Query 001189
Match_columns 1128
No_of_seqs 754 out of 4770
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 15:35:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1E-141 3E-146 1408.5 95.0 929 42-980 335-1316(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 1E-120 3E-125 1204.7 82.8 921 42-980 307-1270(1284)
3 4f4c_A Multidrug resistance pr 100.0 4.9E-73 1.7E-77 751.5 64.7 513 460-981 137-654 (1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 7.4E-72 2.5E-76 686.1 61.9 546 424-979 26-577 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 1.1E-71 3.9E-76 686.5 59.2 545 423-979 39-589 (598)
6 3b5x_A Lipid A export ATP-bind 100.0 9.2E-70 3.2E-74 668.4 71.9 542 426-979 30-578 (582)
7 3b60_A Lipid A export ATP-bind 100.0 7E-70 2.4E-74 669.4 70.3 545 424-979 28-578 (582)
8 4a82_A Cystic fibrosis transme 100.0 2.6E-70 8.8E-75 672.3 60.4 504 465-978 67-574 (578)
9 2yl4_A ATP-binding cassette SU 100.0 2E-69 6.9E-74 667.0 68.2 545 426-979 24-582 (595)
10 3g5u_A MCG1178, multidrug resi 100.0 4.2E-69 1.4E-73 712.2 52.0 510 460-979 109-624 (1284)
11 2iw3_A Elongation factor 3A; a 100.0 7E-63 2.4E-67 620.7 45.1 195 118-332 434-634 (986)
12 3bk7_A ABC transporter ATP-bin 100.0 4.1E-64 1.4E-68 614.7 30.4 198 743-967 357-563 (607)
13 1yqt_A RNAse L inhibitor; ATP- 100.0 4.4E-64 1.5E-68 608.9 26.9 198 743-967 287-493 (538)
14 3ozx_A RNAse L inhibitor; ATP 100.0 4.3E-61 1.5E-65 580.9 25.5 198 743-966 269-476 (538)
15 3ux8_A Excinuclease ABC, A sub 100.0 6.3E-61 2.1E-65 599.6 27.7 195 134-332 30-297 (670)
16 3j16_B RLI1P; ribosome recycli 100.0 5.8E-60 2E-64 576.7 30.4 197 747-968 350-560 (608)
17 3nh6_A ATP-binding cassette SU 100.0 6.3E-57 2.2E-61 506.2 25.0 270 706-980 19-289 (306)
18 4a82_A Cystic fibrosis transme 100.0 6.6E-53 2.3E-57 517.8 37.5 300 42-343 260-574 (578)
19 3qf4_A ABC transporter, ATP-bi 100.0 1.4E-52 4.8E-57 515.0 40.2 302 41-344 261-577 (587)
20 3b5x_A Lipid A export ATP-bind 100.0 6.6E-52 2.3E-56 509.6 41.0 300 43-344 265-578 (582)
21 3b60_A Lipid A export ATP-bind 100.0 7.9E-52 2.7E-56 509.0 38.0 300 43-344 265-578 (582)
22 3qf4_B Uncharacterized ABC tra 100.0 1.4E-52 4.9E-57 516.5 29.7 301 42-345 276-590 (598)
23 2yl4_A ATP-binding cassette SU 100.0 4.5E-51 1.5E-55 503.6 37.7 301 42-343 261-581 (595)
24 2ff7_A Alpha-hemolysin translo 100.0 2.1E-50 7.2E-55 442.3 30.0 237 742-978 6-243 (247)
25 3nh6_A ATP-binding cassette SU 100.0 3.5E-51 1.2E-55 459.6 23.8 260 83-345 15-289 (306)
26 3gd7_A Fusion complex of cysti 100.0 1.8E-49 6E-54 459.3 26.1 240 735-975 11-250 (390)
27 2ghi_A Transport protein; mult 100.0 1.8E-48 6.2E-53 430.2 28.1 234 742-977 16-251 (260)
28 2ixe_A Antigen peptide transpo 100.0 1.8E-48 6.2E-53 432.6 27.7 236 742-978 15-255 (271)
29 1mv5_A LMRA, multidrug resista 100.0 2.8E-49 9.7E-54 432.9 18.6 224 744-968 2-227 (243)
30 2vf7_A UVRA2, excinuclease ABC 100.0 9.2E-48 3.2E-52 480.4 33.4 212 742-970 501-830 (842)
31 2pze_A Cystic fibrosis transme 100.0 2.9E-46 1E-50 405.2 24.1 214 742-968 5-219 (229)
32 3tui_C Methionine import ATP-b 100.0 1.8E-46 6.3E-51 427.8 22.0 223 742-975 23-261 (366)
33 2cbz_A Multidrug resistance-as 100.0 4.1E-46 1.4E-50 406.0 23.6 220 744-977 4-226 (237)
34 3pih_A Uvrabc system protein A 100.0 1.1E-45 3.7E-50 465.4 30.2 210 743-970 589-905 (916)
35 3gfo_A Cobalt import ATP-bindi 100.0 3.9E-46 1.3E-50 413.5 20.1 214 743-968 7-234 (275)
36 2pze_A Cystic fibrosis transme 100.0 5.6E-45 1.9E-49 395.1 26.7 218 119-338 6-223 (229)
37 1ji0_A ABC transporter; ATP bi 100.0 5E-45 1.7E-49 398.4 24.1 217 743-967 6-228 (240)
38 2cbz_A Multidrug resistance-as 100.0 1.2E-44 4E-49 394.5 26.3 223 119-343 3-227 (237)
39 2r6f_A Excinuclease ABC subuni 100.0 1.4E-44 4.8E-49 450.6 30.2 211 743-970 629-945 (972)
40 2olj_A Amino acid ABC transpor 100.0 6.1E-45 2.1E-49 401.6 23.5 215 743-970 24-251 (263)
41 3tif_A Uncharacterized ABC tra 100.0 4.2E-45 1.4E-49 397.5 21.9 212 744-966 2-233 (235)
42 2ff7_A Alpha-hemolysin translo 100.0 1.9E-44 6.6E-49 395.0 27.0 223 119-343 7-243 (247)
43 3fvq_A Fe(3+) IONS import ATP- 100.0 6.3E-45 2.2E-49 415.2 23.3 219 743-974 4-235 (359)
44 4g1u_C Hemin import ATP-bindin 100.0 4.8E-45 1.6E-49 403.7 21.1 212 743-967 11-237 (266)
45 2ygr_A Uvrabc system protein A 100.0 4.1E-44 1.4E-48 448.2 32.1 211 743-970 647-963 (993)
46 3rlf_A Maltose/maltodextrin im 100.0 8.8E-45 3E-49 416.7 21.8 217 743-974 3-230 (381)
47 1b0u_A Histidine permease; ABC 100.0 2E-44 6.7E-49 398.4 23.5 215 743-969 6-244 (262)
48 2ghi_A Transport protein; mult 100.0 6.1E-44 2.1E-48 394.1 27.0 223 119-343 17-252 (260)
49 1vpl_A ABC transporter, ATP-bi 100.0 2.1E-44 7.3E-49 396.0 23.1 213 742-968 14-236 (256)
50 1mv5_A LMRA, multidrug resista 100.0 1.8E-44 6E-49 395.0 20.3 220 120-342 2-235 (243)
51 2yyz_A Sugar ABC transporter, 100.0 3.9E-44 1.3E-48 410.2 23.9 215 744-973 4-229 (359)
52 1g6h_A High-affinity branched- 100.0 3.9E-44 1.3E-48 395.3 22.8 214 743-965 7-240 (257)
53 2yz2_A Putative ABC transporte 100.0 6.7E-44 2.3E-48 395.2 23.4 212 744-969 3-229 (266)
54 1z47_A CYSA, putative ABC-tran 100.0 3.5E-44 1.2E-48 409.5 21.6 217 742-973 13-241 (355)
55 2pcj_A ABC transporter, lipopr 100.0 2.1E-44 7.1E-49 389.3 17.7 206 743-961 4-222 (224)
56 2it1_A 362AA long hypothetical 100.0 4.6E-44 1.6E-48 410.0 21.5 215 744-973 4-229 (362)
57 2ixe_A Antigen peptide transpo 100.0 1.6E-43 5.5E-48 392.8 25.0 226 118-343 15-255 (271)
58 1v43_A Sugar-binding transport 100.0 9.7E-44 3.3E-48 408.8 23.7 216 743-973 11-237 (372)
59 2onk_A Molybdate/tungstate ABC 100.0 6.7E-44 2.3E-48 388.6 20.5 208 744-969 2-218 (240)
60 3d31_A Sulfate/molybdate ABC t 100.0 1E-43 3.5E-48 405.5 22.2 214 744-973 2-223 (348)
61 1oxx_K GLCV, glucose, ABC tran 100.0 5.6E-44 1.9E-48 409.3 19.9 217 744-973 4-236 (353)
62 2ihy_A ABC transporter, ATP-bi 100.0 3.7E-44 1.2E-48 399.1 17.5 212 743-967 21-252 (279)
63 1g29_1 MALK, maltose transport 100.0 1.4E-43 4.8E-48 408.4 20.5 216 743-973 3-235 (372)
64 2qi9_C Vitamin B12 import ATP- 100.0 2.6E-43 9E-48 385.8 21.2 207 743-967 4-222 (249)
65 2bbs_A Cystic fibrosis transme 100.0 2.7E-43 9.2E-48 393.7 20.7 208 742-967 39-247 (290)
66 2d2e_A SUFC protein; ABC-ATPas 100.0 3.8E-43 1.3E-47 385.9 18.1 212 744-964 4-230 (250)
67 3gd7_A Fusion complex of cysti 100.0 1.4E-42 4.7E-47 401.7 23.5 215 118-335 18-244 (390)
68 2bbs_A Cystic fibrosis transme 100.0 3.6E-42 1.2E-46 384.6 24.0 232 95-334 17-248 (290)
69 2pjz_A Hypothetical protein ST 100.0 2.4E-42 8.1E-47 381.0 20.8 206 744-968 2-216 (263)
70 2zu0_C Probable ATP-dependent 100.0 2.1E-42 7.3E-47 383.2 19.9 215 743-966 20-253 (267)
71 2nq2_C Hypothetical ABC transp 100.0 3.9E-42 1.3E-46 377.9 18.1 199 743-967 4-217 (253)
72 3gfo_A Cobalt import ATP-bindi 100.0 1.3E-41 4.5E-46 377.2 21.0 207 119-338 7-238 (275)
73 3tif_A Uncharacterized ABC tra 100.0 1.2E-41 4E-46 370.3 16.2 202 120-331 2-232 (235)
74 3tui_C Methionine import ATP-b 100.0 2.7E-41 9.3E-46 385.2 18.7 208 117-335 22-255 (366)
75 3fvq_A Fe(3+) IONS import ATP- 100.0 1.4E-40 4.7E-45 379.5 21.9 203 119-335 4-230 (359)
76 1sgw_A Putative ABC transporte 100.0 4.9E-41 1.7E-45 359.1 15.2 194 742-956 9-210 (214)
77 2olj_A Amino acid ABC transpor 100.0 2.3E-40 8E-45 365.1 20.3 202 119-334 24-249 (263)
78 1ji0_A ABC transporter; ATP bi 100.0 4.1E-40 1.4E-44 359.6 21.1 202 119-334 6-229 (240)
79 2yz2_A Putative ABC transporte 100.0 6.7E-40 2.3E-44 363.2 23.1 205 119-334 2-228 (266)
80 3rlf_A Maltose/maltodextrin im 100.0 1.8E-40 6.2E-45 380.9 18.6 203 119-335 3-225 (381)
81 1b0u_A Histidine permease; ABC 100.0 3.6E-40 1.2E-44 364.4 20.3 202 119-334 6-243 (262)
82 2nq2_C Hypothetical ABC transp 100.0 3.9E-40 1.3E-44 362.0 20.4 201 119-334 4-218 (253)
83 1vpl_A ABC transporter, ATP-bi 100.0 5.2E-40 1.8E-44 361.2 20.9 203 117-333 13-235 (256)
84 2pcj_A ABC transporter, lipopr 100.0 1.7E-40 5.7E-45 358.8 16.3 195 119-327 4-222 (224)
85 1g6h_A High-affinity branched- 100.0 4.8E-40 1.6E-44 362.7 19.5 198 119-330 7-239 (257)
86 4g1u_C Hemin import ATP-bindin 100.0 5E-40 1.7E-44 363.5 19.4 203 118-334 10-238 (266)
87 1z47_A CYSA, putative ABC-tran 100.0 6.9E-40 2.4E-44 374.1 19.3 206 117-335 12-237 (355)
88 2yyz_A Sugar ABC transporter, 100.0 1.3E-39 4.5E-44 372.7 21.5 203 119-335 3-225 (359)
89 1oxx_K GLCV, glucose, ABC tran 100.0 1.9E-39 6.7E-44 371.7 20.1 203 119-335 3-232 (353)
90 1v43_A Sugar-binding transport 100.0 2.5E-39 8.4E-44 372.2 20.7 203 119-335 11-233 (372)
91 2it1_A 362AA long hypothetical 100.0 1.5E-39 5E-44 372.8 18.4 202 119-334 3-224 (362)
92 2onk_A Molybdate/tungstate ABC 100.0 2E-39 6.7E-44 353.4 17.9 198 120-334 2-217 (240)
93 3d31_A Sulfate/molybdate ABC t 100.0 2.4E-39 8.3E-44 369.5 19.3 201 120-335 2-219 (348)
94 2ihy_A ABC transporter, ATP-bi 100.0 2E-39 6.7E-44 361.0 17.0 203 118-334 20-253 (279)
95 1g29_1 MALK, maltose transport 100.0 4.7E-39 1.6E-43 370.7 19.2 202 119-334 3-230 (372)
96 2qi9_C Vitamin B12 import ATP- 100.0 7.6E-39 2.6E-43 350.4 19.5 196 119-333 4-222 (249)
97 2d2e_A SUFC protein; ABC-ATPas 100.0 6.1E-38 2.1E-42 344.5 20.9 198 119-330 3-230 (250)
98 2pjz_A Hypothetical protein ST 100.0 4.4E-38 1.5E-42 347.0 18.9 197 120-333 2-215 (263)
99 2zu0_C Probable ATP-dependent 100.0 8.7E-38 3E-42 346.2 18.9 202 118-332 19-253 (267)
100 1sgw_A Putative ABC transporte 100.0 1.1E-37 3.8E-42 333.2 12.7 188 118-322 9-210 (214)
101 1tf7_A KAIC; homohexamer, hexa 100.0 8.4E-35 2.9E-39 353.5 -2.5 169 744-955 258-444 (525)
102 3bk7_A ABC transporter ATP-bin 100.0 3.9E-32 1.3E-36 332.3 17.3 200 118-333 356-563 (607)
103 1yqt_A RNAse L inhibitor; ATP- 100.0 3.2E-32 1.1E-36 330.0 16.0 200 118-333 286-493 (538)
104 2iw3_A Elongation factor 3A; a 100.0 4.2E-31 1.4E-35 332.8 23.7 195 743-967 435-635 (986)
105 3ozx_A RNAse L inhibitor; ATP 100.0 8.9E-32 3E-36 325.1 16.3 200 118-332 268-476 (538)
106 3ux8_A Excinuclease ABC, A sub 100.0 1.2E-31 4.1E-36 335.1 14.0 204 758-970 31-301 (670)
107 3j16_B RLI1P; ribosome recycli 100.0 3.5E-31 1.2E-35 323.1 15.4 198 123-334 350-560 (608)
108 2v9p_A Replication protein E1; 100.0 3.1E-34 1.1E-38 320.9 -18.3 235 53-342 36-272 (305)
109 2v9p_A Replication protein E1; 100.0 7.5E-34 2.6E-38 317.8 -16.9 205 694-965 57-264 (305)
110 4aby_A DNA repair protein RECN 100.0 1.1E-28 3.6E-33 291.7 12.1 200 759-959 49-380 (415)
111 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.1E-31 2.1E-35 311.6 -11.6 189 743-966 118-337 (460)
112 3pih_A Uvrabc system protein A 99.9 5.3E-27 1.8E-31 295.8 21.2 102 238-339 798-908 (916)
113 2vf7_A UVRA2, excinuclease ABC 99.9 3.6E-26 1.2E-30 285.9 15.7 97 239-335 724-829 (842)
114 2r6f_A Excinuclease ABC subuni 99.9 8.1E-26 2.8E-30 282.3 18.5 99 239-337 839-946 (972)
115 2ygr_A Uvrabc system protein A 99.9 1.1E-25 3.8E-30 282.2 17.4 100 239-338 857-965 (993)
116 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.9E-28 6.5E-33 290.3 -16.2 175 140-333 130-338 (460)
117 1e69_A Chromosome segregation 99.9 7.6E-25 2.6E-29 249.7 12.8 202 762-964 16-310 (322)
118 3b85_A Phosphate starvation-in 99.9 3.3E-27 1.1E-31 251.3 -6.7 156 759-954 14-170 (208)
119 4aby_A DNA repair protein RECN 99.9 9.8E-25 3.4E-29 257.7 13.7 79 246-325 296-380 (415)
120 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.7E-23 9.1E-28 240.5 18.7 82 877-958 276-364 (365)
121 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3.4E-23 1.2E-27 239.6 14.3 84 241-324 275-364 (365)
122 4gp7_A Metallophosphoesterase; 99.9 2.5E-24 8.6E-29 222.5 2.3 149 763-948 1-168 (171)
123 1ye8_A Protein THEP1, hypothet 99.9 4.6E-24 1.6E-28 221.7 4.1 148 773-959 2-160 (178)
124 4gp7_A Metallophosphoesterase; 99.9 1.9E-24 6.6E-29 223.4 0.3 150 140-314 1-168 (171)
125 3b85_A Phosphate starvation-in 99.9 1.4E-24 4.8E-29 231.0 -2.9 146 135-321 13-171 (208)
126 1z6g_A Guanylate kinase; struc 99.9 8.2E-25 2.8E-29 235.3 -10.2 169 759-953 11-193 (218)
127 1tq4_A IIGP1, interferon-induc 99.9 2.2E-24 7.5E-29 251.1 -8.1 167 759-949 37-248 (413)
128 1e69_A Chromosome segregation 99.9 9E-22 3.1E-26 224.3 13.5 79 243-322 217-301 (322)
129 2pt7_A CAG-ALFA; ATPase, prote 99.9 5.2E-24 1.8E-28 242.8 -5.8 140 746-955 151-291 (330)
130 2dpy_A FLII, flagellum-specifi 99.8 2.3E-23 7.8E-28 245.6 -7.0 195 742-967 130-344 (438)
131 1ye8_A Protein THEP1, hypothet 99.8 5.4E-22 1.8E-26 206.1 1.2 140 150-324 2-159 (178)
132 1znw_A Guanylate kinase, GMP k 99.8 9.1E-23 3.1E-27 217.5 -5.3 167 758-952 9-202 (207)
133 3sop_A Neuronal-specific septi 99.8 6E-22 2.1E-26 219.4 -0.7 149 773-942 4-153 (270)
134 3b9q_A Chloroplast SRP recepto 99.8 3.9E-22 1.3E-26 224.3 -3.7 174 761-956 90-284 (302)
135 2o5v_A DNA replication and rep 99.8 1.1E-19 3.7E-24 208.5 15.2 81 880-965 265-354 (359)
136 1tq4_A IIGP1, interferon-induc 99.8 6.3E-22 2.2E-26 230.4 -8.5 165 135-314 36-247 (413)
137 2og2_A Putative signal recogni 99.8 3.8E-21 1.3E-25 220.1 -2.9 173 762-956 148-341 (359)
138 3aez_A Pantothenate kinase; tr 99.8 7.2E-22 2.4E-26 223.1 -9.4 177 741-954 41-245 (312)
139 1z6g_A Guanylate kinase; struc 99.8 4.4E-22 1.5E-26 214.0 -11.8 155 136-319 11-193 (218)
140 2obl_A ESCN; ATPase, hydrolase 99.8 2E-20 6.7E-25 214.1 0.1 196 742-967 44-255 (347)
141 3aez_A Pantothenate kinase; tr 99.8 3.7E-21 1.3E-25 217.3 -8.6 137 119-278 43-209 (312)
142 4ad8_A DNA repair protein RECN 99.8 9.1E-19 3.1E-23 212.2 11.8 76 879-954 395-473 (517)
143 1tf7_A KAIC; homohexamer, hexa 99.8 2E-20 6.8E-25 227.2 -3.6 167 758-954 25-210 (525)
144 2i3b_A HCR-ntpase, human cance 99.8 8.3E-21 2.8E-25 198.9 -6.4 159 771-960 1-169 (189)
145 2o8b_B DNA mismatch repair pro 99.8 6.3E-19 2.1E-23 226.4 9.1 172 742-964 749-939 (1022)
146 3qkt_A DNA double-strand break 99.7 2.1E-17 7.3E-22 189.5 18.6 78 878-955 246-332 (339)
147 2dpy_A FLII, flagellum-specifi 99.7 2.6E-20 8.8E-25 219.5 -5.8 183 118-332 130-343 (438)
148 3qkt_A DNA double-strand break 99.7 1.2E-17 4.2E-22 191.5 16.2 76 243-318 246-327 (339)
149 2eyu_A Twitching motility prot 99.7 3E-19 1E-23 196.7 2.1 132 759-953 15-147 (261)
150 2o5v_A DNA replication and rep 99.7 7.4E-18 2.5E-22 193.2 13.4 81 245-331 265-354 (359)
151 1cr0_A DNA primase/helicase; R 99.7 2.1E-18 7.3E-23 194.0 7.6 181 759-956 23-237 (296)
152 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.9E-19 6.6E-24 205.1 -1.5 131 137-321 160-291 (330)
153 2f1r_A Molybdopterin-guanine d 99.7 4.7E-20 1.6E-24 189.8 -6.8 111 772-902 3-125 (171)
154 1znw_A Guanylate kinase, GMP k 99.7 4.4E-20 1.5E-24 196.8 -10.1 166 135-318 9-202 (207)
155 2o8b_B DNA mismatch repair pro 99.7 1E-17 3.5E-22 215.3 9.2 166 118-323 749-930 (1022)
156 2jeo_A Uridine-cytidine kinase 99.7 3.5E-19 1.2E-23 194.9 -4.5 164 758-966 12-186 (245)
157 3thx_A DNA mismatch repair pro 99.7 3E-17 1E-21 208.2 11.8 167 742-966 630-812 (934)
158 3sop_A Neuronal-specific septi 99.7 4.6E-19 1.6E-23 196.2 -4.5 136 150-308 4-153 (270)
159 3b9q_A Chloroplast SRP recepto 99.7 4.4E-19 1.5E-23 199.4 -5.0 163 138-322 90-284 (302)
160 2ehv_A Hypothetical protein PH 99.7 9.4E-18 3.2E-22 183.3 4.0 179 744-952 7-206 (251)
161 2obl_A ESCN; ATPase, hydrolase 99.7 4.9E-18 1.7E-22 194.3 1.1 187 118-331 44-253 (347)
162 2ewv_A Twitching motility prot 99.7 1.1E-19 3.6E-24 210.7 -12.9 175 759-941 126-353 (372)
163 1ewq_A DNA mismatch repair pro 99.7 2.5E-17 8.6E-22 205.5 6.2 157 742-959 549-716 (765)
164 3thx_A DNA mismatch repair pro 99.7 2.8E-16 9.4E-21 199.5 14.6 168 118-331 630-811 (934)
165 2og2_A Putative signal recogni 99.7 3.1E-18 1.1E-22 195.9 -3.6 159 139-321 148-340 (359)
166 1w1w_A Structural maintenance 99.7 1.1E-16 3.7E-21 189.7 9.4 73 880-952 333-410 (430)
167 3szr_A Interferon-induced GTP- 99.6 2E-18 7E-23 212.2 -5.9 190 743-966 10-236 (608)
168 4a74_A DNA repair and recombin 99.6 4.5E-17 1.5E-21 175.6 5.2 147 767-954 21-200 (231)
169 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 3.6E-16 1.2E-20 156.8 11.1 81 241-321 53-141 (148)
170 1ewq_A DNA mismatch repair pro 99.6 1.4E-16 4.7E-21 198.9 9.9 145 118-311 549-704 (765)
171 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 3.3E-16 1.1E-20 157.0 10.3 80 876-955 53-141 (148)
172 1lvg_A Guanylate kinase, GMP k 99.6 3.4E-19 1.1E-23 188.6 -12.4 158 769-953 2-173 (198)
173 1pzn_A RAD51, DNA repair and r 99.6 1.5E-17 5.1E-22 191.1 0.3 167 759-966 118-314 (349)
174 3jvv_A Twitching mobility prot 99.6 5.6E-17 1.9E-21 186.0 4.1 147 747-954 92-246 (356)
175 1pui_A ENGB, probable GTP-bind 99.6 2.3E-17 8E-22 175.2 -0.5 169 744-928 4-198 (210)
176 2eyu_A Twitching motility prot 99.6 4.1E-17 1.4E-21 179.7 1.0 132 136-319 15-147 (261)
177 1lw7_A Transcriptional regulat 99.6 6.1E-19 2.1E-23 204.4 -14.7 176 760-967 157-355 (365)
178 2qnr_A Septin-2, protein NEDD5 99.6 3.2E-17 1.1E-21 184.6 -0.8 163 747-941 2-169 (301)
179 2i3b_A HCR-ntpase, human cance 99.6 2.7E-17 9.2E-22 172.2 -3.5 148 148-325 1-168 (189)
180 3asz_A Uridine kinase; cytidin 99.6 7.5E-18 2.6E-22 179.6 -7.9 139 768-939 3-161 (211)
181 2jeo_A Uridine-cytidine kinase 99.6 5.2E-17 1.8E-21 177.6 -1.9 146 133-306 10-166 (245)
182 1cr0_A DNA primase/helicase; R 99.6 1.9E-15 6.6E-20 169.8 10.3 170 135-322 22-237 (296)
183 2qag_C Septin-7; cell cycle, c 99.6 1.6E-16 5.4E-21 185.6 1.1 166 742-942 10-180 (418)
184 2w0m_A SSO2452; RECA, SSPF, un 99.6 4.5E-16 1.5E-20 167.7 4.5 164 759-954 10-192 (235)
185 3thx_B DNA mismatch repair pro 99.6 1.1E-15 3.9E-20 193.2 7.5 167 743-957 640-815 (918)
186 1rj9_A FTSY, signal recognitio 99.6 3.3E-16 1.1E-20 176.0 1.9 150 769-941 100-260 (304)
187 3asz_A Uridine kinase; cytidin 99.6 1.1E-17 3.8E-22 178.3 -9.8 140 145-305 3-161 (211)
188 3thx_B DNA mismatch repair pro 99.6 1.6E-15 5.6E-20 191.8 7.0 159 119-314 640-805 (918)
189 4a74_A DNA repair and recombin 99.5 1.2E-15 3.9E-20 164.5 3.6 141 144-321 21-201 (231)
190 1s96_A Guanylate kinase, GMP k 99.5 8.7E-16 3E-20 164.6 2.1 143 766-967 11-160 (219)
191 3kta_B Chromosome segregation 99.5 2E-14 6.8E-19 147.8 10.0 77 879-955 63-145 (173)
192 3jvv_A Twitching mobility prot 99.5 2.8E-15 9.5E-20 172.0 3.1 139 123-320 92-246 (356)
193 2qnr_A Septin-2, protein NEDD5 99.5 5.4E-16 1.8E-20 174.6 -3.0 155 123-306 2-168 (301)
194 1wb9_A DNA mismatch repair pro 99.5 4E-15 1.4E-19 186.9 4.5 167 743-960 577-751 (800)
195 2qag_B Septin-6, protein NEDD5 99.5 5.2E-15 1.8E-19 171.9 5.0 179 744-938 17-218 (427)
196 2ewv_A Twitching motility prot 99.5 5.3E-17 1.8E-21 188.0 -12.7 168 136-307 126-353 (372)
197 2gza_A Type IV secretion syste 99.5 2.1E-16 7.3E-21 182.4 -8.3 148 745-894 137-301 (361)
198 2ehv_A Hypothetical protein PH 99.5 4.9E-15 1.7E-19 161.6 2.1 72 248-319 120-207 (251)
199 1wb9_A DNA mismatch repair pro 99.5 5.2E-15 1.8E-19 185.8 2.5 165 119-325 577-750 (800)
200 1pzn_A RAD51, DNA repair and r 99.5 2.8E-15 9.5E-20 172.2 -0.0 158 136-328 118-310 (349)
201 2qag_C Septin-7; cell cycle, c 99.5 3.9E-15 1.3E-19 173.9 0.1 156 119-308 11-180 (418)
202 1pui_A ENGB, probable GTP-bind 99.5 6.7E-16 2.3E-20 163.9 -6.5 162 119-295 3-200 (210)
203 3kta_B Chromosome segregation 99.5 8.2E-14 2.8E-18 143.2 9.2 78 243-321 62-145 (173)
204 2w0m_A SSO2452; RECA, SSPF, un 99.5 3.6E-14 1.2E-18 152.8 6.3 169 135-321 9-193 (235)
205 1nij_A Hypothetical protein YJ 99.4 9.6E-15 3.3E-19 165.8 -0.1 153 772-941 5-191 (318)
206 1nlf_A Regulatory protein REPA 99.4 1.1E-13 3.9E-18 154.0 8.6 151 767-942 26-184 (279)
207 1odf_A YGR205W, hypothetical 3 99.4 9.3E-16 3.2E-20 171.3 -8.5 128 147-280 30-169 (290)
208 2qag_B Septin-6, protein NEDD5 99.4 2.3E-14 7.9E-19 166.5 2.7 177 119-303 16-217 (427)
209 2cvh_A DNA repair and recombin 99.4 1.2E-13 4.3E-18 147.4 7.2 149 759-954 7-185 (220)
210 2f1r_A Molybdopterin-guanine d 99.4 5.5E-16 1.9E-20 159.4 -10.8 99 149-267 3-125 (171)
211 1zp6_A Hypothetical protein AT 99.4 3.9E-15 1.3E-19 155.8 -5.3 138 767-925 5-146 (191)
212 3szr_A Interferon-induced GTP- 99.4 3.9E-15 1.3E-19 183.1 -6.3 177 119-330 10-234 (608)
213 1n0w_A DNA repair protein RAD5 99.4 2.8E-13 9.7E-18 146.9 9.0 146 767-954 20-209 (243)
214 1nlf_A Regulatory protein REPA 99.4 4E-13 1.4E-17 149.6 10.1 147 144-308 26-184 (279)
215 1odf_A YGR205W, hypothetical 3 99.4 2.5E-15 8.6E-20 167.8 -7.9 128 770-915 30-169 (290)
216 1lw7_A Transcriptional regulat 99.4 3.2E-15 1.1E-19 173.2 -8.6 72 137-208 157-248 (365)
217 1rj9_A FTSY, signal recognitio 99.4 1.9E-13 6.4E-18 153.6 3.7 138 147-307 101-260 (304)
218 3c8u_A Fructokinase; YP_612366 99.4 4.4E-15 1.5E-19 158.1 -9.3 139 768-941 19-160 (208)
219 2bdt_A BH3686; alpha-beta prot 99.3 3.1E-15 1.1E-19 156.5 -11.0 170 771-966 2-183 (189)
220 4ad8_A DNA repair protein RECN 99.3 6.5E-13 2.2E-17 160.8 7.6 77 244-321 395-474 (517)
221 2qm8_A GTPase/ATPase; G protei 99.3 2.3E-15 7.9E-20 172.0 -13.3 176 745-926 31-258 (337)
222 2yhs_A FTSY, cell division pro 99.3 1.2E-12 4.2E-17 153.8 6.9 152 762-941 284-450 (503)
223 2cvh_A DNA repair and recombin 99.3 8.8E-12 3E-16 132.9 12.5 150 136-320 7-185 (220)
224 1s96_A Guanylate kinase, GMP k 99.3 2.2E-13 7.6E-18 145.9 0.0 135 143-333 11-160 (219)
225 2oap_1 GSPE-2, type II secreti 99.3 1.7E-14 5.8E-19 173.0 -10.9 173 759-946 248-458 (511)
226 1lvg_A Guanylate kinase, GMP k 99.3 7.1E-15 2.4E-19 155.3 -13.1 147 146-319 2-173 (198)
227 1sxj_E Activator 1 40 kDa subu 99.3 3.8E-12 1.3E-16 146.4 7.7 138 773-942 38-177 (354)
228 1htw_A HI0065; nucleotide-bind 99.3 2.6E-13 9E-18 137.6 -2.3 86 747-840 11-96 (158)
229 3c8u_A Fructokinase; YP_612366 99.2 6.9E-14 2.3E-18 148.8 -7.7 133 145-307 19-160 (208)
230 2bbw_A Adenylate kinase 4, AK4 99.2 2.6E-13 8.9E-18 148.2 -4.2 138 770-927 26-197 (246)
231 3lda_A DNA repair protein RAD5 99.2 1.4E-11 4.7E-16 143.3 8.7 147 767-955 174-364 (400)
232 3auy_A DNA double-strand break 99.2 2.1E-11 7.3E-16 141.3 10.3 73 880-952 280-359 (371)
233 2gza_A Type IV secretion syste 99.2 4E-13 1.4E-17 155.0 -4.8 206 55-321 63-303 (361)
234 3e70_C DPA, signal recognition 99.2 2.5E-11 8.5E-16 137.6 8.8 160 768-957 126-307 (328)
235 1p9r_A General secretion pathw 99.2 6E-14 2.1E-18 164.0 -13.8 140 745-903 145-314 (418)
236 2rcn_A Probable GTPase ENGC; Y 99.2 1.8E-11 6.3E-16 139.5 7.0 122 760-896 205-329 (358)
237 1w1w_A Structural maintenance 99.2 3.8E-11 1.3E-15 142.0 9.3 74 245-318 333-410 (430)
238 3auy_A DNA double-strand break 99.1 5.5E-11 1.9E-15 137.8 10.0 74 244-318 279-359 (371)
239 2kjq_A DNAA-related protein; s 99.1 3.3E-11 1.1E-15 121.0 6.7 91 760-938 30-124 (149)
240 1zp6_A Hypothetical protein AT 99.1 4.3E-12 1.5E-16 132.5 -0.3 126 144-288 5-144 (191)
241 3ec2_A DNA replication protein 99.1 1.1E-11 3.9E-16 128.3 2.9 111 765-940 32-144 (180)
242 2yv5_A YJEQ protein; hydrolase 99.1 1.2E-11 4.1E-16 139.1 0.7 113 767-893 161-300 (302)
243 2x8a_A Nuclear valosin-contain 99.1 1.1E-12 3.8E-17 145.5 -8.1 144 759-924 34-191 (274)
244 1sq5_A Pantothenate kinase; P- 99.1 1.6E-12 5.3E-17 146.9 -8.5 139 742-913 36-199 (308)
245 3ec2_A DNA replication protein 99.0 1.7E-10 5.7E-15 119.4 7.3 112 142-306 32-144 (180)
246 1n0w_A DNA repair protein RAD5 99.0 1.3E-09 4.5E-14 117.9 13.4 150 144-320 20-209 (243)
247 2bdt_A BH3686; alpha-beta prot 99.0 1.8E-13 6E-18 143.1 -16.9 165 148-332 2-183 (189)
248 2bbw_A Adenylate kinase 4, AK4 99.0 8.2E-12 2.8E-16 136.3 -4.4 136 147-289 26-194 (246)
249 1htw_A HI0065; nucleotide-bind 99.0 4.4E-11 1.5E-15 121.2 1.1 80 124-207 12-99 (158)
250 2kjq_A DNAA-related protein; s 99.0 3.1E-10 1.1E-14 113.9 6.9 94 137-304 30-124 (149)
251 2rcn_A Probable GTPase ENGC; Y 99.0 5.6E-11 1.9E-15 135.5 1.5 115 136-261 204-329 (358)
252 1udx_A The GTP-binding protein 99.0 1.1E-10 3.7E-15 136.3 3.6 154 760-937 146-306 (416)
253 2yhs_A FTSY, cell division pro 99.0 1.8E-10 6E-15 135.5 4.5 144 138-303 283-447 (503)
254 1u0l_A Probable GTPase ENGC; p 99.0 1.6E-10 5.5E-15 129.9 3.9 101 766-867 164-289 (301)
255 3lnc_A Guanylate kinase, GMP k 99.0 2.1E-12 7.1E-17 139.6 -11.5 147 759-925 15-175 (231)
256 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 2.4E-12 8.2E-17 148.8 -12.7 170 767-963 16-209 (392)
257 1udx_A The GTP-binding protein 98.9 1.3E-10 4.6E-15 135.5 0.7 152 138-303 147-306 (416)
258 1nij_A Hypothetical protein YJ 98.9 4.4E-11 1.5E-15 135.6 -3.7 137 149-308 5-192 (318)
259 1ls1_A Signal recognition part 98.9 2.1E-09 7.2E-14 120.3 9.1 132 745-927 78-210 (295)
260 2oap_1 GSPE-2, type II secreti 98.9 1.2E-11 4.1E-16 148.4 -10.5 161 136-309 248-454 (511)
261 2qm8_A GTPase/ATPase; G protei 98.9 1.3E-10 4.3E-15 132.7 -1.8 160 121-290 31-257 (337)
262 3euj_A Chromosome partition pr 98.9 8.2E-10 2.8E-14 130.5 4.9 79 745-828 8-94 (483)
263 1p9r_A General secretion pathw 98.9 4.3E-11 1.5E-15 139.9 -6.8 116 137-269 158-315 (418)
264 3tr0_A Guanylate kinase, GMP k 98.8 7.7E-10 2.6E-14 116.6 3.2 72 765-840 1-73 (205)
265 3lda_A DNA repair protein RAD5 98.8 6E-09 2E-13 121.1 10.8 150 144-320 174-363 (400)
266 2px0_A Flagellar biosynthesis 98.8 1.8E-09 6.2E-14 120.8 5.4 138 769-958 103-246 (296)
267 1vma_A Cell division protein F 98.8 3.5E-09 1.2E-13 118.8 7.4 98 764-909 97-197 (306)
268 1sxj_E Activator 1 40 kDa subu 98.8 9E-09 3.1E-13 118.1 8.4 128 150-308 38-177 (354)
269 3e70_C DPA, signal recognition 98.8 8E-09 2.7E-13 117.0 7.7 135 144-304 125-278 (328)
270 1t9h_A YLOQ, probable GTPase E 98.7 9.2E-10 3.1E-14 123.2 -1.3 71 767-839 169-247 (307)
271 2yv5_A YJEQ protein; hydrolase 98.7 2E-09 6.8E-14 121.0 1.1 103 143-258 160-300 (302)
272 2dr3_A UPF0273 protein PH0284; 98.7 5.4E-09 1.8E-13 113.2 4.2 167 759-953 10-196 (247)
273 1in4_A RUVB, holliday junction 98.7 1.2E-11 4E-16 141.4 -18.6 154 747-927 22-193 (334)
274 1cke_A CK, MSSA, protein (cyti 98.7 4E-10 1.4E-14 120.9 -6.2 128 771-909 5-151 (227)
275 1oix_A RAS-related protein RAB 98.7 3.8E-09 1.3E-13 110.3 1.1 142 773-925 31-188 (191)
276 1iy2_A ATP-dependent metallopr 98.7 8.9E-11 3.1E-15 130.5 -12.2 134 745-906 51-193 (278)
277 2zr9_A Protein RECA, recombina 98.6 5.9E-08 2E-12 111.0 10.5 143 767-961 57-237 (349)
278 2ius_A DNA translocase FTSK; n 98.6 1.7E-09 5.9E-14 128.6 -2.6 159 763-940 159-343 (512)
279 4e22_A Cytidylate kinase; P-lo 98.6 4.9E-09 1.7E-13 114.7 1.0 89 769-863 25-131 (252)
280 1qhl_A Protein (cell division 98.6 1.2E-09 4.1E-14 117.1 -4.6 75 743-827 9-91 (227)
281 2px0_A Flagellar biosynthesis 98.6 4.8E-08 1.6E-12 109.3 6.8 138 146-324 103-246 (296)
282 1ixz_A ATP-dependent metallopr 98.6 2E-10 7E-15 125.7 -12.6 136 745-908 27-171 (254)
283 3k1j_A LON protease, ATP-depen 98.5 2.2E-08 7.5E-13 123.4 3.2 155 759-925 48-227 (604)
284 2dy1_A Elongation factor G; tr 98.5 4.6E-08 1.6E-12 121.4 6.1 133 765-942 3-139 (665)
285 2x8a_A Nuclear valosin-contain 98.5 1.8E-10 6.1E-15 127.7 -14.0 131 136-289 34-191 (274)
286 3a00_A Guanylate kinase, GMP k 98.5 3.4E-08 1.1E-12 102.7 3.8 128 771-906 1-169 (186)
287 1vma_A Cell division protein F 98.5 4.9E-08 1.7E-12 109.5 4.3 98 141-274 97-197 (306)
288 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 5.9E-10 2E-14 128.9 -11.7 156 144-328 16-208 (392)
289 2r6a_A DNAB helicase, replicat 98.5 2.7E-07 9.3E-12 109.6 10.9 177 759-956 191-401 (454)
290 1ls1_A Signal recognition part 98.4 5.3E-07 1.8E-11 100.8 10.3 127 120-286 77-204 (295)
291 2f9l_A RAB11B, member RAS onco 98.4 1.5E-07 5.2E-12 98.5 4.6 35 889-925 130-164 (199)
292 1t9h_A YLOQ, probable GTPase E 98.4 4.9E-08 1.7E-12 109.2 0.6 62 143-205 168-248 (307)
293 2dr3_A UPF0273 protein PH0284; 98.4 5.3E-07 1.8E-11 97.4 8.6 165 136-319 10-196 (247)
294 1sq5_A Pantothenate kinase; P- 98.3 5.6E-09 1.9E-13 117.7 -8.1 56 119-179 37-113 (308)
295 1svm_A Large T antigen; AAA+ f 98.3 7.3E-09 2.5E-13 119.3 -7.4 136 759-909 157-312 (377)
296 1u0l_A Probable GTPase ENGC; p 98.3 1.3E-07 4.4E-12 106.2 2.5 89 143-232 164-289 (301)
297 3euj_A Chromosome partition pr 98.3 3.9E-07 1.3E-11 107.7 6.3 43 136-179 18-60 (483)
298 1in4_A RUVB, holliday junction 98.3 7.1E-09 2.4E-13 118.3 -8.5 79 123-205 22-123 (334)
299 3k1j_A LON protease, ATP-depen 98.3 3.4E-08 1.2E-12 121.7 -3.3 147 135-288 47-225 (604)
300 2r6a_A DNAB helicase, replicat 98.3 7.5E-07 2.6E-11 105.9 7.5 168 136-321 191-400 (454)
301 3tr0_A Guanylate kinase, GMP k 98.3 6.1E-08 2.1E-12 101.9 -2.0 64 142-205 1-73 (205)
302 3lnc_A Guanylate kinase, GMP k 98.3 2.1E-07 7.3E-12 100.1 1.9 40 135-174 14-54 (231)
303 3ney_A 55 kDa erythrocyte memb 98.2 2.5E-07 8.7E-12 96.6 2.2 82 766-855 14-108 (197)
304 1kgd_A CASK, peripheral plasma 98.2 2.3E-07 7.9E-12 95.8 0.6 67 769-838 3-80 (180)
305 2ce7_A Cell division protein F 98.2 1.6E-06 5.4E-11 102.8 7.6 114 759-942 39-167 (476)
306 2zr9_A Protein RECA, recombina 98.2 3.6E-06 1.2E-10 96.2 10.3 144 144-326 57-236 (349)
307 3kta_A Chromosome segregation 98.1 6.5E-07 2.2E-11 92.3 2.7 38 139-177 18-55 (182)
308 1cke_A CK, MSSA, protein (cyti 98.1 5.7E-08 2E-12 104.0 -5.8 115 148-273 5-150 (227)
309 4eun_A Thermoresistant glucoki 98.1 3.4E-07 1.1E-11 96.2 -0.1 60 765-829 23-82 (200)
310 2ius_A DNA translocase FTSK; n 98.1 6.5E-07 2.2E-11 106.6 2.2 156 140-306 159-343 (512)
311 3uie_A Adenylyl-sulfate kinase 98.1 7.5E-07 2.6E-11 93.5 2.4 51 759-810 13-65 (200)
312 2qtf_A Protein HFLX, GTP-bindi 98.1 1.3E-06 4.4E-11 100.5 4.5 143 773-927 181-352 (364)
313 3nwj_A ATSK2; P loop, shikimat 98.1 2.8E-07 9.5E-12 100.4 -1.4 52 743-795 17-72 (250)
314 2j41_A Guanylate kinase; GMP, 98.1 1E-06 3.5E-11 92.5 2.8 62 766-830 1-62 (207)
315 2ce7_A Cell division protein F 98.1 5.7E-06 1.9E-10 98.1 9.1 114 137-309 40-168 (476)
316 2dhr_A FTSH; AAA+ protein, hex 98.1 1.2E-07 4.2E-12 113.0 -5.3 136 746-909 43-187 (499)
317 1zu4_A FTSY; GTPase, signal re 98.1 8.5E-07 2.9E-11 100.1 1.8 68 760-827 94-171 (320)
318 2qt1_A Nicotinamide riboside k 98.1 1.1E-06 3.7E-11 92.7 2.5 45 766-833 16-60 (207)
319 3nwj_A ATSK2; P loop, shikimat 98.0 4.3E-07 1.5E-11 98.8 -1.3 53 118-172 16-72 (250)
320 1jjv_A Dephospho-COA kinase; P 98.0 2.6E-06 8.8E-11 89.7 4.1 69 881-952 60-131 (206)
321 3a00_A Guanylate kinase, GMP k 98.0 7.5E-07 2.6E-11 92.4 -0.2 26 148-173 1-26 (186)
322 3t34_A Dynamin-related protein 98.0 6.1E-06 2.1E-10 94.9 7.0 40 135-177 24-65 (360)
323 2xau_A PRE-mRNA-splicing facto 98.0 6.4E-06 2.2E-10 103.9 7.6 67 880-946 190-260 (773)
324 3hr8_A Protein RECA; alpha and 98.0 8.3E-06 2.8E-10 93.0 7.4 59 767-828 57-116 (356)
325 3kta_A Chromosome segregation 98.0 1.6E-06 5.5E-11 89.3 1.4 69 760-829 14-90 (182)
326 2xau_A PRE-mRNA-splicing facto 97.9 6.6E-06 2.3E-10 103.8 7.0 146 144-309 105-256 (773)
327 3vaa_A Shikimate kinase, SK; s 97.9 3.6E-06 1.2E-10 88.2 3.5 45 128-172 5-49 (199)
328 1oix_A RAS-related protein RAB 97.9 8.4E-06 2.9E-10 84.7 5.4 37 252-290 152-188 (191)
329 2e87_A Hypothetical protein PH 97.9 2.6E-05 9E-10 89.5 10.0 61 879-940 230-293 (357)
330 1qhl_A Protein (cell division 97.9 8.1E-07 2.8E-11 95.1 -2.9 50 119-179 9-58 (227)
331 3kl4_A SRP54, signal recogniti 97.9 3E-05 1E-09 90.6 9.9 40 770-809 96-135 (433)
332 3t34_A Dynamin-related protein 97.8 2.4E-05 8.1E-10 90.0 8.3 46 759-807 25-72 (360)
333 4e22_A Cytidylate kinase; P-lo 97.8 8.1E-07 2.8E-11 97.0 -3.9 60 146-205 25-114 (252)
334 2vp4_A Deoxynucleoside kinase; 97.8 2E-06 6.8E-11 92.5 -1.1 62 766-831 15-86 (230)
335 3tau_A Guanylate kinase, GMP k 97.8 5.4E-06 1.8E-10 87.6 1.5 29 769-797 6-34 (208)
336 2e87_A Hypothetical protein PH 97.8 4.6E-05 1.6E-09 87.5 9.4 119 148-302 167-287 (357)
337 3tqc_A Pantothenate kinase; bi 97.7 6.9E-07 2.4E-11 100.6 -7.0 126 136-278 74-211 (321)
338 2ffh_A Protein (FFH); SRP54, s 97.7 4E-05 1.4E-09 89.4 7.6 148 762-937 91-246 (425)
339 1jjv_A Dephospho-COA kinase; P 97.7 3.3E-05 1.1E-09 81.1 6.1 70 246-319 60-132 (206)
340 3vaa_A Shikimate kinase, SK; s 97.7 1.7E-05 5.7E-10 83.1 3.7 38 758-795 12-49 (199)
341 4a1f_A DNAB helicase, replicat 97.7 5.2E-05 1.8E-09 85.8 7.9 127 759-937 34-164 (338)
342 2j41_A Guanylate kinase; GMP, 97.7 1.8E-05 6.1E-10 83.0 3.7 35 143-177 1-35 (207)
343 1rz3_A Hypothetical protein rb 97.6 1.5E-05 5.1E-10 83.7 2.0 46 768-813 19-64 (201)
344 4a1f_A DNAB helicase, replicat 97.6 1.9E-05 6.6E-10 89.3 2.9 126 136-303 34-164 (338)
345 2qt1_A Nicotinamide riboside k 97.6 3.4E-05 1.2E-09 81.1 4.6 49 144-206 17-65 (207)
346 3ice_A Transcription terminati 97.6 9.7E-06 3.3E-10 91.9 0.1 55 741-796 131-199 (422)
347 2z43_A DNA repair and recombin 97.6 4.8E-05 1.6E-09 86.1 5.8 28 767-794 103-130 (324)
348 3cr8_A Sulfate adenylyltranfer 97.5 3.9E-06 1.3E-10 101.3 -4.0 43 767-809 365-409 (552)
349 1fnn_A CDC6P, cell division co 97.5 0.00012 4E-09 84.4 8.4 45 897-942 124-172 (389)
350 2f9l_A RAB11B, member RAS onco 97.5 0.00015 5.2E-09 75.4 7.9 35 254-290 130-164 (199)
351 2z4s_A Chromosomal replication 97.5 6.2E-05 2.1E-09 88.8 5.1 67 897-963 193-264 (440)
352 1kgd_A CASK, peripheral plasma 97.5 4.6E-05 1.6E-09 78.4 3.3 29 146-174 3-31 (180)
353 1fnn_A CDC6P, cell division co 97.4 0.00038 1.3E-08 80.1 11.2 125 147-308 41-172 (389)
354 2dy1_A Elongation factor G; tr 97.4 3.1E-05 1.1E-09 96.1 1.7 124 142-308 3-139 (665)
355 3tqc_A Pantothenate kinase; bi 97.4 2.3E-05 8E-10 88.1 0.4 46 759-804 74-127 (321)
356 1knq_A Gluconate kinase; ALFA/ 97.4 5.4E-05 1.9E-09 77.2 2.8 38 769-810 6-43 (175)
357 3bh0_A DNAB-like replicative h 97.4 0.00014 4.8E-09 81.9 6.5 107 136-276 56-164 (315)
358 2qtf_A Protein HFLX, GTP-bindi 97.4 2.6E-05 9E-10 89.6 0.4 48 239-290 298-350 (364)
359 1ega_A Protein (GTP-binding pr 97.4 4E-05 1.4E-09 85.8 1.8 152 770-948 7-169 (301)
360 1v5w_A DMC1, meiotic recombina 97.4 0.00013 4.4E-09 83.2 5.7 28 767-794 118-145 (343)
361 3ice_A Transcription terminati 97.4 2.9E-05 9.8E-10 88.1 0.2 52 119-172 133-198 (422)
362 3hr8_A Protein RECA; alpha and 97.3 0.00091 3.1E-08 76.2 11.8 51 136-193 47-99 (356)
363 3tau_A Guanylate kinase, GMP k 97.3 0.00012 4.1E-09 77.2 4.1 29 146-174 6-34 (208)
364 3lxx_A GTPase IMAP family memb 97.3 0.001 3.6E-08 71.3 11.3 29 773-801 31-59 (239)
365 1zu4_A FTSY; GTPase, signal re 97.3 0.0001 3.5E-09 83.1 3.3 40 138-177 95-134 (320)
366 3uie_A Adenylyl-sulfate kinase 97.3 5.5E-05 1.9E-09 79.2 0.9 42 135-177 12-53 (200)
367 1sxj_C Activator 1 40 kDa subu 97.2 5.2E-05 1.8E-09 86.3 0.7 43 759-801 32-76 (340)
368 3ney_A 55 kDa erythrocyte memb 97.2 0.00016 5.6E-09 75.3 3.7 32 142-173 13-44 (197)
369 2p67_A LAO/AO transport system 97.2 4.9E-05 1.7E-09 86.7 -0.3 51 759-809 44-94 (341)
370 3m6a_A ATP-dependent protease 97.1 7.3E-05 2.5E-09 90.6 0.5 49 759-808 97-145 (543)
371 1v5w_A DMC1, meiotic recombina 97.1 0.0013 4.3E-08 75.0 10.7 135 144-305 118-274 (343)
372 2qby_A CDC6 homolog 1, cell di 97.1 0.00045 1.5E-08 79.2 7.1 31 769-799 43-73 (386)
373 1svm_A Large T antigen; AAA+ f 97.1 9E-05 3.1E-09 85.2 1.1 37 136-172 157-193 (377)
374 1mky_A Probable GTP-binding pr 97.1 0.00023 7.8E-09 84.0 4.4 56 772-827 181-248 (439)
375 4eun_A Thermoresistant glucoki 97.1 0.0002 6.8E-09 74.9 3.5 31 142-172 23-53 (200)
376 2www_A Methylmalonic aciduria 97.1 0.00013 4.6E-09 83.3 2.1 43 769-811 72-114 (349)
377 3b9p_A CG5977-PA, isoform A; A 97.1 0.0018 6.3E-08 71.7 11.0 69 883-951 98-186 (297)
378 3bh0_A DNAB-like replicative h 97.0 0.00039 1.3E-08 78.2 5.2 107 759-910 56-163 (315)
379 1ypw_A Transitional endoplasmi 97.0 0.00013 4.4E-09 92.6 1.2 32 766-797 233-264 (806)
380 3b9p_A CG5977-PA, isoform A; A 97.0 0.0017 5.7E-08 72.0 9.9 76 147-278 53-128 (297)
381 2pez_A Bifunctional 3'-phospho 97.0 0.00016 5.4E-09 74.1 1.3 40 769-809 3-44 (179)
382 1j8m_F SRP54, signal recogniti 97.0 0.00098 3.3E-08 74.2 7.3 47 764-811 92-138 (297)
383 2z4s_A Chromosomal replication 96.9 0.0013 4.4E-08 77.6 8.7 43 263-305 194-237 (440)
384 2qby_A CDC6 homolog 1, cell di 96.9 0.00094 3.2E-08 76.5 7.2 30 146-175 43-72 (386)
385 1rz3_A Hypothetical protein rb 96.9 0.00022 7.6E-09 74.6 1.7 33 145-177 19-51 (201)
386 1ega_A Protein (GTP-binding pr 96.9 0.0004 1.4E-08 77.6 3.8 47 147-193 7-55 (301)
387 1f6b_A SAR1; gtpases, N-termin 96.9 0.00021 7.2E-09 74.4 1.4 41 751-793 7-47 (198)
388 2z43_A DNA repair and recombin 96.9 0.0025 8.7E-08 71.8 10.3 135 144-305 103-258 (324)
389 1ixz_A ATP-dependent metallopr 96.9 0.00019 6.4E-09 78.0 0.6 47 122-173 28-74 (254)
390 1u94_A RECA protein, recombina 96.9 0.0051 1.7E-07 70.2 12.4 37 759-795 49-87 (356)
391 1m2o_B GTP-binding protein SAR 96.8 0.00069 2.4E-08 69.9 4.5 34 759-793 12-45 (190)
392 1kag_A SKI, shikimate kinase I 96.8 0.00046 1.6E-08 69.9 3.0 33 770-806 3-35 (173)
393 1kag_A SKI, shikimate kinase I 96.8 0.00043 1.5E-08 70.1 2.8 27 147-173 3-29 (173)
394 1iy2_A ATP-dependent metallopr 96.8 0.00023 7.7E-09 78.5 0.6 46 123-173 53-98 (278)
395 3lxx_A GTPase IMAP family memb 96.8 0.0044 1.5E-07 66.4 10.9 27 150-176 31-57 (239)
396 4eaq_A DTMP kinase, thymidylat 96.8 0.0004 1.4E-08 74.4 2.5 43 761-804 13-58 (229)
397 1lv7_A FTSH; alpha/beta domain 96.8 0.0035 1.2E-07 67.9 10.0 34 761-796 37-70 (257)
398 3kl4_A SRP54, signal recogniti 96.8 0.0016 5.4E-08 76.1 7.5 107 147-286 96-205 (433)
399 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00067 2.3E-08 67.5 3.8 31 139-170 15-45 (149)
400 2gj8_A MNME, tRNA modification 96.8 0.00084 2.9E-08 68.1 4.5 27 769-795 2-28 (172)
401 2vp4_A Deoxynucleoside kinase; 96.8 0.00041 1.4E-08 74.2 2.3 30 142-171 14-43 (230)
402 3llm_A ATP-dependent RNA helic 96.7 0.002 6.8E-08 69.0 7.5 25 768-792 73-97 (235)
403 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00079 2.7E-08 67.0 3.9 31 762-793 15-45 (149)
404 2ffh_A Protein (FFH); SRP54, s 96.7 0.0025 8.7E-08 74.2 8.6 47 123-176 80-126 (425)
405 1l8q_A Chromosomal replication 96.7 0.0019 6.5E-08 72.7 7.4 28 147-174 36-63 (324)
406 1m7g_A Adenylylsulfate kinase; 96.7 0.00027 9.2E-09 74.5 0.3 41 766-806 20-62 (211)
407 1knq_A Gluconate kinase; ALFA/ 96.7 0.00065 2.2E-08 69.0 3.0 27 146-172 6-32 (175)
408 3cf0_A Transitional endoplasmi 96.7 0.0023 8E-08 71.3 7.6 31 766-796 44-74 (301)
409 1l8q_A Chromosomal replication 96.6 0.003 1E-07 71.0 8.2 28 771-798 37-64 (324)
410 3cr8_A Sulfate adenylyltranfer 96.6 0.00044 1.5E-08 83.4 1.0 34 144-177 365-398 (552)
411 1ypw_A Transitional endoplasmi 96.6 0.0032 1.1E-07 79.8 8.9 33 764-796 504-536 (806)
412 3r20_A Cytidylate kinase; stru 96.6 0.00069 2.4E-08 72.5 2.2 32 771-802 9-43 (233)
413 4fcw_A Chaperone protein CLPB; 96.6 0.0048 1.6E-07 68.6 9.3 32 771-802 47-78 (311)
414 1sxj_D Activator 1 41 kDa subu 96.6 0.00047 1.6E-08 78.4 0.9 44 898-942 133-176 (353)
415 2qor_A Guanylate kinase; phosp 96.5 0.00045 1.5E-08 72.4 0.5 30 767-796 8-37 (204)
416 2w58_A DNAI, primosome compone 96.5 0.0023 7.8E-08 66.6 5.6 27 772-798 55-81 (202)
417 4eaq_A DTMP kinase, thymidylat 96.5 0.0012 4E-08 70.7 3.4 38 137-174 12-52 (229)
418 3llm_A ATP-dependent RNA helic 96.5 0.00084 2.9E-08 72.0 2.2 127 144-289 72-203 (235)
419 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0014 4.9E-08 75.4 3.8 41 767-807 18-69 (396)
420 2p67_A LAO/AO transport system 96.3 0.00056 1.9E-08 77.9 -0.4 52 136-194 44-95 (341)
421 3dm5_A SRP54, signal recogniti 96.3 0.016 5.5E-07 67.6 11.6 35 770-804 99-133 (443)
422 3lxw_A GTPase IMAP family memb 96.3 0.0061 2.1E-07 65.8 7.6 23 773-795 23-45 (247)
423 3h4m_A Proteasome-activating n 96.3 0.0098 3.3E-07 65.3 9.4 28 768-795 48-75 (285)
424 2wji_A Ferrous iron transport 96.3 0.0035 1.2E-07 62.8 5.2 25 772-796 4-28 (165)
425 4dcu_A GTP-binding protein ENG 96.3 0.0046 1.6E-07 73.2 7.0 57 883-942 87-144 (456)
426 3h4m_A Proteasome-activating n 96.2 0.011 3.9E-07 64.7 9.6 28 145-172 48-75 (285)
427 3bos_A Putative DNA replicatio 96.2 0.0023 7.9E-08 67.9 3.7 28 770-797 51-78 (242)
428 2wjg_A FEOB, ferrous iron tran 96.2 0.0027 9.3E-08 64.7 4.0 22 773-794 9-30 (188)
429 2qag_A Septin-2, protein NEDD5 96.2 0.00044 1.5E-08 79.4 -2.2 58 741-806 15-72 (361)
430 1y63_A LMAJ004144AAA protein; 96.2 0.0023 7.9E-08 65.7 3.3 32 140-171 2-33 (184)
431 1njg_A DNA polymerase III subu 96.1 0.0061 2.1E-07 64.2 6.7 45 897-942 125-169 (250)
432 2yvu_A Probable adenylyl-sulfa 96.1 0.0017 6E-08 66.6 2.2 40 766-805 8-48 (186)
433 2www_A Methylmalonic aciduria 96.1 0.0021 7.3E-08 73.2 2.8 41 147-194 73-113 (349)
434 3qks_A DNA double-strand break 96.1 0.0031 1.1E-07 66.1 3.8 30 140-170 16-45 (203)
435 1y63_A LMAJ004144AAA protein; 96.0 0.0028 9.5E-08 65.1 3.3 32 763-794 2-33 (184)
436 3bos_A Putative DNA replicatio 96.0 0.0043 1.5E-07 65.8 4.8 27 147-173 51-77 (242)
437 2qor_A Guanylate kinase; phosp 96.0 0.0024 8.3E-08 66.7 2.6 30 144-173 8-37 (204)
438 4fcw_A Chaperone protein CLPB; 96.0 0.011 3.6E-07 65.8 8.0 28 149-176 48-75 (311)
439 2i1q_A DNA repair and recombin 96.0 0.019 6.5E-07 64.4 10.1 27 767-793 94-120 (322)
440 2pez_A Bifunctional 3'-phospho 96.0 0.0031 1.1E-07 64.3 3.2 29 146-174 3-31 (179)
441 3qks_A DNA double-strand break 96.0 0.0039 1.3E-07 65.3 3.9 30 762-792 15-44 (203)
442 2q6t_A DNAB replication FORK h 95.9 0.017 5.7E-07 68.1 9.7 106 136-276 188-295 (444)
443 2w58_A DNAI, primosome compone 95.9 0.0057 1.9E-07 63.5 4.8 26 149-174 55-80 (202)
444 1np6_A Molybdopterin-guanine d 95.9 0.0033 1.1E-07 64.1 2.9 38 771-808 6-46 (174)
445 3n70_A Transport activator; si 95.9 0.028 9.5E-07 55.1 9.5 28 770-797 23-50 (145)
446 2gj8_A MNME, tRNA modification 95.8 0.0045 1.5E-07 62.6 3.6 27 146-172 2-28 (172)
447 1m2o_B GTP-binding protein SAR 95.7 0.0057 2E-07 62.9 4.0 35 136-171 12-46 (190)
448 3t61_A Gluconokinase; PSI-biol 95.7 0.003 1E-07 65.8 1.6 32 771-806 18-49 (202)
449 3lxw_A GTPase IMAP family memb 95.6 0.036 1.2E-06 59.7 10.1 60 247-307 86-151 (247)
450 2if2_A Dephospho-COA kinase; a 95.6 0.0055 1.9E-07 63.7 3.5 21 773-793 3-23 (204)
451 1u94_A RECA protein, recombina 95.6 0.0088 3E-07 68.2 5.3 49 136-192 49-100 (356)
452 4dcu_A GTP-binding protein ENG 95.6 0.0094 3.2E-07 70.5 5.8 55 248-306 87-142 (456)
453 2zej_A Dardarin, leucine-rich 95.6 0.0061 2.1E-07 62.2 3.5 26 773-798 4-29 (184)
454 2if2_A Dephospho-COA kinase; a 95.5 0.0052 1.8E-07 63.9 2.9 21 150-170 3-23 (204)
455 1f6b_A SAR1; gtpases, N-termin 95.5 0.002 6.7E-08 67.0 -0.6 43 126-171 6-48 (198)
456 2p5t_B PEZT; postsegregational 95.5 0.0036 1.2E-07 67.9 1.4 41 767-809 28-68 (253)
457 1m7g_A Adenylylsulfate kinase; 95.4 0.0023 7.7E-08 67.3 -0.3 35 143-177 20-54 (211)
458 4ag6_A VIRB4 ATPase, type IV s 95.4 0.0072 2.5E-07 70.0 3.7 36 770-805 34-69 (392)
459 1jal_A YCHF protein; nucleotid 95.4 0.011 3.7E-07 67.4 5.0 36 771-806 2-48 (363)
460 2yvu_A Probable adenylyl-sulfa 95.4 0.0044 1.5E-07 63.6 1.6 32 144-175 9-40 (186)
461 1xp8_A RECA protein, recombina 95.3 0.083 2.8E-06 60.3 12.1 28 767-794 70-97 (366)
462 2q6t_A DNAB replication FORK h 95.3 0.018 6.3E-07 67.7 7.0 108 759-911 188-295 (444)
463 2dhr_A FTSH; AAA+ protein, hex 95.3 0.0039 1.3E-07 74.2 1.2 36 136-173 54-89 (499)
464 3d8b_A Fidgetin-like protein 1 95.3 0.064 2.2E-06 61.1 11.1 27 769-795 115-141 (357)
465 2v1u_A Cell division control p 95.3 0.0097 3.3E-07 68.0 4.1 28 769-796 42-69 (387)
466 3ihw_A Centg3; RAS, centaurin, 95.2 0.016 5.6E-07 59.1 5.4 28 773-800 22-54 (184)
467 2ga8_A Hypothetical 39.9 kDa p 95.2 0.0035 1.2E-07 70.8 0.1 38 759-796 10-49 (359)
468 3t61_A Gluconokinase; PSI-biol 95.1 0.0088 3E-07 62.1 2.9 25 148-172 18-42 (202)
469 2ga8_A Hypothetical 39.9 kDa p 95.1 0.0038 1.3E-07 70.6 0.1 37 136-172 10-48 (359)
470 2wji_A Ferrous iron transport 95.1 0.013 4.5E-07 58.5 4.1 24 150-173 5-28 (165)
471 3bgw_A DNAB-like replicative h 95.1 0.02 6.8E-07 67.3 6.2 107 137-280 186-295 (444)
472 3cm0_A Adenylate kinase; ATP-b 95.1 0.0092 3.2E-07 60.9 2.9 27 146-172 2-28 (186)
473 3m6a_A ATP-dependent protease 95.1 0.0046 1.6E-07 74.8 0.7 38 136-174 97-134 (543)
474 2qgz_A Helicase loader, putati 95.0 0.014 4.6E-07 65.3 4.4 26 771-796 152-177 (308)
475 2zej_A Dardarin, leucine-rich 95.0 0.011 3.8E-07 60.2 3.4 25 150-174 4-28 (184)
476 3cm0_A Adenylate kinase; ATP-b 95.0 0.011 3.6E-07 60.5 3.1 27 769-795 2-28 (186)
477 1fzq_A ADP-ribosylation factor 95.0 0.013 4.4E-07 59.7 3.6 23 772-794 17-39 (181)
478 1njg_A DNA polymerase III subu 94.9 0.048 1.6E-06 57.2 8.1 44 263-308 126-169 (250)
479 2qz4_A Paraplegin; AAA+, SPG7, 94.9 0.11 3.6E-06 56.0 10.8 27 769-795 37-63 (262)
480 1q3t_A Cytidylate kinase; nucl 94.8 0.015 5E-07 62.2 3.8 27 769-795 14-40 (236)
481 2b8t_A Thymidine kinase; deoxy 94.8 0.033 1.1E-06 59.0 6.4 51 898-952 89-150 (223)
482 3syl_A Protein CBBX; photosynt 94.8 0.2 6.9E-06 55.2 13.2 26 771-796 67-92 (309)
483 1qhx_A CPT, protein (chloramph 94.8 0.016 5.3E-07 58.7 3.7 27 147-173 2-28 (178)
484 1xwi_A SKD1 protein; VPS4B, AA 94.7 0.12 4.3E-06 57.8 11.3 27 769-795 43-69 (322)
485 2chg_A Replication factor C sm 94.7 0.057 2E-06 55.9 7.8 44 897-941 101-144 (226)
486 1lv7_A FTSH; alpha/beta domain 94.6 0.012 4.1E-07 63.7 2.5 34 138-173 37-70 (257)
487 1j8m_F SRP54, signal recogniti 94.6 0.0061 2.1E-07 67.8 0.1 47 139-193 89-136 (297)
488 1q3t_A Cytidylate kinase; nucl 94.6 0.016 5.5E-07 61.9 3.5 28 145-172 13-40 (236)
489 3kb2_A SPBC2 prophage-derived 94.6 0.017 5.7E-07 57.9 3.4 23 150-172 3-25 (173)
490 1uf9_A TT1252 protein; P-loop, 94.6 0.016 5.4E-07 59.9 3.2 31 771-806 8-38 (203)
491 1ko7_A HPR kinase/phosphatase; 94.6 0.023 7.9E-07 63.2 4.7 33 760-793 134-166 (314)
492 3bgw_A DNAB-like replicative h 94.6 0.062 2.1E-06 63.1 8.5 34 760-793 186-219 (444)
493 2qag_A Septin-2, protein NEDD5 94.5 0.0032 1.1E-07 72.1 -2.5 47 119-174 17-63 (361)
494 2vhj_A Ntpase P4, P4; non- hyd 94.5 0.048 1.7E-06 60.7 7.0 29 143-171 118-146 (331)
495 2jaq_A Deoxyguanosine kinase; 94.5 0.018 6.2E-07 59.4 3.4 23 773-795 2-24 (205)
496 1np6_A Molybdopterin-guanine d 94.4 0.019 6.4E-07 58.5 3.2 27 148-174 6-32 (174)
497 1kht_A Adenylate kinase; phosp 94.4 0.02 7E-07 58.4 3.6 26 147-172 2-27 (192)
498 2wjg_A FEOB, ferrous iron tran 94.4 0.019 6.5E-07 58.3 3.3 22 150-171 9-30 (188)
499 1qhx_A CPT, protein (chloramph 94.4 0.022 7.7E-07 57.5 3.8 26 771-796 3-28 (178)
500 2p5t_B PEZT; postsegregational 94.4 0.0093 3.2E-07 64.6 1.0 29 145-173 29-57 (253)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9.5e-142 Score=1408.46 Aligned_cols=929 Identities=21% Similarity=0.281 Sum_probs=703.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC---CCCCCC
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPP---LTSGLP 118 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~---~~~~~~ 118 (1128)
++++++|++.+..|.++++.+|+++.++..+..|+..++..+..+.++.+|++||.++++.++....+... ..+...
T Consensus 335 ~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g 414 (1321)
T 4f4c_A 335 ALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKG 414 (1321)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCC
Confidence 34567788888999999999999999999999999999999999999999999999999876543221111 112234
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++||+|+|++.+++++|+|+||+|++|+++|||||||||||||+++|+|+++|++|.+.. +|++|
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 699999999998767789999999999999999999999999999999999999999875432 45579
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
|||+|+||||++||+|||+||.+ .+++++.++++.|+++++++.+|+|++|.|||+|.+|||||||||+||||+|++|+
T Consensus 495 ~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~ 574 (1321)
T 4f4c_A 495 AVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK 574 (1321)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCS
T ss_pred cccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999975 68899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHh
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 345 (1128)
|||||||||+||+++++.+.+ ++....+|+|+|+||||++.++.||+|++|++|+|+++|+|+||+++++.|.+++..+
T Consensus 575 IliLDE~tSaLD~~te~~i~~-~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q 653 (1321)
T 4f4c_A 575 ILLLDEATSALDAESEGIVQQ-ALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQ 653 (1321)
T ss_dssp EEEEESTTTTSCTTTHHHHHH-HHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHH
T ss_pred EEEEecccccCCHHHHHHHHH-HHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhh
Confidence 999999999999999777665 5566678999999999999999999999999999999999999999999999988765
Q ss_pred chhhhhhhhcccCccccC----CC-C----CCCCCCCCCCCCC----------cc--ccccccccc--hhhhhhhhhhhc
Q 001189 346 GKMEEYVEEKEDGETVDN----KT-S----KPAANGVDNDLPK----------EA--SDTRKTKEG--KSVLIKQEERET 402 (1128)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~----~~-~----~~~~~~~~~~~~~----------~~--~~~~~~~~~--~~~~~~~~~~~~ 402 (1128)
...+......+.....++ .. . ........+.... .. ...+....+ ......++.+..
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1321)
T 4f4c_A 654 TFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEEN 733 (1321)
T ss_dssp HHHHHHHHHHCC--------------------------------------------------CCCCCCHHHHHHHTTTTS
T ss_pred hcccccccccccccccccccccccccccccccccccccchhhhhhccccccccCCcchhHHHhhccchhHHHHHHHHHHc
Confidence 432221111000000000 00 0 0000000000000 00 000000000 000111222233
Q ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----ccCCCChhHHHHHHHHHHHHHHHHHHH
Q 001189 403 GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQS----SLKTHGPLFYNTIYSLLSFGQVLVTLA 478 (1128)
Q Consensus 403 g~~~~~~~~~y~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~i~~~l~~~~~~~~~~ 478 (1128)
+...+..++.|+...+.++.+++.+++..+...+....+.|+..|.+.. ........+|..+|++++++..++.++
T Consensus 734 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~ 813 (1321)
T 4f4c_A 734 NAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFL 813 (1321)
T ss_dssp CCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433333333333333333333333444555554332 222234567888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--CChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 479 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI 556 (1128)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~ 556 (1128)
..+++...+.+++.++|.+++++++++|+.||+. +++|+++|||++|++.+|..++..+..++..++.+++.++++.+
T Consensus 814 ~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~ 893 (1321)
T 4f4c_A 814 MTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF 893 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehH
Confidence 9999999999999999999999999999999985 89999999999999999999998888888888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001189 557 VSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTL 636 (1128)
Q Consensus 557 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~ 636 (1128)
..+...+++++++++++....++.+..+..........++....+.|+++|+++||+|+.++++.+++.+..+...+..+
T Consensus 894 ~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 973 (1321)
T 4f4c_A 894 YGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAI 973 (1321)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 66655554444444433333333222111111112223445667889999999999999999999999988887776655
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 637 VNMGANRWLAIRL----EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAV 712 (1128)
Q Consensus 637 ~~~~~~~wl~~~l----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~ 712 (1128)
.......+..... .+...+++++++.+........+ ...+..++.+......++..+...+...+..+.++
T Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~ 1048 (1321)
T 4f4c_A 974 KEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQ-----PMRVLRVMYAITISTSTLGFATSYFPEYAKATFAG 1048 (1321)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSC-----HHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333222222 22222222222221111111111 11111111122222334455566677788899999
Q ss_pred HHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHH
Q 001189 713 ERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 791 (1128)
Q Consensus 713 ~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l 791 (1128)
+|+.++++.+++.+. ...+++.||..|.|+|+||+|+|+.+ ..+||+|+||+|+|||+||||||||||||||+++|
T Consensus 1049 ~ri~~~l~~~~~~~~---~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL 1125 (1321)
T 4f4c_A 1049 GIIFGMLRKISKIDS---LSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL 1125 (1321)
T ss_dssp HHHHHHHHCCCSSCT---TCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHH
T ss_pred HHHHHHhhCcccCCC---ccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHH
Confidence 999999987665322 23345568889999999999999743 23799999999999999999999999999999999
Q ss_pred hcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccC---CCCCHHHHHHHHHHhcHHHHHHHccC
Q 001189 792 FRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSL 868 (1128)
Q Consensus 792 ~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~---~~~~~~~i~~~l~~~~l~~~i~~lp~ 868 (1128)
+|+|+|++|+|.|||+|+++++++++|++|+||||||.||+||||+||.++ .+.+|++++++++.++++++++++|.
