=213 Identities=23% Similarity=0.406 Sum_probs=175.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEecCCCChHH-hhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i~~~~~~~-~r~~ 820 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+.
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999964 3699999999999999999999999999999999999987 7999999999998776544 4567
Q ss_pred eEEEcCCCccccc-cHhhccccCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~~-------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v-~e~g~~LSgGqrqrl~l 891 (1128)
++|+||++.+|.. |+++|+.+... ...++.. ..+.+.++.+ |++... .....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999988765 99999864321 1111111 1123334443 332221 22345799999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++++.. ||+|++|++|++++.|+++++
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999998864 47899999999999987 999999999999999988765
No 443
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-36 Score=322.38 Aligned_cols=193 Identities=25% Similarity=0.319 Sum_probs=163.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .. .|+.++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHY 77 (207)
T ss_pred EEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEE
Confidence 789999999964 369999999999999999999999999999999999999999999999998752 22 7888999
Q ss_pred EcCCCccc-cccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLF-SGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf-~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
++|++.++ ..|+++|+.+.. ...++++.++++..++.+... ....+||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 99988776 569999986422 223445666777766654332 223479999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeC
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDS 953 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~ 953 (1128)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++++.. |+++-++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999998753 57899999999999988 99987743
No 444
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-36 Score=335.84 Aligned_cols=206 Identities=22% Similarity=0.341 Sum_probs=171.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+....+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 589999999997433346999999999999999999999999999999999999999875421 23469
Q ss_pred EEEecCCC--CCcccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVSW--IFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~~--l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|+|. ++..||.|||.++. .... +++..+++.+++.+..+. ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999984 56889999998752 1222 234556677777654433 3358999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|||+.+|+++||||||++||+.+.+.+.+.+.....+ |.|+|++||+++++..||+|++|++|++++.|+++++....
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 9999999999999999999999999998865544333 89999999999999889999999999999999998887553
No 445
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=332.02 Aligned_cols=205 Identities=21% Similarity=0.331 Sum_probs=168.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC---CCCCCcee------------ec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP---PVSDASAV------------IR 183 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~---~~~g~~~~------------~~ 183 (1128)
.|+++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++ |++|.+.. .+
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 579999999999999999999999999999999999974 56664321 23
Q ss_pred CcEEEEecCCCCCcccHHHHHhcCCCC---------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 184 GTVAYVPQVSWIFNATVRDNILFGSAF---------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~~~Tv~eni~~g~~~---------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
..|+|+||++.+|..|++||+.++... ..+++.++++.+++.+.+.. .....+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 469999999999989999999875211 11234556666666543322 23445678999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
+|||||+.+|+++||||||++||+.+..++++.+... .+++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999998865443 35899999999999876 589999999999999999888764
Q ss_pred c
Q 001189 334 N 334 (1128)
Q Consensus 334 ~ 334 (1128)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
No 446
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-36 Score=337.70 Aligned_cols=200 Identities=28% Similarity=0.402 Sum_probs=165.2
Q ss_pred EEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------ecC
Q 001189 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 184 (1128)
Q Consensus 121 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~~~ 184 (1128)
.++|+++.|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567777775 357999999999999999999999999999999999999998875321 124
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.++|++|++.++ +.|++||+.++.. .+ .+++.++++..++.+.++..+ .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 699999999887 5799999987421 11 234556677777766555444 4799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999886554333 4899999999999875 5899999999999999999888654
No 447
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.9e-36 Score=331.62 Aligned_cols=203 Identities=27% Similarity=0.394 Sum_probs=165.3
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCCcee-------------
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAV------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-----~g~~~~------------- 181 (1128)
++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|.+..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 46999999999999999999999999999999999999987 764321
Q ss_pred -ecCcEEEEecCCCCCcccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 -IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 -~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
.+..++|+||++.++..|++||+.++.. .+. ++..++++..++...+. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 1346999999999988999999987521 111 23445555566642221 1223445789999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|++|||||+.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998755443 33589999999999876 5899999999999999998887
Q ss_pred hh
Q 001189 332 SN 333 (1128)
Q Consensus 332 ~~ 333 (1128)
..
T Consensus 231 ~~ 232 (247)
T TIGR00972 231 FT 232 (247)
T ss_pred Hh
Confidence 54
No 448
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.1e-36 Score=326.86 Aligned_cols=193 Identities=24% Similarity=0.419 Sum_probs=157.5
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ec
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 183 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 183 (1128)
++++|++++|+... .+++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996322 247999999999999999999999999999999999999998875421 11
Q ss_pred -CcEEEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 184 -GTVAYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 184 -~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
..++|++|++.++ ..|++||+.++. ..+ .+++.+.++..++.+.++ .....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 4699999999887 579999998642 122 123444555555544333 23468999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEe
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVK 323 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 323 (1128)
+|||||+.+|++|||||||++||+.+.+.+.+.+..... .++|+|++||+++++..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999886554333 479999999999999889999999999875
No 449
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4e-36 Score=329.21 Aligned_cols=201 Identities=20% Similarity=0.369 Sum_probs=164.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----e-------cCcEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I-------RGTVAY 188 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----~-------~~~i~~ 188 (1128)
++++|++++|+. +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+.. + +..++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 689999999963 57999999999999999999999999999999999999999875421 1 135999
Q ss_pred EecCCCC-CcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWI-FNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l-~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
++|++.+ +..|++||+.++.. ... ++..+.++..++.. .......+||||||||++|||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 47899999986421 221 12233344444432 23445578999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
+.+|+++||||||++||+.+.+.+++.+.... .+|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999998665443 258999999999999988999999999999999998877543
No 450
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.3e-36 Score=326.42 Aligned_cols=199 Identities=27% Similarity=0.503 Sum_probs=163.6
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 188 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 188 (1128)
++++|+++.|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999632 257999999999999999999999999999999999999998875421 2345999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
++|++.++ ..|++||+.+.. .... +++.++++..++.+..+ ....+||||||||++|||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99999887 689999998642 1121 34455666666654433 22358999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
+.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999998865443 346899999999999865 899999999999999987664
No 451
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-36 Score=311.45 Aligned_cols=212 Identities=25% Similarity=0.439 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|++..|.. -.+|++|||++++||+++|+|+||+||||||++|+|..++.+|.+.. .+..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 5899999999973 47999999999999999999999999999999999999998775432 2345
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
|+||||.-.+| ..||.||+.+|......+ ......+++..+.+|.- ......++.+|||||+|-+||||||.++|
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~---~~~~~~~e~v~~lFP~L-ker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDK---EAQERDLEEVYELFPRL-KERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccc---ccccccHHHHHHHChhH-HHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 99999999998 689999999884322110 00111144455566642 23456778899999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHhhcchH
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSNNGEL 337 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 337 (1128)
++|+|||||.+|-|...+.|++.+.....+ |.||++|-++..+. +.+||.++|++|+|+.+|+.+++..+...
