Query 001190
Match_columns 1128
No_of_seqs 839 out of 4409
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 18:17:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 4.4E-70 9.4E-75 542.2 35.9 491 5-660 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 2.5E-63 5.5E-68 477.8 32.5 490 4-657 6-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 7.8E-56 1.7E-60 473.5 48.7 572 350-1094 25-621 (775)
4 KOG0319 WD40-repeat-containing 100.0 1.9E-54 4.2E-59 462.8 46.1 539 343-1038 61-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 3.6E-50 7.7E-55 413.2 61.9 566 352-1092 26-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 1E-49 2.2E-54 426.4 64.9 581 348-1092 18-709 (893)
7 KOG0318 WD40 repeat stress pro 100.0 8.2E-50 1.8E-54 410.5 61.5 537 337-1037 52-602 (603)
8 KOG0271 Notchless-like WD40 re 100.0 5.2E-53 1.1E-57 416.6 26.3 375 327-943 98-479 (480)
9 KOG0291 WD40-repeat-containing 100.0 1.3E-48 2.9E-53 417.8 58.8 556 338-1046 49-718 (893)
10 KOG0306 WD40-repeat-containing 100.0 3E-48 6.6E-53 414.9 49.0 575 354-1044 32-671 (888)
11 KOG0306 WD40-repeat-containing 100.0 3.1E-48 6.7E-53 414.9 48.9 518 327-993 47-665 (888)
12 KOG1408 WD40 repeat protein [F 100.0 7.6E-45 1.6E-49 385.1 40.8 617 348-1093 41-714 (1080)
13 KOG0271 Notchless-like WD40 re 100.0 7.9E-46 1.7E-50 365.9 29.9 324 627-1090 113-479 (480)
14 KOG0273 Beta-transducin family 100.0 3E-41 6.5E-46 343.2 36.5 306 332-661 166-484 (524)
15 KOG1539 WD repeat protein [Gen 100.0 6.5E-38 1.4E-42 340.4 56.3 585 350-1092 39-648 (910)
16 KOG1408 WD40 repeat protein [F 100.0 2E-39 4.4E-44 344.0 41.0 553 343-1038 77-714 (1080)
17 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-41 5.6E-46 339.3 23.1 283 341-657 172-458 (459)
18 KOG0276 Vesicle coat complex C 100.0 4.4E-38 9.5E-43 330.0 43.0 475 343-993 12-491 (794)
19 KOG0279 G protein beta subunit 100.0 7.5E-39 1.6E-43 304.6 31.8 292 342-659 13-313 (315)
20 KOG1063 RNA polymerase II elon 100.0 2.2E-37 4.8E-42 329.5 46.0 619 336-1037 45-763 (764)
21 KOG1539 WD repeat protein [Gen 100.0 4E-37 8.6E-42 334.3 48.8 566 342-993 74-649 (910)
22 KOG0272 U4/U6 small nuclear ri 100.0 6.7E-40 1.4E-44 329.2 23.3 284 404-792 173-458 (459)
23 KOG1063 RNA polymerase II elon 100.0 8.2E-37 1.8E-41 325.2 48.0 594 349-1092 19-763 (764)
24 KOG0263 Transcription initiati 100.0 3.4E-38 7.4E-43 343.2 37.2 275 330-617 363-651 (707)
25 KOG0286 G-protein beta subunit 100.0 3.1E-37 6.7E-42 295.3 33.2 292 336-657 46-343 (343)
26 KOG0286 G-protein beta subunit 100.0 2.9E-36 6.4E-41 288.6 31.9 287 400-792 49-343 (343)
27 KOG0276 Vesicle coat complex C 100.0 5.1E-35 1.1E-39 307.1 43.9 464 402-1036 9-489 (794)
28 KOG0292 Vesicle coat complex C 100.0 1.7E-34 3.7E-39 314.4 48.7 550 343-1095 8-597 (1202)
29 KOG0315 G-protein beta subunit 100.0 7.4E-36 1.6E-40 278.9 28.7 283 357-671 10-299 (311)
30 KOG2106 Uncharacterized conser 100.0 8.4E-33 1.8E-37 283.5 50.2 525 412-1036 71-625 (626)
31 KOG0292 Vesicle coat complex C 100.0 1.3E-33 2.8E-38 307.5 46.5 482 402-1046 5-526 (1202)
32 KOG0315 G-protein beta subunit 100.0 8.3E-35 1.8E-39 271.9 31.8 296 508-924 10-309 (311)
33 KOG0279 G protein beta subunit 100.0 5.2E-35 1.1E-39 278.5 30.6 297 761-1093 12-314 (315)
34 KOG0295 WD40 repeat-containing 100.0 1.7E-35 3.7E-40 291.9 26.0 291 335-658 99-405 (406)
35 KOG0284 Polyadenylation factor 100.0 1.7E-35 3.7E-40 295.9 21.3 283 343-659 95-380 (464)
36 KOG0296 Angio-associated migra 100.0 1.7E-33 3.6E-38 278.2 34.5 329 401-903 59-398 (399)
37 KOG0296 Angio-associated migra 100.0 1.6E-33 3.4E-38 278.4 33.9 338 446-945 59-398 (399)
38 KOG0273 Beta-transducin family 100.0 9.9E-34 2.1E-38 288.6 30.4 280 343-659 234-523 (524)
39 KOG0265 U5 snRNP-specific prot 100.0 8.1E-34 1.8E-38 273.2 27.4 288 337-656 40-335 (338)
40 KOG0285 Pleiotropic regulator 100.0 5.1E-34 1.1E-38 280.0 26.2 292 335-660 141-440 (460)
41 KOG0316 Conserved WD40 repeat- 100.0 6.7E-34 1.5E-38 263.5 25.4 289 333-658 5-298 (307)
42 KOG0645 WD40 repeat protein [G 100.0 6.1E-33 1.3E-37 263.2 31.4 286 341-659 11-311 (312)