T Consensus 1126 ~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~ 1205 (1321)
T 4f4c_A 1126 ERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPE 1205 (1321)
T ss_dssp TTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTT
T ss_pred hcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcC
Confidence 999999999999999999999999999999999999999999999998654 35789999999999999999999999
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEE
Q 001189 869 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI 948 (1128)
Q Consensus 869 Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i 948 (1128)
||||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|+++|++.+++||+|+||||++++.+||||
T Consensus 1206 GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I 1285 (1321)
T 4f4c_A 1206 GFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCI 1285 (1321)
T ss_dssp TTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEE
T ss_pred CCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCEEEEecChhHHhhcCCCchHHHHHhh
Q 001189 949 LLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 949 ~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
+||++|+|+|+|+|+||++++ +.|++|++.+
T Consensus 1286 ~Vld~G~IvE~Gth~eLl~~~-g~y~~L~~~Q 1316 (1321)
T 4f4c_A 1286 AVVSNGTIIEKGTHTQLMSEK-GAYYKLTQKQ 1316 (1321)
T ss_dssp EEESSSSEEEEECHHHHHHCC-----------
T ss_pred EEEECCEEEEECCHHHHHhCC-cHHHHHHHHH
Confidence 999999999999999999974 6799888753
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1e-120 Score=1204.73 Aligned_cols=921 Identities=21% Similarity=0.310 Sum_probs=664.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CC--CCCCCCC
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NP--PLTSGLP 118 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~-~~--~~~~~~~ 118 (1128)
++++++|.+.+..|.++++.+++++.++..+..|+..+...+..+..+.++++|+.++++.+++.... .. ...+...
T Consensus 307 ~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g 386 (1284)
T 3g5u_A 307 ALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQG 386 (1284)
T ss_dssp HHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCC
Confidence 44567888888899999999998888888888899999999999999999999999999876532211 11 1111234
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++|++|+|+.++++++|+|+||+|++|++++||||||||||||+++|+|+++|++|.+.. +|++|
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 466 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII 466 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence 699999999998655568999999999999999999999999999999999999999875432 24469
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
|||||+|++|++||+|||.+|.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+|||||+++|+
T Consensus 467 ~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ 546 (1284)
T 3g5u_A 467 GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546 (1284)
T ss_dssp EEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999864 67889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHh
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 345 (1128)
|||||||||+||+++++.+.+. ++...+|+|+|+||||++++..||+|++|++|+|+++|+++++++.++.|.++...+
T Consensus 547 iliLDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 625 (1284)
T 3g5u_A 547 ILLLDEATSALDTESEAVVQAA-LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQ 625 (1284)
T ss_dssp EEEEESTTCSSCHHHHHHHHHH-HHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHh
Confidence 9999999999999999888765 444557999999999999999999999999999999999999999988888876543
Q ss_pred chhhhhhhhccc---CccccC-CCC-CCCCCCCCCCCCCccccccccccchhhhhhhhhhh--cccchHHHHHHHHHHhh
Q 001189 346 GKMEEYVEEKED---GETVDN-KTS-KPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERE--TGVVSFKVLSRYKDALG 418 (1128)
Q Consensus 346 ~~~~~~~~~~~~---~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~y~~~~g 418 (1128)
....+....... ...... ... .............. ...............++... .....+..+.+|.+..
T Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 703 (1284)
T 3g5u_A 626 TAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTR-KSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTE- 703 (1284)
T ss_dssp C----------------------------------------------------------CCCCCSCCCTTHHHHHHHHT-
T ss_pred hhcccccccccccccccccccccccccccccccccccccc-cccccccccccccchhhhhhccccchHHHHHHHHhcch-
Confidence 221110000000 000000 000 00000000000000 00000000000000001100 1111222222222221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhcccccC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 419 GLWVVLILLLCYFLTETLRVSSS----TWLSYWTDQSSLK--THGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 492 (1128)
Q Consensus 419 ~~~~~~~~~~~~~l~~~~~~~~~----~~l~~~~~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 492 (1128)
++.+++.+++.++...+....+ .++..|.+..... .....+|..+|++++++..++.+++.+++...+.+...
T Consensus 704 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~ 782 (1284)
T 3g5u_A 704 -WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTK 782 (1284)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222222222222222223 3333333221100 11234566778888888888889999999999999999
Q ss_pred HHHHHHHHHHHcCCccccc--cCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001189 493 RLHDAMLHSILRAPMVFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST---MSLWAIMP 567 (1128)
Q Consensus 493 ~l~~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 567 (1128)
++|.+++++++++|+.||+ ++++|++++|+++|+..++..+...+..++..+..++..++++.+..+ +..++++|
T Consensus 783 ~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p 862 (1284)
T 3g5u_A 783 RLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVP 862 (1284)
T ss_dssp HHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999 589999999999999999988877777666666665555554444333 22333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 568 LLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAI 647 (1128)
Q Consensus 568 ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 647 (1128)
+++++......+. +..........+.....+.|+++|+++||+|+.++++.+.+.+..+...+...... .|.++
T Consensus 863 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 936 (1284)
T 3g5u_A 863 IIAIAGVVEMKML---SGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKA---HVFGI 936 (1284)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 4433322222111 11111111122334457899999999999999999999888877766554433322 22222
Q ss_pred HHHHHHHHHHHHHHH---HHH--HhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001189 648 RLEIVGGLMIWLTAT---FAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 722 (1128)
Q Consensus 648 ~l~~~~~~~~~~~~~---~~v--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~ 722 (1128)
...+...+..+..+. +.. ...+..+... +..++.+......++..+............+.+|+.++++.+
T Consensus 937 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~ 1011 (1284)
T 3g5u_A 937 TFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFEN-----VLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKT 1011 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTT-----HHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222221111111111 110 0111111111 111112222222333333333334556778999999998876
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCce
Q 001189 723 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 801 (1128)
Q Consensus 723 ~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~ 801 (1128)
++.+..... ....++..|.|+++||+|+|+.. ..++|+|+||+|++||++|||||||||||||+++|+|+++|++|+
T Consensus 1012 ~~~~~~~~~--~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~ 1089 (1284)
T 3g5u_A 1012 PEIDSYSTQ--GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089 (1284)
T ss_dssp CSSSSCCSS--CCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEE
T ss_pred Ccccccccc--cccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 553221111 12234557889999999999643 236999999999999999999999999999999999999999999
Q ss_pred EEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCC
Q 001189 802 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 878 (1128)
Q Consensus 802 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g 878 (1128)
|.+||+|++.++++.+|++|+||||||.+|++||+|||.+.. ..++++++++++.++++++++++|.||||.+|++|
T Consensus 1090 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1090 VFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp EESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred EEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence 999999999999999999999999999999999999997654 35789999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEE
Q 001189 879 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 958 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~ 958 (1128)
.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||++|+|++
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEE
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhhcCCCchHHHHHhh
Q 001189 959 YDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 959 ~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
.|+|+||+++ ++.|++++...
T Consensus 1250 ~g~~~~l~~~-~g~y~~l~~~q 1270 (1284)
T 3g5u_A 1250 HGTHQQLLAQ-KGIYFSMVSVQ 1270 (1284)
T ss_dssp EECHHHHHHS-CSHHHHHHHHH
T ss_pred ECCHHHHHhC-CCHHHHHHHHH
Confidence 9999999987 46899888754
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.9e-73 Score=751.52 Aligned_cols=513 Identities=20% Similarity=0.278 Sum_probs=415.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHH
Q 001189 460 FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 539 (1128)
Q Consensus 460 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~ 539 (1128)
.+.+.|+.++++..++.++..+++.+.+.+...++|.+++++++++|+.||+++++|++++|+++|++.++..+...+..
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~ 216 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGM 216 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888889999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHH
Q 001189 540 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 619 (1128)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~ 619 (1128)
++..+..+++.++++++.++...++++.++++++++..++.+..+...+......+...+.+.|.++|+++||+|+++++
T Consensus 217 ~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 296 (1321)
T 4f4c_A 217 AFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRY 296 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHH
Confidence 88888777777777777666544444333333333334444444444444445556677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 001189 620 MADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI---WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLT 696 (1128)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 696 (1128)
+.+++.+..+...+..........+......++..+.. +..+...+ ..+..+ .+.+..++.++..+..++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v-~~g~lt-----~g~~~~~~~~~~~~~~~l~ 370 (1321)
T 4f4c_A 297 ELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWV-HDGSLN-----FGDMLTTFSSVMMGSMALG 370 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTSSC-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCc-----HHHHHHHHHHHHHHHHHHH
Confidence 88888777776665554443333332222222222111 11111222 223322 2233334455556666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEE
Q 001189 697 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVG 775 (1128)
Q Consensus 697 ~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ 775 (1128)
.+......+.....+++|+.++++.+++.+...+ ......+..|.|+|+||+|+|+.. .+++|+|+||+|+|||++|
T Consensus 371 ~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~--~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~va 448 (1321)
T 4f4c_A 371 LAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSK--AGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVA 448 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSS--CCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc--ccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEE
Confidence 7777778888899999999999987655332111 112233556889999999999642 3589999999999999999
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCC-CCHHHHHHHH
Q 001189 776 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEAL 854 (1128)
Q Consensus 776 ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~~~i~~~l 854 (1128)
||||||||||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||+|+||++||||||.++.+ .+++++++++
T Consensus 449 ivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~ 528 (1321)
T 4f4c_A 449 LVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAAC 528 (1321)
T ss_dssp EEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHH
T ss_pred EEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988764 6899999999
Q ss_pred HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEE
Q 001189 855 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 934 (1128)
Q Consensus 855 ~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~ 934 (1128)
+.|+++++++.+|.|+||.+||+|.+||||||||++||||++++|+|||||||||+||+++++.++++|++..+++|+|+
T Consensus 529 ~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~ii 608 (1321)
T 4f4c_A 529 KMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTII 608 (1321)
T ss_dssp HHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEE
T ss_pred HHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhhc
Q 001189 935 IAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 981 (1128)
Q Consensus 935 vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 981 (1128)
||||++++.+||+|+||++|+|+|.|+|+||+++ ++.|++++....
T Consensus 609 iaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 609 IAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp ECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred EcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 9999999999999999999999999999999986 468988887643
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.4e-72 Score=686.10 Aligned_cols=546 Identities=22% Similarity=0.329 Sum_probs=414.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 424 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG--PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 501 (1128)
Q Consensus 424 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 501 (1128)
++.+++.++...+....++++..+.+........ ...+..+++++.+...++.++..++....+.+...++|.+++++
T Consensus 26 ~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 105 (587)
T 3qf4_A 26 VLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRK 105 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566667777888888887764322111 11233344455566667778888888899999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 502 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581 (1128)
Q Consensus 502 ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 581 (1128)
+++.|+.||+++++|++++|+++|++.++..+...+..++..++.++..++++..+.+...++++.++++++.+..++.+
T Consensus 106 ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~ 185 (587)
T 3qf4_A 106 VLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTK 185 (587)
T ss_dssp HHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887776666666666666555555555443333333222222333333333
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 001189 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MIW 658 (1128)
Q Consensus 582 ~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~---~~~ 658 (1128)
..+...+......+.+.+.+.|.++|+++||+|++++.+.+++.+..+...+..........+......++..+ +++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 265 (587)
T 3qf4_A 186 KGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVL 265 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445567788899999999999999999998887777766655554433322222222222222111 111
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCC
Q 001189 659 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 738 (1128)
Q Consensus 659 ~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~ 738 (1128)
..+.+.+. .+..+ .+.+..++.+...+..++..+...+........+.+|+.++++.+++.+.. ..+.+.+
T Consensus 266 ~~g~~~v~-~g~lt-----~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~ 336 (587)
T 3qf4_A 266 WFGGVLVR-NNQME-----IGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA---DNALALP 336 (587)
T ss_dssp HHHHHHHH-TTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC---TTCBCCS
T ss_pred HHHHHHHH-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC---CCccccC
Confidence 11122222 22221 122333344445555566666667777788899999999999866543211 1111223
Q ss_pred CCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 739 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 739 p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
+..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|
T Consensus 337 ~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 337 NVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp CCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHH
T ss_pred CCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHH
Confidence 44678999999999976556899999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
++|+||||+|.+|++||+||+.+.. ..++++++++++.++++++++.+|.|+||.++++|.+||||||||++|||||++
T Consensus 417 ~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp HHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred hheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 9999999999999999999998765 467889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||++|++|+|++.|+|+|++++. +.|.+++
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~-~~~~~~~ 575 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHC-KPYREIY 575 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHC-HHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCC-cHHHHHH
Confidence 999999999999999999999999999988899999999999999999999999999999999999999764 4566665
Q ss_pred Hh
Q 001189 978 QS 979 (1128)
Q Consensus 978 ~~ 979 (1128)
..
T Consensus 576 ~~ 577 (587)
T 3qf4_A 576 ES 577 (587)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-71 Score=686.46 Aligned_cols=545 Identities=25% Similarity=0.361 Sum_probs=434.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 423 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH--GPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 500 (1128)
Q Consensus 423 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 500 (1128)
+++.+++.++...+....+++++.+.+....... ....+..+++++.++..++.+++.++....+.+...++|.++++
T Consensus 39 ~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 118 (598)
T 3qf4_B 39 LIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFE 118 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666777777777777765432111 12334556666677778888888999999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 501 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 580 (1128)
Q Consensus 501 ~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 580 (1128)
++++.|+.||+++++|++++|+++|++.++..+...+..++..+..++..++++....+...++++.++++++.+..++.
T Consensus 119 ~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~ 198 (598)
T 3qf4_B 119 KLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVS 198 (598)
T ss_dssp HHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877777777777777777777766666655554444444444555555
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001189 581 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW-- 658 (1128)
Q Consensus 581 ~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~-- 658 (1128)
+..++..+......+++.+.+.|.++|+++||+|++++++.+++.+..+...+..........+......++..+...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (598)
T 3qf4_B 199 SQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALI 278 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666677888999999999999999999999888887776666555444443333333333333222211
Q ss_pred -HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001189 659 -LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 737 (1128)
Q Consensus 659 -~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~ 737 (1128)
..+.+.+ ..+..+ .+.+..++.++..+..++..+...+........+++|+.++++.+++.+. ....+.
T Consensus 279 ~~~g~~l~-~~g~ls-----~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~~~ 348 (598)
T 3qf4_B 279 SGFGGWLA-LKDIIT-----VGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD----PDAVEL 348 (598)
T ss_dssp HHHHHHHG-GGTSSC-----HHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC----SSCCCC
T ss_pred HHHHHHHH-HcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCCCC
Confidence 1122222 222221 23344444555556677788888888889999999999999987765421 112223
Q ss_pred CCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh
Q 001189 738 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 738 ~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
++..+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+.+
T Consensus 349 ~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 349 REVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CCCCCeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHH
Confidence 4566789999999999754 479999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 818 RKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
|++|+||||+|.+|++||+||+.+.. ..++++++++++.++++++++++|.|++|.++++|.+||||||||++||||++
T Consensus 428 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp HHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998764 35778899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHH
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 976 (1128)
++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+|++.|+|+|++++. +.|+++
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~ 586 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKR-GFYYEL 586 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTT-CHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC-CHHHHH
Confidence 9999999999999999999999999999988899999999999999999999999999999999999999864 577776
Q ss_pred HHh
Q 001189 977 VQS 979 (1128)
Q Consensus 977 ~~~ 979 (1128)
+..
T Consensus 587 ~~~ 589 (598)
T 3qf4_B 587 FTS 589 (598)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=9.2e-70 Score=668.38 Aligned_cols=542 Identities=22% Similarity=0.333 Sum_probs=429.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCC-ChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPLFYN-TIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 503 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 503 (1128)
.+++.++...+....++++.++.+....... ....+. .+++++.++..++.++..++....+.+...+++.+++++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 109 (582)
T 3b5x_A 30 STIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFM 109 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666667777766654321111 112222 22455556677777888888889999999999999999999
Q ss_pred cCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 504 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 583 (1128)
Q Consensus 504 ~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 583 (1128)
+.|+.||+++++|++++|+++|++.++..+...+..++..++.++..++++..+++...++++.++++++.+..++.+..
T Consensus 110 ~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 189 (582)
T 3b5x_A 110 HMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRF 189 (582)
T ss_pred cCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988777777777777777766666666666655544444444444444555555
Q ss_pred HHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001189 584 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLT--- 660 (1128)
Q Consensus 584 ~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~--- 660 (1128)
++..+......+.+.+.+.|.++|+++||+|+.++++.+++.+..+...+..........|......++..+...++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (582)
T 3b5x_A 190 RKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFL 269 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556677888899999999999999999999998888888777776666655555565555544433322221
Q ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCC
Q 001189 661 ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS 740 (1128)
Q Consensus 661 ~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~ 740 (1128)
+.+.+. .+..+ .+.+..++.++..+..++..+...+........+++|+.++++.+++.+. . +.+.++.
T Consensus 270 g~~~v~-~g~lt-----~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~--~~~~~~~ 338 (582)
T 3b5x_A 270 ASVDSI-RAELT-----PGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN---G--KYEAERV 338 (582)
T ss_pred HHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC---C--CCCCCCC
Confidence 222222 22221 23444455566667777888888888889999999999999986654321 1 1112334
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
.+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+.+...+|++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 56799999999997533579999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCccccccHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||||+|.+|++|++||+.+.. ..++++++++++.++++++++++|.|+||.++++|.+||||||||++||||++++
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~ 498 (582)
T 3b5x_A 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD 498 (582)
T ss_pred eEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999998764 4578899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||||++|++|++++.|+|+|++++. +.|+++++
T Consensus 499 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~ 577 (582)
T 3b5x_A 499 APVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD-GAYAQLHR 577 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC-cHHHHHHH
Confidence 99999999999999999999999999987899999999999999899999999999999999999999764 56776665
Q ss_pred h
Q 001189 979 S 979 (1128)
Q Consensus 979 ~ 979 (1128)
.
T Consensus 578 ~ 578 (582)
T 3b5x_A 578 I 578 (582)
T ss_pred H
Confidence 3
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7e-70 Score=669.44 Aligned_cols=545 Identities=22% Similarity=0.302 Sum_probs=433.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 424 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-PLFYN-TIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 501 (1128)
Q Consensus 424 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 501 (1128)
++.+++.++...+....++++..+.+........ ...+. .+++++.++..++.+++.++....+.+...+++.+++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (582)
T 3b60_A 28 IVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGH 107 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555666667777777777654321111 11121 224455566677778888888899999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 502 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 581 (1128)
Q Consensus 502 ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 581 (1128)
+++.|+.||+++++|++++|+++|++.++..+...+..++..++.++..++++..+++...++++.++++++.+..++.+
T Consensus 108 l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 187 (582)
T 3b60_A 108 MMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 187 (582)
T ss_dssp HHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887777777777777766666666666655444443333333444444555
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 582 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTA 661 (1128)
Q Consensus 582 ~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~ 661 (1128)
..++..+......+++.+.+.|.++|+++||+|+.++++.+++.+..+...+..........|......++..+...++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (582)
T 3b60_A 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVL 267 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566778888999999999999999999999998888888877777666666666666665555444333322
Q ss_pred HHHHH--hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCC
Q 001189 662 TFAVV--QNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 739 (1128)
Q Consensus 662 ~~~v~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 739 (1128)
.+... ..+.. ..+.+..++.++..+..++..+...+........+++|+.++++.+++.+. . +.+.++
T Consensus 268 ~~g~~~v~~g~l-----t~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~--~~~~~~ 337 (582)
T 3b60_A 268 YAASFPSVMDSL-----TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE---G--KRVIDR 337 (582)
T ss_dssp HHHHSSSTTSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC---C--CBCCSC
T ss_pred HHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC---C--CCCCCC
Confidence 22211 11211 233444455566667777888888888889999999999999987655321 1 111233
Q ss_pred CCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh
Q 001189 740 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 819 (1128)
Q Consensus 740 ~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 819 (1128)
..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++...+|+
T Consensus 338 ~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 338 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHh
Confidence 45779999999999743247999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCccccccHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 820 ILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|+||||+|.+|++|++||+.+.. ..++++++++++.++++++++++|.|+||.++++|.+||||||||++||||+++
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~ 497 (582)
T 3b60_A 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred hCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998754 457889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||||++|++|++++.|+|+|++++. +.|++++
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~ 576 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH-GVYAQLH 576 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHT-SSHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcC-CHHHHHH
Confidence 999999999999999999999999999987899999999999999899999999999999999999999764 5677766
Q ss_pred Hh
Q 001189 978 QS 979 (1128)
Q Consensus 978 ~~ 979 (1128)
+.
T Consensus 577 ~~ 578 (582)
T 3b60_A 577 KM 578 (582)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 8
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.6e-70 Score=672.30 Aligned_cols=504 Identities=22% Similarity=0.347 Sum_probs=394.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHH
Q 001189 465 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 544 (1128)
Q Consensus 465 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~ 544 (1128)
+.++.++..++.+++.++....+.+...+++.++++++++.|+.||+++++|++++|+++|++.++..+...+..++..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~ 146 (578)
T 4a82_A 67 LFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDC 146 (578)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667778888888999999999999999999999999999999999999999999999876554344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHH
Q 001189 545 SQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 624 (1128)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~ 624 (1128)
..++..++++....+...++.+.++++++.+..++.+..++..+......++..+.+.|.++|+++||+|++++.+.+++
T Consensus 147 ~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 226 (578)
T 4a82_A 147 ITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNF 226 (578)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHH
Confidence 44455555555554443333333333333334444455555555556667788899999999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 625 GKSMDKNIRYTLVNMGANRWLAIRLEIVG---GLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 701 (1128)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~wl~~~l~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 701 (1128)
.+..+...+..........+.......+. .++++..+.+.+.. +..+ .+.+..++.++..+..++..+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~-g~lt-----~g~l~~~~~~~~~~~~~l~~l~~~ 300 (578)
T 4a82_A 227 DKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAIS-GSIT-----VGTLAAFVGYLELLFGPLRRLVAS 300 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSCC-----HHHHHHHHHTHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcC-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666555444333222222222222221 11222222222222 2221 233344455566666777778888
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCC
Q 001189 702 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTG 781 (1128)
Q Consensus 702 ~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~G 781 (1128)
+........+++|+.++++.+++.+.. ..+.+.++..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||
T Consensus 301 ~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sG 377 (578)
T 4a82_A 301 FTTLTQSFASMDRVFQLIDEDYDIKNG---VGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSG 377 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSSCCC---TTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccCC---CCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCC
Confidence 888889999999999999876553211 11122234567899999999997655689999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHH
Q 001189 782 AGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLK 860 (1128)
Q Consensus 782 sGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~ 860 (1128)
||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||+|.+|++||+||+.+.. ..++++++++++.++++
T Consensus 378 sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 457 (578)
T 4a82_A 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAH 457 (578)
T ss_dssp SSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999998754 45788999999999999
Q ss_pred HHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCch
Q 001189 861 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 940 (1128)
Q Consensus 861 ~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~ 940 (1128)
++++++|.|+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|++..+++|+|+||||++
T Consensus 458 ~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 537 (578)
T 4a82_A 458 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537 (578)
T ss_dssp HHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred HHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred hhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 941 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 941 ~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
++..||||++|++|++++.|+|+|++++. +.|.+++.
T Consensus 538 ~~~~~d~i~~l~~G~i~~~g~~~el~~~~-~~~~~~~~ 574 (578)
T 4a82_A 538 TITHADKIVVIENGHIVETGTHRELIAKQ-GAYEHLYS 574 (578)
T ss_dssp GTTTCSEEEEEETTEEEEEECHHHHHHTT-SHHHHHHT
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhCC-cHHHHHHH
Confidence 99999999999999999999999999864 56766654
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2e-69 Score=667.02 Aligned_cols=545 Identities=23% Similarity=0.312 Sum_probs=409.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCC--C---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 426 LLLCYFLTETLRVSSSTWLSYWTDQSSLKT--H---GPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 500 (1128)
Q Consensus 426 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~--~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 500 (1128)
.+++.++...+....++++..+.+...... . ....+..+++++.++..++.+++.++....+.+...+++.++++
T Consensus 24 ~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 103 (595)
T 2yl4_A 24 AVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFS 103 (595)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556666666655321111 0 11122333444555566777788888888999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001189 501 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 580 (1128)
Q Consensus 501 ~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 580 (1128)
++++.|+.||+++++|++++|+++|++.++..+...+..++..+..++..++++..+.+...++++..+++++++..++.
T Consensus 104 ~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~ 183 (595)
T 2yl4_A 104 SILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 183 (595)
T ss_dssp HHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988777777777776666666666666665544433333333333333444
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001189 581 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI--- 657 (1128)
Q Consensus 581 ~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~--- 657 (1128)
+..++..+......+.+.+.+.|.++|+++||+|+.++++.+++.+..+...+..........|......++..+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (595)
T 2yl4_A 184 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSV 263 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555677889999999999999999999988888877777666655544444454444443332222
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCC
Q 001189 658 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 737 (1128)
Q Consensus 658 ~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~ 737 (1128)
++.+.+.+. .+..+ .+.+..++.++..+..++..+...+........+++|+.++++.+++.+.. ... .+.
T Consensus 264 ~~~g~~~v~-~g~lt-----~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--~~~-~~~ 334 (595)
T 2yl4_A 264 LYKGGLLMG-SAHMT-----VGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN--EGV-ILN 334 (595)
T ss_dssp HHHHHHHHH-TTSCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS--CSB-CCC
T ss_pred HHHHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC--CCC-CCC
Confidence 112222222 22222 233444455566677777788888888888999999999999876543211 111 111
Q ss_pred CCCCcc-EEEEEEEEEeCCC-CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001189 738 WPSSGS-IKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 815 (1128)
Q Consensus 738 ~p~~g~-i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~ 815 (1128)
.+..+. |+++||+|+|+++ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++++
T Consensus 335 ~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~ 414 (595)
T 2yl4_A 335 EKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPV 414 (595)
T ss_dssp TTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHH
T ss_pred cCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHH
Confidence 233567 9999999999643 24699999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhceEEEcCCCccccccHhhccccCCC----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~----~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
.+|++|+||||+|.+|++||+||+.+... .++++++++++.++++++++++|.|+||.++++|.+||||||||++|
T Consensus 415 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~i 494 (595)
T 2yl4_A 415 WLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAI 494 (595)
T ss_dssp HHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHH
T ss_pred HHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHH
Confidence 99999999999999999999999976533 57889999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||||++|++|++++.|+|+|++++.++
T Consensus 495 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 574 (595)
T 2yl4_A 495 ARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNG 574 (595)
T ss_dssp HHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C
T ss_pred HHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCh
Confidence 99999999999999999999999999999999998789999999999999988999999999999999999999976556
Q ss_pred chHHHHHh
Q 001189 972 SFSKMVQS 979 (1128)
Q Consensus 972 ~~~~~~~~ 979 (1128)
.|.+++..
T Consensus 575 ~~~~~~~~ 582 (595)
T 2yl4_A 575 IYRKLMNK 582 (595)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 77776654
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.2e-69 Score=712.25 Aligned_cols=510 Identities=21% Similarity=0.318 Sum_probs=406.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHhhchhhhhhhhHHHHHH
Q 001189 460 FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 539 (1128)
Q Consensus 460 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnr~s~D~~~id~~l~~~~~~ 539 (1128)
.|..+|++++++..++.+++.+++...+.+...++|.+++++++++|+.||+++++|++++|+++|++.++..++..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888899999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHcchHHHHHhhHHHH
Q 001189 540 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 619 (1128)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~l~g~~tIra~~~~~~ 619 (1128)
++..+..+++.++++++.++...+++++++++++....++.+..++..+......++..+++.|+++|+++||+|+.+++
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~ 268 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHH
Confidence 88887777777777666665444444444444444444555555555555666677888899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 001189 620 MADINGKSMDKNIRYTLVNMGANRWLAIRLEI----VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLL 695 (1128)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 695 (1128)
+.+++.+..+...+..........+......+ ...+++|+++.+......+.+. .+ .++.+......++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~--~~-----~~~~~~~~~~~~~ 341 (1284)
T 3g5u_A 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQ--VL-----TVFFSVLIGAFSV 341 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSC--HH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH--HH-----HHHHHHHHHHHHH
Confidence 88888777776665544322222222211111 2222333333322221111111 11 1112222333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCC-CCCceeeeeEEEcCCcEE
Q 001189 696 TAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKV 774 (1128)
Q Consensus 696 ~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~-~~~~l~~vsl~i~~Ge~v 774 (1128)
..+...+........+++|+.++++.+++.+...+...++ .+..|.|+++||+|+|+++ .+++|+|+||+|+|||++
T Consensus 342 ~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~--~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~ 419 (1284)
T 3g5u_A 342 GQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKP--DNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTV 419 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCC--TTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCC--CCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEE
Confidence 5566666777888899999999987665432211111111 2346789999999999753 347999999999999999
Q ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHH
Q 001189 775 GIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEA 853 (1128)
Q Consensus 775 ~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~ 853 (1128)
|||||||||||||+++|+|+++|++|+|.+||+|++.++++++|++|+||||+|.+|++||+|||.+.. ..++++++++
T Consensus 420 ~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~ 499 (1284)
T 3g5u_A 420 ALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKA 499 (1284)
T ss_dssp EEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998654 4688999999
Q ss_pred HHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEE
Q 001189 854 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 933 (1128)
Q Consensus 854 l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi 933 (1128)
++.++++++++++|.|+||.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+++.|+...+++|+|
T Consensus 500 ~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i 579 (1284)
T 3g5u_A 500 VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTI 579 (1284)
T ss_dssp HHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHh
Q 001189 934 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 979 (1128)
Q Consensus 934 ~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 979 (1128)
+||||++++.+||+|+||++|+|++.|+|+||+++. +.|.+++..
T Consensus 580 ~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~-~~~~~~~~~ 624 (1284)
T 3g5u_A 580 VIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK-GIYFKLVMT 624 (1284)
T ss_dssp EECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTT-SHHHHHHHH
T ss_pred EEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC-CHHHHHHHH
Confidence 999999999999999999999999999999999864 567777654
No 11
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=7e-63 Score=620.67 Aligned_cols=195 Identities=18% Similarity=0.240 Sum_probs=156.3
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhc-CCCCCCCCceeecCcEEEEecCC-CC
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGTVAYVPQVS-WI 195 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G-~~~~~~g~~~~~~~~i~~v~Q~~-~l 195 (1128)
..+...|++++|+. +++|+|+||++++|++++|+||||||||||+++|+| .+. |.......+++|++|++ .+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~---g~~~~~~~~~~~v~q~~~~~ 507 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD---GFPTQEECRTVYVEHDIDGT 507 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCST---TCCCTTTSCEEETTCCCCCC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCccccceeEEEEccccccc
Confidence 35777899999963 579999999999999999999999999999999994 331 11110112478999985 33
Q ss_pred -CcccHHHHHhcCCCCCHHHHHHHHHHhCcH-HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 001189 196 -FNATVRDNILFGSAFEPARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273 (1128)
Q Consensus 196 -~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~-~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt 273 (1128)
...||.||+.+......+++.++++..++. +..+.. ..+||||||||++|||||+.+|++|||||||
T Consensus 508 ~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~-----------~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 508 HSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMP-----------ISALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp CTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSB-----------GGGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred ccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCC-----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 467999999862110156777888888884 344332 2579999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEe-eecChhHHh
Q 001189 274 SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK-EEGTFEDLS 332 (1128)
Q Consensus 274 s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 332 (1128)
++||+.+.+++++.+.. .|+|+|+|||+++++.. ||+|++|++|+++ +.|+++++.
T Consensus 577 s~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 577 NHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp TTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred cCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 99999999999986544 58999999999999875 8999999999997 578877654
No 12
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.1e-64 Score=614.68 Aligned_cols=198 Identities=25% Similarity=0.328 Sum_probs=165.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.+|+
T Consensus 357 ~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~ 420 (607)
T 3bk7_A 357 LVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVA 420 (607)
T ss_dssp EEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEE
T ss_pred EEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEE
Confidence 5899999999963 3799999999999999999999999999999999999999999975 24699
Q ss_pred EEcCCCcc-ccccHhhccccC-C-CC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVL-FSGTVRFNLDPF-S-EH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~l-f~~Tv~~nl~~~-~-~~-~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++.+ +..||.+|+... . .. ..+.+.++++.. |++........+||||||||++|||||+++
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-----------GIIDLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999876 456999887532 0 00 112233333332 343334444568999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~--G~i~~~g~~~~l~~ 967 (1128)
|+||||||||++||+.+...+.+.|+++. .++|||+|||+++++.. ||||++|++ |++.+.|+|++++.
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999999864 48999999999999987 999999986 88888999998875
No 13
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.4e-64 Score=608.85 Aligned_cols=198 Identities=24% Similarity=0.330 Sum_probs=164.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..|+
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEE
Confidence 4899999999953 4799999999999999999999999999999999999999999975 23699
Q ss_pred EEcCCCcc-ccccHhhccccC-C-C-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSPVL-FSGTVRFNLDPF-S-E-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~~l-f~~Tv~~nl~~~-~-~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||++.. +..||.+|+... . . ...+.+. +.++. .|+.........+||||||||++|||||+.+
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~---------~~l~~--~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDASKLNSNFYKT---------ELLKP--LGIIDLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHH---------HTTTT--TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEecCCcCCCCCcHHHHHHhhhccCCCHHHHHH---------HHHHH--cCChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999976 456998887532 0 0 0111222 22222 3454445555678999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~--G~i~~~g~~~~l~~ 967 (1128)
|+||||||||++||+.+...|++.|+++. .++|||+|||+++++.. ||||++|++ |++++.|+|++++.
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999864 38999999999999987 999999986 78888999988764
No 14
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.3e-61 Score=580.88 Aligned_cols=198 Identities=22% Similarity=0.317 Sum_probs=163.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++| ..++
T Consensus 269 ~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~ 333 (538)
T 3ozx_A 269 KMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILS 333 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEE
T ss_pred eEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeE
Confidence 4889999999964 468889999999999999999999999999999999999999999775 3589
Q ss_pred EEcCCCcc-ccccHhhccccCC-C---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 823 IIPQSPVL-FSGTVRFNLDPFS-E---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 823 ~v~Q~~~l-f~~Tv~~nl~~~~-~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|+||++.. +..||++|+.... . .....+.++++..+ +.........+||||||||++|||||+.
T Consensus 334 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 334 YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN-----------LHRLLESNVNDLSGGELQKLYIAATLAK 402 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT-----------GGGCTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred eechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC-----------CHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999864 4679999985321 1 11223344444444 3333444556899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC--CEEEEecChhHHh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELL 966 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~--G~i~~~g~~~~l~ 966 (1128)
+|+||||||||++||+.+...+++.|+++. .++|||+||||++++.. ||||+||++ |.+...++|.++.
T Consensus 403 ~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999999999999999999864 47899999999999987 999999986 5666677777654
No 15
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=6.3e-61 Score=599.59 Aligned_cols=195 Identities=25% Similarity=0.305 Sum_probs=125.1
Q ss_pred CCCceeeeeEEeeCCCEEEEEcCCCccHHHHH---------------------HHHhcCCCCCCCCc------ee-----
Q 001189 134 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI---------------------SAMLGELPPVSDAS------AV----- 181 (1128)
Q Consensus 134 ~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl---------------------~~l~G~~~~~~g~~------~~----- 181 (1128)
.+.+|+||||+|++|++++|+||||||||||+ +++.|+..|+.|.. +.
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35799999999999999999999999999998 78888877764311 11
Q ss_pred ----ecCcEEEEecCCCC--------------------CcccHHHHHhcCCCCC--H--HHH-----HHHHHHhCcHHHH
Q 001189 182 ----IRGTVAYVPQVSWI--------------------FNATVRDNILFGSAFE--P--ARY-----EKAIDVTSLQHDL 228 (1128)
Q Consensus 182 ----~~~~i~~v~Q~~~l--------------------~~~Tv~eni~~g~~~~--~--~~~-----~~~~~~~~l~~~~ 228 (1128)
.+..+++++|.+.+ ...||+||+.+..... . .+. .++.+..+ .+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l 186 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG---FL 186 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHH---HH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH---HH
Confidence 12235555554332 2469999998742211 0 000 01111111 12
Q ss_pred hcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCcc
Q 001189 229 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 306 (1128)
Q Consensus 229 ~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~--illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~ 306 (1128)
+.+.-.+ ........+|||||||||+|||||+.+|+ +||||||||+||+...+++++.+.....+|.|+|+|||+++
T Consensus 187 ~~~gL~~-~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 187 QNVGLDY-LTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp HHTTCTT-CCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred HHcCCch-hhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 2111000 01233456899999999999999999998 99999999999999999999866554456899999999999
Q ss_pred chhcCCEEEEE------eCCeEeeecChhHHh
Q 001189 307 FLSQVDRIILV------HEGMVKEEGTFEDLS 332 (1128)
Q Consensus 307 ~l~~~d~i~~l------~~G~i~~~g~~~~l~ 332 (1128)
++..||+|++| ++|++++.|+++++.
T Consensus 266 ~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 266 TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 98889999999 889999998877653
No 16
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-60 Score=576.67 Aligned_cols=197 Identities=19% Similarity=0.295 Sum_probs=160.6
Q ss_pred EEEEEEeCCCCCCceeeeeEEEcCC-----cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 747 EDVVLRYRPELPPVLHGLSFTIPPS-----DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 747 ~~v~~~y~~~~~~~l~~vsl~i~~G-----e~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
++++++|+.. ..+++++||++.+| |++||+||||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 4566777532 35789999999999 8899999999999999999999999999962 11 3469
Q ss_pred EEEcCCCc-cccccHhhcccc--CCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 822 GIIPQSPV-LFSGTVRFNLDP--FSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 822 ~~v~Q~~~-lf~~Tv~~nl~~--~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|+||++. .|..|+++|+.. ... .......++++..++ .........+||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l-----------~~~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI-----------DDIIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS-----------TTTSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999975 467799998742 111 223344445554443 333444556899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeC--CEEEEecChhHHhhc
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELLSN 968 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~--G~i~~~g~~~~l~~~ 968 (1128)
+|+||||||||++||+.+...+.+.|+++. .++|||+|||+++++.. ||||++|++ |+++..|+|++++..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999999864 48999999999999987 999999986 999999999999864
No 17
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.3e-57 Score=506.20 Aligned_cols=270 Identities=31% Similarity=0.496 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHH
Q 001189 706 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS 785 (1128)
Q Consensus 706 e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKS 785 (1128)
+..+.+++|+.++++.+++.... ....+.++..+.|+++||+|+|+++ .++|+||||+|++||++|||||||||||
T Consensus 19 ~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKS 94 (306)
T 3nh6_A 19 SHMFIDMENMFDLLKEETEVKDL---PGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKS 94 (306)
T ss_dssp CCTTCCHHHHHHHHHHHHSCCCC---TTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccc---ccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHH
Confidence 34456778888777543332110 1111122345789999999999643 4799999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHH
Q 001189 786 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIR 864 (1128)
Q Consensus 786 Tll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~ 864 (1128)
||+++|+|+++|++|+|.+||.|+..++...+|++|+||||+|.+|++||++||.+.. ..++++++++++.+++.+++.
T Consensus 95 TLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~ 174 (306)
T 3nh6_A 95 TILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIM 174 (306)
T ss_dssp HHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998764 357889999999999999999
Q ss_pred HccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh
Q 001189 865 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 944 (1128)
Q Consensus 865 ~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~ 944 (1128)
.+|.||+|.+++.|.+|||||||||+|||||+++|+|||||||||+||+.+++.|++.|++..+++|+|+||||++++..
T Consensus 175 ~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~ 254 (306)
T 3nh6_A 175 AFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254 (306)
T ss_dssp HSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT
T ss_pred hccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhhcCCCchHHHHHhh
Q 001189 945 CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 980 (1128)
Q Consensus 945 ~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 980 (1128)
||||++|++|+|++.|+|++|+++. +.|+.++...
T Consensus 255 aD~i~vl~~G~iv~~G~~~el~~~~-~~y~~l~~~q 289 (306)
T 3nh6_A 255 ADQILVIKDGCIVERGRHEALLSRG-GVYADMWQLQ 289 (306)
T ss_dssp CSEEEEEETTEEEEEECHHHHHHHT-SHHHHHHHHH
T ss_pred CCEEEEEECCEEEEECCHHHHHhcC-hHHHHHHHHH
Confidence 9999999999999999999999864 5787777643
No 18
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=6.6e-53 Score=517.81 Aligned_cols=300 Identities=28% Similarity=0.419 Sum_probs=264.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--CCCCCCCc
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGLPA 119 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~~~ 119 (1128)
++++++|++.+..|.++++.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++...+.. +..+....
T Consensus 260 ~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 339 (578)
T 4a82_A 260 IIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGR 339 (578)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCe
Confidence 3456778888889999999999999999999999999999999999999999999999987654322111 11122346
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|++|+|++ +++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++++||
T Consensus 340 i~~~~v~~~y~~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~ 418 (578)
T 4a82_A 340 IDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 418 (578)
T ss_dssp EEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred EEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 999999999974 3468999999999999999999999999999999999999999875422 234699
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 188 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
||||+|++|++||+|||.+|.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+|||||+++|++
T Consensus 419 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~i 498 (578)
T 4a82_A 419 LVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI 498 (578)
T ss_dssp EECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE
T ss_pred EEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999999999999999864 467888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
+|||||||+||+++++.+.+.+ +...+++|+|+||||++.+..||+|++|++|+++++|+++|+.+.++.|.+++.
T Consensus 499 lllDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~ 574 (578)
T 4a82_A 499 LILDEATSALDLESESIIQEAL-DVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 574 (578)
T ss_dssp EEEESTTTTCCHHHHHHHHHHH-HHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHT
T ss_pred EEEECccccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 9999999999999999888754 444568999999999999999999999999999999999999988888877764
No 19
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-52 Score=515.03 Aligned_cols=302 Identities=27% Similarity=0.441 Sum_probs=267.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--CCCCCCC
Q 001189 41 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGLP 118 (1128)
Q Consensus 41 ~~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~~ 118 (1128)
.++++++|++.+..|.++++.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++...+.. +.++...
T Consensus 261 ~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 340 (587)
T 3qf4_A 261 MIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEG 340 (587)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCC
Confidence 34566788888899999999999999999999999999999999999999999999999987653222111 1112234
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++|++|+|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. ++++|
T Consensus 341 ~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 341 SVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred cEEEEEEEEEcCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 6999999999974 3468999999999999999999999999999999999999999875432 35579
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+|||||+++|+
T Consensus 420 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ 499 (587)
T 3qf4_A 420 SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499 (587)
T ss_dssp EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCS
T ss_pred EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999864 56788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
|||||||||+||+++++.+++.+.+ ..+|+|+|+||||++.+..||+|++|++|+++++|+++|+.++++.|++++..
T Consensus 500 illlDEpts~LD~~~~~~i~~~l~~-~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 577 (587)
T 3qf4_A 500 VLILDDCTSSVDPITEKRILDGLKR-YTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYES 577 (587)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHH-HSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHH-hCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence 9999999999999999999986543 45789999999999999999999999999999999999999888888877754
No 20
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.6e-52 Score=509.65 Aligned_cols=300 Identities=25% Similarity=0.375 Sum_probs=265.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
.++++|++.+..|.++++.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++......+..+....|++
T Consensus 265 ~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 344 (582)
T 3b5x_A 265 AVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDV 344 (582)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEE
Confidence 35667888888999999999999999999999999999999999999999999999998765422111111112346999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|+++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++++|||||
T Consensus 345 ~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 423 (582)
T 3b5x_A 345 KDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVS 423 (582)
T ss_pred EEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEc
Confidence 9999999742 367999999999999999999999999999999999999999875422 345799999
Q ss_pred cCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 191 QVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
|+|++|++||+|||.++. ..+++++.++++.+++.+.++.+|+|++|.+|++|.+||||||||++|||||+++|+++|
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~ill 503 (582)
T 3b5x_A 424 QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI 503 (582)
T ss_pred CCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999986 456788999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
||||||+||+++++.+.+.+.+ ..+|+|+|+||||++.++.||+|++|++|++++.|+++++.+.++.|.+++..
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~-~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 578 (582)
T 3b5x_A 504 LDEATSALDTESERAIQAALDE-LQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRI 578 (582)
T ss_pred EECccccCCHHHHHHHHHHHHH-HcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence 9999999999999999886544 34589999999999999999999999999999999999999888888887654
No 21
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.9e-52 Score=508.96 Aligned_cols=300 Identities=28% Similarity=0.392 Sum_probs=263.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEE
Q 001189 43 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 122 (1128)
Q Consensus 43 ~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 122 (1128)
.++++|++.+..|.++++.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++......+..+....|++
T Consensus 265 ~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 344 (582)
T 3b60_A 265 FVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEF 344 (582)
T ss_dssp HHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEE
Confidence 34567777788899999999999999999999999999999999999999999999998765422111111122346999
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEe
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 190 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 190 (1128)
+|++|+|+++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++++|+|||
T Consensus 345 ~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 423 (582)
T 3b60_A 345 RNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS 423 (582)
T ss_dssp EEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEEC
T ss_pred EEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEc
Confidence 9999999732 267999999999999999999999999999999999999999875421 234699999
Q ss_pred cCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 001189 191 QVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 268 (1128)
Q Consensus 191 Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ill 268 (1128)
|+|++|++||+|||.++. ..+++++.++++.+++.+.++.+|+|++|.+|++|.+|||||||||+|||||+++|+++|
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 424 QNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp SSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999986 457788999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHH
Q 001189 269 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 344 (1128)
Q Consensus 269 LDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 344 (1128)
||||||+||+++++.+.+.+.+ ..+|+|+|+||||++.++.||+|++|++|++++.|+++++.+.++.|.+++..
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~-~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 578 (582)
T 3b60_A 504 LDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM 578 (582)
T ss_dssp EETTTSSCCHHHHHHHHHHHHH-HHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHH-HhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHH
Confidence 9999999999999999886544 34589999999999999999999999999999999999999887778877653
No 22
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-52 Score=516.46 Aligned_cols=301 Identities=26% Similarity=0.409 Sum_probs=266.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC-CCCCCCCcE
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-PLTSGLPAI 120 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~-~~~~~~~~i 120 (1128)
++++++|++.+..|.++++.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++...+.. +..+....|
T Consensus 276 ~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i 355 (598)
T 3qf4_B 276 ALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEI 355 (598)
T ss_dssp HHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeE
Confidence 3456778888889999999999999999999999999999999999999999999999987664322111 111223469
Q ss_pred EEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEE
Q 001189 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 188 (1128)
Q Consensus 121 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 188 (1128)
+++|++|+|++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++++|+|
T Consensus 356 ~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 433 (598)
T 3qf4_B 356 EFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433 (598)
T ss_dssp EEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence 99999999973 367999999999999999999999999999999999999999875432 2446999
Q ss_pred EecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 001189 189 VPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267 (1128)
Q Consensus 189 v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~il 267 (1128)
|||+|++|++||+|||.+|.+ .+++++.++++.++++++++.+|+|++|.+|++|.+|||||||||+|||||+++|++|
T Consensus 434 v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~il 513 (598)
T 3qf4_B 434 VLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKIL 513 (598)
T ss_dssp ECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEE
T ss_pred EeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999864 5667888999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHh
Q 001189 268 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345 (1128)
Q Consensus 268 lLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 345 (1128)
|||||||+||+++++.+.+.+.+ ..+|+|+|+||||++.+..||+|++|++|+++++|+++++.++++.|.+++..+
T Consensus 514 llDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 590 (598)
T 3qf4_B 514 ILDEATSNVDTKTEKSIQAAMWK-LMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590 (598)
T ss_dssp EECCCCTTCCHHHHHHHHHHHHH-HHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHH
T ss_pred EEECCccCCCHHHHHHHHHHHHH-HcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999876544 346899999999999999999999999999999999999999888888887643
No 23
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.5e-51 Score=503.57 Aligned_cols=301 Identities=25% Similarity=0.418 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--CCCCCCCCc
Q 001189 42 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN--PPLTSGLPA 119 (1128)
Q Consensus 42 ~~~~~~~~~~~~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~--~~~~~~~~~ 119 (1128)
+.++++|++.+..|.++++.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++...+. ++..+....
T Consensus 261 ~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 340 (595)
T 2yl4_A 261 LSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQG 340 (595)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCC
Confidence 345677888888999999999999999999999999999999999999999999999998765322111 111112245
Q ss_pred -EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 120 -ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 120 -i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
|+++|++|+|++++++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++++|
T Consensus 341 ~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i 420 (595)
T 2yl4_A 341 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKI 420 (595)
T ss_dssp CEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSE
T ss_pred eEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhce
Confidence 99999999997433357999999999999999999999999999999999999999875421 23469
Q ss_pred EEEecCCCCCcccHHHHHhcCCC----CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 262 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~----~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~ 262 (1128)
+||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+|||||++
T Consensus 421 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~ 500 (595)
T 2yl4_A 421 GTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500 (595)
T ss_dssp EEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999864 46788999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc-chHHHHH
Q 001189 263 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKL 341 (1128)
Q Consensus 263 ~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 341 (1128)
+|+++|||||||+||+++++.+.+.+.+ ..+++|+|+||||++.++.||+|++|++|++++.|+++++.++ ++.|.++
T Consensus 501 ~p~illlDEpts~LD~~~~~~i~~~l~~-~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 579 (595)
T 2yl4_A 501 NPKILLLDEATSALDAENEYLVQEALDR-LMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKL 579 (595)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHHHHHH-HHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C-----
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHH
Confidence 9999999999999999999999886544 3358999999999999999999999999999999999999874 6667666
Q ss_pred HH
Q 001189 342 ME 343 (1128)
Q Consensus 342 ~~ 343 (1128)
+.
T Consensus 580 ~~ 581 (595)
T 2yl4_A 580 MN 581 (595)
T ss_dssp --
T ss_pred HH
Confidence 54
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.1e-50 Score=442.30 Aligned_cols=237 Identities=34% Similarity=0.551 Sum_probs=217.7
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++||+++|+++..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 35999999999942224799999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
+|+||+|.+|..||++|+.+.. ...++++.++++.+++.++++++|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999899999998753 345678889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHHH
Q 001189 901 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 978 (1128)
Q Consensus 901 iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 978 (1128)
||||||||++||+.+++.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++++.+.+.|.+++.
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 999999999999999999999999876789999999999998889999999999999999999998764556665543
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.5e-51 Score=459.60 Aligned_cols=260 Identities=25% Similarity=0.454 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCC--CCCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCcc
Q 001189 83 ITQVVNANVSLKRMEEFLLAEEKILLPN--PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 160 (1128)
Q Consensus 83 ~~~~~~~~~s~~Ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsG 160 (1128)
...++.+.++++|+.++++.+++..... .+.......|+++|++|+|+. ++++|+|+||+|++|++++|+||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCch
Confidence 3456778899999999998765322111 111122346999999999973 357999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCcee------------ecCcEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHH
Q 001189 161 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHD 227 (1128)
Q Consensus 161 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~ 227 (1128)
||||+++|+|+++|++|.+.. ++..||||||+|++|++||+|||.+|.. .+.+++.++++.+++.+.
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 999999999999999875432 2446999999999999999999999864 567889999999999999
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccc
Q 001189 228 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 307 (1128)
Q Consensus 228 ~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~ 307 (1128)
++.+|+|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.+++.+++.+.. ..+++|+|+||||++.
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~-l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH-HHTTSEEEEECCSHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH-HcCCCEEEEEEcChHH
Confidence 999999999999999999999999999999999999999999999999999999999886543 4468999999999999
Q ss_pred hhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHHHh
Q 001189 308 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 345 (1128)
Q Consensus 308 l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 345 (1128)
+..||+|++|++|+|++.|+++++++..+.|..++..+
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q 289 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQ 289 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999999888888887653
No 26
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-49 Score=459.30 Aligned_cols=240 Identities=35% Similarity=0.681 Sum_probs=224.5
Q ss_pred CCCCCCCccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001189 735 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 814 (1128)
Q Consensus 735 ~~~~p~~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~ 814 (1128)
+..||..+.|+++||+++|+....++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..+++
T Consensus 11 ~~~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 11 DDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITL 89 (390)
T ss_dssp -CCSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCH
T ss_pred CcCCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCCh
Confidence 45688888999999999996444579999999999999999999999999999999999998 89999999999999999
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
..+|+.|+||||++.+|..||++|+.++....+++++++++.+++.+++++.|.++++.+++.|.+||||||||++||||
T Consensus 90 ~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp HHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999998776677889999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchH
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 974 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~ 974 (1128)
|+++|+|||||||||+||+.++..+++.|++...++|+|+|||+++.+..||||++|++|+|++.|+|+++.+++...|.
T Consensus 170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~v 249 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHH
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHH
Confidence 99999999999999999999999999999987778999999999988888999999999999999999999988766554
Q ss_pred H
Q 001189 975 K 975 (1128)
Q Consensus 975 ~ 975 (1128)
.
T Consensus 250 a 250 (390)
T 3gd7_A 250 A 250 (390)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.8e-48 Score=430.24 Aligned_cols=234 Identities=34% Similarity=0.584 Sum_probs=213.3
Q ss_pred ccEEEEEEEEEeCCCC-CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 742 GSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~-~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
+.|+++||+++|+... +++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.++|.++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 3599999999996431 3699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred eEEEcCCCccccccHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
|+|+||+|.+|..|+++|+.+.. ...++++.++++.+++.+++..+|.++++.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999889999997643 23567788899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 900 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 900 ~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
+||||||||++||+.+++.+++.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++++.. +.|..++
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~ 251 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN-GEYAEMW 251 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHT-SHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcC-hHHHHHH
Confidence 9999999999999999999999999987789999999999998889999999999999999999998753 4455444
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.8e-48 Score=432.60 Aligned_cols=236 Identities=31% Similarity=0.483 Sum_probs=212.9
Q ss_pred ccEEEEEEEEEeCC-CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 742 GSIKFEDVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 742 g~i~~~~v~~~y~~-~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
+.|+++||+++|+. ...++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999964 12479999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEcCCCccccccHhhccccCCC-CCH-HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 821 LGIIPQSPVLFSGTVRFNLDPFSE-HSD-ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 821 i~~v~Q~~~lf~~Tv~~nl~~~~~-~~~-~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|+||||+|.+|..||+||+.+... ..+ +++.++++..++.++++.+|.|+++.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999998999999976432 233 567777888889999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHH
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 976 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 976 (1128)
|+||||||||++||+.+++.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++++.|+++++++.. +.|.++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~-~~~~~~ 253 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-GCYRSM 253 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHT-SHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCc-HHHHHH
Confidence 999999999999999999999999998754 79999999999998889999999999999999999998754 456655
Q ss_pred HH
Q 001189 977 VQ 978 (1128)
Q Consensus 977 ~~ 978 (1128)
+.
T Consensus 254 ~~ 255 (271)
T 2ixe_A 254 VE 255 (271)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-49 Score=432.93 Aligned_cols=224 Identities=34% Similarity=0.574 Sum_probs=208.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|+|
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999422 479999999999999999999999999999999999999999999999999988777778899999
Q ss_pred EcCCCccccccHhhccccC-C-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 824 IPQSPVLFSGTVRFNLDPF-S-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~-~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+||+|.+|..|+++|+.+. . ...++++.++++.+++.++++++|.|+++.+++.+.+||||||||++|||||+++|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999989999999875 2 3457788999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||||++||+.+++.+.+.|++..+++|||+|||+++.+..||||++|++|++++.|+++++++.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 9999999999999999999999987678999999999999878999999999999999999999764
No 30
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=9.2e-48 Score=480.45 Aligned_cols=212 Identities=22% Similarity=0.360 Sum_probs=156.3
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHH-HhcCC-------CC----------------
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT-LFRIV-------EL---------------- 797 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~-l~g~~-------~p---------------- 797 (1128)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |+|++ .|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 3599999976 26999999999999999999999999999996 76554 22
Q ss_pred --CCc-------eEEECCEecCCCCh----------HHhhhceEEEc---------CCCc--------------------
Q 001189 798 --ERG-------RILIDGFDIAKFGL----------MDLRKILGIIP---------QSPV-------------------- 829 (1128)
Q Consensus 798 --~~G-------~I~i~g~~i~~~~~----------~~~r~~i~~v~---------Q~~~-------------------- 829 (1128)
.+| .|.+||.++...+. +.+|+.++++| +...
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 466 68999988865432 23343333222 2110
Q ss_pred --------------------------ccc-ccHhhccc--------cCCCCCHHHHHHHHHHhcHHHHHHHccCCcch-h
Q 001189 830 --------------------------LFS-GTVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLGLDA-Q 873 (1128)
Q Consensus 830 --------------------------lf~-~Tv~~nl~--------~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt-~ 873 (1128)
.+. .+|.+|+. ++.... .+ ....+.++.+ |+.. .
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~--~~------~~~~~~L~~~--gL~~~~ 723 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADES--AI------FRALDTLREV--GLGYLR 723 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSH--HH------HHHHHHHHHT--TCTTSB
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcch--HH------HHHHHHHHHc--CCCccc
Confidence 011 14444432 111110 00 1123445554 4444 3
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccC---CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEE
Q 001189 874 VSEAGENFSVGQRQLLSLSRALLRR---SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRIL 949 (1128)
Q Consensus 874 v~e~g~~LSgGqrqrl~lArall~~---p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~ 949 (1128)
.+....+|||||||||+|||+|+++ |+||||||||+|||+.+.+.|.+.|+++. +++|||+|||+++++..||||+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 5666778999999999999999996 69999999999999999999999998864 5899999999999997799999
Q ss_pred EE------eCCEEEEecChhHHhhcCC
Q 001189 950 LL------DSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 950 vl------~~G~i~~~g~~~~l~~~~~ 970 (1128)
+| ++|+|++.|+|+++.+...
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 99 6999999999999987643
No 31
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.9e-46 Score=405.18 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=194.5
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|+++||+++|+.+..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999964335799999999999999999999999999999999999999999999998 49
Q ss_pred EEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+|+||+|.+|..|++||+.+.....+....++++.+++.+.++.+|.+.++.+++.+.+||||||||++|||||+++|++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987544445556677888899999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHH-HHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001189 902 LVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l-~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||||++||+.+++.+.+.+ ++..+++|||+|||+++.+..||+|++|++|++++.|+++++.++
T Consensus 152 llLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 152 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999974 554467999999999999878999999999999999999999865
No 32
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.8e-46 Score=427.85 Aligned_cols=223 Identities=26% Similarity=0.423 Sum_probs=191.0
Q ss_pred ccEEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh--
Q 001189 742 GSIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-- 817 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-- 817 (1128)
..|+++||+++|+.. ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+..++
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 469999999999642 2359999999999999999999999999999999999999999999999999999887654
Q ss_pred -hhceEEEcCCCccccc-cHhhccccC---CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 818 -RKILGIIPQSPVLFSG-TVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 818 -r~~i~~v~Q~~~lf~~-Tv~~nl~~~---~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
|++||||||++.+|.. ||++|+.+. ..... +++.++|+.+++ +........+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL-----------~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL-----------GDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-----------GGGTTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------chHhcCChhhCCHHHHHH
Confidence 7789999999998876 999999642 11222 234445555444 344445557899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
++|||||+.+|+|||||||||+||+.+.+.|.+.|+++. .++|||+|||+++.+.. ||||++|++|+|++.|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999865 38999999999999987 999999999999999999999
Q ss_pred hhcCCCchHH
Q 001189 966 LSNEGSSFSK 975 (1128)
Q Consensus 966 ~~~~~~~~~~ 975 (1128)
+.++...+.+
T Consensus 252 ~~~p~~~~~~ 261 (366)
T 3tui_C 252 FSHPKTPLAQ 261 (366)
T ss_dssp HSSCCSHHHH
T ss_pred HhCCCcHHHH
Confidence 9876655543
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4.1e-46 Score=406.00 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=195.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++||+++|++...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| .|+|
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~ 70 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAY 70 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEE
Confidence 899999999964334799999999999999999999999999999999999999999999998 4999
Q ss_pred EcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 824 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 824 v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
+||+|.++..|+++|+.+.....++...++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|+|||
T Consensus 71 v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 150 (237)
T 2cbz_A 71 VPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL 150 (237)
T ss_dssp ECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred EcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999988889999998754444445667777788888888888899999999999999999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHHHHH---HHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCchHHHH
Q 001189 904 LDEATAAVDVRTDALIQKTIR---EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 977 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~---~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 977 (1128)
|||||++||+.+++.+.+.|. +..+++|||+|||+++.+..||+|++|++|++++.|+++++++.. +.|..++
T Consensus 151 LDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~-~~~~~~~ 226 (237)
T 2cbz_A 151 FDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAFAEFL 226 (237)
T ss_dssp EESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHT-SHHHHHH
T ss_pred EeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhcc-HHHHHHH
Confidence 999999999999999999994 334589999999999998779999999999999999999998653 3454443
No 34
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-45 Score=465.40 Aligned_cols=210 Identities=25% Similarity=0.365 Sum_probs=152.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHH---------HHHhcCCCCC------Cc------e
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML---------NTLFRIVELE------RG------R 801 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll---------~~l~g~~~p~------~G------~ 801 (1128)
.+++++++ ...|+||||+|++|+++||+|+||||||||+ +++.+...+. +| .
T Consensus 589 ~l~v~~~~-------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~ 661 (916)
T 3pih_A 589 SLKIKGVR-------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKM 661 (916)
T ss_dssp EEEEEEEC-------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEE
T ss_pred eEEEeeec-------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccce
Confidence 46666653 2579999999999999999999999999997 3444433332 22 3
Q ss_pred EEECCEecCCCChH----------Hhh-------------------------------hceEEEcCCCcccc--------
Q 001189 802 ILIDGFDIAKFGLM----------DLR-------------------------------KILGIIPQSPVLFS-------- 832 (1128)
Q Consensus 802 I~i~g~~i~~~~~~----------~~r-------------------------------~~i~~v~Q~~~lf~-------- 832 (1128)
|.+++.++...+.. ..| +..|+++|+..++.
T Consensus 662 i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~ 741 (916)
T 3pih_A 662 IAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDV 741 (916)
T ss_dssp EEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTT
T ss_pred EeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeeccc
Confidence 55665555432210 111 23466776665443
Q ss_pred -------------------------ccHhhccccCCCCC-HHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhH
Q 001189 833 -------------------------GTVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQ 885 (1128)
Q Consensus 833 -------------------------~Tv~~nl~~~~~~~-~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~LSgGq 885 (1128)
.|+.+++.++.... ..+.. +.++.+ |+.. .+++.+.+|||||
T Consensus 742 c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~---------~~L~~v--GL~~~~lgq~~~~LSGGE 810 (916)
T 3pih_A 742 CKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTL---------QVLHDV--GLGYVKLGQPATTLSGGE 810 (916)
T ss_dssp TTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHH---------HHHHHT--TGGGSBTTCCSTTCCHHH
T ss_pred ccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHH---------HHHHHc--CCchhhccCCccCCCHHH
Confidence 23344443332211 11122 233332 3332 3577788999999
Q ss_pred HHHHHHHHHhccCC---CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEE------eCCE
Q 001189 886 RQLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL------DSGR 955 (1128)
Q Consensus 886 rqrl~lArall~~p---~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl------~~G~ 955 (1128)
||||+|||||+++| +||||||||+|||+.+.+.|++.|+++. +|+|||+|+|+++++..||+|++| ++|+
T Consensus 811 rQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~ 890 (916)
T 3pih_A 811 AQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGY 890 (916)
T ss_dssp HHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCE
T ss_pred HHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCE
Confidence 99999999999875 7999999999999999999999999865 589999999999999899999999 8999
Q ss_pred EEEecChhHHhhcCC
Q 001189 956 VLEYDTPEELLSNEG 970 (1128)
Q Consensus 956 i~~~g~~~~l~~~~~ 970 (1128)
|++.|+|++++++++
T Consensus 891 Iv~~Gtpeel~~~~~ 905 (916)
T 3pih_A 891 IVATGTPEEIAKNPH 905 (916)
T ss_dssp EEEEESHHHHHSCTT
T ss_pred EEEEcCHHHHHhCCc
Confidence 999999999998764
No 35
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.9e-46 Score=413.52 Aligned_cols=214 Identities=28% Similarity=0.490 Sum_probs=183.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHhhhc
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 820 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 820 (1128)
.|+++||+++|+.. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 49999999999643 35999999999999999999999999999999999999999999999999994 2334567889
Q ss_pred eEEEcCCC--ccccccHhhccccCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSP--VLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~--~lf~~Tv~~nl~~~~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
||||||+| .+|..||++|+.+.. ....+ ++.++++.+ |++........+||||||||++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRT-----------GIEHLKDKPTHCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhcCCcccCCHHHHHHHHH
Confidence 99999998 477789999996421 22332 344444444 44444445556899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-C-CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||||+.+|+||||||||++||+.+.+.+.+.|+++. + ++|||+|||+++.+.. ||||++|++|++++.|++++++.+
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998865 3 8999999999999987 999999999999999999999764
No 36
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.6e-45 Score=395.12 Aligned_cols=218 Identities=35% Similarity=0.696 Sum_probs=193.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 198 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 198 (1128)
.++++|++|+|+. +++++|+++||++++|++++|+||||||||||+++|+|+++|++|. +.+.+.|+|+||+|++|+.
T Consensus 6 ~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 6 EVVMENVTAFWEE-GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEECSST-TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEECSCEEEECSSCCCCSB
T ss_pred eEEEEEEEEEeCC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccE-EEECCEEEEEecCCcccCC
Confidence 5899999999963 2468999999999999999999999999999999999999998764 5567789999999999988
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCH
Q 001189 199 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278 (1128)
Q Consensus 199 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~ 278 (1128)
||+|||.++......++.++++.+++.+.++.+|.++++.+++++.+|||||||||+|||||+++|+++||||||++||+
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 99999999865555566778888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHH
Q 001189 279 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELF 338 (1128)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 338 (1128)
.+++.+++.++....+++|+|++||+++.+..||+|++|++|++++.|+++++....+.|
T Consensus 164 ~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 223 (229)
T 2pze_A 164 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 223 (229)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHH
Confidence 999999875444334589999999999998889999999999999999999987654434
No 37
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5e-45 Score=398.38 Aligned_cols=217 Identities=21% Similarity=0.375 Sum_probs=184.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh-hhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 821 (1128)
.|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |+.|
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 369999999999999999999999999999999999999999999999999988776655 4569
Q ss_pred EEEcCCCccccc-cHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
+|+||++.+|.. |++||+.+.. ....++..+. +.+.++.++ |++...+....+||||||||++|||||+++
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999999977 9999997532 1112222222 223334332 355555666788999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 99999999999999999999999999875 58999999999998876 99999999999999999999874
No 38
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.2e-44 Score=394.51 Aligned_cols=223 Identities=50% Similarity=0.901 Sum_probs=198.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 198 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 198 (1128)
.++++|++|+|+. .++++|+|+||+|++|++++|+||||||||||+++|+|+++|++| .+.+.+.|+|+||+|++++.
T Consensus 3 ~l~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~i~~v~Q~~~~~~~ 80 (237)
T 2cbz_A 3 SITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG-HVAIKGSVAYVPQQAWIQND 80 (237)
T ss_dssp CEEEEEEEEESCT-TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEE-EEEECSCEEEECSSCCCCSE
T ss_pred eEEEEEEEEEeCC-CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEEEEcCCCcCCCc
Confidence 4899999999963 236799999999999999999999999999999999999999875 45567789999999999999
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCH
Q 001189 199 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278 (1128)
Q Consensus 199 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~ 278 (1128)
||+|||.++.....++..++.+.+++.+.+..+|.+++|.+++++.+|||||||||+|||||+.+|+++||||||++||+
T Consensus 81 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~ 160 (237)
T 2cbz_A 81 SLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160 (237)
T ss_dssp EHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCH
T ss_pred CHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 99999999865555566778888999888988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--ccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 279 HVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 279 ~~~~~i~~~~~--~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
.+++.+++.+. ....+|+|+|+|||+++.+..||+|++|++|++++.|+++++......|..++.
T Consensus 161 ~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 227 (237)
T 2cbz_A 161 HVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227 (237)
T ss_dssp HHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHH
Confidence 99999998664 222358999999999999888999999999999999999998877666666554
No 39
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.4e-44 Score=450.64 Aligned_cols=211 Identities=26% Similarity=0.355 Sum_probs=155.7
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-cCC-------CCCCc-------------e
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-RIV-------ELERG-------------R 801 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~-g~~-------~p~~G-------------~ 801 (1128)
.|+++|++. .+|+||||+|++||++||+|+||||||||+++|+ |.+ .+..| .
T Consensus 629 ~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 629 WLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp EEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred EEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 489999852 3799999999999999999999999999999854 221 12233 4
Q ss_pred EEECCEecCCCC---hH-------Hhh---------hceEEEcCCCccc-------------------------------
Q 001189 802 ILIDGFDIAKFG---LM-------DLR---------KILGIIPQSPVLF------------------------------- 831 (1128)
Q Consensus 802 I~i~g~~i~~~~---~~-------~~r---------~~i~~v~Q~~~lf------------------------------- 831 (1128)
|.+||.++...+ +. ..| +.+||+||...+-
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 788888875322 11 111 3468888864321
Q ss_pred ------------------------cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHH
Q 001189 832 ------------------------SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQR 886 (1128)
Q Consensus 832 ------------------------~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~LSgGqr 886 (1128)
..|+.+|+.++.... .+. ...+.++.+ |+.. ..+....+||||||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~--~~~------~~~~~L~~~--gL~~~~l~~~~~~LSGGek 851 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP--KIK------RKLETLYDV--GLGYMKLGQPATTLSGGEA 851 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH--HHH------HHHHHHHHT--TCSSSBTTCCGGGCCHHHH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch--hHH------HHHHHHHHc--CCCcccccCchhhCCHHHH
Confidence 112333333222111 010 122344543 5554 46667778999999
Q ss_pred HHHHHHHHhccCC---CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEE------eCCEE
Q 001189 887 QLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL------DSGRV 956 (1128)
Q Consensus 887 qrl~lArall~~p---~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl------~~G~i 956 (1128)
|||+|||+|+++| +||||||||+|||+.+.+.+++.|+++. .++|||+|||+++.+..||||++| ++|+|
T Consensus 852 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~I 931 (972)
T 2r6f_A 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQI 931 (972)
T ss_dssp HHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSE
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEE
Confidence 9999999999875 9999999999999999999999998865 589999999999998779999999 68999
Q ss_pred EEecChhHHhhcCC
Q 001189 957 LEYDTPEELLSNEG 970 (1128)
Q Consensus 957 ~~~g~~~~l~~~~~ 970 (1128)
++.|+|+++.+...
T Consensus 932 v~~g~~~el~~~~~ 945 (972)
T 2r6f_A 932 VAVGTPEEVAEVKE 945 (972)
T ss_dssp EEEESHHHHHTCTT
T ss_pred EEecCHHHHHhCch
Confidence 99999999987543
No 40
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=6.1e-45 Score=401.64 Aligned_cols=215 Identities=27% Similarity=0.457 Sum_probs=184.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHhhhc
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 820 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 820 (1128)
.|+++||+++|+. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4999999999964 36999999999999999999999999999999999999999999999999985 3344567888
Q ss_pred eEEEcCCCccccc-cHhhccccC----CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
|+||||++.+|.. ||++|+.+. ..... +++.++++.+ |++........+||||||||++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV-----------GLKDKAHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----------TCGGGTTSCGGGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CCchHhcCChhhCCHHHHHHHHH
Confidence 9999999998876 999999652 12222 2233344443 44444555567899999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||||++|++|++++.|+++++++.+
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999999998864 47999999999999987 9999999999999999999998654
Q ss_pred C
Q 001189 970 G 970 (1128)
Q Consensus 970 ~ 970 (1128)
.
T Consensus 251 ~ 251 (263)
T 2olj_A 251 Q 251 (263)
T ss_dssp C
T ss_pred c
Confidence 3
No 41
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.2e-45 Score=397.48 Aligned_cols=212 Identities=25% Similarity=0.334 Sum_probs=177.4
Q ss_pred EEEEEEEEEeCCCC--CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh----
Q 001189 744 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL---- 817 (1128)
Q Consensus 744 i~~~~v~~~y~~~~--~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~---- 817 (1128)
|+++||+++|+... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 359999999999999999999999999999999999999999999999999999887664
Q ss_pred hhceEEEcCCCccccc-cHhhccccC---C---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhh-hcCCCCCChhH
Q 001189 818 RKILGIIPQSPVLFSG-TVRFNLDPF---S---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFSVGQ 885 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~-Tv~~nl~~~---~---~~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v-~e~g~~LSgGq 885 (1128)
|+.|+||||+|.+|.. ||++|+.+. . ....+ ++.++++.+ |+.... .....+|||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-----------ELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHT-----------TCCGGGTTCCGGGSCHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHC-----------CCChhhhhCChhhCCHHH
Confidence 4569999999999976 999998531 1 22222 233333333 333322 45567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhhcCEEEEEeCCEEEEecChh
Q 001189 886 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPE 963 (1128)
Q Consensus 886 rqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~ 963 (1128)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+..||||++|++|++++.++++
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 9999999999999999999999999999999999999998753 89999999999976569999999999999999887
Q ss_pred HHh
Q 001189 964 ELL 966 (1128)
Q Consensus 964 ~l~ 966 (1128)
++.
T Consensus 231 ~~~ 233 (235)
T 3tif_A 231 GFD 233 (235)
T ss_dssp ---
T ss_pred hhc
Confidence 764
No 42
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.9e-44 Score=395.05 Aligned_cols=223 Identities=29% Similarity=0.466 Sum_probs=197.9
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.|+++|++|+|+. +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. ++..|
T Consensus 7 ~~~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCC-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 5999999999942 1357999999999999999999999999999999999999998875422 23459
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+|+||+|.+|+.||+|||.++.+ .+.+++.++++.+++.+.++.+|.|+++.+++++.+|||||||||+|||||+.+|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999998753 45677888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc-chHHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLME 343 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 343 (1128)
++|||||||+||+.+++.+++.+... .+|+|+|+|||+++.+..||+|++|++|++++.|+++++... .+.|..++.
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~-~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 99999999999999999999866544 468999999999999888999999999999999999999876 556665543
No 43
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6.3e-45 Score=415.25 Aligned_cols=219 Identities=24% Similarity=0.369 Sum_probs=185.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC--ChHHhhhc
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF--GLMDLRKI 820 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~--~~~~~r~~ 820 (1128)
.|+++||+++|+. .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .....+++
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999964 3799999999999999999999999999999999999999999999999998321 22235678
Q ss_pred eEEEcCCCccccc-cHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
||||||++.+|.. ||++|+.+... .. .+++.++++.+++.+ .......+||||||||++||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-----------LAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-----------GTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHHHH
Confidence 9999999999975 99999976422 11 234555566555443 33444468999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
|||+.+|++||||||||+||+.++..+++.|.+.. .+.|+|+|||+++++.. ||||++|++|+|++.|+|+++..++
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999999998776643 48999999999999987 9999999999999999999999876
Q ss_pred CCchH
Q 001189 970 GSSFS 974 (1128)
Q Consensus 970 ~~~~~ 974 (1128)
...|.
T Consensus 231 ~~~~~ 235 (359)
T 3fvq_A 231 ADLDA 235 (359)
T ss_dssp SCHHH
T ss_pred ccHHH
Confidence 55443
No 44
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.8e-45 Score=403.72 Aligned_cols=212 Identities=23% Similarity=0.335 Sum_probs=185.6
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5999999999964 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcc-ccccHhhccccCCC-----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 823 IIPQSPVL-FSGTVRFNLDPFSE-----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 823 ~v~Q~~~l-f~~Tv~~nl~~~~~-----~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
|+||++.+ |..||++|+.+... ...+++.++++.+++.+ .......+||||||||++|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-----------LAQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-----------TTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999977 56699999965321 12344556666655433 233334579999999999999999
Q ss_pred c------CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 897 R------RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 897 ~------~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+ +|++|||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+.. ||||++|++|++++.|++++++.