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v 230 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDV 230 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHH
Confidence 999999999999999999999976655434 67999999998884 56899999999999999999999877543
No 452
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-36 Score=321.57 Aligned_cols=197 Identities=29% Similarity=0.469 Sum_probs=172.6
Q ss_pred cEEEEEEEEEeCCCC-------CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001189 743 SIKFEDVVLRYRPEL-------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 815 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~-------~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~ 815 (1128)
.++++|+++.|+... ..+++||||+|++||++||||.|||||||+-++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 388999999996421 36899999999999999999999999999999999999999999999999987654
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~-~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
.....+++.+.|+.+++.+ ++.+.| ..||||||||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHH
Confidence 1112456888888888754 555655 5799999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+-+|+++++|||||+||...++.|...|.++. .+-|.++||||++.+.. ||||.||..|+|+|.|..+++..++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999998865 37899999999999999 999999999999999999999998877
Q ss_pred chHHHHHh
Q 001189 972 SFSKMVQS 979 (1128)
Q Consensus 972 ~~~~~~~~ 979 (1128)
.|.+..-+
T Consensus 204 pYTk~Ll~ 211 (268)
T COG4608 204 PYTKALLS 211 (268)
T ss_pred HHHHHHHH
Confidence 77765544
No 453
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.5e-36 Score=320.74 Aligned_cols=192 Identities=22% Similarity=0.303 Sum_probs=160.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999987764 356788999
Q ss_pred EcCCCcccc-ccHhhccccCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 824 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 824 v~Q~~~lf~-~Tv~~nl~~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+||++.+|. .|+++|+.+... ..+..+.++++..++.+++. ....+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998886 599999864321 11334666666666654432 333579999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEE
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 950 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~v 950 (1128)
++|||||||++||+.+.+.+++.|++.. ++.|+|++||+...+ .|++++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999999863 578999999998443 3566654
No 454
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.1e-36 Score=333.16 Aligned_cols=202 Identities=31% Similarity=0.450 Sum_probs=164.9
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------------
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------- 181 (1128)
.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 4899999999963 47999999999999999999999999999999999999998875321
Q ss_pred ---ecCcEEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChH
Q 001189 182 ---IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 249 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGG 249 (1128)
++..++|++|++.++ ..|++||+.++. .... +++.+.++..++... ......+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 234699999999887 479999997641 1121 223334444444322 23345789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecCh
Q 001189 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 328 (1128)
Q Consensus 250 QkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 328 (1128)
||||++|||||+.+|++|||||||++||+.+.+.+++.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+.
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999988654443458999999999999865 899999999999999998
Q ss_pred hHHhhc
Q 001189 329 EDLSNN 334 (1128)
Q Consensus 329 ~~l~~~ 334 (1128)
+++.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 887543
No 455
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.8e-36 Score=325.78 Aligned_cols=196 Identities=24% Similarity=0.379 Sum_probs=161.9
Q ss_pred CcEEEEeEEEEeCCCCC-CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----e----------
Q 001189 118 PAISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I---------- 182 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~-~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----~---------- 182 (1128)
+.++++|++++|+.... .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 36899999999974221 35999999999999999999999999999999999999999875421 0
Q ss_pred --cCcEEEEecCCCCCc-ccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 183 --RGTVAYVPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 183 --~~~i~~v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
+..++|++|++.++. .|+.||+.++. ..+ .+++.++++..++.+.++..+ ..|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHH
Confidence 246999999998875 69999997642 111 234556677777765554433 479999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEee
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 324 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 324 (1128)
|++|||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++++..||++++|++|++++
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999886654433 3889999999999988899999999999875
No 456
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5e-36 Score=334.58 Aligned_cols=203 Identities=23% Similarity=0.353 Sum_probs=166.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------e
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 182 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~ 182 (1128)
+.++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 36899999999962 57999999999999999999999999999999999999998875321 1
Q ss_pred cCcEEEEecCCCCCc-ccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 183 RGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
+..++|++|++.++. .||.||+.++. ..+. ++..+.++..++.+..+ ....+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 345999999999886 59999998641 1222 12334455555543332 2346899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
++|||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++++.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999886554333 37999999999998865 899999999999999999988
Q ss_pred hhc
Q 001189 332 SNN 334 (1128)
Q Consensus 332 ~~~ 334 (1128)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 754
No 457
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-36 Score=330.59 Aligned_cols=203 Identities=27% Similarity=0.423 Sum_probs=163.7
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|++++|+.. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999731 56999999999999999999999999999999999999998875321 134699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
|++|++.++ ..||+||+.++.. .+. ++..++++..++.. .........+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 999999888 5799999987521 121 23334444444432 001234457899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|+.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999886655433 3899999999999865 589999999999999999887754
No 458
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-36 Score=323.07 Aligned_cols=193 Identities=24% Similarity=0.414 Sum_probs=158.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------ecCcEEEEec
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------IRGTVAYVPQ 191 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------~~~~i~~v~Q 191 (1128)
++++|+++.|+. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999962 57999999999999999999999999999999999999998875432 2346999999
Q ss_pred CCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 192 VSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 192 ~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
++.++. .|++||+.+... .. .+++.+.++..++...++ ....+||||||||++|||||+.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHHHhcC
Confidence 998875 699999976421 11 223444555555544332 34468999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeec
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 326 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 326 (1128)
|+++||||||++||+.+.+++.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999988665444458899999999998864 8999999999988653
No 459
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-35 Score=333.25 Aligned_cols=204 Identities=29% Similarity=0.450 Sum_probs=169.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+. .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 3 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 4889999999963 246999999999999999999999999999999999999999875421 12359
Q ss_pred EEEecCCC--CCcccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 187 AYVPQVSW--IFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 187 ~~v~Q~~~--l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
+|++|++. +++.||+||+.++. ..+. +++.++++..++.+.++..+ ..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 99999973 67889999998653 2332 23456666677765554433 58999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
|||+.+|+++||||||++||+.+.+.+++.+..... .|.|+|++||+++++. .||+|++|++|++++.|+++++....