43 KOG1445 Tumor-specific antigen 100.0 9.5E-32 2E-36 282.1 37.1 640 338-1042 73-849 (1012)
44 KOG0266 WD40 repeat-containing 100.0 8.7E-33 1.9E-37 315.1 32.2 284 343-658 158-453 (456)
45 KOG0281 Beta-TrCP (transducin 100.0 2.7E-34 5.8E-39 280.5 16.4 274 343-662 196-480 (499)
46 KOG2106 Uncharacterized conser 100.0 1.2E-30 2.6E-35 267.7 43.9 525 457-1091 71-625 (626)
47 KOG0285 Pleiotropic regulator 100.0 8.2E-33 1.8E-37 271.6 24.7 246 400-661 145-391 (460)
48 KOG2048 WD40 repeat protein [G 100.0 2.7E-29 5.8E-34 268.1 51.8 546 343-992 24-601 (691)
49 KOG2048 WD40 repeat protein [G 100.0 4.9E-29 1.1E-33 266.1 53.7 548 405-1092 24-601 (691)
50 KOG0295 WD40 repeat-containing 100.0 1.8E-32 3.9E-37 270.6 24.7 247 401-661 103-366 (406)
51 KOG0265 U5 snRNP-specific prot 100.0 7.5E-32 1.6E-36 259.7 27.6 250 400-660 41-297 (338)
52 KOG0293 WD40 repeat-containing 100.0 1.5E-32 3.2E-37 274.8 23.4 290 761-1094 221-515 (519)
53 KOG0263 Transcription initiati 100.0 7.2E-33 1.6E-37 301.8 22.5 275 763-1096 377-653 (707)
54 KOG0645 WD40 repeat protein [G 100.0 3.1E-31 6.8E-36 251.6 30.3 293 761-1092 11-311 (312)
55 KOG0284 Polyadenylation factor 100.0 6.3E-33 1.4E-37 277.6 19.2 284 764-1095 96-383 (464)
56 KOG0266 WD40 repeat-containing 100.0 4.7E-31 1E-35 300.9 32.4 290 763-1092 158-454 (456)
57 KOG0282 mRNA splicing factor [ 100.0 1.4E-32 3.1E-37 281.7 17.1 292 333-657 202-503 (503)
58 cd00200 WD40 WD40 domain, foun 100.0 7.7E-30 1.7E-34 279.6 36.1 282 342-657 7-289 (289)
59 KOG0282 mRNA splicing factor [ 100.0 3.3E-31 7.1E-36 271.7 21.6 287 761-1090 211-503 (503)
60 KOG0275 Conserved WD40 repeat- 100.0 1.8E-31 3.8E-36 258.2 17.1 292 763-1090 212-507 (508)
61 KOG0281 Beta-TrCP (transducin 100.0 8.4E-31 1.8E-35 256.1 20.1 281 763-1096 196-481 (499)
62 PLN00181 protein SPA1-RELATED; 100.0 4.1E-29 8.8E-34 308.4 40.1 291 342-658 481-792 (793)
63 KOG0278 Serine/threonine kinas 100.0 1.1E-30 2.3E-35 244.4 18.4 286 339-661 9-299 (334)
64 KOG0278 Serine/threonine kinas 100.0 1.6E-30 3.4E-35 243.2 17.5 305 761-1115 11-322 (334)
65 KOG0641 WD40 repeat protein [G 100.0 3.3E-28 7.1E-33 223.9 31.7 312 334-659 22-349 (350)
66 KOG0640 mRNA cleavage stimulat 100.0 7.4E-29 1.6E-33 239.1 27.8 310 336-658 104-425 (430)
67 KOG0310 Conserved WD40 repeat- 100.0 5.3E-29 1.2E-33 256.2 27.4 283 343-659 25-309 (487)
68 cd00200 WD40 WD40 domain, foun 100.0 3.5E-28 7.7E-33 266.3 35.5 246 402-661 5-251 (289)
69 KOG0288 WD40 repeat protein Ti 100.0 6.5E-30 1.4E-34 256.7 17.8 294 330-656 160-458 (459)
70 KOG0316 Conserved WD40 repeat- 100.0 8.4E-29 1.8E-33 229.8 23.6 247 399-661 10-259 (307)
71 PLN00181 protein SPA1-RELATED; 100.0 4.5E-28 9.7E-33 299.2 38.0 324 736-1091 458-792 (793)
72 KOG0313 Microtubule binding pr 100.0 1.7E-28 3.7E-33 243.9 26.1 290 332-658 93-417 (423)
73 KOG0973 Histone transcription 100.0 1.1E-28 2.4E-33 279.0 28.1 305 343-661 12-357 (942)
74 KOG0643 Translation initiation 100.0 1.9E-27 4E-32 225.3 26.1 287 338-660 4-318 (327)
75 KOG0274 Cdc4 and related F-box 100.0 2.9E-27 6.3E-32 266.8 30.6 294 327-663 191-486 (537)
76 KOG0643 Translation initiation 100.0 1.2E-26 2.6E-31 219.8 28.6 233 401-649 5-251 (327)
77 KOG0973 Histone transcription 100.0 1.3E-27 2.9E-32 270.3 26.1 305 763-1096 12-359 (942)
78 KOG0647 mRNA export protein (c 100.0 6.9E-27 1.5E-31 225.7 27.1 274 342-648 25-312 (347)
79 KOG1445 Tumor-specific antigen 100.0 1.4E-25 3E-30 236.1 37.9 662 400-1096 73-848 (1012)
80 PTZ00421 coronin; Provisional 100.0 3E-26 6.5E-31 259.1 35.5 287 343-640 19-314 (493)
81 KOG1446 Histone H3 (Lys4) meth 100.0 5.7E-26 1.2E-30 222.3 32.2 290 763-1095 13-306 (311)
82 KOG0283 WD40 repeat-containing 100.0 1.7E-27 3.6E-32 262.8 24.2 300 342-661 265-578 (712)
83 KOG1407 WD40 repeat protein [F 100.0 1.9E-26 4.2E-31 217.8 27.8 274 342-650 18-293 (313)
84 KOG0640 mRNA cleavage stimulat 100.0 3.2E-27 7E-32 227.8 22.0 293 400-792 106-424 (430)
85 KOG0772 Uncharacterized conser 100.0 7E-27 1.5E-31 240.9 25.5 296 763-1094 166-490 (641)