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999999999999999998753 4699999999999987 99999999999999999999874
No 45
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=4.1e-44 Score=448.19 Aligned_cols=211 Identities=22% Similarity=0.348 Sum_probs=152.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-cC----CC---CCCce-------------
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-RI----VE---LERGR------------- 801 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~-g~----~~---p~~G~------------- 801 (1128)
.++++|++. .+|+||||+|++||++||+|+||||||||+++|+ |. +. +..|.
T Consensus 647 ~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 719 (993)
T 2ygr_A 647 QLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKL 719 (993)
T ss_dssp EEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEE
T ss_pred eEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceE
Confidence 589999852 3799999999999999999999999999999853 22 21 23443
Q ss_pred EEECCEecCCCC---hH-------Hhh---------hceEEEcCCCccc-------------------------------
Q 001189 802 ILIDGFDIAKFG---LM-------DLR---------KILGIIPQSPVLF------------------------------- 831 (1128)
Q Consensus 802 I~i~g~~i~~~~---~~-------~~r---------~~i~~v~Q~~~lf------------------------------- 831 (1128)
|.+|+.++...+ +. ..| +..+|+||...+-
T Consensus 720 i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~ 799 (993)
T 2ygr_A 720 VRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEV 799 (993)
T ss_dssp ECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTT
T ss_pred EEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehh
Confidence 556665553221 11 111 3467888754220
Q ss_pred ------------------------cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHH
Q 001189 832 ------------------------SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQR 886 (1128)
Q Consensus 832 ------------------------~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt-~v~e~g~~LSgGqr 886 (1128)
..|+.+++.++.... .+ + ...+.++.+ |+.. ..+....+||||||
T Consensus 800 c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~--~~----~--~~~~~L~~l--gL~~~~l~~~~~~LSGGek 869 (993)
T 2ygr_A 800 CQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA--GV----H--RYLRTLVDV--GLGYVRLGQPAPTLSGGEA 869 (993)
T ss_dssp TTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCH--HH----H--HHHHHHHHT--TGGGSBTTCCGGGSCHHHH
T ss_pred ccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcch--HH----H--HHHHHHHHc--CCCcccccCccccCCHHHH
Confidence 012222222221110 00 0 112344443 5655 56777789999999
Q ss_pred HHHHHHHHhccCC---CEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEE------eCCEE
Q 001189 887 QLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL------DSGRV 956 (1128)
Q Consensus 887 qrl~lArall~~p---~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl------~~G~i 956 (1128)
|||+|||+|+++| +||||||||+|||+.+.+.|.+.|+++. .+.|||+|||+++++..||+|++| ++|+|
T Consensus 870 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~I 949 (993)
T 2ygr_A 870 QRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTV 949 (993)
T ss_dssp HHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEE
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEE
Confidence 9999999999875 9999999999999999999999998864 589999999999998779999999 68999
Q ss_pred EEecChhHHhhcCC
Q 001189 957 LEYDTPEELLSNEG 970 (1128)
Q Consensus 957 ~~~g~~~~l~~~~~ 970 (1128)
++.|+|+++.+...
T Consensus 950 v~~G~~~el~~~~~ 963 (993)
T 2ygr_A 950 VAQGTPEDVAAVPA 963 (993)
T ss_dssp EEEECHHHHHHCTT
T ss_pred EEecCHHHHHhCCH
Confidence 99999999987543
No 46
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8.8e-45 Score=416.70 Aligned_cols=217 Identities=23% Similarity=0.339 Sum_probs=187.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++|+. .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.||
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 3899999999964 3799999999999999999999999999999999999999999999999999887764 46799
Q ss_pred EEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
||||++.+|.. ||+||+.+.. .... +++.++++.++ ++........+||||||||++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~-----------L~~~~~r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ-----------LAHLLDRKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTT-----------CGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhcCChhHCCHHHHHHHHHHHH
Confidence 99999999976 9999997531 2222 23444455444 4444445556899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+.+|+|||||||||+||+.++..+.+.|+++.+ +.|+|+||||++++.. ||||+||++|+|++.|+|+++...+..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~ 227 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCcc
Confidence 9999999999999999999999999999998753 8999999999999987 999999999999999999999987665
Q ss_pred chH
Q 001189 972 SFS 974 (1128)
Q Consensus 972 ~~~ 974 (1128)
.|.
T Consensus 228 ~~v 230 (381)
T 3rlf_A 228 RFV 230 (381)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 47
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2e-44 Score=398.42 Aligned_cols=215 Identities=25% Similarity=0.357 Sum_probs=182.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC----------C
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----------F 812 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~----------~ 812 (1128)
.|+++|++++|+. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 3999999999964 369999999999999999999999999999999999999999999999999862 3
Q ss_pred Ch---HHhhhceEEEcCCCccccc-cHhhccccC----CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001189 813 GL---MDLRKILGIIPQSPVLFSG-TVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 880 (1128)
Q Consensus 813 ~~---~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~ 880 (1128)
+. ..+|++|+||||++.+|.. ||++|+.+. ..... +++.++++.+++.+.+ ......+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~ 153 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPVH 153 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGGG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCccc
Confidence 33 3467889999999998876 999999652 11222 2344445554443330 4444568
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEE
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||||++|++|++++
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 47899999999999986 99999999999999
Q ss_pred ecChhHHhhcC
Q 001189 959 YDTPEELLSNE 969 (1128)
Q Consensus 959 ~g~~~~l~~~~ 969 (1128)
.|+++++...+
T Consensus 234 ~g~~~~~~~~~ 244 (262)
T 1b0u_A 234 EGDPEQVFGNP 244 (262)
T ss_dssp EECHHHHHHSC
T ss_pred eCCHHHHHhCc
Confidence 99999998654
No 48
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.1e-44 Score=394.06 Aligned_cols=223 Identities=28% Similarity=0.463 Sum_probs=195.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++|+|+....+++|+|+||+|++|++++|+||||||||||+++|+|+++| +|.+.. ++..|
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 59999999999743235799999999999999999999999999999999999987 554321 23569
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 187 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
+|+||+|.+|+.||+|||.++.. .+.+++.++++.+++.+.++.+|++.+|.+++++.+|||||||||+|||||+.+|+
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999998753 34567788889999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 343 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 343 (1128)
+|||||||++||+.+++.+++.+... .+++|+|+|||+++.+..||+|++|++|++++.|+++++......|..++.
T Consensus 176 lllLDEPts~LD~~~~~~i~~~l~~l-~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 252 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQKAVEDL-RKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHH-TTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHh-cCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHH
Confidence 99999999999999999998865443 458999999999999888999999999999999999998876666665543
No 49
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-44 Score=396.05 Aligned_cols=213 Identities=25% Similarity=0.422 Sum_probs=184.1
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.|
T Consensus 14 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 46999999999964 379999999999999999999999999999999999999999999999999976 456678899
Q ss_pred EEEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|+||++.+|.. |+++|+.++. .... +++.++++.++ ++........+||||||||++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG-----------LGEKIKDRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-----------CGGGGGSBGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-----------CchHhcCChhhCCHHHHHHHHHHH
Confidence 999999998876 9999997531 1122 23444444444 434444455689999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
||+.+|+||||||||++||+.+.+.+++.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999999999999875 47999999999999988 999999999999999999998753
No 50
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-44 Score=394.96 Aligned_cols=220 Identities=26% Similarity=0.480 Sum_probs=196.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 187 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 187 (1128)
++++|++|+|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. ++..|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 357999999999999999999999999999999999999999876432 245699
Q ss_pred EEecCCCCCcccHHHHHhcC-C-CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 188 YVPQVSWIFNATVRDNILFG-S-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g-~-~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
|+||+|.+|+.||+|||.++ . ..+.+++.++++.+++.+.++.+|.|+++.+++++.+|||||||||+|||||+.+|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999989999999987 3 345677888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 342 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 342 (1128)
+|||||||++||+.+++.+++.+.... +|+|+|+|||+++.+..||+|++|++|++++.|+++++......|..++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 999999999999999999998665443 6899999999999888899999999999999999999877655555554
No 51
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.9e-44 Score=410.24 Aligned_cols=215 Identities=22% Similarity=0.378 Sum_probs=186.0
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++|||
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (359)
T 2yyz_A 4 IRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGM 79 (359)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEE
Confidence 899999999964 3699999999999999999999999999999999999999999999999999887753 578999
Q ss_pred EcCCCccccc-cHhhccccCCC---CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSE---HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~---~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
|||++.+|.. ||++|+.+... .. ++++.++++.+++.++ ......+||||||||++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~~~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNL-----------LDRKPTQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999999976 99999976422 11 2345555555554433 3344468999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCc
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 972 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~ 972 (1128)
+.+|++||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++..++...
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~ 228 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNM 228 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccH
Confidence 999999999999999999999999999988653 7899999999999876 9999999999999999999998776543
Q ss_pred h
Q 001189 973 F 973 (1128)
Q Consensus 973 ~ 973 (1128)
|
T Consensus 229 ~ 229 (359)
T 2yyz_A 229 F 229 (359)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.9e-44 Score=395.31 Aligned_cols=214 Identities=24% Similarity=0.305 Sum_probs=182.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChH-Hhhhce
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKIL 821 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i 821 (1128)
.|+++|++++|+. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. ..|+.|
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999876643 357789
Q ss_pred EEEcCCCcccc-ccHhhccccCCC----------------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFSE----------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 884 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~~----------------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 884 (1128)
+|+||++.+|. .||+||+.+... ....+. ...+.+.++.+ |++........+||||
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG 157 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSGG 157 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCHH
Confidence 99999998886 499999965311 111111 11233444443 5666666667789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 885 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 885 qrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999998864 47999999999999876 999999999999999999
Q ss_pred hHH
Q 001189 963 EEL 965 (1128)
Q Consensus 963 ~~l 965 (1128)
+++
T Consensus 238 ~~~ 240 (257)
T 1g6h_A 238 EEE 240 (257)
T ss_dssp HHH
T ss_pred HHh
Confidence 983
No 53
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.7e-44 Score=395.25 Aligned_cols=212 Identities=23% Similarity=0.345 Sum_probs=183.3
Q ss_pred EEEEEEEEEeCCCC---CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 744 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~---~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
|+++||+++|+.+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 89999999996222 3699999999999999999999999999999999999999999999999998642 67888
Q ss_pred eEEEcCCC--ccccccHhhccccCCC------CCHHHHHHHHHHhcHH--HHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 821 LGIIPQSP--VLFSGTVRFNLDPFSE------HSDADLWEALERAHLK--DAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 821 i~~v~Q~~--~lf~~Tv~~nl~~~~~------~~~~~i~~~l~~~~l~--~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
|+|+||+| .++..|+++|+.+... ...+++.++++.+++. ++..+ ...+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR-----------VPFFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTC-----------CGGGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccC-----------ChhhCCHHHHHHHH
Confidence 99999997 4567799999975321 1245567777776665 44433 33579999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999874 58999999999999987 999999999999999999998765
Q ss_pred C
Q 001189 969 E 969 (1128)
Q Consensus 969 ~ 969 (1128)
.
T Consensus 229 ~ 229 (266)
T 2yz2_A 229 Y 229 (266)
T ss_dssp S
T ss_pred c
Confidence 4
No 54
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.5e-44 Score=409.51 Aligned_cols=217 Identities=28% Similarity=0.447 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEe-CCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 742 GSIKFEDVVLRY-RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 742 g~i~~~~v~~~y-~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
..|+++|++++| +. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .|+.
T Consensus 13 ~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 469999999999 53 369999999999999999999999999999999999999999999999999987654 4678
Q ss_pred eEEEcCCCccccc-cHhhccccCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 892 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~---~~~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lA 892 (1128)
|+||||++.+|.. ||++|+.+.. ... ++++.++++..++. ........+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----------~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-----------SYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-----------GGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hHhcCCcccCCHHHHHHHHHH
Confidence 9999999999975 9999997531 122 23344555554443 334444468999999999999
Q ss_pred HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 893 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 893 rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
|||+.+|+|||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++++.. ||||++|++|+|++.|+|+++..++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988653 7999999999999877 9999999999999999999998766
Q ss_pred CCch
Q 001189 970 GSSF 973 (1128)
Q Consensus 970 ~~~~ 973 (1128)
...|
T Consensus 238 ~~~~ 241 (355)
T 1z47_A 238 GTLF 241 (355)
T ss_dssp SSHH
T ss_pred cchH
Confidence 5433
No 55
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.1e-44 Score=389.33 Aligned_cols=206 Identities=22% Similarity=0.287 Sum_probs=175.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---hh-
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR- 818 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r- 818 (1128)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 3899999999964 37999999999999999999999999999999999999999999999999998877543 34
Q ss_pred hceEEEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
++|+|+||++.+|.. |++||+.+.. .... +++.++++.+ |++........+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL-----------GLGDKLSRKPYELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT-----------TCTTCTTCCGGGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 679999999998865 9999996421 1111 2233334433 4444444555689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecC
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~ 961 (1128)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+..||+|++|++|++++.|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999998864 4799999999999885599999999999999886
No 56
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.6e-44 Score=410.05 Aligned_cols=215 Identities=23% Similarity=0.386 Sum_probs=185.1
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++|+|
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (362)
T 2it1_A 4 IKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGL 79 (362)
T ss_dssp EEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEE
Confidence 899999999964 3699999999999999999999999999999999999999999999999999887753 578999
Q ss_pred EcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
|||++.+|.. ||++|+.+.. .... +++.++++.+++. ........+||||||||++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~r~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-----------KLLNRYPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-----------TCTTCCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hHhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999997531 1222 2344555554443 333444468999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCc
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 972 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~ 972 (1128)
+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||||++|++|+|++.|+|+++..++...
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~ 228 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYK 228 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccch
Confidence 999999999999999999999999999988653 7999999999999876 9999999999999999999998766543
Q ss_pred h
Q 001189 973 F 973 (1128)
Q Consensus 973 ~ 973 (1128)
|
T Consensus 229 ~ 229 (362)
T 2it1_A 229 F 229 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 57
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.6e-43 Score=392.83 Aligned_cols=226 Identities=26% Similarity=0.412 Sum_probs=195.0
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
..|+++|++|+|+...++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. ++..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 3699999999996422357999999999999999999999999999999999999998875432 1345
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-CCH-HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSA-FEP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~-~~~-~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
|+||||+|.+|+.||+|||.++.. ... ++..++++..++.+.++.+|.|+.+.+++.+.+|||||||||+|||||+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999998899999999753 222 455666777888889999998888888999999999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHH
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 342 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 342 (1128)
|++||||||||+||+.+++.+++.+..... .|+|+|+|||+++.+..||+|++|++|++++.|+++++......|..++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 999999999999999999999986654332 4899999999999988899999999999999999999987766676654
Q ss_pred H
Q 001189 343 E 343 (1128)
Q Consensus 343 ~ 343 (1128)
.
T Consensus 255 ~ 255 (271)
T 2ixe_A 255 E 255 (271)
T ss_dssp H
T ss_pred H
Confidence 3
No 58
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=9.7e-44 Score=408.82 Aligned_cols=216 Identities=21% Similarity=0.349 Sum_probs=181.2
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++|+
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 3999999999964 3699999999999999999999999999999999999999999999999999887753 57899
Q ss_pred EEcCCCccccc-cHhhccccCCC---CCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE---HSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~---~~~~----~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
||||++.+|.. ||++|+.+... ...+ ++.++++.++ ++........+||||||||++||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~-----------L~~~~~r~~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ-----------IEELLNRYPAQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTT-----------CGGGTTSCTTTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999976432 2222 3444555544 4444445557899999999999999
Q ss_pred hccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 001189 895 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 971 (1128)
Q Consensus 895 ll~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~ 971 (1128)
|+.+|++||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++++.. ||||++|++|+|++.|+|+++..++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 235 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 235 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 9999999999999999999999999999988653 7899999999999876 999999999999999999999877654
Q ss_pred ch
Q 001189 972 SF 973 (1128)
Q Consensus 972 ~~ 973 (1128)
.|
T Consensus 236 ~~ 237 (372)
T 1v43_A 236 VF 237 (372)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 59
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=6.7e-44 Score=388.58 Aligned_cols=208 Identities=27% Similarity=0.409 Sum_probs=178.6
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|++ +|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..|++|+|
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999987643 35778999
Q ss_pred EcCCCccccc-cHhhccccCCCC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 824 IPQSPVLFSG-TVRFNLDPFSEH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~~~-~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+||++.+|.. |++||+.+.... . ++++.++++.. |++........+||||||||++|||||++
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-----------GIAHLLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT-----------TCTTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHc-----------CCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999876 999999764322 1 12233344433 44444445556899999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 969 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~ 969 (1128)
+|++|||||||++||+.+++.+.+.|+++.+ ++|||+|||+++.+.. ||||++|++|++++.|+++++++..
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999999988743 7999999999999876 9999999999999999999998654
No 60
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1e-43 Score=405.53 Aligned_cols=214 Identities=25% Similarity=0.367 Sum_probs=185.5
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEE
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 823 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 823 (1128)
|+++|++++|+. . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .|++|+|
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999953 4 9999999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EcCCCccccc-cHhhccccCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 824 IPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 824 v~Q~~~lf~~-Tv~~nl~~~~----~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|||++.+|.. ||++|+.+.. ...++++.++++..++.++ ......+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~~~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL-----------LDRNPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTT-----------TTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999976 9999997531 1122456666666555433 3334468999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCCch
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 973 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~~~~~~~ 973 (1128)
|++||||||||+||+.+++.+.+.|+++. .+.|+|+|||+++++.. ||||++|++|++++.|+|+++.+++...|
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 99999999999999999999999998864 37999999999999877 99999999999999999999987765444
No 61
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.6e-44 Score=409.32 Aligned_cols=217 Identities=23% Similarity=0.343 Sum_probs=184.7
Q ss_pred EEEEEEEEEeCCCCCC--ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC---hHHhh
Q 001189 744 IKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLR 818 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~--~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r 818 (1128)
|+++|++++|+. .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....|
T Consensus 4 l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 4 IIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp EEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 899999999964 36 999999999999999999999999999999999999999999999999986521 22357
Q ss_pred hceEEEcCCCccccc-cHhhccccCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~~~---~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
++|+||||++.+|.. ||++|+.+... ... +++.++++..++.+ .......+||||||||++
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~~~~~~LSGGq~QRva 150 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-----------VLNHFPRELSGAQQQRVA 150 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHH
Confidence 789999999999976 99999976322 222 33455555554443 334444689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+.+|++||||||||+||+.++..+++.|+++.+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++..
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988643 7999999999999877 99999999999999999999987
Q ss_pred cCCCch
Q 001189 968 NEGSSF 973 (1128)
Q Consensus 968 ~~~~~~ 973 (1128)
++...|
T Consensus 231 ~p~~~~ 236 (353)
T 1oxx_K 231 NPVSIQ 236 (353)
T ss_dssp SCSSHH
T ss_pred CcccHH
Confidence 665443
No 62
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.7e-44 Score=399.13 Aligned_cols=212 Identities=22% Similarity=0.327 Sum_probs=181.1
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHhhhc
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 820 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 820 (1128)
.|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 5999999999964 36999999999999999999999999999999999999999999999999987 6777778899
Q ss_pred eEEEcCCCcc-ccc--cHhhccccCCC--------CCH---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001189 821 LGIIPQSPVL-FSG--TVRFNLDPFSE--------HSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 886 (1128)
Q Consensus 821 i~~v~Q~~~l-f~~--Tv~~nl~~~~~--------~~~---~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqr 886 (1128)
|+|+||++.+ |.. |++||+.+... ..+ +++.++++.. |++........+||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGqk 167 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV-----------GMSAKAQQYIGYLSTGEK 167 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHH
Confidence 9999999864 444 99999975321 111 1233333333 444445555678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEE--EEeecCchhhhh-cCEEEEEeCCEEEEecCh
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTP 962 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tv--i~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~ 962 (1128)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|| |+|||+++.+.. ||+|++|++|++++.|++
T Consensus 168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 247 (279)
T 2ihy_A 168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247 (279)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999988653 7899 999999999876 999999999999999999
Q ss_pred hHHhh
Q 001189 963 EELLS 967 (1128)
Q Consensus 963 ~~l~~ 967 (1128)
+++.+
T Consensus 248 ~~~~~ 252 (279)
T 2ihy_A 248 EDILT 252 (279)
T ss_dssp HHHCS
T ss_pred HHHhc
Confidence 99864
No 63
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.4e-43 Score=408.37 Aligned_cols=216 Identities=20% Similarity=0.339 Sum_probs=184.4
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC------CChHH
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------FGLMD 816 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~------~~~~~ 816 (1128)
.|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 3899999999964 369999999999999999999999999999999999999999999999999876 554
Q ss_pred hhhceEEEcCCCccccc-cHhhccccCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 817 LRKILGIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 817 ~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~---~~~~----~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
.+++||||||++.+|.. ||++|+.+.. .... +++.++++.+++. ........+||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~r~~~~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-----------ELLNRKPRELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-----------GGTTCCGGGSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCCcccCCHHHHHH
Confidence 35789999999999965 9999997531 1222 2344555554443 33344446899999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l 965 (1128)
++|||||+.+|+|||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++++.. ||||++|++|++++.|+|+++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988653 7899999999999877 999999999999999999999
Q ss_pred hhcCCCch
Q 001189 966 LSNEGSSF 973 (1128)
Q Consensus 966 ~~~~~~~~ 973 (1128)
..++...|
T Consensus 228 ~~~p~~~~ 235 (372)
T 1g29_1 228 YDKPANTF 235 (372)
T ss_dssp HHSCSBHH
T ss_pred HhCcccHH
Confidence 87765444
No 64
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.6e-43 Score=385.78 Aligned_cols=207 Identities=22% Similarity=0.310 Sum_probs=182.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++||+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|+ |+|.++|.++...+...+|++++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 3899999986 4899999999999999999999999999999999999999 99999999998888888899999
Q ss_pred EEcCCCccccc-cHhhccccCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 823 IIPQSPVLFSG-TVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 823 ~v~Q~~~lf~~-Tv~~nl~~~~~--~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
|+||++.+|.. |++||+.+... ..++++.++++..++. ........+||||||||++|||||+++|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-----------DKLGRSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCG-----------GGTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998865 99999976431 1355566666665543 3334445689999999999999999999
Q ss_pred C-------EEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 900 K-------ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 900 ~-------iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+ +|||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999999874 57899999999999866 99999999999999999999864
No 65
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.7e-43 Score=393.69 Aligned_cols=208 Identities=25% Similarity=0.390 Sum_probs=175.6
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|+++||++.| .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 469999999864 3699999999999999999999999999999999999999999999998 49
Q ss_pred EEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001189 822 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 901 (1128)
Q Consensus 822 ~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~i 901 (1128)
+|+||++.+|.+|+++|+. .....+..+.++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||+++|++
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 9999999999999999997 323344556677788899999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCHHHHHHHHHHH-HHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 001189 902 LVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l-~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||||++||+.++..+.+.+ ++..+++|||+|||+++.+..||+|++|++|++++.|++++++.
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999974 44446899999999999987899999999999999999999875
No 66
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.8e-43 Score=385.87 Aligned_cols=212 Identities=25% Similarity=0.351 Sum_probs=170.5
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHh-hhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~-r~~ 820 (1128)
|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++...+.... |..
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 4 LEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred EEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 899999999964 3799999999999999999999999999999999999 89999999999999988877665 456
Q ss_pred eEEEcCCCccccc-cHhhccccCC----C--CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCC-CChhHHHHHHH
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFS----E--HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGEN-FSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~----~--~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~-LSgGqrqrl~l 891 (1128)
++|+||+|.+|.+ |+++|+.+.. . ....+.. ..+.+.++.+ |++ ........+ ||||||||++|
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv~i 154 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW-----TKVKKALELL--DWDESYLSRYLNEGFSGGEKKRNEI 154 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHH--TCCGGGGGSBTTCC----HHHHHHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHHHHHHHH
Confidence 9999999999876 9999986421 0 1111111 1122233332 442 223333456 99999999999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh--cCEEEEEeCCEEEEecChhH
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEE 964 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~--~D~i~vl~~G~i~~~g~~~~ 964 (1128)
||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++.
T Consensus 155 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 155 LQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999999999875 47899999999999987 59999999999999999873
No 67
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-42 Score=401.68 Aligned_cols=215 Identities=23% Similarity=0.360 Sum_probs=193.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
..|+++|++|+|+. +++++|+|+||+|++|++++|+||||||||||+++|+|+++ ++|.+.. +++.
T Consensus 18 ~~i~~~~l~~~y~~-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp CCEEEEEEEEESSS-SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CeEEEEEEEEEecC-CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 46999999999963 24689999999999999999999999999999999999987 6654321 2346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 001189 186 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 265 (1128)
Q Consensus 186 i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~ 265 (1128)
||||+|++.+|..||+||+.+......+++.++++.+++.+.++..|..+++.++++|.+|||||||||+|||||+.+|+
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998665667788899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+||||||||+||+..++.+.+.+.. ..+++|+|+|||+++.+..||||++|++|+|++.|+++++....
T Consensus 176 lLLLDEPts~LD~~~~~~l~~~l~~-~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVTYQIIRRTLKQ-AFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp EEEEESHHHHSCHHHHHHHHHHHHT-TTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHH-HhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999876543 44689999999999988889999999999999999999998763
No 68
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.6e-42 Score=384.59 Aligned_cols=232 Identities=34% Similarity=0.621 Sum_probs=180.6
Q ss_pred HHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 95 RMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 95 Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
|+.++++.+.+... ........+.++++|++|.+ +++|+++||+|++|++++|+||||||||||+++|+|+++|
T Consensus 17 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 17 GFGELFEKAKQNNN-NRKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp HHHHHHHHCC------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred HHHHHhcccccccc-cccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 67777765442111 11111223469999999853 4799999999999999999999999999999999999999
Q ss_pred CCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 175 VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 175 ~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
++|. +.+.++|+|+||++.+|+.||+|||. +......++.++++.+++.+.++.+|.++++.+++.+.+||||||||+
T Consensus 91 ~~G~-I~~~g~i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv 168 (290)
T 2bbs_A 91 SEGK-IKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168 (290)
T ss_dssp EEEE-EECCSCEEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHH
T ss_pred CCcE-EEECCEEEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHH
Confidence 8764 55677899999999999889999998 644445556677888899988999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhc
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
+|||||+.+|+++||||||++||+.+++.+++.++....+|+|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence 99999999999999999999999999999987544333458999999999999888999999999999999999988653
No 69
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.4e-42 Score=380.97 Aligned_cols=206 Identities=22% Similarity=0.293 Sum_probs=178.1
Q ss_pred EEEEEEEEEeCCC--CCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 744 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~--~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
|+++|++++|+.. ..++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.++|.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1369999999999 9999999999999999999999999 9999999999998754 23 7789
Q ss_pred E-EEcCCCccccccHhhccccCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 822 G-IIPQSPVLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 822 ~-~v~Q~~~lf~~Tv~~nl~~~~---~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGqrqrl~lArall 896 (1128)
+ |+||+|.+ ..|+++|+.++. ...++++.++++.. |++ ...+....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKAL-----------KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHT-----------TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHc-----------CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 889999997532 22344455555543 454 5555666789999999999999999
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cC-EEEEEeCCEEEEecChhHHhhc
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CD-RILLLDSGRVLEYDTPEELLSN 968 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D-~i~vl~~G~i~~~g~~~~l~~~ 968 (1128)
++|++|||||||++||+.+++.+.+.|++..+ |||+|||+++.+.. || +|++|++|++++.|+++++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999998644 99999999999876 99 9999999999999999999753
No 70
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.1e-42 Score=383.20 Aligned_cols=215 Identities=19% Similarity=0.291 Sum_probs=177.8
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHh-hh
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RK 819 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~-r~ 819 (1128)
.|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++...+.... |+
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 4999999999953 3799999999999999999999999999999999999 57999999999999988776665 44
Q ss_pred ceEEEcCCCccccc-cHhhccccCC----------CCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCC-CCChhHH
Q 001189 820 ILGIIPQSPVLFSG-TVRFNLDPFS----------EHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGE-NFSVGQR 886 (1128)
Q Consensus 820 ~i~~v~Q~~~lf~~-Tv~~nl~~~~----------~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~-v~e~g~-~LSgGqr 886 (1128)
.|+|+||+|.+|.. |+++|+.... ..+..+.. ..+.+.++. .|+++. ...... +||||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ-----DLMEEKIAL--LKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHH-----HHHHHHHHH--TTCCTTTTTSBTTTTCCHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHH-----HHHHHHHHH--cCCChhHhcCCcccCCCHHHH
Confidence 69999999998876 8999885310 01121111 112334444 355432 233333 5999999
Q ss_pred HHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh--cCEEEEEeCCEEEEecChh
Q 001189 887 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPE 963 (1128)
Q Consensus 887 qrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~--~D~i~vl~~G~i~~~g~~~ 963 (1128)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||||++|++|++++.|+++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999875 37899999999999876 8999999999999999998
Q ss_pred HHh
Q 001189 964 ELL 966 (1128)
Q Consensus 964 ~l~ 966 (1128)
++.
T Consensus 251 ~~~ 253 (267)
T 2zu0_C 251 LVK 253 (267)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 71
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.9e-42 Score=377.91 Aligned_cols=199 Identities=23% Similarity=0.376 Sum_probs=169.9
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.|+++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. +++.|+
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 38999999999622 4799999999999999999999999999999999999999999998 356799
Q ss_pred EEcCCCccc-cccHhhccccCCC--------CCH---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 823 IIPQSPVLF-SGTVRFNLDPFSE--------HSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 823 ~v~Q~~~lf-~~Tv~~nl~~~~~--------~~~---~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
|+||++.+| ..|+++|+.+... ... +++.++++..+ ++........+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLN-----------LTHLAKREFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTT-----------CGGGTTSBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcC-----------ChHHhcCChhhCCHHHHHHHH
Confidence 999999887 5599999975321 111 23444444444 444444455689999999999
Q ss_pred HHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 891 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 891 lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|+ ++.|+++++++
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999999999998753 7999999999999876 99999999999 99999999864
No 72
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.3e-41 Score=377.18 Aligned_cols=207 Identities=25% Similarity=0.423 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 184 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 184 (1128)
.++++|++|+|+. .+++|+||||+|++|++++|+||||||||||+++|+|+++|++|.+.. ++.
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 6999999999963 246999999999999999999999999999999999999998875421 234
Q ss_pred cEEEEecCC--CCCcccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 185 TVAYVPQVS--WIFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 185 ~i~~v~Q~~--~l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
.||||+|+| .+|..||+|||.|+. ..+. +++.++++.+++.+..+ ....+|||||||||+
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHHHHHHH
Confidence 699999997 467899999998762 1222 34566677777654333 234689999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhh
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||||+.+|++||||||||+||+.+.+.+++.+.+.. .+|+|+|+|||+++++. .||+|++|++|+++++|+++++..
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999998665443 34899999999999986 499999999999999999999887
Q ss_pred cchHH
Q 001189 334 NGELF 338 (1128)
Q Consensus 334 ~~~~~ 338 (1128)
+...+
T Consensus 234 ~~~~~ 238 (275)
T 3gfo_A 234 EKEVI 238 (275)
T ss_dssp HHHHH
T ss_pred CHHHH
Confidence 65433
No 73
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.2e-41 Score=370.33 Aligned_cols=202 Identities=25% Similarity=0.388 Sum_probs=163.1
Q ss_pred EEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee----------------
Q 001189 120 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 182 (1128)
Q Consensus 120 i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~---------------- 182 (1128)
++++|++|+|+.+. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..-
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997422 2469999999999999999999999999999999999999998754320
Q ss_pred cCcEEEEecCCCCCc-ccHHHHHhcCC------CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 183 RGTVAYVPQVSWIFN-ATVRDNILFGS------AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~------~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
+..||||+|+|.++. .||+||+.++. .... +++.++++.+++.+.. ......+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 125999999999875 59999998741 1222 2334455555553321 1334578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchhcCCEEEEEeCCeEeeecChhH
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~ 330 (1128)
|||+|||||+.+|++||||||||+||+.+.+.+++.+.+...+ |+|+|+|||+++....||+|++|++|++++.++.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 9999999999999999999999999999999999866554333 899999999999877899999999999999887665
Q ss_pred H
Q 001189 331 L 331 (1128)
Q Consensus 331 l 331 (1128)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
No 74
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.7e-41 Score=385.25 Aligned_cols=208 Identities=25% Similarity=0.370 Sum_probs=174.5
Q ss_pred CCcEEEEeEEEEeCCCC-CCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------
Q 001189 117 LPAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------- 181 (1128)
Q Consensus 117 ~~~i~~~~~~f~~~~~~-~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------- 181 (1128)
.+.|+++|++++|+.+. ..++|+||||+|++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 35799999999997432 246999999999999999999999999999999999999999875432
Q ss_pred -ecCcEEEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHH
Q 001189 182 -IRGTVAYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 252 (1128)
Q Consensus 182 -~~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkq 252 (1128)
.+..||||+|++.++ ..||+|||.++. ..+ .+++.++++.++|.+..+..| .+|||||||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----------~~LSGGqkQ 170 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQ 170 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT-----------TTSCHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHH
Confidence 245799999999887 569999998752 122 234666777777765444433 589999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhH
Q 001189 253 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 253 RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 330 (1128)
||+|||||+.+|++||||||||+||+.+.+.+++.+.+... .|.|+|+|||+++.+.. ||||++|++|+++++|++++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999986655433 48999999999999865 99999999999999999999
Q ss_pred Hhhcc
Q 001189 331 LSNNG 335 (1128)
Q Consensus 331 l~~~~ 335 (1128)
+..+.
T Consensus 251 v~~~p 255 (366)
T 3tui_C 251 VFSHP 255 (366)
T ss_dssp HHSSC
T ss_pred HHhCC
Confidence 88653
No 75
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.4e-40 Score=379.54 Aligned_cols=203 Identities=28% Similarity=0.455 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 184 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 184 (1128)
.|+++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 5899999999963 57999999999999999999999999999999999999999875421 134
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC----C---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 001189 185 TVAYVPQVSWIF-NATVRDNILFGSAF----E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 256 (1128)
Q Consensus 185 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~----~---~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL 256 (1128)
.||||+|++.+| ..||+|||.|+... . .+++.++++.++|.+..+..| .+|||||||||+|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 699999999988 57999999997431 1 245667777777765544443 5899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 257 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 257 ARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
||||+.+|++||||||||+||+..++.+.+.+.+.. ..|.|+|+|||+++++. .||||++|++|+|++.|+++++..+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999987665543 35899999999998875 5999999999999999999998766
Q ss_pred c
Q 001189 335 G 335 (1128)
Q Consensus 335 ~ 335 (1128)
.
T Consensus 230 p 230 (359)
T 3fvq_A 230 P 230 (359)
T ss_dssp C
T ss_pred c
Confidence 4
No 76
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-41 Score=359.13 Aligned_cols=194 Identities=21% Similarity=0.350 Sum_probs=164.2
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
..|+++||+++|+. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..|+.|
T Consensus 9 ~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred ceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 35999999999953 6999999999999999999999999999999999999999999999999986 367889
Q ss_pred EEEcCCCccccc-cHhhccccCC-----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 822 GIIPQSPVLFSG-TVRFNLDPFS-----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 822 ~~v~Q~~~lf~~-Tv~~nl~~~~-----~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+|+||+|.+|.. |+++|+.++. ...++++.++++.. |++.. +....+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999998876 9999996421 11234455555543 44444 555678999999999999999
Q ss_pred ccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhh-cCEEEEEeCCEE
Q 001189 896 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 896 l~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i 956 (1128)
+++|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998865 47899999999999988 77765 445555
No 77
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.3e-40 Score=365.08 Aligned_cols=202 Identities=29% Similarity=0.395 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 184 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 184 (1128)
.++++|++|+|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++.
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 5999999999952 57999999999999999999999999999999999999998875422 123
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCC----CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 185 TVAYVPQVSWIFN-ATVRDNILFGS----AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
.|+||+|++.+|. .||+||+.++. ... .+++.++++..++.+..+ ....+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-----------AYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHH
Confidence 5999999998875 59999998742 122 234556666666654332 334689999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||||+.+|++|||||||++||+.+.+.+++.+.....+|+|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999866554445899999999999986 5899999999999999999888654
No 78
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.1e-40 Score=359.55 Aligned_cols=202 Identities=23% Similarity=0.375 Sum_probs=165.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|++|+|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 5899999999963 57999999999999999999999999999999999999998875422 1235
Q ss_pred EEEEecCCCCCcc-cHHHHHhcCC-C-CCH----HHHHHHHHHhC-cHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 186 VAYVPQVSWIFNA-TVRDNILFGS-A-FEP----ARYEKAIDVTS-LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 186 i~~v~Q~~~l~~~-Tv~eni~~g~-~-~~~----~~~~~~~~~~~-l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
|+|+||++.+|.. ||+||+.++. . .+. +++.++++..+ +.+ ..+....+||||||||++||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-----------RLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-----------TTTSBSSSSCHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-----------HhcCChhhCCHHHHHHHHHH
Confidence 9999999998864 9999999863 1 111 22333333331 221 23445678999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||+.+|++|||||||++||+.+.+.+++.+.....+|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 152 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 152 RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999999866554346899999999998764 6999999999999999999888654
No 79
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.7e-40 Score=363.17 Aligned_cols=205 Identities=25% Similarity=0.404 Sum_probs=172.8
Q ss_pred cEEEEeEEEEeCCCCC--CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------ecCcEE
Q 001189 119 AISIRNGYFSWDSKAE--RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVA 187 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~--~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~ 187 (1128)
.++++|++|+|+.+.. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..||
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 4789999999962111 46999999999999999999999999999999999999998875432 245699
Q ss_pred EEecCC--CCCcccHHHHHhcCCC------CCHHHHHHHHHHhCcH--HHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 188 YVPQVS--WIFNATVRDNILFGSA------FEPARYEKAIDVTSLQ--HDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 188 ~v~Q~~--~l~~~Tv~eni~~g~~------~~~~~~~~~~~~~~l~--~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
|++|+| .++..||+||+.++.. ...+++.++++..++. +..+..| .+|||||||||+||
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVAIA 150 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHHHH
Confidence 999996 4578899999998632 1245677888888887 5554443 58999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhhc
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||+.+|++|||||||++||+.+.+.+++.+.....+|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998665543458999999999999875 999999999999999998887643
No 80
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.8e-40 Score=380.94 Aligned_cols=203 Identities=30% Similarity=0.416 Sum_probs=172.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.|+++|++++|+. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..|||
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEE
Confidence 4899999999963 57999999999999999999999999999999999999999875432 1245999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
|+|++.+| ..||+|||.|+. ..+. +++.++++..++.+..+..| .+|||||||||+|||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHHHH
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHHHH
Confidence 99999998 569999999862 2222 45666777777765444433 58999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+.+|++||||||||+||+..++.+++.+.+... .|.|+|+|||+++++. .||||++|++|++++.|+++++....
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 999999999999999999999999887655433 3899999999998865 59999999999999999999987653
No 81
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-40 Score=364.37 Aligned_cols=202 Identities=28% Similarity=0.420 Sum_probs=170.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------------
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------- 181 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 5999999999952 57999999999999999999999999999999999999998875421
Q ss_pred --------ecCcEEEEecCCCCCc-ccHHHHHhcCC----CCC----HHHHHHHHHHhCcHHH-HhcCCCCCcccccCCC
Q 001189 182 --------IRGTVAYVPQVSWIFN-ATVRDNILFGS----AFE----PARYEKAIDVTSLQHD-LDLLPGGDVTEIGERG 243 (1128)
Q Consensus 182 --------~~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~-~~~l~~g~~t~vg~~g 243 (1128)
.+..||||+|++.+|. .||+||+.++. ... .+++.++++..++.+. .+.. .
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------P 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------G
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-----------c
Confidence 1235999999998875 59999998742 122 2345667777777665 4433 3
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeE
Q 001189 244 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMV 322 (1128)
Q Consensus 244 ~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i 322 (1128)
.+|||||||||+|||||+.+|++||||||||+||+.+.+.+++.+.....+|+|+|+|||+++.+. .||+|++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 589999999999999999999999999999999999999999866544445899999999999986 5999999999999
Q ss_pred eeecChhHHhhc
Q 001189 323 KEEGTFEDLSNN 334 (1128)
Q Consensus 323 ~~~g~~~~l~~~ 334 (1128)
++.|+++++...
T Consensus 232 ~~~g~~~~~~~~ 243 (262)
T 1b0u_A 232 EEEGDPEQVFGN 243 (262)
T ss_dssp EEEECHHHHHHS
T ss_pred EEeCCHHHHHhC
Confidence 999999988654
No 82
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.9e-40 Score=361.95 Aligned_cols=201 Identities=26% Similarity=0.363 Sum_probs=170.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCC-c
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF-N 197 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~-~ 197 (1128)
.++++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+. ++..|+|+||++.++ .
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-~~~~i~~v~q~~~~~~~ 80 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-VYQSIGFVPQFFSSPFA 80 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-ECSCEEEECSCCCCSSC
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-EeccEEEEcCCCccCCC
Confidence 4899999999962 25799999999999999999999999999999999999999987665 667899999999886 7
Q ss_pred ccHHHHHhcCCC--------CC---HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 198 ATVRDNILFGSA--------FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 198 ~Tv~eni~~g~~--------~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
.||+||+.++.. .. .+++.++++..++.+..+ ....+|||||||||+|||||+.+|++
T Consensus 81 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~p~l 149 (253)
T 2nq2_C 81 YSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLILIARAIASECKL 149 (253)
T ss_dssp CBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 899999998631 11 234566667666654332 23468999999999999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|||||||++||+.+++.+++.+.....+ |+|+|++||+++.+. .||+|++|++|+ ++.|+++++...
T Consensus 150 llLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~ 218 (253)
T 2nq2_C 150 ILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTS 218 (253)
T ss_dssp EEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCc
Confidence 9999999999999999999866554444 899999999999884 699999999999 999999888643
No 83
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.2e-40 Score=361.16 Aligned_cols=203 Identities=24% Similarity=0.397 Sum_probs=170.1
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----------ecCc
Q 001189 117 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGT 185 (1128)
Q Consensus 117 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~ 185 (1128)
.+.|+++|++++|+ ++++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..
T Consensus 13 ~~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 89 (256)
T 1vpl_A 13 MGAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89 (256)
T ss_dssp -CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTT
T ss_pred CCeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhc
Confidence 35799999999995 257999999999999999999999999999999999999998875432 2346
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCC---CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 001189 186 VAYVPQVSWIFN-ATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 257 (1128)
Q Consensus 186 i~~v~Q~~~l~~-~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLA 257 (1128)
|||+||++.++. .||+||+.++. .... +++.++++..++.+..+ ....+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHH
Confidence 999999998875 59999998742 1222 34556677777654433 23468999999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecChhHHhh
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|||+.+|++|||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999998665544468999999999999876 89999999999999999888753
No 84
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.7e-40 Score=358.79 Aligned_cols=195 Identities=23% Similarity=0.337 Sum_probs=162.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----e------------
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I------------ 182 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----~------------ 182 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. +
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 5899999999963 57999999999999999999999999999999999999998875422 1
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 183 RGTVAYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
+..|+|++|++.++ ..||+||+.++. ... .+++.++++..++.+.. .....+|||||||||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-----------SRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHH
Confidence 14599999999887 469999998752 111 23345555655554322 234468999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecC
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 327 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 327 (1128)
+|||||+.+|+++||||||++||+.+.+.+++.+.....+|+|+|+|||+++.+..||+|++|++|+++++|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999866554445899999999999887799999999999998875
No 85
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.8e-40 Score=362.67 Aligned_cols=198 Identities=20% Similarity=0.358 Sum_probs=165.0
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------------ecCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 185 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 185 (1128)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 57999999999999999999999999999999999999998875422 1235
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCCC----------------C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCC
Q 001189 186 VAYVPQVSWIF-NATVRDNILFGSAF----------------E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 244 (1128)
Q Consensus 186 i~~v~Q~~~l~-~~Tv~eni~~g~~~----------------~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~ 244 (1128)
|+|++|++.++ ..||+||+.++... + .+++.++++..++.+. ......
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-----------hCCCch
Confidence 99999999887 57999999886311 1 1234445555554432 234456
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCCEEEEEeCCeEe
Q 001189 245 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVK 323 (1128)
Q Consensus 245 ~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~ 323 (1128)
+|||||||||+|||||+.+|++|||||||++||+.+.+.+++.+.+...+|+|+|+|||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 89999999999999999999999999999999999999999866554445899999999999876 58999999999999
Q ss_pred eecChhH
Q 001189 324 EEGTFED 330 (1128)
Q Consensus 324 ~~g~~~~ 330 (1128)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999888
No 86
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5e-40 Score=363.52 Aligned_cols=203 Identities=24% Similarity=0.334 Sum_probs=170.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 185 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 185 (1128)
+.++++|+++.|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 10 ~~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred ceEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 46999999999963 57999999999999999999999999999999999999999875432 1234
Q ss_pred EEEEecCCCC-CcccHHHHHhcCCC-----CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 186 VAYVPQVSWI-FNATVRDNILFGSA-----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 186 i~~v~Q~~~l-~~~Tv~eni~~g~~-----~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
++|++|++.+ +..||+||+.++.. ...++..++++.+++.+..+ ....+|||||||||+||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-----------RDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-----------SBGGGCCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 9999999887 57899999998742 12345666777776643222 2335899999999999999
Q ss_pred Hcc------CCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 260 VYS------NSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 260 l~~------~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|+. +|++||||||||+||+.+.+.+++.+.+... .++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999 9999999999999999999999986654433 3579999999999976 5999999999999999999998
Q ss_pred hhc
Q 001189 332 SNN 334 (1128)
Q Consensus 332 ~~~ 334 (1128)
...
T Consensus 236 ~~~ 238 (266)
T 4g1u_C 236 LNA 238 (266)
T ss_dssp CCH
T ss_pred hCc
Confidence 754
No 87
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.9e-40 Score=374.11 Aligned_cols=206 Identities=27% Similarity=0.410 Sum_probs=173.2
Q ss_pred CCcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcE
Q 001189 117 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTV 186 (1128)
Q Consensus 117 ~~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i 186 (1128)
.+.++++|++++|++ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|.+.. .++.|
T Consensus 12 ~~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 12 SMTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp CEEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 346999999999931 357999999999999999999999999999999999999999875432 23469
Q ss_pred EEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 187 AYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 187 ~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
|||+|++.+| ..||+|||.|+. ..+ .+++.++++..++.+..+..| .+|||||||||+|||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalAr 158 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALAR 158 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 9999999987 469999999862 122 245666777777765544433 589999999999999
Q ss_pred HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 259 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 259 al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
||+.+|++||||||||+||+..++.+.+.+.+... .|.|+|+|||+++++. .||+|++|++|++++.|+++++..+.
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999886655433 3899999999999875 59999999999999999999987653
No 88
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-39 Score=372.75 Aligned_cols=203 Identities=27% Similarity=0.337 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+. +++|+|+||++++|++++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEE
Confidence 4899999999952 57999999999999999999999999999999999999999875432 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
|+|++.+| ..||+|||.|+... . .+++.++++..+|.+..+..| .+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999988 56999999987432 1 245677788888766554443 58999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+.+|++||||||||+||+..++.+.+.+.+... .|.|+|+|||+++++. .||+|++|++|++++.|+++++..+.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999887655433 3899999999999874 69999999999999999999987653
No 89
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.9e-39 Score=371.70 Aligned_cols=203 Identities=26% Similarity=0.358 Sum_probs=172.1
Q ss_pred cEEEEeEEEEeCCCCCCC--ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------------
Q 001189 119 AISIRNGYFSWDSKAERP--TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 181 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~--~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------- 181 (1128)
.++++|++++|+. ++ +|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 4899999999963 56 999999999999999999999999999999999999999875421
Q ss_pred ecCcEEEEecCCCCCc-ccHHHHHhcCCCC---C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 001189 182 IRGTVAYVPQVSWIFN-ATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 253 (1128)
Q Consensus 182 ~~~~i~~v~Q~~~l~~-~Tv~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqR 253 (1128)
.++.||||+|++.+|. .||+|||.|+... . .+++.++++..+|.+..+..| .+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 1346999999999884 6999999987431 2 245666777777765544433 5899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHH
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
|+|||||+.+|++||||||||+||+..++.+.+.+.+... .|+|+|+|||+++++. .||+|++|++|++++.|+++++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999887655433 3899999999999875 5999999999999999999998
Q ss_pred hhcc
Q 001189 332 SNNG 335 (1128)
Q Consensus 332 ~~~~ 335 (1128)
..+.
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 7654
No 90
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.5e-39 Score=372.23 Aligned_cols=203 Identities=25% Similarity=0.349 Sum_probs=168.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+. +++|+|+||++++|++++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence 5999999999962 57999999999999999999999999999999999999999875432 1245999
Q ss_pred EecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
|+|++.+| ..||+|||.|+.. ... +++.++++..+|.+..+..| .+|||||||||+|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999987 5799999999743 222 34666777777765554444 58999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC-CcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
+.+|++||||||||+||+..++.+.+.+.+...+ |.|+|+|||+++++. .||+|++|++|++++.|+++++..+.
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999998876554333 899999999998864 69999999999999999999987653
No 91
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-39 Score=372.76 Aligned_cols=202 Identities=29% Similarity=0.376 Sum_probs=169.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 188 (1128)
.++++|++++|+ ++++|+|+||++++|++++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE
Confidence 489999999995 257999999999999999999999999999999999999999875432 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 001189 189 VPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 260 (1128)
Q Consensus 189 v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal 260 (1128)
|+|++.+| ..||+|||.|+. ... .+++.++++..++.+..+. ...+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR-----------YPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 99999988 469999999862 122 2345566676666543333 3358999999999999999
Q ss_pred ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 261 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 261 ~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
+.+|++||||||||+||+..++.+.+.+.+... .|.|+|+|||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999887655433 3899999999998864 6999999999999999999998754
No 92
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2e-39 Score=353.36 Aligned_cols=198 Identities=23% Similarity=0.354 Sum_probs=163.6
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
++++|++++|+. +|+|+||++++ ++++|+||||||||||+++|+|+++|++|.+.. .+..|||+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 689999999952 59999999999 999999999999999999999999998875432 13469999
Q ss_pred ecCCCCCc-ccHHHHHhcCCCC-C----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 190 PQVSWIFN-ATVRDNILFGSAF-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 190 ~Q~~~l~~-~Tv~eni~~g~~~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
||++.++. .||+||+.++... . .+++.++++..++.+.. .....+||||||||++|||||+.+
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHHHHcC
Confidence 99998875 5999999987432 1 23344555555554322 233468999999999999999999
Q ss_pred CCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhc
Q 001189 264 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 334 (1128)
Q Consensus 264 ~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 334 (1128)
|+++||||||++||+.+++.+++.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999986654433 3899999999999875 5999999999999999999887643
No 93
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.4e-39 Score=369.46 Aligned_cols=201 Identities=28% Similarity=0.394 Sum_probs=170.2
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEE
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 189 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 189 (1128)
++++|++++|+ ++ +|+|+||++++|++++|+|||||||||||++|+|+++|++|.+.. .++.||||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 78999999995 25 999999999999999999999999999999999999999875432 12359999
Q ss_pred ecCCCCCc-ccHHHHHhcCCC----CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 190 PQVSWIFN-ATVRDNILFGSA----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 190 ~Q~~~l~~-~Tv~eni~~g~~----~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
+|++.+|. .||+|||.|+.. ...+++.++++..+|.+..+.. ..+|||||||||+|||||+.+|
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN-----------PLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC-----------GGGSCHHHHHHHHHHHHTTSCC
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHHHHHHHcCC
Confidence 99999985 699999998621 1225677777777776544333 3589999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHhhcc
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 335 (1128)
++||||||||+||+..++.+.+.+.+... .|+|+|+|||+++++. .||+|++|++|++++.|+++++..+.
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999887655433 4899999999998864 59999999999999999999987653
No 94
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2e-39 Score=361.05 Aligned_cols=203 Identities=22% Similarity=0.304 Sum_probs=167.1
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ec
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 183 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~ 183 (1128)
+.++++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. ++
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 36999999999963 57999999999999999999999999999999999999998875421 13
Q ss_pred CcEEEEecCCCC-Ccc--cHHHHHhcCCC--------CCH---HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChH
Q 001189 184 GTVAYVPQVSWI-FNA--TVRDNILFGSA--------FEP---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 249 (1128)
Q Consensus 184 ~~i~~v~Q~~~l-~~~--Tv~eni~~g~~--------~~~---~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGG 249 (1128)
..|+|++|++.+ +.. ||+|||.++.. ... +++.++++..++.+.. .....+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG 165 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-----------QQYIGYLSTG 165 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHH
Confidence 469999999865 444 99999998631 122 2345556666654332 2344689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEE--EEEccCccchh-cCCEEEEEeCCeEeeec
Q 001189 250 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR--VLVTNQLHFLS-QVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 250 QkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tv--ilvtH~~~~l~-~~d~i~~l~~G~i~~~g 326 (1128)
|||||+|||||+.+|++|||||||++||+.+++.+++.+.....+|+|+ |+|||+++.+. .||+|++|++|++++.|
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999998665443348899 99999999875 58999999999999999
Q ss_pred ChhHHhhc
Q 001189 327 TFEDLSNN 334 (1128)
Q Consensus 327 ~~~~l~~~ 334 (1128)
+++++...
T Consensus 246 ~~~~~~~~ 253 (279)
T 2ihy_A 246 AVEDILTS 253 (279)
T ss_dssp EHHHHCSH
T ss_pred CHHHHhcc
Confidence 99888643
No 95
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.7e-39 Score=370.70 Aligned_cols=202 Identities=24% Similarity=0.389 Sum_probs=170.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------e
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 182 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~ 182 (1128)
.++++|++++|+. +++|+|+||++++|++++|+|||||||||||++|+|+++|++|.+.. .
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 4899999999952 57999999999999999999999999999999999999999875421 1
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 183 RGTVAYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
++.||||+|++.+| ..||+|||.|+. ... .+++.++++..+|.+..+..| .+|||||||||
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRv 148 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRV 148 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHHHH
Confidence 24699999999987 579999999862 122 234566777777765444333 58999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc-CCcEEEEEccCccchh-cCCEEEEEeCCeEeeecChhHHh
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
+|||||+.+|++||||||||+||+..++.+.+.+.+... .|.|+|+|||+++++. .||+|++|++|++++.|+++++.
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999886655433 3899999999999875 59999999999999999999987
Q ss_pred hc
Q 001189 333 NN 334 (1128)
Q Consensus 333 ~~ 334 (1128)
.+
T Consensus 229 ~~ 230 (372)
T 1g29_1 229 DK 230 (372)
T ss_dssp HS
T ss_pred hC
Confidence 54
No 96
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.6e-39 Score=350.41 Aligned_cols=196 Identities=19% Similarity=0.261 Sum_probs=167.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 186 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 186 (1128)
.++++|++|+ ++|+|+||++++|++++|+||||||||||+++|+|+++|+ |.+.. ++..|
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4889999985 5899999999999999999999999999999999999998 75432 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC--CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 001189 187 AYVPQVSWIFN-ATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 263 (1128)
Q Consensus 187 ~~v~Q~~~l~~-~Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~ 263 (1128)
+|++|++.++. .||+||+.++.. .+.+++.++++..++.+..+ ....+||||||||++|||||+.+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcC
Confidence 99999998874 699999998742 13566777888877765432 33468999999999999999999
Q ss_pred CC-------EEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccch-hcCCEEEEEeCCeEeeecChhHHhh
Q 001189 264 SD-------VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 264 ~~-------illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
|+ +|||||||++||+.+.+.+++.+.....+|+|+|++||+++.+ ..||++++|++|++++.|+++++..
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 9999999999999999999986655444589999999999998 4699999999999999999988865
No 97
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.1e-38 Score=344.47 Aligned_cols=198 Identities=20% Similarity=0.229 Sum_probs=156.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC--CCCCCCCcee-------------ec
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE--LPPVSDASAV-------------IR 183 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~--~~~~~g~~~~-------------~~ 183 (1128)
.++++|++|+|+. +++|+|+||++++|++++|+||||||||||+++|+|+ ++|++|.+.. .+
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 4899999999962 5799999999999999999999999999999999998 7787765422 12
Q ss_pred CcEEEEecCCCCCc-ccHHHHHhcCC------CCC----HHHHHHHHHHhCcH-HHHhcCCCCCcccccCCCCC-CChHH
Q 001189 184 GTVAYVPQVSWIFN-ATVRDNILFGS------AFE----PARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVN-ISGGQ 250 (1128)
Q Consensus 184 ~~i~~v~Q~~~l~~-~Tv~eni~~g~------~~~----~~~~~~~~~~~~l~-~~~~~l~~g~~t~vg~~g~~-LSGGQ 250 (1128)
..++|++|+|.+|. .||+||+.++. ... .+++.++++..++. +..+. ...+ |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSR-----------YLNEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGS-----------BTTCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcC-----------CcccCCCHHH
Confidence 34899999999875 69999997642 111 12344555555552 22222 2245 99999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc--CCEEEEEeCCeEeeecCh
Q 001189 251 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ--VDRIILVHEGMVKEEGTF 328 (1128)
Q Consensus 251 kqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~g~~ 328 (1128)
||||+|||||+.+|+++|||||||+||+.+++.+++.+.....+|+|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999998665443468999999999999875 599999999999999998
Q ss_pred hH
Q 001189 329 ED 330 (1128)
Q Consensus 329 ~~ 330 (1128)
+.
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 98
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.4e-38 Score=346.95 Aligned_cols=197 Identities=23% Similarity=0.298 Sum_probs=164.7
Q ss_pred EEEEeEEEEeCCC-CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------ecCcEE-E
Q 001189 120 ISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVA-Y 188 (1128)
Q Consensus 120 i~~~~~~f~~~~~-~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~-~ 188 (1128)
++++|++++|+.. ..+++|+++||+++ |++++|+||||||||||+++|+|++ |++|.+.. .+..|+ |
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 7899999999631 01479999999999 9999999999999999999999999 98875432 134699 9
Q ss_pred EecCCCCCcccHHHHHhcCC---CCCHHHHHHHHHHhCcH-HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 189 VPQVSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 189 v~Q~~~l~~~Tv~eni~~g~---~~~~~~~~~~~~~~~l~-~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
+||++.+ ..||+||+.++. ..+.+++.++++..++. +. .+....+||||||||++|||||+.+|
T Consensus 80 v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 80 LPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-----------LRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp CGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGG-----------GGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred eCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhH-----------hcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 9999998 999999998752 23456666777776665 32 33445689999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchh-cCC-EEEEEeCCeEeeecChhHHhh
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVD-RIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d-~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
++|||||||++||+.+++++++.+... . . |+|++||+++++. .|| ++++|++|++++.|+++++.+
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~-~-~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEY-G-K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHS-C-S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHh-c-C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999865433 2 2 9999999999875 589 999999999999999988754
No 99
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=8.7e-38 Score=346.21 Aligned_cols=202 Identities=19% Similarity=0.258 Sum_probs=159.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC--CCCCCCCcee----e---------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE--LPPVSDASAV----I--------- 182 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~--~~~~~g~~~~----~--------- 182 (1128)
+.++++|++|+|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|.+.. +
T Consensus 19 ~~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 19 HMLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp -CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred ceEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 4699999999995 35799999999999999999999999999999999998 4677665422 0
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC----------CCCH----HHHHHHHHHhCcHHHHhcCCCCCcccccCCCC-CC
Q 001189 183 RGTVAYVPQVSWIF-NATVRDNILFGS----------AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NI 246 (1128)
Q Consensus 183 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~----------~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~-~L 246 (1128)
+..|+|++|+|.++ ..|++||+.++. ..+. +++.++++..++... ....... +|
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~~L 165 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED----------LLTRSVNVGF 165 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTT----------TTTSBTTTTC
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChh----------HhcCCcccCC
Confidence 12399999999887 459999986531 0122 223344444443211 1112223 59
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc--CCEEEEEeCCeEee
Q 001189 247 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ--VDRIILVHEGMVKE 324 (1128)
Q Consensus 247 SGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~ 324 (1128)
||||||||+|||||+.+|++|||||||++||+.+.+.+++.+.....+|+|+|+|||+++.+.. ||+|++|++|++++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998665444458999999999999875 79999999999999
Q ss_pred ecChhHHh
Q 001189 325 EGTFEDLS 332 (1128)
Q Consensus 325 ~g~~~~l~ 332 (1128)
.|+++++.
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 99987653
No 100
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-37 Score=333.18 Aligned_cols=188 Identities=18% Similarity=0.318 Sum_probs=152.7
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-------ecCcEEEEe
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVP 190 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~ 190 (1128)
..++++|++++|+ + ++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+|+|
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEEC
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEe
Confidence 3699999999995 2 6999999999999999999999999999999999999998875432 234699999
Q ss_pred cCCCCCc-ccHHHHHhcCC-----CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 191 QVSWIFN-ATVRDNILFGS-----AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 191 Q~~~l~~-~Tv~eni~~g~-----~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
|+|.+|. .||+||+.++. ..+.+++.++++..++.+ . +....+||||||||++|||||+.+|
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~-~~~~~~LSgGqkqrv~laraL~~~p 152 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-----------L-KKKLGELSQGTIRRVQLASTLLVNA 152 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-----------T-TSBGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-----------C-CCChhhCCHHHHHHHHHHHHHHhCC
Confidence 9999875 59999998752 122455666666655432 2 3445789999999999999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhc-CCEEEEEeCCeE
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 322 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 322 (1128)
+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 153 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 9999999999999999999998665443358999999999999876 46655 445554
No 101
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.98 E-value=8.4e-35 Score=353.55 Aligned_cols=169 Identities=13% Similarity=0.048 Sum_probs=120.7
Q ss_pred EEEEEEEEEeCCCCCCceeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 744 IKFEDVVLRYRPELPPVLHGL-SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~v-sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
++.+++++.|+. |+.+ +..|++|++++|+|+||||||||++.++|...|. |. +.+.
T Consensus 258 ~~~~~l~~g~~~-----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVR-----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHH-----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHH-----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 344566655531 3322 4489999999999999999999999999998885 53 1144
Q ss_pred EEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 823 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 823 ~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
+++|++. .+++.+...+. .+ + .++.. .|+..........|||||+||+++||++..+|++|
T Consensus 315 ~~~ee~~---~~l~~~~~~~g-~~---~---------~~~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~ll 375 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSWG-MD---F---------EEMER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARI 375 (525)
T ss_dssp EESSSCH---HHHHHHHHTTS-CC---H---------HHHHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEeCCH---HHHHHHHHHcC-CC---H---------HHHHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEE
Confidence 5566652 13333321111 11 1 11111 22222233334579999999999999999999999
Q ss_pred EEeccccCCCHH-----HHHHHHHHHHHHc-CCcEEEEeecCc----------hhhhh-cCEEEEEeCCE
Q 001189 903 VLDEATAAVDVR-----TDALIQKTIREEF-KSCTMLIIAHRL----------NTIID-CDRILLLDSGR 955 (1128)
Q Consensus 903 lLDEpTs~lD~~-----t~~~i~~~l~~~~-~~~Tvi~vtH~l----------~~~~~-~D~i~vl~~G~ 955 (1128)
||| ||++||.. ..+.+.+.++.+. .++|+|+|+|+. ..+.. ||+|++|++|+
T Consensus 376 ilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 376 AID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999 99999998 8888888887754 579999999998 66766 99999999887
No 102
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=3.9e-32 Score=332.33 Aligned_cols=200 Identities=21% Similarity=0.241 Sum_probs=162.8
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCC-C
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI-F 196 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l-~ 196 (1128)
..++++|+++.|+. ..|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. +..|||+||++.+ +
T Consensus 356 ~~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-~~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-DLTVAYKPQYIKAEY 430 (607)
T ss_dssp EEEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-CCCEEEECSSCCCCC
T ss_pred eEEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-eeEEEEEecCccCCC
Confidence 36899999999952 4799999999999999999999999999999999999999876543 6679999999876 5
Q ss_pred cccHHHHHhcC-C-CC-CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 001189 197 NATVRDNILFG-S-AF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273 (1128)
Q Consensus 197 ~~Tv~eni~~g-~-~~-~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt 273 (1128)
+.||.||+... . .+ +.++..++++..++.+. ......+|||||||||+|||||+.+|++|||||||
T Consensus 431 ~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt 499 (607)
T 3bk7_A 431 EGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-----------YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499 (607)
T ss_dssp SSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred CCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 78999998753 1 01 12333444444444321 22334689999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeC--CeEeeecChhHHhh
Q 001189 274 SALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDLSN 333 (1128)
Q Consensus 274 s~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l~~ 333 (1128)
++||+.+.+.+++.+.... ..|+|+|+|||+++++.. ||+|++|++ |++...|+++++..
T Consensus 500 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 500 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999988654432 358999999999999874 899999986 88888899888764
No 103
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=3.2e-32 Score=329.95 Aligned_cols=200 Identities=20% Similarity=0.232 Sum_probs=161.4
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCC-C
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI-F 196 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l-~ 196 (1128)
+.++++|+++.|.. ..|+++||++++||+++|+||||||||||+++|+|+++|++|.+. ++..|+|+||++.. +
T Consensus 286 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~-~~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE-WDLTVAYKPQYIKADY 360 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC-CCCCEEEECSSCCCCC
T ss_pred eEEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECceEEEEecCCcCCC
Confidence 46899999999952 479999999999999999999999999999999999999987655 36679999999876 5
Q ss_pred cccHHHHHhcC-C-C-CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 001189 197 NATVRDNILFG-S-A-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273 (1128)
Q Consensus 197 ~~Tv~eni~~g-~-~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt 273 (1128)
+.||.||+... . . .+.++..++++..++.+ .......+|||||||||+|||||+.+|++|||||||
T Consensus 361 ~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 361 EGTVYELLSKIDASKLNSNFYKTELLKPLGIID-----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp SSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGG-----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred CCcHHHHHHhhhccCCCHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 78999988642 1 0 11222333333333322 223445689999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchh-cCCEEEEEeC--CeEeeecChhHHhh
Q 001189 274 SALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHE--GMVKEEGTFEDLSN 333 (1128)
Q Consensus 274 s~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~--G~i~~~g~~~~l~~ 333 (1128)
++||+.+.+.+++.+.... ..|+|+|+|||+++++. .||+|++|++ |++...|+++++..
T Consensus 430 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 430 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999998654433 34899999999999987 4899999986 78888899887754
No 104
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=4.2e-31 Score=332.77 Aligned_cols=195 Identities=20% Similarity=0.253 Sum_probs=161.0
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceE
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 822 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 822 (1128)
.+...|++++|++ .++|+|+||+|++||++||+||||||||||+++|.| |+| +|.+... +.+++
T Consensus 435 ~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~~ 498 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRTV 498 (986)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCEE
T ss_pred eeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeEE
Confidence 5888899999964 369999999999999999999999999999999995 554 5544321 12478
Q ss_pred EEcCCC-ccc-cccHhhcccc-CCCCCHHHHHHHHHHhcH-HHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 823 IIPQSP-VLF-SGTVRFNLDP-FSEHSDADLWEALERAHL-KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 823 ~v~Q~~-~lf-~~Tv~~nl~~-~~~~~~~~i~~~l~~~~l-~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
|++|++ .++ ..|+.+|+.. .... ++++.++++..++ .+...+ ...+||||||||++|||||+.+
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~-----------~~~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAM-----------PISALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHS-----------BGGGCCHHHHHHHHHHHHHHTT
T ss_pred EEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcC-----------CcccCCHHHHHHHHHHHHHhcC
Confidence 999986 444 4599999864 1111 5667777777766 333332 2357999999999999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh-cCEEEEEeCCEEE-EecChhHHhh
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLS 967 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~-~~g~~~~l~~ 967 (1128)
|+||||||||++||+.+.+.+.+.|++ .++|+|+|||+++++.. ||+|++|++|+++ ..|++++++.
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999998 68999999999999987 9999999999997 5799999874
No 105
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=8.9e-32 Score=325.06 Aligned_cols=200 Identities=19% Similarity=0.251 Sum_probs=161.5
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCC-C
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI-F 196 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l-~ 196 (1128)
+.++++|+++.|+. ..|+++||++++||+++|+||||||||||+++|+|+++|++|.+......++|+||++.. +
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY 343 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCC
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhccccc
Confidence 35889999999962 578899999999999999999999999999999999999998876666679999999765 5
Q ss_pred cccHHHHHhcCCC----CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCc
Q 001189 197 NATVRDNILFGSA----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 272 (1128)
Q Consensus 197 ~~Tv~eni~~g~~----~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEp 272 (1128)
..||+||+.+... .......++++..++.+. ......+|||||||||+|||||+.+|+|||||||
T Consensus 344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-----------LESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-----------TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 7899999976321 122334444555554432 2334468999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeC--CeEeeecChhHHh
Q 001189 273 LSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDLS 332 (1128)
Q Consensus 273 ts~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l~ 332 (1128)
|++||+.+...+++.+.... ..|+|+|+||||++++.. ||||++|++ |.+...+++.++.
T Consensus 413 T~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999988655443 358999999999999875 999999986 5556666665543
No 106
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=1.2e-31 Score=335.09 Aligned_cols=204 Identities=24% Similarity=0.346 Sum_probs=138.1
Q ss_pred CCceeeeeEEEcCCcEEEEECCCCCCHHHHH---------------------HHHhcCCCCC-------CceEEECCEec
Q 001189 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSML---------------------NTLFRIVELE-------RGRILIDGFDI 809 (1128)
Q Consensus 758 ~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll---------------------~~l~g~~~p~-------~G~I~i~g~~i 809 (1128)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3699999999999999999999999999998 8899999998 55666776655
Q ss_pred CCCChHHhhhceEEEcCCCccc--------------------cccHhhccccCCCC--C--HHH-----HHHHHHHhcHH
Q 001189 810 AKFGLMDLRKILGIIPQSPVLF--------------------SGTVRFNLDPFSEH--S--DAD-----LWEALERAHLK 860 (1128)
Q Consensus 810 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~Tv~~nl~~~~~~--~--~~~-----i~~~l~~~~l~ 860 (1128)
... .|+.+++++|.+.++ ..|+++|+.++... . +.+ ..++++..
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 432 244566666654332 34889998754211 1 111 11111111
Q ss_pred HHHHHccCCcchh-hhcCCCCCChhHHHHHHHHHHhccCCC--EEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEee
Q 001189 861 DAIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIA 936 (1128)
Q Consensus 861 ~~i~~lp~Gldt~-v~e~g~~LSgGqrqrl~lArall~~p~--iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vt 936 (1128)
+.++.+ |++.. ......+||||||||++|||||+.+|+ ||||||||++||+.+...+.+.|+++. +++|||+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 123332 44322 234456799999999999999999988 999999999999999999999998864 579999999
Q ss_pred cCchhhhhcCEEEEE------eCCEEEEecChhHHhhcCC
Q 001189 937 HRLNTIIDCDRILLL------DSGRVLEYDTPEELLSNEG 970 (1128)
Q Consensus 937 H~l~~~~~~D~i~vl------~~G~i~~~g~~~~l~~~~~ 970 (1128)
|+++.+..||||++| ++|++++.|+++++.+...
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999988889999999 8999999999999987654
No 107
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.5e-31 Score=323.13 Aligned_cols=198 Identities=22% Similarity=0.305 Sum_probs=161.1
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCC-----CEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCC-C
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVG-----SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI-F 196 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G-----~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l-~ 196 (1128)
++++|+|+. .+.+++++||++++| |+++|+||||||||||+++|+|+++|++|.. ..+..++|+||++.. |
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IPKLNVSMKPQKIAPKF 426 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-CCSCCEEEECSSCCCCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-ccCCcEEEecccccccC
Confidence 567888863 235899999999998 7899999999999999999999999998863 334569999999764 6
Q ss_pred cccHHHHHhcC---CCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 001189 197 NATVRDNILFG---SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273 (1128)
Q Consensus 197 ~~Tv~eni~~g---~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt 273 (1128)
..||++|+... ...+.+...++++..++.+.. .....+|||||||||+|||||+.+|+||||||||
T Consensus 427 ~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 427 PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII-----------DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTS-----------SSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred CccHHHHHHHHhhcccccHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 78999998642 122344455566666554322 2344689999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeC--CeEeeecChhHHhhc
Q 001189 274 SALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDLSNN 334 (1128)
Q Consensus 274 s~LD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 334 (1128)
++||+.+...+++.+.+.. ..|+|+|+|||+++++.. ||||++|++ |+++..|+++++.+.
T Consensus 496 ~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 496 AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999987654433 358999999999999875 899999986 899999999998764
No 108
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.96 E-value=3.1e-34 Score=320.85 Aligned_cols=235 Identities=15% Similarity=0.094 Sum_probs=185.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCCcEEEEeEEEEeCCC
Q 001189 53 LGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSK 132 (1128)
Q Consensus 53 ~~~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~ 132 (1128)
..+..+-+.+.+++.+.++ ..|+..+...+..+..+.++..||.++++.+++...+.....+....|+++|++|+|+
T Consensus 36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~-- 112 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF-- 112 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH--
T ss_pred HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC--
Confidence 3445566788888877666 4799999999999999999999999999876532211111000012488999999996
Q ss_pred CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHH-HHhcCCCCC
Q 001189 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRD-NILFGSAFE 211 (1128)
Q Consensus 133 ~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~e-ni~~g~~~~ 211 (1128)
+++|+++||+|++|++++|+||||||||||+++|+|++ +|.+ ++|++|++++|.+|+++ ||.++...+
T Consensus 113 --~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------~~~v~q~~~lf~~ti~~~ni~~~~~~~ 181 (305)
T 2v9p_A 113 --INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------LSFANHKSHFWLASLADTRAALVDDAT 181 (305)
T ss_dssp --HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------ECGGGTTSGGGGGGGTTCSCEEEEEEC
T ss_pred --hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------EEEecCccccccccHHHHhhccCcccc
Confidence 46999999999999999999999999999999999998 4543 57899999999999998 999874333
Q ss_pred HHHHHHHHHHhCcHHHHhc-CCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHc
Q 001189 212 PARYEKAIDVTSLQHDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290 (1128)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~~-l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~ 290 (1128)
+ . +.+.++. +|+|++ |.+|||||||| ||||+++|+||| ||+||+.+++.+..
T Consensus 182 ~-~---------~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---- 234 (305)
T 2v9p_A 182 H-A---------CWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---- 234 (305)
T ss_dssp H-H---------HHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----
T ss_pred H-H---------HHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----
Confidence 2 1 2334554 676654 67999999999 999999999999 99999998877641
Q ss_pred cccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhhcchHHHHHH
Q 001189 291 GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 342 (1128)
Q Consensus 291 ~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 342 (1128)
+||+++.+..||+| +|++|++++.|+++++ .+.|++++
T Consensus 235 ----------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~ 272 (305)
T 2v9p_A 235 ----------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLW 272 (305)
T ss_dssp ----------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHST
T ss_pred ----------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHH
Confidence 29999999999999 9999999999999998 45565554
No 109
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.96 E-value=7.5e-34 Score=317.76 Aligned_cols=205 Identities=15% Similarity=0.166 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccccCCCCCCCCCCC-CccEEEEEEEEEeCCCCCCceeeeeEEEcCCc
Q 001189 694 LLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS-SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSD 772 (1128)
Q Consensus 694 ~~~~~~~~~~~~e~~~~a~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~-~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge 772 (1128)
++..+...+........+.+|+.++++.+.+... ....|+. .+.|+++||+|+|+ .++|+++||+|++|+
T Consensus 57 ~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~------~~~~~~~~~~~i~~~~vs~~y~---~~vL~~vsl~i~~Ge 127 (305)
T 2v9p_A 57 HVKDCATMVRHYLRAETQALSMPAYIKARCKLAT------GEGSWKSILTFFNYQNIELITF---INALKLWLKGIPKKN 127 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC------SSCCTHHHHHHHHHTTCCHHHH---HHHHHHHHHTCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC------CCCcccccCCeEEEEEEEEEcC---hhhhccceEEecCCC
Confidence 3444444555566677888899888865432110 1112432 24599999999996 379999999999999
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhh-ccccCCCCCHHHHH
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF-NLDPFSEHSDADLW 851 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~-nl~~~~~~~~~~i~ 851 (1128)
+++|+||||||||||+++|+|++ +|+| +++++|++.+|.+|+++ |+.+....++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~~~~~~---- 182 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALVDDATH---- 182 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEEEEECH----
T ss_pred EEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccCccccH----
Confidence 99999999999999999999999 8988 35789999999999998 8876533332
Q ss_pred HHHHHhcHHHHHHH-ccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCc
Q 001189 852 EALERAHLKDAIRR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 930 (1128)
Q Consensus 852 ~~l~~~~l~~~i~~-lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~ 930 (1128)
+++++++. +|.|++ |.+|||||||| |||++++|+||| ||+||+.+++.|..