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 999999999999999999999999999886554433 3899999999999985 68999999999999999999886543
No 460
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.7e-36 Score=328.34 Aligned_cols=201 Identities=29% Similarity=0.452 Sum_probs=165.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecCc
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 185 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~ 185 (1128)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 57999999999999999999999999999999999999999875321 1335
Q ss_pred EEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
++|++|++.++ ..||+||+.++. ..+. +++.++++..++...++ .....||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----------HYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----------cChhhcCHHHHHHHHH
Confidence 99999999887 579999998752 1121 23344455555543333 3346899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|+++||||||++||+.+.+++.+.+.....+++|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999988654433458999999999999865 899999999999999998887543
No 461
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-36 Score=335.92 Aligned_cols=205 Identities=24% Similarity=0.421 Sum_probs=165.5
Q ss_pred EEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 120 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
++++|++++|+... .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 146999999999999999999999999999999999999998875321
Q ss_pred ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCHHH----HHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 ~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
++..|+|++|++ .+++.||+||+.++.. .+.++ ..++++..++... .......+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 124599999998 5778899999987521 22222 2333444444321 123345689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|++|||||+.+|++|||||||++||+.+.+.+++.+......|+|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998866544345899999999999886 5899999999999999998887
Q ss_pred hhc
Q 001189 332 SNN 334 (1128)
Q Consensus 332 ~~~ 334 (1128)
...
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 654
No 462
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-36 Score=328.27 Aligned_cols=200 Identities=28% Similarity=0.434 Sum_probs=163.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------------
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------- 181 (1128)
.++++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 57999999999999999999999999999999999999998875321
Q ss_pred -ecCcEEEEecCCCCCc-ccHHHHHhcCC----CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 182 -IRGTVAYVPQVSWIFN-ATVRDNILFGS----AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 182 -~~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
.+..|+|++|++.++. .|++|||.++. ... .+++.+.++..++...++ ....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-----------RFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHH
Confidence 1346999999998875 69999997421 111 123344455555544333 33458999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhH
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||++|||||+.+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999988654433458999999999999865 89999999999999999887
Q ss_pred Hh
Q 001189 331 LS 332 (1128)
Q Consensus 331 l~ 332 (1128)
+.
T Consensus 228 ~~ 229 (242)
T PRK11124 228 FT 229 (242)
T ss_pred hc
Confidence 64
No 463
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=4.9e-34 Score=370.78 Aligned_cols=93 Identities=14% Similarity=0.229 Sum_probs=84.2
Q ss_pred hcCCCCCChhHHHHHHHHHHhccCC--CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEE
Q 001189 875 SEAGENFSVGQRQLLSLSRALLRRS--KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL 951 (1128)
Q Consensus 875 ~e~g~~LSgGqrqrl~lArall~~p--~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl 951 (1128)
+....+|||||-||+-||+.|-.+= =+++|||||.||-+.-...+.+.|+++. .|.|||+|-||.++++.||+|+-|
T Consensus 1382 ~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~~i~~AD~iidi 1461 (1809)
T PRK00635 1382 GQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGSLAEHADHLIHL 1461 (1809)
T ss_pred cCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 4556789999999999999998762 4789999999999999999999999887 489999999999999999999999
Q ss_pred ------eCCEEEEecChhHHhh
Q 001189 952 ------DSGRVLEYDTPEELLS 967 (1128)
Q Consensus 952 ------~~G~i~~~g~~~~l~~ 967 (1128)
..|+|+.+|+|+++..
T Consensus 1462 GPgAG~~GG~iv~~G~~~~l~~ 1483 (1809)
T PRK00635 1462 GPGSGPQGGYLLSTSALKQSQP 1483 (1809)
T ss_pred CCCccCCCCEEEecCCHHHHhh
Confidence 4799999999999975
No 464
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.3e-36 Score=325.04 Aligned_cols=189 Identities=26% Similarity=0.468 Sum_probs=157.1
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 184 (1128)
++++|++++|+. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++.
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 357999999999999999999999999999999999999998875421 234
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.++|++|++.++ ..|++||+.++.. .+ .+++.+.++..++.+.++..+ .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 699999999987 5799999987521 11 234556666667665444333 5899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCe
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 321 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 321 (1128)
||||+.+|+++||||||++||+.+.+++.+.+.....+|+|+|++||+++++.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999988665443458999999999999875 89999999884
No 465
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-36 Score=336.56 Aligned_cols=207 Identities=23% Similarity=0.382 Sum_probs=164.7
Q ss_pred CcEEEEeEEEEeCCCC--CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------
Q 001189 118 PAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~--~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------- 181 (1128)
..++++|++++|+.+. ..++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3589999999997432 136999999999999999999999999999999999999998875321
Q ss_pred ---ecCcEEEEecCCC--CCcccHHHHHhcCCC---CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChH
Q 001189 182 ---IRGTVAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 249 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGG 249 (1128)
++..|+|++|+|. ++..|++||+.++.. ...+ ++.+.++..++.. + .......+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~---~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-------D---YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-------h---HhcCChhhCCHH
Confidence 1346999999984 567899999987532 2221 2223333333311 1 123445789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecC
Q 001189 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGT 327 (1128)
Q Consensus 250 QkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~ 327 (1128)
||||++|||||+.+|++|||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999886544333 4899999999999875 589999999999999999
Q ss_pred hhHHhhc
Q 001189 328 FEDLSNN 334 (1128)
Q Consensus 328 ~~~l~~~ 334 (1128)
++++...
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 8887654
No 466
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.8e-36 Score=335.92 Aligned_cols=202 Identities=29% Similarity=0.503 Sum_probs=172.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 187 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 187 (1128)
.+.++|+++.|+. .+.+|+||||++++|+++|++||||||||||+++|+|++.|++|.+.. .+.+||
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4788999999972 357999999999999999999999999999999999999999876432 234699
Q ss_pred EEecCCCCC-cccHHHHHhcC-----CC--CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 188 YVPQVSWIF-NATVRDNILFG-----SA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 188 ~v~Q~~~l~-~~Tv~eni~~g-----~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
|+||+|.++ ..|++||+.|. .+ .+.+++.++++..+|.+.. ..+..+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 999999876 68999999863 21 2345677788888776522 22346899999999999999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCC-cEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG-KTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|+.+|++|||||||++|||.+++.+++.+.....+| +||+++||.++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999998766655556 799999999999887 89999999999999999888653
No 467
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=331.76 Aligned_cols=205 Identities=26% Similarity=0.380 Sum_probs=167.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|++++|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..