86 KOG0313 Microtubule binding pr 100.0 1.6E-26 3.4E-31 230.0 26.9 283 449-903 103-418 (423)
87 KOG0305 Anaphase promoting com 100.0 2E-26 4.2E-31 248.6 28.4 295 275-617 161-463 (484)
88 KOG0294 WD40 repeat-containing 100.0 5E-26 1.1E-30 221.1 28.0 240 829-1095 41-284 (362)
89 KOG0310 Conserved WD40 repeat- 100.0 1.1E-26 2.4E-31 239.2 24.7 286 763-1095 25-312 (487)
90 KOG0277 Peroxisomal targeting 100.0 1E-26 2.2E-31 218.7 22.1 283 348-658 12-308 (311)
91 KOG1446 Histone H3 (Lys4) meth 100.0 3E-25 6.4E-30 217.2 33.1 281 343-659 13-303 (311)
92 KOG0772 Uncharacterized conser 100.0 3.1E-26 6.7E-31 236.2 25.8 302 333-658 155-486 (641)
93 KOG0299 U3 snoRNP-associated p 99.9 4.7E-26 1E-30 232.7 26.7 287 340-648 138-444 (479)
94 KOG0308 Conserved WD40 repeat- 99.9 2.1E-26 4.4E-31 244.4 23.6 292 343-659 20-327 (735)
95 KOG0288 WD40 repeat protein Ti 99.9 4.9E-27 1.1E-31 236.1 16.7 284 762-1090 173-459 (459)
96 KOG1407 WD40 repeat protein [F 99.9 1.3E-25 2.8E-30 212.3 25.1 275 578-981 14-290 (313)
97 KOG0299 U3 snoRNP-associated p 99.9 7.4E-26 1.6E-30 231.2 24.3 283 402-698 138-446 (479)
98 KOG0305 Anaphase promoting com 99.9 1.5E-25 3.3E-30 241.8 27.8 277 348-661 181-463 (484)
99 KOG0641 WD40 repeat protein [G 99.9 1.9E-24 4.2E-29 199.1 30.9 306 763-1091 31-348 (350)
100 KOG0301 Phospholipase A2-activ 99.9 1.7E-25 3.7E-30 239.5 27.2 283 336-661 5-290 (745)
101 KOG0289 mRNA splicing factor [ 99.9 3.9E-25 8.4E-30 223.7 27.7 283 345-658 220-505 (506)
102 PTZ00420 coronin; Provisional 99.9 1.4E-24 3.1E-29 245.6 35.4 255 363-641 50-318 (568)
103 KOG0283 WD40 repeat-containing 99.9 1.6E-25 3.4E-30 247.3 26.3 273 762-1040 265-579 (712)
104 KOG0308 Conserved WD40 repeat- 99.9 5.6E-26 1.2E-30 241.2 20.9 241 411-661 29-287 (735)
105 PTZ00421 coronin; Provisional 99.9 1.2E-24 2.5E-29 246.2 32.9 271 405-688 19-314 (493)
106 KOG2096 WD40 repeat protein [G 99.9 8.9E-25 1.9E-29 212.1 26.9 302 627-1035 84-400 (420)
107 KOG0277 Peroxisomal targeting 99.9 2.5E-25 5.4E-30 209.5 20.7 253 333-614 49-308 (311)
108 KOG0268 Sof1-like rRNA process 99.9 4.5E-26 9.7E-31 225.2 15.5 283 341-661 63-347 (433)
109 KOG0300 WD40 repeat-containing 99.9 3.1E-25 6.6E-30 214.6 20.8 295 336-661 139-478 (481)
110 KOG0274 Cdc4 and related F-box 99.9 1.3E-24 2.8E-29 245.4 29.4 278 763-1097 207-487 (537)
111 KOG1963 WD40 repeat protein [G 99.9 8E-23 1.7E-27 226.5 41.3 514 449-1100 14-591 (792)
112 KOG1963 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 225.5 42.3 564 409-1095 19-653 (792)
113 KOG0268 Sof1-like rRNA process 99.9 1E-25 2.2E-30 222.6 16.4 241 402-661 62-304 (433)
114 KOG1036 Mitotic spindle checkp 99.9 5.8E-24 1.3E-28 206.9 27.4 268 343-649 12-294 (323)
115 KOG0639 Transducin-like enhanc 99.9 5.3E-24 1.1E-28 218.7 28.0 293 335-658 410-703 (705)
116 KOG0294 WD40 repeat-containing 99.9 5.4E-24 1.2E-28 207.0 26.3 243 401-661 38-283 (362)
117 KOG1274 WD40 repeat protein [G 99.9 1.7E-21 3.8E-26 215.9 49.4 278 341-656 10-297 (933)
118 KOG0647 mRNA export protein (c 99.9 3.9E-24 8.5E-29 206.8 24.6 276 404-697 25-313 (347)
119 KOG2096 WD40 repeat protein [G 99.9 8.3E-24 1.8E-28 205.4 26.4 305 488-902 80-401 (420)
120 PTZ00420 coronin; Provisional 99.9 3.1E-23 6.8E-28 234.9 33.9 251 424-690 50-319 (568)
121 KOG1332 Vesicle coat complex C 99.9 1.2E-24 2.7E-29 203.6 18.2 252 401-659 6-286 (299)
122 KOG0289 mRNA splicing factor [ 99.9 1.3E-23 2.8E-28 212.8 26.5 238 407-657 220-460 (506)
123 KOG0300 WD40 repeat-containing 99.9 1.3E-23 2.8E-28 203.5 23.5 324 446-947 143-478 (481)
124 KOG0639 Transducin-like enhanc 99.9 7.2E-24 1.6E-28 217.6 20.8 282 763-1091 418-703 (705)
125 KOG1273 WD40 repeat protein [G 99.9 6.8E-23 1.5E-27 198.9 24.8 297 332-660 12-323 (405)
126 KOG0646 WD40 repeat protein [G 99.9 3.5E-23 7.5E-28 212.4 23.4 223 406-640 81-330 (476)
127 KOG0301 Phospholipase A2-activ 99.9 4.9E-23 1.1E-27 220.9 25.1 240 400-659 8-249 (745)
128 KOG0264 Nucleosome remodeling 99.9 4.3E-23 9.4E-28 211.7 22.9 267 335-616 115-405 (422)