T Consensus 183 ------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------- 234 (305)
T 2v9p_A 183 ------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------- 234 (305)
T ss_dssp ------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred ------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence 34566776 788887 67899999999 999999999999 99999999988862
Q ss_pred EEEEeecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 001189 931 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 931 Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l 965 (1128)
+|||++.+..||+| +|++|+|++.|+++++
T Consensus 235 ----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 ----LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ----GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred ----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 39999999889999 9999999999999999
No 110
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=1.1e-28 Score=291.72 Aligned_cols=200 Identities=17% Similarity=0.180 Sum_probs=148.2
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--------------------------------------CCCc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--------------------------------------LERG 800 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~--------------------------------------p~~G 800 (1128)
.++++++|++.+| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 999999999999999999976653 4578
Q ss_pred eEEECCEecCCCChHHhhhc-eEEEcCCCccccccHhhccccCCCCCH---HHHH-------------------------
Q 001189 801 RILIDGFDIAKFGLMDLRKI-LGIIPQSPVLFSGTVRFNLDPFSEHSD---ADLW------------------------- 851 (1128)
Q Consensus 801 ~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~Tv~~nl~~~~~~~~---~~i~------------------------- 851 (1128)
++++||.+++..++.+++.. +++++|++.++-.+..++..+...... ....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999987666777666 899999998775544332221111110 0000
Q ss_pred -------------HHHHH-----------------hcHHHHHHHcc------------------CCcch---hhhcCCCC
Q 001189 852 -------------EALER-----------------AHLKDAIRRNS------------------LGLDA---QVSEAGEN 880 (1128)
Q Consensus 852 -------------~~l~~-----------------~~l~~~i~~lp------------------~Gldt---~v~e~g~~ 880 (1128)
+.+.. ..+.+.+..+. .|++. .+..++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 00000 00111122211 11111 22333333
Q ss_pred --------CChhHHHHHHHHHHhccCC--CEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEE
Q 001189 881 --------FSVGQRQLLSLSRALLRRS--KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILL 950 (1128)
Q Consensus 881 --------LSgGqrqrl~lArall~~p--~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~v 950 (1128)
||||||||++|||+|+.+| +||||||||++||+.+...|.+.|+++.+++|||+|||+++.+..||++++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 8999999999999999999 999999999999999999999999998778999999999988877999999
Q ss_pred E----eCCEEEEe
Q 001189 951 L----DSGRVLEY 959 (1128)
Q Consensus 951 l----~~G~i~~~ 959 (1128)
| ++|+++..
T Consensus 368 l~k~~~~G~~~~~ 380 (415)
T 4aby_A 368 VEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEeccCCceEEE
Confidence 9 99998765
No 111
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.1e-31 Score=311.62 Aligned_cols=189 Identities=12% Similarity=0.063 Sum_probs=152.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-e-EEECCEecCCCChHHhhhc
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-R-ILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G-~-I~i~g~~i~~~~~~~~r~~ 820 (1128)
.++++||+++|+ ++||++++|++++|+||||||||||+++|+|++.|++| + |.+|| + .|+.
T Consensus 118 mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 467777777773 79999999999999999999999999999999999999 9 99998 1 3678
Q ss_pred eEEEcCCCcccc----ccHhhccccCCCC-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 821 LGIIPQSPVLFS----GTVRFNLDPFSEH-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 821 i~~v~Q~~~lf~----~Tv~~nl~~~~~~-----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
++++||++.+|. .|+++|+ +.... .++.+.++++. .|++.... ..+|||||||||+|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~-----------~gl~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKN-----------FGLERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECC-----------CCSSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHH-----------hCCCcccc--hhhhhHHHHHHHHH
Confidence 999999996543 3899898 43221 11111112222 35544443 56799999999999
Q ss_pred HHH--hccCCCE----EEEec-cccCCCHHHHHHHHHHHHHHcCCcEEEEeecCch------hhhh-cCE-----EEEEe
Q 001189 892 SRA--LLRRSKI----LVLDE-ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN------TIID-CDR-----ILLLD 952 (1128)
Q Consensus 892 Ara--ll~~p~i----LlLDE-pTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~------~~~~-~D~-----i~vl~ 952 (1128)
||| |+.+|++ ||||| ||++||+. .+.+.+.+++ .+.|+|+|+|+.+ .+.. ||| |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~--~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK--LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH--TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH--hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 7778887776 3789999999987 5555 999 99999
Q ss_pred -CCEEEEecChhHHh
Q 001189 953 -SGRVLEYDTPEELL 966 (1128)
Q Consensus 953 -~G~i~~~g~~~~l~ 966 (1128)
+|+++ .|+++++.
T Consensus 324 k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 324 KLDGVS-AVDDVYKR 337 (460)
T ss_dssp CCTTCC-CCCHHHHH
T ss_pred CCCcEE-ECCHHHHh
Confidence 99999 99998874
No 112
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=5.3e-27 Score=295.77 Aligned_cols=102 Identities=24% Similarity=0.446 Sum_probs=91.1
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEE
Q 001189 238 EIGERGVNISGGQKQRVSMARAVYSNS---DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 314 (1128)
Q Consensus 238 ~vg~~g~~LSGGQkqRiaLARal~~~~---~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 314 (1128)
.+|..+.+|||||||||+|||||+++| +||||||||++||+.+.+.+++.+.+...+|+|+|+|||+++++..||+|
T Consensus 798 ~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrI 877 (916)
T 3pih_A 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHI 877 (916)
T ss_dssp BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEE
Confidence 367788999999999999999999875 79999999999999999999986655445699999999999999999999
Q ss_pred EEE------eCCeEeeecChhHHhhcchHHH
Q 001189 315 ILV------HEGMVKEEGTFEDLSNNGELFQ 339 (1128)
Q Consensus 315 ~~l------~~G~i~~~g~~~~l~~~~~~~~ 339 (1128)
++| ++|+|+++|+++++.++...|.
T Consensus 878 ivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt 908 (916)
T 3pih_A 878 IDLGPEGGKEGGYIVATGTPEEIAKNPHSYT 908 (916)
T ss_dssp EEEESSSGGGCCEEEEEESHHHHHSCTTCHH
T ss_pred EEecCCCCCCCCEEEEEcCHHHHHhCCchHH
Confidence 999 8999999999999988765543
No 113
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.93 E-value=3.6e-26 Score=285.94 Aligned_cols=97 Identities=19% Similarity=0.414 Sum_probs=87.1
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEE
Q 001189 239 IGERGVNISGGQKQRVSMARAVYSN---SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 315 (1128)
Q Consensus 239 vg~~g~~LSGGQkqRiaLARal~~~---~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 315 (1128)
.+....+|||||||||+|||+|+++ |+||||||||++||+...+.+++.+.....+|+|||+|||+++++..||+|+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 4667789999999999999999996 7999999999999999999999866554457999999999999998899999
Q ss_pred EE------eCCeEeeecChhHHhhcc
Q 001189 316 LV------HEGMVKEEGTFEDLSNNG 335 (1128)
Q Consensus 316 ~l------~~G~i~~~g~~~~l~~~~ 335 (1128)
+| ++|+|++.|+++++.+..
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 99 699999999999987654
No 114
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.93 E-value=8.1e-26 Score=282.35 Aligned_cols=99 Identities=26% Similarity=0.419 Sum_probs=87.8
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEE
Q 001189 239 IGERGVNISGGQKQRVSMARAVYSNS---DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 315 (1128)
Q Consensus 239 vg~~g~~LSGGQkqRiaLARal~~~~---~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 315 (1128)
.+....+|||||||||+|||+|+.+| ++|||||||++||+...+.+++.+.....+|+|+|+|||+++++..||+|+
T Consensus 839 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi 918 (972)
T 2r6f_A 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYII 918 (972)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 46667899999999999999999875 999999999999999999999866554456999999999999998899999
Q ss_pred EE------eCCeEeeecChhHHhhcchH
Q 001189 316 LV------HEGMVKEEGTFEDLSNNGEL 337 (1128)
Q Consensus 316 ~l------~~G~i~~~g~~~~l~~~~~~ 337 (1128)
+| ++|+|++.|+++++......
T Consensus 919 vL~p~gG~~~G~Iv~~g~~~el~~~~~~ 946 (972)
T 2r6f_A 919 DLGPEGGDRGGQIVAVGTPEEVAEVKES 946 (972)
T ss_dssp EECSSSTTSCCSEEEEESHHHHHTCTTC
T ss_pred EEcCCCCCCCCEEEEecCHHHHHhCchh
Confidence 99 68999999999999876443
No 115
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.93 E-value=1.1e-25 Score=282.21 Aligned_cols=100 Identities=27% Similarity=0.413 Sum_probs=88.0
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEE
Q 001189 239 IGERGVNISGGQKQRVSMARAVYSNS---DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 315 (1128)
Q Consensus 239 vg~~g~~LSGGQkqRiaLARal~~~~---~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 315 (1128)
.+....+|||||||||+|||+|+++| +||||||||++||+...+.+++.+......|.|+|+|||+++++..||+|+
T Consensus 857 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi 936 (993)
T 2ygr_A 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWII 936 (993)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 45667899999999999999999875 999999999999999999999866554456999999999999998899999
Q ss_pred EE------eCCeEeeecChhHHhhcchHH
Q 001189 316 LV------HEGMVKEEGTFEDLSNNGELF 338 (1128)
Q Consensus 316 ~l------~~G~i~~~g~~~~l~~~~~~~ 338 (1128)
+| ++|++++.|+++++......+
T Consensus 937 vL~p~gg~~~G~Iv~~G~~~el~~~~~~~ 965 (993)
T 2ygr_A 937 DLGPEGGAGGGTVVAQGTPEDVAAVPASY 965 (993)
T ss_dssp EEESSSTTSCSEEEEEECHHHHHHCTTCH
T ss_pred EECCCcCCCCCEEEEecCHHHHHhCCHHH
Confidence 99 689999999999987664433
No 116
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.9e-28 Score=290.28 Aligned_cols=175 Identities=17% Similarity=0.095 Sum_probs=133.5
Q ss_pred eeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC-Cceee----cCcEEEEecCCCCC----cccHHHHHhcCCCC
Q 001189 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD-ASAVI----RGTVAYVPQVSWIF----NATVRDNILFGSAF 210 (1128)
Q Consensus 140 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g-~~~~~----~~~i~~v~Q~~~l~----~~Tv~eni~~g~~~ 210 (1128)
++||++++|++++|+||||||||||+++|+|+++|++| ..+.+ +..++|+||++.+| ..|++||+ |+...
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~ 208 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQSL 208 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-ccccc
Confidence 79999999999999999999999999999999999887 62332 45699999998543 35999999 76432
Q ss_pred -----CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH--HccCCCE----EEEeC-cCCCcCH
Q 001189 211 -----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA--VYSNSDV----FIFDD-PLSALDA 278 (1128)
Q Consensus 211 -----~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa--l~~~~~i----llLDE-pts~LD~ 278 (1128)
+.++..++++..++ .... + ..+|||||||||+|||| |+.+|++ +|||| ||++||+
T Consensus 209 ~~~~~~~~~~~~ll~~~gl-----------~~~~-~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~ 275 (460)
T 2npi_A 209 TSGATLLHNKQPMVKNFGL-----------ERIN-E-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDE 275 (460)
T ss_dssp BSSCCSSCCBCCEECCCCS-----------SSGG-G-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCS
T ss_pred ccCcchHHHHHHHHHHhCC-----------Cccc-c-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccCh
Confidence 00111111111221 1111 2 56899999999999999 9999999 99999 9999999
Q ss_pred HHHHHHHHHHHccccCCcEEEEEccCcc------ch-hcCCE-----EEEEe-CCeEeeecChhHHhh
Q 001189 279 HVGRQVFDRCIRGELSGKTRVLVTNQLH------FL-SQVDR-----IILVH-EGMVKEEGTFEDLSN 333 (1128)
Q Consensus 279 ~~~~~i~~~~~~~~~~~~tvilvtH~~~------~l-~~~d~-----i~~l~-~G~i~~~g~~~~l~~ 333 (1128)
. .+.+.+ +++. .++|+|+|||+.. ++ ..||+ |++|+ +|+++ .|+++++.+
T Consensus 276 ~-~~~l~~-l~~~--~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 276 N-LAELHH-IIEK--LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp S-CHHHHH-HHHH--TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred h-HHHHHH-HHHH--hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 9 555544 3332 3689999999987 44 35899 99999 99999 899887743
No 117
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=7.6e-25 Score=249.72 Aligned_cols=202 Identities=17% Similarity=0.218 Sum_probs=139.3
Q ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC----------------------------------------------
Q 001189 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV---------------------------------------------- 795 (1128)
Q Consensus 762 ~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~---------------------------------------------- 795 (1128)
+++++++.+| +++|+||||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999998443
Q ss_pred ----CCCCceEEECCEecCCCChHHhhhceEEEcCCCccc-cccHhhccccCCCC----------------CHHHHHHHH
Q 001189 796 ----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNLDPFSEH----------------SDADLWEAL 854 (1128)
Q Consensus 796 ----~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~~nl~~~~~~----------------~~~~i~~~l 854 (1128)
.+.+|.+.+||.+++..+...+...+++.||+..++ .+++.+|+...... ..+++.+.+
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334578999999875555556666788889987765 67887776432110 001122221
Q ss_pred HHh------------cHH-HHHHHccCCcchhhh------cCCCCCChhHHHHHHHHHHhc----cCCCEEEEeccccCC
Q 001189 855 ERA------------HLK-DAIRRNSLGLDAQVS------EAGENFSVGQRQLLSLSRALL----RRSKILVLDEATAAV 911 (1128)
Q Consensus 855 ~~~------------~l~-~~i~~lp~Gldt~v~------e~g~~LSgGqrqrl~lArall----~~p~iLlLDEpTs~l 911 (1128)
... .+. ...+.++.|++..++ .....||||||||++|||||+ ++|+||||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 000 001123335544322 223579999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEE--EEEeCCEEE-EecChhH
Q 001189 912 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI--LLLDSGRVL-EYDTPEE 964 (1128)
Q Consensus 912 D~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i--~vl~~G~i~-~~g~~~~ 964 (1128)
|+.+.+.+.+.|++..+++|+|+|||+++.+..||++ ++|.+|+.. .....++
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 9999999999999886688999999998777779987 788877543 3344444
No 118
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=3.3e-27 Score=251.33 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=101.2
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
.+|+|+ ++||++||+||||||||||+++|+|+ +|++|+|. +.++.. +....|+.++|+||++ ++|
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 589986 89999999999999999999999999 99999994 333332 2234678899999997 556
Q ss_pred cc-cCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHH
Q 001189 839 LD-PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917 (1128)
Q Consensus 839 l~-~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~ 917 (1128)
+. +.... ...+........+.+.++. | | |||||++|||||+.+|+||||||||++ +..
T Consensus 79 l~~~~~~~-~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRPL-HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHHH-HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHHH-HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 62 21000 0000000000112222221 1 2 999999999999999999999999999 888
Q ss_pred HHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCC
Q 001189 918 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 954 (1128)
Q Consensus 918 ~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G 954 (1128)
.+.+.|++..+++||| |||+++.+.. +...++|
T Consensus 138 ~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G 170 (208)
T 3b85_A 138 QMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSG 170 (208)
T ss_dssp HHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred HHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCc
Confidence 9999998874478999 9999886653 3334555
No 119
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=9.8e-25 Score=257.74 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=72.6
Q ss_pred CChHHHHHHHHHHHHccCC--CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEE----eC
Q 001189 246 ISGGQKQRVSMARAVYSNS--DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV----HE 319 (1128)
Q Consensus 246 LSGGQkqRiaLARal~~~~--~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l----~~ 319 (1128)
|||||||||+|||+|+.+| ++|||||||++||+.+.+++++.+.... +|.|+|+|||+++++..||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCeEEEEEEeccC
Confidence 7999999999999999999 9999999999999999999998665433 689999999999999889999999 89
Q ss_pred CeEeee
Q 001189 320 GMVKEE 325 (1128)
Q Consensus 320 G~i~~~ 325 (1128)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998754
No 120
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=2.7e-23 Score=240.52 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=75.1
Q ss_pred CCCCCChhHHHHHHHHHHhc------cCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEE
Q 001189 877 AGENFSVGQRQLLSLSRALL------RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRIL 949 (1128)
Q Consensus 877 ~g~~LSgGqrqrl~lArall------~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~ 949 (1128)
...+||||||||++|||||+ ++|++|||||||++||+.+...+.+.|+++. .++|||+|||+++.+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 44579999999999999999 7999999999999999999999999999865 4799999999999977799999
Q ss_pred EEeCCEEEE
Q 001189 950 LLDSGRVLE 958 (1128)
Q Consensus 950 vl~~G~i~~ 958 (1128)
+|++|++++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
No 121
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.89 E-value=3.4e-23 Score=239.63 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=75.3
Q ss_pred CCCCCCChHHHHHHHHHHHHc------cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEE
Q 001189 241 ERGVNISGGQKQRVSMARAVY------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 314 (1128)
Q Consensus 241 ~~g~~LSGGQkqRiaLARal~------~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 314 (1128)
....+||||||||++|||||+ .+|++|||||||++||+.+.+++++.+......|+|+|+|||+++....||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 445689999999999999999 79999999999999999999999986655555689999999999998889999
Q ss_pred EEEeCCeEee
Q 001189 315 ILVHEGMVKE 324 (1128)
Q Consensus 315 ~~l~~G~i~~ 324 (1128)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999874
No 122
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.88 E-value=2.5e-24 Score=222.52 Aligned_cols=149 Identities=17% Similarity=0.208 Sum_probs=107.3
Q ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCc--cccccHhhccc
Q 001189 763 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVRFNLD 840 (1128)
Q Consensus 763 ~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~~Tv~~nl~ 840 (1128)
||||++++||+++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.+++.+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVL- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHH-
Confidence 6899999999999999999999999999653 22222 222333 66777762 1222222111
Q ss_pred cCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHH------
Q 001189 841 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR------ 914 (1128)
Q Consensus 841 ~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~------ 914 (1128)
.. .....+..|+...+... ...|||||||++||||+..+|++|+|||||++||+.
T Consensus 63 --------------~~----~~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 63 --------------HY----IVSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp --------------HH----HHHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred --------------HH----HHHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 11 01112234555555444 347999999999999999999999999999999999
Q ss_pred ----------HHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEE
Q 001189 915 ----------TDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRI 948 (1128)
Q Consensus 915 ----------t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i 948 (1128)
..+.+++.|++.. +|.|+|+|||+++++..++++
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 4577888876543 489999999999999887765
No 123
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.88 E-value=4.6e-24 Score=221.75 Aligned_cols=148 Identities=13% Similarity=0.165 Sum_probs=110.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHH
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 852 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~ 852 (1128)
+++|+||||||||||+++|+|++. |.++|.+.........+++++|++|++ +..+|+.. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~~--~~------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIFS--SK------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEEE--ET-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHHH--hh-------
Confidence 689999999999999999999985 567776654332124577899999987 33444410 00
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH-----hccCCCEEEEec--cccCCCHHHHHHHHHHHHH
Q 001189 853 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA-----LLRRSKILVLDE--ATAAVDVRTDALIQKTIRE 925 (1128)
Q Consensus 853 ~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAra-----ll~~p~iLlLDE--pTs~lD~~t~~~i~~~l~~ 925 (1128)
+ .+ .+..++..+.+||||||||++|||| ++.+|++||||| ||+++|+...+.+.+.+++
T Consensus 63 -----~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 63 -----F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp -----T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred -----c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 0 00 0123455566899999999999996 999999999999 9999999999999999976
Q ss_pred HcCCcEEEEeec---Cchhhhh-cCEEEEEeCCEEEEe
Q 001189 926 EFKSCTMLIIAH---RLNTIID-CDRILLLDSGRVLEY 959 (1128)
Q Consensus 926 ~~~~~Tvi~vtH---~l~~~~~-~D~i~vl~~G~i~~~ 959 (1128)
.+.|+|+++| +++.+.. ||| .+|++++.
T Consensus 129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEe
Confidence 5677888885 7788877 887 56777663
No 124
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.88 E-value=1.9e-24 Score=223.41 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=102.9
Q ss_pred eeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCC--CCcccHHHHHhcCCCCCHHHHHH
Q 001189 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW--IFNATVRDNILFGSAFEPARYEK 217 (1128)
Q Consensus 140 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~--l~~~Tv~eni~~g~~~~~~~~~~ 217 (1128)
|+||++++|++++|+||||||||||++++.+-....++ ..-.++++|++. .+.+++.+++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~-----d~~~g~~~~~~~~~~~~~~~~~~~~~----------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISS-----DFCRGLMSDDENDQTVTGAAFDVLHY----------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEH-----HHHHHHHCSSTTCGGGHHHHHHHHHH-----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEcc-----HHHHHHhcCcccchhhHHHHHHHHHH-----------
Confidence 68999999999999999999999999986542211110 001256667653 223343333321
Q ss_pred HHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHH----------------HH
Q 001189 218 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH----------------VG 281 (1128)
Q Consensus 218 ~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~----------------~~ 281 (1128)
..+ ..+..|..+.+. .-...|||||||++||||+..+|++++|||||++||+. ..
T Consensus 65 ~~~--------~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~ 135 (171)
T 4gp7_A 65 IVS--------KRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHT 135 (171)
T ss_dssp HHH--------HHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHH
T ss_pred HHH--------HHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHH
Confidence 000 001123333332 23456999999999999999999999999999999999 44
Q ss_pred HHHHHHHHccccCCcEEEEEccCccchhcCCEE
Q 001189 282 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 314 (1128)
Q Consensus 282 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 314 (1128)
+.+.+.+.....+|.|+|+|||+++.+..++++
T Consensus 136 ~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 136 QQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred HHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 777765433334589999999999998877664
No 125
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=1.4e-24 Score=231.03 Aligned_cols=146 Identities=17% Similarity=0.134 Sum_probs=92.8
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------ecCcEEEEecCCCCCcccHHHHH-
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVAYVPQVSWIFNATVRDNI- 204 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~~v~Q~~~l~~~Tv~eni- 204 (1128)
+++|+|+ ++|++++|+||||||||||+++|+|+ +|++|.+.. .+..|||+||++ +||+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------~enl~ 80 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------NEKID 80 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------------C
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------HHHHH
Confidence 4688885 89999999999999999999999999 998886532 234699999987 6666
Q ss_pred hcCCCCCHHHHHHHHH---HhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHH
Q 001189 205 LFGSAFEPARYEKAID---VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 281 (1128)
Q Consensus 205 ~~g~~~~~~~~~~~~~---~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~ 281 (1128)
.++.+ .+..... ...+.+.++ . .| |||||++|||||+.+|++|||||||++ +.
T Consensus 81 ~~~~~----~~~~~~~~~~~~~~~~~l~-----------~---gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 81 PYLRP----LHDALRDMVEPEVIPKLME-----------A---GI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp TTTHH----HHHHHTTTSCTTHHHHHHH-----------T---TS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHH----HHHHHHHhccHHHHHHHHH-----------h---CC--chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 34210 0000000 000111111 1 12 999999999999999999999999999 66
Q ss_pred HHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCe
Q 001189 282 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM 321 (1128)
Q Consensus 282 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 321 (1128)
+.+++.+... .+|+|+| |||+++.++. +...++|.
T Consensus 137 ~~l~~~l~~l-~~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 137 AQMKMFLTRL-GFGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHHHHHTTB-CTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHHh-cCCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 7777755443 5688999 9999886543 44455664
No 126
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.86 E-value=8.2e-25 Score=235.29 Aligned_cols=169 Identities=11% Similarity=0.031 Sum_probs=118.9
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHhhhceEEEcCCCccccc-c-H
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKILGIIPQSPVLFSG-T-V 835 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i~~v~Q~~~lf~~-T-v 835 (1128)
..|+||||+|++|++++|+||||||||||+++|.|++ | |+|.+ |+++...++ ...++.++|+||++.+|.. + .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 887755432 2356789999999877743 2 1
Q ss_pred hhccc---cCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH-----HHHhccCCCEEEE
Q 001189 836 RFNLD---PFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL-----SRALLRRSKILVL 904 (1128)
Q Consensus 836 ~~nl~---~~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l-----Arall~~p~iLlL 904 (1128)
.+++. +... ..+.++.++++... ...++ .+||||||||++| ||+++.+|++++|
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 22221 1111 12344555544321 11111 4699999999999 8999999999999
Q ss_pred eccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeC
Q 001189 905 DEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 953 (1128)
Q Consensus 905 DEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~ 953 (1128)
||||+++|.+++..|++.|.+..++.| ++| +..||+|+|+++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999987666666 677 456999887764
No 127
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.86 E-value=2.2e-24 Score=251.05 Aligned_cols=167 Identities=17% Similarity=0.168 Sum_probs=131.1
Q ss_pred CceeeeeEEEcCCc--------------------EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhh
Q 001189 759 PVLHGLSFTIPPSD--------------------KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge--------------------~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 818 (1128)
.+|++|||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999997653 1
Q ss_pred hceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh--HHHHHHHHHHhc
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG--QRQLLSLSRALL 896 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG--qrqrl~lArall 896 (1128)
.++++|++.....|+.||+.+... ...+.+.++..++.+ ++..+ . ||+| ||||++|||||.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch--HHHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHHHH
Confidence 278999975445699998865321 223555566555432 11111 2 8999 999999999999
Q ss_pred c----------CCCEEEEeccccCCCHHHHHHHHHHHHHHc----------CCcEEEEeecCchh--hhh-cCEEE
Q 001189 897 R----------RSKILVLDEATAAVDVRTDALIQKTIREEF----------KSCTMLIIAHRLNT--IID-CDRIL 949 (1128)
Q Consensus 897 ~----------~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~----------~~~Tvi~vtH~l~~--~~~-~D~i~ 949 (1128)
+ +|++++|||||++||+.+++.+++.|++.. ...++++.||.++. ++. ||+|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9 999999999999999999999998888752 13678899999886 665 77663
No 128
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=9e-22 Score=224.29 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=68.8
Q ss_pred CCCCChHHHHHHHHHHHHc----cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEE--EE
Q 001189 243 GVNISGGQKQRVSMARAVY----SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI--IL 316 (1128)
Q Consensus 243 g~~LSGGQkqRiaLARal~----~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i--~~ 316 (1128)
...||||||||++|||||+ .+|++|||||||++||+...+.+++.+.. ..++.|+|+|||+.+.+..||++ ++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~-~~~~~~vi~~tH~~~~~~~~d~~~~v~ 295 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKE-NSKHTQFIVITHNKIVMEAADLLHGVT 295 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHH-HTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hcCCCeEEEEECCHHHHhhCceEEEEE
Confidence 4689999999999999996 68999999999999999999999885544 34578999999998888889987 78
Q ss_pred EeCCeE
Q 001189 317 VHEGMV 322 (1128)
Q Consensus 317 l~~G~i 322 (1128)
|.+|..
T Consensus 296 ~~~g~s 301 (322)
T 1e69_A 296 MVNGVS 301 (322)
T ss_dssp ESSSCE
T ss_pred EeCCEE
Confidence 888854
No 129
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.86 E-value=5.2e-24 Score=242.79 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=113.1
Q ss_pred EEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEc
Q 001189 746 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 825 (1128)
Q Consensus 746 ~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 825 (1128)
|++++| | ++++++++|.|++|+.++|+||||||||||+++|.|+++|++|.|.++|.+. +.....|+.+++++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe
Confidence 445555 4 1489999999999999999999999999999999999999999999998652 22222334444432
Q ss_pred CCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 001189 826 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 905 (1128)
Q Consensus 826 Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLD 905 (1128)
| |||+||++|||||..+|++||||
T Consensus 224 -------------------------------------------g-------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 -------------------------------------------G-------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp -------------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred -------------------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 0 89999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHcCCc-EEEEeecCchhhhhcCEEEEEeCCE
Q 001189 906 EATAAVDVRTDALIQKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGR 955 (1128)
Q Consensus 906 EpTs~lD~~t~~~i~~~l~~~~~~~-Tvi~vtH~l~~~~~~D~i~vl~~G~ 955 (1128)
|||+. .+++.|+....++ |+|+++|+++....|||+++|++|+
T Consensus 248 E~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 248 ELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred CCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 99982 3456666655554 7999999999777799999998875
No 130
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.84 E-value=2.3e-23 Score=245.56 Aligned_cols=195 Identities=11% Similarity=0.080 Sum_probs=153.3
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE---ecCCCC-----
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF---DIAKFG----- 813 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~---~i~~~~----- 813 (1128)
+.++++++++.|..+ ..+|+++ |+|.+||+++|+||||||||||+++|.|+++|++|.|.++|. ++..+.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 458899999999633 3699999 999999999999999999999999999999999999999998 554321
Q ss_pred hHHhhhceEEEcCC-Cccc-cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001189 814 LMDLRKILGIIPQS-PVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 891 (1128)
Q Consensus 814 ~~~~r~~i~~v~Q~-~~lf-~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~l 891 (1128)
...+++.++|++|+ ..++ ..|+.+|+... .+.. ... .......+ +...+||+|| ||++|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~---~~~---------~~~v~~~l-d~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDF---RDR---------GQHVLLIM-DSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHH---HTT---------TCEEEEEE-ECHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHH---HhC---------CCCHHHHH-HhHHHHHHHH-HHHHH
Confidence 34578889999995 3333 44888876531 1111 000 00000011 2234699999 99999
Q ss_pred HHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-----Cc-----EEEEeecCchhhhhcCEEEEEeCCEEEEecC
Q 001189 892 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-----SC-----TMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 892 Arall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-----~~-----Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~ 961 (1128)
| +++|++ |+++|+.+...+.+.+.+..+ |+ ||+++|||++ ...||++++|.+|+|+..|+
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence 9 889988 999999999999999988654 43 9999999999 45599999999999999999
Q ss_pred hhHHhh
Q 001189 962 PEELLS 967 (1128)
Q Consensus 962 ~~~l~~ 967 (1128)
+.++..
T Consensus 339 ~~~~~~ 344 (438)
T 2dpy_A 339 LAEAGH 344 (438)
T ss_dssp HHHTTC
T ss_pred HHHccC
Confidence 998865
No 131
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.83 E-value=5.4e-22 Score=206.13 Aligned_cols=140 Identities=14% Similarity=0.166 Sum_probs=98.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCCc-e------eecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHh
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSDAS-A------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVT 222 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~-~------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~ 222 (1128)
+++|+||||||||||+++|+|++...-.+. . ..+..++|++|++ ++.+|++ +. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~-~------------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SS-K------------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EE-T------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hh-h------------
Confidence 689999999999999999999875221111 1 1235689999986 2233331 10 0
Q ss_pred CcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH-----HccCCCEEEEeC--cCCCcCHHHHHHHHHHHHccccCC
Q 001189 223 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA-----VYSNSDVFIFDD--PLSALDAHVGRQVFDRCIRGELSG 295 (1128)
Q Consensus 223 ~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa-----l~~~~~illLDE--pts~LD~~~~~~i~~~~~~~~~~~ 295 (1128)
. .+ ....++..+.+||||||||++|||| ++.+|++++||| ||++||+...+.+.+.+ .. .+
T Consensus 63 ~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l-~~--~~ 130 (178)
T 1ye8_A 63 F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM-HD--PN 130 (178)
T ss_dssp T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH-TC--TT
T ss_pred c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH-hc--CC
Confidence 0 00 1134666778999999999999996 999999999999 99999999999888754 32 46
Q ss_pred cEEEEEcc---Cccchhc-CCEEEEEeCCeEee
Q 001189 296 KTRVLVTN---QLHFLSQ-VDRIILVHEGMVKE 324 (1128)
Q Consensus 296 ~tvilvtH---~~~~l~~-~d~i~~l~~G~i~~ 324 (1128)
.|+|++|| +..+++. +|+ .+|++.+
T Consensus 131 ~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 131 VNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 78999996 5566654 565 4455554
No 132
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.82 E-value=9.1e-23 Score=217.54 Aligned_cols=167 Identities=12% Similarity=0.058 Sum_probs=112.2
Q ss_pred CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccc-cHh
Q 001189 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVR 836 (1128)
Q Consensus 758 ~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~ 836 (1128)
.++++| .+|++||++||+||||||||||+++|.|+++ .|.+++.....-+....++.++|+||++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 7999999999999999999999999999985 345554222211112346779999999988754 777
Q ss_pred hccccC----C-----CCCHHHHHHH----------HHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 837 FNLDPF----S-----EHSDADLWEA----------LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 837 ~nl~~~----~-----~~~~~~i~~~----------l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
+|+.++ . .....++.+. ++..++.+...+.| ..|| +|+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 776421 1 1122333332 23334444333333 3455 8999
Q ss_pred CCCEEEEeccccCC----CHHHHHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEe
Q 001189 898 RSKILVLDEATAAV----DVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD 952 (1128)
Q Consensus 898 ~p~iLlLDEpTs~l----D~~t~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~ 952 (1128)
+|++++|||||+++ |+..++.+++.+++.. .+.|+|+|||+++++.. ||||++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 7789999999988864 37899999999999987 99999985
No 133
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=6e-22 Score=219.40 Aligned_cols=149 Identities=15% Similarity=0.185 Sum_probs=95.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccc-cHhhccccCCCCCHHHHH
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW 851 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~ 851 (1128)
.+||+||||||||||+++|+|+..|++|+|.++|.++.. ...++.++++||++.++.. ||.+|+.+.......+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 2356789999999988865 999999765432212222
Q ss_pred HHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcE
Q 001189 852 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 931 (1128)
Q Consensus 852 ~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~T 931 (1128)
+.+......++...++ ..||||||||+++|||++. +++|||||.+||+... .+.+.|.+ ..+
T Consensus 81 ~~i~~~~~~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~~---~~~ 142 (270)
T 3sop_A 81 EPIEKYINEQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLSK---VVN 142 (270)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHHT---TSE
T ss_pred HHHHHHHHHHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHHh---cCc
Confidence 2222222223322222 2599999999999999886 9999999999999763 33344443 389
Q ss_pred EEEeecCchhh
Q 001189 932 MLIIAHRLNTI 942 (1128)
Q Consensus 932 vi~vtH~l~~~ 942 (1128)
+|+|.|+.+.+
T Consensus 143 vI~Vi~K~D~l 153 (270)
T 3sop_A 143 IIPVIAKADTM 153 (270)
T ss_dssp EEEEETTGGGS
T ss_pred EEEEEeccccC
Confidence 99999987665
No 134
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.81 E-value=3.9e-22 Score=224.27 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=123.8
Q ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHh--hhceEEEcCCCc-cccc
Q 001189 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDL--RKILGIIPQSPV-LFSG 833 (1128)
Q Consensus 761 l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~-lf~~ 833 (1128)
++++||++++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+..... ..+ |..++|++|++. ++..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 356788999999999999999999999999999999999999999999876431 223 457999999997 6654
Q ss_pred -cHhhccccCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEecccc
Q 001189 834 -TVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATA 909 (1128)
Q Consensus 834 -Tv~~nl~~~~-~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~--iLlLDEpTs 909 (1128)
|+++|+.... ...+. ..++.+++.+ -.+..+ ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~---~lldt~gl~~-------~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDV---VLCDTSGRLH-------TNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSE---EEECCCCCSS-------CCHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcc---hHHhcCCCCc-------chhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 8888875310 00000 0011111110 011222 2488 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEeec---------Cchhhhh-cCEEEEEeCCEE
Q 001189 910 AVDVRTDALIQKTIREEFKSCTMLIIAH---------RLNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 910 ~lD~~t~~~i~~~l~~~~~~~Tvi~vtH---------~l~~~~~-~D~i~vl~~G~i 956 (1128)
++|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99997652 22222 14789999999 2333333 689999999974
No 135
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.81 E-value=1.1e-19 Score=208.48 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=75.7
Q ss_pred CCChhHHHHHHHHHHhc---------cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEE
Q 001189 880 NFSVGQRQLLSLSRALL---------RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILL 950 (1128)
Q Consensus 880 ~LSgGqrqrl~lArall---------~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~v 950 (1128)
.||||||||++|||+|+ .+|+||||||||++||+...+.+.+.|.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998853 79999999 454 8999999
Q ss_pred EeCCEEEEecChhHH
Q 001189 951 LDSGRVLEYDTPEEL 965 (1128)
Q Consensus 951 l~~G~i~~~g~~~~l 965 (1128)
|++|+|++.|+|+++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999987
No 136
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.79 E-value=6.3e-22 Score=230.37 Aligned_cols=165 Identities=19% Similarity=0.128 Sum_probs=125.1
Q ss_pred CCceeeeeEEeeCCC--------------------EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecC---cEEEEec
Q 001189 135 RPTLLNINLDIPVGS--------------------LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG---TVAYVPQ 191 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~--------------------~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~---~i~~v~Q 191 (1128)
+.+|++|||++++|+ +++|+||||||||||+|+|+|+++|++|.+..-.. +.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 358999999999999 99999999999999999999999998876533211 1289999
Q ss_pred CCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChH--HHHHHHHHHHHcc-------
Q 001189 192 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG--QKQRVSMARAVYS------- 262 (1128)
Q Consensus 192 ~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGG--QkqRiaLARal~~------- 262 (1128)
++...+.|+.||+.++.. ..+..+.++..++.+. +..+ .|||| ||||++|||||..
T Consensus 116 ~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~--------~~~~-----~lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY--------DFFI-----IISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp CSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC--------SEEE-----EEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc--------CCeE-----EeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 976557899999877642 2334555666654321 1111 29999 9999999999999
Q ss_pred ---CCCEEEEeCcCCCcCHHHHHHHHHHHHccc-----cC----CcEEEEEccCccc--hhc-CCEE
Q 001189 263 ---NSDVFIFDDPLSALDAHVGRQVFDRCIRGE-----LS----GKTRVLVTNQLHF--LSQ-VDRI 314 (1128)
Q Consensus 263 ---~~~illLDEpts~LD~~~~~~i~~~~~~~~-----~~----~~tvilvtH~~~~--l~~-~d~i 314 (1128)
+||+++|||||++||+..++.+++.+.... .. ..++++.||.++. ++. +|+|
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999999999999999888877554331 11 3677888998765 433 4544
No 137
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.78 E-value=3.8e-21 Score=220.10 Aligned_cols=173 Identities=16% Similarity=0.161 Sum_probs=124.1
Q ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHHh--hhceEEEcCCCc-ccc-c
Q 001189 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDL--RKILGIIPQSPV-LFS-G 833 (1128)
Q Consensus 762 ~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 833 (1128)
..+||++++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|+|++|++. ++. .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3478889999999999999999999999999999999999999999987643 1222 457999999987 664 4
Q ss_pred cHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEeccccC
Q 001189 834 TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAA 910 (1128)
Q Consensus 834 Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~--iLlLDEpTs~ 910 (1128)
|+++|+..... ..+. ..++.+++.+ -.+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~---~lldt~Gl~~-------~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV---VLCDTSGRLH-------TNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE---EEEECCCCSS-------CCHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH---HHHHhcCCCh-------hhhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 88888753100 0000 0011111110 011222 2488 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHcCCcEEEEeecC---------chhhhh-cCEEEEEeCCEE
Q 001189 911 VDVRTDALIQKTIREEFKSCTMLIIAHR---------LNTIID-CDRILLLDSGRV 956 (1128)
Q Consensus 911 lD~~t~~~i~~~l~~~~~~~Tvi~vtH~---------l~~~~~-~D~i~vl~~G~i 956 (1128)
+|+.+.. +.+.+ ..+.|+|++||. ++.+.. .+.|..+..|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9997653 22222 147899999992 333333 689999999874
No 138
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.78 E-value=7.2e-22 Score=223.12 Aligned_cols=177 Identities=16% Similarity=0.226 Sum_probs=124.9
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEE-----------------------EcCCcEEEEECCCCCCHHHHHHHHhcCCCC
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFT-----------------------IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 797 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~-----------------------i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p 797 (1128)
.+.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|.|+++|
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34699999999994 577777765 899999999999999999999999999999
Q ss_pred CCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC--CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhh
Q 001189 798 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLD-AQV 874 (1128)
Q Consensus 798 ~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~Gld-t~v 874 (1128)
..|. +++++|+|++.++..|+++|+.... ...+.. ....+.++++.+..|.. ..+
T Consensus 117 ~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~-----d~~~~~~~L~~l~~~~~~~~~ 174 (312)
T 3aez_A 117 WDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESY-----NRRALMRFVTSVKSGSDYACA 174 (312)
T ss_dssp STTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGB-----CHHHHHHHHHHHHTTCSCEEE
T ss_pred cCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHH-----HHHHHHHHHHHhCCCcccCCc
Confidence 8663 4699999999998889999986532 111100 01112333444433332 222
Q ss_pred hcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhh--cCEEEEEe
Q 001189 875 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID--CDRILLLD 952 (1128)
Q Consensus 875 ~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~--~D~i~vl~ 952 (1128)
..|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.+ + .+|+|+|+.+.... ++|.+.+.
T Consensus 175 ----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 175 ----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp ----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred ----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999999998621 1122221 2 34666666655432 45544444
Q ss_pred CC
Q 001189 953 SG 954 (1128)
Q Consensus 953 ~G 954 (1128)
+|
T Consensus 244 d~ 245 (312)
T 3aez_A 244 TT 245 (312)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 139
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.78 E-value=4.4e-22 Score=214.01 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=103.8
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee------------ecCcEEEEecCCCCCcc-----
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNA----- 198 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~----- 198 (1128)
.-|+||||++++|++++|+||||||||||+++|+|++ | |.... .+..++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 4799999999999999999999999999999999998 5 44321 13468999998766532
Q ss_pred ------cHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHH-----HHHHccCCCEE
Q 001189 199 ------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM-----ARAVYSNSDVF 267 (1128)
Q Consensus 199 ------Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaL-----ARal~~~~~il 267 (1128)
++.+| .+|. ..+.+.++++...+ ..++ .+||||||||++| ||+++.+|+++
T Consensus 88 ~~l~~~~~~~~-~~g~--~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGT--LKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp CEEEEEEETTE-EEEE--EHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred chhhhhhcccc-cCCC--cHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 33333 2221 13344455443221 1111 5799999999999 89999999999
Q ss_pred EEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeC
Q 001189 268 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 319 (1128)
Q Consensus 268 lLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 319 (1128)
+|||||+++|.++++.+.+.+.. ..+++| ++| +..+|.|+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~-~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQ-LNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHH-HHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH-HHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999988888776543 223345 677 577899988765
No 140
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.77 E-value=2e-20 Score=214.15 Aligned_cols=196 Identities=13% Similarity=0.127 Sum_probs=145.3
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC-------CCh
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK-------FGL 814 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~-------~~~ 814 (1128)
..++.+++++.|..+ ..+|+++ |+|.+||++||+||||||||||+++|+|+.+|+.|.|.+.|.+..+ ...
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 358889999999633 3699999 9999999999999999999999999999999999999998865211 112
Q ss_pred HHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhHHHHHHHHH
Q 001189 815 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~-v~e~g~~LSgGqrqrl~lAr 893 (1128)
..+++.+.+++|.+. ....++..++....+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~---------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR---------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHTTEEEEEECTTS---------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhceEEEEECCCC---------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 223444555554321 012334444444444444322 222211 012234699999 899999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc--C-Cc-----EEEEeecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--K-SC-----TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~--~-~~-----Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l 965 (1128)
+.+|++ |+|+|+.....+.+.+++.. + |. ||+++||+++ -.-||++++|.+|+|+..|++.++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 688887 99999999999999998865 2 56 8999999998 333999999999999999999987
Q ss_pred hh
Q 001189 966 LS 967 (1128)
Q Consensus 966 ~~ 967 (1128)
..
T Consensus 254 ~~ 255 (347)
T 2obl_A 254 NH 255 (347)
T ss_dssp TC
T ss_pred CC
Confidence 64
No 141
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.76 E-value=3.7e-21 Score=217.31 Aligned_cols=137 Identities=13% Similarity=0.125 Sum_probs=109.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEE-----------------------eeCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLD-----------------------IPVGSLVAIVGGTGEGKTSLISAMLGELPPV 175 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~-----------------------i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~ 175 (1128)
.|+++||++.|. |+++++++. +++|++++|+|+||||||||+++|+|+++|.
T Consensus 43 ~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 43 QIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred eEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 589999999994 577777765 8999999999999999999999999999887
Q ss_pred CCCceeecCcEEEEecCCCCCcccHHHHHhcCC----C--CCHHHHHHHHHHhCcHHHHhcCCCCCc-ccccCCCCCCCh
Q 001189 176 SDASAVIRGTVAYVPQVSWIFNATVRDNILFGS----A--FEPARYEKAIDVTSLQHDLDLLPGGDV-TEIGERGVNISG 248 (1128)
Q Consensus 176 ~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~----~--~~~~~~~~~~~~~~l~~~~~~l~~g~~-t~vg~~g~~LSG 248 (1128)
.|. ..++|++|++.++..|++||+.+.. + .+.+.+.+.++.. ..+.. .. ...|||
T Consensus 118 ~G~-----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l---------~~~~~~~~----~~~lS~ 179 (312)
T 3aez_A 118 DHH-----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSV---------KSGSDYAC----APVYSH 179 (312)
T ss_dssp TTC-----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHH---------HTTCSCEE----EEEEET
T ss_pred CCC-----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHh---------CCCcccCC----cccCCh
Confidence 553 4699999999998779999997532 1 2223333333322 12221 22 257999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCcCCCcCH
Q 001189 249 GQKQRVSMARAVYSNSDVFIFDDPLSALDA 278 (1128)
Q Consensus 249 GQkqRiaLARal~~~~~illLDEpts~LD~ 278 (1128)
||+||+++|||++.+|+|+|||||++.+|+
T Consensus 180 G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 180 LHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 999999999999999999999999999986
No 142
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.76 E-value=9.1e-19 Score=212.18 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=71.0
Q ss_pred CCC-ChhHHHHHHHHHHhccCC--CEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCC
Q 001189 879 ENF-SVGQRQLLSLSRALLRRS--KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 954 (1128)
Q Consensus 879 ~~L-SgGqrqrl~lArall~~p--~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G 954 (1128)
..| |||||||++||||++.+| ++|||||||+|||+.+...|.+.|+++.+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999999877789999999999988889999999665
No 143
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.76 E-value=2e-20 Score=227.16 Aligned_cols=167 Identities=14% Similarity=0.155 Sum_probs=121.7
Q ss_pred CCceeeeeE-EEcCCcEEEEECCCCCCHHHHHHH--HhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCcccccc
Q 001189 758 PPVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNT--LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGT 834 (1128)
Q Consensus 758 ~~~l~~vsl-~i~~Ge~v~ivG~~GsGKSTll~~--l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~T 834 (1128)
.++|++++| .|++||+++|+||||||||||+++ +.|+++|++|.|+++|.+. .......++.+|+++|++... ++
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-~~ 102 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-GK 102 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT-TS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc-Cc
Confidence 479999999 999999999999999999999999 6899999999999999873 222334567799999997531 11
Q ss_pred HhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecccc-----
Q 001189 835 VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA----- 909 (1128)
Q Consensus 835 v~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs----- 909 (1128)
+.. +..... .+..++++..++.+...+.+ ..|||| +|++|+|||||+
T Consensus 103 l~~-~~~~~~---~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 103 LFI-LDASPD---PEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVSIDSVTSVFQQY 154 (525)
T ss_dssp EEE-EECCCC---SSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEEEECSTTTSTTT
T ss_pred EEE-EecCcc---cchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEEECCHHHHHHhc
Confidence 110 111100 00111223334444333322 246666 478999999998
Q ss_pred CCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhh---------hh-cCEEEEEeCC
Q 001189 910 AVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI---------ID-CDRILLLDSG 954 (1128)
Q Consensus 910 ~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~---------~~-~D~i~vl~~G 954 (1128)
++|+...+.+.+.++.+. .++|||+|+|+++.+ .. ||+|++|++|
T Consensus 155 ~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 468999999999998764 489999999999985 45 9999999983
No 144
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.75 E-value=8.3e-21 Score=198.88 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=119.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHH
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADL 850 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i 850 (1128)
|++++|+||||||||||+++|+|+++ ++| |.++|.++.++. .+++++++++|+. .++ +.|+..+....+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 999999886543 4688999999986 343 344432110000
Q ss_pred HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH-HHHH---HhccCCCEEEEec--cccCCCHHHHHHHHHHHH
Q 001189 851 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL-SLSR---ALLRRSKILVLDE--ATAAVDVRTDALIQKTIR 924 (1128)
Q Consensus 851 ~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl-~lAr---all~~p~iLlLDE--pTs~lD~~t~~~i~~~l~ 924 (1128)
+...+..+++.+..+|+|||+++ ++++ |++++|+|||||| ||..+|....+.+.+.++
T Consensus 70 ----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 70 ----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp ----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 01122367777788999999998 5555 6899999999999 899999999888888887
Q ss_pred HHcCCcEEE----EeecCchhhhhcCEEEEEeCCEEEEec
Q 001189 925 EEFKSCTML----IIAHRLNTIIDCDRILLLDSGRVLEYD 960 (1128)
Q Consensus 925 ~~~~~~Tvi----~vtH~l~~~~~~D~i~vl~~G~i~~~g 960 (1128)
+ ..|+| .|+||.+ ..-+|+|..+++|+|++..
T Consensus 134 ~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 134 T---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp C---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred C---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 4 33444 4459875 3336777777888888753
No 145
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.75 E-value=6.3e-19 Score=226.41 Aligned_cols=172 Identities=14% Similarity=0.168 Sum_probs=122.9
Q ss_pred ccEEEEE-----EEEEeCCCCCCceeeeeEEEcC-------CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Q 001189 742 GSIKFED-----VVLRYRPELPPVLHGLSFTIPP-------SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 809 (1128)
Q Consensus 742 g~i~~~~-----v~~~y~~~~~~~l~~vsl~i~~-------Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i 809 (1128)
+.|+++| |++.|.++ ..+++|++|++++ |++++|+|||||||||+++++ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 4599999 99999433 4799999999988 999999999999999999999 99864
Q ss_pred CCCChHHhhhceE-EEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 810 AKFGLMDLRKILG-IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 810 ~~~~~~~~r~~i~-~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
+.++| ||||++. ..|+.+++.. +.++.+.+. .| -.++|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~--------------rig~~d~~~---~~--------~stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFT--------------RLGASDRIM---SG--------ESTFFVELSE- 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEE--------------ECC--------------------CHHHHHHHH-
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHH--------------HcCCHHHHh---hc--------hhhhHHHHHH-
Confidence 23566 9999974 4467777631 112222211 11 2357777765
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHH-HHHHHHHHHHHc-C-CcEEEEeecCchhhhh-cCEEEEEeCCEEE--EecCh
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVL--EYDTP 962 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t-~~~i~~~l~~~~-~-~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~--~~g~~ 962 (1128)
+++|++++.+|+++||||||+|+|+.. ...+++.|+.+. . ++|+|++||+++.+.. ||++.++ +|++. +.|.+
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 999999999999999999999999977 455778877764 3 7999999999999887 9999887 58887 55665
Q ss_pred hH
Q 001189 963 EE 964 (1128)
Q Consensus 963 ~~ 964 (1128)
++
T Consensus 938 ~~ 939 (1022)
T 2o8b_B 938 ED 939 (1022)
T ss_dssp --
T ss_pred cc
Confidence 44
No 146
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.74 E-value=2.1e-17 Score=189.46 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=68.3
Q ss_pred CCCCChhHHH------HHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEEEE
Q 001189 878 GENFSVGQRQ------LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 950 (1128)
Q Consensus 878 g~~LSgGqrq------rl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i~v 950 (1128)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|++.. .++|||+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 6788899999999999999999999999999999998864 46799999999776666999999
Q ss_pred Ee--CCE
Q 001189 951 LD--SGR 955 (1128)
Q Consensus 951 l~--~G~ 955 (1128)
|+ +|.
T Consensus 326 l~~~~g~ 332 (339)
T 3qkt_A 326 ISLENGS 332 (339)
T ss_dssp EEEETTE
T ss_pred EEecCCc
Confidence 86 454
No 147
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.74 E-value=2.6e-20 Score=219.54 Aligned_cols=183 Identities=11% Similarity=0.050 Sum_probs=139.9
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 181 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~---------------- 181 (1128)
+.++++++++.|.. +..+|+++ |++.+|++++|+||||||||||+++|+|+.+|+.|....
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 35799999 999999999999999999999999999999998753211
Q ss_pred ----ecCcEEEEecC-CC-CCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 001189 182 ----IRGTVAYVPQV-SW-IFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 255 (1128)
Q Consensus 182 ----~~~~i~~v~Q~-~~-l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRia 255 (1128)
++..|+|++|+ .. ....|+.+|+.+. .++... .+ .++. .+=+...+||||| |||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~~~---~~--~~v~--------~~ld~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDFRD---RG--QHVL--------LIMDSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHHHT---TT--CEEE--------EEEECHHHHHHHH-HHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHHHh---CC--CCHH--------HHHHhHHHHHHHH-HHHH
Confidence 23458999995 33 3477999999863 122110 00 0000 1112346899999 9999
Q ss_pred HHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc---C-Cc-----EEEEEccCccchhcCCEEEEEeCCeEeeec
Q 001189 256 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---S-GK-----TRVLVTNQLHFLSQVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 256 LARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~---~-~~-----tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 326 (1128)
|| +.+|++ |++||+.+...+.+.+.+... + |+ |++++|||++ ...||++++|.+|+|+.+|
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 99 888888 999999999999875544333 2 64 9999999999 6678999999999999998
Q ss_pred ChhHHh
Q 001189 327 TFEDLS 332 (1128)
Q Consensus 327 ~~~~l~ 332 (1128)
++.++.
T Consensus 338 ~~~~~~ 343 (438)
T 2dpy_A 338 RLAEAG 343 (438)
T ss_dssp HHHHTT
T ss_pred CHHHcc
Confidence 877654
No 148
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.74 E-value=1.2e-17 Score=191.49 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=67.0
Q ss_pred CCCCChHHHH------HHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEE
Q 001189 243 GVNISGGQKQ------RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIIL 316 (1128)
Q Consensus 243 g~~LSGGQkq------RiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~ 316 (1128)
...||||||| |+++||||+.+|++|||||||++||+...+.+++.+......++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 4679999999 6788899999999999999999999999999988655444457899999999888888999999
Q ss_pred Ee
Q 001189 317 VH 318 (1128)
Q Consensus 317 l~ 318 (1128)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 149
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.74 E-value=3e-19 Score=196.72 Aligned_cols=132 Identities=19% Similarity=0.188 Sum_probs=101.1
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEecCCCChHHhhhceEEEcCCCccccccHhh
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 837 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~ 837 (1128)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 5899999 9999999999999999999999999999998 999999987653221 1112222221
Q ss_pred ccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHH
Q 001189 838 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917 (1128)
Q Consensus 838 nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~ 917 (1128)
..|++. ..| |++|||||..+|++|+||||| |+++..
T Consensus 79 -----------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 79 -----------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp -----------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred -----------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 112221 123 899999999999999999999 988865
Q ss_pred HHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeC
Q 001189 918 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 953 (1128)
Q Consensus 918 ~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~ 953 (1128)
.+. +....+.||++++|+.+....|||+++|..
T Consensus 115 ~~l---~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 115 TAL---RAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHH---HHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHH---HHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 443 333368999999999886666999988754
No 150
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.73 E-value=7.4e-18 Score=193.24 Aligned_cols=81 Identities=19% Similarity=0.132 Sum_probs=72.3
Q ss_pred CCChHHHHHHHHHHHHc---------cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEE
Q 001189 245 NISGGQKQRVSMARAVY---------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 315 (1128)
Q Consensus 245 ~LSGGQkqRiaLARal~---------~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 315 (1128)
.||||||||++|||+|+ .+|+|||||||||+||+...+.+++.+... +.|+|++||. +. .+|+++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~---~qt~i~~th~-~~--~~~~i~ 338 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV---PQAIVTGTEL-AP--GAALTL 338 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS---SEEEEEESSC-CT--TCSEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc---CcEEEEEEec-cc--cCCEEE
Confidence 59999999999999999 899999999999999999999999865432 2799999994 44 889999
Q ss_pred EEeCCeEeeecChhHH
Q 001189 316 LVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 316 ~l~~G~i~~~g~~~~l 331 (1128)
+|++|+++..|+++++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 9999999999988765
No 151
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.73 E-value=2.1e-18 Score=194.02 Aligned_cols=181 Identities=10% Similarity=0.096 Sum_probs=118.8
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEecCCCChHHhhhceEEEcCCCccccccHhh
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 837 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~ 837 (1128)
++|+++++.+++|++++|+||||||||||++.|+|.+.|++| .|.+.+.+ .+...+++++..+.|...+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999999888 77654433 3455666665555444322 1112
Q ss_pred ccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH-HHHHHHHHHhccCCCEEEEecccc---C---
Q 001189 838 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ-RQLLSLSRALLRRSKILVLDEATA---A--- 910 (1128)
Q Consensus 838 nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq-rqrl~lArall~~p~iLlLDEpTs---~--- 910 (1128)
++... ..++++..+.. .+++...+.. +.+...++|.+| +||+. |+++..+|++|||||||+ +
T Consensus 97 ~l~~~-~~~~~~~~~~~-----~~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE-IIENGKFDQWF-----DELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH-HHHHTHHHHHH-----HHHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC-CCCHHHHHHHH-----HHHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 22110 00111222111 1122221222 222224589999 66666 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHHc--CCcEEEEeecCc--h--------------------hhhh-cCEEEEEeCCEE
Q 001189 911 VDV-RTDALIQKTIREEF--KSCTMLIIAHRL--N--------------------TIID-CDRILLLDSGRV 956 (1128)
Q Consensus 911 lD~-~t~~~i~~~l~~~~--~~~Tvi~vtH~l--~--------------------~~~~-~D~i~vl~~G~i 956 (1128)
+|. .....+.+.|+++. .++|||++||.. + .+.. ||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 454 55567888887764 379999999995 4 5555 999999998875
No 152
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.72 E-value=1.9e-19 Score=205.11 Aligned_cols=131 Identities=21% Similarity=0.240 Sum_probs=95.9
Q ss_pred ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001189 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 216 (1128)
Q Consensus 137 ~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 216 (1128)
+++++||.+++|+.++|+||||||||||+++|+|+++|++|.+ .+.+. +.+.....++++.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i-~i~~~-------~e~~~~~~~~~i~----------- 220 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII-SIEDT-------EEIVFKHHKNYTQ----------- 220 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE-EEESS-------CCCCCSSCSSEEE-----------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE-EECCe-------eccccccchhEEE-----------
Confidence 7999999999999999999999999999999999999976533 22221 1000000000000
Q ss_pred HHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCC-
Q 001189 217 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG- 295 (1128)
Q Consensus 217 ~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~- 295 (1128)
..+ | |||+||++|||||..+|++++|||||+. +. ++ ++.....|
T Consensus 221 -------------~~~-------g-------gg~~~r~~la~aL~~~p~ilildE~~~~---e~----~~-~l~~~~~g~ 265 (330)
T 2pt7_A 221 -------------LFF-------G-------GNITSADCLKSCLRMRPDRIILGELRSS---EA----YD-FYNVLCSGH 265 (330)
T ss_dssp -------------EEC-------B-------TTBCHHHHHHHHTTSCCSEEEECCCCST---HH----HH-HHHHHHTTC
T ss_pred -------------EEe-------C-------CChhHHHHHHHHhhhCCCEEEEcCCChH---HH----HH-HHHHHhcCC
Confidence 000 1 8999999999999999999999999982 32 22 22222234
Q ss_pred cEEEEEccCccchhcCCEEEEEeCCe
Q 001189 296 KTRVLVTNQLHFLSQVDRIILVHEGM 321 (1128)
Q Consensus 296 ~tvilvtH~~~~l~~~d~i~~l~~G~ 321 (1128)
.|+|++||+.+..+.+||+++|.+|.
T Consensus 266 ~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 266 KGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred CEEEEEEcccHHHHHhhhheehhcCC
Confidence 58999999999777899999998875
No 153
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.72 E-value=4.7e-20 Score=189.77 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=88.0
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCCCC---hHHhh-hceE----EEcCCCccccccHhhccc
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFG---LMDLR-KILG----IIPQSPVLFSGTVRFNLD 840 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~p~---~G~I~i~g~~i~~~~---~~~~r-~~i~----~v~Q~~~lf~~Tv~~nl~ 840 (1128)
++++|+|+||||||||+++|.|+++|+ .|.|.+||.++.+++ .+.+| +.++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999987776 66788 4788 899999887 222
Q ss_pred cCCCCCHHHHHHHHHHhcHHHHHHH-ccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001189 841 PFSEHSDADLWEALERAHLKDAIRR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 902 (1128)
Q Consensus 841 ~~~~~~~~~i~~~l~~~~l~~~i~~-lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iL 902 (1128)
. +.+. .+++.+++.+ +| |+||.++|+ |||||||||+||||++++|++.
T Consensus 77 ----~-~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----V-SEEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----C-CHHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----C-Chhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 0 1121 6799999999 99 999999995 9999999999999999999863
No 154
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.70 E-value=4.4e-20 Score=196.75 Aligned_cols=166 Identities=15% Similarity=0.171 Sum_probs=101.1
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCc--------eeecCcEEEEecCCCCC-cccHHHHHh
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS--------AVIRGTVAYVPQVSWIF-NATVRDNIL 205 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~--------~~~~~~i~~v~Q~~~l~-~~Tv~eni~ 205 (1128)
.++++| .++++|++++|+||||||||||+++|+|+++...+.. ...+..++|++|++.+| ..|+.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 578888 7999999999999999999999999999985221110 00134589999998776 457777764
Q ss_pred c-----C--C--CCCHHHHHHHHHHh-CcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH---HHccCCCEEEEeCc
Q 001189 206 F-----G--S--AFEPARYEKAIDVT-SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR---AVYSNSDVFIFDDP 272 (1128)
Q Consensus 206 ~-----g--~--~~~~~~~~~~~~~~-~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR---al~~~~~illLDEp 272 (1128)
. + . ....+...+.++.. .+. + ...+.|.+.++-..++ +|+.+|++++||||
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~-------------~---~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep 150 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVL-------------I---EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQAR 150 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCCEE-------------E---ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHH
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCeEE-------------E---EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHH
Confidence 2 1 0 01122222222221 000 0 0122333333333333 89999999999999
Q ss_pred CCCc----CHHHHHHHHHHHHccc-cCCcEEEEEccCccchh-cCCEEEEEe
Q 001189 273 LSAL----DAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVH 318 (1128)
Q Consensus 273 ts~L----D~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~ 318 (1128)
|+++ |+...+.+.+.+.... ..|.|+|+|||+++.+. .||+|++|.
T Consensus 151 ~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 151 LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9998 7778888877544432 34789999999999876 489999984
No 155
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.70 E-value=1e-17 Score=215.25 Aligned_cols=166 Identities=11% Similarity=0.121 Sum_probs=119.5
Q ss_pred CcEEEEe-----EEEEeCCCCCCCceeeeeEEeeC-------CCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCc
Q 001189 118 PAISIRN-----GYFSWDSKAERPTLLNINLDIPV-------GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT 185 (1128)
Q Consensus 118 ~~i~~~~-----~~f~~~~~~~~~~L~~isl~i~~-------G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~ 185 (1128)
+.++++| +++.|+. ++++++|++|++++ |++++|+||||||||||++.+ |++.+. .+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------aq 817 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------AQ 817 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------HT
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------hh
Confidence 4699999 9998842 35899999999987 999999999999999999999 987642 24
Q ss_pred EE-EEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 001189 186 VA-YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 264 (1128)
Q Consensus 186 i~-~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~ 264 (1128)
+| ||||++. ..||.|+|... .++.+.+. .+-.++|+|+++ +++|++++.+|
T Consensus 818 iG~~Vpq~~~--~l~v~d~I~~r--------------ig~~d~~~-----------~~~stf~~em~~-~a~al~la~~~ 869 (1022)
T 2o8b_B 818 MGCYVPAEVC--RLTPIDRVFTR--------------LGASDRIM-----------SGESTFFVELSE-TASILMHATAH 869 (1022)
T ss_dssp TTCCEESSEE--EECCCSBEEEE--------------CC--------------------CHHHHHHHH-HHHHHHHCCTT
T ss_pred eeEEeccCcC--CCCHHHHHHHH--------------cCCHHHHh-----------hchhhhHHHHHH-HHHHHHhCCCC
Confidence 55 9999873 55777776421 11111111 112468888775 99999999999
Q ss_pred CEEEEeCcCCCcCHHHHHHHHHHHHcc-ccC-CcEEEEEccCccchhc-CCEEEEEeCCeEe
Q 001189 265 DVFIFDDPLSALDAHVGRQVFDRCIRG-ELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 323 (1128)
Q Consensus 265 ~illLDEpts~LD~~~~~~i~~~~~~~-~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 323 (1128)
+++|||||++|+|+.....+...++.. ..+ |.++|++||+.+.... +|++.++ +|++.
T Consensus 870 sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 870 SLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp CEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred cEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 999999999999998754433334433 234 8999999999998875 7888776 58877
No 156
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.69 E-value=3.5e-19 Score=194.91 Aligned_cols=164 Identities=13% Similarity=0.193 Sum_probs=102.5
Q ss_pred CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhh
Q 001189 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 837 (1128)
Q Consensus 758 ~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~ 837 (1128)
.++|+|+||++++|+++||+||||||||||+++|.|++ |.+.++ ..++.+++++|++.....|+.+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 47999999999999999999999999999999999976 555444 3577899999997433448887
Q ss_pred ccccCC---C------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccc
Q 001189 838 NLDPFS---E------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 908 (1128)
Q Consensus 838 nl~~~~---~------~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpT 908 (1128)
|+.... . ...+.+.+.++ .+..+.+..+ ..||+||+||+++ ++++.+|+++|||||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~---------~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~ 143 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLK---------NIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGIL 143 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHH---------HHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECTT
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHH---------HHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCcc
Confidence 753211 1 11122222222 2222333222 4699999999988 6888999999999998
Q ss_pred cCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhh-h-cCEEEEEeCCEEEEecChhHHh
Q 001189 909 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII-D-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 909 s~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~-~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
...|.. +.+. .+.||+++||+...+. . ++++ ++|+ ++++++
T Consensus 144 ~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 144 VFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred ccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 877753 2222 4789999999744443 3 4434 5564 556655
No 157
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.69 E-value=3e-17 Score=208.24 Aligned_cols=167 Identities=14% Similarity=0.068 Sum_probs=119.0
Q ss_pred ccEEEEEEEEEeCC---CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHH--------hcCCCCCCceEEECCEecC
Q 001189 742 GSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--------FRIVELERGRILIDGFDIA 810 (1128)
Q Consensus 742 g~i~~~~v~~~y~~---~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l--------~g~~~p~~G~I~i~g~~i~ 810 (1128)
+.|.+++...-+-. +.+.+++|++|++++|++++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 35777776443311 124689999999999999999999999999999999 55554443221
Q ss_pred CCChHHhhhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001189 811 KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 890 (1128)
Q Consensus 811 ~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~ 890 (1128)
++++ +.+. .+.++.+.+ ...+|+|++++..
T Consensus 702 ----------~~~~------------d~i~--------------~~ig~~d~l--------------~~~lStf~~e~~~ 731 (934)
T 3thx_A 702 ----------VSIV------------DCIL--------------ARVGAGDSQ--------------LKGVSTFMAEMLE 731 (934)
T ss_dssp ----------EECC------------SEEE--------------EECC-----------------------CHHHHHHHH
T ss_pred ----------chHH------------HHHH--------------HhcCchhhH--------------HHhHhhhHHHHHH
Confidence 0000 0110 001111111 1247888888888
Q ss_pred HHHHh--ccCCCEEEEeccccCCCHHHHHHH-HHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 001189 891 LSRAL--LRRSKILVLDEATAAVDVRTDALI-QKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 965 (1128)
Q Consensus 891 lAral--l~~p~iLlLDEpTs~lD~~t~~~i-~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l 965 (1128)
+|+++ +.+|+++||||||+|+|+.....+ +..++.+. .++|+|++||+.+...-||++..+.+|++...++++++
T Consensus 732 ~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 88888 899999999999999999887776 56665543 38999999999877777999999999999998888776
Q ss_pred h
Q 001189 966 L 966 (1128)
Q Consensus 966 ~ 966 (1128)
.
T Consensus 812 ~ 812 (934)
T 3thx_A 812 T 812 (934)
T ss_dssp E
T ss_pred E
Confidence 4
No 158
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.69 E-value=4.6e-19 Score=196.23 Aligned_cols=136 Identities=17% Similarity=0.195 Sum_probs=91.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCCce---------eecCcEEEEecCCCCC-cccHHHHHhcCCCCCH----HHH
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVSDASA---------VIRGTVAYVPQVSWIF-NATVRDNILFGSAFEP----ARY 215 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~---------~~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~----~~~ 215 (1128)
.++|+||||||||||+++|+|...|++|.+. ..+..++|++|++.++ ..||.||+.||..... +.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 4899999999999999999999999877432 1235699999999886 5699999999864321 223
Q ss_pred HHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCC
Q 001189 216 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 295 (1128)
Q Consensus 216 ~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~ 295 (1128)
.+.++ ....+.++ ..||||||||+++|||++. +|+||||+++||+... .++..+.. .
T Consensus 84 ~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~~---~- 140 (270)
T 3sop_A 84 EKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLSK---V- 140 (270)
T ss_dssp HHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHHT---T-
T ss_pred HHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHHh---c-
Confidence 33322 22222222 3699999999999999886 9999999999999864 33343322 2
Q ss_pred cEEEEEccCccch
Q 001189 296 KTRVLVTNQLHFL 308 (1128)
Q Consensus 296 ~tvilvtH~~~~l 308 (1128)
.++|+|.|+.+.+
T Consensus 141 ~~vI~Vi~K~D~l 153 (270)
T 3sop_A 141 VNIIPVIAKADTM 153 (270)
T ss_dssp SEEEEEETTGGGS
T ss_pred CcEEEEEeccccC
Confidence 7899998886654
No 159
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.69 E-value=4.4e-19 Score=199.35 Aligned_cols=163 Identities=13% Similarity=0.105 Sum_probs=111.4
Q ss_pred eeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee------------------cCcEEEEecCCC-CC-c
Q 001189 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSW-IF-N 197 (1128)
Q Consensus 138 L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~-l~-~ 197 (1128)
++.+||++++|++++|+||||||||||++.|+|.++|++|.+... +..|+|++|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 356889999999999999999999999999999998876653221 125999999987 65 6
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCcCCC
Q 001189 198 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSA 275 (1128)
Q Consensus 198 ~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~--illLDEpts~ 275 (1128)
.|++||+.++.... .. ...++.. |..........+|| |||++||||+..+|+ +|+|| ||++
T Consensus 170 ~~v~e~l~~~~~~~----------~d-~~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 170 TVLSKAVKRGKEEG----------YD-VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHHTT----------CS-EEEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHcC----------Cc-chHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 79999997541000 00 0001111 11101111123588 999999999999999 99999 9999
Q ss_pred cCHHHHHHHHHHHHccccCCcEEEEEccCcc---------chhc-CCEEEEEeCCeE
Q 001189 276 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLH---------FLSQ-VDRIILVHEGMV 322 (1128)
Q Consensus 276 LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~---------~l~~-~d~i~~l~~G~i 322 (1128)
||+.....- +. ...|.|+|++||.-. .... .+.|.++..|+.
T Consensus 233 lD~~~~~~~---~~--~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 233 LNMLPQARE---FN--EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGHHHHHH---HH--HHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cCHHHHHHH---HH--HhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 999854321 11 124789999999322 2222 478888888863
No 160
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.68 E-value=9.4e-18 Score=183.30 Aligned_cols=179 Identities=13% Similarity=0.083 Sum_probs=109.2
Q ss_pred EEEEEEEEEeCCCCCCceeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHh--cCCCCCCceEEECCEecCCCChHHhhhc
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMDLRKI 820 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl-~i~~Ge~v~ivG~~GsGKSTll~~l~--g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 820 (1128)
+++++++..|+ .|+++-- .|++|++++|+||||||||||+++|+ ++..+.+|.+.+++.+... .....++.
T Consensus 7 ~~~~~i~tg~~-----~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIP-----GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCT-----TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCH-----hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 34445544442 3444411 68999999999999999999999999 7756778888887644221 12223456
Q ss_pred eEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 821 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 821 i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
+++.+|+...+.. ++.++..........+.... . ...+-++.+....+..-..+|
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~----~~~~~~~~~~~~~~~l~~~~p 136 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVL--------------------E----DRFNVDNFLRYIYRVVKAINA 136 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTTC
T ss_pred cCCChHHHhhcCCEEEEEccccccccccccceec--------------------c----CcccHHHHHHHHHHHHHhhCC
Confidence 8888887654422 33333211100000000000 0 112334444444444445799
Q ss_pred CEEEEeccccCCC-----HHHHHHHHHHHHHHc-CCcEEEEeecCchhh---------hh-c-CEEEEEe
Q 001189 900 KILVLDEATAAVD-----VRTDALIQKTIREEF-KSCTMLIIAHRLNTI---------ID-C-DRILLLD 952 (1128)
Q Consensus 900 ~iLlLDEpTs~lD-----~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~---------~~-~-D~i~vl~ 952 (1128)
++|+|||||+++| +...+.+.+.++.+. .++|||++||+++.+ .. | |+|++|+
T Consensus 137 ~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 137 KRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp SEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 9999999999997 666666888887654 489999999999987 44 7 9999996
No 161
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.67 E-value=4.9e-18 Score=194.31 Aligned_cols=187 Identities=14% Similarity=0.137 Sum_probs=129.6
Q ss_pred CcEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCc
Q 001189 118 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 197 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~ 197 (1128)
+.++.+++++.|.. +..+|+++ |+|.+|++++|+|+||||||||+++|+|..+|+.|. +.++.+++
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~-------i~~~G~~~---- 109 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIV-------LALIGERG---- 109 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE-------EEEESCCH----
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEE-------EEEecccH----
Confidence 35788999999963 35699999 999999999999999999999999999999987642 22333321
Q ss_pred ccHHHH------------HhcCCCC---CHHHHHHHHHHhCcHHHHhcCCCCCc-ccccCCCCCCChHHHHHHHHHHHHc
Q 001189 198 ATVRDN------------ILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGDV-TEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 198 ~Tv~en------------i~~g~~~---~~~~~~~~~~~~~l~~~~~~l~~g~~-t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
..+++. +.+.... ..+++......+.+.+.+.. .+.+ -.+-+...+||+|| |||++| +
T Consensus 110 ~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l 183 (347)
T 2obl_A 110 REVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---S 183 (347)
T ss_dssp HHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---T
T ss_pred HHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---c
Confidence 011111 1111111 12344444444444443322 1111 11113456899999 899999 5
Q ss_pred cCCCEEEEeCcCCCcCHHHHHHHHHHHHccc--cCCc-----EEEEEccCccchhcCCEEEEEeCCeEeeecChhHH
Q 001189 262 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE--LSGK-----TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 262 ~~~~illLDEpts~LD~~~~~~i~~~~~~~~--~~~~-----tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
.+|++ |++||+.....+.+.+.+.. ..|. |++++||+++ -..||++++|.+|+|+.+++.+++
T Consensus 184 ~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 184 GEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp TCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred CCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 78887 99999999999887544433 2477 8999999998 556899999999999998876654
No 162
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.67 E-value=1.1e-19 Score=210.65 Aligned_cols=175 Identities=17% Similarity=0.113 Sum_probs=139.6
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEecCCCChHHhhhceEEEcC-----CCcccc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDLRKILGIIPQ-----SPVLFS 832 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-----~~~lf~ 832 (1128)
++|++++ +++|+.++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .++..+++++| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677776 8999999999999999999999999999998 899987776653 2 35778999999 888898
Q ss_pred ccHhhccccCCCC-------CHHHHHHHHHHhcH-------------HHHHH----------------HccCCcchhhhc
Q 001189 833 GTVRFNLDPFSEH-------SDADLWEALERAHL-------------KDAIR----------------RNSLGLDAQVSE 876 (1128)
Q Consensus 833 ~Tv~~nl~~~~~~-------~~~~i~~~l~~~~l-------------~~~i~----------------~lp~Gldt~v~e 876 (1128)
.+++.||....+. +++.+..+++.++. .+.++ .++.++++.+++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 9999999653322 45666666666432 11111 245678888888
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCE--EEEeccccCCCHH----H-----HHHHHHHHHHHcCCcEEEEeecCchh
Q 001189 877 AGENFSVGQRQLLSLSRALLRRSKI--LVLDEATAAVDVR----T-----DALIQKTIREEFKSCTMLIIAHRLNT 941 (1128)
Q Consensus 877 ~g~~LSgGqrqrl~lArall~~p~i--LlLDEpTs~lD~~----t-----~~~i~~~l~~~~~~~Tvi~vtH~l~~ 941 (1128)
++..+|+| ||++++++++.+|+| +|+||+|+.+|.. + +..++++++...+|+|.+.++||+..