T Consensus 6 ~~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 368999999999742 246999999999999999999999999999999999999998875321 2345
Q ss_pred EEEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
++|++|+|. ++..|+++|+.++.. ... ++..++++..++.+..+ ....+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAI 153 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHH
Confidence 999999985 456799999987632 122 23344455555543332 3346899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999886554333 38999999999999888999999999999999999887654
No 468
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=330.54 Aligned_cols=206 Identities=27% Similarity=0.378 Sum_probs=167.9
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~~----------- 181 (1128)
..++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|.+..
T Consensus 12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 46999999999963 479999999999999999999999999999999999986 35664211
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
.+..|+|++|++.++..|++||+.++.. .+. ++..++++..++...+. ........+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 2346999999999988999999987521 222 33445556665533221 12345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+. .||++++|++|++++.|+.+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998865543 35789999999999886 58999999999999999988
Q ss_pred HHhhc
Q 001189 330 DLSNN 334 (1128)
Q Consensus 330 ~l~~~ 334 (1128)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 87643
No 469
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=5.8e-36 Score=325.37 Aligned_cols=201 Identities=23% Similarity=0.352 Sum_probs=159.6
Q ss_pred EEEEEEEEEeCC----C-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC--CE--ecCCCCh
Q 001189 744 IKFEDVVLRYRP----E-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID--GF--DIAKFGL 814 (1128)
Q Consensus 744 i~~~~v~~~y~~----~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~--g~--~i~~~~~ 814 (1128)
|+++|++++|+. + .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1 1369999999999999999999999999999999999999999999998 42 6665555
Q ss_pred HH---h-hhceEEEcCCCccccc-cHhhccccC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhH
Q 001189 815 MD---L-RKILGIIPQSPVLFSG-TVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQ 885 (1128)
Q Consensus 815 ~~---~-r~~i~~v~Q~~~lf~~-Tv~~nl~~~---~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~-v~e~g~~LSgGq 885 (1128)
.. + ++.++|+||++.++.. |+++|+.+. ......+..+ .+.++++.+ |++.. ......+|||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARL--NIPERLWHLPPATFSGGE 154 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhhCCcccCCHHH
Confidence 43 2 4579999999988865 999998631 1111111111 122333332 33322 234567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEE
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 951 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl 951 (1128)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||||+.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999865 47899999999999876 9999876
No 470
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-35 Score=325.22 Aligned_cols=202 Identities=26% Similarity=0.389 Sum_probs=163.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|+++.|+. +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 5899999999963 57999999999999999999999999999999999999998875321 2345
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCC-CCHHHH----HHHHHHh-CcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 186 VAYVPQVSWIFN-ATVRDNILFGSA-FEPARY----EKAIDVT-SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 186 i~~v~Q~~~l~~-~Tv~eni~~g~~-~~~~~~----~~~~~~~-~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
++|++|++.+|. .||+||+.++.. .+..+. .++++.. ++.+ .......+||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHH
Confidence 999999998886 699999987532 121222 2222222 1111 122345689999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||+.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++++. .||++++|++|++++.|+++++...
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999998866544446899999999998765 5899999999999999999888643
No 471
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.9e-36 Score=324.46 Aligned_cols=190 Identities=26% Similarity=0.420 Sum_probs=156.9
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------ecC
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 184 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 184 (1128)
++++|+++.|+.. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999632 57999999999999999999999999999999999999998875321 134
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.++|++|++.++. .|++||+.++.. .+ .+++.++++.+++.+..+.. ..+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHH
Confidence 5999999998885 699999987521 11 13445566666766544433 35899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeE
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 322 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 322 (1128)
||||+.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999988665443458999999999999875 899999999874
No 472
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=329.56 Aligned_cols=208 Identities=22% Similarity=0.285 Sum_probs=169.1
Q ss_pred cEEEEEEEEEeCCC------------------CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Q 001189 743 SIKFEDVVLRYRPE------------------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 804 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~------------------~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i 804 (1128)
.|+++||++.|+.. .+++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47888888877531 235899999999999999999999999999999999999999999999
Q ss_pred CCEecCCCChHHhhhceEEEcCCCcccc-ccHhhccccC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 805 DGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 805 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~~nl~~~---~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
+|. +++++|++.++. .|+++|+... ...+.++..+.. .+.++. .+++..+.....+
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~--~~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMT-----PKIIEF--SELGEFIYQPVKK 143 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHH--cCCchhhcCCccc
Confidence 984 456788876664 4999998632 122333332211 112221 2444555556678
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
||||||||++||||++++|+||||||||++||+.+.+.+.+.|.+.. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998764 47899999999999877 99999999999999
Q ss_pred ecChhHHhhcCC
Q 001189 959 YDTPEELLSNEG 970 (1128)
Q Consensus 959 ~g~~~~l~~~~~ 970 (1128)
.|++++++++..
T Consensus 224 ~g~~~~~~~~~~ 235 (264)
T PRK13546 224 YGELDDVLPKYE 235 (264)
T ss_pred eCCHHHHHHHhH
Confidence 999999987543
No 473
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=7.5e-36 Score=331.23 Aligned_cols=204 Identities=27% Similarity=0.434 Sum_probs=166.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
+.++++|+++.|++ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 35899999999963 57999999999999999999999999999999999999998874311
Q ss_pred ---------ecCcEEEEecCCCCCc-ccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCC
Q 001189 182 ---------IRGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 243 (1128)
Q Consensus 182 ---------~~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g 243 (1128)
.+..++|+||++.++. .||+||+.++. ..+. ++..+.++..++...+ .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 1346999999999885 69999997642 1121 2334445554543322 12345
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeE
Q 001189 244 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 322 (1128)
Q Consensus 244 ~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 322 (1128)
..||||||||++|||||+++|+++||||||++||+.+.+++++.+......|+|+|+|||+++++.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999998655443458999999999999885 899999999999
Q ss_pred eeecChhHHhhc
Q 001189 323 KEEGTFEDLSNN 334 (1128)
Q Consensus 323 ~~~g~~~~l~~~ 334 (1128)
++.|+++++...