129 KOG1274 WD40 repeat protein [G 99.9 2.1E-22 4.4E-27 223.2 28.3 283 762-1089 11-297 (933)
130 KOG4283 Transcription-coupled 99.9 5.7E-22 1.2E-26 190.6 25.7 304 338-658 37-364 (397)
131 KOG1332 Vesicle coat complex C 99.9 6.1E-23 1.3E-27 192.4 18.5 252 342-615 9-286 (299)
132 KOG1538 Uncharacterized conser 99.9 5.3E-22 1.2E-26 210.5 27.5 273 346-660 14-294 (1081)
133 KOG2055 WD40 repeat protein [G 99.9 3.5E-22 7.6E-27 204.2 25.2 248 764-1037 257-512 (514)
134 KOG1036 Mitotic spindle checkp 99.9 6E-22 1.3E-26 192.9 25.4 272 405-698 12-295 (323)
135 KOG0646 WD40 repeat protein [G 99.9 1.8E-22 3.9E-27 207.2 21.9 314 514-945 13-350 (476)
136 KOG2055 WD40 repeat protein [G 99.9 4.6E-22 9.9E-27 203.4 24.6 287 344-659 213-512 (514)
137 KOG4328 WD40 protein [Function 99.9 1.3E-21 2.9E-26 199.9 25.4 293 343-659 185-495 (498)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.2E-20 4.8E-25 206.1 37.1 204 836-1046 77-288 (300)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-20 3.5E-25 207.2 35.7 268 359-661 3-281 (300)
140 KOG0267 Microtubule severing p 99.9 1.8E-23 4E-28 224.8 11.0 235 402-650 24-259 (825)
141 KOG1273 WD40 repeat protein [G 99.9 1.7E-21 3.6E-26 189.3 22.6 250 409-670 26-290 (405)
142 KOG0264 Nucleosome remodeling 99.9 2.3E-21 4.9E-26 199.1 22.9 253 402-660 120-405 (422)
143 KOG4283 Transcription-coupled 99.9 3.3E-21 7.2E-26 185.4 22.0 246 761-1036 98-364 (397)
144 KOG0321 WD40 repeat-containing 99.9 3.1E-21 6.7E-26 205.0 22.7 288 776-1094 64-393 (720)
145 KOG0650 WD40 repeat nucleolar 99.9 1.6E-20 3.5E-25 197.8 24.5 280 329-658 384-679 (733)
146 KOG0321 WD40 repeat-containing 99.9 8.5E-21 1.8E-25 201.7 22.6 289 350-661 55-393 (720)
147 KOG1538 Uncharacterized conser 99.9 9.2E-20 2E-24 193.7 30.2 466 453-1087 14-519 (1081)
148 KOG0650 WD40 repeat nucleolar 99.9 1.6E-20 3.5E-25 197.8 22.9 324 398-857 392-732 (733)
149 KOG0267 Microtubule severing p 99.9 7.6E-22 1.6E-26 212.5 10.9 233 342-606 26-259 (825)
150 KOG1009 Chromatin assembly com 99.9 9.9E-20 2.1E-24 183.8 24.9 306 339-661 8-374 (434)
151 KOG0269 WD40 repeat-containing 99.9 5.4E-21 1.2E-25 207.8 16.0 247 347-618 90-343 (839)
152 KOG2445 Nuclear pore complex c 99.9 1.5E-19 3.3E-24 175.6 24.2 255 401-659 8-318 (361)
153 KOG0307 Vesicle coat complex C 99.8 1E-20 2.2E-25 215.7 16.1 297 347-662 9-330 (1049)
154 KOG2445 Nuclear pore complex c 99.8 5.7E-19 1.2E-23 171.7 25.5 253 342-616 11-319 (361)
155 KOG0270 WD40 repeat-containing 99.8 7.4E-20 1.6E-24 186.9 20.2 244 417-666 191-456 (463)
156 KOG4378 Nuclear protein COP1 [ 99.8 7.3E-20 1.6E-24 188.3 19.1 294 733-1079 9-309 (673)
157 KOG0269 WD40 repeat-containing 99.8 1E-19 2.2E-24 198.0 19.2 296 344-661 39-342 (839)
158 KOG1034 Transcriptional repres 99.8 5E-19 1.1E-23 173.6 20.5 300 761-1092 35-383 (385)
159 COG2319 FOG: WD40 repeat [Gene 99.8 4E-16 8.6E-21 182.7 49.3 290 339-661 60-361 (466)
160 COG2319 FOG: WD40 repeat [Gene 99.8 2.2E-16 4.7E-21 184.9 47.0 372 447-946 61-443 (466)
161 KOG1009 Chromatin assembly com 99.8 4.4E-18 9.5E-23 172.0 26.0 300 764-1095 13-375 (434)
162 KOG2919 Guanine nucleotide-bin 99.8 3E-18 6.4E-23 167.6 23.5 287 347-650 52-361 (406)
163 KOG4378 Nuclear protein COP1 [ 99.8 1.8E-18 4E-23 178.2 22.8 290 366-689 11-305 (673)
164 KOG0302 Ribosome Assembly prot 99.8 1.9E-18 4.2E-23 172.5 21.4 265 334-608 141-432 (440)
165 KOG4328 WD40 protein [Function 99.8 3.8E-18 8.2E-23 174.9 23.2 295 763-1091 185-494 (498)
166 KOG1912 WD40 repeat protein [G 99.8 6.5E-17 1.4E-21 175.7 33.7 496 406-1016 15-572 (1062)
167 KOG1034 Transcriptional repres 99.8 2.4E-18 5.2E-23 168.9 20.6 252 399-661 31-339 (385)
168 KOG1912 WD40 repeat protein [G 99.8 1.1E-16 2.3E-21 174.1 35.2 630 343-1044 14-748 (1062)
169 KOG0303 Actin-binding protein 99.8 3.9E-18 8.6E-23 171.2 22.5 247 408-662 29-297 (472)
170 KOG4497 Uncharacterized conser 99.8 1.1E-17 2.4E-22 163.9 24.8 406 411-938 13-425 (447)
171 KOG0270 WD40 repeat-containing 99.8 1.6E-18 3.5E-23 177.2 19.4 255 356-620 192-454 (463)