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 87778999 899999999999999 9999999999965 3 34678888877789999999999863
No 163
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.66 E-value=2.5e-17 Score=205.54 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=117.4
Q ss_pred ccEEEEEEEEEeCC---CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEecCCCChHHh
Q 001189 742 GSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 742 g~i~~~~v~~~y~~---~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
+.|++++. +++- ....+++|+||+ |++++|+||||||||||+++|.|+.. |+.|.+. + ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p--a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P--AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S--SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e--hh
Confidence 45888887 3432 234789999998 99999999999999999999999874 6778652 1 12
Q ss_pred hhceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh-
Q 001189 818 RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL- 895 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral- 895 (1128)
+..+++++| +|.. ++.+|+.. .+|+|++|++.+|+++
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~ 651 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILK 651 (765)
T ss_dssp EEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHH
Confidence 456888877 4432 55555421 3789999999999999
Q ss_pred -ccCCCEEEEecc---ccCCCHHHH-HHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEe
Q 001189 896 -LRRSKILVLDEA---TAAVDVRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 959 (1128)
Q Consensus 896 -l~~p~iLlLDEp---Ts~lD~~t~-~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~ 959 (1128)
+.+|+++||||| |+++|..+. ..+.+.|.+ .++|+|++||+.+....| .-.+.++++...
T Consensus 652 ~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 652 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEEE
T ss_pred hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEEE
Confidence 999999999999 999999876 478888876 589999999998876545 223445555444
No 164
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.66 E-value=2.8e-16 Score=199.47 Aligned_cols=168 Identities=15% Similarity=0.070 Sum_probs=117.5
Q ss_pred CcEEEEeEEEEeCC--CCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHH--------hcCCCCCCCCceeecCcEE
Q 001189 118 PAISIRNGYFSWDS--KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--------LGELPPVSDASAVIRGTVA 187 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~--~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l--------~G~~~~~~g~~~~~~~~i~ 187 (1128)
..+.++++..-+-. .+++.+++|++|++++|++++|+|||||||||+++.+ .|.+-|..+. .++
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~------~~~ 703 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA------EVS 703 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE------EEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc------cch
Confidence 35777776433321 1235799999999999999999999999999999999 5544442211 111
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCC
Q 001189 188 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV--YSNSD 265 (1128)
Q Consensus 188 ~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal--~~~~~ 265 (1128)
++. .++. ..++.+.+ ...+|+|++++..+|+++ +.+|+
T Consensus 704 ~~d---~i~~-----------------------~ig~~d~l--------------~~~lStf~~e~~~~a~il~~a~~~s 743 (934)
T 3thx_A 704 IVD---CILA-----------------------RVGAGDSQ--------------LKGVSTFMAEMLETASILRSATKDS 743 (934)
T ss_dssp CCS---EEEE-----------------------ECC-----------------------CHHHHHHHHHHHHHHHCCTTC
T ss_pred HHH---HHHH-----------------------hcCchhhH--------------HHhHhhhHHHHHHHHHHHHhccCCc
Confidence 110 0110 01111111 135888888888888888 99999
Q ss_pred EEEEeCcCCCcCHHHHHHHHHHHHccc-c-CCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHH
Q 001189 266 VFIFDDPLSALDAHVGRQVFDRCIRGE-L-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 331 (1128)
Q Consensus 266 illLDEpts~LD~~~~~~i~~~~~~~~-~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 331 (1128)
++||||||+|+|+.....+...++... . .|.|+|++||+.+....+|++..+.+|++...++.+++
T Consensus 744 LlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 744 LIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999999998887754454432 2 48999999999888888999999999999887766554
No 165
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.65 E-value=3.1e-18 Score=195.94 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=112.1
Q ss_pred eeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee------------------cCcEEEEecCCC-CC-cc
Q 001189 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSW-IF-NA 198 (1128)
Q Consensus 139 ~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~-l~-~~ 198 (1128)
+.+||++++|++++|+|+||||||||++.|+|.++|++|.+... +..|+|++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 45889999999999999999999999999999998876643221 125899999987 65 67
Q ss_pred cHHHHHhcCCC--CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCcCC
Q 001189 199 TVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLS 274 (1128)
Q Consensus 199 Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~--illLDEpts 274 (1128)
|++||+.++.. .+. ..++.+++. ........+|| |||++||||+..+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~d~----~lldt~Gl~-----------~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV----VLCDTSGRL-----------HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTCSE----EEEECCCCS-----------SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCCHH----HHHHhcCCC-----------hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 99999976421 100 001111111 00111123588 999999999999999 99999 999
Q ss_pred CcCHHHHHHHHHHHHccccCCcEEEEEccCcc---------chh-cCCEEEEEeCCe
Q 001189 275 ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH---------FLS-QVDRIILVHEGM 321 (1128)
Q Consensus 275 ~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~---------~l~-~~d~i~~l~~G~ 321 (1128)
+||+.....-+. ...|.|+|++||.-. .+. ..+.|..+..|+
T Consensus 289 glD~~~~~~~~~-----~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 289 GLNMLPQAREFN-----EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGGGHHHHHHHH-----HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CCCHHHHHHHHH-----HhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 999986533221 124789999999322 222 247888888886
No 166
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.65 E-value=1.1e-16 Score=189.67 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=67.2
Q ss_pred CCChhHHHHHHHHHHhc----cCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEEeecCchhhhhcCEEEEEe
Q 001189 880 NFSVGQRQLLSLSRALL----RRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLLD 952 (1128)
Q Consensus 880 ~LSgGqrqrl~lArall----~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~vtH~l~~~~~~D~i~vl~ 952 (1128)
.||||||||++||++|+ ++|++|||||||++||+.....+.+.|++... +.++|+|||+...+..||++++|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 39999999999999999 68999999999999999999999999998753 689999999988777799999986
No 167
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.65 E-value=2e-18 Score=212.19 Aligned_cols=190 Identities=13% Similarity=0.228 Sum_probs=122.2
Q ss_pred cEEEEEEEEEeCCCCCCceeee----------eEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEecCC
Q 001189 743 SIKFEDVVLRYRPELPPVLHGL----------SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAK 811 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~v----------sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-~~G~I~i~g~~i~~ 811 (1128)
.++++|+++.|+....++|+.+ +++++. +||+||||||||||+++|.|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4889999999964333455444 366664 999999999999999999999989 79999999998632
Q ss_pred ---CChHHhhhceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 812 ---FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 812 ---~~~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
-....+|+.++|+||++.++.. ||++|+... ... +.. .+..+| ++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-----------~~~------~~~-----------~~~~~s---~~ 135 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-----------QNA------IAG-----------EGMGIS---HE 135 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-----------HHH------HHC-----------SSSCCC---SC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHH-----------HHH------hcC-----------Cccccc---hH
Confidence 1234578899999999988765 888887421 111 000 011122 23
Q ss_pred HHHHHHHhccCCCEEEEecc------ccCCCHHHHHHHHHHHHHHcC---CcEEEEeecCchhhh--------h-----c
Q 001189 888 LLSLSRALLRRSKILVLDEA------TAAVDVRTDALIQKTIREEFK---SCTMLIIAHRLNTII--------D-----C 945 (1128)
Q Consensus 888 rl~lArall~~p~iLlLDEp------Ts~lD~~t~~~i~~~l~~~~~---~~Tvi~vtH~l~~~~--------~-----~ 945 (1128)
++.++.+....|+++|+||| |++||+...+.+.+.++++.. +.++++++|+++... . .
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 44455555668999999999 999999999999999998542 468889999987431 1 3
Q ss_pred CEEEEEeCCEEEEecChhHHh
Q 001189 946 DRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 946 D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
..|+|+.++.+++.|+++++.
T Consensus 216 rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 216 RTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SEEEEEECGGGSSSSSTTCCC
T ss_pred ceEEEecchhhcCcccHHHHH
Confidence 678999999999888876554
No 168
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.65 E-value=4.5e-17 Score=175.56 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=99.1
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-------CCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhcc
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-------ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 839 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl 839 (1128)
.|++||+++|+||||||||||+++|+|.+.| ..|.|++++.+. .. ++++++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999996655 445788887542 11 2356677777776666888887
Q ss_pred ccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh-------ccCCCEEEEeccccCCC
Q 001189 840 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL-------LRRSKILVLDEATAAVD 912 (1128)
Q Consensus 840 ~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral-------l~~p~iLlLDEpTs~lD 912 (1128)
.+.......+ +++.+..++++ ..+|++|+|||||+.+|
T Consensus 95 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAFNSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECCSHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecCChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 6543222211 11222223333 34899999999999999
Q ss_pred HH-------HH-----HHHHHHHHHHc--CCcEEEEeecCchh----hhh-cCEEEEEeCC
Q 001189 913 VR-------TD-----ALIQKTIREEF--KSCTMLIIAHRLNT----IID-CDRILLLDSG 954 (1128)
Q Consensus 913 ~~-------t~-----~~i~~~l~~~~--~~~Tvi~vtH~l~~----~~~-~D~i~vl~~G 954 (1128)
++ .+ ..+.+.|.+.. .++|||+|||.... +.. ||++++|++|
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 84 22 24555555433 38999999995554 766 9999999875
No 169
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.65 E-value=3.6e-16 Score=156.75 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=69.6
Q ss_pred CCCCCCChHHHHHHHHH------HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEE
Q 001189 241 ERGVNISGGQKQRVSMA------RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 314 (1128)
Q Consensus 241 ~~g~~LSGGQkqRiaLA------Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 314 (1128)
....+||||||||++|| |||+.+|+++||||||++||+.+.+++.+.+......|+|+|+|||+.+....||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 34578999999999876 999999999999999999999999999886554444589999999999767779999
Q ss_pred EEE--eCCe
Q 001189 315 ILV--HEGM 321 (1128)
Q Consensus 315 ~~l--~~G~ 321 (1128)
++| ++|.
T Consensus 133 i~l~~~~g~ 141 (148)
T 1f2t_B 133 IRISLENGS 141 (148)
T ss_dssp EEEEEETTE
T ss_pred EEEEcCCCe
Confidence 999 4554
No 170
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.65 E-value=1.4e-16 Score=198.94 Aligned_cols=145 Identities=13% Similarity=0.100 Sum_probs=107.4
Q ss_pred CcEEEEeEEEEeCCC--CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC-CCCCCcee-ecCcEEEEecCC
Q 001189 118 PAISIRNGYFSWDSK--AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDASAV-IRGTVAYVPQVS 193 (1128)
Q Consensus 118 ~~i~~~~~~f~~~~~--~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-~~~g~~~~-~~~~i~~v~Q~~ 193 (1128)
+.+.++++ ++|-- +++++++|+||+ |++++|+||||||||||+++++|... +..|.... .+..+++++|
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~-- 621 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-- 621 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE--
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH--
Confidence 35888877 33320 246899999999 99999999999999999999999763 55554321 1234777766
Q ss_pred CCC-cccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEe
Q 001189 194 WIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV--YSNSDVFIFD 270 (1128)
Q Consensus 194 ~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal--~~~~~illLD 270 (1128)
+| ..++.||+.. .+|+|+++++.+|+++ +.+|+++|||
T Consensus 622 -i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLD 662 (765)
T 1ewq_A 622 -IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEATENSLVLLD 662 (765)
T ss_dssp -EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEE
T ss_pred -hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 33 3456655432 3689999999999999 9999999999
Q ss_pred Cc---CCCcCHHHHH-HHHHHHHccccCCcEEEEEccCccchhcC
Q 001189 271 DP---LSALDAHVGR-QVFDRCIRGELSGKTRVLVTNQLHFLSQV 311 (1128)
Q Consensus 271 Ep---ts~LD~~~~~-~i~~~~~~~~~~~~tvilvtH~~~~l~~~ 311 (1128)
|| |++||+.+.. .+.+.+.. .|.|+|++||+.+....+
T Consensus 663 EpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 663 EVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTALG 704 (765)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTCC
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhh
Confidence 99 9999998764 56665433 578999999998776554
No 171
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.64 E-value=3.3e-16 Score=156.97 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=70.1
Q ss_pred cCCCCCChhHHHHHHHH------HHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-CCcEEEEeecCchhhhhcCEE
Q 001189 876 EAGENFSVGQRQLLSLS------RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRI 948 (1128)
Q Consensus 876 e~g~~LSgGqrqrl~lA------rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~-~~~Tvi~vtH~l~~~~~~D~i 948 (1128)
....+||||||||++|| ||++.+|++|||||||++||+.+...+.+.|++.. .++|||+|||+++....||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 44568999999999876 99999999999999999999999999999999864 478999999999655559999
Q ss_pred EEE--eCCE
Q 001189 949 LLL--DSGR 955 (1128)
Q Consensus 949 ~vl--~~G~ 955 (1128)
++| ++|.
T Consensus 133 i~l~~~~g~ 141 (148)
T 1f2t_B 133 IRISLENGS 141 (148)
T ss_dssp EEEEEETTE
T ss_pred EEEEcCCCe
Confidence 999 4554
No 172
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.64 E-value=3.4e-19 Score=188.55 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=118.4
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEecCCCChHHhhhceEEEcCCCccccccH
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVE-------------LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 835 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv 835 (1128)
++|++++|+||||||||||+++|.|+++ |..|+ ++|.++...+...+|+.+ +|++++|.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999886 78897 599988888888898876 79999999999
Q ss_pred hhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH-HhccCCCEEEEeccccCCCHH
Q 001189 836 RFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR-ALLRRSKILVLDEATAAVDVR 914 (1128)
Q Consensus 836 ~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr-all~~p~iLlLDEpTs~lD~~ 914 (1128)
..|+. . .++++++++++.....- .+..+.|+++.... ++ .+| +++.+|++++|||+|+++|.+
T Consensus 77 ~~n~~-g--~~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 77 SGNLY-G--TSKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp TTEEE-E--EEHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCccC-C--CCHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 99983 2 25677887776521100 01123344443221 12 566 889999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeC
Q 001189 915 TDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 953 (1128)
Q Consensus 915 t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~ 953 (1128)
+++.|++.|.+..++ +.++| +. ..||+|+|+++
T Consensus 141 ~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 999999998875444 35677 33 67999988764
No 173
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.64 E-value=1.5e-17 Score=191.10 Aligned_cols=167 Identities=18% Similarity=0.116 Sum_probs=115.0
Q ss_pred Cceeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCC----ce-EEECCEecCCCChHHhhhceEEEcCCCcc
Q 001189 759 PVLHGL-SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELER----GR-ILIDGFDIAKFGLMDLRKILGIIPQSPVL 830 (1128)
Q Consensus 759 ~~l~~v-sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~--~p~~----G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 830 (1128)
+.|+.+ .+.|++|++++|+||||||||||++.|++.+ +|++ |+ |+|++.+.. .++++++++|.+.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 356665 6899999999999999999999999999998 6666 67 999986641 25678889999988
Q ss_pred ccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc-------cCCCEEE
Q 001189 831 FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL-------RRSKILV 903 (1128)
Q Consensus 831 f~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall-------~~p~iLl 903 (1128)
+..++.+|+.+..... |.+|+|++.++++++ .+|++||
T Consensus 192 ~~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 192 DPDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp CHHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred CHHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 8778999986542222 234555555555555 6899999
Q ss_pred EeccccCCCHHH------------HHHHHHHHHHHc--CCcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 904 LDEATAAVDVRT------------DALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 904 LDEpTs~lD~~t------------~~~i~~~l~~~~--~~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
+||||+.+|++. ...+...|.++. .++|||+++|....... ++.+.+...|++++++....|.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 999999999863 233444444433 47999999998876543 4456677788888777765553
No 174
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.63 E-value=5.6e-17 Score=186.04 Aligned_cols=147 Identities=20% Similarity=0.216 Sum_probs=107.2
Q ss_pred EEEEEEeCCCCCCceeeeeE-------EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEecCCCChHHhh
Q 001189 747 EDVVLRYRPELPPVLHGLSF-------TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 747 ~~v~~~y~~~~~~~l~~vsl-------~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~-~G~I~i~g~~i~~~~~~~~r 818 (1128)
.+++++|.+...+.|+++.+ .+.+|+.++|+||||||||||+++|+|+++|+ +|.|...+.++ .+. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 57788886555567888776 78899999999999999999999999999997 56665443322 211 22
Q ss_pred hceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001189 819 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 898 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~ 898 (1128)
...++++|.+.... . ++-.+ +|||||..+
T Consensus 168 ~~~~~v~q~~~~~~-----~------------------------------------------~~~~~----~La~aL~~~ 196 (356)
T 3jvv_A 168 SKKCLVNQREVHRD-----T------------------------------------------LGFSE----ALRSALRED 196 (356)
T ss_dssp CSSSEEEEEEBTTT-----B------------------------------------------SCHHH----HHHHHTTSC
T ss_pred ccccceeeeeeccc-----c------------------------------------------CCHHH----HHHHHhhhC
Confidence 23445555432110 0 11111 999999999
Q ss_pred CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCC
Q 001189 899 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 954 (1128)
Q Consensus 899 p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G 954 (1128)
|++|++|||| |.++.+.+.++. ..|+|||+++|+.+.+..|||+++|..|
T Consensus 197 PdvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred cCEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999 777766555543 3589999999999999779999988654
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=2.3e-17 Score=175.16 Aligned_cols=169 Identities=18% Similarity=0.247 Sum_probs=101.9
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-----CCCCceEEE-------CCEecC-
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILI-------DGFDIA- 810 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~-----~p~~G~I~i-------~g~~i~- 810 (1128)
|+++|++|+|+ . +++++ |.+++|++++|+|+||||||||++.|.|.. .|+.|.+.+ ++..+.
T Consensus 4 l~~~~~~~~~~-~--~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMS-A--PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEE-E--SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheee-c--CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 78999999996 2 58888 889999999999999999999999999998 888887754 222221
Q ss_pred --CCC--------hHHhhhceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCC
Q 001189 811 --KFG--------LMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAG 878 (1128)
Q Consensus 811 --~~~--------~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~-v~e~g 878 (1128)
... ...+++.++++.|+...+++ .+..++.......+.++.+.+ .. .++... +....
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---------~~--~~~~~~~v~nK~ 147 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---------VD--SNIAVLVLLTKA 147 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---------HH--TTCCEEEEEECG
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---------HH--cCCCeEEEEecc
Confidence 111 12334445555554322222 233333211111112222222 21 122222 35555
Q ss_pred CCCChhHHHH-HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC
Q 001189 879 ENFSVGQRQL-LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK 928 (1128)
Q Consensus 879 ~~LSgGqrqr-l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~ 928 (1128)
..+|+||||| +..+++++.+|+++++|||||++|......+.+.|.+...
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 6799999999 8999999999999999999999999999999999987543
No 176
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.62 E-value=4.1e-17 Score=179.74 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=99.5
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC-CCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR 214 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~ 214 (1128)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|.+......+.|++|++.-+ ..
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~-------------v~--- 76 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSI-------------VN--- 76 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSE-------------EE---
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCccee-------------ee---
Confidence 5899999 9999999999999999999999999999887 665554444556655543110 00
Q ss_pred HHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccC
Q 001189 215 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 294 (1128)
Q Consensus 215 ~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~ 294 (1128)
...+|....+| |++|||||..+|++++||||| |+++...+.+. ...
T Consensus 77 ---------------------q~~~gl~~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~----~~~ 122 (261)
T 2eyu_A 77 ---------------------QREVGEDTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRA----AET 122 (261)
T ss_dssp ---------------------EEEBTTTBSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHH----HHT
T ss_pred ---------------------HHHhCCCHHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHH----Hcc
Confidence 00122222233 899999999999999999999 99887655442 235
Q ss_pred CcEEEEEccCccchhcCCEEEEEeC
Q 001189 295 GKTRVLVTNQLHFLSQVDRIILVHE 319 (1128)
Q Consensus 295 ~~tvilvtH~~~~l~~~d~i~~l~~ 319 (1128)
|.++++++|+.+....+|+++.|..
T Consensus 123 g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 123 GHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp TCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcchHHHHHHHHhhhcC
Confidence 8999999999987777899988754
No 177
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.62 E-value=6.1e-19 Score=204.45 Aligned_cols=176 Identities=13% Similarity=0.122 Sum_probs=127.2
Q ss_pred ceeeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCCCC----ceEEE----CCEecCCCChHHhhhceEEEcCCCc
Q 001189 760 VLHGLSFTIPP--SDKVGIVGRTGAGKSSMLNTLFRIVELER----GRILI----DGFDIAKFGLMDLRKILGIIPQSPV 829 (1128)
Q Consensus 760 ~l~~vsl~i~~--Ge~v~ivG~~GsGKSTll~~l~g~~~p~~----G~I~i----~g~~i~~~~~~~~r~~i~~v~Q~~~ 829 (1128)
+.+.|+++|++ |++++|+||||||||||+++|.|+++|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 99987 35555 4555556 56999999999
Q ss_pred cccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc-cCCCEEEEec--
Q 001189 830 LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL-RRSKILVLDE-- 906 (1128)
Q Consensus 830 lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall-~~p~iLlLDE-- 906 (1128)
+|.+|+++||.++....... .. ..+|+|++|+..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~------------~~---------------~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITT------------QA---------------FCIQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHH------------HH---------------HHHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred HHHHhccCCEEEEeCCchHH------------HH---------------HHHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 89999999997653210000 00 013455677777777775 5899999998
Q ss_pred -cc------cCCCHHHHHHHHHHHHHHcC--CcEEEEeecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001189 907 -AT------AAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 907 -pT------s~lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~~~~-~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
|+ .++|+..+..+.+.|++..+ +.++|+++|. .+..+ +|++.++++ +++.|+++||.+
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 54 57898888888888876544 7888888875 33333 677666653 556677777754
No 178
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.61 E-value=3.2e-17 Score=184.63 Aligned_cols=163 Identities=16% Similarity=0.088 Sum_probs=80.1
Q ss_pred EEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCEecCCCChHHhhhceEEEc
Q 001189 747 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-VELERGRILIDGFDIAKFGLMDLRKILGIIP 825 (1128)
Q Consensus 747 ~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 825 (1128)
+|++++|+. ..++++++|+| +|+|+||+|||||++.|+|. ..|++| |.++|.++.. . .-++.+++++
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t--~~~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T--VQIEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c--ceEeeEEEEe
Confidence 478888864 36999999998 99999999999999999998 889999 9888887643 1 1245689999
Q ss_pred CCCccc-cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 001189 826 QSPVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 904 (1128)
Q Consensus 826 Q~~~lf-~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlL 904 (1128)
|++.++ .-|+.++..+.......+.++ .+.+.+... .+..+ .++|||||||+.+|||+. +|++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~-----~l~~~l~~~---~~~~~----~~~sgg~rqrv~~ara~~----ll~l 133 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINCRDCFK-----TIISYIDEQ---FERYL----HDESGLNRRHIIDNRVHC----CFYF 133 (301)
T ss_dssp C---CCEEEEEEEEC-----------CT-----THHHHHHHH---HHHHH----HHHTSSCCTTCCCCCCCE----EEEE
T ss_pred cCCCcccCcchhhhhhhhhhcCcHHHHH-----HHHHHHHHH---HHHHH----HHhCHHhhhhhhhhhhhh----eeee
Confidence 987654 348888775432111101000 011111110 11122 359999999999999986 9999
Q ss_pred eccccC-CCHHHHHHHHHHHHHHcC--CcEEEEeecCchh
Q 001189 905 DEATAA-VDVRTDALIQKTIREEFK--SCTMLIIAHRLNT 941 (1128)
Q Consensus 905 DEpTs~-lD~~t~~~i~~~l~~~~~--~~Tvi~vtH~l~~ 941 (1128)
||||++ ||+... +.+++..+ +.++|+..||+.+
T Consensus 134 dePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 134 ISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp ECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred ecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 999985 999874 33443332 5788888999753
No 179
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.59 E-value=2.7e-17 Score=172.19 Aligned_cols=148 Identities=18% Similarity=0.186 Sum_probs=103.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHH
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEK 217 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~ 217 (1128)
|++++|+||||||||||+++|+|+++ ++| ... ++..+||++|+. +++ ++|+.-- .+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~---~g~-~~~l~~~-~~~------ 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL---SGT-RGPLSRV-GLE------ 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET---TSC-EEEEEEC-CCC------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec---ccc-eehhhcc-ccc------
Confidence 78999999999999999999999987 666 321 245689999975 222 1121100 000
Q ss_pred HHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH-HHHH---HHccCCCEEEEeC--cCCCcCHHHHHHHHHHHHcc
Q 001189 218 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV-SMAR---AVYSNSDVFIFDD--PLSALDAHVGRQVFDRCIRG 291 (1128)
Q Consensus 218 ~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi-aLAR---al~~~~~illLDE--pts~LD~~~~~~i~~~~~~~ 291 (1128)
.-+......+|+.+..+|||||+++ +|++ |+..+|+++|||| |+..+|+...+.+.+. +.
T Consensus 68 ------------~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~-l~- 133 (189)
T 2i3b_A 68 ------------PPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT-LS- 133 (189)
T ss_dssp ------------CCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH-HH-
T ss_pred ------------CCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH-Hh-
Confidence 0001122368888899999999998 5565 6899999999999 8999999887777653 33
Q ss_pred ccCCcEEEE--Ec--cCccchhcCCEEEEEeCCeEeee
Q 001189 292 ELSGKTRVL--VT--NQLHFLSQVDRIILVHEGMVKEE 325 (1128)
Q Consensus 292 ~~~~~tvil--vt--H~~~~l~~~d~i~~l~~G~i~~~ 325 (1128)
..+++|+ ++ |+.+ +..+|+|..+++|+|.+.
T Consensus 134 --~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 134 --TPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp --CSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred --CCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 2345554 34 9885 556678777788888763
No 180
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.59 E-value=7.5e-18 Score=179.65 Aligned_cols=139 Identities=14% Similarity=0.154 Sum_probs=105.1
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccc---cHhhccccC-C
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG---TVRFNLDPF-S 843 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~---Tv~~nl~~~-~ 843 (1128)
.++|+++||+||||||||||+++|.|++.| .++|++|++.++.. |+++|+... .
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 58999999988743 676654321 1
Q ss_pred ---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH----HHHHHHHHHhccCCCEEEEeccccC------
Q 001189 844 ---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ----RQLLSLSRALLRRSKILVLDEATAA------ 910 (1128)
Q Consensus 844 ---~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq----rqrl~lArall~~p~iLlLDEpTs~------ 910 (1128)
....+.+.++++..++.+. +...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLP-----------VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCC-----------EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCC-----------cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 1234455555555433221 122244678885 5789999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHHc--CCcEEEEeecCc
Q 001189 911 -VDVRTDALIQKTIREEF--KSCTMLIIAHRL 939 (1128)
Q Consensus 911 -lD~~t~~~i~~~l~~~~--~~~Tvi~vtH~l 939 (1128)
||+.++..+++.+.+.. +++|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999887642 588999999984
No 181
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.59 E-value=5.2e-17 Score=177.61 Aligned_cols=146 Identities=15% Similarity=0.134 Sum_probs=93.8
Q ss_pred CCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce--eecCcEEEEecCCCCCcccHHHHHhcCC--
Q 001189 133 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA--VIRGTVAYVPQVSWIFNATVRDNILFGS-- 208 (1128)
Q Consensus 133 ~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~--~~~~~i~~v~Q~~~l~~~Tv~eni~~g~-- 208 (1128)
+++++|+|+||++++|++++|+||||||||||+++|+|.+ |... ..+..++|++|++.....|+.+|+.+..
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQ 85 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhhhhhccC
Confidence 3467999999999999999999999999999999999976 2111 2356799999997444679999986421
Q ss_pred -CC------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHH
Q 001189 209 -AF------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 281 (1128)
Q Consensus 209 -~~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~ 281 (1128)
.+ +.+.+.+.++. + ..+.... ...||+||+||+++ +++..+|+++|||||....|..
T Consensus 86 ~~~~~~~~~~~~~~~~~L~~------l---~~~~~~~----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~-- 149 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLKN------I---VEGKTVE----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE-- 149 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHHH------H---HTTCCEE----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--
T ss_pred CCCCCcccccHHHHHHHHHH------H---HCCCCee----cccccccccCccCc-eEEecCCCEEEEeCccccccHH--
Confidence 11 12222333222 1 1222222 25799999999988 6888999999999998888764
Q ss_pred HHHHHHHHccccCCcEEEEEccCcc
Q 001189 282 RQVFDRCIRGELSGKTRVLVTNQLH 306 (1128)
Q Consensus 282 ~~i~~~~~~~~~~~~tvilvtH~~~ 306 (1128)
+.+ ..+.+++++||+..
T Consensus 150 --l~~------~~~~~i~v~th~~~ 166 (245)
T 2jeo_A 150 --IRD------MFHLRLFVDTDSDV 166 (245)
T ss_dssp --HHT------TCSEEEEEECCHHH
T ss_pred --HHH------hcCeEEEEECCHHH
Confidence 211 13689999999743
No 182
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.59 E-value=1.9e-15 Score=169.85 Aligned_cols=170 Identities=12% Similarity=0.110 Sum_probs=106.1
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhc---CCCC-
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF---GSAF- 210 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~---g~~~- 210 (1128)
.++|+++++.+++|++++|+|+||||||||++.|+|.+.|..|. .|.|+..+.. ...++..+.. +.+.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~------~v~~~~~e~~--~~~~~~r~~~~~~~~~~~ 93 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK------KVGLAMLEES--VEETAEDLIGLHNRVRLR 93 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCC------CEEEEESSSC--HHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCC------eEEEEeCcCC--HHHHHHHHHHHHcCCChh
Confidence 35899999999999999999999999999999999999876552 2444443321 1112222210 1111
Q ss_pred ----------CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHH-HHHHHHHHHHccCCCEEEEeCcCC---C-
Q 001189 211 ----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ-KQRVSMARAVYSNSDVFIFDDPLS---A- 275 (1128)
Q Consensus 211 ----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ-kqRiaLARal~~~~~illLDEpts---~- 275 (1128)
+.+.+.+.++. .++..+ -.+.+....+|.+| +||+. |+++..+|+++++||||+ +
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~-----~l~~~~----l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 94 QSDSLKREIIENGKFDQWFDE-----LFGNDT----FHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp GCHHHHHHHHHHTHHHHHHHH-----HHSSSC----EEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred hccccccCCCCHHHHHHHHHH-----HhccCC----EEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 01111111111 111111 01223334689999 77777 999999999999999999 4
Q ss_pred --cCH-HHHHHHHHHHHcccc-CCcEEEEEccCc--c--------------------chh-cCCEEEEEeCCeE
Q 001189 276 --LDA-HVGRQVFDRCIRGEL-SGKTRVLVTNQL--H--------------------FLS-QVDRIILVHEGMV 322 (1128)
Q Consensus 276 --LD~-~~~~~i~~~~~~~~~-~~~tvilvtH~~--~--------------------~l~-~~d~i~~l~~G~i 322 (1128)
+|. .....+.+.+..... .|.|+|++||+. + .+. .||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 555667665544333 389999999995 3 444 5899999998874
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=1.6e-16 Score=185.64 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=100.4
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+.|.++|++++|+. ..+++|++|+| +|+|+||||||||+++|+|...|..| .+|.++...+ ...+..+
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeE
Confidence 45899999999964 37999999998 99999999999999999999886665 2343332111 1124568
Q ss_pred EEEcCCCccc-cccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001189 822 GIIPQSPVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 900 (1128)
Q Consensus 822 ~~v~Q~~~lf-~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~ 900 (1128)
++++|++.++ ..||.+|+.+.......+.++. +.+++.. .++.+++||++|||+++++|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccCCC
Confidence 9999998776 4589998865432221111111 1222221 245567789999999999999
Q ss_pred ---EEEEeccc-cCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhh
Q 001189 901 ---ILVLDEAT-AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 901 ---iLlLDEpT-s~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~ 942 (1128)
+|++|||| .++|+..... ++.+..+.++|+|.|..+.+
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred eeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99999999 6999876433 33333578899999887654
No 184
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.58 E-value=4.5e-16 Score=167.72 Aligned_cols=164 Identities=10% Similarity=-0.009 Sum_probs=113.9
Q ss_pred CceeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhh---ceEEEcCCCcccccc
Q 001189 759 PVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK---ILGIIPQSPVLFSGT 834 (1128)
Q Consensus 759 ~~l~~vsl-~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~T 834 (1128)
+.|+++.. .+++|+.++|+||||||||||++.|++...+.+|.|.+.+.+. +...++. .+++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh----
Confidence 57888888 8999999999999999999999999999888888888766443 3333332 23443333211
Q ss_pred HhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEeccccCC-
Q 001189 835 VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAAV- 911 (1128)
Q Consensus 835 v~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~--iLlLDEpTs~l- 911 (1128)
+++........ ... + ..+. ...|.++.++...+.+...+|+ +|++||||+.+
T Consensus 83 --~~~~~~~~~~~--------------~~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 83 --KKLIIIDALMK--------------EKE--D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp --TTEEEEECCC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred --CCEEEEecccc--------------ccC--c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 01111100000 000 0 0011 1348999988888887778999 99999999888
Q ss_pred -CHHHHHHHHHHHHHHc--CCcEEEEeecCc--------hhhhh-cCEEEEEeCC
Q 001189 912 -DVRTDALIQKTIREEF--KSCTMLIIAHRL--------NTIID-CDRILLLDSG 954 (1128)
Q Consensus 912 -D~~t~~~i~~~l~~~~--~~~Tvi~vtH~l--------~~~~~-~D~i~vl~~G 954 (1128)
|+...+.+.+.|++.. .++|||+++|.. ..+.. ||+|++|++.
T Consensus 138 ~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 138 DKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9988888888887753 478999999999 44666 9999999864
No 185
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.57 E-value=1.1e-15 Score=193.23 Aligned_cols=167 Identities=14% Similarity=0.082 Sum_probs=107.8
Q ss_pred cEEEEEEEEEe-----CCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHh
Q 001189 743 SIKFEDVVLRY-----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 817 (1128)
Q Consensus 743 ~i~~~~v~~~y-----~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 817 (1128)
.|.+++...-. ..+...+++|++|++++|++++|+|||||||||+++++.++.-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 57777653322 11235799999999999999999999999999999998754211
Q ss_pred hhceEEEcCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 818 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 818 r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
.+.-.++|++..-+ .+.+++. ...++.+.+ ..+-.++|+|++|+..++++ +.
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i~--------------~~ig~~d~l-----------~~~~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGIF--------------TRMGAADNI-----------YKGRSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEEE--------------EEC---------------------CCHHHHHHHHHHHHHH-CC
T ss_pred hhcCccccchhhhh--hHHHHHH--------------HhCChHHHH-----------HHhHHHhhHHHHHHHHHHHh-cc
Confidence 11112333332110 0001110 001111111 11225799999999999999 88
Q ss_pred CCCEEEEeccccCCCHHHHHHHH-HHHHHHc--CCcEEEEeecCchhhhhcCEEEE-EeCCEEE
Q 001189 898 RSKILVLDEATAAVDVRTDALIQ-KTIREEF--KSCTMLIIAHRLNTIIDCDRILL-LDSGRVL 957 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~-~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~v-l~~G~i~ 957 (1128)
+|++|||||||+|+|+.....+. ..++.+. .++|+|++||+++...-||+.-- +.++++.
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~ 815 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMG 815 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEE
Confidence 99999999999999998877776 5665542 48999999999887765665421 3444543
No 186
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.57 E-value=3.3e-16 Score=175.99 Aligned_cols=150 Identities=16% Similarity=0.090 Sum_probs=100.2
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh-H---Hh--hhceEEEcCCCccccc-cHhhcccc
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-M---DL--RKILGIIPQSPVLFSG-TVRFNLDP 841 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-~---~~--r~~i~~v~Q~~~lf~~-Tv~~nl~~ 841 (1128)
.+|++++|+||||||||||++.|.|+++|++|+|.++|.|+..... + .+ |..+++++|++.++.. |+++|+..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 3699999999999999999999999999999999999999876542 2 22 4569999999877654 77777632
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEeccccCCCHHHHHHH
Q 001189 842 FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAAVDVRTDALI 919 (1128)
Q Consensus 842 ~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~--iLlLDEpTs~lD~~t~~~i 919 (1128)
. .. .+....+-..+...+.. ...++..++||++||||+..+|+ +|.|| |+++.+ +
T Consensus 180 ~-----------~~-~~~d~~llDt~G~~~~~----~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 180 M-----------KA-RGYDLLFVDTAGRLHTK----HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp H-----------HH-HTCSEEEECCCCCCTTC----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred H-----------Hh-CCCCEEEecCCCCCCch----HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 1 00 00000000011111110 01145666999999999999999 55566 555543 3
Q ss_pred HHHHHHHc--CCcEEEEeecCchh
Q 001189 920 QKTIREEF--KSCTMLIIAHRLNT 941 (1128)
Q Consensus 920 ~~~l~~~~--~~~Tvi~vtH~l~~ 941 (1128)
.+.+++.. .+.|+|++||...+
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHcCCcEEEEECCccc
Confidence 33333322 37899999998543
No 187
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.57 E-value=1.1e-17 Score=178.35 Aligned_cols=140 Identities=21% Similarity=0.244 Sum_probs=105.8
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCc---ccHHHHHhcC--C--CCCHHHHHH
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN---ATVRDNILFG--S--AFEPARYEK 217 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~---~Tv~eni~~g--~--~~~~~~~~~ 217 (1128)
.++|++++|+|+||||||||+++|+|++.| .++|++|++.++. .|+++|+.+. . ..+.+++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLE 72 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHH
Confidence 578999999999999999999999998865 5899999998763 4788876643 2 234455666
Q ss_pred HHHHhCcHHHHhcCCCCCcccccCCCCCCChHH----HHHHHHHHHHccCCCEEEEeCcCCC-------cCHHHHHHHHH
Q 001189 218 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ----KQRVSMARAVYSNSDVFIFDDPLSA-------LDAHVGRQVFD 286 (1128)
Q Consensus 218 ~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQ----kqRiaLARal~~~~~illLDEpts~-------LD~~~~~~i~~ 286 (1128)
.++..++.+.+ ...+..+|+|| +||+++||+++.+|+++++||||++ ||+..+..+.+
T Consensus 73 ~l~~~~~~~~~-----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 73 HAQALLRGLPV-----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp HHHHHHTTCCE-----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred HHHHHHcCCCc-----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 65554333222 22345788885 5789999999999999999999999 99988888877
Q ss_pred HHHcc-ccCCcEEEEEccCc
Q 001189 287 RCIRG-ELSGKTRVLVTNQL 305 (1128)
Q Consensus 287 ~~~~~-~~~~~tvilvtH~~ 305 (1128)
.+.+. ..+|+|++.++|+.
T Consensus 142 ~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 142 RLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHH
Confidence 55443 23588999999974
No 188
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.56 E-value=1.6e-15 Score=191.83 Aligned_cols=159 Identities=15% Similarity=0.075 Sum_probs=103.2
Q ss_pred cEEEEeEEEEe----CCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC-CCCCceeecCcEEEEecCC
Q 001189 119 AISIRNGYFSW----DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-VSDASAVIRGTVAYVPQVS 193 (1128)
Q Consensus 119 ~i~~~~~~f~~----~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-~~g~~~~~~~~i~~v~Q~~ 193 (1128)
.+.+++...-. -..+++++++|++|++++|++++|+||||||||||++++.+..-. ..|... ...-+.++.-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~v--pa~~~~i~~~d 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYV--PAEEATIGIVD 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCB--SSSEEEEECCS
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccc--cchhhhhhHHH
Confidence 46666643211 011246899999999999999999999999999999998753211 001000 00001111111
Q ss_pred CCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 001189 194 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273 (1128)
Q Consensus 194 ~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt 273 (1128)
.+|. ..++.+. +..+..++|+|++|+..++++ +.+|+++||||||
T Consensus 718 ~i~~-----------------------~ig~~d~-----------l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~ 762 (918)
T 3thx_B 718 GIFT-----------------------RMGAADN-----------IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELG 762 (918)
T ss_dssp EEEE-----------------------EC---------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTT
T ss_pred HHHH-----------------------hCChHHH-----------HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCC
Confidence 1110 0011111 112235799999999999999 8999999999999
Q ss_pred CCcCHHHHHHHHHHHHccc--cCCcEEEEEccCccchhcCCEE
Q 001189 274 SALDAHVGRQVFDRCIRGE--LSGKTRVLVTNQLHFLSQVDRI 314 (1128)
Q Consensus 274 s~LD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l~~~d~i 314 (1128)
+|||+.....+...++... ..|.|+|++||+.+....+|+.
T Consensus 763 ~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 763 RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 9999998888875555432 3589999999998877666543
No 189
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.55 E-value=1.2e-15 Score=164.46 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=86.3
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecC--------------CCCCcccHHHHHhcCCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV--------------SWIFNATVRDNILFGSA 209 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~--------------~~l~~~Tv~eni~~g~~ 209 (1128)
.+++|++++|+||||||||||++.|+|.+.+..+.. ...+.+-|+..+ ..++..|+.||+.+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g-~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 98 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEG-GLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVAR- 98 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-CCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEE-
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccC-CCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEe-
Confidence 699999999999999999999999999654432111 012233343333 2222223333333221
Q ss_pred CCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCCh-HHHHHHHHHHHHcc-------CCCEEEEeCcCCCcCHH--
Q 001189 210 FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG-GQKQRVSMARAVYS-------NSDVFIFDDPLSALDAH-- 279 (1128)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSG-GQkqRiaLARal~~-------~~~illLDEpts~LD~~-- 279 (1128)
..++ .|++++..+++++. +|++++||||++.+|+.
T Consensus 99 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~ 143 (231)
T 4a74_A 99 -----------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYI 143 (231)
T ss_dssp -----------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSC
T ss_pred -----------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccC
Confidence 1222 33344555555554 89999999999999984
Q ss_pred -----HH-----HHHHHHHHccc-cCCcEEEEEccCcc----chhc-CCEEEEEeCCe
Q 001189 280 -----VG-----RQVFDRCIRGE-LSGKTRVLVTNQLH----FLSQ-VDRIILVHEGM 321 (1128)
Q Consensus 280 -----~~-----~~i~~~~~~~~-~~~~tvilvtH~~~----~l~~-~d~i~~l~~G~ 321 (1128)
.. +.+++.+.... ..|.|+|++||... .+.. ||++++|++|+
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 11 24555444432 24899999999544 4654 79999998753
No 190
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.54 E-value=8.7e-16 Score=164.63 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=103.7
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEecCCCChHHhhhceEEEcCCCccccc-cH----hhc
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TV----RFN 838 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv----~~n 838 (1128)
-..++|++++|+||||||||||+++|.|+++| ..|.|.+.+.+... ..++.++|+||++.+|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 46789999999999999999999999999986 68999988866532 235679999999988865 55 466
Q ss_pred cccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHH
Q 001189 839 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 918 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~ 918 (1128)
+.++... .|-.++. ++.++..++++||| ||+.+.+.
T Consensus 87 ~~~~~~~------------------------------------yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 87 AEVFGNY------------------------------------YGTSREA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp EEETTEE------------------------------------EEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred HHHHhcc------------------------------------CCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 5432210 0000111 23344457999999 99999999
Q ss_pred HHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 001189 919 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 967 (1128)
Q Consensus 919 i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g~~~~l~~ 967 (1128)
+.+.+. ++.||++++|+++.+.. |+ +.+| .++++++.+
T Consensus 123 i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 123 IRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 999876 57899999999999876 32 5566 567777654
No 191
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.52 E-value=2e-14 Score=147.82 Aligned_cols=77 Identities=22% Similarity=0.337 Sum_probs=69.7
Q ss_pred CCCChhHHHHHHHHHHhc----cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEE--e
Q 001189 879 ENFSVGQRQLLSLSRALL----RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL--D 952 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall----~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl--~ 952 (1128)
..||||||||++|||+++ ++|+++||||||++||+.+.+.+.+.|++..++.++|+|||+...+..||+++.+ +
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~ 142 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMR 142 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEec
Confidence 569999999999999996 5679999999999999999999999999987888999999999888789999966 4
Q ss_pred CCE
Q 001189 953 SGR 955 (1128)
Q Consensus 953 ~G~ 955 (1128)
+|.
T Consensus 143 ~g~ 145 (173)
T 3kta_B 143 DGV 145 (173)
T ss_dssp TTE
T ss_pred CCE
Confidence 664
No 192
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.51 E-value=2.8e-15 Score=171.98 Aligned_cols=139 Identities=18% Similarity=0.215 Sum_probs=99.0
Q ss_pred EeEEEEeCCCCCCCceeeeeE-------EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce-eecCc--------E
Q 001189 123 RNGYFSWDSKAERPTLLNINL-------DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA-VIRGT--------V 186 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl-------~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~-~~~~~--------i 186 (1128)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+.++.+ ..... .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~ 170 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK 170 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc
Confidence 4567777543 3567888776 7788999999999999999999999999988643322 11111 1
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 001189 187 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 266 (1128)
Q Consensus 187 ~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~i 266 (1128)
++++|. .++.. .++-.+ +|||||..+||+
T Consensus 171 ~~v~q~---------------------------------------------~~~~~--~~~~~~----~La~aL~~~Pdv 199 (356)
T 3jvv_A 171 CLVNQR---------------------------------------------EVHRD--TLGFSE----ALRSALREDPDI 199 (356)
T ss_dssp SEEEEE---------------------------------------------EBTTT--BSCHHH----HHHHHTTSCCSE
T ss_pred cceeee---------------------------------------------eeccc--cCCHHH----HHHHHhhhCcCE
Confidence 111111 11111 122222 999999999999
Q ss_pred EEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCC
Q 001189 267 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 320 (1128)
Q Consensus 267 llLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 320 (1128)
+++|||+ |+++.+.+.+. ...|.|+++++|+.+.+..+||++.|..|
T Consensus 200 illDEp~---d~e~~~~~~~~----~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 200 ILVGEMR---DLETIRLALTA----AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp EEESCCC---SHHHHHHHHHH----HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred EecCCCC---CHHHHHHHHHH----HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999 78776555442 34589999999999999888999988654
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.51 E-value=5.4e-16 Score=174.59 Aligned_cols=155 Identities=16% Similarity=0.157 Sum_probs=82.1
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC-CCCCCCC--------ceeecCcEEEEecCC
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE-LPPVSDA--------SAVIRGTVAYVPQVS 193 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~-~~~~~g~--------~~~~~~~i~~v~Q~~ 193 (1128)
+|++++|. .+.++++++|+| +|+|+||+|||||++.|.|. ..|++|- ...-...+++++|++
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC------------------------CEEEEC--
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCC
Confidence 46788885 357999999998 99999999999999999997 7776651 011123579999987
Q ss_pred CCC-cccHHHHHhcCCCCCH-HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 001189 194 WIF-NATVRDNILFGSAFEP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 271 (1128)
Q Consensus 194 ~l~-~~Tv~eni~~g~~~~~-~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDE 271 (1128)
.++ ..||.|+..++...+. +++....+. +.+..+. ...++|||||||+++|||+. ++++||
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~~-----------~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFER-----------YLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHH--HHHHHHH-----------HHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHHH-----------HHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 654 6799998887643211 122222221 1111111 12469999999999999985 999999
Q ss_pred cCCC-cCHHHHHHHHHHHHccccCCcEEEEEccCcc
Q 001189 272 PLSA-LDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 306 (1128)
Q Consensus 272 pts~-LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~ 306 (1128)
||++ ||+... .++..+. ...+.++|+.+||+.
T Consensus 136 Pt~~~Ld~~~~-~~l~~l~--~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 136 PFGHGLKPLDV-AFMKAIH--NKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSSCCHHHH-HHHHHHT--TTSCEEEEECCGGGS
T ss_pred CcccCCCHHHH-HHHHHHH--hcCCEEEEEEeCCCC
Confidence 9986 999864 3333321 123678888999874
No 194
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.51 E-value=4e-15 Score=186.87 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=108.5
Q ss_pred cEEEEEEEEEeCC---CCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEecCCCChHHhh
Q 001189 743 SIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAKFGLMDLR 818 (1128)
Q Consensus 743 ~i~~~~v~~~y~~---~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-~~G~I~i~g~~i~~~~~~~~r 818 (1128)
.|.+++...-.-. +...+++|++|+ ++|++++|+|||||||||++++|.|+..+ ..|. .+.. -+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~~ 644 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----QK 644 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----SE
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----hc
Confidence 4777664221100 224689999999 99999999999999999999999997532 2221 1110 12
Q ss_pred hceEEEcCCCccccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 819 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 819 ~~i~~v~Q~~~lf~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
..+++++| +|.. ++.+|+.. |+ .++|+++++ ++.+...+.
T Consensus 645 ~~i~~~~~---i~~~~~~~d~l~~---------------------------~~--------stf~~e~~~-~~~il~~a~ 685 (800)
T 1wb9_A 645 VEIGPIDR---IFTRVGAADDLAS---------------------------GR--------STFMVEMTE-TANILHNAT 685 (800)
T ss_dssp EEECCCCE---EEEEEC----------------------------------------------CHHHHHH-HHHHHHHCC
T ss_pred ccceeHHH---HHhhCCHHHHHHh---------------------------hh--------hhhhHHHHH-HHHHHHhcc
Confidence 34555554 3322 33333311 11 246777765 444445688
Q ss_pred CCCEEEEeccccCCCHHHHHHH-HHHHHHHc--CCcEEEEeecCchhhhhcCEEEEEeCCEEEEec
Q 001189 898 RSKILVLDEATAAVDVRTDALI-QKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 960 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i-~~~l~~~~--~~~Tvi~vtH~l~~~~~~D~i~vl~~G~i~~~g 960 (1128)
+|+++||||||+|+|+.....+ ++.++.+. .++|+|++||+.+...-||++..+.+|++....
T Consensus 686 ~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 686 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 9999999999999998555443 66666543 379999999999877678888778888876553
No 195
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=5.2e-15 Score=171.93 Aligned_cols=179 Identities=13% Similarity=0.123 Sum_probs=115.4
Q ss_pred EEEEEEEEEeCCCCCCceeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhce
Q 001189 744 IKFEDVVLRYRPELPPVLHGLSFTIPPSDK--VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 821 (1128)
Q Consensus 744 i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~--v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 821 (1128)
+++++ +++|+.. + |+++||+|++|++ +||+||||||||||+++|+|+. ++|.++....+...++.+
T Consensus 17 l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 17 VPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSN 84 (427)
T ss_dssp CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEE
T ss_pred EEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeE
Confidence 55666 7788542 5 9999999999999 9999999999999999999984 455555444444456789
Q ss_pred EEEcCCCcccc-ccHhhccccCCCCCHHHHHHH----HHHhcHHHHHHHc-------cCCcchh-------hhcCCCCCC
Q 001189 822 GIIPQSPVLFS-GTVRFNLDPFSEHSDADLWEA----LERAHLKDAIRRN-------SLGLDAQ-------VSEAGENFS 882 (1128)
Q Consensus 822 ~~v~Q~~~lf~-~Tv~~nl~~~~~~~~~~i~~~----l~~~~l~~~i~~l-------p~Gldt~-------v~e~g~~LS 882 (1128)
+|++|++.++. .|+.+|+.+.........+.. ++ ..+.+++... +...|+. +.+.+..|+
T Consensus 85 ~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 85 TYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 99999998874 599999977654443222221 11 1223333332 1222332 123344577
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHH-Hc-CCcEEEEeecC
Q 001189 883 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EF-KSCTMLIIAHR 938 (1128)
Q Consensus 883 gGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~-~~-~~~Tvi~vtH~ 938 (1128)
-.+ +.++++|..+++|+++||||..|.+.....+.+.|++ +. .|.+|+.++.+
T Consensus 164 ~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 164 SLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 665 7899999999999999999999999888888888876 43 46788888864
No 196
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.50 E-value=5.3e-17 Score=187.97 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=129.8
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC-CCCcee--------ecCcEEEEec-----CCCCCcccHH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-SDASAV--------IRGTVAYVPQ-----VSWIFNATVR 201 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~-~g~~~~--------~~~~i~~v~Q-----~~~l~~~Tv~ 201 (1128)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|.+.. .+..++|++| ++..|..+++
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHH
Confidence 3566655 7899999999999999999999999999886 554422 3456899999 7888999999
Q ss_pred HHHhcCCCC-------CHHHHHHHHHHhCcH-----------------HHHh------------cCCCCCcccccCCCCC
Q 001189 202 DNILFGSAF-------EPARYEKAIDVTSLQ-----------------HDLD------------LLPGGDVTEIGERGVN 245 (1128)
Q Consensus 202 eni~~g~~~-------~~~~~~~~~~~~~l~-----------------~~~~------------~l~~g~~t~vg~~g~~ 245 (1128)
+|+....+. +++.+..+++++... ..+. .++.++++.|++++..
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~ 283 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLP 283 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEE
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEe
Confidence 999876443 677676666655421 1111 2355678889999889
Q ss_pred CChHHHHHHHHHHHHccCCCE--EEEeCcCCCcCHHH---H-----HHHHHHHHccccCCcEEEEEccCccc
Q 001189 246 ISGGQKQRVSMARAVYSNSDV--FIFDDPLSALDAHV---G-----RQVFDRCIRGELSGKTRVLVTNQLHF 307 (1128)
Q Consensus 246 LSGGQkqRiaLARal~~~~~i--llLDEpts~LD~~~---~-----~~i~~~~~~~~~~~~tvilvtH~~~~ 307 (1128)
+||| ||+++||+++.+|++ +|+||+|++||... . +.+.+.++....+|+|.+.+.|++..
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 9999 899999999999999 99999999999651 1 23445556666679999999999864
No 197
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.49 E-value=2.1e-16 Score=182.38 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=108.4
Q ss_pred EEEEEEEE---eCCCCCCce---------eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001189 745 KFEDVVLR---YRPELPPVL---------HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 812 (1128)
Q Consensus 745 ~~~~v~~~---y~~~~~~~l---------~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~ 812 (1128)
+|++|+|+ |++..+++| +++||.|++|+.++|+||||||||||+++|+|+++|++|.|.++|. ..+
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 88899998 853222455 9999999999999999999999999999999999999999999985 345
Q ss_pred ChHHhhhceEEEc-CCCcc---ccccHhhccccCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001189 813 GLMDLRKILGIIP-QSPVL---FSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 887 (1128)
Q Consensus 813 ~~~~~r~~i~~v~-Q~~~l---f~~Tv~~nl~~~~~-~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrq 887 (1128)
.....|+.+++++ |++.+ +..|+++||..... ..|..+...++.+.+.+++..+|.|+++.+++.+.+-..+..+
T Consensus 215 ~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~ 294 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFE 294 (361)
T ss_dssp CCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHH
T ss_pred CccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHH
Confidence 5545778899999 88875 67799999863211 1222222222334566788888999999888877777788889
Q ss_pred HHHHHHH
Q 001189 888 LLSLSRA 894 (1128)
Q Consensus 888 rl~lAra 894 (1128)
|+.....
T Consensus 295 Rl~~l~~ 301 (361)
T 2gza_A 295 RLALMVL 301 (361)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9887653
No 198
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.48 E-value=4.9e-15 Score=161.63 Aligned_cols=72 Identities=13% Similarity=-0.012 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcCCCcC-----HHHHHHHHHHHHccccCCcEEEEEccCccch----------hcC-
Q 001189 248 GGQKQRVSMARAVYSNSDVFIFDDPLSALD-----AHVGRQVFDRCIRGELSGKTRVLVTNQLHFL----------SQV- 311 (1128)
Q Consensus 248 GGQkqRiaLARal~~~~~illLDEpts~LD-----~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l----------~~~- 311 (1128)
-++..+...+..-..+|++++|||||++|| +...+.+.+.+......|+|+|++||++... ..|
T Consensus 120 ~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~a 199 (251)
T 2ehv_A 120 VDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIA 199 (251)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGC
T ss_pred HHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEee
Confidence 445444444444457999999999999997 5555556553333334589999999998876 457
Q ss_pred CEEEEEeC
Q 001189 312 DRIILVHE 319 (1128)
Q Consensus 312 d~i~~l~~ 319 (1128)
|+|++|++
T Consensus 200 D~vi~l~~ 207 (251)
T 2ehv_A 200 RGVIVLDL 207 (251)
T ss_dssp SEEEEEEE
T ss_pred eEEEEEee
Confidence 99999963
No 199
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.48 E-value=5.2e-15 Score=185.85 Aligned_cols=165 Identities=12% Similarity=0.085 Sum_probs=106.4
Q ss_pred cEEEEeEEEEeCC----CCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC-CCCCcee-ecCcEEEEecC
Q 001189 119 AISIRNGYFSWDS----KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-VSDASAV-IRGTVAYVPQV 192 (1128)
Q Consensus 119 ~i~~~~~~f~~~~----~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-~~g~~~~-~~~~i~~v~Q~ 192 (1128)
.+.++++. .|- .+++.+++|++|+ ++|++++|+||||||||||+++++|...+ ..|.... .+..++++.|
T Consensus 577 ~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~- 652 (800)
T 1wb9_A 577 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR- 652 (800)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE-
T ss_pred CEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHH-
Confidence 47776642 221 0246799999999 99999999999999999999999996422 2221110 1123455444
Q ss_pred CCCC-cccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 001189 193 SWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 271 (1128)
Q Consensus 193 ~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDE 271 (1128)
+| ..++.||+..+ ..++|+|+++ ++.+...+.+|+++||||
T Consensus 653 --i~~~~~~~d~l~~~-----------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDE 694 (800)
T 1wb9_A 653 --IFTRVGAADDLASG-----------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDE 694 (800)
T ss_dssp --EEEEEC----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEES
T ss_pred --HHhhCCHHHHHHhh-----------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEEC
Confidence 22 23444443211 1246777764 444455689999999999
Q ss_pred cCCCcCHHHHHHHHHHHHcc-cc-CCcEEEEEccCccchhcCCEEEEEeCCeEeee
Q 001189 272 PLSALDAHVGRQVFDRCIRG-EL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 325 (1128)
Q Consensus 272 pts~LD~~~~~~i~~~~~~~-~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 325 (1128)
|++|+|+.....+...++.. .. .|.|+|++||+.+....+|++..+.+|++...
T Consensus 695 p~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 695 IGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp CCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred CCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 99998887666653333332 23 48999999999988777888777788877643
No 200
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.48 E-value=2.8e-15 Score=172.17 Aligned_cols=158 Identities=17% Similarity=0.123 Sum_probs=98.8
Q ss_pred Cceeee-eEEeeCCCEEEEEcCCCccHHHHHHHHhcCC--CCCCC---Cc-eee-------cCcEEEEecCCCCCcccHH
Q 001189 136 PTLLNI-NLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--PPVSD---AS-AVI-------RGTVAYVPQVSWIFNATVR 201 (1128)
Q Consensus 136 ~~L~~i-sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~--~~~~g---~~-~~~-------~~~i~~v~Q~~~l~~~Tv~ 201 (1128)
+.|+.+ ++.+++|++++|+||||||||||++.+++.. +|+.| +. ..+ +.++++++|.+.++..++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 467765 7899999999999999999999999999988 66653 22 211 1234445555444444555
Q ss_pred HHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc-------cCCCEEEEeCcCC
Q 001189 202 DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY-------SNSDVFIFDDPLS 274 (1128)
Q Consensus 202 eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~-------~~~~illLDEpts 274 (1128)
+||.+...++ |++|+|++.++++++ .+|+++++||||+
T Consensus 198 ~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 198 KHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp GGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 5544432211 467788888888887 6899999999999
Q ss_pred CcCHHH------------HHHHHHHHHccc-cCCcEEEEEccCccchhc-CCEEEEEeCCeEeeecCh
Q 001189 275 ALDAHV------------GRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 328 (1128)
Q Consensus 275 ~LD~~~------------~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 328 (1128)
++|+.. .+.++..+.+.. ..+.|+|+++|....... .+.+.....|++.+.+..
T Consensus 243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 243 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp THHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCS
T ss_pred hhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCc
Confidence 999862 233443333322 248999999998764432 234555666776655543
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=3.9e-15 Score=173.88 Aligned_cols=156 Identities=14% Similarity=0.134 Sum_probs=97.4
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC--Cc------eeecCcEEEEe
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD--AS------AVIRGTVAYVP 190 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g--~~------~~~~~~i~~v~ 190 (1128)
.|.++|++++|+. ++++++++|+| +|+|+||||||||++.|+|...+..| +. ......+++++
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 11 YVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp ----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred cEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 5889999999963 57999999998 99999999999999999998864332 11 11223589999
Q ss_pred cCCCCC-cccHHHHHhcCCCCCHH-HHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC---
Q 001189 191 QVSWIF-NATVRDNILFGSAFEPA-RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--- 265 (1128)
Q Consensus 191 Q~~~l~-~~Tv~eni~~g~~~~~~-~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~--- 265 (1128)
|++.++ ..||.||+.++...+.. .+..+. +.++ ..++++++||++|||+++.+|+
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~------~~i~--------------~~~~~~l~qr~~IaRal~~d~~~~v 141 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDNSNCWQPVI------DYID--------------SKFEDYLNAESRVNRRQMPDNRVQC 141 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHH------HHHH--------------HHHHHHTTTSCC-CCCCCCCC-CCE
T ss_pred ecCCcccceeeeechhhhhhccchhhHHHHH------HHHH--------------HHHHHHHHHHHHHHHHhccCCCeeE
Confidence 988775 78999999887543211 111111 1121 1356677889999999999999
Q ss_pred EEEEeCcC-CCcCHHHHHHHHHHHHccccCCcEEEEEccCccch
Q 001189 266 VFIFDDPL-SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 308 (1128)
Q Consensus 266 illLDEpt-s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l 308 (1128)
++++|||| ++||+....++ +.+ . .+.++|+|.|..+.+
T Consensus 142 lL~ldePt~~~L~~~d~~~l-k~L-~---~~v~iIlVinK~Dll 180 (418)
T 2qag_C 142 CLYFIAPSGHGLKPLDIEFM-KRL-H---EKVNIIPLIAKADTL 180 (418)
T ss_dssp EEEECCC-CCSCCHHHHHHH-HHH-T---TTSEEEEEEESTTSS
T ss_pred EEEEecCcccCCCHHHHHHH-HHH-h---ccCcEEEEEEcccCc
Confidence 99999999 69999864433 333 2 367889998876543
No 202
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.46 E-value=6.7e-16 Score=163.88 Aligned_cols=162 Identities=12% Similarity=0.127 Sum_probs=90.2
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCC-----CCCCCCceee-----cCcEEE
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----PPVSDASAVI-----RGTVAY 188 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~-----~~~~g~~~~~-----~~~i~~ 188 (1128)
.++++|++|.|+ .+++++ |.+++|.+++|+|+||||||||++.|+|.. .|+.|..... .+.+-+
T Consensus 3 ~l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l 76 (210)
T 1pui_A 3 NLNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 76 (210)
T ss_dssp --------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred chhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence 378899999995 257888 899999999999999999999999999987 6666543321 111111
Q ss_pred EecCCCCC------------cccHHHHH---------hc----CCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCC
Q 001189 189 VPQVSWIF------------NATVRDNI---------LF----GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 243 (1128)
Q Consensus 189 v~Q~~~l~------------~~Tv~eni---------~~----g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g 243 (1128)
+ ..|-.. ...+..-+ .+ ....... ..+..++. . ...+| .-.++.+.
T Consensus 77 ~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~---~-~~~~~---~~~v~nK~ 147 (210)
T 1pui_A 77 V-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWA---V-DSNIA---VLVLLTKA 147 (210)
T ss_dssp E-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHH---H-HTTCC---EEEEEECG
T ss_pred E-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchh-HHHHHHHH---H-HcCCC---eEEEEecc
Confidence 1 111110 00011100 00 0011111 11111111 0 01112 11245666
Q ss_pred CCCChHHHHH-HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCC
Q 001189 244 VNISGGQKQR-VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 295 (1128)
Q Consensus 244 ~~LSGGQkqR-iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~ 295 (1128)
..+|+||||| +..+|+++.+|+++++|||||++|+...+.+++.+.....++
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 6899999999 899999999999999999999999999999998765543333
No 203
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.46 E-value=8.2e-14 Score=143.22 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=66.8
Q ss_pred CCCCChHHHHHHHHHHHHc----cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEE-
Q 001189 243 GVNISGGQKQRVSMARAVY----SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV- 317 (1128)
Q Consensus 243 g~~LSGGQkqRiaLARal~----~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l- 317 (1128)
...||||||||++|||+|+ ++|+++||||||++||+...+.+.+.+ +...++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l-~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLI-KESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH-HHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHH-HHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 4679999999999999995 567999999999999999999998854 4344567999999999888899999865
Q ss_pred -eCCe
Q 001189 318 -HEGM 321 (1128)
Q Consensus 318 -~~G~ 321 (1128)
++|.
T Consensus 141 ~~~g~ 145 (173)
T 3kta_B 141 MRDGV 145 (173)
T ss_dssp EETTE
T ss_pred ecCCE
Confidence 4664
No 204
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.45 E-value=3.6e-14 Score=152.77 Aligned_cols=169 Identities=17% Similarity=0.124 Sum_probs=105.7
Q ss_pred CCceeeeeE-EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHh-cCCCCCH
Q 001189 135 RPTLLNINL-DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEP 212 (1128)
Q Consensus 135 ~~~L~~isl-~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~ 212 (1128)
-+.|+++.. .+++|++++|+||||||||||++.|++...+..+ .+.|+..+.. ...+.+.+. ++....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-------~v~~~~~~~~--~~~~~~~~~~~~~~~~- 78 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD-------PCIYVTTEES--RDSIIRQAKQFNWDFE- 78 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC-------CEEEEESSSC--HHHHHHHHHHTTCCCG-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC-------eEEEEEcccC--HHHHHHHHHHhcchHH-
Confidence 457888888 8999999999999999999999999987765432 3556554421 111122111 121110
Q ss_pred HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCcCCCc--CHHHHHHHHHHH
Q 001189 213 ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSAL--DAHVGRQVFDRC 288 (1128)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~--illLDEpts~L--D~~~~~~i~~~~ 288 (1128)
.+.. ..+ ..++........... ....|.+|.++...+.+...+|+ ++++||||+.+ |+...+.+++.+
T Consensus 79 -~~~~----~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l 150 (235)
T 2w0m_A 79 -EYIE----KKL-IIIDALMKEKEDQWS--LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYL 150 (235)
T ss_dssp -GGBT----TTE-EEEECCC----CTTB--CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHH
T ss_pred -HHhh----CCE-EEEeccccccCceee--ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHH
Confidence 0000 000 000000000000000 12349999998888888778999 99999999888 998778887765
Q ss_pred Hccc-cCCcEEEEEccCc--------cchh-cCCEEEEEeCCe
Q 001189 289 IRGE-LSGKTRVLVTNQL--------HFLS-QVDRIILVHEGM 321 (1128)
Q Consensus 289 ~~~~-~~~~tvilvtH~~--------~~l~-~~d~i~~l~~G~ 321 (1128)
.... ..|.|+|++||+. ..+. .||+|++|++..
T Consensus 151 ~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 151 KRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 5432 3589999999998 3454 489999998643
No 205
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.43 E-value=9.6e-15 Score=165.79 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=108.0
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCC--------CCCCceEEECCEecCCCC---------------hHHhhhceEEE---c
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIV--------ELERGRILIDGFDIAKFG---------------LMDLRKILGII---P 825 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~--------~p~~G~I~i~g~~i~~~~---------------~~~~r~~i~~v---~ 825 (1128)
++++|+|+||||||||++.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999987753 34677788888 7
Q ss_pred CCCcc-ccccHhhccccCCCCCHHHHHHHH-------HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001189 826 QSPVL-FSGTVRFNLDPFSEHSDADLWEAL-------ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 897 (1128)
Q Consensus 826 Q~~~l-f~~Tv~~nl~~~~~~~~~~i~~~l-------~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~ 897 (1128)
|++.+ |+.++.||..... ...+.+.+ ....+...+... ++....... .++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~---p~~~~~~~~~~~~~~~~~~l~~~l~~v--d~~~~~~~~-~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMAD---PGPIIQTFFSHEVLCQRYLLDGVIALV--DAVHADEQM-NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCC---HHHHHHHHHHSHHHHHHEEEEEEEEEE--ETTTHHHHH-HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCC---HHHHHHHHhcCccccCeEEECCEEEEE--EHHHHHHHH-hhchHHHHHHHhCCEEEEE
Confidence 88764 5679999987542 22222221 000000000000 000000000 1589999999999999999
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 941 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~ 941 (1128)
+|+++ ||| +.+.+.|++..++.||+++||+.-.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~ 191 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDID 191 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCC
Confidence 99987 998 6788888887778999999997443
No 206
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.43 E-value=1.1e-13 Score=154.05 Aligned_cols=151 Identities=12% Similarity=0.106 Sum_probs=95.1
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccc-cCCCC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEH 845 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~-~~~~~ 845 (1128)
.+++|++++|+||||||||||++.+++.+. .|.+ +.|.+... +..+.|++.+... ..+..++. .....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 378999999999999999999999998664 5666 33543311 2356676655432 11211111 00111
Q ss_pred CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecccc--CCCHHHH---HHHH
Q 001189 846 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA--AVDVRTD---ALIQ 920 (1128)
Q Consensus 846 ~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs--~lD~~t~---~~i~ 920 (1128)
......+.++... +....+.....||+||+|++ ++++++|+++||||||+ ++|.... ..+.
T Consensus 95 ~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 95 SAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp CHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred ChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 2222222222222 22223445567999998765 68889999999999999 9997544 6667
Q ss_pred HHHHHHc--CCcEEEEeecCchhh
Q 001189 921 KTIREEF--KSCTMLIIAHRLNTI 942 (1128)
Q Consensus 921 ~~l~~~~--~~~Tvi~vtH~l~~~ 942 (1128)
+.|+++. .++|||+|+|.....
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHcCCEEEEEecCCCcc
Confidence 7777653 389999999987654
No 207
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.43 E-value=9.3e-16 Score=171.33 Aligned_cols=128 Identities=12% Similarity=0.122 Sum_probs=91.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCH----HHHHHHHHHh
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEP----ARYEKAIDVT 222 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~----~~~~~~~~~~ 222 (1128)
++.+++|+|++|||||||++.|.+.+.+. |.. +..+.+|+|++++++.++++|+.++.+... .....+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~~---~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~ 105 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YGG---EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMK 105 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HGG---GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CCC---CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHH
Confidence 46799999999999999999999998753 211 334667799999999999999976521000 0000112223
Q ss_pred CcHHHHhcCCCCCcc------cccCCCCCCChHHHHHHHHH--HHHccCCCEEEEeCcCCCcCHHH
Q 001189 223 SLQHDLDLLPGGDVT------EIGERGVNISGGQKQRVSMA--RAVYSNSDVFIFDDPLSALDAHV 280 (1128)
Q Consensus 223 ~l~~~~~~l~~g~~t------~vg~~g~~LSGGQkqRiaLA--Ral~~~~~illLDEpts~LD~~~ 280 (1128)
.+.+.+..++.|++| .+...+.++||||+||+++| |++ +|+|+|+|||++++|+..
T Consensus 106 ~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 106 LLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 345567777777544 34556789999999999998 666 999999999999999863
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=2.3e-14 Score=166.54 Aligned_cols=177 Identities=16% Similarity=0.176 Sum_probs=111.5
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCE--EEEEcCCCccHHHHHHHHhcCCC---CCCC-CceeecCcEEEEecC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSL--VAIVGGTGEGKTSLISAMLGELP---PVSD-ASAVIRGTVAYVPQV 192 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~--~~ivG~~GsGKSTLl~~l~G~~~---~~~g-~~~~~~~~i~~v~Q~ 192 (1128)
.+++++ ++.|+. .+ |+++||++++|++ ++|+|+||||||||+++|+|..- +... .....+..++|++|+
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec
Confidence 355566 777852 45 9999999999999 99999999999999999999841 1100 011123469999999
Q ss_pred CCCC-cccHHHHHhcCCCCCHH-HHHHHHHHh--CcHHHHhc-------CCCCCcc-------cccCCCCCCChHHHHHH
Q 001189 193 SWIF-NATVRDNILFGSAFEPA-RYEKAIDVT--SLQHDLDL-------LPGGDVT-------EIGERGVNISGGQKQRV 254 (1128)
Q Consensus 193 ~~l~-~~Tv~eni~~g~~~~~~-~~~~~~~~~--~l~~~~~~-------l~~g~~t-------~vg~~g~~LSGGQkqRi 254 (1128)
+.++ ..||.||+.+|...+.. .+..+.+.. .....+.. ++...++ .|-+.+..|+-.. +
T Consensus 91 ~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---i 167 (427)
T 2qag_B 91 SNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---L 167 (427)
T ss_dssp --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---H
T ss_pred CccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---H
Confidence 8876 67999999998765432 111111000 01111111 1111111 1234455677776 7
Q ss_pred HHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHc-cccCCcEEEEEcc
Q 001189 255 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTN 303 (1128)
Q Consensus 255 aLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~-~~~~~~tvilvtH 303 (1128)
.++++|..+++|+++|+|+..|.+.....+++.+.. ....|..++.++.