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999998887543
No 474
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-36 Score=330.16 Aligned_cols=201 Identities=26% Similarity=0.435 Sum_probs=166.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 4789999999963 57999999999999999999999999999999999999998875421 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC-----C------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 187 AYVPQVSWIFN-ATVRDNILFGSA-----F------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 187 ~~v~Q~~~l~~-~Tv~eni~~g~~-----~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
+|++|++.++. .|+.||+.++.. + +.+++.++++..++.+..+. ....||||||||+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 147 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRA 147 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHH
Confidence 99999998875 499999987621 1 12344555666666544432 3468999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
+|||||+.+|++|||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||++++|++|+++..|+.+++..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999998866543345899999999999876 589999999999999999888754
No 475
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-36 Score=332.89 Aligned_cols=201 Identities=23% Similarity=0.374 Sum_probs=165.1
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecCc
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 185 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~ 185 (1128)
++++|++++|+. +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999962 57999999999999999999999999999999999999999875321 1246
Q ss_pred EEEEecCCC--CCcccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVSW--IFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~~--l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
|+|++|++. ++..|+.+|+.++. ..+. +++.++++..++.+..+ ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 999999985 46779999998641 1222 22344555556544332 2346899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998866554445899999999999985 4899999999999999998887654
No 476
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.7e-36 Score=365.70 Aligned_cols=212 Identities=26% Similarity=0.443 Sum_probs=172.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEEC----------------
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILID---------------- 805 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~G~I~i~---------------- 805 (1128)
|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999964 36999999999999999999999999999999999996 7999999997
Q ss_pred -------CEecC-------CCC---hHHhhhceEEEcCC-Cccccc-cHhhccccCC---CCCH----HHHHHHHHHhcH
Q 001189 806 -------GFDIA-------KFG---LMDLRKILGIIPQS-PVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHL 859 (1128)
Q Consensus 806 -------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l 859 (1128)
|.++. ..+ ...+|+.++|+||+ +.+|.. |+++|+.+.. .... +++.++++.++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g- 157 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ- 157 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-
Confidence 33221 111 12457789999998 567764 9999986411 1111 22334444444
Q ss_pred HHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeec
Q 001189 860 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAH 937 (1128)
Q Consensus 860 ~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH 937 (1128)
++........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||
T Consensus 158 ----------l~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 158 ----------LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred ----------ChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 4333444457899999999999999999999999999999999999999999999864 3789999999
Q ss_pred Cchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 938 RLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 938 ~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 9999987 999999999999999999988653
No 477
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=326.04 Aligned_cols=201 Identities=21% Similarity=0.373 Sum_probs=163.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 4889999999963 57999999999999999999999999999999999999999875321 1346
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVSWIFN-ATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~~l~~-~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
++|++|++.++. .|++||+.+... .+. .++.+.++..++.. ........||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-----------LRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-----------HhhcchhhCCHHHHHHHHH
Confidence 999999998875 699999987531 121 12333333333332 2334557899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
||||+.+|++|||||||++||+.+.+++.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999988755443345899999999998775 589999999999999999988764
No 478
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=331.22 Aligned_cols=202 Identities=27% Similarity=0.405 Sum_probs=168.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++..
T Consensus 10 ~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 46999999999963 47999999999999999999999999999999999999998875421 1335
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCC--------C---CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSA--------F---EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~--------~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
++|++|++.++ ..|+.||+.++.. . ..++...+++.+++.+.++..+ .+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHH
Confidence 99999998765 5699999987521 1 1234556677777765554433 4799999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
++|||||+.+|+++||||||++||+.+.+.+.+.+..... .|.|+|++||+++++. .||+|++|++|++++.|+.+++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999999999999999876544333 3899999999999985 5899999999999999998887
Q ss_pred hh
Q 001189 332 SN 333 (1128)
Q Consensus 332 ~~ 333 (1128)
..
T Consensus 236 ~~ 237 (265)
T PRK10575 236 MR 237 (265)
T ss_pred cC
Confidence 64
No 479
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.5e-36 Score=329.92 Aligned_cols=201 Identities=26% Similarity=0.393 Sum_probs=165.5
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------------
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------------ 181 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------------ 181 (1128)
|+++|+++.|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 57999999999999999999999999999999999999998874321
Q ss_pred -------ecCcEEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCC
Q 001189 182 -------IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 245 (1128)
Q Consensus 182 -------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~ 245 (1128)
.+..++|++|++.++ ..|+.||+.++. .... +++.++++..++.+.++ ....+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-----------HMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-----------cChhh
Confidence 134699999999887 589999998742 1111 23445555555554433 33468
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEe
Q 001189 246 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVK 323 (1128)
Q Consensus 246 LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~ 323 (1128)
||||||||++|||||+.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+. .||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999886554433 3899999999999985 58999999999999
Q ss_pred eecChhHHhhc
Q 001189 324 EEGTFEDLSNN 334 (1128)
Q Consensus 324 ~~g~~~~l~~~ 334 (1128)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99998887644
No 480
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=331.26 Aligned_cols=206 Identities=18% Similarity=0.297 Sum_probs=165.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-----~~~g~~~~----------- 181 (1128)
+.++++|++++|+. +++|+++||++++|++++|+|+||||||||+++|+|+.+ |++|.+..
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 46999999999963 579999999999999999999999999999999999864 56664321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCCC----C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGSAF----E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~----~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
.+..++|++|++.+|..|++||+.++... . .++..++++..++...+. ........+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHH
Confidence 23469999999999988999999865211 1 122333444444432111 12345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++. .||+|++|++|++++.|+++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998755443 34689999999999876 58999999999999999988
Q ss_pred HHhhc
Q 001189 330 DLSNN 334 (1128)
Q Consensus 330 ~l~~~ 334 (1128)
++..+
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 87644
No 481
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=332.75 Aligned_cols=202 Identities=25% Similarity=0.436 Sum_probs=166.9
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecCc
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 185 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~ 185 (1128)
++++|++++|+. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. ++..