172 KOG0302 Ribosome Assembly prot 99.8 2.3E-18 4.9E-23 172.1 19.8 253 829-1089 149-435 (440)
173 KOG1524 WD40 repeat-containing 99.8 4.8E-17 1E-21 169.4 29.6 229 404-649 12-246 (737)
174 KOG0307 Vesicle coat complex C 99.8 4.9E-19 1.1E-23 202.2 16.2 280 733-1095 36-330 (1049)
175 KOG2919 Guanine nucleotide-bin 99.8 1.7E-17 3.6E-22 162.4 23.0 284 765-1082 50-360 (406)
176 KOG0649 WD40 repeat protein [G 99.8 7.7E-17 1.7E-21 151.4 25.1 288 766-1090 12-314 (325)
177 KOG0644 Uncharacterized conser 99.8 8.3E-19 1.8E-23 191.7 13.8 279 339-661 185-470 (1113)
178 KOG1334 WD40 repeat protein [G 99.8 1.5E-18 3.2E-23 179.1 14.1 297 338-661 135-468 (559)
179 KOG0303 Actin-binding protein 99.8 1.7E-17 3.6E-22 166.8 20.9 236 400-640 75-320 (472)
180 KOG1524 WD40 repeat-containing 99.8 1.9E-16 4.2E-21 165.0 26.5 270 342-655 12-282 (737)
181 KOG0642 Cell-cycle nuclear pro 99.8 5.7E-18 1.2E-22 178.5 15.1 265 340-625 289-571 (577)
182 KOG4497 Uncharacterized conser 99.8 3.7E-16 8.1E-21 153.2 24.7 379 543-1087 13-427 (447)
183 KOG4227 WD40 repeat protein [G 99.8 1.1E-16 2.3E-21 160.2 21.1 295 339-658 51-386 (609)
184 KOG0322 G-protein beta subunit 99.7 3.6E-17 7.7E-22 155.8 15.9 282 342-658 12-322 (323)
185 KOG1310 WD40 repeat protein [G 99.7 1.8E-16 3.8E-21 165.7 22.4 238 400-666 44-310 (758)
186 KOG0642 Cell-cycle nuclear pro 99.7 1.5E-17 3.3E-22 175.4 13.5 250 401-661 289-563 (577)
187 KOG0649 WD40 repeat protein [G 99.7 1.5E-15 3.2E-20 142.9 25.1 280 346-656 12-313 (325)
188 KOG0322 G-protein beta subunit 99.7 1.9E-16 4.1E-21 150.9 18.3 308 530-944 6-322 (323)
189 KOG0771 Prolactin regulatory e 99.7 1.1E-16 2.4E-21 163.7 16.7 197 876-1093 148-355 (398)
190 KOG0974 WD-repeat protein WDR6 99.7 3.1E-13 6.7E-18 153.8 45.7 150 350-527 139-289 (967)
191 KOG1188 WD40 repeat protein [G 99.7 1.8E-16 3.8E-21 157.0 16.9 291 467-793 42-345 (376)
192 PRK11028 6-phosphogluconolacto 99.7 1.4E-14 3.1E-19 160.7 34.3 272 359-660 4-305 (330)
193 KOG1007 WD repeat protein TSSC 99.7 1.5E-15 3.2E-20 146.6 21.7 256 341-615 60-361 (370)
194 KOG0644 Uncharacterized conser 99.7 3E-17 6.4E-22 179.7 10.9 238 401-662 185-429 (1113)
195 KOG0290 Conserved WD40 repeat- 99.7 6.1E-15 1.3E-19 142.6 24.5 288 338-655 38-361 (364)
196 PRK11028 6-phosphogluconolacto 99.7 1.2E-14 2.5E-19 161.4 30.7 261 327-615 16-304 (330)
197 KOG1517 Guanine nucleotide bin 99.7 2.5E-15 5.5E-20 169.1 25.0 308 449-906 1062-1384(1387)
198 KOG4227 WD40 repeat protein [G 99.7 2.9E-15 6.4E-20 150.0 22.5 297 533-945 51-387 (609)
199 KOG1188 WD40 repeat protein [G 99.7 1.5E-15 3.1E-20 150.6 19.4 273 359-659 42-346 (376)
200 KOG1587 Cytoplasmic dynein int 99.7 7.1E-15 1.5E-19 164.9 26.1 269 327-616 226-517 (555)
201 PRK01742 tolB translocation pr 99.7 4.8E-15 1E-19 169.3 25.2 235 366-640 183-426 (429)
202 KOG1007 WD repeat protein TSSC 99.7 2.9E-15 6.2E-20 144.6 19.0 226 851-1092 39-289 (370)
203 KOG1587 Cytoplasmic dynein int 99.7 1.7E-14 3.6E-19 162.0 27.4 249 405-661 241-518 (555)
204 KOG1240 Protein kinase contain 99.7 1.4E-14 2.9E-19 166.2 26.5 256 401-662 1043-1337(1431)
205 KOG0974 WD-repeat protein WDR6 99.7 7.3E-13 1.6E-17 150.8 39.6 199 346-574 89-290 (967)
206 KOG0290 Conserved WD40 repeat- 99.7 4.7E-14 1E-18 136.5 25.7 241 829-1082 94-356 (364)
207 PF02239 Cytochrom_D1: Cytochr 99.7 1.5E-13 3.2E-18 151.0 32.7 331 511-954 9-356 (369)
208 KOG1517 Guanine nucleotide bin 99.7 2.9E-14 6.3E-19 160.7 27.1 261 765-1040 1110-1384(1387)
209 KOG2110 Uncharacterized conser 99.7 3.1E-13 6.7E-18 135.9 31.1 241 406-661 5-250 (391)
210 KOG2110 Uncharacterized conser 99.7 4.8E-14 1E-18 141.6 24.9 242 830-1095 4-251 (391)
211 KOG1832 HIV-1 Vpr-binding prot 99.6 1.6E-16 3.4E-21 174.7 6.8 215 402-646 1097-1318(1516)
212 KOG1523 Actin-related protein 99.6 3.5E-14 7.7E-19 139.6 21.8 237 343-606 9-269 (361)
213 KOG2041 WD40 repeat protein [G 99.6 4.5E-13 9.8E-18 144.6 31.8 575 341-1038 11-620 (1189)
214 KOG1523 Actin-related protein 99.6 4.9E-14 1.1E-18 138.7 22.1 233 405-648 9-268 (361)