T Consensus 168 eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 168 VTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 999999999999999999999999887777776554 3345778887774
No 209
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.42 E-value=1.2e-13 Score=147.41 Aligned_cols=149 Identities=18% Similarity=0.133 Sum_probs=96.0
Q ss_pred CceeeeeE-EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhh
Q 001189 759 PVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 837 (1128)
Q Consensus 759 ~~l~~vsl-~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~ 837 (1128)
+.|+++.. .+++|++++|+||||||||||++.|++ .+..+.++++..+ ..+...++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~------------------- 63 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLV------------------- 63 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHH-------------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHH-------------------
Confidence 46777765 689999999999999999999999999 4333444444321 11111111
Q ss_pred ccccCCCCCHHHHHHHHHHhcH--HHHHHHccCCcchhhhcCCCCCChh--HHHHHHHHHHhccC-CCEEEEeccccCCC
Q 001189 838 NLDPFSEHSDADLWEALERAHL--KDAIRRNSLGLDAQVSEAGENFSVG--QRQLLSLSRALLRR-SKILVLDEATAAVD 912 (1128)
Q Consensus 838 nl~~~~~~~~~~i~~~l~~~~l--~~~i~~lp~Gldt~v~e~g~~LSgG--qrqrl~lArall~~-p~iLlLDEpTs~lD 912 (1128)
+.++..++ .++.+.+. + ..+|++ ++|+++.+|+++++ |+++|+||||+.+|
T Consensus 64 --------------~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 64 --------------QMAETRGLNPEEALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp --------------HHHHTTTCCHHHHHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred --------------HHHHhcCCChHHHhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 11111110 11111111 1 124444 36789999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHHcC--CcEEEEeecCch-------------hhhh-cCEEEEEeCC
Q 001189 913 VRTD--------ALIQKTIREEFK--SCTMLIIAHRLN-------------TIID-CDRILLLDSG 954 (1128)
Q Consensus 913 ~~t~--------~~i~~~l~~~~~--~~Tvi~vtH~l~-------------~~~~-~D~i~vl~~G 954 (1128)
+... ..+.+.|+++.+ ++|||+++|... .+.. ||+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 7432 234444555433 789999999876 3444 9999999754
No 210
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.42 E-value=5.5e-16 Score=159.43 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=76.6
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCC---CCCce---------------eec-CcEE----EEecCCCCCcccHHHHHh
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELPPV---SDASA---------------VIR-GTVA----YVPQVSWIFNATVRDNIL 205 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~~~---~g~~~---------------~~~-~~i~----~v~Q~~~l~~~Tv~eni~ 205 (1128)
++++|+|+||||||||+++|+|+++|. .|.+. .++ ..++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999886 33211 112 2355 788888776 111
Q ss_pred cCCCCCHHHHHHHHHHhCcHHHHhc-CCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 001189 206 FGSAFEPARYEKAIDVTSLQHDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 267 (1128)
Q Consensus 206 ~g~~~~~~~~~~~~~~~~l~~~~~~-l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~il 267 (1128)
.+++. .+++.+.+.. +| |++|.++|+ |||||||||+||||++++|+++
T Consensus 77 ----~~~~~------~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VSEEE------GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CCHHH------HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CChhh------hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 11211 6788889988 99 999999995 9999999999999999998874
No 211
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.41 E-value=3.9e-15 Score=155.77 Aligned_cols=138 Identities=14% Similarity=0.056 Sum_probs=88.5
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHS 846 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~ 846 (1128)
.+++|++++|+|||||||||++++|.|. |..|.|.++|.++..... .++.++|++|++. ...|+.+|+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~---- 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADV---- 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHH----
Confidence 4789999999999999999999999998 788999999876532211 1334678888754 334677776421
Q ss_pred HHHHHHHHHHhcHHHHHHHc--cCCcchhh--hcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHH
Q 001189 847 DADLWEALERAHLKDAIRRN--SLGLDAQV--SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 922 (1128)
Q Consensus 847 ~~~i~~~l~~~~l~~~i~~l--p~Gldt~v--~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~ 922 (1128)
.. .... .+....++.. ..+++... +.....+|+|++|+++++|++.++|+++ +|++..+.+++.
T Consensus 76 -~~--~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 76 -AG--RYAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp -HH--HHHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred -HH--HHhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 00 0000 0000000000 01111111 2223469999999999999999999877 588777777776
Q ss_pred HHH
Q 001189 923 IRE 925 (1128)
Q Consensus 923 l~~ 925 (1128)
++.
T Consensus 144 ~~~ 146 (191)
T 1zp6_A 144 FAD 146 (191)
T ss_dssp TTC
T ss_pred Hhc
Confidence 654
No 212
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.41 E-value=3.9e-15 Score=183.05 Aligned_cols=177 Identities=20% Similarity=0.266 Sum_probs=105.7
Q ss_pred cEEEEeEEEEeCCCCCCCceeee----------eEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC-CCCCce-------
Q 001189 119 AISIRNGYFSWDSKAERPTLLNI----------NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-VSDASA------- 180 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~i----------sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~-~~g~~~------- 180 (1128)
.+.++|+++.|+.+ .+++|+.+ +|+++. ++|+|+||||||||+++|+|++.| ++|.+.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999632 24555544 377775 999999999999999999999878 566431
Q ss_pred --------eecCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHH
Q 001189 181 --------VIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 251 (1128)
Q Consensus 181 --------~~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQk 251 (1128)
.++..++|++|++.++ ..||++||.+.. .. +.... ..+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~--------~~---------~~~~~-----------~~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ--------NA---------IAGEG-----------MGIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH--------HH---------HHCSS-----------SCCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH--------HH---------hcCCc-----------cccc---h
Confidence 1345699999999886 579999986420 00 00000 0111 1
Q ss_pred HHHHHHHHHccCCCEEEEeCc------CCCcCHHHHHHHHHHHHccc--cCCcEEEEEccCccch--------hc-----
Q 001189 252 QRVSMARAVYSNSDVFIFDDP------LSALDAHVGRQVFDRCIRGE--LSGKTRVLVTNQLHFL--------SQ----- 310 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEp------ts~LD~~~~~~i~~~~~~~~--~~~~tvilvtH~~~~l--------~~----- 310 (1128)
+++.++.+....|+++++||| |++||+...+.+.+.+.... ..+.+++++||+.+.. +.
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g 214 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEG 214 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSC
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcC
Confidence 233444444568999999999 99999999888877554422 2367889999998743 11
Q ss_pred CCEEEEEeCCeEeeecChhH
Q 001189 311 VDRIILVHEGMVKEEGTFED 330 (1128)
Q Consensus 311 ~d~i~~l~~G~i~~~g~~~~ 330 (1128)
...|+++.++.++..|+.++
T Consensus 215 ~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 215 DRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp CSEEEEEECGGGSSSSSTTC
T ss_pred CceEEEecchhhcCcccHHH
Confidence 25688888887777776543
No 213
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.40 E-value=2.8e-13 Score=146.94 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=86.9
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhc--CCCC-----CCceEEECCEecCC-CChHHhhhceEEEcCCCccccccHhhc
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFR--IVEL-----ERGRILIDGFDIAK-FGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g--~~~p-----~~G~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
.|++|++++|+||||||||||++.|++ ..+| ..|.+++++.+... .....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 478999999999999999999999999 5555 57889998765211 0112233445554443 3344
Q ss_pred cccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEeccccCCCHH--
Q 001189 839 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDVR-- 914 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall--~~p~iLlLDEpTs~lD~~-- 914 (1128)
+......+.++..+. +.-++.++ .+|+++++||||+.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 93 VAYARAFNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp EEEEECCSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred eEEEecCCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 433222222222111 11122222 589999999999999985
Q ss_pred -----HH-----HHHHHHHHHHc--CCcEEEEeecCchhh-------------------h-hcCEEEEEeCC
Q 001189 915 -----TD-----ALIQKTIREEF--KSCTMLIIAHRLNTI-------------------I-DCDRILLLDSG 954 (1128)
Q Consensus 915 -----t~-----~~i~~~l~~~~--~~~Tvi~vtH~l~~~-------------------~-~~D~i~vl~~G 954 (1128)
++ ..+...|.+.. .++|||+++|..... . .||++++|+.|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 23333344332 389999999965432 2 38999999865
No 214
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.40 E-value=4e-13 Score=149.64 Aligned_cols=147 Identities=15% Similarity=0.192 Sum_probs=93.9
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCc-----eeecCcEEEEecCCCCCcccHHHHHh-cCCCCCHHHHHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS-----AVIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEPARYEK 217 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~-----~~~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~~~~~~ 217 (1128)
.+++|++++|+|+||||||||++.+++.... |.. ....+.+.|++.+... ..+...+. ++...+......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~ 101 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG--GPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQA 101 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT--CCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhh
Confidence 4789999999999999999999999986532 211 1113468888776432 22322221 233333333333
Q ss_pred HHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCC--CcCHHHH---HHHHHHHHccc
Q 001189 218 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS--ALDAHVG---RQVFDRCIRGE 292 (1128)
Q Consensus 218 ~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts--~LD~~~~---~~i~~~~~~~~ 292 (1128)
+++...+.+ ..+.....||+||+|++ |+++.+|+++++||||+ ++|.... ..+++.+....
T Consensus 102 ~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~ 167 (279)
T 1nlf_A 102 VADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIA 167 (279)
T ss_dssp HHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHH
T ss_pred ccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHH
Confidence 333332211 12344568999998865 68888999999999999 9997433 56665544432
Q ss_pred -cCCcEEEEEccCccch
Q 001189 293 -LSGKTRVLVTNQLHFL 308 (1128)
Q Consensus 293 -~~~~tvilvtH~~~~l 308 (1128)
..|.|+|+++|.....
T Consensus 168 ~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 168 ADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHCCEEEEEEEC----
T ss_pred HHcCCEEEEEecCCCcc
Confidence 3489999999987654
No 215
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.40 E-value=2.5e-15 Score=167.84 Aligned_cols=128 Identities=11% Similarity=0.029 Sum_probs=90.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCC----C
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE----H 845 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~----~ 845 (1128)
++.+|||+|++|||||||.+.|.+++.+. | . -++.+.+|+||+++|+.++++|+..... .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g-------------~--~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y-------------G--GEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H-------------G--GGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C-------------C--CCceEEEeccccccCChHHHHHHhccccccchh
Confidence 57799999999999999999999999864 2 0 1445667799999999999998742100 0
Q ss_pred CHHHHHHHHHHhcHHHHHHHccCCcchh------hhcCCCCCChhHHHHHHHH--HHhccCCCEEEEeccccCCCHHH
Q 001189 846 SDADLWEALERAHLKDAIRRNSLGLDAQ------VSEAGENFSVGQRQLLSLS--RALLRRSKILVLDEATAAVDVRT 915 (1128)
Q Consensus 846 ~~~~i~~~l~~~~l~~~i~~lp~Gldt~------v~e~g~~LSgGqrqrl~lA--rall~~p~iLlLDEpTs~lD~~t 915 (1128)
.....-++.+...+.+++..++.|++|. +...+.++||||+||+++| +++ +|+|||+||||+++|+.+
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000001122345667888889998764 3445678999999999998 555 899999999999999864
No 216
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.38 E-value=3.2e-15 Score=173.19 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=56.2
Q ss_pred ceeeeeEEeeC--CCEEEEEcCCCccHHHHHHHHhcCCCCCC----CCceee------------c--CcEEEEecCCCCC
Q 001189 137 TLLNINLDIPV--GSLVAIVGGTGEGKTSLISAMLGELPPVS----DASAVI------------R--GTVAYVPQVSWIF 196 (1128)
Q Consensus 137 ~L~~isl~i~~--G~~~~ivG~~GsGKSTLl~~l~G~~~~~~----g~~~~~------------~--~~i~~v~Q~~~l~ 196 (1128)
..+.|++++++ |++++|+|+||||||||+++|+|+++|+. |....- . ..|++++|++.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999987 543210 0 1267777777667
Q ss_pred cccHHHHHhcCC
Q 001189 197 NATVRDNILFGS 208 (1128)
Q Consensus 197 ~~Tv~eni~~g~ 208 (1128)
..|++|||.++.
T Consensus 237 ~~t~~~nl~~~~ 248 (365)
T 1lw7_A 237 AVRHSHKIAFID 248 (365)
T ss_dssp HHHHCSSEEEES
T ss_pred HHhccCCEEEEe
Confidence 778888877653
No 217
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.35 E-value=1.9e-13 Score=153.62 Aligned_cols=138 Identities=17% Similarity=0.119 Sum_probs=89.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee------------------cCcEEEEecCCCCC-cccHHHHHhcC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSWIF-NATVRDNILFG 207 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~l~-~~Tv~eni~~g 207 (1128)
+|++++|+||||||||||++.|+|.++|++|.+... +..|+|++|++.++ ..|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999986643221 22489999998776 46889988642
Q ss_pred CCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCcCCCcCHHHHHHHH
Q 001189 208 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSALDAHVGRQVF 285 (1128)
Q Consensus 208 ~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~--illLDEpts~LD~~~~~~i~ 285 (1128)
. .+ +.+..+-..++..+. ....++..++||++||||+..+|+ ++.|| |+++.+. .
T Consensus 181 ~----------~~--~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~------~ 237 (304)
T 1rj9_A 181 K----------AR--GYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNG------L 237 (304)
T ss_dssp H----------HH--TCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH------H
T ss_pred H----------hC--CCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH------H
Confidence 1 00 111001011111111 112356677999999999999999 55555 5555443 3
Q ss_pred HHHHccc-cCCcEEEEEccCccc
Q 001189 286 DRCIRGE-LSGKTRVLVTNQLHF 307 (1128)
Q Consensus 286 ~~~~~~~-~~~~tvilvtH~~~~ 307 (1128)
+.+.... ..+.|+|++||+...
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHcCCcEEEEECCccc
Confidence 3222211 236899999998543
No 218
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.35 E-value=4.4e-15 Score=158.07 Aligned_cols=139 Identities=11% Similarity=0.149 Sum_probs=93.5
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCH
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD 847 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~ 847 (1128)
.++|+++||+||||||||||+++|.|++.|+ | ..+++|+++...+..+..+|+..+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~-- 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRK-- 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGT--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccC--
Confidence 4789999999999999999999999999875 4 246677777766666655554311100
Q ss_pred HHHHHHHHHhcHHHHHHHccCC--cchhhhcCCCCCChhHHHHHHHH-HHhccCCCEEEEeccccCCCHHHHHHHHHHHH
Q 001189 848 ADLWEALERAHLKDAIRRNSLG--LDAQVSEAGENFSVGQRQLLSLS-RALLRRSKILVLDEATAAVDVRTDALIQKTIR 924 (1128)
Q Consensus 848 ~~i~~~l~~~~l~~~i~~lp~G--ldt~v~e~g~~LSgGqrqrl~lA-rall~~p~iLlLDEpTs~lD~~t~~~i~~~l~ 924 (1128)
.+..+.+...+.+++..++.| +++.+.+.+..+|+||+|++++| ++++.++.++++|||.. ..+.
T Consensus 78 -~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~ 145 (208)
T 3c8u_A 78 -GAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLT 145 (208)
T ss_dssp -TSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGG
T ss_pred -CCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHH
Confidence 000001111223334444333 67778888889999999999998 89999999888999852 1122
Q ss_pred HHcCCcEEEEeecCchh
Q 001189 925 EEFKSCTMLIIAHRLNT 941 (1128)
Q Consensus 925 ~~~~~~Tvi~vtH~l~~ 941 (1128)
+.+ ..++++.+..+.
T Consensus 146 ~~~--d~~i~vd~~~~~ 160 (208)
T 3c8u_A 146 AIW--DVSIRLEVPMAD 160 (208)
T ss_dssp GTC--SEEEEECCCHHH
T ss_pred Hhc--CEEEEEeCCHHH
Confidence 221 367778887776
No 219
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.34 E-value=3.1e-15 Score=156.48 Aligned_cols=170 Identities=16% Similarity=0.064 Sum_probs=105.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccc-cccHhhccccCCCCCHHH
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNLDPFSEHSDAD 849 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~~nl~~~~~~~~~~ 849 (1128)
|++++|+|||||||||++++|.+ |.+|.+.++|.++... ..+++++|.+..+ ..++++|+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68999999999999999999987 6789999998655321 2356777765333 23566555321
Q ss_pred HHHHHHHhcHHHHHHHccCCcchhhhcCCCCC--ChhHHHHHHHHH------HhccCCCEEEEeccccCCCHHHHHHHHH
Q 001189 850 LWEALERAHLKDAIRRNSLGLDAQVSEAGENF--SVGQRQLLSLSR------ALLRRSKILVLDEATAAVDVRTDALIQK 921 (1128)
Q Consensus 850 i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~L--SgGqrqrl~lAr------all~~p~iLlLDEpTs~lD~~t~~~i~~ 921 (1128)
....+.. +....++. ..+ .... +.-..+ |+|++|++.++. +++++|+...+|+ ++|+...+. ++
T Consensus 66 ~~~~~~~-~~~~ild~-~~~-~~~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~ 137 (189)
T 2bdt_A 66 TVNFLLA-QNDVVLDY-IAF-PDEA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE 137 (189)
T ss_dssp HHHHHHT-TCEEEEES-CCC-HHHH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH
T ss_pred HHHHHhc-CCcEEEee-ccC-HHHH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH
Confidence 0000000 00000000 000 0000 000124 788888888887 8888888888884 899988877 77
Q ss_pred HHHHHc-CCcEEEEeecC-chhhhh-cCEEEEEeCCEEEEecChhHHh
Q 001189 922 TIREEF-KSCTMLIIAHR-LNTIID-CDRILLLDSGRVLEYDTPEELL 966 (1128)
Q Consensus 922 ~l~~~~-~~~Tvi~vtH~-l~~~~~-~D~i~vl~~G~i~~~g~~~~l~ 966 (1128)
.++... .+.++|.+||. +++++. ||+|+ ++|+++..|+++-|-
T Consensus 138 ~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 138 EFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 777754 35799999999 999988 99998 999999999987653
No 220
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.34 E-value=6.5e-13 Score=160.80 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=68.8
Q ss_pred CCC-ChHHHHHHHHHHHHccCC--CEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCC
Q 001189 244 VNI-SGGQKQRVSMARAVYSNS--DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 320 (1128)
Q Consensus 244 ~~L-SGGQkqRiaLARal~~~~--~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 320 (1128)
..| ||||||||+|||||+.+| ++|||||||++||+.+...+.+.+.... +|+|||+|||+++.+..||++++|+++
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~-~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHH-HHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 456 999999999999999999 9999999999999999999988665443 389999999999998889999999665
Q ss_pred e
Q 001189 321 M 321 (1128)
Q Consensus 321 ~ 321 (1128)
.
T Consensus 474 ~ 474 (517)
T 4ad8_A 474 V 474 (517)
T ss_dssp E
T ss_pred c
Confidence 3
No 221
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.34 E-value=2.3e-15 Score=171.99 Aligned_cols=176 Identities=12% Similarity=0.120 Sum_probs=115.1
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHhhhc
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKI 820 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~~ 820 (1128)
++++++++|.. ..+|++++|++++|++++|+||||||||||+++|.|++.|++|+|.+.|.|+..... ...|++
T Consensus 31 e~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 31 ESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp TCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred eeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 34456666643 258999999999999999999999999999999999999999999999998864321 235778
Q ss_pred eEEEcCCCccccc----------c---Hhhcc--------c------cCCCCCHHHHHHHHHH-------------hcHH
Q 001189 821 LGIIPQSPVLFSG----------T---VRFNL--------D------PFSEHSDADLWEALER-------------AHLK 860 (1128)
Q Consensus 821 i~~v~Q~~~lf~~----------T---v~~nl--------~------~~~~~~~~~i~~~l~~-------------~~l~ 860 (1128)
+++++|++.+|.. | +++.+ + ++-..++..+.+.++. ..+.
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 9999999988741 1 11111 0 0000011111100000 0000
Q ss_pred HHHHHccCCcc-hhhhc-CCCCCChhHHHHHHHHHHhcc------CCCEEEEeccccCCCHHHHHHHHHHHHHH
Q 001189 861 DAIRRNSLGLD-AQVSE-AGENFSVGQRQLLSLSRALLR------RSKILVLDEATAAVDVRTDALIQKTIREE 926 (1128)
Q Consensus 861 ~~i~~lp~Gld-t~v~e-~g~~LSgGqrqrl~lArall~------~p~iLlLDEpTs~lD~~t~~~i~~~l~~~ 926 (1128)
..+...|.-+- ..++. ....+|+|++|++..|++++. +|+++. ||++|......+++.|.+.
T Consensus 189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 00111111000 01110 112478999999999999998 688876 9999999999999999874
No 222
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.31 E-value=1.2e-12 Score=153.79 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=100.7
Q ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHH--hhhceEEEcCCCcccc-cc
Q 001189 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMD--LRKILGIIPQSPVLFS-GT 834 (1128)
Q Consensus 762 ~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~----~~~--~r~~i~~v~Q~~~lf~-~T 834 (1128)
+++||++++|++++|+|+||||||||+++|+|++.|++|+|.++|.|+.... +.. .|+.|+|++|++.++. .|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788999999999999999999999999999999999999999988875531 112 3678999999987654 47
Q ss_pred HhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCC-----CCChhHHHHHHHHHHhcc-CC-CEEEEec
Q 001189 835 VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGE-----NFSVGQRQLLSLSRALLR-RS-KILVLDE 906 (1128)
Q Consensus 835 v~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v-~e~g~-----~LSgGqrqrl~lArall~-~p-~iLlLDE 906 (1128)
+++|+.... . .|+|..+ ...|. ++-.--+|++.++|++.. .| .+||..+
T Consensus 364 V~e~l~~a~-----------~------------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 364 IFDAIQAAK-----------A------------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHH-----------H------------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHH-----------h------------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 888775310 0 1111111 11111 011122478888887754 45 3555555
Q ss_pred cccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchh
Q 001189 907 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 941 (1128)
Q Consensus 907 pTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~ 941 (1128)
||++.|.... .+.+.+ .-+.|.+++|| ++.
T Consensus 421 attGq~al~~---ak~f~~-~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 421 ASTGQNAVSQ---AKLFHE-AVGLTGITLTK-LDG 450 (503)
T ss_dssp GGGTHHHHHH---HHHHHH-HTCCSEEEEEC-GGG
T ss_pred CcccHHHHHH---HHHHHh-hcCCCEEEEEc-CCC
Confidence 8888655421 122222 13678999999 443
No 223
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.30 E-value=8.8e-12 Score=132.95 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=96.8
Q ss_pred CceeeeeE-EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHH
Q 001189 136 PTLLNINL-DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR 214 (1128)
Q Consensus 136 ~~L~~isl-~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~ 214 (1128)
+.|+.+.. .+++|++++|+|+||||||||++.+++ .+ | +.+.|+..+..+....+.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~--~------~~v~~i~~~~~~~~~~~~~------------ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS--G------KKVAYVDTEGGFSPERLVQ------------ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH--C------SEEEEEESSCCCCHHHHHH------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc--C------CcEEEEECCCCCCHHHHHH------------
Confidence 45677665 799999999999999999999999999 21 2 2466776654322222222
Q ss_pred HHHHHHHhCcH--HHHhcCCCCCcccccCCCCCCChH--HHHHHHHHHHHccC-CCEEEEeCcCCCcCHHHH--------
Q 001189 215 YEKAIDVTSLQ--HDLDLLPGGDVTEIGERGVNISGG--QKQRVSMARAVYSN-SDVFIFDDPLSALDAHVG-------- 281 (1128)
Q Consensus 215 ~~~~~~~~~l~--~~~~~l~~g~~t~vg~~g~~LSGG--QkqRiaLARal~~~-~~illLDEpts~LD~~~~-------- 281 (1128)
..+..++. +..+.+ .+ ..+|++ |+|+++.+|+++.+ |+++++|||++.+|+...
T Consensus 65 ---~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~ 131 (220)
T 2cvh_A 65 ---MAETRGLNPEEALSRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAEL 131 (220)
T ss_dssp ---HHHTTTCCHHHHHHHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHH
T ss_pred ---HHHhcCCChHHHhhcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHH
Confidence 22221111 111111 01 123444 47789999999986 999999999999997422
Q ss_pred HHHHHHHHcccc-CCcEEEEEccCccc-------------hh-cCCEEEEEeCC
Q 001189 282 RQVFDRCIRGEL-SGKTRVLVTNQLHF-------------LS-QVDRIILVHEG 320 (1128)
Q Consensus 282 ~~i~~~~~~~~~-~~~tvilvtH~~~~-------------l~-~~d~i~~l~~G 320 (1128)
..+++.+..... .+.|+|+++|.... +. .||.|++|++.
T Consensus 132 ~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 132 SRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 333333333222 37899999998652 33 48999999754
No 224
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.30 E-value=2.2e-13 Score=145.86 Aligned_cols=135 Identities=17% Similarity=0.189 Sum_probs=88.1
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCCcee--------ecCcEEEEecCCCCCc-ccH----HHHHhcC
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV--------IRGTVAYVPQVSWIFN-ATV----RDNILFG 207 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~--~~g~~~~--------~~~~i~~v~Q~~~l~~-~Tv----~eni~~g 207 (1128)
-..++|++++|+||||||||||+++|+|.++| ..|.+.. .+..++|++|++.+|. .++ .||+.+.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 36789999999999999999999999999986 3443221 1124788888876653 233 3333321
Q ss_pred CCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHH
Q 001189 208 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 287 (1128)
Q Consensus 208 ~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~ 287 (1128)
. ++.|-.+++ ++.++..++++||| ||+...+.+.+.
T Consensus 91 ~------------------------------------~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~ 126 (219)
T 1s96_A 91 G------------------------------------NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQK 126 (219)
T ss_dssp T------------------------------------EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHH
T ss_pred h------------------------------------ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHH
Confidence 1 001101121 23344457999999 999999999875
Q ss_pred HHccccCCcEEEEEccCccchhcCCEEEEEeCCeEeeecChhHHhh
Q 001189 288 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 333 (1128)
Q Consensus 288 ~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 333 (1128)
+ . ++.|++++||+++.+.. |+ +.+| .++.+++..
T Consensus 127 l-~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 127 M-P---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp C-T---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred c-c---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 3 2 57899999999988765 32 5666 466666543
No 225
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.28 E-value=1.7e-14 Score=173.05 Aligned_cols=173 Identities=14% Similarity=0.091 Sum_probs=116.6
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCcccc-ccHhh
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRF 837 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~~ 837 (1128)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+--..+ -+..+++++|...... .|.++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHHH
Confidence 4788999999999999999999999999999999999999999999986522222 1345777777655211 14444
Q ss_pred ccc------c----CCCCCHHHHHHHHHHhc-------------HHHHHHHc---cCCcchhhh-------cCCCCCChh
Q 001189 838 NLD------P----FSEHSDADLWEALERAH-------------LKDAIRRN---SLGLDAQVS-------EAGENFSVG 884 (1128)
Q Consensus 838 nl~------~----~~~~~~~~i~~~l~~~~-------------l~~~i~~l---p~Gldt~v~-------e~g~~LSgG 884 (1128)
++. | .++..+.+...+++.+. ..+.+.++ +.|+...+. .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 331 1 13444455555554432 23444443 233333222 122357999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcC-CcEEEE--eecCchhhhh-cC
Q 001189 885 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLI--IAHRLNTIID-CD 946 (1128)
Q Consensus 885 qrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~-~~Tvi~--vtH~l~~~~~-~D 946 (1128)
|+||.++|. + | |+|||+.+.+.+++.|.++.+ ++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999987752 1 7 999999888777777766543 688875 8999998875 63
No 226
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.27 E-value=7.1e-15 Score=155.29 Aligned_cols=147 Identities=14% Similarity=0.221 Sum_probs=94.3
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCC-------------CCCCCceeecCcEEE-----------EecCCCCCcccHH
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELP-------------PVSDASAVIRGTVAY-----------VPQVSWIFNATVR 201 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~-------------~~~g~~~~~~~~i~~-----------v~Q~~~l~~~Tv~ 201 (1128)
++|++++|+||||||||||+++|+|+++ |..|.. .+ +.| ++|+++++++++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~---~g-~~~~~~~~~~~~~~i~~~~~l~~~~~~ 77 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE---DG-KDYYFVTREMMQRDIAAGDFIEHAEFS 77 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC---BT-TTBEECCHHHHHHHHHHTCEEEEEEET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc---CC-ceEEEccHHHHHHHHHcCCCEeeeeec
Confidence 5899999999999999999999999875 444321 11 111 2567778888998
Q ss_pred HHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH-HHccCCCEEEEeCcCCCcCHHH
Q 001189 202 DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR-AVYSNSDVFIFDDPLSALDAHV 280 (1128)
Q Consensus 202 eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR-al~~~~~illLDEpts~LD~~~ 280 (1128)
+|+ +|. ..+.+.++++..... .++..+.|..+.... ++ .|| +++.+|++++|||+|+++|.++
T Consensus 78 ~n~-~g~--~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~ 141 (198)
T 1lvg_A 78 GNL-YGT--SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTET 141 (198)
T ss_dssp TEE-EEE--EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSC
T ss_pred Ccc-CCC--CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCC
Confidence 887 663 455666666542211 011122232222110 22 567 7889999999999999999999
Q ss_pred HHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeC
Q 001189 281 GRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 319 (1128)
Q Consensus 281 ~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 319 (1128)
++.|.+.+.... ++ +.++| +. ..+|+|+++++
T Consensus 142 e~~i~~~l~~~~-~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 142 EESLAKRLAAAR-TD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHH-HH---TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHHHHHHHH-HH---HHHhh--cc-CCceEEEECCC
Confidence 988877654322 11 34566 22 67899988864
No 227
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=3.8e-12 Score=146.37 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=80.0
Q ss_pred EEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccc-cccHhhccccCCCCCHHHH
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR-IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNLDPFSEHSDADL 850 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g-~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~~nl~~~~~~~~~~i 850 (1128)
.+.|+||+|+||||++++|.+ ++.|+.|.|.++|.+..... ..+..+++++|.+.+. +.+- ........+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 109 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD------MGNNDRIVI 109 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC----------CCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh------cCCcchHHH
Confidence 489999999999999999999 88999999999998765432 2367799999988642 1110 001111123
Q ss_pred HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCc
Q 001189 851 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 930 (1128)
Q Consensus 851 ~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~ 930 (1128)
.+.++.+ ... .+++..+ .||| +..+|+|+|||||++ ||+.+...+.+.|.+...++
T Consensus 110 ~~~i~~~-----~~~--~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 110 QELLKEV-----AQM--EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp HHHHHHH-----TTT--TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTE
T ss_pred HHHHHHH-----HHh--ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCC
Confidence 3332221 111 1222211 4566 778999999999999 99999999999999866678
Q ss_pred EEEEeecCchhh
Q 001189 931 TMLIIAHRLNTI 942 (1128)
Q Consensus 931 Tvi~vtH~l~~~ 942 (1128)
++|++||+++.+
T Consensus 166 ~~Il~t~~~~~l 177 (354)
T 1sxj_E 166 RLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEESCSCSS
T ss_pred EEEEEeCCHHHH
Confidence 999999998764
No 228
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.25 E-value=2.6e-13 Score=137.61 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=69.9
Q ss_pred EEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcC
Q 001189 747 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 826 (1128)
Q Consensus 747 ~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 826 (1128)
++++++|+. ..+++++||+|++|++++|+||||||||||+++|.|++ |++|+|.++|.++.+. ...+ + +++|
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~~~q 82 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--KMIY 82 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--EEEE
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--ccee
Confidence 345566643 36899999999999999999999999999999999999 9999999999877521 1112 2 7999
Q ss_pred CCccccccHhhccc
Q 001189 827 SPVLFSGTVRFNLD 840 (1128)
Q Consensus 827 ~~~lf~~Tv~~nl~ 840 (1128)
++.+|..|+.+|+.
T Consensus 83 ~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 83 HFDLYRLADPEELE 96 (158)
T ss_dssp EEECTTCSCTTHHH
T ss_pred ccccccCCcHHHHH
Confidence 99888668888874
No 229
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.24 E-value=6.9e-14 Score=148.81 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=94.1
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhc----CC--CCCHHHHHHH
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF----GS--AFEPARYEKA 218 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~----g~--~~~~~~~~~~ 218 (1128)
.++|++++|+||||||||||+++|+|+++|. | ..+++++|+...+..+..+|+.. +. .++...+.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRL 91 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------CceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHH
Confidence 4789999999999999999999999999875 3 35899999998888888777631 11 1222222222
Q ss_pred HHHhCcHHHHhcCCCC--CcccccCCCCCCChHHHHHHHHH-HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCC
Q 001189 219 IDVTSLQHDLDLLPGG--DVTEIGERGVNISGGQKQRVSMA-RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 295 (1128)
Q Consensus 219 ~~~~~l~~~~~~l~~g--~~t~vg~~g~~LSGGQkqRiaLA-Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~ 295 (1128)
+..++.+ ..+.+.+++..+||||+||+++| |+++.++.++++|||.. ..+... -
T Consensus 92 ---------l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~---~ 148 (208)
T 3c8u_A 92 ---------CHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAI---W 148 (208)
T ss_dssp ---------HHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGT---C
T ss_pred ---------HHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHh---c
Confidence 2222222 44567888999999999999998 88888888888888741 111111 1
Q ss_pred cEEEEEccCccc
Q 001189 296 KTRVLVTNQLHF 307 (1128)
Q Consensus 296 ~tvilvtH~~~~ 307 (1128)
..+|++++..+.
T Consensus 149 d~~i~vd~~~~~ 160 (208)
T 3c8u_A 149 DVSIRLEVPMAD 160 (208)
T ss_dssp SEEEEECCCHHH
T ss_pred CEEEEEeCCHHH
Confidence 467888887765
No 230
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.23 E-value=2.6e-13 Score=148.20 Aligned_cols=138 Identities=12% Similarity=0.127 Sum_probs=93.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHh---cCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccc-cHhhcccc----
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLF---RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDP---- 841 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~---g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~~---- 841 (1128)
++++++|+|||||||||++++|. |+..|+.|+|.++|.+.. ..+...+..++|++.++.. ++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988876532 1244456667777765543 77766632
Q ss_pred -------CCC--CCHHHHHHHHHHhcHHHHHHHccCC------------cchhhhcCCCCCChhHHHHHHHHHHh-ccCC
Q 001189 842 -------FSE--HSDADLWEALERAHLKDAIRRNSLG------------LDAQVSEAGENFSVGQRQLLSLSRAL-LRRS 899 (1128)
Q Consensus 842 -------~~~--~~~~~i~~~l~~~~l~~~i~~lp~G------------ldt~v~e~g~~LSgGqrqrl~lAral-l~~p 899 (1128)
... ....+... +.. ....+ ++.........||| |+ ||+ +.+|
T Consensus 102 ~~~~~~il~g~~~~~~~~~~-l~~--------~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P 165 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEA-LDK--------ICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPP 165 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHH-HHT--------TCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCC
T ss_pred cCCCeEEEECCCCCHHHHHH-HHh--------hcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCC
Confidence 001 11111111 110 00111 11122333456898 55 788 9999
Q ss_pred CEEEEe----ccccCCCHHHHHHHHHHHHHHc
Q 001189 900 KILVLD----EATAAVDVRTDALIQKTIREEF 927 (1128)
Q Consensus 900 ~iLlLD----EpTs~lD~~t~~~i~~~l~~~~ 927 (1128)
++++|| |||+++|..+.+.+.+.|+++.
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 999999 9999999999999999987753
No 231
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.21 E-value=1.4e-11 Score=143.28 Aligned_cols=147 Identities=16% Similarity=0.223 Sum_probs=90.0
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHH--HhcCCCCCCc-----eEEECCEecCC-CChHHhhhceEEEcCCCccccccHhhc
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNT--LFRIVELERG-----RILIDGFDIAK-FGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~--l~g~~~p~~G-----~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
-|++|++++|+||+|||||||++. +.+..+++.| .|++++.+... .....+++++++.|| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 578999999999999999999994 4566666444 88888865311 111223344555443 44555
Q ss_pred cccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEeccccCCCHHHH
Q 001189 839 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDVRTD 916 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall--~~p~iLlLDEpTs~lD~~t~ 916 (1128)
+.+......+. +.+.+.-++.++ .+|+++++||||+.+|.+..
T Consensus 247 i~~~~~~~~~~-----------------------------------~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARAYNADH-----------------------------------QLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEECCSHHH-----------------------------------HHHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEeccCChHH-----------------------------------HHHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 54322222111 112222222222 47999999999999997543
Q ss_pred ------------HHHHHHHHHHc--CCcEEEEeecCch-------------------hhhh-cCEEEEEeCCE
Q 001189 917 ------------ALIQKTIREEF--KSCTMLIIAHRLN-------------------TIID-CDRILLLDSGR 955 (1128)
Q Consensus 917 ------------~~i~~~l~~~~--~~~Tvi~vtH~l~-------------------~~~~-~D~i~vl~~G~ 955 (1128)
..+.+.|+++. .++|||+|+|... .+.+ ||.++.|++|+
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 44555666543 3799999999822 2344 89999998653
No 232
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.21 E-value=2.1e-11 Score=141.30 Aligned_cols=73 Identities=25% Similarity=0.318 Sum_probs=65.9
Q ss_pred CCChhHHHHH------HHHHHhccC-CCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhhhhcCEEEEEe
Q 001189 880 NFSVGQRQLL------SLSRALLRR-SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 952 (1128)
Q Consensus 880 ~LSgGqrqrl------~lArall~~-p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~~~~D~i~vl~ 952 (1128)
.||||||||+ ++||++..+ |++|||||||++||+.+...+.+.|++...+++||+|||+++....||++++|+
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence 5999999987 668999999 999999999999999999999999998655679999999987555599999997
No 233
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.20 E-value=4e-13 Score=155.01 Aligned_cols=206 Identities=9% Similarity=0.011 Sum_probs=127.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCC---CCCCCcE---------EE
Q 001189 55 GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPL---TSGLPAI---------SI 122 (1128)
Q Consensus 55 ~~lt~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~~~~s~~Ri~~~l~~~~~~~~~~~~~---~~~~~~i---------~~ 122 (1128)
+.++.+.+..++.++..+..| .+....+.+..+..+..|+++++ ++......+.. ......+ .|
T Consensus 63 ~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~itl~~l~~~g~f 138 (361)
T 2gza_A 63 PNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRTLEDYAQQGFF 138 (361)
T ss_dssp TTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCCHHHHHhcCCc
Confidence 678999988888777766555 22222222223334456777666 21111100000 0001124 67
Q ss_pred EeEEEE---eCCCCCCCce---------eeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee---------
Q 001189 123 RNGYFS---WDSKAERPTL---------LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------- 181 (1128)
Q Consensus 123 ~~~~f~---~~~~~~~~~L---------~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------- 181 (1128)
++++|+ |++. ++++| +++||.+++|+.++|+||||||||||+++|+|+++|++|.+..
T Consensus 139 ~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~ 217 (361)
T 2gza_A 139 KHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLP 217 (361)
T ss_dssp SCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCT
T ss_pred Cccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCcc
Confidence 888888 7521 23455 9999999999999999999999999999999999997654321
Q ss_pred -ecCcEEEEe-cCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001189 182 -IRGTVAYVP-QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 259 (1128)
Q Consensus 182 -~~~~i~~v~-Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARa 259 (1128)
.+..++|++ |++.+ .++++..+|-.|+++
T Consensus 218 ~~~~~v~~v~~q~~~~-------------------------------------------------~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 218 DHPNHVHLFYPSEAKE-------------------------------------------------EENAPVTAATLLRSC 248 (361)
T ss_dssp TCSSEEEEECC-----------------------------------------------------------CCHHHHHHHH
T ss_pred ccCCEEEEeecCcccc-------------------------------------------------ccccccCHHHHHHHH
Confidence 122344544 33210 123455678889999
Q ss_pred HccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEeCCe
Q 001189 260 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM 321 (1128)
Q Consensus 260 l~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 321 (1128)
+..+|+.+++|||.. .+..+ .++.+- ....|++.++|..+....+||+..+..|.
T Consensus 249 l~~~pd~~l~~e~r~---~~~~~-~l~~l~---~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 249 LRMKPTRILLAELRG---GEAYD-FINVAA---SGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp TTSCCSEEEESCCCS---THHHH-HHHHHH---TTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred HhcCCCEEEEcCchH---HHHHH-HHHHHh---cCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999999986 23222 222221 22357889999987666689998887653
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.18 E-value=2.5e-11 Score=137.59 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=104.4
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH----hhhc--eEEEcCCCccccc-cHhhccc
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----LRKI--LGIIPQSPVLFSG-TVRFNLD 840 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~----~r~~--i~~v~Q~~~lf~~-Tv~~nl~ 840 (1128)
.++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+......+ ++++ +.+++|++.++.. ++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999998766433 2333 5699999887754 7888774
Q ss_pred cCCCCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCC--CCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHH
Q 001189 841 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGE--NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917 (1128)
Q Consensus 841 ~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~-v~e~g~--~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~ 917 (1128)
.. ... +.|.. +...|. .-..=.++.-.++|++..++++++||.+|. .|.
T Consensus 206 ~~-----------~~~------------~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~---- 257 (328)
T 3e70_C 206 HA-----------KAR------------GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAI---- 257 (328)
T ss_dssp HH-----------HHH------------TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THH----
T ss_pred HH-----------Hhc------------cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHH----
Confidence 21 000 11110 111111 011123445568999998888999996654 322
Q ss_pred HHHHHHHHHc--CCcEEEEeecCchhh---------hh-cCEEEEEeCCEEE
Q 001189 918 LIQKTIREEF--KSCTMLIIAHRLNTI---------ID-CDRILLLDSGRVL 957 (1128)
Q Consensus 918 ~i~~~l~~~~--~~~Tvi~vtH~l~~~---------~~-~D~i~vl~~G~i~ 957 (1128)
.+.++... .+.|+|++||--.+. .. .-.|..+..|+-+
T Consensus 258 --~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 258 --VEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp --HHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred --HHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 22233222 478999999943221 11 3456666666644
No 235
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.17 E-value=6e-14 Score=164.03 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=90.8
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHHhhhc
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRKI 820 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~~ 820 (1128)
+++++++.|.. ..+|+++ + .++|++++|+||||||||||+++|+|++.|++|+|.+.|.++... +...+++.
T Consensus 145 ~l~~Lg~~~~~--~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 145 DLHSLGMTAHN--HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CGGGSCCCHHH--HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CHHHcCCCHHH--HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 34444444421 1367777 4 389999999999999999999999999999999999998877421 11223445
Q ss_pred eEEEc---------CCCccc--c-----ccHhhccccC----------CCCCHHHHHHHHHHhcHHHHHHHccCCcchhh
Q 001189 821 LGIIP---------QSPVLF--S-----GTVRFNLDPF----------SEHSDADLWEALERAHLKDAIRRNSLGLDAQV 874 (1128)
Q Consensus 821 i~~v~---------Q~~~lf--~-----~Tv~~nl~~~----------~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v 874 (1128)
+++.+ |+|.++ . .|+.+++... ...+..+..+.+...++ +...
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl-----------~~~~ 289 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGI-----------EPFL 289 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTC-----------CHHH
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCC-----------cHHH
Confidence 55544 888652 2 2677666421 00111222223333332 2221
Q ss_pred hcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001189 875 SEAGENFSVGQRQLLSLSRALLRRSKILV 903 (1128)
Q Consensus 875 ~e~g~~LSgGqrqrl~lArall~~p~iLl 903 (1128)
...+|||||+|| |||+++.+|++..
T Consensus 290 --~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 --ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp --HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred --HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 224699999999 9999999999875
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.17 E-value=1.8e-11 Score=139.48 Aligned_cols=122 Identities=16% Similarity=0.094 Sum_probs=80.6
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEEC-CEecCCCChHHhhhceEEEcCCCccccc-cHh
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILID-GFDIAKFGLMDLRKILGIIPQSPVLFSG-TVR 836 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-p~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~ 836 (1128)
-++++++. .+|++++|+||||||||||+++|.|... |..|+|.++ |.+.. ...+..++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777764 4799999999999999999999999999 999999987 76542 1345679999999988765 898
Q ss_pred hccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 837 FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 837 ~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
++-. . ....+++.+. +.++++. .|+....+....+|| ||+||++||++++
T Consensus 280 e~~l-~-~l~~~e~~~~-----~~e~l~~--~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGL-W-HLEPEQITQG-----FVEFHDY--LGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCC-C-CCCHHHHHHT-----SGGGGGG--TTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhh-c-CCCHHHHHHH-----HHHHHHH--cCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 8632 1 2333333221 2222222 244444455556899 9999999999864
No 237
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.16 E-value=3.8e-11 Score=142.01 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=65.5
Q ss_pred CCChHHHHHHHHHHHHc----cCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEEEe
Q 001189 245 NISGGQKQRVSMARAVY----SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVH 318 (1128)
Q Consensus 245 ~LSGGQkqRiaLARal~----~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 318 (1128)
.||||||||++||++|+ .+|++|||||||++||+...+.+.+.+......+.++|+|||+...+..||+++.|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 689999999999999999999998865443334789999999988888899999985
No 238
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.15 E-value=5.5e-11 Score=137.80 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=64.6
Q ss_pred CCCChHHHHHH------HHHHHHccC-CCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccchhcCCEEEE
Q 001189 244 VNISGGQKQRV------SMARAVYSN-SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIIL 316 (1128)
Q Consensus 244 ~~LSGGQkqRi------aLARal~~~-~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~ 316 (1128)
..||||||||+ ++||+|..+ |+++||||||++||+...+.+.+.+.. ...+.++|+|||+++....||++++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~-~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK-VKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHH-CCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHH-hccCCeEEEEEChHHHHhhCCEEEE
Confidence 58999999988 667999999 999999999999999999999886544 3345799999999987677999999
Q ss_pred Ee
Q 001189 317 VH 318 (1128)
Q Consensus 317 l~ 318 (1128)
|+
T Consensus 358 l~ 359 (371)
T 3auy_A 358 VK 359 (371)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 239
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.14 E-value=3.3e-11 Score=121.03 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=68.7
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc--eEEECCEecCCCChHHhhhceEEEcCCCccccccHhh
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG--RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 837 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G--~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~ 837 (1128)
+|+++ +|+.++|+||||+|||||++++.+.+.+ +| .+++++.++..
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~-------------------------- 77 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL-------------------------- 77 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------------------------
Confidence 56666 8999999999999999999999999987 56 55554322110
Q ss_pred ccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHH
Q 001189 838 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 917 (1128)
Q Consensus 838 nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~ 917 (1128)
. +++.+|++|+||||++ +|...++
T Consensus 78 ------~-------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 78 ------T-------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp ------C-------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred ------H-------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 0 2356899999999998 6655588
Q ss_pred HHHHHHHHHc-CCcE-EEEeecC
Q 001189 918 LIQKTIREEF-KSCT-MLIIAHR 938 (1128)
Q Consensus 918 ~i~~~l~~~~-~~~T-vi~vtH~ 938 (1128)
.+.+.+.... .+++ +|++||+
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHcCCcEEEEECCC
Confidence 8888887754 3577 7888875
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.13 E-value=4.3e-12 Score=132.55 Aligned_cols=126 Identities=14% Similarity=0.063 Sum_probs=77.6
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------ecCcEEEEecCCCCCcccHHHHHhcCCCCCHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA 213 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~ 213 (1128)
.+++|++++|+|+||||||||+++|+|. |..|.+.. .+..++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~----- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAADVA----- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHHHH-----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh-hhHHHHHHHHHHH-----
Confidence 4789999999999999999999999998 43342211 1122566676544 3568888875421
Q ss_pred HHHHHHHHhCcHHHHhcCCC--CCcc--cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHH
Q 001189 214 RYEKAIDVTSLQHDLDLLPG--GDVT--EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 288 (1128)
Q Consensus 214 ~~~~~~~~~~l~~~~~~l~~--g~~t--~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~ 288 (1128)
. .....+-...++.... +... ..+.....+|+||+||+++||++.++|+++ +|+...+.+++.+
T Consensus 77 ~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 77 G---RYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp H---HHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred H---HHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 0 0001110000110000 0000 012234579999999999999999999876 5888777777644
No 241
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.13 E-value=1.1e-11 Score=128.26 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=75.4
Q ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCC
Q 001189 765 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE 844 (1128)
Q Consensus 765 sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~ 844 (1128)
+|.+++|+.++|+||||+|||||++++++.+.|.+|...+ + -+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~------------------~---------~~~~-------- 76 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY------------------F---------FDTK-------- 76 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC------------------E---------EEHH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE------------------E---------EEHH--------
Confidence 4567889999999999999999999999998876663110 0 0111
Q ss_pred CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecccc-CCCHHHHHHHHHHH
Q 001189 845 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA-AVDVRTDALIQKTI 923 (1128)
Q Consensus 845 ~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs-~lD~~t~~~i~~~l 923 (1128)
++.+.+.. .... . ... -....+.+|++|+||||++ ++|+.....+.+.+
T Consensus 77 ----~~~~~~~~-----~~~~-----------~--~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 77 ----DLIFRLKH-----LMDE-----------G--KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp ----HHHHHHHH-----HHHH-----------T--CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred ----HHHHHHHH-----HhcC-----------c--hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 11111110 0000 0 010 1112245899999999995 89999999999999
Q ss_pred HHHc-CCcEEEEeecCch
Q 001189 924 REEF-KSCTMLIIAHRLN 940 (1128)
Q Consensus 924 ~~~~-~~~Tvi~vtH~l~ 940 (1128)
.... .++++|++||...
T Consensus 127 ~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 127 TYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHTTCEEEEECCCCS
T ss_pred HHHHHcCCCEEEEcCCCh
Confidence 8765 6899999999864
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.09 E-value=1.2e-11 Score=139.11 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=77.6
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE---CCEecCCCChHHhh-hceEEEcCCCccc------cccHh
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI---DGFDIAKFGLMDLR-KILGIIPQSPVLF------SGTVR 836 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i---~g~~i~~~~~~~~r-~~i~~v~Q~~~lf------~~Tv~ 836 (1128)
.+.+|++++|+||||||||||+++|. +..|++|+|.+ +|.+++.... ..+ +.+|+++|+|.+. ..|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9998876432 223 3699999999542 3478
Q ss_pred hcc--cc---------CCC--C---CHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 837 FNL--DP---------FSE--H---SDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 837 ~nl--~~---------~~~--~---~~~~i~~~l~~~~l~~-~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+|+ .+ +.. + ....+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 777 22 111 1 2345777777777654 333332 359998899999987
No 243
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.08 E-value=1.1e-12 Score=145.55 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=103.5
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCC-cccc-ccHh
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP-VLFS-GTVR 836 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~Tv~ 836 (1128)
.+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++........++.+++++|++ ..+. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 5789999999999 999999999999999999999887 79999999887766666778899999986 3333 3677
Q ss_pred hccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccC------
Q 001189 837 FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA------ 910 (1128)
Q Consensus 837 ~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~------ 910 (1128)
+|++......... +. . ...+.+.. .+ ..|||||+||..+++|+.++|++| |||+.-
T Consensus 110 Deid~~~~~r~~~--~~-~--~~~~~~~~-------~l----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSDR--ET-G--ASVRVVNQ-------LL----TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC--------------CTTHHHH-------HH----HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCCC--cc-h--HHHHHHHH-------HH----HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 8887543211100 00 0 00011111 11 359999999999999999999975 999752
Q ss_pred ------CCHHHHHHHHHHHH
Q 001189 911 ------VDVRTDALIQKTIR 924 (1128)
Q Consensus 911 ------lD~~t~~~i~~~l~ 924 (1128)
-|.+.+..|++.+.
T Consensus 172 ~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeCCcCHHHHHHHHHHHH
Confidence 25666666666543
No 244
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.05 E-value=1.6e-12 Score=146.94 Aligned_cols=139 Identities=18% Similarity=0.208 Sum_probs=94.2
Q ss_pred ccEEEEEEEEEeCCCCCCceeeeeEEE-------------------cCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCc
Q 001189 742 GSIKFEDVVLRYRPELPPVLHGLSFTI-------------------PPSDKVGIVGRTGAGKSSMLNTLFRIVE--LERG 800 (1128)
Q Consensus 742 g~i~~~~v~~~y~~~~~~~l~~vsl~i-------------------~~Ge~v~ivG~~GsGKSTll~~l~g~~~--p~~G 800 (1128)
+.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|.|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4589999999993 6899999988 9999999999999999999999999998 9999
Q ss_pred eEEE---CCEecCCCChHHhhhceEEEcCCCcccc-ccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhc
Q 001189 801 RILI---DGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 876 (1128)
Q Consensus 801 ~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e 876 (1128)
+|.+ ||.+. + ...++.++++ |+..++. .|+.+|+.. + ..+..|-. .+.-
T Consensus 112 ~i~vi~~d~~~~---~-~~~~~~~~~v-q~~~~~~~~~~~~~~~~------------~---------~~l~~~~~-~i~~ 164 (308)
T 1sq5_A 112 RVELITTDGFLH---P-NQVLKERGLM-KKKGFPESYDMHRLVKF------------V---------SDLKSGVP-NVTA 164 (308)
T ss_dssp CEEEEEGGGGBC---C-HHHHHHHTCT-TCTTSGGGBCHHHHHHH------------H---------HHHTTTCS-CEEE
T ss_pred eEEEEecCCccC---c-HHHHHhCCEe-ecCCCCCCccHHHHHHH------------H---------HHHhCCCC-ceec
Confidence 9999 88764 2 2456678888 7665443 256555432 1 11111111 0000
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCH
Q 001189 877 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913 (1128)
Q Consensus 877 ~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~ 913 (1128)
.....+.+ +|+..+.+.+.+++++|+|.|....+.
T Consensus 165 P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 165 PVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred cccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 00111222 333333355678899999999887663
No 245
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.05 E-value=1.7e-10 Score=119.44 Aligned_cols=112 Identities=23% Similarity=0.201 Sum_probs=72.6
Q ss_pred eEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001189 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 221 (1128)
Q Consensus 142 sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 221 (1128)
+|.+++|+.++|+||||+|||||++++++.+.|..|... .|+ +..+.+ +.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------~~~---------~~~~~~--------~~~~~~--- 85 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------YFF---------DTKDLI--------FRLKHL--- 85 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------CEE---------EHHHHH--------HHHHHH---
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------EEE---------EHHHHH--------HHHHHH---
Confidence 467788999999999999999999999999865554321 121 111211 011111
Q ss_pred hCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCC-CcCHHHHHHHHHHHHccccCCcEEEE
Q 001189 222 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCIRGELSGKTRVL 300 (1128)
Q Consensus 222 ~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts-~LD~~~~~~i~~~~~~~~~~~~tvil 300 (1128)
... + ... -....+.+|++|+||||++ ++|+...+.+++.+-.....|+++|+
T Consensus 86 ------~~~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~ 138 (180)
T 3ec2_A 86 ------MDE---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTII 138 (180)
T ss_dssp ------HHH---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ------hcC---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 100 0 000 0112245899999999995 89999888777644333346899999
Q ss_pred EccCcc
Q 001189 301 VTNQLH 306 (1128)
Q Consensus 301 vtH~~~ 306 (1128)
+||...
T Consensus 139 tsn~~~ 144 (180)
T 3ec2_A 139 TTNYSL 144 (180)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 999864
No 246
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.02 E-value=1.3e-09 Score=117.89 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=82.2
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhc--CCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 221 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G--~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 221 (1128)
.+++|++++|+||||||||||++.|++ ..+|..|+. .+.+.|+.-+..+ +.+++.+.++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~---~~~~~~i~~~~~~---------------~~~~~~~~~~~ 81 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGG---EGKAMYIDTEGTF---------------RPERLLAVAER 81 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCC---SSEEEEEESSSCC---------------CHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCC---CCeEEEEECCCCc---------------CHHHHHHHHHH
Confidence 589999999999999999999999999 455532211 1345565544321 11222222222
Q ss_pred hCcHH--HHhcCCCCCcccccCCCCCCChHHHHH-HHHHHHHc--cCCCEEEEeCcCCCcCHH-------H-----HHHH
Q 001189 222 TSLQH--DLDLLPGGDVTEIGERGVNISGGQKQR-VSMARAVY--SNSDVFIFDDPLSALDAH-------V-----GRQV 284 (1128)
Q Consensus 222 ~~l~~--~~~~l~~g~~t~vg~~g~~LSGGQkqR-iaLARal~--~~~~illLDEpts~LD~~-------~-----~~~i 284 (1128)
.+... .++.+ ... ...++.+... +.-++.++ .+|+++++|||++.+|+. . ...+
T Consensus 82 ~g~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~ 152 (243)
T 1n0w_A 82 YGLSGSDVLDNV-----AYA----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARF 152 (243)
T ss_dssp TTCCHHHHHHTE-----EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHH
T ss_pred cCCCHHHHhhCe-----EEE----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHH
Confidence 22110 01110 000 1245554332 33333333 589999999999999985 3 2234
Q ss_pred HHHHHcccc-CCcEEEEEccCccch-------------------h-cCCEEEEEeCC
Q 001189 285 FDRCIRGEL-SGKTRVLVTNQLHFL-------------------S-QVDRIILVHEG 320 (1128)
Q Consensus 285 ~~~~~~~~~-~~~tvilvtH~~~~l-------------------~-~~d~i~~l~~G 320 (1128)
+..+..... .|.|+|+++|..... . .||.+++|++|
T Consensus 153 ~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 153 LRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 443333222 489999999965432 2 47999999865
No 247
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.02 E-value=1.8e-13 Score=143.11 Aligned_cols=165 Identities=12% Similarity=0.006 Sum_probs=95.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee------cCcEEEEecCCCC-CcccHHHHHhcCCCCCHHHHHHHHH
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------RGTVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAID 220 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------~~~i~~v~Q~~~l-~~~Tv~eni~~g~~~~~~~~~~~~~ 220 (1128)
|++++|+||||||||||++.|++ |..|....- ...+++++|.+.. ...++++|+.+. ......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-------TVNFLL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-------HHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-------HHHHHh
Confidence 67899999999999999999998 333422211 1124566665432 245777776531 000000
Q ss_pred HhCcHHHHhcCCCCCcccccCCCCCC--ChHHHHHHHHHH------HHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc
Q 001189 221 VTSLQHDLDLLPGGDVTEIGERGVNI--SGGQKQRVSMAR------AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 292 (1128)
Q Consensus 221 ~~~l~~~~~~l~~g~~t~vg~~g~~L--SGGQkqRiaLAR------al~~~~~illLDEpts~LD~~~~~~i~~~~~~~~ 292 (1128)
.+....++.. .+.. .. +.-..+ |+|++|++.++. +++.+++...+|+ ++|+...+. ++.+....
T Consensus 72 -~~~~~ild~~-~~~~-~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~ 143 (189)
T 2bdt_A 72 -AQNDVVLDYI-AFPD-EA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG 143 (189)
T ss_dssp -TTCEEEEESC-CCHH-HH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred -cCCcEEEeec-cCHH-HH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence 0000000000 0000 00 001134 888888888777 8888888777783 789987777 66554433
Q ss_pred cCCcEEEEEccC-ccchhc-CCEEEEEeCCeEeeecChhHHh
Q 001189 293 LSGKTRVLVTNQ-LHFLSQ-VDRIILVHEGMVKEEGTFEDLS 332 (1128)
Q Consensus 293 ~~~~tvilvtH~-~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 332 (1128)
..+.++|.+||. ++.+.. ||+|+ ++|+++..|+++.+.
T Consensus 144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 346899999998 888775 79998 999999999876553
No 248
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.02 E-value=8.2e-12 Score=136.29 Aligned_cols=136 Identities=15% Similarity=0.080 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHh---cCCCCCCCCceee--------cCcEEEEecCCCCC-cccHHHHHhc--------
Q 001189 147 VGSLVAIVGGTGEGKTSLISAML---GELPPVSDASAVI--------RGTVAYVPQVSWIF-NATVRDNILF-------- 206 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~---G~~~~~~g~~~~~--------~~~i~~v~Q~~~l~-~~Tv~eni~~-------- 206 (1128)
++++++|+|+||||||||+++|+ |...|+.|....- ...+.+++|++.++ ..++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999 9988876543221 11245566776654 5688888853
Q ss_pred -----CCCCCHHHHHHHHHHhCcH--HHHhcCCCC-CcccccCCCCCCChHHHHHHHHHHHH-ccCCCEEEEe----CcC
Q 001189 207 -----GSAFEPARYEKAIDVTSLQ--HDLDLLPGG-DVTEIGERGVNISGGQKQRVSMARAV-YSNSDVFIFD----DPL 273 (1128)
Q Consensus 207 -----g~~~~~~~~~~~~~~~~l~--~~~~~l~~g-~~t~vg~~g~~LSGGQkqRiaLARal-~~~~~illLD----Ept 273 (1128)
|.+....+........... -.++.-+.. ...........||| |+ ||+ +.+|++++|| |||
T Consensus 106 ~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~ 178 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPL 178 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBC
T ss_pred eEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccccc
Confidence 1111221111111101100 000000000 00011223457999 66 788 9999999999 999
Q ss_pred CCcCHHHHHHHHHHHH
Q 001189 274 SALDAHVGRQVFDRCI 289 (1128)
Q Consensus 274 s~LD~~~~~~i~~~~~ 289 (1128)
++||+.+.+.+.+.+.
T Consensus 179 ~~ld~~~~~~i~~~l~ 194 (246)
T 2bbw_A 179 VQQEDDKPEAVAARLR 194 (246)
T ss_dssp BCCGGGSHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHH
Confidence 9999998887776543
No 249
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.01 E-value=4.4e-11 Score=121.18 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=62.5
Q ss_pred eEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCc-------EEEEecCCCCC
Q 001189 124 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------VAYVPQVSWIF 196 (1128)
Q Consensus 124 ~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~-------i~~v~Q~~~l~ 196 (1128)
++++.|+ ++.+++++||++++|++++|+||||||||||+++|+|.+ |++|.+..-... -.+++|++.++
T Consensus 12 ~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~ 87 (158)
T 1htw_A 12 FSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY 87 (158)
T ss_dssp HHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT
T ss_pred HHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc
Confidence 4455554 246899999999999999999999999999999999999 877754221000 12799998888
Q ss_pred cccHHHHHh-cC
Q 001189 197 NATVRDNIL-FG 207 (1128)
Q Consensus 197 ~~Tv~eni~-~g 207 (1128)
..|+.||+. +|
T Consensus 88 ~ltv~e~l~~~g 99 (158)
T 1htw_A 88 RLADPEELEFMG 99 (158)
T ss_dssp TCSCTTHHHHST
T ss_pred cCCcHHHHHHcC
Confidence 889999985 45
No 250
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.00 E-value=3.1e-10 Score=113.87 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=67.1
Q ss_pred ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001189 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 216 (1128)
Q Consensus 137 ~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 216 (1128)
+|+++ +|+.++|+||+|||||||+++++|++.+ .|. .+.|++.......
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~------~~~~~~~~~~~~~------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK------NAAYIDAASMPLT------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC------CEEEEETTTSCCC-------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC------cEEEEcHHHhhHH-------------------
Confidence 45555 8999999999999999999999998876 331 3556655432111
Q ss_pred HHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCc
Q 001189 217 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 296 (1128)
Q Consensus 217 ~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~ 296 (1128)
+++.+|++|+||||++ +|...++.+++.+-....+|+
T Consensus 79 ------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~ 115 (149)
T 2kjq_A 79 ------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGK 115 (149)
T ss_dssp ------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCC
Confidence 2356899999999998 666557777764433334567
Q ss_pred E-EEEEccC
Q 001189 297 T-RVLVTNQ 304 (1128)
Q Consensus 297 t-vilvtH~ 304 (1128)
+ +|++||.
T Consensus 116 ~~iiits~~ 124 (149)
T 2kjq_A 116 GFLLLGSEY 124 (149)
T ss_dssp CEEEEEESS
T ss_pred cEEEEECCC
Confidence 7 7777774
No 251
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.00 E-value=5.6e-11 Score=135.49 Aligned_cols=115 Identities=18% Similarity=0.214 Sum_probs=76.4
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC-CCCCCcee---------ecCcEEEEecCCCCC-cccHHHHH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDASAV---------IRGTVAYVPQVSWIF-NATVRDNI 204 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~-~~~g~~~~---------~~~~i~~v~Q~~~l~-~~Tv~eni 204 (1128)
.-++++++. .+|++++|+|+||+|||||+++|+|... |..|.+.. .+..+++++|+++++ ..||+++.
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh
Confidence 357777775 4899999999999999999999999998 88775432 234689999999887 56999964
Q ss_pred hcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 001189 205 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 261 (1128)
Q Consensus 205 ~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~ 261 (1128)
+.+ .+.+...+. ..+.++.+. .....+....+|| ||+||++||+++.
T Consensus 283 l~~--l~~~e~~~~-----~~e~l~~~g--l~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 283 LWH--LEPEQITQG-----FVEFHDYLG--HCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp CCC--CCHHHHHHT-----SGGGGGGTT--CSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred hcC--CCHHHHHHH-----HHHHHHHcC--CchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 432 333332211 112222211 1111233346899 9999999999753
No 252
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.99 E-value=1.1e-10 Score=136.31 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=91.9
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhcc
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 839 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl 839 (1128)
--++++|+++.|++++|+|+||||||||+++|++... .+.+.+..++ ...+++++++.. ...++.++.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~Dtp 213 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIP 213 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEecc
Confidence 3589999999999999999999999999999999843 3455444433 335777777641 011222221
Q ss_pred ccC------CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCH
Q 001189 840 DPF------SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 913 (1128)
Q Consensus 840 ~~~------~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~ 913 (1128)
-.. ...... ..+.++++. ..+..+ ++. .....+||+|++|++.+|++|..+|.||++ +.+|.
T Consensus 214 Gli~~a~~~~~L~~~-fl~~~era~--~lL~vv--Dls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 214 GIIEGASEGKGLGLE-FLRHIARTR--VLLYVL--DAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp CCCCCGGGSCCSCHH-HHHHHTSSS--EEEEEE--ETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred ccccchhhhhhhhHH-HHHHHHHHH--hhhEEe--CCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 110 011111 111111110 011111 110 111235999999999999999999999999 99998
Q ss_pred HHHHHHHHHHHHHc-CCcEEEEeec
Q 001189 914 RTDALIQKTIREEF-KSCTMLIIAH 937 (1128)
Q Consensus 914 ~t~~~i~~~l~~~~-~~~Tvi~vtH 937 (1128)
.....+.+..+... .+.+++.||.
T Consensus 282 ~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 282 LEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp SCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 76633333333222 3556666654
No 253
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.98 E-value=1.8e-10 Score=135.55 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=93.7
Q ss_pred eeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee------------------cCcEEEEecCCCCC-cc
Q 001189 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSWIF-NA 198 (1128)
Q Consensus 138 L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~l~-~~ 198 (1128)
-+++||++++|++++|+|+||||||||++.|+|++.+.+|.+... +..|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 458899999999999999999999999999999998876654321 23589999998765 67
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHcc-CC-CEEEEeCcCCCc
Q 001189 199 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS-NS-DVFIFDDPLSAL 276 (1128)
Q Consensus 199 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~-~~-~illLDEpts~L 276 (1128)
|+++||.++.. .+.+..+-...+.... -.+|-.--+|++.++|++.. .| .++|..||+++.
T Consensus 363 tV~e~l~~a~~------------~~~DvVLIDTaGrl~~-----~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 363 VIFDAIQAAKA------------RNIDVLIADTAGRLQN-----KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHH------------TTCSEEEECCCCSCCC-----HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHh------------cCCCEEEEeCCCccch-----hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 99999976411 0000000000110000 01233344688899998754 45 466667799887
Q ss_pred CHHHHHHHHHHHHccccCCcEEEEEcc
Q 001189 277 DAHVGRQVFDRCIRGELSGKTRVLVTN 303 (1128)
Q Consensus 277 D~~~~~~i~~~~~~~~~~~~tvilvtH 303 (1128)
|+.....-|.. ..+.|.|++||
T Consensus 426 ~al~~ak~f~~-----~~~itgvIlTK 447 (503)
T 2yhs_A 426 NAVSQAKLFHE-----AVGLTGITLTK 447 (503)
T ss_dssp HHHHHHHHHHH-----HTCCSEEEEEC
T ss_pred HHHHHHHHHHh-----hcCCCEEEEEc
Confidence 76533222221 23678999999
No 254
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.97 E-value=1.6e-10 Score=129.94 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=68.0
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE---CCEecCCCChHHhhhceEEEcCCCc-------------
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI---DGFDIAKFGLMDLRKILGIIPQSPV------------- 829 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~------------- 829 (1128)
|++.+|++++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456679999999999999999999999999999999999 9999876542211236899999985
Q ss_pred ---cccc-cHhhccccCC----CCCHHHHHHHHHHhcH-HHHHHHcc
Q 001189 830 ---LFSG-TVRFNLDPFS----EHSDADLWEALERAHL-KDAIRRNS 867 (1128)
Q Consensus 830 ---lf~~-Tv~~nl~~~~----~~~~~~i~~~l~~~~l-~~~i~~lp 867 (1128)
+|.. |+ +|+.+.. ......+.++|+..++ .+..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 3543 77 8887531 1234568889999888 46666655
No 255
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.97 E-value=2.1e-12 Score=139.62 Aligned_cols=147 Identities=7% Similarity=0.058 Sum_probs=56.2
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh-cCCCCCCceEEECCEecCCCChHH-hhhceEEEcCCCccccc-cH
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-RIVELERGRILIDGFDIAKFGLMD-LRKILGIIPQSPVLFSG-TV 835 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~-g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~~-Tv 835 (1128)
...+++||++++|+++||+||||||||||+++|. |++++ ..++.++...++.. .+..+.|.++++..|.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN-----IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C-----EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC-----cccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 4578999999999999999999999999999999 99843 12233222211111 11224456666554432 33
Q ss_pred hhcccc----CCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh--hHHHHH-HHHH-HhccCCCEEEE
Q 001189 836 RFNLDP----FSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV--GQRQLL-SLSR-ALLRRSKILVL 904 (1128)
Q Consensus 836 ~~nl~~----~~~---~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSg--Gqrqrl-~lAr-all~~p~iLlL 904 (1128)
.+++.. +.. ...+++.+.++... ...+. ..+.| .-++++ .-++ .++..|+..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~vild---~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l 154 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGV------------STLLV---IDWQGAFKFMEMMREHVVSIFIMPPSMEEL 154 (231)
T ss_dssp TTCEEEEEEETTEEEEEECTTHHHHHHHTC------------EEEEE---CCHHHHHHHHHHSGGGEEEEEEECSCHHHH
T ss_pred cCceehhhhhccccCCCCHHHHHHHHHcCC------------eEEEE---cCHHHHHHHHHhcCCCeEEEEEECCcHHHH
Confidence 333321 110 01122333333210 00000 00101 113333 1122 34567788888
Q ss_pred eccccCCCHHHHHHHHHHHHH
Q 001189 905 DEATAAVDVRTDALIQKTIRE 925 (1128)
Q Consensus 905 DEpTs~lD~~t~~~i~~~l~~ 925 (1128)
+|++.+.|..+++.+.+.|.+
T Consensus 155 ~~Rl~~R~~~~~~~i~~rl~~ 175 (231)
T 3lnc_A 155 RRRLCGRRADDSEVVEARLKG 175 (231)
T ss_dssp HHC--------------CHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHH
Confidence 999999998888888777764
No 256
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.95 E-value=2.4e-12 Score=148.82 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=111.1
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEecCCCC-hHHhhhce---EEEcCCCcc
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFR------------IVELERGRILIDGFDIAKFG-LMDLRKIL---GIIPQSPVL 830 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g------------~~~p~~G~I~i~g~~i~~~~-~~~~r~~i---~~v~Q~~~l 830 (1128)
.+++|+++||+|+||+|||||+++|+| ..+|+.|.|.++|..+..+. ...-++.+ .++++.|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 67899999999874321110 00011222 467788877
Q ss_pred ccc-cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC--CEEEEecc
Q 001189 831 FSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS--KILVLDEA 907 (1128)
Q Consensus 831 f~~-Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p--~iLlLDEp 907 (1128)
..+ +..++|. . .....++.+.. +... +|..-......+||+. +| +++++|||
T Consensus 96 ~~~~s~~e~L~------~-~fl~~ir~~d~---il~V---vd~~~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLG------N-AFLSHVRAVDA---IYQV---VRAFDDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSC------H-HHHHHHTTCSE---EEEE---EECCCTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHH------H-HHHHHHHHHHH---HHHH---Hhccccceeeeecccc------------Ccchhhhhchhh
Confidence 654 4444442 0 11111111110 0000 0000011222345542 88 99999999
Q ss_pred ccCCCHHHHHHHHHHHHHH-cC-CcEEEEeecCchhhhh-cCEEE-EEeCC-EEEEecChh
Q 001189 908 TAAVDVRTDALIQKTIREE-FK-SCTMLIIAHRLNTIID-CDRIL-LLDSG-RVLEYDTPE 963 (1128)
Q Consensus 908 Ts~lD~~t~~~i~~~l~~~-~~-~~Tvi~vtH~l~~~~~-~D~i~-vl~~G-~i~~~g~~~ 963 (1128)
+..+|++..+..++.++.. .. +.|+ ++|.+..+.. ||++. +|++| +++..|+..
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999998876 44 4554 3999999887 99999 99999 887666543
No 257
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.92 E-value=1.3e-10 Score=135.52 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=91.6
Q ss_pred eeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCc-eeecCcEEEEecCCCCCcccHHHHHhcC------CCC
Q 001189 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFG------SAF 210 (1128)
Q Consensus 138 L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~-~~~~~~i~~v~Q~~~l~~~Tv~eni~~g------~~~ 210 (1128)
-++++|+++.|+.++|+|+||||||||+++|+|..+...+.. ..+...++++.|+.. ...++.|+.-+. ...
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~-~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-CEEEEEECCCCCCCGGGSCCS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc-ceEEEEeccccccchhhhhhh
Confidence 579999999999999999999999999999999853211111 113345788877641 112222222211 111
Q ss_pred CHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHc
Q 001189 211 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290 (1128)
Q Consensus 211 ~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~ 290 (1128)
.. .+.+.++.|.. .+..+.- + .+...+||+||+||+++|++|...|.++++ +.+|+... ..++.+..
T Consensus 226 ~~-~fl~~~era~~--lL~vvDl---s--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~ 292 (416)
T 1udx_A 226 GL-EFLRHIARTRV--LLYVLDA---A--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALAD 292 (416)
T ss_dssp CH-HHHHHHTSSSE--EEEEEET---T--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHH
T ss_pred hH-HHHHHHHHHHh--hhEEeCC---c--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHH
Confidence 11 12222221211 0111100 0 122347999999999999999999999999 99998755 33333333
Q ss_pred cc-cCCcEEEEEcc
Q 001189 291 GE-LSGKTRVLVTN 303 (1128)
Q Consensus 291 ~~-~~~~tvilvtH 303 (1128)
.. ..+.+++++|.