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 346999999999999999999999999999999999999998874321 2345
Q ss_pred EEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 186 VAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 186 i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
|+|++|++ .++..||+|||.++.. ... ++..++++.+++....+. ...+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-----------PPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-----------ChhhCCHHHHHHHHH
Confidence 99999997 4678899999987521 121 334455666666433322 245899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++++. .||+|++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999866544345899999999999986 5999999999999999999887654
No 482
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.5e-36 Score=321.05 Aligned_cols=191 Identities=21% Similarity=0.380 Sum_probs=158.0
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 188 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 188 (1128)
++++|++|.|+. +++|+|+||++++| +++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 478999999963 47999999999999 99999999999999999999999999875432 1346999
Q ss_pred EecCCCCCc-ccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
++|++.+|. .||+||+.+.. ..+ .++..++++..++.+..+. ...+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 999999885 59999997631 111 2345566677777654432 2357999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeec
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 326 (1128)
+.+|+++||||||++||+.+.+++++.+.... +++|+|++||+++++. .||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999988654433 4689999999999986 58999999999998754
No 483
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.6e-35 Score=325.92 Aligned_cols=200 Identities=21% Similarity=0.357 Sum_probs=163.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4789999999963 47999999999999999999999999999999999999999875321 1235
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCCC---------------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChH
Q 001189 186 VAYVPQVSWIFN-ATVRDNILFGSAF---------------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 249 (1128)
Q Consensus 186 i~~v~Q~~~l~~-~Tv~eni~~g~~~---------------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGG 249 (1128)
++|++|++.++. .||+||+.++... ..+++.+.++..++.+ .......+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 999999999886 5999999875321 0122333333333332 233455789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecCh
Q 001189 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 328 (1128)
Q Consensus 250 QkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 328 (1128)
||||++|||||+.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++++.. ||+|++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 999999999999999999999999999999999998865443 347899999999999875 899999999999999998
Q ss_pred hHHhh
Q 001189 329 EDLSN 333 (1128)
Q Consensus 329 ~~l~~ 333 (1128)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 88764
No 484
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=343.80 Aligned_cols=208 Identities=27% Similarity=0.423 Sum_probs=177.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh-ce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK-IL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~-~i 821 (1128)
-++++|++++|++- +||+||||++.+||++|++|.||||||||+|.|.|.|+|++|+|.+||.++.-.++.+.++ .|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48999999999754 7999999999999999999999999999999999999999999999999999888877665 59
Q ss_pred EEEcCCCccccc-cHhhccccCCCCC-------HHHHHHHHHHhcHHHHHHHccC--CcchhhhcCCCCCChhHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFSEHS-------DADLWEALERAHLKDAIRRNSL--GLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~~~~-------~~~i~~~l~~~~l~~~i~~lp~--Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
++|.|+..|+.. ||.|||-...+.. ...+.+ ...+.+.++.. .+++.+ .+||.||||.+.|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~-----~A~~~l~~lg~~~~~~~~v----~~LsiaqrQ~VeI 156 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR-----RARELLARLGLDIDPDTLV----GDLSIAQRQMVEI 156 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHH-----HHHHHHHHcCCCCChhhhh----hhCCHHHHHHHHH
Confidence 999999999965 9999996543321 122221 12233443322 244554 4699999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecC
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
|||+..+++|||||||||+|+....+.+.+.++++. +|.++|+|||||+++.. ||||.||.||+++..+.
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999999999999999876 58999999999999988 99999999999998766
No 485
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=328.69 Aligned_cols=202 Identities=21% Similarity=0.370 Sum_probs=164.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|+++.|+. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999962 57999999999999999999999999999999999999999875321 1234
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCC-----------C-----C---H---HHHHHHHHHhCcHHHHhcCCCCCcccccCC
Q 001189 186 VAYVPQVSWIFN-ATVRDNILFGSA-----------F-----E---P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGER 242 (1128)
Q Consensus 186 i~~v~Q~~~l~~-~Tv~eni~~g~~-----------~-----~---~---~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~ 242 (1128)
++|++|++.++. .|++||+.++.. + . . +++.+.++..++. ......
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-----------EHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-----------hhhhCC
Confidence 899999999885 599999997521 0 0 0 1122223333332 233455
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhc-CCEEEEEeCC
Q 001189 243 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEG 320 (1128)
Q Consensus 243 g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 320 (1128)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+.. ||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6789999999999999999999999999999999999999998866544333 7899999999999865 8999999999
Q ss_pred eEeeecChhHHhhc
Q 001189 321 MVKEEGTFEDLSNN 334 (1128)
Q Consensus 321 ~i~~~g~~~~l~~~ 334 (1128)
++++.|+.+++...
T Consensus 231 ~i~~~~~~~~~~~~ 244 (255)
T PRK11300 231 TPLANGTPEEIRNN 244 (255)
T ss_pred eEEecCCHHHHhhC
Confidence 99999998887543
No 486
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.3e-36 Score=322.68 Aligned_cols=188 Identities=34% Similarity=0.543 Sum_probs=153.7
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEE
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 189 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 189 (1128)
++|++++|+.. .+++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..|+|+
T Consensus 2 ~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 68999999632 257999999999999999999999999999999999999999875421 13469999
Q ss_pred ecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 190 PQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 190 ~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
+|++. +++.|++||+.++.. .+. ++..+.++..++.+.++. ....||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 99984 568899999987521 221 234445566666544433 3468999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCe
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 321 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 321 (1128)
+.+|+++||||||++||+.+.+++++.+.....+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998665444458999999999999876 89999999884
No 487
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.2e-35 Score=311.03 Aligned_cols=167 Identities=28% Similarity=0.582 Sum_probs=148.3
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCcEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 188 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 188 (1128)
++++|++++|+.. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.... .+..++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999742 247999999999999999999999999999999999999998875421 2346999
Q ss_pred EecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 189 VPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 189 v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
++|++++++.|++||+ ..+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999989999998 35799999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeec
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 326 (1128)
|||||++||+.+.+.+++.+... .+++|+|++||++++++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999998866543 3589999999999999889999999999998654
No 488
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-35 Score=319.94 Aligned_cols=191 Identities=26% Similarity=0.458 Sum_probs=158.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
|+++|++++|+. +. .|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 468999999963 22 3999999999999999999999999999999999999875432 12359999
Q ss_pred ecCCCCCc-ccHHHHHhcCCC--C-----CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 190 PQVSWIFN-ATVRDNILFGSA--F-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 190 ~Q~~~l~~-~Tv~eni~~g~~--~-----~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+|++.++. .|++||+.++.. . ++++..++++..++.+..+..+ .+||||||||++|||||+
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 99999885 599999987532 1 1335566777777766555444 479999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeec
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 326 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 326 (1128)
.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++++.. ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999886654333 48999999999999865 8999999999988653
No 489
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=328.01 Aligned_cols=205 Identities=27% Similarity=0.378 Sum_probs=166.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCCce-------------
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASA------------- 180 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-----~g~~~------------- 180 (1128)
.++++|++|+|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|.+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 57999999999999999999999999999999999999987 35321
Q ss_pred -eecCcEEEEecCCCCCcccHHHHHhcCCCC----CH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 181 -VIRGTVAYVPQVSWIFNATVRDNILFGSAF----EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 181 -~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
.++..++|++|++.+++.|++||+.++... .. +++.++++..++.+.+. ......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 124569999999999888999999876321 11 22333344444433221 224556789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhH
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||++|||||+.+|+++||||||++||+.+.+++.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999998755433 457999999999999876 79999999999999999888
Q ss_pred Hhhc
Q 001189 331 LSNN 334 (1128)
Q Consensus 331 l~~~ 334 (1128)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 7544
No 490
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=329.86 Aligned_cols=206 Identities=26% Similarity=0.388 Sum_probs=165.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC--C---CCCCce------------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP--P---VSDASA------------ 180 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~--~---~~g~~~------------ 180 (1128)
+.++++|+++.|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|.+.