215 PF02239 Cytochrom_D1: Cytochr 99.6 2.8E-13 6.1E-18 148.8 29.9 319 562-1001 14-356 (369)
216 KOG0771 Prolactin regulatory e 99.6 5.9E-15 1.3E-19 151.2 14.7 199 835-1038 148-355 (398)
217 KOG2111 Uncharacterized conser 99.6 1.5E-12 3.3E-17 128.4 30.5 237 408-661 7-258 (346)
218 KOG1240 Protein kinase contain 99.6 6.6E-14 1.4E-18 160.7 24.3 177 480-661 1034-1227(1431)
219 COG4946 Uncharacterized protei 99.6 3E-11 6.4E-16 125.1 40.4 144 763-934 358-507 (668)
220 PRK01742 tolB translocation pr 99.6 8.1E-14 1.8E-18 159.3 22.7 220 338-596 197-426 (429)
221 KOG1334 WD40 repeat protein [G 99.6 2.3E-14 4.9E-19 148.6 15.6 297 761-1095 139-469 (559)
222 KOG2394 WD40 protein DMR-N9 [G 99.6 3.4E-13 7.5E-18 141.6 23.1 246 833-1096 125-456 (636)
223 KOG2139 WD40 repeat protein [G 99.6 1.1E-12 2.3E-17 131.3 24.9 261 763-1037 139-431 (445)
224 PRK03629 tolB translocation pr 99.6 1.4E-12 3.1E-17 148.5 29.6 237 368-639 180-427 (429)
225 COG4946 Uncharacterized protei 99.6 1.8E-10 3.8E-15 119.5 41.1 413 316-892 51-507 (668)
226 PF04762 IKI3: IKI3 family; I 99.6 9.4E-09 2E-13 125.7 62.6 514 405-1092 74-639 (928)
227 KOG2139 WD40 repeat protein [G 99.5 3.2E-12 7E-17 127.9 26.2 283 346-658 100-430 (445)
228 KOG1310 WD40 repeat protein [G 99.5 7.8E-14 1.7E-18 146.3 14.1 239 342-624 48-312 (758)
229 PRK02889 tolB translocation pr 99.5 1.6E-12 3.5E-17 148.3 26.4 225 402-640 191-425 (427)
230 PRK05137 tolB translocation pr 99.5 3.2E-12 6.8E-17 146.9 28.8 222 402-639 197-432 (435)
231 PF04762 IKI3: IKI3 family; I 99.5 7.2E-09 1.6E-13 126.7 58.9 572 343-1044 74-691 (928)
232 PRK03629 tolB translocation pr 99.5 1.7E-12 3.8E-17 147.8 25.3 236 327-595 181-427 (429)
233 KOG2394 WD40 protein DMR-N9 [G 99.5 5.6E-13 1.2E-17 140.0 19.0 118 831-949 290-456 (636)
234 PRK04922 tolB translocation pr 99.5 2.6E-12 5.7E-17 147.3 25.3 238 367-639 184-432 (433)
235 KOG2659 LisH motif-containing 99.5 1.6E-13 3.4E-18 131.6 12.2 171 3-182 24-204 (228)
236 KOG1272 WD40-repeat-containing 99.5 1.4E-13 3E-18 142.0 11.5 286 346-670 131-420 (545)
237 PRK02889 tolB translocation pr 99.5 4E-12 8.7E-17 145.1 24.6 237 327-595 178-424 (427)
238 KOG2111 Uncharacterized conser 99.5 1E-11 2.2E-16 122.7 23.2 237 832-1095 6-259 (346)
239 KOG2315 Predicted translation 99.5 6.3E-11 1.4E-15 126.2 30.7 282 344-661 34-346 (566)
240 KOG1272 WD40-repeat-containing 99.5 3.1E-13 6.6E-18 139.5 13.0 232 406-657 129-360 (545)
241 PRK04922 tolB translocation pr 99.5 4.8E-12 1E-16 145.1 24.4 227 336-595 195-432 (433)
242 KOG2321 WD40 repeat protein [G 99.5 5.1E-12 1.1E-16 133.9 21.6 285 337-660 44-344 (703)
243 COG5354 Uncharacterized protei 99.5 1.9E-11 4.1E-16 128.2 24.9 353 344-786 32-421 (561)
244 PRK05137 tolB translocation pr 99.5 1.1E-11 2.4E-16 142.4 25.6 236 327-595 184-432 (435)
245 KOG2321 WD40 repeat protein [G 99.5 4.9E-12 1.1E-16 134.1 20.2 264 730-1039 68-345 (703)
246 KOG2041 WD40 repeat protein [G 99.4 6.9E-11 1.5E-15 128.1 28.4 548 405-1095 13-622 (1189)
247 KOG2315 Predicted translation 99.4 8.3E-11 1.8E-15 125.3 28.6 354 519-946 12-391 (566)
248 PF10282 Lactonase: Lactonase, 99.4 9E-10 2E-14 122.0 36.7 209 833-1045 88-332 (345)
249 KOG1409 Uncharacterized conser 99.4 1.6E-11 3.6E-16 122.2 19.9 343 575-1038 15-395 (404)
250 COG5354 Uncharacterized protei 99.4 2.4E-10 5.3E-15 120.1 28.3 372 521-981 15-417 (561)
251 KOG3881 Uncharacterized conser 99.4 3.7E-11 8E-16 122.1 21.1 273 343-640 54-342 (412)
252 PF10282 Lactonase: Lactonase, 99.4 6.2E-10 1.3E-14 123.3 32.2 254 831-1099 36-329 (345)
253 KOG1354 Serine/threonine prote 99.4 6E-11 1.3E-15 118.1 20.9 179 829-1043 162-365 (433)
254 COG2706 3-carboxymuconate cycl 99.4 1.7E-09 3.6E-14 110.2 30.8 252 830-1097 38-326 (346)
255 KOG3881 Uncharacterized conser 99.4 6.3E-11 1.4E-15 120.4 20.4 172 779-974 164-342 (412)
256 COG2706 3-carboxymuconate cycl 99.4 1.2E-09 2.6E-14 111.1 29.6 282 735-1043 15-329 (346)
257 PF08662 eIF2A: Eukaryotic tra 99.3 5.2E-11 1.1E-15 118.6 19.0 155 876-1046 9-187 (194)
258 PRK00178 tolB translocation pr 99.3 5E-10 1.1E-14 129.2 29.3 224 402-640 194-428 (430)