T Consensus 293 ~l~~~g~~vi~iSA 306 (416)
T 1udx_A 293 ALAREGLAVLPVSA 306 (416)
T ss_dssp HHHTTTSCEEECCT
T ss_pred HHHhcCCeEEEEEC
Confidence 22 23567777764
No 258
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.91 E-value=4.4e-11 Score=135.58 Aligned_cols=137 Identities=18% Similarity=0.144 Sum_probs=87.1
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC--------CCCCCCcee----e-------------------c----CcEEEE---e
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGEL--------PPVSDASAV----I-------------------R----GTVAYV---P 190 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~--------~~~~g~~~~----~-------------------~----~~i~~v---~ 190 (1128)
++++|+|+||||||||++.|+|.. .|+.|.+.. + + ..++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999987 566664321 0 1 125666 6
Q ss_pred cCCCC-CcccHHHHHhcCCCCCHHHHHHHH-------HHhCcHHHHhcCCCCCcccccC-----CCCCCChHHHHHHHHH
Q 001189 191 QVSWI-FNATVRDNILFGSAFEPARYEKAI-------DVTSLQHDLDLLPGGDVTEIGE-----RGVNISGGQKQRVSMA 257 (1128)
Q Consensus 191 Q~~~l-~~~Tv~eni~~g~~~~~~~~~~~~-------~~~~l~~~~~~l~~g~~t~vg~-----~g~~LSGGQkqRiaLA 257 (1128)
|++.+ ++.+|.||+.++.+ ..+.+.+ +...+... .+.++- .-.+|||||+||+..+
T Consensus 85 q~~~~~~~~~v~E~~~l~~p---~~~~~~~~~~~~~~~~~~l~~~--------l~~vd~~~~~~~~~~ls~g~~Q~~~ad 153 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP---GPIIQTFFSHEVLCQRYLLDGV--------IALVDAVHADEQMNQFTIAQSQVGYAD 153 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH---HHHHHHHHHSHHHHHHEEEEEE--------EEEEETTTHHHHHHHCHHHHHHHHTCS
T ss_pred hcCCCCCCEEEEeCCCCCCH---HHHHHHHhcCccccCeEEECCE--------EEEEEHHHHHHHHhhchHHHHHHHhCC
Confidence 77654 67888888877643 2211111 11111111 111111 1126899999999999
Q ss_pred HHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccch
Q 001189 258 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 308 (1128)
Q Consensus 258 Ral~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l 308 (1128)
++++.+||++ ||| +.+.+.+.. ...+.|++++||+...+
T Consensus 154 ~ill~k~dl~--de~---------~~l~~~l~~-l~~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 154 RILLTKTDVA--GEA---------EKLHERLAR-INARAPVYTVTHGDIDL 192 (318)
T ss_dssp EEEEECTTTC--SCT---------HHHHHHHHH-HCSSSCEEECCSSCCCG
T ss_pred EEEEECcccC--CHH---------HHHHHHHHH-hCCCCeEEEecccCCCH
Confidence 9999999987 888 334433322 23578999999975433
No 259
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.90 E-value=2.1e-09 Score=120.32 Aligned_cols=132 Identities=15% Similarity=0.051 Sum_probs=90.1
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
.++++++.|++. . ++++|+ +|++++++|+||+||||++..|++.+.+..|+|.+.+.|+..-...
T Consensus 78 ~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~--------- 142 (295)
T 1ls1_A 78 VYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR--------- 142 (295)
T ss_dssp HHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH---------
T ss_pred HHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH---------
Confidence 344455555432 1 677887 8999999999999999999999999999999999988776431100
Q ss_pred cCCCccccccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 001189 825 PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 904 (1128)
Q Consensus 825 ~Q~~~lf~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlL 904 (1128)
+ .+....+.. |++-.. .+......+.+|.+|+++...+++++|+
T Consensus 143 ------------~-----------ql~~~~~~~-----------~l~~~~--~~~~~~p~~l~~~~l~~~~~~~~D~vii 186 (295)
T 1ls1_A 143 ------------E-----------QLRLLGEKV-----------GVPVLE--VMDGESPESIRRRVEEKARLEARDLILV 186 (295)
T ss_dssp ------------H-----------HHHHHHHHH-----------TCCEEE--CCTTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred ------------H-----------HHHHhcccC-----------CeEEEE--cCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 0 000001110 111110 0111234456788999998899999999
Q ss_pred ecc-ccCCCHHHHHHHHHHHHHHc
Q 001189 905 DEA-TAAVDVRTDALIQKTIREEF 927 (1128)
Q Consensus 905 DEp-Ts~lD~~t~~~i~~~l~~~~ 927 (1128)
||| ++++|......+.+..+...
T Consensus 187 Dtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 187 DTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred eCCCCccccHHHHHHHHHHhhhcC
Confidence 999 99999988888888776643
No 260
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.88 E-value=1.2e-11 Score=148.37 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=99.6
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee-----e----cCcEEEEecCCCCC-cccHHHHHh
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----I----RGTVAYVPQVSWIF-NATVRDNIL 205 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~-----~----~~~i~~v~Q~~~l~-~~Tv~eni~ 205 (1128)
.+++++++.+++|+.++|+||||||||||+++|+|+++|+.|.... + ...+++..|..... ..|..+++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 4678899999999999999999999999999999999998754321 1 12366777665422 246776653
Q ss_pred c-----------CCCCCHHHHHHHHHHh--C-----------cHHHH---hcCCCCCccccc-------CCCCCCChHHH
Q 001189 206 F-----------GSAFEPARYEKAIDVT--S-----------LQHDL---DLLPGGDVTEIG-------ERGVNISGGQK 251 (1128)
Q Consensus 206 ~-----------g~~~~~~~~~~~~~~~--~-----------l~~~~---~~l~~g~~t~vg-------~~g~~LSGGQk 251 (1128)
. |.--+.+ ...+++++ + ..+.+ ...+.+....+. .....+|||||
T Consensus 328 ~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp TTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 2 2212222 32333332 1 11111 222222111111 12345899999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEE--EccCccchh
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL--VTNQLHFLS 309 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvil--vtH~~~~l~ 309 (1128)
||.++|. + | +++||+...+.+++.+......++|+++ +||+++.+.
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~ 454 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMA 454 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHH
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHH
Confidence 9987641 2 6 9999998766655544433345789875 899988765
No 261
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.87 E-value=1.3e-10 Score=132.73 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=100.6
Q ss_pred EEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee----------------ecC
Q 001189 121 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 184 (1128)
Q Consensus 121 ~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~----------------~~~ 184 (1128)
+++++++.|.. +.+|+++||++++|++++|+|+||||||||++.|+|.+.|++|.+.. .+.
T Consensus 31 e~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 31 ESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp TCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 34455666642 46899999999999999999999999999999999998877654321 234
Q ss_pred cEEEEecCCCCCc----------c---cHHHHHh-c---CCC----------CCHHHHHHHHHHhCc---------HHHH
Q 001189 185 TVAYVPQVSWIFN----------A---TVRDNIL-F---GSA----------FEPARYEKAIDVTSL---------QHDL 228 (1128)
Q Consensus 185 ~i~~v~Q~~~l~~----------~---Tv~eni~-~---g~~----------~~~~~~~~~~~~~~l---------~~~~ 228 (1128)
+++|++|++.+|. | +++|.+. + +.+ ..+..+. +.+.+ .+.+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~---~~~d~vl~v~d~~~~~~~ 184 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA---DLTDFFLVLMLPGAGDEL 184 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH---TTSSEEEEEECSCC----
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHH---hhCCEEEEEEcCCCcccH
Confidence 5899999987763 2 2333321 0 100 0111110 11100 0000
Q ss_pred h-------cCCCC-Cccccc-CCCCCCChHHHHHHHHHHHHcc------CCCEEEEeCcCCCcCHHHHHHHHHHHHc
Q 001189 229 D-------LLPGG-DVTEIG-ERGVNISGGQKQRVSMARAVYS------NSDVFIFDDPLSALDAHVGRQVFDRCIR 290 (1128)
Q Consensus 229 ~-------~l~~g-~~t~vg-~~g~~LSGGQkqRiaLARal~~------~~~illLDEpts~LD~~~~~~i~~~~~~ 290 (1128)
+ ..+.- ..+.+. .....+|+|++|++..|++++. +|+++. +|++|......+++.+..
T Consensus 185 ~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 185 QGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp --CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 0 00100 001111 0123589999999999999987 688876 999999999999886543
No 262
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.87 E-value=8.2e-10 Score=130.51 Aligned_cols=79 Identities=15% Similarity=0.084 Sum_probs=63.0
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH--------
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-------- 816 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-------- 816 (1128)
.+.++++.. ..+|+++||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~ 82 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGK 82 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGG
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHh
Confidence 455555543 1589999999999 999999999999999999999999999999999999987654331
Q ss_pred hhhceEEEcCCC
Q 001189 817 LRKILGIIPQSP 828 (1128)
Q Consensus 817 ~r~~i~~v~Q~~ 828 (1128)
++..+.++.+++
T Consensus 83 ~~~~~~~~~~~~ 94 (483)
T 3euj_A 83 LKAGVCYAVLET 94 (483)
T ss_dssp SCSSEEEEEEEE
T ss_pred cCCCceEEEEeh
Confidence 223356666665
No 263
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.85 E-value=4.3e-11 Score=139.93 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=77.4
Q ss_pred ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee----------------cCcEEEE---------ec
Q 001189 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------------RGTVAYV---------PQ 191 (1128)
Q Consensus 137 ~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~----------------~~~i~~v---------~Q 191 (1128)
+|+++ + .++|++++|+||||||||||+++|+|+++|.+|.+... +..+++. .|
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 3 37899999999999999999999999998887654321 1224443 38
Q ss_pred CCCCC--c-----ccHHHHHhcCC----------CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 001189 192 VSWIF--N-----ATVRDNILFGS----------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 254 (1128)
Q Consensus 192 ~~~l~--~-----~Tv~eni~~g~----------~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi 254 (1128)
+|.++ . .|+.+++.++. ..+.......+...++.... ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 87652 2 48888886521 11222222234444443321 124799999999
Q ss_pred HHHHHHccCCCEEEE
Q 001189 255 SMARAVYSNSDVFIF 269 (1128)
Q Consensus 255 aLARal~~~~~illL 269 (1128)
|||+|+.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
No 264
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.85 E-value=7.7e-10 Score=116.59 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=57.1
Q ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccc-cHhhccc
Q 001189 765 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLD 840 (1128)
Q Consensus 765 sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~~nl~ 840 (1128)
|+++++|+++||+||||||||||+++|.|++ | .+.++|.++...+....+..++|++|++..|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 5778899999999999999999999999996 3 588898888776655567789999999988765 6666553
No 265
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.84 E-value=6e-09 Score=121.11 Aligned_cols=150 Identities=16% Similarity=0.238 Sum_probs=86.7
Q ss_pred EeeCCCEEEEEcCCCccHHHHHH--HHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLIS--AMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 221 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~--~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 221 (1128)
-|++|++++|+||+|||||||++ ++.+..+++.|+. .+.+.|+.-+.. ++..++.+..+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~---~~~viyid~E~~---------------~~~~rl~~~a~~ 235 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG---EGKCLYIDTEGT---------------FRPVRLVSIAQR 235 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC---SSEEEEEESSSC---------------CCHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCC---CCcEEEEeCCCc---------------cCHHHHHHHHHH
Confidence 68999999999999999999999 4457776655531 234556554321 223333333344
Q ss_pred hCcHHH--HhcCCCCCcccccCCCCCCCh-HHHHHHHHHHHHc--cCCCEEEEeCcCCCcCHHHH------------HHH
Q 001189 222 TSLQHD--LDLLPGGDVTEIGERGVNISG-GQKQRVSMARAVY--SNSDVFIFDDPLSALDAHVG------------RQV 284 (1128)
Q Consensus 222 ~~l~~~--~~~l~~g~~t~vg~~g~~LSG-GQkqRiaLARal~--~~~~illLDEpts~LD~~~~------------~~i 284 (1128)
.++... ++.+ .+.. ..++ .|.+.+.-++.++ .+|+++++|||++.+|++.. ..+
T Consensus 236 ~gl~~~~vleni------~~~~---~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~i 306 (400)
T 3lda_A 236 FGLDPDDALNNV------AYAR---AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKF 306 (400)
T ss_dssp TTCCHHHHHHTE------EEEE---CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHH
T ss_pred cCCChHhHhhcE------EEec---cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHH
Confidence 443211 1110 0100 1122 3344444444443 46999999999999997533 344
Q ss_pred HHHHHccc-cCCcEEEEEccCcc-------------------chhc-CCEEEEEeCC
Q 001189 285 FDRCIRGE-LSGKTRVLVTNQLH-------------------FLSQ-VDRIILVHEG 320 (1128)
Q Consensus 285 ~~~~~~~~-~~~~tvilvtH~~~-------------------~l~~-~d~i~~l~~G 320 (1128)
+..+.+.. ..|.|+|+|+|... .+.+ +|.++.|+++
T Consensus 307 l~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 307 MRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 44444332 24899999999832 1233 6888888765
No 266
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.82 E-value=1.8e-09 Score=120.82 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=87.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCCCHH
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDA 848 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~~~~ 848 (1128)
++|++++|+|+||+||||++..|++.+.+++| +++.++.+|+. ..+..+++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999998778 13555555552 222222221
Q ss_pred HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc-
Q 001189 849 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF- 927 (1128)
Q Consensus 849 ~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~- 927 (1128)
...+. .|++... ..+ +...+.+++++ ++|+++|+| |+++|+.....+.+..+-..
T Consensus 155 ---~~~~~-----------~gl~~~~-----~~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 155 ---TYAEL-----------LQAPLEV-----CYT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp ---HHHTT-----------TTCCCCB-----CSS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred ---HHHHh-----------cCCCeEe-----cCC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 11111 1211111 012 34456667654 899999999 99999877766665543322
Q ss_pred --CCcEEEEe--ecCchhhhh-cCEEEEEeCCEEEE
Q 001189 928 --KSCTMLII--AHRLNTIID-CDRILLLDSGRVLE 958 (1128)
Q Consensus 928 --~~~Tvi~v--tH~l~~~~~-~D~i~vl~~G~i~~ 958 (1128)
.+.+++++ +|....+.. ++++..+..|.++.
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23345555 898887776 77766566666664
No 267
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.82 E-value=3.5e-09 Score=118.83 Aligned_cols=98 Identities=19% Similarity=0.255 Sum_probs=72.0
Q ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCC
Q 001189 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS 843 (1128)
Q Consensus 764 vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~ 843 (1128)
+++..++|++++|+|+|||||||++..|++.+.+..|+|.+.+.|..+. ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHH-------
Confidence 3455678999999999999999999999999999999999887764320 001
Q ss_pred CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH---HHHHHhccCCCEEEEecccc
Q 001189 844 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL---SLSRALLRRSKILVLDEATA 909 (1128)
Q Consensus 844 ~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl---~lArall~~p~iLlLDEpTs 909 (1128)
+++...++ .. |++. + ...|+|+.|++ ++++++.++|+++|+|||..
T Consensus 149 ----eqL~~~~~---------~~--gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 ----EQLKIWGE---------RV--GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ----HHHHHHHH---------HH--TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ----HHHHHHHH---------Hc--CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11111112 11 2221 1 24689999999 99999999999999999974
No 268
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=9e-09 Score=118.07 Aligned_cols=128 Identities=11% Similarity=0.088 Sum_probs=72.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc-CCCCCCCCcee----------ecCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHH
Q 001189 150 LVAIVGGTGEGKTSLISAMLG-ELPPVSDASAV----------IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEK 217 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G-~~~~~~g~~~~----------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~ 217 (1128)
.+.|+||+|+||||++++|+| ++.|..|.... .+..+++++|.+++. +.+- .+. .+.....+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~ 111 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MGN-NDRIVIQE 111 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------CCHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh-----cCC-cchHHHHH
Confidence 389999999999999999999 66776553211 124578888877652 2210 010 11112223
Q ss_pred HHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcE
Q 001189 218 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 297 (1128)
Q Consensus 218 ~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~t 297 (1128)
.++.... ..+ ....+ .||| +..+|+++++|||++ ||+.....+.+.+ .....+.+
T Consensus 112 ~i~~~~~-----~~~--~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~l-e~~~~~~~ 166 (354)
T 1sxj_E 112 LLKEVAQ-----MEQ--VDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTM-EKYSKNIR 166 (354)
T ss_dssp HHHHHTT-----TTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHH-HHSTTTEE
T ss_pred HHHHHHH-----hcc--ccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHH-HhhcCCCE
Confidence 2222111 000 00001 4676 778999999999999 9999988887754 33345789
Q ss_pred EEEEccCccch
Q 001189 298 RVLVTNQLHFL 308 (1128)
Q Consensus 298 vilvtH~~~~l 308 (1128)
+|++||+++.+
T Consensus 167 ~Il~t~~~~~l 177 (354)
T 1sxj_E 167 LIMVCDSMSPI 177 (354)
T ss_dssp EEEEESCSCSS
T ss_pred EEEEeCCHHHH
Confidence 99999998754
No 269
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.75 E-value=8e-09 Score=117.01 Aligned_cols=135 Identities=19% Similarity=0.123 Sum_probs=82.8
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee------------------cCcEEEEecCCCCC-cccHHHHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSWIF-NATVRDNI 204 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~l~-~~Tv~eni 204 (1128)
..++|++++|+|||||||||+++.|+|.++|.+|.+... +-.+.+++|.+.++ ..+++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 447899999999999999999999999999887654321 11366999988776 57999998
Q ss_pred hcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHH
Q 001189 205 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 284 (1128)
Q Consensus 205 ~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i 284 (1128)
.++.. ...... .++. ++... .-.. =.++--.++|++..++++++||.++. .|......-
T Consensus 205 ~~~~~----------~~~d~v-liDt-aG~~~-----~~~~---l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~~~~ 263 (328)
T 3e70_C 205 QHAKA----------RGIDVV-LIDT-AGRSE-----TNRN---LMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQARQ 263 (328)
T ss_dssp HHHHH----------HTCSEE-EEEE-CCSCC-----TTTC---HHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHHHHH
T ss_pred HHHHh----------ccchhh-HHhh-ccchh-----HHHH---HHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHHHHH
Confidence 75310 000000 0111 11000 0000 11222248999999988999995554 444322211
Q ss_pred HHHHHccccCCcEEEEEccC
Q 001189 285 FDRCIRGELSGKTRVLVTNQ 304 (1128)
Q Consensus 285 ~~~~~~~~~~~~tvilvtH~ 304 (1128)
+. ...+.|.|++||-
T Consensus 264 ~~-----~~~~it~iilTKl 278 (328)
T 3e70_C 264 FN-----EAVKIDGIILTKL 278 (328)
T ss_dssp HH-----HHSCCCEEEEECG
T ss_pred HH-----HhcCCCEEEEeCc
Confidence 11 1246899999994
No 270
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.72 E-value=9.2e-10 Score=123.22 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=42.8
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE---CCEecCCCChHHhhhceEEEcCCCcccc-----ccHhhc
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI---DGFDIAKFGLMDLRKILGIIPQSPVLFS-----GTVRFN 838 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~Tv~~n 838 (1128)
++.+|++++|+||||+|||||+|+|.|+..|..|+|.+ +|.+++... ...+..+++++|.|.+.. .|+ +|
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HH
Confidence 45689999999999999999999999999999999999 888876532 122223899999997653 367 77
Q ss_pred c
Q 001189 839 L 839 (1128)
Q Consensus 839 l 839 (1128)
|
T Consensus 247 l 247 (307)
T 1t9h_A 247 L 247 (307)
T ss_dssp H
T ss_pred H
Confidence 7
No 271
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.71 E-value=2e-09 Score=120.98 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=73.9
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ec-CcEEEEecCCCC------CcccHH
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR-GTVAYVPQVSWI------FNATVR 201 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~-~~i~~v~Q~~~l------~~~Tv~ 201 (1128)
+++.+|++++|+|+||||||||+++|+ ..+|.+|.+.. .+ ..+||++|+|.+ ...|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 355679999999999999999999999 99888775432 11 258999999965 25688
Q ss_pred HHH--hcCC------------CC--CHHHHHHHHHHhCcHH-HHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001189 202 DNI--LFGS------------AF--EPARYEKAIDVTSLQH-DLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 258 (1128)
Q Consensus 202 eni--~~g~------------~~--~~~~~~~~~~~~~l~~-~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLAR 258 (1128)
||+ .|+. .. ...++.++++..++.+ ..+..+ ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 4531 11 1245677777777764 344333 369998899999987
No 272
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.71 E-value=5.4e-09 Score=113.22 Aligned_cols=167 Identities=15% Similarity=0.175 Sum_probs=87.9
Q ss_pred Cceeee-eEEEcCCcEEEEECCCCCCHHHHHHHH-hcCCCCCCceEEECCEecCCCChHHhhh---ceEEEcCCCccccc
Q 001189 759 PVLHGL-SFTIPPSDKVGIVGRTGAGKSSMLNTL-FRIVELERGRILIDGFDIAKFGLMDLRK---ILGIIPQSPVLFSG 833 (1128)
Q Consensus 759 ~~l~~v-sl~i~~Ge~v~ivG~~GsGKSTll~~l-~g~~~p~~G~I~i~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~ 833 (1128)
+.|+.+ .--+++|+.++|+||||||||||+..+ .+..+...+.+++++.. +..++++ .+++.+|+....
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~-- 83 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEK-- 83 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHH--
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhC--
Confidence 456666 567899999999999999999996544 55555444555565432 3333322 345555432110
Q ss_pred cHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEeccccCC
Q 001189 834 TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAV 911 (1128)
Q Consensus 834 Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall--~~p~iLlLDEpTs~l 911 (1128)
.++....... .. .+ ..+. .+..+.+. +....+.+..++.++ .+|+++++|++|.-+
T Consensus 84 ---~~l~~~~~~~-~~-------~~------~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 84 ---GMFAMVDAFT-AG-------IG------KSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp ---TSEEEEECST-TT-------TC------C--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGT
T ss_pred ---CcEEEEecch-hh-------cc------cccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhh
Confidence 0111000000 00 00 0000 00000000 112223333444444 479999999999987
Q ss_pred --CHHHHHHHHHHHHHH--cCCcEEEEeecCchh--------hhh-cCEEEEEeC
Q 001189 912 --DVRTDALIQKTIREE--FKSCTMLIIAHRLNT--------IID-CDRILLLDS 953 (1128)
Q Consensus 912 --D~~t~~~i~~~l~~~--~~~~Tvi~vtH~l~~--------~~~-~D~i~vl~~ 953 (1128)
|+...+.+...+.+. ..++|||+++|.... +.+ ||.|+.|+.
T Consensus 142 ~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 142 INKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 543333333333332 257999999998765 334 999999964
No 273
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.69 E-value=1.2e-11 Score=141.44 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=96.0
Q ss_pred EEEEEEeCCCCCCceeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEecCCCChH
Q 001189 747 EDVVLRYRPELPPVLHGLSFTIPPS-------DKVGIVGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLM 815 (1128)
Q Consensus 747 ~~v~~~y~~~~~~~l~~vsl~i~~G-------e~v~ivG~~GsGKSTll~~l~g~~----~p~~G~I~i~g~~i~~~~~~ 815 (1128)
++++..|+. ..+++++++.+++| +.++|+||||+|||||+++|++.+ .|.+|.+..++.++..+...
T Consensus 22 ~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 22 KSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred ccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 344444543 25899999999877 899999999999999999999998 77888887776655332111
Q ss_pred HhhhceEEEcCCCccccccHhhccccCC-CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001189 816 DLRKILGIIPQSPVLFSGTVRFNLDPFS-EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 888 (1128)
Q Consensus 816 ~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~-~~--~----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqr 888 (1128)
..+..|.+++|.+.++. ++.++|.+.- .. . ..... + .+...+. +.++.. .......||+|+|||
T Consensus 100 ~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~--~i~~~l~--~~~li~-at~~~~~Ls~~l~sR 170 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---K--SIRIDIQ--PFTLVG-ATTRSGLLSSPLRSR 170 (334)
T ss_dssp CCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------C--CCEEEE-EESCGGGSCHHHHTT
T ss_pred ccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccc---c--cccccCC--CeEEEE-ecCCcccCCHHHHHh
Confidence 12456999999887764 6666653210 00 0 00000 0 0000111 122221 222334799999999
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHc
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 927 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~ 927 (1128)
++++ .+||+.+...+.+.|++..
T Consensus 171 ~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 171 FGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp CSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred cCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 8654 6778877888888887643
No 274
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.67 E-value=4e-10 Score=120.87 Aligned_cols=128 Identities=17% Similarity=0.202 Sum_probs=90.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEE--------CCEecCC-CChHHhhhceEEEcCCC------cccc
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIV---ELERGRILI--------DGFDIAK-FGLMDLRKILGIIPQSP------VLFS 832 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~---~p~~G~I~i--------~g~~i~~-~~~~~~r~~i~~v~Q~~------~lf~ 832 (1128)
+.+++|+|++||||||+.++|.+.+ .++.|.+.. +|.++.. .....+++.+++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999876 788899887 6777652 34556788999999986 3344
Q ss_pred ccHhhccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhh-cCCCCCChhHHHHHHHHHHhccCCCEEEEecccc
Q 001189 833 GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS-EAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 909 (1128)
Q Consensus 833 ~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~-e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs 909 (1128)
.++.+++. ++++..++..+..++.+.....+..+.+. .+|.-++|+ .++++++.+++++|+.+++.
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 46665543 46677777777777777665444444332 334456665 34556777888888877653
No 275
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.66 E-value=3.8e-09 Score=110.30 Aligned_cols=142 Identities=18% Similarity=0.142 Sum_probs=77.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEecCC--CChHHhhhceEEEcCCCcccc--ccHhh
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVEL-----------ERGRILIDGFDIAK--FGLMDLRKILGIIPQSPVLFS--GTVRF 837 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p-----------~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~--~Tv~~ 837 (1128)
+++|+|+||||||||++.+.|...+ .+|+|.++|.++.- ++....++..++++|...-.. -++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57999999976531 111111222233333211000 01111
Q ss_pred ccccCCCCCHHHHHHHHHHhcHHHHHHHccCCc-chhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHH
Q 001189 838 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGL-DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 916 (1128)
Q Consensus 838 nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gl-dt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~ 916 (1128)
+.+. .+-+.+...++. +. ...+... --.++..- .|..-..+...+|++++.+|+++++| ||++|....
T Consensus 111 ~~~~---~s~~~~~~~~~~--~~---~~~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 111 IAKH---LTYENVERWLKE--LR---DHADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp TTCH---HHHHTHHHHHHH--HH---HHSCTTCEEEEEEECG-GGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred CcCH---HHHHHHHHHHHH--HH---HhcCCCCcEEEEEECc-ccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 1110 000111111111 00 0000000 00111111 12222223478899999999999999 999999999
Q ss_pred HHHHHHHHH
Q 001189 917 ALIQKTIRE 925 (1128)
Q Consensus 917 ~~i~~~l~~ 925 (1128)
..+.+.|.+
T Consensus 180 ~~l~~~l~~ 188 (191)
T 1oix_A 180 EAAFQTILT 188 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888865
No 276
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.65 E-value=8.9e-11 Score=130.46 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=91.9
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++++.+.|.. +.+++++++.+++| ++|+||||+|||||+++|.+... .|.|.++|.++........++.++++
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 34555555642 35899999999999 99999999999999999999885 79999998876554444556667888
Q ss_pred cCCCc-ccc-ccHhhccccCCCC--C-----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 825 PQSPV-LFS-GTVRFNLDPFSEH--S-----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 825 ~Q~~~-lf~-~Tv~~nl~~~~~~--~-----~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+|++. .+. -++.+|++..... . .++..+ .+..+ + ..|||||+||..+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~---------~~~~l-------l----~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ---------TLNQL-------L----VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHH---------HHHHH-------H----HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHH---------HHHHH-------H----HHHhCCCCCCCEEEEEe
Confidence 88764 332 2566666421110 0 111111 11111 1 13899999999999999
Q ss_pred ccCCCEEEEec
Q 001189 896 LRRSKILVLDE 906 (1128)
Q Consensus 896 l~~p~iLlLDE 906 (1128)
..+|++ ||+
T Consensus 185 t~~p~~--ld~ 193 (278)
T 1iy2_A 185 TNRPDI--LDP 193 (278)
T ss_dssp ESCTTS--SCH
T ss_pred cCCchh--CCH
Confidence 999986 454
No 277
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.64 E-value=5.9e-08 Score=111.04 Aligned_cols=143 Identities=22% Similarity=0.249 Sum_probs=83.1
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEecCCCChHHhhhceEEEcCCCccccccHhhccccCCCC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 845 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~~~~~~ 845 (1128)
-+++|+++.|.||+|||||||+..++.......|.+ +++... ..+. ...+++++-+|+ +.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~----- 117 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LL----- 117 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CE-----
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eE-----
Confidence 578999999999999999999888775554444443 333211 0111 011111111111 10
Q ss_pred CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC--CCEEEEeccccCC----------CH
Q 001189 846 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR--SKILVLDEATAAV----------DV 913 (1128)
Q Consensus 846 ~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~--p~iLlLDEpTs~l----------D~ 913 (1128)
+.. ..+. .|.+.++++++++ |+++|+||+++.+ |+
T Consensus 118 ----------------------------i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 118 ----------------------------VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp ----------------------------EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred ----------------------------Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 000 0121 2345678888765 9999999999988 32
Q ss_pred ---HHHHHHHHHHHHH----c-CCcEEEEeecCchh----------------hhh-cCEEEEEeCCEEEEecC
Q 001189 914 ---RTDALIQKTIREE----F-KSCTMLIIAHRLNT----------------IID-CDRILLLDSGRVLEYDT 961 (1128)
Q Consensus 914 ---~t~~~i~~~l~~~----~-~~~Tvi~vtH~l~~----------------~~~-~D~i~vl~~G~i~~~g~ 961 (1128)
...+.+.+.++++ . .++|||+++|-... +.. ||.++.+..+++...|+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1122344444433 1 48999999996431 344 99999998877765554
No 278
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.63 E-value=1.7e-09 Score=128.62 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=92.9
Q ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccc
Q 001189 763 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR--IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD 840 (1128)
Q Consensus 763 ~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g--~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~ 840 (1128)
.+++++.++..+.|.|.|||||||++++|.. ++.++.|++.+.+.|.+......+.. -|+++. +|..|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd-- 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTD-- 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCS--
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecC--
Confidence 4778889999999999999999999999886 66777788988888876543332221 122211 11111
Q ss_pred cCCCCCHHHHHHHHHHhc--H---HHHHHHccCCcchhhhc---CCCCCChhHHHHH----------HHHHHhccCCC-E
Q 001189 841 PFSEHSDADLWEALERAH--L---KDAIRRNSLGLDAQVSE---AGENFSVGQRQLL----------SLSRALLRRSK-I 901 (1128)
Q Consensus 841 ~~~~~~~~~i~~~l~~~~--l---~~~i~~lp~Gldt~v~e---~g~~LSgGqrqrl----------~lArall~~p~-i 901 (1128)
.++..++|+.+. + .+.+.. .|.....+- ....+|+||+|+. ++|+++...|. +
T Consensus 229 ------~~~a~~~L~~~~~EmerR~~ll~~--~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 229 ------MKDAANALRWCVNEMERRYKLMSA--LGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHH--TTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHH--cCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEE
Confidence 111222221110 0 011111 122111100 0113678887652 45677778888 7
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHH----c-CCcEEEEeecCch
Q 001189 902 LVLDEATAAVDVRTDALIQKTIREE----F-KSCTMLIIAHRLN 940 (1128)
Q Consensus 902 LlLDEpTs~lD~~t~~~i~~~l~~~----~-~~~Tvi~vtH~l~ 940 (1128)
+++||++.-+|... ..+.+.|.++ . .|.++|++|||++
T Consensus 301 lvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 88999999888432 3344444322 2 2779999999987
No 279
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.63 E-value=4.9e-09 Score=114.67 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=68.8
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHh---cCCCCCCceEE--------ECCEecC-CCChHHhhhceEEEcCCC------cc
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLF---RIVELERGRIL--------IDGFDIA-KFGLMDLRKILGIIPQSP------VL 830 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~---g~~~p~~G~I~--------i~g~~i~-~~~~~~~r~~i~~v~Q~~------~l 830 (1128)
++|++++|+||+||||||++++|. |+..|++|.|. .+|.++. ......+++.+++++|++ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 9999884 456778899999999754 34
Q ss_pred ccccHhhccccCCCCCHHHHHHHHHHhcHHHHH
Q 001189 831 FSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 863 (1128)
Q Consensus 831 f~~Tv~~nl~~~~~~~~~~i~~~l~~~~l~~~i 863 (1128)
+..++.+|+. ..++......+.....+
T Consensus 105 ~~~~v~~~i~------~~~v~~~~s~~~~~~~v 131 (252)
T 4e22_A 105 EGEDVSNEIR------TETVGNTASQAAAFPRV 131 (252)
T ss_dssp TTEECTTGGG------SHHHHHHHHHHTTSHHH
T ss_pred CCeehhHHHH------HHHHHHHHHHhcccHHH
Confidence 5557777764 23454444444333333
No 280
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.61 E-value=1.2e-09 Score=117.15 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=51.5
Q ss_pred cEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh--------
Q 001189 743 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-------- 814 (1128)
Q Consensus 743 ~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~-------- 814 (1128)
.|+++|+...|.. ++++.+ ++++|+||||||||||+++|.|++.|++|.|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 3788888655421 566666 8999999999999999999999999999999999998844332
Q ss_pred HHhhhceEEEcCC
Q 001189 815 MDLRKILGIIPQS 827 (1128)
Q Consensus 815 ~~~r~~i~~v~Q~ 827 (1128)
...+..+++++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2246679999985
No 281
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.57 E-value=4.8e-08 Score=109.25 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=85.6
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcH
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 225 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~ 225 (1128)
.+|++++++|+||+||||++..|++.+.+..| .+|.++.++++ ..+..|++.. ..+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------~~V~lv~~D~~--r~~a~eqL~~-----------~~~~~g-- 161 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------KKIAFITTDTY--RIAAVEQLKT-----------YAELLQ-- 161 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CCEEEEECCCS--STTHHHHHHH-----------HHTTTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CEEEEEecCcc--cchHHHHHHH-----------HHHhcC--
Confidence 47999999999999999999999999876555 36899999874 3344443321 111111
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccc---cCCcEEEEE-
Q 001189 226 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE---LSGKTRVLV- 301 (1128)
Q Consensus 226 ~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~---~~~~tvilv- 301 (1128)
+|. .. ..+ +..-+.+|+++ .++|++|+| |+++|+.....+.+ +.... ....+++++
T Consensus 162 -----l~~----~~-----~~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~ 221 (296)
T 2px0_A 162 -----APL----EV-----CYT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDE-LKETIPFESSIQSFLVLS 221 (296)
T ss_dssp -----CCC----CB-----CSS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEE
T ss_pred -----CCe----Ee-----cCC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEE
Confidence 110 00 012 34457777764 899999999 89999865544332 22211 122334444
Q ss_pred -ccCccchhc-CCEEEEEeCCeEee
Q 001189 302 -TNQLHFLSQ-VDRIILVHEGMVKE 324 (1128)
Q Consensus 302 -tH~~~~l~~-~d~i~~l~~G~i~~ 324 (1128)
||....+.. ++++..+..+.++.
T Consensus 222 at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 222 ATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp TTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 888766654 56554555565554
No 282
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.56 E-value=2e-10 Score=125.67 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=91.5
Q ss_pred EEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEE
Q 001189 745 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 824 (1128)
Q Consensus 745 ~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 824 (1128)
+++++.+.|.. +.+++++++++++| ++|+||||+|||||+++|.+... .|.|.++|.++........++.++.+
T Consensus 27 ~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (254)
T 1ixz_A 27 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 100 (254)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHH
Confidence 44555555532 35899999999999 99999999999999999999875 79999998776544444455667778
Q ss_pred cCCCc-ccc-ccHhhccccCCC--C-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001189 825 PQSPV-LFS-GTVRFNLDPFSE--H-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 895 (1128)
Q Consensus 825 ~Q~~~-lf~-~Tv~~nl~~~~~--~-----~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAral 895 (1128)
+|+.. .+. -++.++++.... . ..++..+ .+..+. ..|||||+||..+++|+
T Consensus 101 ~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~---------~~~~ll-----------~~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 101 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ---------TLNQLL-----------VEMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHTTSSSEEEEEETHHHHHC---------CHHHHH---------HHHHHH-----------HHHHTCCTTCCEEEEEE
T ss_pred HHHHHhcCCeEEEehhhhhhhcccCccccccchHHHH---------HHHHHH-----------HHHhCCCCCCCEEEEEc
Confidence 87753 222 255566642110 0 0111111 111111 13789999999999999
Q ss_pred ccCCCEEEEeccc
Q 001189 896 LRRSKILVLDEAT 908 (1128)
Q Consensus 896 l~~p~iLlLDEpT 908 (1128)
..+|++ ||++.
T Consensus 161 t~~p~~--ld~~l 171 (254)
T 1ixz_A 161 TNRPDI--LDPAL 171 (254)
T ss_dssp ESCGGG--SCGGG
T ss_pred cCCchh--CCHHH
Confidence 999986 56654
No 283
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.54 E-value=2.2e-08 Score=123.39 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=102.1
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCEecCCCChHHhhhceEEEcCCC---------
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDGFDIAKFGLMDLRKILGIIPQSP--------- 828 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~--------- 828 (1128)
.+++++++.+.+|+.++|+||+|+|||||+++|.+++.+.. |.+.+++.+.... ...++++|+..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 58999999999999999999999999999999999999887 8888888765543 34688887754
Q ss_pred -------------cccc-ccHhhccccCCCCC-HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001189 829 -------------VLFS-GTVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 893 (1128)
Q Consensus 829 -------------~lf~-~Tv~~nl~~~~~~~-~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lAr 893 (1128)
+.+. .++.+|+....... ...+... ......+++.. ++..- .....+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~----~~~~~-~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD----VRHDP-FQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE----ECCCC-C----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce----EEech-hhcCCccccccccccCce
Confidence 1121 13444442110000 0000000 00111111111 11100 111349999999999999
Q ss_pred HhccCCCEEEEeccccCCCHHHHHHHHHHHHH
Q 001189 894 ALLRRSKILVLDEATAAVDVRTDALIQKTIRE 925 (1128)
Q Consensus 894 all~~p~iLlLDEpTs~lD~~t~~~i~~~l~~ 925 (1128)
....++.+|+|||... |++.....+.+.|.+
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 899999999998875
No 284
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.53 E-value=4.6e-08 Score=121.44 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=96.3
Q ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccc--
Q 001189 765 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-- 840 (1128)
Q Consensus 765 sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~-- 840 (1128)
++.+++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.+..+.+.++.+++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 457889999999999999999999999987665 67998 7899999988888899999999999888778888873
Q ss_pred cCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHH
Q 001189 841 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 920 (1128)
Q Consensus 841 ~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~ 920 (1128)
++...-..++..+ +-..+.-++++| |+.++|+.++..+.
T Consensus 82 pG~~~f~~~~~~~----------------------------------------l~~ad~~ilVvD-~~~g~~~qt~~~~~ 120 (665)
T 2dy1_A 82 PGYGDFVGEIRGA----------------------------------------LEAADAALVAVS-AEAGVQVGTERAWT 120 (665)
T ss_dssp CCSGGGHHHHHHH----------------------------------------HHHCSEEEEEEE-TTTCSCHHHHHHHH
T ss_pred CCccchHHHHHHH----------------------------------------HhhcCcEEEEEc-CCcccchhHHHHHH
Confidence 2211000111111 112355688888 99999988885554
Q ss_pred HHHHHHcCCcEEEEeecCchhh
Q 001189 921 KTIREEFKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 921 ~~l~~~~~~~Tvi~vtH~l~~~ 942 (1128)
.+. + .+.++|++.|.++..
T Consensus 121 ~~~-~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 121 VAE-R--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH-H--TTCCEEEEEECGGGC
T ss_pred HHH-H--ccCCEEEEecCCchh
Confidence 443 2 467788888887753
No 285
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.53 E-value=1.8e-10 Score=127.73 Aligned_cols=131 Identities=16% Similarity=0.112 Sum_probs=82.9
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeec-------------CcEEEEecCC-CCC-cccH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------GTVAYVPQVS-WIF-NATV 200 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~-------------~~i~~v~Q~~-~l~-~~Tv 200 (1128)
.+++++++.+++| ++|+||||||||||+++|+|+..+. ...+. ..+++++|.+ ... .-++
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~---~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLN---FISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCE---EEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCC---EEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 4789999999999 9999999999999999999988651 11111 1245555543 221 2344
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCC------
Q 001189 201 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS------ 274 (1128)
Q Consensus 201 ~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts------ 274 (1128)
.|||.......... . .....+. +......|||||+||+.+++|+..+|++| |+|+.
T Consensus 109 ~Deid~~~~~r~~~--~---~~~~~~~-----------~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 109 FDEVDALCPRRSDR--E---TGASVRV-----------VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp EETCTTTCC--------------CTTH-----------HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred eehhhhhhcccCCC--c---chHHHHH-----------HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 44443321100000 0 0000011 11112369999999999999999999975 99874
Q ss_pred ------CcCHHHHHHHHHHHH
Q 001189 275 ------ALDAHVGRQVFDRCI 289 (1128)
Q Consensus 275 ------~LD~~~~~~i~~~~~ 289 (1128)
.-|.+.+..|++.+.
T Consensus 171 ~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHHT
T ss_pred eEEEeCCcCHHHHHHHHHHHH
Confidence 237888888887654
No 286
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.52 E-value=3.4e-08 Score=102.73 Aligned_cols=128 Identities=17% Similarity=0.234 Sum_probs=54.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhh
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVE-------------LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 837 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~ 837 (1128)
|++++|+||||||||||+++|.|+++ |..|++ +|.+....+...++..+ .++..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 666664 66555444444444332 1333333334443
Q ss_pred ccccCCCCCHHHHHHHHHH----------hcHHHHHH-H------------ccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001189 838 NLDPFSEHSDADLWEALER----------AHLKDAIR-R------------NSLGLDAQVSEAGENFSVGQRQLLSLSRA 894 (1128)
Q Consensus 838 nl~~~~~~~~~~i~~~l~~----------~~l~~~i~-~------------lp~Gldt~v~e~g~~LSgGqrqrl~lAra 894 (1128)
|+. + ...+.+.+.++. .++...-. . .+.-+...+..+|..-....+||+.-|+.
T Consensus 76 ~~y--g-~~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~ 152 (186)
T 3a00_A 76 NYY--G-STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQA 152 (186)
T ss_dssp EEE--E-EEHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC---------------------------
T ss_pred eec--c-CcHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 431 1 123445555544 11222111 0 11234444555565555666778887776
Q ss_pred hc-----cCCCEEEEec
Q 001189 895 LL-----RRSKILVLDE 906 (1128)
Q Consensus 895 ll-----~~p~iLlLDE 906 (1128)
-+ +.++.+|..+
T Consensus 153 ~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 153 ELAYAETGAHDKVIVND 169 (186)
T ss_dssp ------CCCCSEEEECS
T ss_pred HHHhhcccCCcEEEECc
Confidence 55 4456665543
No 287
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.49 E-value=4.9e-08 Score=109.48 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=68.4
Q ss_pred eeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHH
Q 001189 141 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID 220 (1128)
Q Consensus 141 isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~ 220 (1128)
+++..++|++++|+|+|||||||++..|++.+.+..+ +|.++..+++ .....++ +....+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~-------kV~lv~~D~~--r~~a~eq-----------L~~~~~ 156 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK-------SVVLAAADTF--RAAAIEQ-----------LKIWGE 156 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-------CEEEEEECTT--CHHHHHH-----------HHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC-------EEEEEccccc--cHHHHHH-----------HHHHHH
Confidence 4556778999999999999999999999999876532 3556665532 2111121 111122
Q ss_pred HhCcHHHHhcCCCCCcccccCCCCCCChHHHHHH---HHHHHHccCCCEEEEeCcCC
Q 001189 221 VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV---SMARAVYSNSDVFIFDDPLS 274 (1128)
Q Consensus 221 ~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRi---aLARal~~~~~illLDEpts 274 (1128)
..++ + .+ ..+|||+.|++ +|++++..++|++|+|+|..
T Consensus 157 ~~gl-------~-----~~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 157 RVGA-------T-----VI----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTC-------E-----EE----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HcCC-------c-----EE----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1111 1 11 24689999999 99999999999999999974
No 288
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.49 E-value=5.9e-10 Score=128.87 Aligned_cols=156 Identities=12% Similarity=0.146 Sum_probs=96.7
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcC------------CCCCCCCceeecC-----------------cEEEEecCCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGE------------LPPVSDASAVIRG-----------------TVAYVPQVSW 194 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~------------~~~~~g~~~~~~~-----------------~i~~v~Q~~~ 194 (1128)
.+++|..++|+|+||+|||||+++|+|. ..|+.|.. .+.+ ...++.+.|-
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v-~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKV-AVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEE-EECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeee-eeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 5578999999999999999999999993 23443322 1221 1245666665
Q ss_pred CCc-ccHHHHHhcCCCCCHHHHHHHHHHhC-cHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEe
Q 001189 195 IFN-ATVRDNILFGSAFEPARYEKAIDVTS-LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS--DVFIFD 270 (1128)
Q Consensus 195 l~~-~Tv~eni~~g~~~~~~~~~~~~~~~~-l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~--~illLD 270 (1128)
+.. .|..|++ . ..+...++.+. +...++... ......+||+. +| ++.++|
T Consensus 95 l~~~~s~~e~L------~-~~fl~~ir~~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di~ild 148 (392)
T 1ni3_A 95 LTKGASTGVGL------G-NAFLSHVRAVDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDLSIIV 148 (392)
T ss_dssp GCCCCCSSSSS------C-HHHHHHHTTCSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHHHHHH
T ss_pred cccCCcHHHHH------H-HHHHHHHHHHHHHHHHHhccc-------cceeeeecccc------------Ccchhhhhch
Confidence 542 2322221 1 12222222221 111112111 11223456653 88 999999
Q ss_pred CcCCCcCHHHHHHHHHHHHcc-ccCCcEEEEEccCccchhc-CCEEE-EEeCC-eEeeecCh
Q 001189 271 DPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQ-VDRII-LVHEG-MVKEEGTF 328 (1128)
Q Consensus 271 Epts~LD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~-~d~i~-~l~~G-~i~~~g~~ 328 (1128)
||++.+|+...+..++.+... ...|+|+ ++|....+.. ||++. +|++| +++..|+.
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 999999999988888765544 4446664 3998877654 79998 89999 88766654
No 289
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.49 E-value=2.7e-07 Score=109.65 Aligned_cols=177 Identities=11% Similarity=0.123 Sum_probs=107.3
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEecCCCChHHhhhce-EEEcCCCccccccHh
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-RILIDGFDIAKFGLMDLRKIL-GIIPQSPVLFSGTVR 836 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~lf~~Tv~ 836 (1128)
+.|+++...+++|+.+.|.|++|+|||||+..+++...+..| .|.+.+.+ .+..++++++ +....-+. ..++
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~~---~~l~ 264 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNINA---QNLR 264 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCCH---HHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCCH---HHHh
Confidence 478888888999999999999999999999999988776555 56555432 3445554432 11000000 0111
Q ss_pred hccccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEeccccCCCH-
Q 001189 837 FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDV- 913 (1128)
Q Consensus 837 ~nl~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall--~~p~iLlLDEpTs~lD~- 913 (1128)
. +..++++.....+. .+.+...| -.+.+ ...+|.+|.+ ..+|.+. .+|+++++|+++.-.+.
T Consensus 265 ~-----g~l~~~~~~~~~~a---~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~ 329 (454)
T 2r6a_A 265 T-----GKLTPEDWGKLTMA---MGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSG 329 (454)
T ss_dssp T-----SCCCHHHHHHHHHH---HHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSC
T ss_pred c-----CCCCHHHHHHHHHH---HHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCC
Confidence 1 12234443322221 11122222 11222 2368999876 5667766 57999999999987743
Q ss_pred -------HHHHHHHHHHHHHc--CCcEEEEeec---------C--ch--------hhhh-cCEEEEEeCCEE
Q 001189 914 -------RTDALIQKTIREEF--KSCTMLIIAH---------R--LN--------TIID-CDRILLLDSGRV 956 (1128)
Q Consensus 914 -------~t~~~i~~~l~~~~--~~~Tvi~vtH---------~--l~--------~~~~-~D~i~vl~~G~i 956 (1128)
.....+.+.|+.+. .+++||+++| + +. .+.. ||.|+.|..++.
T Consensus 330 ~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 330 RSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 22244555565543 3799999999 2 32 3444 999999987654
No 290
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.42 E-value=5.3e-07 Score=100.78 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=83.1
Q ss_pred EEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCccc
Q 001189 120 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 199 (1128)
Q Consensus 120 i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~T 199 (1128)
+.++++++.|+.. . ++++|+ +|++++++|+||+||||++..|+|.+.+..+ +|.++..++.- +.+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~-------~v~l~~~d~~~-~~~ 141 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR-------RPLLVAADTQR-PAA 141 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC-------CEEEEECCSSC-HHH
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-------eEEEecCCccc-HhH
Confidence 4556677777521 2 678888 9999999999999999999999999876533 35566555431 111
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCc-CCCcCH
Q 001189 200 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP-LSALDA 278 (1128)
Q Consensus 200 v~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEp-ts~LD~ 278 (1128)
+ + .+....+..+ +..++.+ ..-.-.+-+|.+|+++...++|++|+|+| ++++|.
T Consensus 142 ~-~-----------ql~~~~~~~~----l~~~~~~---------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~ 196 (295)
T 1ls1_A 142 R-E-----------QLRLLGEKVG----VPVLEVM---------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDE 196 (295)
T ss_dssp H-H-----------HHHHHHHHHT----CCEEECC---------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCH
T ss_pred H-H-----------HHHHhcccCC----eEEEEcC---------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccH
Confidence 1 1 1111111111 1112211 11233456789999998899999999999 999998
Q ss_pred HHHHHHHH
Q 001189 279 HVGRQVFD 286 (1128)
Q Consensus 279 ~~~~~i~~ 286 (1128)
.....+..
T Consensus 197 ~~~~~l~~ 204 (295)
T 1ls1_A 197 PLMGELAR 204 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766654
No 291
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.38 E-value=1.5e-07 Score=98.47 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=30.5
Q ss_pred HHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHH
Q 001189 889 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 925 (1128)
Q Consensus 889 l~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~ 925 (1128)
...|++++.+|+++++| ||++|......+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999988888887765
No 292
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.38 E-value=4.9e-08 Score=109.22 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=42.1
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------ecCcEEEEecCCCCC-----cccHHHH
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGTVAYVPQVSWIF-----NATVRDN 203 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~i~~v~Q~~~l~-----~~Tv~en 203 (1128)
+++.+|++++|+|+||+|||||+|+|+|...|..|.+.. .+..++|++|.|-+. ..|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 567899999999999999999999999999887664331 111269999999764 3578 89
Q ss_pred Hh
Q 001189 204 IL 205 (1128)
Q Consensus 204 i~ 205 (1128)
+.
T Consensus 247 l~ 248 (307)
T 1t9h_A 247 LG 248 (307)
T ss_dssp HG
T ss_pred HH
Confidence 83
No 293
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.37 E-value=5.3e-07 Score=97.37 Aligned_cols=165 Identities=21% Similarity=0.218 Sum_probs=87.5
Q ss_pred Cceeee-eEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHh-cCCCCCHH
Q 001189 136 PTLLNI-NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEPA 213 (1128)
Q Consensus 136 ~~L~~i-sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~~ 213 (1128)
+.|+.+ .-.+++|++++|+|+||||||||+..++....+. | +.+.|+.-+.. ...+.+.+. +|... +
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~------~~v~~~~~e~~--~~~~~~~~~~~g~~~--~ 78 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-G------EPGIYVALEEH--PVQVRQNMAQFGWDV--K 78 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-T------CCEEEEESSSC--HHHHHHHHHTTTCCC--H
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-C------CeEEEEEccCC--HHHHHHHHHHcCCCH--H
Confidence 467776 6689999999999999999999966554433222 1 24666665431 122333332 22221 1
Q ss_pred HHHHHHHHhCcH--H----HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeCcCCCc--CHHHHHH
Q 001189 214 RYEKAIDVTSLQ--H----DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY--SNSDVFIFDDPLSAL--DAHVGRQ 283 (1128)
Q Consensus 214 ~~~~~~~~~~l~--~----~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~--~~~~illLDEpts~L--D~~~~~~ 283 (1128)
.+. ..-.+. + .+...+.... .+-+. +....+....++.++ .+|+++++|+|++.+ |+...+.
T Consensus 79 ~~~---~~~~l~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~ 150 (247)
T 2dr3_A 79 PYE---EKGMFAMVDAFTAGIGKSKEYEK-YIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARS 150 (247)
T ss_dssp HHH---HHTSEEEEECSTTTTCC--CCCS-CBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHH
T ss_pred HHh---hCCcEEEEecchhhccccccccc-ccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHH
Confidence 111 000110 0 0000000000 00011 112333333344443 579999999999988 5543444
Q ss_pred HHHHHHcc-ccCCcEEEEEccCccc---------hhcCCEEEEEeC
Q 001189 284 VFDRCIRG-ELSGKTRVLVTNQLHF---------LSQVDRIILVHE 319 (1128)
Q Consensus 284 i~~~~~~~-~~~~~tvilvtH~~~~---------l~~~d~i~~l~~ 319 (1128)
.+..+.+. ...|.|+|+++|.... ...||.|+.|+.
T Consensus 151 ~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 151 IILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 44444443 2358899999998654 234799999964
No 294
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.35 E-value=5.6e-09 Score=117.72 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=50.3
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEe-------------------eCCCEEEEEcCCCccHHHHHHHHhcCCC--CCCC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDI-------------------PVGSLVAIVGGTGEGKTSLISAMLGELP--PVSD 177 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i-------------------~~G~~~~ivG~~GsGKSTLl~~l~G~~~--~~~g 177 (1128)
.|+++|+++.|. ++++++++.+ ++|++++|+|+||||||||+++|.|++. |++|
T Consensus 37 ~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 37 DLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred ccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 588999999993 6999999988 9999999999999999999999999987 8766
Q ss_pred Cc
Q 001189 178 AS 179 (1128)
Q Consensus 178 ~~ 179 (1128)
.+
T Consensus 112 ~i 113 (308)
T 1sq5_A 112 RV 113 (308)
T ss_dssp CE
T ss_pred eE
Confidence 54
No 295
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.34 E-value=7.3e-09 Score=119.33 Aligned_cols=136 Identities=13% Similarity=0.114 Sum_probs=86.8
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
.+++++++.+++|+.++|+||+|||||||+++|.|. .+|.+..-+ . +...++..++++||.+.++ .++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 589999999999999999999999999999999986 367775511 1 1122333578889987643 223
Q ss_pred cccCCC----C-CHHHHHHHHHHhcHHHHHHH---------ccCCcc-----hhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001189 839 LDPFSE----H-SDADLWEALERAHLKDAIRR---------NSLGLD-----AQVSEAGENFSVGQRQLLSLSRALLRRS 899 (1128)
Q Consensus 839 l~~~~~----~-~~~~i~~~l~~~~l~~~i~~---------lp~Gld-----t~v~e~g~~LSgGqrqrl~lArall~~p 899 (1128)
++.... . ....+. ....+.+.+.. .|..++ -.+......+++|.+||+..+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 332211 0 000110 11122233220 000011 1233445668999999999988889999
Q ss_pred CEEE-Eecccc
Q 001189 900 KILV-LDEATA 909 (1128)
Q Consensus 900 ~iLl-LDEpTs 909 (1128)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
No 296
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.33 E-value=1.3e-07 Score=106.18 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=62.8
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCcee--------------e-cCcEEEEecCCC-------------
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------I-RGTVAYVPQVSW------------- 194 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~--------------~-~~~i~~v~Q~~~------------- 194 (1128)
|++.+|++++|+||||||||||+++|+|+.+|++|.+.. . ...++|++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999998765432 1 125899999985
Q ss_pred ---CC-cccHHHHHhcCCC----CCHHHHHHHHHHhCcH-HHHhcCC
Q 001189 195 ---IF-NATVRDNILFGSA----FEPARYEKAIDVTSLQ-HDLDLLP 232 (1128)
Q Consensus 195 ---l~-~~Tv~eni~~g~~----~~~~~~~~~~~~~~l~-~~~~~l~ 232 (1128)
+| ..|+ +|+.|+.- -...++.++++..+|. +..+..|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 23 5588 99988521 1234677888888884 4455444
No 297
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.32 E-value=3.9e-07 Score=107.73 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=40.5
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCc
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~ 179 (1128)
.+|+++||++++ ++++|+||||||||||+++|+|+++|++|.+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I 60 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLL 60 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence 489999999999 9999999999999999999999999988754
No 298
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.31 E-value=7.1e-09 Score=118.29 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=58.9
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCC-------CEEEEEcCCCccHHHHHHHHhcCC----CCCCCCce-----------
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVG-------SLVAIVGGTGEGKTSLISAMLGEL----PPVSDASA----------- 180 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G-------~~~~ivG~~GsGKSTLl~~l~G~~----~~~~g~~~----------- 180 (1128)
++++..|. .+.+++++++.+++| +.++|+||||+|||||+++|+|++ .+.+|...
T Consensus 22 ~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 22 KSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp SSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred ccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 34444453 235899999999876 899999999999999999999987 45444322
Q ss_pred -eecCcEEEEecCCCCCcccHHHHHh
Q 001189 181 -VIRGTVAYVPQVSWIFNATVRDNIL 205 (1128)
Q Consensus 181 -~~~~~i~~v~Q~~~l~~~Tv~eni~ 205 (1128)
..+..|.+++|.+.+.. ++.|++.
T Consensus 99 ~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HccCCCEEEEcchhhcCH-HHHHHHH
Confidence 12356999999877664 7877774
No 299
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.30 E-value=3.4e-08 Score=121.67 Aligned_cols=147 Identities=15% Similarity=0.142 Sum_probs=90.4
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceee--------cCcEEEEecCC-------------
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------RGTVAYVPQVS------------- 193 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~--------~~~i~~v~Q~~------------- 193 (1128)
..+++++++.+.+|+.++|+||+|+|||||+++|+|.+++..++...+ ...++|+||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~ 126 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAK 126 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhc
Confidence 458899999999999999999999999999999999998866443332 33477887643
Q ss_pred ---------CCC-cccHHHHHhcCCCCCH-HHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 001189 194 ---------WIF-NATVRDNILFGSAFEP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 262 (1128)
Q Consensus 194 ---------~l~-~~Tv~eni~~g~~~~~-~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~ 262 (1128)
|.+ ..++.+|+..++.... ..+... ........+..... -......+|+|++|++..++....
T Consensus 127 ~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~~-----~~~~~g~~~~g~~~~i~~g~~~~a 200 (604)
T 3k1j_A 127 SQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVRH-----DPFQSGGLGTPAHERVEPGMIHRA 200 (604)
T ss_dssp HHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEECC-----CCC----CCCCGGGGEECCHHHHT
T ss_pred cchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEEe-----chhhcCCccccccccccCceeeec
Confidence 222 2233334332211000 000000 00001111111100 011224599999999999999999
Q ss_pred CCCEEEEeCcCCCcCHHHHHHHHHHH
Q 001189 263 NSDVFIFDDPLSALDAHVGRQVFDRC 288 (1128)
Q Consensus 263 ~~~illLDEpts~LD~~~~~~i~~~~ 288 (1128)
++.+|+|||.-. |++.....+.+.+
T Consensus 201 ~~gvL~LDEi~~-l~~~~q~~Ll~~L 225 (604)
T 3k1j_A 201 HKGVLFIDEIAT-LSLKMQQSLLTAM 225 (604)
T ss_dssp TTSEEEETTGGG-SCHHHHHHHHHHH
T ss_pred CCCEEEEechhh-CCHHHHHHHHHHH
Confidence 999999999988 8998877777644
No 300
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.27 E-value=7.5e-07 Score=105.86 Aligned_cols=168 Identities=10% Similarity=0.053 Sum_probs=101.8
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHh---cCC----
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL---FGS---- 208 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~---~g~---- 208 (1128)
+.|+++...+++|+++.|.|++|+|||||+..+++...+..| ..|.|++-+-. ...+.+.+. ++-
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g------~~Vl~~s~E~s--~~~l~~r~~~~~~~~~~~~ 262 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN------ENVAIFSLEMS--AQQLVMRMLCAEGNINAQN 262 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS------CCEEEEESSSC--HHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC------CcEEEEECCCC--HHHHHHHHHHHHcCCCHHH
Confidence 468888888999999999999999999999999887644222 24667665421 112222211 111
Q ss_pred ----CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeCcCCCcCH----
Q 001189 209 ----AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY--SNSDVFIFDDPLSALDA---- 278 (1128)
Q Consensus 209 ----~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~--~~~~illLDEpts~LD~---- 278 (1128)
..+++.+.++.++.+ .+...+ -.+.+ ...+|++|.+ +.+|.+. .+|+++++|+++...+.
T Consensus 263 l~~g~l~~~~~~~~~~a~~---~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~ 332 (454)
T 2r6a_A 263 LRTGKLTPEDWGKLTMAMG---SLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSK 332 (454)
T ss_dssp HHTSCCCHHHHHHHHHHHH---HHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC--
T ss_pred HhcCCCCHHHHHHHHHHHH---HHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCC
Confidence 133333333332221 122111 01212 2478999986 5667666 57999999999998743
Q ss_pred ----HHHHHHHHHHHccc-cCCcEEEEEcc---------C--cc--------chh-cCCEEEEEeCCe
Q 001189 279 ----HVGRQVFDRCIRGE-LSGKTRVLVTN---------Q--LH--------FLS-QVDRIILVHEGM 321 (1128)
Q Consensus 279 ----~~~~~i~~~~~~~~-~~~~tvilvtH---------~--~~--------~l~-~~d~i~~l~~G~ 321 (1128)
.....+...+.... ..+.++|+++| + +. .+. .||.|+.|..+.
T Consensus 333 ~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 333 ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 22234444433322 23789999999 2 32 233 489999998765
No 301
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.26 E-value=6.1e-08 Score=101.93 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=43.3
Q ss_pred eEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCC--CCce------eecCcEEEEecCCCCC-cccHHHHHh
Q 001189 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--DASA------VIRGTVAYVPQVSWIF-NATVRDNIL 205 (1128)
Q Consensus 142 sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~--g~~~------~~~~~i~~v~Q~~~l~-~~Tv~eni~ 205 (1128)
|+++++|++++|+||||||||||+++|+|+++... +... ..+..++|++|++..| ..++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999874211 0000 0123588999988766 446666654
No 302
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.25 E-value=2.1e-07 Score=100.06 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=23.3
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHh-cCCCC
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-GELPP 174 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~-G~~~~ 174 (1128)
....+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35678999999999999999999999999999999 99843
No 303
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.24 E-value=2.5e-07 Score=96.63 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=64.1
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEecCCCChHHhhhceEEEcCCCcccc
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-------------LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 832 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 832 (1128)
+...+|+.++|+||||||||||++.|.+.++ |..|+ ++|++..-++...+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999876 77887 799988888888888865 68888998
Q ss_pred ccHhhccccCCCCCHHHHHHHHH
Q 001189 833 GTVRFNLDPFSEHSDADLWEALE 855 (1128)
Q Consensus 833 ~Tv~~nl~~~~~~~~~~i~~~l~ 855 (1128)
+++..|+ |+ ...+.+.++++
T Consensus 89 ~~~~~n~--YG-t~~~~v~~~l~ 108 (197)
T 3ney_A 89 GSYQGNM--FG-TKFETVHQIHK 108 (197)
T ss_dssp EEETTEE--EE-EEHHHHHHHHH
T ss_pred hhhhcee--cc-cchhhHHHHHh
Confidence 9999985 22 12344555444
No 304
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.19 E-value=2.3e-07 Score=95.84 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=44.9
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEE----------CCEecCCCChHHhhhceEEEcCCCccccccHhh
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILI----------DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 837 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p-~~G~I~i----------~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~ 837 (1128)
.+|++++|+||||||||||+++|.+.+++ ..|.|.. +|.+....+...+++. +.|+.+++..++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999998864 4455533 4444444444444442 34555555555555
Q ss_pred c
Q 001189 838 N 838 (1128)
Q Consensus 838 n 838 (1128)
|
T Consensus 80 n 80 (180)
T 1kgd_A 80 A 80 (180)
T ss_dssp E
T ss_pred c
Confidence 5
No 305
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.18 E-value=1.6e-06 Score=102.81 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=75.3
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
..++++++.+++| +.|+||+|+|||||++++.+.... | ++..+..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~-f~~is~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------P-FFHISGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------C-EEEEEGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------C-eeeCCHHHH
Confidence 3566777777777 889999999999999999984310 0 000111111
Q ss_pred cccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccc----------
Q 001189 839 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT---------- 908 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpT---------- 908 (1128)
+..+ +| .|++++|-.+++|....|.||+|||+.
T Consensus 86 ~~~~-------------------------------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 86 VELF-------------------------------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp TTCC-------------------------------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred HHHH-------------------------------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 1100 01 267888889999999999999999994
Q ss_pred cCCCHHHHHHHHHHHHHH-----cCCcEEEEeecCchhh
Q 001189 909 AAVDVRTDALIQKTIREE-----FKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 909 s~lD~~t~~~i~~~l~~~-----~~~~Tvi~vtH~l~~~ 942 (1128)
++.|.+..+.+.+.+... ..+..||.+||+.+.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 366766666666666543 1356899999998665
No 306
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.18 E-value=3.6e-06 Score=96.18 Aligned_cols=144 Identities=18% Similarity=0.308 Sum_probs=83.3
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 223 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~ 223 (1128)
.+++|+++.|.|++|||||||+..++...... | +.+.|+.-+..+ ++. + .+..+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g------~~vlyi~~E~~~---------------~~~-~---a~~lG 110 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA-G------GIAAFIDAEHAL---------------DPE-Y---AKKLG 110 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T------CCEEEEESSCCC---------------CHH-H---HHHTT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-C------CeEEEEECCCCc---------------CHH-H---HHHcC
Confidence 68899999999999999999988887655332 1 346777665321 111 0 11122
Q ss_pred cHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCcCCCc----------CH---HHHHHH---H
Q 001189 224 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN--SDVFIFDDPLSAL----------DA---HVGRQV---F 285 (1128)
Q Consensus 224 l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~--~~illLDEpts~L----------D~---~~~~~i---~ 285 (1128)
.. .+.+ .+-. ..++. |-+.+++++..+ |+++++|+|++.+ |+ ...+.+ +
T Consensus 111 ~~--~~~l------~i~~---~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l 177 (349)
T 2zr9_A 111 VD--TDSL------LVSQ---PDTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL 177 (349)
T ss_dssp CC--GGGC------EEEC---CSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHH
T ss_pred CC--HHHe------EEec---CCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHH
Confidence 11 0110 0100 11333 345678888755 9999999999998 32 111122 2
Q ss_pred HHHHcc-ccCCcEEEEEccCccc----------------hh-cCCEEEEEeCCeEeeec
Q 001189 286 DRCIRG-ELSGKTRVLVTNQLHF----------------LS-QVDRIILVHEGMVKEEG 326 (1128)
Q Consensus 286 ~~~~~~-~~~~~tvilvtH~~~~----------------l~-~~d~i~~l~~G~i~~~g 326 (1128)
..+... ...+.|+|+++|-..- +. .||.++.++.+++...|
T Consensus 178 ~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 178 RKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp HHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred HHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 222211 2348899999996541 33 36888888777655444
No 307
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.14 E-value=6.5e-07 Score=92.28 Aligned_cols=38 Identities=32% Similarity=0.453 Sum_probs=34.0
Q ss_pred eeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 139 ~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
+++++++.+| +++|+|+||||||||+++|.+.+.+..+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6889999999 9999999999999999999998766543
No 308
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.13 E-value=5.7e-08 Score=103.96 Aligned_cols=115 Identities=19% Similarity=0.151 Sum_probs=73.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCC---CCCCCCcee---------------------ecCcEEEEecCC------CCCc
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGEL---PPVSDASAV---------------------IRGTVAYVPQVS------WIFN 197 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~---~~~~g~~~~---------------------~~~~i~~v~Q~~------~l~~ 197 (1128)
+.+++|+|++||||||++++|++.+ .++.|.... ++..+++++|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999866 344332211 223467787765 3355
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHhCcHHHHhcCCCCCcccc-cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC
Q 001189 198 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI-GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 273 (1128)
Q Consensus 198 ~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~v-g~~g~~LSGGQkqRiaLARal~~~~~illLDEpt 273 (1128)
.++.+++. .+++..++..+...+.+.....+..+.+ .++|.-++|+ .++++++.+++++++.++.
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 67777763 3455566666666655543322222222 2346667776 4566778889998887764
No 309
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.11 E-value=3.4e-07 Score=96.24 Aligned_cols=60 Identities=17% Similarity=0.120 Sum_probs=42.8
Q ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCc
Q 001189 765 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV 829 (1128)
Q Consensus 765 sl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 829 (1128)
.++.++|++++|+|+|||||||++++|.+.+ |.+.++|.++... ....+..+++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 3566889999999999999999999999987 8999998776431 1112234677777643
No 310
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.11 E-value=6.5e-07 Score=106.56 Aligned_cols=156 Identities=13% Similarity=0.088 Sum_probs=79.9
Q ss_pred eeeEEeeCCCEEEEEcCCCccHHHHHHHHhc--CCCCCCCCcee--ecCc-EEE--EecCCCCCcccHHHHHhcCCCCCH
Q 001189 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDASAV--IRGT-VAY--VPQVSWIFNATVRDNILFGSAFEP 212 (1128)
Q Consensus 140 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G--~~~~~~g~~~~--~~~~-i~~--v~Q~~~l~~~Tv~eni~~g~~~~~ 212 (1128)
-+++++.++..+.|.|.+||||||+++.|.. .+.+..+.... +..+ +.+ ...-|++.. +|. .+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~-~Vv--------td~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLT-EVV--------TDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSS-SCB--------CSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccc-eee--------cCH
Confidence 4788899999999999999999999999876 33333332211 1100 000 000112110 111 112
Q ss_pred HHHHHHHHHhC--cH---HHHhcCCCCCcccccC---CCCCCChHHHHHH----------HHHHHHccCCC-EEEEeCcC
Q 001189 213 ARYEKAIDVTS--LQ---HDLDLLPGGDVTEIGE---RGVNISGGQKQRV----------SMARAVYSNSD-VFIFDDPL 273 (1128)
Q Consensus 213 ~~~~~~~~~~~--l~---~~~~~l~~g~~t~vg~---~g~~LSGGQkqRi----------aLARal~~~~~-illLDEpt 273 (1128)
++..++++++. +. +.+... |....-+. ....+||||+||. ++|+++...|. ++++||++
T Consensus 230 ~~a~~~L~~~~~EmerR~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~ 307 (512)
T 2ius_A 230 KDAANALRWCVNEMERRYKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFA 307 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHH
Confidence 22222222110 00 111111 10000000 0124788887752 35677788898 78899999
Q ss_pred CCcCHHH--HHHHHHHHHcc-ccCCcEEEEEccCcc
Q 001189 274 SALDAHV--GRQVFDRCIRG-ELSGKTRVLVTNQLH 306 (1128)
Q Consensus 274 s~LD~~~--~~~i~~~~~~~-~~~~~tvilvtH~~~ 306 (1128)
+.+|... ...++..+.+. ...|.++|++||++.
T Consensus 308 ~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 308 DLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 9887432 22223333222 234889999999987
No 311
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.11 E-value=7.5e-07 Score=93.54 Aligned_cols=51 Identities=18% Similarity=0.368 Sum_probs=45.2
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE--EECCEecC
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI--LIDGFDIA 810 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I--~i~g~~i~ 810 (1128)
.+.+..++..++|++++|+|||||||||++++|.+.+. ..|.+ .+||.++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 57788888899999999999999999999999999987 78988 88876553
No 312
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.11 E-value=1.3e-06 Score=100.50 Aligned_cols=143 Identities=23% Similarity=0.224 Sum_probs=81.8
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCC-----------CCCceEEECCEecCCCChHHhhhceEEEcCCCcc----ccccHhh
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVE-----------LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL----FSGTVRF 837 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~-----------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l----f~~Tv~~ 837 (1128)
+++|+|++|||||||++.|.|... |..|.|.++|.++. +....|++.|.|.- |..|..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 399999999999999999999865 67799999997652 22345666654421 2222221
Q ss_pred -----cccc-CC-CCCHHHHHHHHHHhcHHHHHHHcc-CCc-chhhhcCCCCCChhHHHHHHHH----HHh-ccCCCEEE
Q 001189 838 -----NLDP-FS-EHSDADLWEALERAHLKDAIRRNS-LGL-DAQVSEAGENFSVGQRQLLSLS----RAL-LRRSKILV 903 (1128)
Q Consensus 838 -----nl~~-~~-~~~~~~i~~~l~~~~l~~~i~~lp-~Gl-dt~v~e~g~~LSgGqrqrl~lA----ral-l~~p~iLl 903 (1128)
.+.+ ++ ...+.+..+.++. ..+.+..+. .+. --.+......+|+|++|++.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 1111 11 1111111111111 122222221 111 1122344455788888888877 665 444454
Q ss_pred EeccccCCCHHHHHHHHHHHHHHc
Q 001189 904 LDEATAAVDVRTDALIQKTIREEF 927 (1128)
Q Consensus 904 LDEpTs~lD~~t~~~i~~~l~~~~ 927 (1128)
+|||++|......+.+.|.+..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999999888888887643
No 313
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.09 E-value=2.8e-07 Score=100.36 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=35.9
Q ss_pred cEEEEEE-EEEeCCCCCCceeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 743 SIKFEDV-VLRYRPELPPVLHGLSFTIPP---SDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 743 ~i~~~~v-~~~y~~~~~~~l~~vsl~i~~---Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.++++|+ +++|.. ..++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 24799999999999 9999999999999999999999865
No 314
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.08 E-value=1e-06 Score=92.55 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=40.0
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCcc
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL 830 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 830 (1128)
++|++|++++|+|||||||||++++|.+.+.|+.| +.+ +....... ...+..++|++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDA 62 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHH
Confidence 46889999999999999999999999999977655 222 22222111 1112346777776543
No 315
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.07 E-value=5.7e-06 Score=98.08 Aligned_cols=114 Identities=22% Similarity=0.290 Sum_probs=73.8
Q ss_pred ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001189 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 216 (1128)
Q Consensus 137 ~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 216 (1128)
.++++++.+++| +.|+||+|+|||||+++++++... .+-++.- .+.
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------~f~~is~---------~~~------------- 85 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------PFFHISG---------SDF------------- 85 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------CEEEEEG---------GGT-------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------CeeeCCH---------HHH-------------
Confidence 566777778888 889999999999999999996521 1111110 000
Q ss_pred HHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC----------CCcCHHHHHHHHH
Q 001189 217 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL----------SALDAHVGRQVFD 286 (1128)
Q Consensus 217 ~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt----------s~LD~~~~~~i~~ 286 (1128)
...+ +| .|++++|-.+++|....|.|+++||+- ++.|.+..+.+.+
T Consensus 86 -----------~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~ 141 (476)
T 2ce7_A 86 -----------VELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ 141 (476)
T ss_dssp -----------TTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH
T ss_pred -----------HHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH
Confidence 0000 11 278899999999999999999999994 3566654444433
Q ss_pred HHHcc-----ccCCcEEEEEccCccchh
Q 001189 287 RCIRG-----ELSGKTRVLVTNQLHFLS 309 (1128)
Q Consensus 287 ~~~~~-----~~~~~tvilvtH~~~~l~ 309 (1128)
++.. ...+..+|.+||+++.++
T Consensus 142 -LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 142 -LLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp -HHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred -HHHHHhccCCCCCEEEEEecCChhhhc
Confidence 3321 124678899999987654
No 316
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.06 E-value=1.2e-07 Score=112.97 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=93.3
Q ss_pred EEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEc
Q 001189 746 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 825 (1128)
Q Consensus 746 ~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 825 (1128)
++++...|.. +.+++++++.+++| +.|+||+|+|||||+++|.+... .|.|.++|.++........++++..++
T Consensus 43 l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lf 116 (499)
T 2dhr_A 43 LKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 116 (499)
T ss_dssp HHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHT
T ss_pred HHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHH
Confidence 4444444432 35789999999999 99999999999999999999875 789999998876654445556677788
Q ss_pred CCCc-cccc-cHhhccccCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001189 826 QSPV-LFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 896 (1128)
Q Consensus 826 Q~~~-lf~~-Tv~~nl~~~~~~-------~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall 896 (1128)
|... .... .+-++++..... ..++..+.+ ..++. .||||++|+..+++|..