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 46999999999963 479999999999999999999999999999999999987 3 355421
Q ss_pred --eecCcEEEEecCCCCCcccHHHHHhcCCC----CCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 181 --VIRGTVAYVPQVSWIFNATVRDNILFGSA----FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 181 --~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
..+..++|++|++.++..|++||+.++.. .+++ +..++++..++.+.+. +.......+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 12346999999999988899999987531 1211 2333444445433221 12345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|+++||||||++||+.+...+.+.+.. ..+++|+|+|||+++.+. .||++++|++|++++.|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999875544 334789999999999876 58999999999999999998
Q ss_pred HHhhc
Q 001189 330 DLSNN 334 (1128)
Q Consensus 330 ~l~~~ 334 (1128)
++..+
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 87644
No 491
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9.2e-36 Score=325.17 Aligned_cols=199 Identities=28% Similarity=0.488 Sum_probs=161.4
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCcE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 186 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 186 (1128)
++++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 47999999999999999999999999999999999999999875421 13359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC-C--C-HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 187 AYVPQVSWIFN-ATVRDNILFGSA-F--E-PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 187 ~~v~Q~~~l~~-~Tv~eni~~g~~-~--~-~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+|++|++.+|. .|++||+.++.. . . .+...++++..+. + .........+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l-------~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---L-------KEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---H-------HHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999886 599999987532 1 1 1222333333321 1 11223455689999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHH
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 331 (1128)
.+|+++||||||++||+.+.+++++.+..... .++|+|++||+++++.. ||+|+++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999886654433 37999999999999885 899999999999999998876
No 492
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-36 Score=345.86 Aligned_cols=205 Identities=26% Similarity=0.407 Sum_probs=168.4
Q ss_pred cEEEEeEEEEeCCCCC---------------------CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 119 AISIRNGYFSWDSKAE---------------------RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~---------------------~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
.|+++|+++.|..... .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 4777777777764221 2379999999999999999999999999999999999999987
Q ss_pred Ccee----------------ecCcEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHhCcHHHHhcCCC
Q 001189 178 ASAV----------------IRGTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPG 233 (1128)
Q Consensus 178 ~~~~----------------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~ 233 (1128)
.+.. .+..++|++|++.+| +.||+|||.++.. .+ .++..++++.+++.+..+..|
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-
Confidence 5421 124699999999988 4799999987531 22 234556677777765554444
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cC
Q 001189 234 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QV 311 (1128)
Q Consensus 234 g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~ 311 (1128)
.+||||||||++|||||+.+|++|||||||++||+.+.+.+++.+..... .|+|+|+|||+++++. .|
T Consensus 163 ----------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~ 232 (400)
T PRK10070 163 ----------DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG 232 (400)
T ss_pred ----------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhC
Confidence 58999999999999999999999999999999999999999887655433 4899999999999875 58
Q ss_pred CEEEEEeCCeEeeecChhHHhhc
Q 001189 312 DRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 312 d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|+|++|++|++++.|+++++...
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999998765
No 493
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.3e-35 Score=338.65 Aligned_cols=207 Identities=22% Similarity=0.334 Sum_probs=167.9
Q ss_pred CcEEEEeEEEEeCCCC----------CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------
Q 001189 118 PAISIRNGYFSWDSKA----------ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------ 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~----------~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------ 181 (1128)
+.++++|++++|+... ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4689999999996321 246999999999999999999999999999999999999998875321
Q ss_pred ---------ecCcEEEEecCC--CCC-cccHHHHHhcCC-----CCCH----HHHHHHHHHhCcHHHHhcCCCCCccccc
Q 001189 182 ---------IRGTVAYVPQVS--WIF-NATVRDNILFGS-----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIG 240 (1128)
Q Consensus 182 ---------~~~~i~~v~Q~~--~l~-~~Tv~eni~~g~-----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg 240 (1128)
+++.|+||+|+| .++ ..||.|||.++. ..+. ++..+.++..++.+. ...
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LIN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hhc
Confidence 245799999998 365 689999996531 1232 233445555565321 122
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEe
Q 001189 241 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVH 318 (1128)
Q Consensus 241 ~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~ 318 (1128)
....+|||||||||+|||||+.+|+++|+||||++||+.+...+.+.+..... .|.|+|+|||++..+.. ||+|++|.
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 33468999999999999999999999999999999999999999986654433 38999999999999875 89999999
Q ss_pred CCeEeeecChhHHhhc
Q 001189 319 EGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 319 ~G~i~~~g~~~~l~~~ 334 (1128)
+|+|++.|+.+++..+
T Consensus 237 ~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 237 LGHAVELGTYDEVYHN 252 (331)
T ss_pred CCEEEEEcCHHHHHcC
Confidence 9999999999998765
No 494
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=328.77 Aligned_cols=206 Identities=24% Similarity=0.350 Sum_probs=166.2
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC---CCC--CCCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE---LPP--VSDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~---~~~--~~g~~~~----------- 181 (1128)
+.++++|+++.|+. +++|+|+||++++|++++|+|+||||||||+++|+|+ ++| ++|.+..