259 TIGR02658 TTQ_MADH_Hv methylam 99.3 4.5E-09 9.8E-14 112.4 33.7 203 835-1046 108-339 (352)
260 PRK01029 tolB translocation pr 99.3 3.2E-10 7E-15 128.6 26.2 241 327-596 167-425 (428)
261 PRK04792 tolB translocation pr 99.3 4.9E-10 1.1E-14 128.3 27.9 223 402-639 213-446 (448)
262 PRK04792 tolB translocation pr 99.3 2E-10 4.2E-15 131.5 24.0 225 338-595 211-446 (448)
263 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.5E-09 7.5E-14 113.3 31.6 240 839-1096 53-334 (352)
264 PRK01029 tolB translocation pr 99.3 9.7E-10 2.1E-14 124.7 29.3 226 402-640 180-425 (428)
265 PRK00178 tolB translocation pr 99.3 3.3E-10 7.2E-15 130.7 26.0 236 327-595 181-427 (430)
266 KOG2314 Translation initiation 99.3 2.9E-09 6.4E-14 112.9 30.0 327 540-1037 212-573 (698)
267 TIGR02800 propeller_TolB tol-p 99.3 2.5E-10 5.3E-15 131.9 24.6 223 327-581 172-405 (417)
268 TIGR02800 propeller_TolB tol-p 99.3 5.2E-10 1.1E-14 129.2 27.1 210 402-624 185-405 (417)
269 PF08662 eIF2A: Eukaryotic tra 99.3 2.7E-10 5.8E-15 113.6 20.7 162 410-580 9-186 (194)
270 KOG1409 Uncharacterized conser 99.3 1.3E-10 2.8E-15 115.9 18.0 349 446-904 19-395 (404)
271 KOG1354 Serine/threonine prote 99.3 2E-10 4.4E-15 114.4 19.1 264 342-618 23-362 (433)
272 KOG4547 WD40 repeat-containing 99.2 1.2E-09 2.6E-14 117.8 23.2 190 358-573 6-221 (541)
273 KOG2314 Translation initiation 99.2 8.9E-09 1.9E-13 109.4 28.4 260 811-1092 285-573 (698)
274 KOG4547 WD40 repeat-containing 99.2 6.8E-10 1.5E-14 119.6 20.1 193 415-616 2-221 (541)
275 TIGR03300 assembly_YfgL outer 99.1 2.7E-08 5.9E-13 112.7 28.9 307 508-942 65-376 (377)
276 KOG4190 Uncharacterized conser 99.1 5.7E-10 1.2E-14 117.5 12.7 241 401-658 730-987 (1034)
277 KOG1064 RAVE (regulator of V-A 99.1 5.7E-10 1.2E-14 133.4 13.2 227 338-607 2202-2438(2439)
278 TIGR03300 assembly_YfgL outer 99.1 9.3E-08 2E-12 108.4 30.9 183 467-661 67-261 (377)
279 PLN02919 haloacid dehalogenase 99.1 7.2E-08 1.6E-12 120.7 31.3 258 835-1096 571-892 (1057)
280 KOG1064 RAVE (regulator of V-A 99.0 1.4E-09 3.1E-14 130.1 12.0 201 402-625 2204-2408(2439)
281 KOG0280 Uncharacterized conser 99.0 6.9E-08 1.5E-12 94.9 21.2 271 366-661 45-335 (339)
282 KOG0280 Uncharacterized conser 99.0 7.1E-08 1.5E-12 94.8 20.3 247 343-616 68-334 (339)
283 KOG0309 Conserved WD40 repeat- 99.0 5.8E-09 1.3E-13 114.2 14.1 270 337-616 17-340 (1081)
284 KOG3617 WD40 and TPR repeat-co 99.0 7.9E-08 1.7E-12 107.0 21.8 115 340-481 10-129 (1416)
285 PRK04043 tolB translocation pr 98.9 2.7E-07 5.7E-12 104.0 26.0 214 327-573 171-401 (419)
286 PLN02919 haloacid dehalogenase 98.9 7.4E-07 1.6E-11 111.8 31.7 245 410-661 571-890 (1057)
287 KOG4190 Uncharacterized conser 98.9 2.3E-09 5.1E-14 113.0 7.5 219 865-1104 728-960 (1034)
288 KOG3617 WD40 and TPR repeat-co 98.9 2.7E-07 5.9E-12 102.8 23.6 566 409-1114 18-608 (1416)
289 PF15492 Nbas_N: Neuroblastoma 98.9 1.4E-06 3E-11 86.5 25.5 236 836-1101 2-270 (282)
290 PF13360 PQQ_2: PQQ-like domai 98.9 7.1E-07 1.5E-11 94.1 24.7 225 851-1099 2-237 (238)
291 PF07433 DUF1513: Protein of u 98.8 9.5E-07 2.1E-11 90.9 23.8 185 836-1030 55-278 (305)
292 COG5170 CDC55 Serine/threonine 98.8 7.4E-08 1.6E-12 95.0 14.7 249 405-670 25-320 (460)
293 PF15492 Nbas_N: Neuroblastoma 98.8 4.9E-06 1.1E-10 82.8 26.0 231 412-661 3-261 (282)
294 KOG3914 WD repeat protein WDR4 98.8 5.3E-08 1.1E-12 100.3 12.8 164 346-535 64-232 (390)
295 PRK04043 tolB translocation pr 98.8 4.3E-06 9.4E-11 94.3 28.2 198 408-618 189-403 (419)
296 PF08450 SGL: SMP-30/Gluconola 98.7 1.2E-05 2.6E-10 84.9 29.7 219 835-1080 3-244 (246)
297 KOG1897 Damage-specific DNA bi 98.7 0.0014 3E-08 76.3 53.1 600 340-992 302-942 (1096)
298 PRK11138 outer membrane biogen 98.7 5.8E-06 1.2E-10 94.1 29.0 309 509-944 70-393 (394)
299 PF07433 DUF1513: Protein of u 98.7 1.1E-05 2.3E-10 83.3 26.7 211 831-1046 4-256 (305)
300 COG5170 CDC55 Serine/threonine 98.7 3.1E-07 6.7E-12 90.7 14.5 183 765-948 86-312 (460)
301 PRK11138 outer membrane biogen 98.7 1.1E-05 2.3E-10 91.9 29.7 188 467-662 71-277 (394)