T Consensus 117 q~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 117 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp TTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECC
T ss_pred HHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEec
Confidence 8764 2222 455666533211 112222221 11221 27888999999999999
Q ss_pred cCCCEEEEecccc
Q 001189 897 RRSKILVLDEATA 909 (1128)
Q Consensus 897 ~~p~iLlLDEpTs 909 (1128)
++|++ ||||.-
T Consensus 177 n~p~~--LD~aLl 187 (499)
T 2dhr_A 177 NRPDI--LDPALL 187 (499)
T ss_dssp SCGGG--SCTTTS
T ss_pred CChhh--cCcccc
Confidence 99987 898875
No 317
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.06 E-value=8.5e-07 Score=100.13 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=54.9
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHh-----hhceEEE-cCC
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDL-----RKILGII-PQS 827 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~-----r~~i~~v-~Q~ 827 (1128)
++++++|++++|++++|+|+||+||||++..|++.+.+..|+|.+.+.|+..... ..+ +..+.++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3467888899999999999999999999999999999999999999888765331 223 4567888 554
No 318
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.06 E-value=1.1e-06 Score=92.70 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=39.3
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccc
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG 833 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 833 (1128)
=++++|++++|+|++||||||+.+.|.+.++ .+.+++||+.++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 3578899999999999999999999999864 37889999988865
No 319
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.03 E-value=4.3e-07 Score=98.82 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=36.1
Q ss_pred CcEEEEeE-EEEeCCCCCCCceeeeeEEeeC---CCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 118 PAISIRNG-YFSWDSKAERPTLLNINLDIPV---GSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 118 ~~i~~~~~-~f~~~~~~~~~~L~~isl~i~~---G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+.++++|+ +|+|. +++++|+++||++++ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36899999 99993 235799999999999 9999999999999999999999865
No 320
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.01 E-value=2.6e-06 Score=89.68 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=45.4
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhh---hhcCEEEEEe
Q 001189 881 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI---IDCDRILLLD 952 (1128)
Q Consensus 881 LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~---~~~D~i~vl~ 952 (1128)
.+.|+.+|..+++.+..+|+.+-.+ ++.++|...+.+.+.+... .+.++|+.+|.+.+. ..||++++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4678999999999998888654333 4456777777777766543 356888888987764 3499998885
No 321
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.00 E-value=7.5e-07 Score=92.44 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999987
No 322
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.98 E-value=6.1e-06 Score=94.90 Aligned_cols=40 Identities=33% Similarity=0.582 Sum_probs=30.7
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhc--CCCCCCC
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSD 177 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G--~~~~~~g 177 (1128)
..+|++++++++ .++|+|++|||||||++.|+| ++++..|
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~ 65 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCC
Confidence 358999999999 999999999999999999999 4555444
No 323
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.98 E-value=6.4e-06 Score=103.91 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=53.6
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEecccc-CCCHHHHHHHHHHHHHHcCC-cEEEE-eecCchhhhh-cC
Q 001189 880 NFSVGQRQLLSLSRALLRRSKILVLDEATA-AVDVRTDALIQKTIREEFKS-CTMLI-IAHRLNTIID-CD 946 (1128)
Q Consensus 880 ~LSgGqrqrl~lArall~~p~iLlLDEpTs-~lD~~t~~~i~~~l~~~~~~-~Tvi~-vtH~l~~~~~-~D 946 (1128)
-+|.|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+....++ +++++ .||+.+.+.. ++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 378999999999999999999999999997 99988776666666665554 56665 5898877665 44
No 324
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.96 E-value=8.3e-06 Score=93.02 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=43.7
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCEecCCCChHHhhhceEEEcCCC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-LIDGFDIAKFGLMDLRKILGIIPQSP 828 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~ 828 (1128)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++..... ....+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhh
Confidence 478999999999999999999999999888777765 666543221 22345566665543
No 325
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.96 E-value=1.6e-06 Score=89.28 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=49.1
Q ss_pred ce--eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE--ecCCCChH----HhhhceEEEcCCCc
Q 001189 760 VL--HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF--DIAKFGLM----DLRKILGIIPQSPV 829 (1128)
Q Consensus 760 ~l--~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~--~i~~~~~~----~~r~~i~~v~Q~~~ 829 (1128)
.+ +++++++.+| +++|+||||||||||+.+|.+++.+..|.....+. ++-..+.. ..+..|.+++|+|.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 45 7889999999 99999999999999999999998887765433221 11111100 13456888988863
No 326
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.95 E-value=6.6e-06 Score=103.78 Aligned_cols=146 Identities=15% Similarity=0.135 Sum_probs=84.4
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCC-CCcccHHHHHhcCCCCCHHHHHHHHHHh
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW-IFNATVRDNILFGSAFEPARYEKAIDVT 222 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~-l~~~Tv~eni~~g~~~~~~~~~~~~~~~ 222 (1128)
.+..|+.+.|+||+||||||++.++++...+..+. ...+.++ | |. .....+.+ ++.+..
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~----g~~ilvl-~-P~r~La~q~~~--------------~l~~~~ 164 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE----NTQVACT-Q-PRRVAAMSVAQ--------------RVAEEM 164 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGG----TCEEEEE-E-SCHHHHHHHHH--------------HHHHHT
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCC----CceEEec-C-chHHHHHHHHH--------------HHHHHh
Confidence 35678999999999999999999887765443220 0113222 2 11 00001111 111111
Q ss_pred CcH--HHHhc-CCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCC-CcCHHHHHHHHHHHHccccCCcEE
Q 001189 223 SLQ--HDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCIRGELSGKTR 298 (1128)
Q Consensus 223 ~l~--~~~~~-l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts-~LD~~~~~~i~~~~~~~~~~~~tv 298 (1128)
+.. ..+.. ........-+.+..-+|+|+.+|..++++++.+++++|+|||.. +||......++..+.......+++
T Consensus 165 ~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iI 244 (773)
T 2xau_A 165 DVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKII 244 (773)
T ss_dssp TCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEE
Confidence 100 00000 00000000112234589999999999999999999999999997 899876666666554333345677
Q ss_pred EE-EccCccchh
Q 001189 299 VL-VTNQLHFLS 309 (1128)
Q Consensus 299 il-vtH~~~~l~ 309 (1128)
++ +||+.+.+.
T Consensus 245 l~SAT~~~~~l~ 256 (773)
T 2xau_A 245 IMSATLDAEKFQ 256 (773)
T ss_dssp EEESCSCCHHHH
T ss_pred EEeccccHHHHH
Confidence 77 589876554
No 327
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=3.6e-06 Score=88.22 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=24.9
Q ss_pred EeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 128 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 128 ~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+|++++..+.++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455556678999999999999999999999999999999999865
No 328
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.89 E-value=8.4e-06 Score=84.66 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=32.5
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHc
Q 001189 252 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290 (1128)
Q Consensus 252 qRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~ 290 (1128)
+++.+||+++.+|+++++| ||++|....+.+++.+.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999987643
No 329
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.89 E-value=2.6e-05 Score=89.48 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEe-ccccCCCHHHHHHHHHHHHHHcCCcEEEEee--cCch
Q 001189 879 ENFSVGQRQLLSLSRALLRRSKILVLD-EATAAVDVRTDALIQKTIREEFKSCTMLIIA--HRLN 940 (1128)
Q Consensus 879 ~~LSgGqrqrl~lArall~~p~iLlLD-EpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vt--H~l~ 940 (1128)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...+..+|+|. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 358999998876 55555667788999 9999999998888888777765577888888 7754
No 330
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.86 E-value=8.1e-07 Score=95.08 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=39.8
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCc
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 179 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~ 179 (1128)
.++++|+...+. . +|++.+ ++++|+||||||||||+++|+|.+.|++|.+
T Consensus 9 ~l~l~~~~~~~~---------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i 58 (227)
T 1qhl_A 9 SLTLINWNGFFA---------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL 58 (227)
T ss_dssp EEEEEEETTEEE---------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred EEEEEeeecccC---------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence 367777755442 1 566666 8999999999999999999999999987743
No 331
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.86 E-value=3e-05 Score=90.61 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=35.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 809 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i 809 (1128)
++.+++++|++||||||++..|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999998888888766654
No 332
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.83 E-value=2.4e-05 Score=89.99 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=35.6
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCE
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR--IVELERGRILIDGF 807 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g--~~~p~~G~I~i~g~ 807 (1128)
.+|++++++++ .|+|||++|||||||++.|.| ++++.+|.+...+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 58999999998 999999999999999999999 66777777654443
No 333
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.82 E-value=8.1e-07 Score=97.00 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=46.0
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHh---cCCCCCCCCce---------------------eecCcEEEEecC------CCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAML---GELPPVSDASA---------------------VIRGTVAYVPQV------SWI 195 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~---G~~~~~~g~~~---------------------~~~~~i~~v~Q~------~~l 195 (1128)
++|++++|+|||||||||++++|+ |+..+++|... .++..+++++|. .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 98877665432 122357888864 345
Q ss_pred CcccHHHHHh
Q 001189 196 FNATVRDNIL 205 (1128)
Q Consensus 196 ~~~Tv~eni~ 205 (1128)
+..++.+||.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 6778888865
No 334
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.80 E-value=2e-06 Score=92.46 Aligned_cols=62 Identities=24% Similarity=0.219 Sum_probs=45.6
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCC------ChHH----hhhceEEEcCCCccc
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF------GLMD----LRKILGIIPQSPVLF 831 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~------~~~~----~r~~i~~v~Q~~~lf 831 (1128)
.+.++|++++|+|+|||||||++++|.+. .|+|.+.+.+.... .... .++.+++++|.+.++
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 86 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 86 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence 34578999999999999999999999998 78899998775421 1111 134566777766544
No 335
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.77 E-value=5.4e-06 Score=87.61 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=27.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVEL 797 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p 797 (1128)
++|+.++|+||||||||||++.|.+.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 336
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.77 E-value=4.6e-05 Score=87.48 Aligned_cols=119 Identities=17% Similarity=0.107 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCCce-eecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHH
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASA-VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 226 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~-~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~ 226 (1128)
.-.++++|++|+|||||++.|+|......+... ...-.++.++++..- ..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------------------~~--- 217 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFR--------------------------YQ--- 217 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEE--------------------------EE---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCce--------------------------EE---
Confidence 348999999999999999999987521111000 001123333332100 00
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe-CcCCCcCHHHHHHHHHHHHccccCCcEEEEEc
Q 001189 227 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD-DPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 302 (1128)
Q Consensus 227 ~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLD-Epts~LD~~~~~~i~~~~~~~~~~~~tvilvt 302 (1128)
+-..|+..+ .....+|+|++|++. +.+...++-++++| ++.+++|......++..+.... .++.+|+|.
T Consensus 218 -l~Dt~G~~~----~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~ 287 (357)
T 2e87_A 218 -IIDTPGLLD----RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVI 287 (357)
T ss_dssp -EEECTTTSS----SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred -EEeCCCccc----cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEE
Confidence 001122111 123468999999887 55555677788999 9999999988777776554322 267788888
No 337
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.70 E-value=6.9e-07 Score=100.56 Aligned_cols=126 Identities=12% Similarity=0.154 Sum_probs=72.7
Q ss_pred CceeeeeEEeeCCC------EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHh----
Q 001189 136 PTLLNINLDIPVGS------LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL---- 205 (1128)
Q Consensus 136 ~~L~~isl~i~~G~------~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~---- 205 (1128)
..|++++..+.+++ +++|+|+||||||||+++|.+++.+..+ .+.+++++++.+.......+...
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~-----~~~v~~i~~D~f~~~~~~l~~~~~~~~ 148 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPD-----HPNVEVITTDGFLYSNAKLEKQGLMKR 148 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGGGGBCCHHHHHHTTCGGG
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCeEEEEeecccccchhhhhhHHHHhh
Confidence 35556666665555 8999999999999999999998864211 23589999998776554444321
Q ss_pred cCC--CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCH
Q 001189 206 FGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278 (1128)
Q Consensus 206 ~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~ 278 (1128)
+|. .++.+.+.+.++. +..|..+ +.- -..|-+..+|+.-+......|+|+|+|-+..-.|.
T Consensus 149 ~g~P~~~D~~~l~~~L~~---------L~~g~~~-v~~--P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 149 KGFPESYDMPSLLRVLNA---------IKSGQRN-VRI--PVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp TTSGGGBCHHHHHHHHHH---------HHTTCSS-EEE--EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ccCcccccHHHHHHHHHh---------hhccccc-ccc--chhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 232 2344444443322 2122200 000 01222222333222344568999999998875554
No 338
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.70 E-value=4e-05 Score=89.41 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=86.5
Q ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-hhhceEEEcCCCccccccHhhccc
Q 001189 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILGIIPQSPVLFSGTVRFNLD 840 (1128)
Q Consensus 762 ~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~~Tv~~nl~ 840 (1128)
++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+......+ ++.. .-+.|++
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~ 155 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVP 155 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-------------cccCCcc
Confidence 567777 89999999999999999999999999999999999888876533221 2110 0012333
Q ss_pred cCC---CCCHHHHHHHHHHhcHHHHHHHc-cCCcchhhhcCCCCCC---hhHHHHHHHHHHhccCCCEEEEeccccCCCH
Q 001189 841 PFS---EHSDADLWEALERAHLKDAIRRN-SLGLDAQVSEAGENFS---VGQRQLLSLSRALLRRSKILVLDEATAAVDV 913 (1128)
Q Consensus 841 ~~~---~~~~~~i~~~l~~~~l~~~i~~l-p~Gldt~v~e~g~~LS---gGqrqrl~lArall~~p~iLlLDEpTs~lD~ 913 (1128)
.+. ..+..++. .+.++.+ ..++|..+-+.+..++ ....+...+++++..++-+|++| ++++.|.
T Consensus 156 v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~a 226 (425)
T 2ffh_A 156 VLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEA 226 (425)
T ss_dssp EEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHH
T ss_pred EEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHH
Confidence 221 11223331 1222222 2466665544333343 23566677788776555677788 5666554
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeec
Q 001189 914 RTDALIQKTIREEFKSCTMLIIAH 937 (1128)
Q Consensus 914 ~t~~~i~~~l~~~~~~~Tvi~vtH 937 (1128)
... + +.+.+. -+.+-+++|+
T Consensus 227 v~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 227 LSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HHH--H-HHHHHH-TCCCEEEEES
T ss_pred HHH--H-HHHHhc-CCceEEEEeC
Confidence 422 2 222221 2345666665
No 339
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.69 E-value=3.3e-05 Score=81.15 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccc---hhcCCEEEEEeC
Q 001189 246 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF---LSQVDRIILVHE 319 (1128)
Q Consensus 246 LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~---l~~~d~i~~l~~ 319 (1128)
.++|+.+|..+++.++.+|+.+.++ .+.++|...+.+.+.+.. ..+.++|+.+|.+.. .+.||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~--~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAE--QTAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHT--CCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHh--cCCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 4688999999999998887644332 445677766666553322 135688888887654 356899999864
No 340
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=1.7e-05 Score=83.12 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=24.9
Q ss_pred CCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 758 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 758 ~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.++++||||++++|++++|+|++||||||+.+.|.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36899999999999999999999999999999999776
No 341
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.68 E-value=5.2e-05 Score=85.78 Aligned_cols=127 Identities=16% Similarity=0.167 Sum_probs=77.4
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
+.|+.+.--+++|+.+.|.|++|+|||||+.-++.......+.|.+ ++=
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~-------------------fSl------------ 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV-------------------FSL------------ 82 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE-------------------EES------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE-------------------EeC------------
Confidence 4577776679999999999999999999998887654332233322 110
Q ss_pred cccCCCCCHHHHHHHH----HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCCCHH
Q 001189 839 LDPFSEHSDADLWEAL----ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 914 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l----~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~lD~~ 914 (1128)
+.+.+++..-+ ....+... . . | .||.++.+|+..|...+.+++++|.|+|+..+|
T Consensus 83 -----Ems~~ql~~Rlls~~~~v~~~~l-----------~-~-g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-- 141 (338)
T 4a1f_A 83 -----EMSAEQLALRALSDLTSINMHDL-----------E-S-G-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-- 141 (338)
T ss_dssp -----SSCHHHHHHHHHHHHHCCCHHHH-----------H-H-T-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH--
T ss_pred -----CCCHHHHHHHHHHHhhCCCHHHH-----------h-c-C-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH--
Confidence 11222322211 11111111 1 1 2 699999999999999999999999999875533
Q ss_pred HHHHHHHHHHHHcCCcEEEEeec
Q 001189 915 TDALIQKTIREEFKSCTMLIIAH 937 (1128)
Q Consensus 915 t~~~i~~~l~~~~~~~Tvi~vtH 937 (1128)
.-+...+.+.+...+..+|+|=|
T Consensus 142 ~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEec
Confidence 22222222222222566766643
No 342
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.67 E-value=1.8e-05 Score=82.95 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=29.1
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
+++++|++++|+|+|||||||++++|.+.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999866433
No 343
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.61 E-value=1.5e-05 Score=83.71 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=39.7
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCC
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG 813 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~ 813 (1128)
.++|++++|+|++||||||+++.|.+.+.+..|.|.+.+.|....+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 5679999999999999999999999999988999988776654443
No 344
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.61 E-value=1.9e-05 Score=89.35 Aligned_cols=126 Identities=20% Similarity=0.194 Sum_probs=79.9
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 215 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~ 215 (1128)
+-|+.+.-.+++|+++.|.|++|+|||||+.-++..... .| ..|.|++=+ .+.+++
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g------~~Vl~fSlE-----------------ms~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DD------RGVAVFSLE-----------------MSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TT------CEEEEEESS-----------------SCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------CeEEEEeCC-----------------CCHHHH
Confidence 457776668999999999999999999999888765422 11 246665432 222222
Q ss_pred H-HHH-HHhCc--HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHcc
Q 001189 216 E-KAI-DVTSL--QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 291 (1128)
Q Consensus 216 ~-~~~-~~~~l--~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~~ 291 (1128)
. +.+ ..+++ ..... ..||+++++|++.|...+.++++++.|+|...+| ..+.....+..
T Consensus 90 ~~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--~i~~~ir~l~~- 152 (338)
T 4a1f_A 90 ALRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--QIRLQLRKLKS- 152 (338)
T ss_dssp HHHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH--HHHHHHHHHHH-
T ss_pred HHHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH--HHHHHHHHHHH-
Confidence 2 111 11222 11111 2699999999999999999999999999875544 22222222221
Q ss_pred ccC-CcEEEEEcc
Q 001189 292 ELS-GKTRVLVTN 303 (1128)
Q Consensus 292 ~~~-~~tvilvtH 303 (1128)
.. |..+|+|-|
T Consensus 153 -~~gg~~lIVIDy 164 (338)
T 4a1f_A 153 -QHKELGIAFIDY 164 (338)
T ss_dssp -HCTTEEEEEEEE
T ss_pred -hcCCCCEEEEec
Confidence 12 567777754
No 345
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.60 E-value=3.4e-05 Score=81.13 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=41.7
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhc
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF 206 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~ 206 (1128)
++++|.+++|+|++||||||+++.|.+.++ .+.+++|++.++.+ +|+.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------~~~~i~~D~~~~~~---~~~~~ 65 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------NCSVISQDDFFKPE---SEIET 65 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------TEEEEEGGGGBCCG---GGSCB
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------CcEEEeCCccccCH---hHhhc
Confidence 677899999999999999999999999874 38899999988765 45544
No 346
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.58 E-value=9.7e-06 Score=91.95 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=49.7
Q ss_pred CccEEEEEEEEEeCCCCCCcee--------------eeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 741 SGSIKFEDVVLRYRPELPPVLH--------------GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~--------------~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
.+.+.|+||++.|+.. +..|+ |+.+.|.+|++++|+|++|+|||||++.|.+...
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4679999999999754 46888 8999999999999999999999999999999864
No 347
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.58 E-value=4.8e-05 Score=86.10 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=25.4
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
-+++|+.+.|.||+|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888764
No 348
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.55 E-value=3.9e-06 Score=101.25 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=38.4
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEE-ECCEec
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-RIL-IDGFDI 809 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G-~I~-i~g~~i 809 (1128)
.+++|++++|+|+||||||||+++|.+.+.|++| +|. +||.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999987 784 888554
No 349
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.54 E-value=0.00012 Score=84.43 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=34.0
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHc----CCcEEEEeecCchhh
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEF----KSCTMLIIAHRLNTI 942 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~----~~~Tvi~vtH~l~~~ 942 (1128)
.+|.||+|||+... |......+.+.+.+.. .+.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999876 8877777777775432 367899999988543
No 350
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.50 E-value=0.00015 Score=75.42 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=30.6
Q ss_pred HHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHHHc
Q 001189 254 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290 (1128)
Q Consensus 254 iaLARal~~~~~illLDEpts~LD~~~~~~i~~~~~~ 290 (1128)
...||+++.+|++.++| ||++|+...+.+++.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999999999887654
No 351
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.48 E-value=6.2e-05 Score=88.84 Aligned_cols=67 Identities=18% Similarity=0.345 Sum_probs=44.4
Q ss_pred cCCCEEEEeccccCCCH-HHHHHHHHHHHHHc-CCcEEEEeecCch-hhhh-cCEEEE-EeCCEEEEecChh
Q 001189 897 RRSKILVLDEATAAVDV-RTDALIQKTIREEF-KSCTMLIIAHRLN-TIID-CDRILL-LDSGRVLEYDTPE 963 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~-~t~~~i~~~l~~~~-~~~Tvi~vtH~l~-~~~~-~D~i~v-l~~G~i~~~g~~~ 963 (1128)
.+|++|++||+..-.+. .+...+...+.... .++.+|++||+.. .+.. .+++.- +..|.+++.+.|+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887764 66777778877654 4688999999843 3222 222222 3457777666554
No 352
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.47 E-value=4.6e-05 Score=78.45 Aligned_cols=29 Identities=14% Similarity=0.439 Sum_probs=26.5
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
.+|++++|+||||||||||++.|++.+++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 37899999999999999999999998864
No 353
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.45 E-value=0.00038 Score=80.13 Aligned_cols=125 Identities=10% Similarity=0.090 Sum_probs=68.3
Q ss_pred CCC--EEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCc
Q 001189 147 VGS--LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL 224 (1128)
Q Consensus 147 ~G~--~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l 224 (1128)
.+. .+.|.||+|+|||||++.+++.+.+.. ...+.++.-.+.... ..-+...++..+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~--------------~~~~~~l~~~l~~ 100 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNF--------------TAIIGEIARSLNI 100 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSH--------------HHHHHHHHHHTTC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCH--------------HHHHHHHHHHhCc
Confidence 456 899999999999999999999876542 112344432111100 1111222222110
Q ss_pred HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEeCcCCCcCHHHHHHHHHHHHcccc---CCcEEE
Q 001189 225 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV--YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---SGKTRV 299 (1128)
Q Consensus 225 ~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal--~~~~~illLDEpts~LD~~~~~~i~~~~~~~~~---~~~tvi 299 (1128)
.... ...+-++..+. +...+ ..+|.++++||+... |......+...+..... .+.++|
T Consensus 101 -------------~~~~--~~~~~~~~~~~-l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI 163 (389)
T 1fnn_A 101 -------------PFPR--RGLSRDEFLAL-LVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALV 163 (389)
T ss_dssp -------------CCCS--SCCCHHHHHHH-HHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEE
T ss_pred -------------cCCC--CCCCHHHHHHH-HHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEE
Confidence 0111 12233332221 11122 245789999999876 88877777653322122 367889
Q ss_pred EEccCccch
Q 001189 300 LVTNQLHFL 308 (1128)
Q Consensus 300 lvtH~~~~l 308 (1128)
++||+....
T Consensus 164 ~~~~~~~~~ 172 (389)
T 1fnn_A 164 IVGHNDAVL 172 (389)
T ss_dssp EEESSTHHH
T ss_pred EEECCchHH
Confidence 999987543
No 354
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.42 E-value=3.1e-05 Score=96.05 Aligned_cols=124 Identities=18% Similarity=0.107 Sum_probs=71.2
Q ss_pred eEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCCce-----------eecCcEEEEecCCCCCcccHHHHHhcCC
Q 001189 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASA-----------VIRGTVAYVPQVSWIFNATVRDNILFGS 208 (1128)
Q Consensus 142 sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~--~~g~~~-----------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~ 208 (1128)
++++++|..++|+|++|+|||||++.|++...+ ..|.+. ..+..+++.+|.+.++..+++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT- 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA- 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC-
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC-
Confidence 457789999999999999999999999976543 223220 012235555555544443333333210
Q ss_pred CCCHHHHHHHHHHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHHHHHHHHHH
Q 001189 209 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 288 (1128)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~~~~i~~~~ 288 (1128)
|+. ..++ .......-..+..++++| |+.++++.+.+.+ ..+
T Consensus 82 -----------------------pG~---------~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~-~~~ 122 (665)
T 2dy1_A 82 -----------------------PGY---------GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERAW-TVA 122 (665)
T ss_dssp -----------------------CCS---------GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHH-HHH
T ss_pred -----------------------CCc---------cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHHH-HHH
Confidence 100 0011 001111123466788888 9999999987554 333
Q ss_pred HccccCCcEEEEEccCccch
Q 001189 289 IRGELSGKTRVLVTNQLHFL 308 (1128)
Q Consensus 289 ~~~~~~~~tvilvtH~~~~l 308 (1128)
.. .+..+|++.|+.+..
T Consensus 123 ~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 123 ER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HH---TTCCEEEEEECGGGC
T ss_pred HH---ccCCEEEEecCCchh
Confidence 22 367888888887653
No 355
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.42 E-value=2.3e-05 Score=88.09 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=36.0
Q ss_pred CceeeeeEEEcCCc------EEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Q 001189 759 PVLHGLSFTIPPSD------KVGIVGRTGAGKSSMLNTLFRIVE--LERGRILI 804 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge------~v~ivG~~GsGKSTll~~l~g~~~--p~~G~I~i 804 (1128)
.+|++++..+.+++ ++||+||||||||||+++|.+++. |++|.|.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 35666666666665 899999999999999999999987 45665433
No 356
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.40 E-value=5.4e-05 Score=77.17 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=33.2
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 810 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~ 810 (1128)
.+|++++|+|++||||||+++.|.+.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 569999999999999999999999875 88889876554
No 357
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.40 E-value=0.00014 Score=81.86 Aligned_cols=107 Identities=19% Similarity=0.194 Sum_probs=68.8
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 215 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~ 215 (1128)
+.|+.+.-.+++|+++.|.|++|+|||||+.-++...-. .| ..+.|++=+ .+.+++
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------~~vl~~slE-----------------~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------DVVNLHSLE-----------------MGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------CEEEEEESS-----------------SCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------CeEEEEECC-----------------CCHHHH
Confidence 467777767999999999999999999999887753311 12 346665533 122222
Q ss_pred HHHHHH--hCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCc
Q 001189 216 EKAIDV--TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 276 (1128)
Q Consensus 216 ~~~~~~--~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~L 276 (1128)
..-+.. .++.. ..+..+. ..||+++++|++.|...+.++++++.|+|...+
T Consensus 112 ~~R~~~~~~~i~~--~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~ 164 (315)
T 3bh0_A 112 IKRLIVTAGSINA--QKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV 164 (315)
T ss_dssp HHHHHHHHTTCCH--HHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH
T ss_pred HHHHHHHHcCCCH--HHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 221111 12110 0000110 138999999999999999999999999987443
No 358
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.40 E-value=2.6e-05 Score=89.57 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=35.4
Q ss_pred ccCCCCCCChHHHHHHHHH----HHH-ccCCCEEEEeCcCCCcCHHHHHHHHHHHHc
Q 001189 239 IGERGVNISGGQKQRVSMA----RAV-YSNSDVFIFDDPLSALDAHVGRQVFDRCIR 290 (1128)
Q Consensus 239 vg~~g~~LSGGQkqRiaLA----Ral-~~~~~illLDEpts~LD~~~~~~i~~~~~~ 290 (1128)
|+.+...+|+|++||+.++ +++ ..++++ +|+|++|......+++.+..
T Consensus 298 V~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 298 TLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp EEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 4555556888899988877 666 444454 79999999988888876543
No 359
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.39 E-value=4e-05 Score=85.79 Aligned_cols=152 Identities=20% Similarity=0.181 Sum_probs=77.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhccc-cCCCCCHH
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDA 848 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~nl~-~~~~~~~~ 848 (1128)
++.+|+|+|++|+|||||++.|.|.. +.+.. ..+....++..++++++..-+. + +| |+. ..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s----~~~~tTr~~~~gi~~~~~~~i~--~---iDTpG~--~~- 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITS----RKAQTTRHRIVGIHTEGAYQAI--Y---VDTPGL--HM- 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECC----CCSSCCSSCEEEEEEETTEEEE--E---ESSSSC--CH-
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccC----CCCCcceeeEEEEEEECCeeEE--E---EECcCC--Cc-
Confidence 44589999999999999999999863 22211 1111112345677777643110 0 11 211 10
Q ss_pred HHHHHHHHhcHHHHHHHccCCcchh--hhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEeccccCCCHHH-HHHHHHHH
Q 001189 849 DLWEALERAHLKDAIRRNSLGLDAQ--VSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDVRT-DALIQKTI 923 (1128)
Q Consensus 849 ~i~~~l~~~~l~~~i~~lp~Gldt~--v~e~g~~LSgGqrqrl~lArall--~~p~iLlLDEpTs~lD~~t-~~~i~~~l 923 (1128)
+-...+... +.......-...|.. +-+... +|+|++ .+++++. ..|.|+++ +.+|... ...+.+.+
T Consensus 69 ~~~~~l~~~-~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l 139 (301)
T 1ega_A 69 EEKRAINRL-MNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHL 139 (301)
T ss_dssp HHHHHHHHH-HTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHH
T ss_pred cchhhHHHH-HHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHH
Confidence 011111110 000000001122221 122233 999887 4556665 67888888 7888866 55666666
Q ss_pred HHHcC--C--cEEEEeecCchhhhh-cCEE
Q 001189 924 REEFK--S--CTMLIIAHRLNTIID-CDRI 948 (1128)
Q Consensus 924 ~~~~~--~--~Tvi~vtH~l~~~~~-~D~i 948 (1128)
.++.+ + .++.+.+|.-+.+.. +|.+
T Consensus 140 ~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 140 QFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp HHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred HHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 65432 2 356666776655544 4443
No 360
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.37 E-value=0.00013 Score=83.19 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=25.6
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
.+++|+++.|.||+|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
No 361
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.36 E-value=2.9e-05 Score=88.14 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=47.3
Q ss_pred cEEEEeEEEEeCCCCCCCcee--------------eeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 119 AISIRNGYFSWDSKAERPTLL--------------NINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~--------------~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+.|+|++|.||. ++..|+ |+.+.+.+||+++|+|++|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4788999999985 467898 899999999999999999999999999999865
No 362
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.31 E-value=0.00091 Score=76.17 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=37.7
Q ss_pred CceeeeeE--EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCC
Q 001189 136 PTLLNINL--DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193 (1128)
Q Consensus 136 ~~L~~isl--~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 193 (1128)
+.|+.+-= -+++|+++.|.||+|||||||+..+++...+.. +.+.|+.-+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g-------g~VlyId~E~ 99 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG-------GVAAFIDAEH 99 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEeccc
Confidence 34554422 589999999999999999999999998775532 2466765543
No 363
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.29 E-value=0.00012 Score=77.17 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=27.4
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 364
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.27 E-value=0.001 Score=71.31 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCce
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELERGR 801 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~~G~ 801 (1128)
+|+|+|++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999987666553
No 365
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.27 E-value=0.0001 Score=83.07 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=35.3
Q ss_pred eeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 138 L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
+++++|++++|++++|+|+||+||||++..|++.+.+..+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4678899999999999999999999999999999876543
No 366
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.25 E-value=5.5e-05 Score=79.17 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=37.0
Q ss_pred CCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 135 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 135 ~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
....+..++..++|++++|+|+|||||||++++|++.+. ..|
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G 53 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKG 53 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcC
Confidence 457788889999999999999999999999999999886 344
No 367
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=5.2e-05 Score=86.29 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=38.2
Q ss_pred CceeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCCCCCce
Q 001189 759 PVLHGLSFTIPPSDK--VGIVGRTGAGKSSMLNTLFRIVELERGR 801 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~--v~ivG~~GsGKSTll~~l~g~~~p~~G~ 801 (1128)
.+++.++..|+.|+. +.+.||+|+||||+++++.+.+.+..+.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 588899999999998 9999999999999999999988766553
No 368
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.20 E-value=0.00016 Score=75.33 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=27.1
Q ss_pred eEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 142 sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45556899999999999999999999999875
No 369
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.20 E-value=4.9e-05 Score=86.66 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=45.9
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 809 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i 809 (1128)
.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+..|+|.+-+.|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 478899999999999999999999999999999999988888887766554
No 370
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.14 E-value=7.3e-05 Score=90.62 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=43.0
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 808 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~ 808 (1128)
.+++++++++ +|+.+.|+||+|+|||||+++|.+...+..|.|.++|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 4678888888 899999999999999999999999999999999888743
No 371
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.14 E-value=0.0013 Score=74.99 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=74.8
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcC--CCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGE--LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 221 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~--~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 221 (1128)
.+++|+++.|.|++|||||||+..++.. .++..|+ ..+.+.|+.-+.. ++.+++.+.++.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg---~~~~vlyi~~E~~---------------~~~~~l~~~~~~ 179 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY---PGGKIIFIDTENT---------------FRPDRLRDIADR 179 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB---CCCEEEEEESSSC---------------CCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC---CCCeEEEEECCCC---------------CCHHHHHHHHHH
Confidence 5899999999999999999999988875 3322222 1245777765532 223333333332
Q ss_pred hCcHH--HHhcCCCCCcccccCCCCCCChH-HHHHHHHHHHHc----cCCCEEEEeCcCCCcCHH-------H-----HH
Q 001189 222 TSLQH--DLDLLPGGDVTEIGERGVNISGG-QKQRVSMARAVY----SNSDVFIFDDPLSALDAH-------V-----GR 282 (1128)
Q Consensus 222 ~~l~~--~~~~l~~g~~t~vg~~g~~LSGG-QkqRiaLARal~----~~~~illLDEpts~LD~~-------~-----~~ 282 (1128)
.++.. .++.+ .+- ...++. +.+.+..++.++ .+++++++|..++-.... . ..
T Consensus 180 ~g~~~~~~l~~l------~~~---~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~ 250 (343)
T 1v5w_A 180 FNVDHDAVLDNV------LYA---RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 250 (343)
T ss_dssp TTCCHHHHHHTE------EEE---ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHH
T ss_pred cCCCHHHHHhce------eEe---ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHH
Confidence 22211 11111 000 012232 334555556665 579999999999877542 1 12
Q ss_pred HHHHHHHccc-cCCcEEEEEccCc
Q 001189 283 QVFDRCIRGE-LSGKTRVLVTNQL 305 (1128)
Q Consensus 283 ~i~~~~~~~~-~~~~tvilvtH~~ 305 (1128)
.+...+.... ..+.++|++.|-.
T Consensus 251 ~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 251 QMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHHhCCEEEEEeece
Confidence 2333333222 2478888888854
No 372
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.14 E-value=0.00045 Score=79.18 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=26.7
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELER 799 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~ 799 (1128)
.++..+.|.||+|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999876543
No 373
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.13 E-value=9e-05 Score=85.24 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=34.9
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+|+++++.+++|++++|+||+|||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999864
No 374
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.12 E-value=0.00023 Score=84.03 Aligned_cols=56 Identities=29% Similarity=0.430 Sum_probs=36.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEecCCCChHHhhhceEEEcCC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVE------------LERGRILIDGFDIAKFGLMDLRKILGIIPQS 827 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 827 (1128)
-+++|+|++|+|||||++.|+|... |.+|.+.++|.++.-++....|+...+.+|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~ 248 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRT 248 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC----------
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhh
Confidence 3699999999999999999999853 6789999999866544433344444444443
No 375
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.12 E-value=0.0002 Score=74.86 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=25.0
Q ss_pred eEEeeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 142 sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
-++.++|++++|+|+||||||||+++|+|.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3566799999999999999999999999876
No 376
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.11 E-value=0.00013 Score=83.27 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=37.0
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 811 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~ 811 (1128)
+++.+|+|+|++|||||||++.|.|.+.+.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3577899999999999999999999999999999888776654
No 377
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.07 E-value=0.0018 Score=71.70 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccccCCCHH----------HHHHHHHHHHHHc-----CCcEEEEeecCchhhh----
Q 001189 883 VGQRQLLSLSRALLRRSKILVLDEATAAVDVR----------TDALIQKTIREEF-----KSCTMLIIAHRLNTII---- 943 (1128)
Q Consensus 883 gGqrqrl~lArall~~p~iLlLDEpTs~lD~~----------t~~~i~~~l~~~~-----~~~Tvi~vtH~l~~~~---- 943 (1128)
++++.+..++++...+|.+|++||+.+-.+.. ....+...+.... .+..+|.+|++.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 56777777888888899999999998776532 1223333444321 1245777888765432
Q ss_pred -hcCEEEEE
Q 001189 944 -DCDRILLL 951 (1128)
Q Consensus 944 -~~D~i~vl 951 (1128)
++++++.+
T Consensus 178 ~R~~~~i~~ 186 (297)
T 3b9p_A 178 RRFTKRVYV 186 (297)
T ss_dssp HHCCEEEEC
T ss_pred hhCCeEEEe
Confidence 36665444
No 378
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.04 E-value=0.00039 Score=78.23 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=65.6
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
+.|+++.--+++|+.+.|.|++|+|||||+..++.-.-- .| ..+.|++=
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~sl------------ 104 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSL------------ 104 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEES------------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEEC------------
Confidence 467777766999999999999999999999877643211 11 11222221
Q ss_pred cccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCC-CCCChhHHHHHHHHHHhccCCCEEEEeccccC
Q 001189 839 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG-ENFSVGQRQLLSLSRALLRRSKILVLDEATAA 910 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g-~~LSgGqrqrl~lArall~~p~iLlLDEpTs~ 910 (1128)
+.+.+++.+-+... -.|.+..--..| ..||.++++|+..|...+.++++++.|+|...
T Consensus 105 -----E~s~~~l~~R~~~~---------~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 105 -----EMGKKENIKRLIVT---------AGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -----SSCHHHHHHHHHHH---------HTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -----CCCHHHHHHHHHHH---------HcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 11223332222110 011111100111 12899999999999999999999999998754
No 379
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.03 E-value=0.00013 Score=92.56 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=28.5
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 797 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p 797 (1128)
|.+++|+.+.|+||+|+|||||+++|.+.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35788999999999999999999999998753
No 380
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.01 E-value=0.0017 Score=72.04 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHH
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 226 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~ 226 (1128)
++.-+.|.||+|+||||+++++++.... .+-++.- +.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~----------~~~~i~~-~~l------------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA----------TFLNISA-ASL------------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC----------EEEEEES-TTT-------------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC----------CeEEeeH-HHH-------------------------------
Confidence 5678999999999999999999986521 0111100 000
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCH
Q 001189 227 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 278 (1128)
Q Consensus 227 ~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~ 278 (1128)
.. ..+ -+++++.|..++++...+|.++++||+.+-++.
T Consensus 91 -----~~---~~~------~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 91 -----TS---KYV------GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp -----SS---SSC------SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred -----hh---ccc------chHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 00 001 146788888888888889999999999887653
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.00 E-value=0.00016 Score=74.08 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=32.9
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc--eEEECCEec
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERG--RILIDGFDI 809 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G--~I~i~g~~i 809 (1128)
++|+.++|+|++||||||+.+.|.+.+.+ .| .|.+||..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998876 56 666775433
No 382
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.95 E-value=0.00098 Score=74.24 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=41.0
Q ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCC
Q 001189 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 811 (1128)
Q Consensus 764 vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~ 811 (1128)
++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 677766 99999999999999999999999999888899887766543
No 383
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.95 E-value=0.0013 Score=77.57 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=31.1
Q ss_pred CCCEEEEeCcCCCcCH-HHHHHHHHHHHccccCCcEEEEEccCc
Q 001189 263 NSDVFIFDDPLSALDA-HVGRQVFDRCIRGELSGKTRVLVTNQL 305 (1128)
Q Consensus 263 ~~~illLDEpts~LD~-~~~~~i~~~~~~~~~~~~tvilvtH~~ 305 (1128)
++++|++||+..-.+. .+.+.++..+-.....|+.+|++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999887764 455666654333334578899999884
No 384
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.93 E-value=0.00094 Score=76.48 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=26.1
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELPPV 175 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~ 175 (1128)
.++..+.|.||+|+|||||++.+++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999977543
No 385
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.92 E-value=0.00022 Score=74.63 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=29.0
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
.++|.+++|+|++||||||+++.|.+.+++..|
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 567899999999999999999999998876543
No 386
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.92 E-value=0.0004 Score=77.64 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC-CCCCCc-eeecCcEEEEecCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELP-PVSDAS-AVIRGTVAYVPQVS 193 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~-~~~g~~-~~~~~~i~~v~Q~~ 193 (1128)
++.+++|+|++|+|||||++.|+|.-- +.++.. ...+...+++.++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA 55 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC
Confidence 344899999999999999999999742 111111 11233467777754
No 387
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.91 E-value=0.00021 Score=74.42 Aligned_cols=41 Identities=27% Similarity=0.309 Sum_probs=31.2
Q ss_pred EEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 751 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 751 ~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
++|++- .++++++++..+++ +++|+|++|+|||||++.+.+
T Consensus 7 ~~~~~~-~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGF-SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH-HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 445433 36899999988877 689999999999999999986
No 388
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.90 E-value=0.0025 Score=71.84 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=75.7
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCC-CCC-CCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGEL-PPV-SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 221 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~-~~~-~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 221 (1128)
.+++|+++.|.|++|||||||+..++... .+. .|+ ..+.+.|+.=+.. ++.+++.+.++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg---~~~~vlyi~~e~~---------------~~~~~l~~~~~~ 164 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG---LSGKAVYIDTEGT---------------FRWERIENMAKA 164 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC---CSCEEEEEESSSC---------------CCHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC---CCCeEEEEECCCC---------------CCHHHHHHHHHH
Confidence 68999999999999999999999888753 221 121 1245677765432 223333333333
Q ss_pred hCcHH--HHhcCCCCCcccccCCCCCCChH-HHHHHHHHHHHc---cCCCEEEEeCcCCCcCHH--------H----HHH
Q 001189 222 TSLQH--DLDLLPGGDVTEIGERGVNISGG-QKQRVSMARAVY---SNSDVFIFDDPLSALDAH--------V----GRQ 283 (1128)
Q Consensus 222 ~~l~~--~~~~l~~g~~t~vg~~g~~LSGG-QkqRiaLARal~---~~~~illLDEpts~LD~~--------~----~~~ 283 (1128)
.+... .++.+ .+.. ..++. +.+.+..++.++ .+++++++|+.++-.+.. . ...
T Consensus 165 ~g~~~~~~~~~l------~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~ 235 (324)
T 2z43_A 165 LGLDIDNVMNNI------YYIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNK 235 (324)
T ss_dssp TTCCHHHHHHTE------EEEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHH
T ss_pred hCCCHHHHhccE------EEEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHH
Confidence 33211 11111 0000 12233 346677777777 579999999999876431 1 122
Q ss_pred HHHHHHccc-cCCcEEEEEccCc
Q 001189 284 VFDRCIRGE-LSGKTRVLVTNQL 305 (1128)
Q Consensus 284 i~~~~~~~~-~~~~tvilvtH~~ 305 (1128)
+...+.... ..+.++|++.|-.
T Consensus 236 ~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 236 HLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHhCCEEEEEccee
Confidence 233232222 2378888888754
No 389
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.87 E-value=0.00019 Score=77.96 Aligned_cols=47 Identities=30% Similarity=0.407 Sum_probs=38.4
Q ss_pred EEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 122 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 122 ~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
++++.+.|. ...+++++++++++| ++|+||||||||||+++|+++..
T Consensus 28 l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 28 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 445555453 235899999999999 99999999999999999999864
No 390
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.86 E-value=0.0051 Score=70.19 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=28.8
Q ss_pred Cceeeee--EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 759 PVLHGLS--FTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 759 ~~l~~vs--l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+.|+.+- =-+++|+.+.|.|++|+|||||...++...
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455542 137899999999999999999998777544
No 391
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.84 E-value=0.00069 Score=69.91 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=20.8
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
.+++++++..++. +++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3788999988777 889999999999999999997
No 392
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.82 E-value=0.00046 Score=69.92 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=27.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g 806 (1128)
.|++++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 55553
No 393
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.82 E-value=0.00043 Score=70.15 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.|.+++|+|++||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
No 394
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.81 E-value=0.00023 Score=78.54 Aligned_cols=46 Identities=30% Similarity=0.395 Sum_probs=37.7
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+++.+.|. ...+++++++++++| ++|+||||||||||+++|+++..
T Consensus 53 ~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 53 KEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 44444443 235889999999999 99999999999999999999874
No 395
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.81 E-value=0.0044 Score=66.35 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPPVS 176 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~~~ 176 (1128)
.++|+|++|+|||||++.|+|...+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~ 57 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHS 57 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCcc
Confidence 689999999999999999999765544
No 396
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.80 E-value=0.0004 Score=74.39 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=31.6
Q ss_pred eeeeeEEEc---CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Q 001189 761 LHGLSFTIP---PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 804 (1128)
Q Consensus 761 l~~vsl~i~---~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i 804 (1128)
|.++|+.+. +|..+.|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 555566555 8999999999999999999999999887 666644
No 397
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.80 E-value=0.0035 Score=67.95 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=24.1
Q ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 761 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 761 l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
++++++.+++| +.|+||+|+||||++++|.+...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 34444444444 89999999999999999998764
No 398
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.78 E-value=0.0016 Score=76.07 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=61.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHhCcHH
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 226 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~ 226 (1128)
++.+++++|++||||||++..|++.+.+. | .+|.++.-+++ .....+. .....+..++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G------~kVllv~~D~~--r~~a~eq-----------L~~~~~~~gv-- 153 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-G------YKVGLVAADVY--RPAAYDQ-----------LLQLGNQIGV-- 153 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-T------CCEEEEEECCS--CHHHHHH-----------HHHHHHTTTC--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-C------CeEEEEecCcc--chhHHHH-----------HHHHHHhcCC--
Confidence 57899999999999999999999988654 2 24556655532 1111111 1111111111
Q ss_pred HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcC-CC--cCHHHHHHHHH
Q 001189 227 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL-SA--LDAHVGRQVFD 286 (1128)
Q Consensus 227 ~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpt-s~--LD~~~~~~i~~ 286 (1128)
| ..... ....--.-.+-+++++...++|++|+|+|- .+ .|+.....+..
T Consensus 154 -----~----~~~~~--~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~ 205 (433)
T 3kl4_A 154 -----Q----VYGEP--NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKE 205 (433)
T ss_dssp -----C----EECCT--TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHH
T ss_pred -----c----eeecc--ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHH
Confidence 1 00000 111222223446777777899999999997 45 77776555543
No 399
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.78 E-value=0.00067 Score=67.52 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=25.2
Q ss_pred eeeeEEeeCCCEEEEEcCCCccHHHHHHHHhc
Q 001189 139 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 139 ~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G 170 (1128)
++..+++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455666655 999999999999999999863
No 400
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.77 E-value=0.00084 Score=68.10 Aligned_cols=27 Identities=48% Similarity=0.496 Sum_probs=23.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++|.+++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999999864
No 401
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.77 E-value=0.00041 Score=74.22 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=27.1
Q ss_pred eEEeeCCCEEEEEcCCCccHHHHHHHHhcC
Q 001189 142 NLDIPVGSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 142 sl~i~~G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+.+.++|++++|.|+||||||||+++|.|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345679999999999999999999999997
No 402
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.75 E-value=0.002 Score=69.03 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.6
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHh
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLF 792 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~ 792 (1128)
+..|+.+.++|||||||||++.++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 3568999999999999999887664
No 403
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.74 E-value=0.00079 Score=66.99 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=25.2
Q ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 762 ~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
++.++++.+| ..+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666655 889999999999999999873
No 404
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.72 E-value=0.0025 Score=74.20 Aligned_cols=47 Identities=17% Similarity=0.012 Sum_probs=37.1
Q ss_pred EeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCC
Q 001189 123 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 176 (1128)
Q Consensus 123 ~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~ 176 (1128)
++++..|+.. . ++++|+ +|++++++|++||||||++..|++.+.+..
T Consensus 80 ~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g 126 (425)
T 2ffh_A 80 EALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG 126 (425)
T ss_dssp HHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3455556421 1 577887 899999999999999999999999987753
No 405
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.72 E-value=0.0019 Score=72.66 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
.+.-+.|.||+|+|||||++++.+.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3467899999999999999999987643
No 406
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.72 E-value=0.00027 Score=74.52 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=36.7
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc--eEEECC
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG--RILIDG 806 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G--~I~i~g 806 (1128)
+.+++|..+.|+|++||||||+.+.|.+.+.|..| .+.++|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 45678999999999999999999999999988888 888875
No 407
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.69 E-value=0.00065 Score=69.03 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.6
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+|++++|+|++||||||+++.|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999998864
No 408
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.67 E-value=0.0023 Score=71.27 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=27.2
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+.++++..+.|.||+|+|||||+++|.+...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3467889999999999999999999998763
No 409
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.63 E-value=0.003 Score=71.01 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=23.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELE 798 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~ 798 (1128)
+..+.|.||+|+|||||++.+.+.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4568899999999999999999876543
No 410
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.60 E-value=0.00044 Score=83.43 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=31.5
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
.+++|++++|+|+||||||||+++|+|.+.|.+|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 5789999999999999999999999999988765
No 411
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.59 E-value=0.0032 Score=79.76 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=29.7
Q ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 764 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 764 vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
.++.+.+|+.+.|+||+|+|||||+++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 466788999999999999999999999999873
No 412
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.56 E-value=0.00069 Score=72.54 Aligned_cols=32 Identities=34% Similarity=0.389 Sum_probs=26.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHh---cCCCCCCceE
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLF---RIVELERGRI 802 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~---g~~~p~~G~I 802 (1128)
.-+++|.||+||||||+.+.|. |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4489999999999999999998 5545556655
No 413
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.56 E-value=0.0048 Score=68.63 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 802 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I 802 (1128)
...+.|+||+|+||||++++|.+.+.+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 45688999999999999999999987766643
No 414
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.56 E-value=0.00047 Score=78.36 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=34.3
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhh
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~ 942 (1128)
+++|+++|| ...++......+.+.+.+......+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 567999999 67889988888999888755556677788776543
No 415
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.54 E-value=0.00045 Score=72.40 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=26.3
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
...+|..++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998763
No 416
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.49 E-value=0.0023 Score=66.57 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.4
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVELE 798 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~p~ 798 (1128)
..+.|.||+|+|||||++++.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 678899999999999999999876543
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.48 E-value=0.0012 Score=70.75 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=28.0
Q ss_pred ceeeeeEEee---CCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 137 TLLNINLDIP---VGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 137 ~L~~isl~i~---~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
-|.++||.+. +|.+++|.|++||||||+++.|...+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4667777766 8999999999999999999999998876
No 418
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.48 E-value=0.00084 Score=72.00 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=67.7
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHh
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVT 222 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~ 222 (1128)
.+.+|+.++++|++||||||++.+++.......+. ...++++.|.|... ..++.+|+........ -..+
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~------~~~~ 141 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERVAFERGEEP------GKSC 141 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHHHHTTTCCT------TSSE
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHHHHHhcccc------CceE
Confidence 34578999999999999999888765432111111 12356677777543 4466666642110000 0000
Q ss_pred CcHHHHhcCCCCCcccccCC---CCCCChHHHHHHHHHHHHccCCCEEEEeCcCC-CcCHHHHHHHHHHHH
Q 001189 223 SLQHDLDLLPGGDVTEIGER---GVNISGGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCI 289 (1128)
Q Consensus 223 ~l~~~~~~l~~g~~t~vg~~---g~~LSGGQkqRiaLARal~~~~~illLDEpts-~LD~~~~~~i~~~~~ 289 (1128)
+.... .+...... ..-.+.|.-.+.. +..+.+.+++++||+-. ++|........+.+.
T Consensus 142 g~~~~-------~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 142 GYSVR-------FESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp EEEET-------TEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred EEeec-------hhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 00000 00000000 1113457666653 33588999999999976 577765544444443
No 419
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.41 E-value=0.0014 Score=75.37 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=34.2
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCE
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRI-----------VELERGRILIDGF 807 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~-----------~~p~~G~I~i~g~ 807 (1128)
.+..|.++||||++|+|||||++.|.|. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3567889999999999999999999998 6788898887763
No 420
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.32 E-value=0.00056 Score=77.87 Aligned_cols=52 Identities=19% Similarity=0.061 Sum_probs=43.1
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCC
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 194 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 194 (1128)
.+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+..+ +++++..+|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~-------~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL-------KVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC-------CEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------eEEEEeecCC
Confidence 578899999999999999999999999999999998866432 4566666553
No 421
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.28 E-value=0.016 Score=67.61 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=28.4
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 804 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i 804 (1128)
++.+++++|++|+||||++..|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46789999999999999999999887754445544
No 422
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.27 E-value=0.0061 Score=65.85 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+|+|+|++|+|||||++.|+|--
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999864
No 423
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.27 E-value=0.0098 Score=65.30 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.3
Q ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 768 IPPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 768 i~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+.++..+.|.||+|+||||+++++.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999998764
No 424
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.26 E-value=0.0035 Score=62.82 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.2
Q ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
-+++|+|++|+|||||++.|.|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3699999999999999999998653
No 425
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.26 E-value=0.0046 Score=73.19 Aligned_cols=57 Identities=9% Similarity=0.161 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecccc-CCCHHHHHHHHHHHHHHcCCcEEEEeecCchhh
Q 001189 883 VGQRQLLSLSRALLRRSKILVLDEATA-AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 883 gGqrqrl~lArall~~p~iLlLDEpTs-~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~ 942 (1128)
+.|.+....+...+++++++|+..... ++.. .+..+.+.+++ .++.+|+|.+..+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~-~d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTA-ADEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCH-HHHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh-HHHHHHHHHHH--cCCCEEEEEECccch
Confidence 357777888888889999777665444 4444 44566677765 577888888877654
No 426
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.23 E-value=0.011 Score=64.75 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=24.5
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+.++.-+.|.||+|+|||||+++++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566679999999999999999999875
No 427
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.20 E-value=0.0023 Score=67.92 Aligned_cols=28 Identities=7% Similarity=0.170 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVEL 797 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p 797 (1128)
++..+.|.||+|+||||+++.+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999876543
No 428
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.19 E-value=0.0027 Score=64.73 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHhcC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
+++|+|++|+|||||++.|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 429
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.18 E-value=0.00044 Score=79.37 Aligned_cols=58 Identities=28% Similarity=0.438 Sum_probs=36.4
Q ss_pred CccEEEEEEEEEeCCCCCCceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Q 001189 741 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806 (1128)
Q Consensus 741 ~g~i~~~~v~~~y~~~~~~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g 806 (1128)
.+.+.++|++..|... .++++++|+| +|+|++|+|||||++.|++...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~k--~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHTH--HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCCe--eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 3568889998888543 5789999876 99999999999999999988666666554443
No 430
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.16 E-value=0.0023 Score=65.73 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=26.6
Q ss_pred eeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC
Q 001189 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 140 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
No 431
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.15 E-value=0.0061 Score=64.25 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=34.0
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchhh
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 942 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~~ 942 (1128)
.+|.+|++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999876 78888888888876544467788888876544
No 432
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.12 E-value=0.0017 Score=66.62 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=33.3
Q ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EEC
Q 001189 766 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-LID 805 (1128)
Q Consensus 766 l~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I-~i~ 805 (1128)
+...+|..+.|+|++||||||+.+.|.+.+.+..|.+ .++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 3446799999999999999999999999888776765 344
No 433
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.08 E-value=0.0021 Score=73.22 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 194 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 194 (1128)
++.+++|+|++|||||||++.|+|.+.+..+ +|+++..+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~-------~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGH-------KLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-------CEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCC-------eEEEEeecCC
Confidence 4679999999999999999999998766533 4677776664
No 434
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.06 E-value=0.0031 Score=66.06 Aligned_cols=30 Identities=33% Similarity=0.609 Sum_probs=24.5
Q ss_pred eeeEEeeCCCEEEEEcCCCccHHHHHHHHhc
Q 001189 140 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 140 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+.++++.+| +++|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 455666654 999999999999999998853
No 435
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.05 E-value=0.0028 Score=65.13 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=26.5
Q ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Q 001189 763 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 763 ~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
++|+..++|.+++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
No 436
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.03 E-value=0.0043 Score=65.79 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999988664
No 437
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.99 E-value=0.0024 Score=66.72 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=26.3
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
...+|.+++|+|++||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999998764
No 438
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.99 E-value=0.011 Score=65.80 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.3
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELPPVS 176 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~~~~ 176 (1128)
..+.|+||+|+||||++++|++.+.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~ 75 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTE 75 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCC
Confidence 4788999999999999999999876543
No 439
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.98 E-value=0.019 Score=64.43 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=24.6
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
-+++|+.+.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987775
No 440
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.98 E-value=0.0031 Score=64.28 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=25.9
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
++|++++|+|++||||||+++.|.+.+++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47899999999999999999999997754
No 441
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.95 E-value=0.0039 Score=65.29 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=24.4
Q ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Q 001189 762 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 792 (1128)
Q Consensus 762 ~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~ 792 (1128)
++.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666654 88999999999999999886
No 442
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.93 E-value=0.017 Score=68.12 Aligned_cols=106 Identities=15% Similarity=0.140 Sum_probs=67.2
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 215 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~ 215 (1128)
+.|+.+.--+++|+++.|.|++|+|||||+.-++.......| .++.|++=+ .+.+++
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------~~vl~~slE-----------------~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------VGVGIYSLE-----------------MPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------CCEEEEESS-----------------SCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------CeEEEEECC-----------------CCHHHH
Confidence 356766666999999999999999999999888765432112 235555432 122222
Q ss_pred HHH-H-HHhCcHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCc
Q 001189 216 EKA-I-DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 276 (1128)
Q Consensus 216 ~~~-~-~~~~l~~~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~L 276 (1128)
..- + ...++. .. .+. ...|+..+++|+.-|...+.+.++++.|+|...+
T Consensus 245 ~~R~~~~~~~i~--~~--------~l~--~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~ 295 (444)
T 2q6t_A 245 TLRMMCSEARID--MN--------RVR--LGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTL 295 (444)
T ss_dssp HHHHHHHHTTCC--TT--------TCC--GGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBH
T ss_pred HHHHHHHHcCCC--HH--------HHh--CCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCH
Confidence 221 1 111111 01 111 1369999999999888888888999988774443
No 443
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.88 E-value=0.0057 Score=63.54 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.1
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 149 SLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 149 ~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
.-+.|.||+|+|||||+++++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999987643
No 444
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.87 E-value=0.0033 Score=64.13 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=29.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEe
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFD 808 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~---~G~I~i~g~~ 808 (1128)
-..++|+|++|||||||++.|.+.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3579999999999999999999876543 3677776644
No 445
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.87 E-value=0.028 Score=55.15 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVEL 797 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p 797 (1128)
.+.-+-|.||+|+|||++.+.|......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 3455889999999999999999887544
No 446
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.82 E-value=0.0045 Score=62.64 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
++|.+++|+|++|+|||||++.|.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999865
No 447
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.72 E-value=0.0057 Score=62.87 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=21.3
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
.+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999988777 8899999999999999999974
No 448
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.67 E-value=0.003 Score=65.76 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=26.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g 806 (1128)
..+++|+|++||||||+.+.|.+.+ |.+.+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 4689999999999999999998875 4555654
No 449
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.64 E-value=0.036 Score=59.68 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHc---cCCCEEEEeCcCCCcCHHHHHHHHHHHHcc---ccCCcEEEEEccCccc
Q 001189 247 SGGQKQRVSMARAVY---SNSDVFIFDDPLSALDAHVGRQVFDRCIRG---ELSGKTRVLVTNQLHF 307 (1128)
Q Consensus 247 SGGQkqRiaLARal~---~~~~illLDEpts~LD~~~~~~i~~~~~~~---~~~~~tvilvtH~~~~ 307 (1128)
+.|++.+-.+.|+++ .+++++|+--+.+.++... .++++.+... ...+.++|+++|..+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 344666666777774 7888777654445565543 3344433321 1236799999987553
No 450
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.64 E-value=0.0055 Score=63.73 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHhc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g 793 (1128)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 451
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.61 E-value=0.0088 Score=68.18 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=35.4
Q ss_pred CceeeeeE---EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecC
Q 001189 136 PTLLNINL---DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 192 (1128)
Q Consensus 136 ~~L~~isl---~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~ 192 (1128)
+.|+.+ | -+++|+++.|.|++|+|||||...++...... | ..+.|+.-+
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g------~~vlyid~E 100 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-G------KTCAFIDAE 100 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-T------CCEEEEESS
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-C------CeEEEEeCC
Confidence 456555 3 38999999999999999999998887654221 2 246676654
No 452
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.61 E-value=0.0094 Score=70.49 Aligned_cols=55 Identities=25% Similarity=0.177 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCcC-CCcCHHHHHHHHHHHHccccCCcEEEEEccCcc
Q 001189 248 GGQKQRVSMARAVYSNSDVFIFDDPL-SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 306 (1128)
Q Consensus 248 GGQkqRiaLARal~~~~~illLDEpt-s~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~ 306 (1128)
+.|++-..++...+.++|++|+.-.. .++... ..++.+.+.+ .++.+|+|.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~---~~~pvilV~NK~D 142 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR---TKKPVVLAVNKLD 142 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT---CCSCEEEEEECC-
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH---cCCCEEEEEECcc
Confidence 34888888899999999988765444 445554 4556554322 4677788776654
No 453
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.57 E-value=0.0061 Score=62.18 Aligned_cols=26 Identities=38% Similarity=0.694 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIVELE 798 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~~p~ 798 (1128)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 454
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.55 E-value=0.0052 Score=63.92 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001189 150 LVAIVGGTGEGKTSLISAMLG 170 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G 170 (1128)
+++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 455
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.50 E-value=0.002 Score=66.97 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=32.0
Q ss_pred EEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcC
Q 001189 126 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 126 ~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
+++|++ -.++++++++..+++ .++++|++|+|||||++.+.+.
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 345553 346899999998887 5899999999999999999873
No 456
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.49 E-value=0.0036 Score=67.92 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=33.0
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 809 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i 809 (1128)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.++|-.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 356688999999999999999999998764 35677877443
No 457
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.44 E-value=0.0023 Score=67.33 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=30.4
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 177 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g 177 (1128)
+.+++|.+++|+|++||||||+.+.|.+.+.|..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 55788999999999999999999999998865444
No 458
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.39 E-value=0.0072 Score=69.95 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=31.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Q 001189 770 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 805 (1128)
Q Consensus 770 ~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~ 805 (1128)
.+..+.|+|+|||||||+++.|+..+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 577899999999999999999998887888888774
No 459
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.38 E-value=0.011 Score=67.37 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=30.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHhc-----------CCCCCCceEEECC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFR-----------IVELERGRILIDG 806 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g-----------~~~p~~G~I~i~g 806 (1128)
|-+++|||++|+|||||++.|++ -+.|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4567788887765
No 460
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.37 E-value=0.0044 Score=63.55 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=27.8
Q ss_pred EeeCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001189 144 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPV 175 (1128)
Q Consensus 144 ~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~ 175 (1128)
...+|.+++|+|++||||||+.+.|++.+.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 34578999999999999999999999887653
No 461
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.33 E-value=0.083 Score=60.34 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.4
Q ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC
Q 001189 767 TIPPSDKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 767 ~i~~Ge~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
-+++|+.+.|.||+|+|||||...++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999999776643
No 462
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.33 E-value=0.018 Score=67.70 Aligned_cols=108 Identities=20% Similarity=0.173 Sum_probs=64.5
Q ss_pred CceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCCCChHHhhhceEEEcCCCccccccHhhc
Q 001189 759 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 838 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~~n 838 (1128)
+.|+.+.--+++|+.+.|.||+|+|||||+.-++.-.....|. .+.|+.=
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~------------------~vl~~sl------------ 237 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV------------------GVGIYSL------------ 237 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC------------------CEEEEES------------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC------------------eEEEEEC------------
Confidence 4577776568999999999999999999998887654322220 1222111
Q ss_pred cccCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccccCC
Q 001189 839 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 911 (1128)
Q Consensus 839 l~~~~~~~~~~i~~~l~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGqrqrl~lArall~~p~iLlLDEpTs~l 911 (1128)
+.+.+++.+-+... -.|.+..--..| .||..+.+|+.-|...+.+.++.+.|+|...+
T Consensus 238 -----E~~~~~l~~R~~~~---------~~~i~~~~l~~g-~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~ 295 (444)
T 2q6t_A 238 -----EMPAAQLTLRMMCS---------EARIDMNRVRLG-QLTDRDFSRLVDVASRLSEAPIYIDDTPDLTL 295 (444)
T ss_dssp -----SSCHHHHHHHHHHH---------HTTCCTTTCCGG-GCCHHHHHHHHHHHHHHHTSCEEEECCTTCBH
T ss_pred -----CCCHHHHHHHHHHH---------HcCCCHHHHhCC-CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCH
Confidence 11222222211100 012211100112 58999999998888888888899988875443
No 463
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.32 E-value=0.0039 Score=74.20 Aligned_cols=36 Identities=39% Similarity=0.587 Sum_probs=33.2
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.+++++++.+++| +.|+||+|+|||||+++|+|+..
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999 99999999999999999999864
No 464
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.28 E-value=0.064 Score=61.11 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.0
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.+...+.|.||+|+|||||++++....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999998764
No 465
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.25 E-value=0.0097 Score=68.01 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=24.3
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
..+..+.|.||+|+||||+++.+.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998764
No 466
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.24 E-value=0.016 Score=59.09 Aligned_cols=28 Identities=39% Similarity=0.583 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHhcC-----CCCCCc
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRI-----VELERG 800 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~-----~~p~~G 800 (1128)
+++|+|++|+|||||++.+.+- +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 6899999999999999766643 455555
No 467
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.17 E-value=0.0035 Score=70.85 Aligned_cols=38 Identities=34% Similarity=0.491 Sum_probs=34.0
Q ss_pred CceeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCC
Q 001189 759 PVLHGLSFTIPPSDK--VGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 759 ~~l~~vsl~i~~Ge~--v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
.+++.+++.+++|++ ++|+|++||||||+.++|.+.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 468888999999999 99999999999999999998653
No 468
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.09 E-value=0.0088 Score=62.14 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 469
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.09 E-value=0.0038 Score=70.56 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=33.5
Q ss_pred CceeeeeEEeeCCCE--EEEEcCCCccHHHHHHHHhcCC
Q 001189 136 PTLLNINLDIPVGSL--VAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~--~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367888889999999 9999999999999999999875
No 470
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.09 E-value=0.013 Score=58.47 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
No 471
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.08 E-value=0.02 Score=67.34 Aligned_cols=107 Identities=18% Similarity=0.185 Sum_probs=63.3
Q ss_pred ceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH-
Q 001189 137 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY- 215 (1128)
Q Consensus 137 ~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~- 215 (1128)
-|+.+.--+++|+++.|.|++|+|||||+.-++...-.. | .++.|++=+ .+.+++
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g------~~vl~fSlE-----------------ms~~ql~ 241 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D------DVVNLHSLE-----------------MGKKENI 241 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T------CEEEEECSS-----------------SCTTHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C------CEEEEEECC-----------------CCHHHHH
Confidence 455554468999999999999999999987776533111 1 246666543 111111
Q ss_pred HHHHH-HhCcHH-HHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCcCCCcCHHH
Q 001189 216 EKAID-VTSLQH-DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHV 280 (1128)
Q Consensus 216 ~~~~~-~~~l~~-~~~~l~~g~~t~vg~~g~~LSGGQkqRiaLARal~~~~~illLDEpts~LD~~~ 280 (1128)
.+.+. ..++.. .+. .|. ..|+..+.+|+.-|...+.+.++++.|+|. +++..
T Consensus 242 ~R~~~~~~~i~~~~l~---~g~--------~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~ 295 (444)
T 3bgw_A 242 KRLIVTAGSINAQKIK---AAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNY 295 (444)
T ss_dssp HHHHHHHSCCCHHHHH---HTG--------GGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHH
T ss_pred HHHHHHHcCCCHHHHh---ccc--------CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHH
Confidence 11111 112211 111 010 127788888888887777788888888774 45443
No 472
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.07 E-value=0.0092 Score=60.89 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.2
Q ss_pred eCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 146 PVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 146 ~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998543
No 473
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.06 E-value=0.0046 Score=74.78 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=34.0
Q ss_pred CceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 136 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 136 ~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
.+++++++++ +|+.++|+||+|+|||||+++|++.+.+
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4677888888 8999999999999999999999998855
No 474
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.03 E-value=0.014 Score=65.33 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+.-+.|.||+|+|||+|+.+|.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999999987654
No 475
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.03 E-value=0.011 Score=60.21 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
+++|+|++|+|||||++.+.|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999997533
No 476
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.99 E-value=0.011 Score=60.46 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.2
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998543
No 477
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.95 E-value=0.013 Score=59.65 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.1
Q ss_pred cEEEEECCCCCCHHHHHHHHhcC
Q 001189 772 DKVGIVGRTGAGKSSMLNTLFRI 794 (1128)
Q Consensus 772 e~v~ivG~~GsGKSTll~~l~g~ 794 (1128)
=+++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 478
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.92 E-value=0.048 Score=57.18 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=30.0
Q ss_pred CCCEEEEeCcCCCcCHHHHHHHHHHHHccccCCcEEEEEccCccch
Q 001189 263 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 308 (1128)
Q Consensus 263 ~~~illLDEpts~LD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l 308 (1128)
++.++++||+-. +|+.....+...+ .....+..+|++|++...+
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l-~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTL-EEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHH-HSCCTTEEEEEEESCGGGS
T ss_pred CceEEEEECccc-ccHHHHHHHHHHH-hcCCCceEEEEEeCChHhC
Confidence 578999999765 7887777666543 3223456788888876543
No 479
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.86 E-value=0.11 Score=55.96 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=22.5
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
++..-+.|.||+|+||||+++++...+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 334558899999999999999998754
No 480
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.83 E-value=0.015 Score=62.23 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=24.3
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.+|.+++|+|++||||||+.+.|.+.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 578899999999999999999998743
No 481
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.81 E-value=0.033 Score=59.01 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=33.9
Q ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchh-----------hhhcCEEEEEe
Q 001189 898 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT-----------IIDCDRILLLD 952 (1128)
Q Consensus 898 ~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~-----------~~~~D~i~vl~ 952 (1128)
+++++++||.-- ++.+.-+.+.. |.. .+.+||++-|+.++ +.-||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~~-L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVANI-LAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHHH-HHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHHHH-HHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 76553333322 333 48899999994322 23389988764
No 482
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.80 E-value=0.2 Score=55.24 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
+..+.|.||+|+||||+++.+...+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998887653
No 483
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.80 E-value=0.016 Score=58.70 Aligned_cols=27 Identities=22% Similarity=0.602 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.|.++.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998663
No 484
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.72 E-value=0.12 Score=57.80 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.4
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Q 001189 769 PPSDKVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 769 ~~Ge~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
.|..-+.|.||.|+|||+|++++....
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345678899999999999999999865
No 485
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.65 E-value=0.057 Score=55.86 Aligned_cols=44 Identities=27% Similarity=0.430 Sum_probs=31.4
Q ss_pred cCCCEEEEeccccCCCHHHHHHHHHHHHHHcCCcEEEEeecCchh
Q 001189 897 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 941 (1128)
Q Consensus 897 ~~p~iLlLDEpTs~lD~~t~~~i~~~l~~~~~~~Tvi~vtH~l~~ 941 (1128)
.++.+|++||.- .++......+.+.+.+...+..+|++|.+.+.
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 367899999964 46777777788888764445667777776543
No 486
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.64 E-value=0.012 Score=63.67 Aligned_cols=34 Identities=41% Similarity=0.611 Sum_probs=24.3
Q ss_pred eeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 138 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 138 L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 33444455555 88999999999999999998763
No 487
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.63 E-value=0.0061 Score=67.79 Aligned_cols=47 Identities=19% Similarity=0.081 Sum_probs=37.5
Q ss_pred ee-eeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCCceeecCcEEEEecCC
Q 001189 139 LN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 193 (1128)
Q Consensus 139 ~~-isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 193 (1128)
++ ++++.+ |++++++|++|+||||++..|++.+.+..+ ++.++..++
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~-------~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF-------KVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTC-------CEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEecCC
Confidence 45 778776 999999999999999999999998865422 466666654
No 488
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.63 E-value=0.016 Score=61.90 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=24.4
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999999998754
No 489
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.61 E-value=0.017 Score=57.93 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998654
No 490
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.59 E-value=0.016 Score=59.90 Aligned_cols=31 Identities=32% Similarity=0.436 Sum_probs=26.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 806 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~p~~G~I~i~g 806 (1128)
..+|+|+|++||||||+.+.|... |-..+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 457999999999999999999985 6666664
No 491
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.57 E-value=0.023 Score=63.18 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=28.9
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
.+++..+.+ .|.-++|+|+||+||||+...|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 567777777 688999999999999999999987
No 492
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.55 E-value=0.062 Score=63.12 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=28.1
Q ss_pred ceeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Q 001189 760 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 793 (1128)
Q Consensus 760 ~l~~vsl~i~~Ge~v~ivG~~GsGKSTll~~l~g 793 (1128)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4555554589999999999999999999877664
No 493
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.52 E-value=0.0032 Score=72.08 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=35.1
Q ss_pred cEEEEeEEEEeCCCCCCCceeeeeEEeeCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 119 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 119 ~i~~~~~~f~~~~~~~~~~L~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
.+.+.|++..|.. +.++++++|+| +|+|++|+|||||++.|.|...+
T Consensus 17 ~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 17 YVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ----CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred eEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 4778888777752 46788998876 99999999999999999886543
No 494
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.50 E-value=0.048 Score=60.71 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.9
Q ss_pred EEeeCCCEEEEEcCCCccHHHHHHHHhcC
Q 001189 143 LDIPVGSLVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 143 l~i~~G~~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
-.+++|..+.|.||+|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999999999999998754
No 495
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.48 E-value=0.018 Score=59.43 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHhcCC
Q 001189 773 KVGIVGRTGAGKSSMLNTLFRIV 795 (1128)
Q Consensus 773 ~v~ivG~~GsGKSTll~~l~g~~ 795 (1128)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999855
No 496
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.43 E-value=0.019 Score=58.55 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001189 148 GSLVAIVGGTGEGKTSLISAMLGELPP 174 (1128)
Q Consensus 148 G~~~~ivG~~GsGKSTLl~~l~G~~~~ 174 (1128)
-.+++|+|++|||||||++.|++.+++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 358999999999999999999987653
No 497
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.43 E-value=0.02 Score=58.35 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001189 147 VGSLVAIVGGTGEGKTSLISAMLGEL 172 (1128)
Q Consensus 147 ~G~~~~ivG~~GsGKSTLl~~l~G~~ 172 (1128)
+|.+++|.|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999997654
No 498
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.42 E-value=0.019 Score=58.30 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001189 150 LVAIVGGTGEGKTSLISAMLGE 171 (1128)
Q Consensus 150 ~~~ivG~~GsGKSTLl~~l~G~ 171 (1128)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 499
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.41 E-value=0.022 Score=57.51 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Q 001189 771 SDKVGIVGRTGAGKSSMLNTLFRIVE 796 (1128)
Q Consensus 771 Ge~v~ivG~~GsGKSTll~~l~g~~~ 796 (1128)
|..+.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997654
No 500
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.41 E-value=0.0093 Score=64.58 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=25.2
Q ss_pred eeCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001189 145 IPVGSLVAIVGGTGEGKTSLISAMLGELP 173 (1128)
Q Consensus 145 i~~G~~~~ivG~~GsGKSTLl~~l~G~~~ 173 (1128)
.+++.++.|+|++||||||+.+.|...+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34567899999999999999999998764
Done!