T Consensus 2 ~~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14245 2 VKIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78 (250)
T ss_pred cEEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc
Confidence 36899999999963 5699999999999999999999999999999999996 454 3553211
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC----CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 250 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ 250 (1128)
.++.++|+||++.++..|++||+.++.. ... ++..++++.+++.+.+. +.....+.+|||||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14245 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQ 151 (250)
T ss_pred HHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHH
Confidence 1346999999999988899999986521 111 23444555555543221 12345567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 329 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 329 (1128)
|||++|||||+.+|+++||||||++||+.+.+++.+.+... .+++|+|+|||+++.+. .||++++|++|++++.|+++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999998865544 45799999999999885 58999999999999999999
Q ss_pred HHhhc
Q 001189 330 DLSNN 334 (1128)
Q Consensus 330 ~l~~~ 334 (1128)
++.++
T Consensus 231 ~~~~~ 235 (250)
T PRK14245 231 KIFTN 235 (250)
T ss_pred HHhcC
Confidence 88654
No 495
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-35 Score=327.21 Aligned_cols=201 Identities=29% Similarity=0.430 Sum_probs=166.6
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. ++..+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 4789999999963 57999999999999999999999999999999999999999875421 12459
Q ss_pred EEEecCCCC-CcccHHHHHhcCCC-C------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 187 AYVPQVSWI-FNATVRDNILFGSA-F------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 187 ~~v~Q~~~l-~~~Tv~eni~~g~~-~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
+|++|++.+ +..||+||+.++.. . ..++..++++..++.+..+. ....||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHH
Confidence 999999987 57899999987532 1 12234555666666543332 34689999999999999
Q ss_pred HHc------cCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhH
Q 001189 259 AVY------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 259 al~------~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||+ .+|+++||||||++||+.+.+.+.+.+.... .+|+|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999988655443 45899999999999986 589999999999999999888
Q ss_pred Hhh
Q 001189 331 LSN 333 (1128)
Q Consensus 331 l~~ 333 (1128)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 764
No 496
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=330.17 Aligned_cols=205 Identities=24% Similarity=0.389 Sum_probs=167.2
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC-----CCCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-----~~g~~~~----------- 181 (1128)
+.|+++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|.+..
T Consensus 18 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 18 IKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred ceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 46999999999963 5799999999999999999999999999999999999975 6664321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC---C--C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGSA---F--E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 249 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~--~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGG 249 (1128)
++..++|++|++.++..||+||+.++.. . . .+++.++++..++.+.+. ......+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 2346999999999988899999987521 1 1 123455566666643321 1234456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecCh
Q 001189 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 328 (1128)
Q Consensus 250 QkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 328 (1128)
||||++|||||+.+|+++||||||++||+.+.+++.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-hcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999998865443 347899999999999864 899999999999999998
Q ss_pred hHHhh
Q 001189 329 EDLSN 333 (1128)
Q Consensus 329 ~~l~~ 333 (1128)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14235 247 EKMFT 251 (267)
T ss_pred HHHHh
Confidence 88754
No 497
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=328.46 Aligned_cols=206 Identities=24% Similarity=0.372 Sum_probs=166.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC-----CCCCcee-----------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV----------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-----~~g~~~~----------- 181 (1128)
+.++++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|.+..
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 46999999999962 5799999999999999999999999999999999999875 5664221
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCC---CCCHH----HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 182 ---IRGTVAYVPQVSWIFNATVRDNILFGS---AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 182 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~---~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
.+..++|++|++.++..|++||+.++. ..+.+ +..++++.+++...+. ........+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 234599999999998899999998752 12222 2344555555432211 123345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhH
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||++|||||+.+|+++||||||++||+.+.+++++.+... .+++|+|++||+++++. .||+|++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999998765443 35799999999999885 489999999999999999988
Q ss_pred Hhhc
Q 001189 331 LSNN 334 (1128)
Q Consensus 331 l~~~ 334 (1128)
+..+
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 7543
No 498
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.6e-35 Score=322.02 Aligned_cols=199 Identities=25% Similarity=0.369 Sum_probs=161.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 6 ~~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 3599999999996 257999999999999999999999999999999999999999875421 1346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-----CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSA-----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~-----~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
++|++|++.+++.|++||+.++.. .+.++..+.++..++.+ +.......+||||||||++|||||
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHH
Confidence 999999999998899999986421 12233444555555432 122345578999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEe-CCeEeeecChh
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVH-EGMVKEEGTFE 329 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~-~G~i~~~g~~~ 329 (1128)
+.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999876544333 4889999999999998899999995 56666777764
No 499
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=7.9e-36 Score=323.79 Aligned_cols=186 Identities=27% Similarity=0.463 Sum_probs=155.9
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCcc---ccccHhhccccC
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL---FSGTVRFNLDPF 842 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l---f~~Tv~~nl~~~ 842 (1128)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..|++++|+||++.+ +..|+++|+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 356789999999976 346999998532
Q ss_pred C--------CC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCC
Q 001189 843 S--------EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 911 (1128)
Q Consensus 843 ~--------~~---~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~l 911 (1128)
. .. .++++.++++..++.+. ......+||||||||++|||||+++|++|||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTEL-----------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchh-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 1 01 12234555555554433 33344579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 912 DVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 912 D~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|+.+.+.+.+.|++.. +++|+|++||+++++.. ||+|+++ +|++++.|+++++..+
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999999865 47899999999999877 9999999 8999999999998653
No 500
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-35 Score=319.82 Aligned_cols=200 Identities=25% Similarity=0.426 Sum_probs=167.0
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
++++|++++|+. .+ .++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 689999999963 22 3999999999999999999999999999999999999875422 12359999
Q ss_pred ecCCCCCc-ccHHHHHhcCCC----CC---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 190 PQVSWIFN-ATVRDNILFGSA----FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 190 ~Q~~~l~~-~Tv~eni~~g~~----~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+|++.++. .|++||+.++.. .. .+++.++++..++.+.++..+ ..||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 99998886 599999987521 11 234566777778776665554 479999999999999999
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhcc
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 99999999999999999999999886554333 38899999999999865 8999999999999999998887553
Done!