302 KOG0882 Cyclophilin-related pe 98.7 1.4E-06 2.9E-11 90.9 18.7 256 342-624 7-314 (558)
303 KOG3914 WD repeat protein WDR4 98.7 3.5E-07 7.6E-12 94.4 13.9 159 917-1096 64-227 (390)
304 KOG4532 WD40-like repeat conta 98.6 5.2E-06 1.1E-10 80.8 19.5 177 360-557 131-321 (344)
305 PF08450 SGL: SMP-30/Gluconola 98.6 3E-05 6.4E-10 81.9 27.4 218 411-648 4-244 (246)
306 KOG4532 WD40-like repeat conta 98.6 5.7E-06 1.2E-10 80.5 19.3 223 417-649 83-322 (344)
307 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00021 4.6E-09 69.7 29.0 137 509-654 24-160 (354)
308 KOG1275 PAB-dependent poly(A) 98.6 7.6E-07 1.7E-11 100.8 14.5 181 842-1035 146-340 (1118)
309 KOG1645 RING-finger-containing 98.6 7.7E-06 1.7E-10 84.4 20.3 248 401-659 188-461 (463)
310 KOG0396 Uncharacterized conser 98.5 1.1E-06 2.3E-11 89.9 13.1 173 5-190 115-299 (389)
311 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00034 7.4E-09 68.3 28.6 116 352-493 18-134 (354)
312 KOG1897 Damage-specific DNA bi 98.5 0.0063 1.4E-07 71.1 57.2 621 347-1092 260-942 (1096)
313 PF13360 PQQ_2: PQQ-like domai 98.5 2.9E-05 6.3E-10 81.8 24.0 220 427-664 2-235 (238)
314 KOG0309 Conserved WD40 repeat- 98.5 7.6E-07 1.7E-11 98.1 10.9 222 327-573 95-340 (1081)
315 KOG4714 Nucleoporin [Nuclear s 98.5 4.8E-06 1E-10 80.8 14.7 207 347-573 39-255 (319)
316 KOG1920 IkappaB kinase complex 98.4 3E-05 6.5E-10 91.5 23.8 274 764-1092 68-365 (1265)
317 KOG1645 RING-finger-containing 98.4 8.1E-06 1.7E-10 84.3 16.7 245 830-1093 192-462 (463)
318 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.0002 4.3E-09 79.9 29.4 296 353-695 1-345 (353)
319 PRK02888 nitrous-oxide reducta 98.4 2.1E-05 4.5E-10 88.9 20.9 182 838-1038 199-405 (635)
320 PRK02888 nitrous-oxide reducta 98.4 4.2E-05 9.1E-10 86.4 23.1 138 839-981 284-449 (635)
321 PF10607 CLTH: CTLH/CRA C-term 98.4 9.8E-07 2.1E-11 84.0 8.7 134 38-182 5-141 (145)
322 KOG2695 WD40 repeat protein [G 98.4 9.1E-07 2E-11 89.1 8.6 162 351-537 218-387 (425)
323 KOG3621 WD40 repeat-containing 98.4 5.2E-05 1.1E-09 84.5 22.6 284 343-663 32-357 (726)
324 KOG1832 HIV-1 Vpr-binding prot 98.4 3.2E-07 6.9E-12 102.9 5.6 200 863-1096 1092-1295(1516)
325 PF00400 WD40: WD domain, G-be 98.4 7.3E-07 1.6E-11 62.5 5.4 39 905-943 1-39 (39)
326 KOG1920 IkappaB kinase complex 98.4 0.00011 2.5E-09 86.8 25.7 277 345-658 69-364 (1265)
327 PF06433 Me-amine-dh_H: Methyl 98.3 0.00019 4E-09 75.2 24.2 206 834-1047 97-330 (342)
328 KOG2695 WD40 repeat protein [G 98.3 1.9E-06 4.1E-11 86.8 9.0 164 456-627 216-388 (425)
329 KOG2066 Vacuolar assembly/sort 98.3 1.2E-05 2.5E-10 90.7 15.9 190 872-1092 39-233 (846)
330 KOG2114 Vacuolar assembly/sort 98.3 4.1E-05 8.8E-10 87.0 20.0 199 879-1095 30-246 (933)
331 KOG4714 Nucleoporin [Nuclear s 98.3 5.6E-06 1.2E-10 80.3 10.9 198 875-1093 39-255 (319)
332 PF06433 Me-amine-dh_H: Methyl 98.3 0.00068 1.5E-08 71.1 26.9 245 834-1096 38-324 (342)
333 KOG0882 Cyclophilin-related pe 98.3 7.4E-06 1.6E-10 85.6 12.2 213 871-1096 8-235 (558)
334 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00032 7E-09 78.2 25.7 301 594-981 1-345 (353)
335 KOG2114 Vacuolar assembly/sort 98.2 0.00021 4.6E-09 81.4 23.2 204 351-585 30-257 (933)
336 PF00400 WD40: WD domain, G-be 98.2 5.8E-06 1.3E-10 57.9 6.4 39 862-901 1-39 (39)
337 cd00216 PQQ_DH Dehydrogenases 98.2 0.0019 4.1E-08 75.4 30.5 159 877-1046 221-433 (488)
338 KOG3621 WD40 repeat-containing 98.2 0.00018 3.8E-09 80.4 20.3 280 763-1094 32-355 (726)
339 cd00216 PQQ_DH Dehydrogenases 98.1 0.0007 1.5E-08 78.9 26.4 243 844-1102 111-434 (488)
340 KOG2066 Vacuolar assembly/sort 98.1 0.00024 5.3E-09 80.4 19.8 178 776-992 49-233 (846)
341 PF08513 LisH: LisH; InterPro 98.1 5.5E-06 1.2E-10 51.1 3.9 27 6-32 1-27 (27)
342 PF14583 Pectate_lyase22: Olig 98.0 0.011 2.5E-07 63.4 29.8 82 545-628 42-123 (386)
343 PF04053 Coatomer_WDAD: Coatom 98.0 0.00062 1.4E-08 76.5 21.4 218 831-1092 32-262 (443)
344 PF02897 Peptidase_S9_N: Proly 97.9 0.0076 1.7E-07 69.3 29.8 248 347-621 126-410 (414)
345 PF04053 Coatomer_WDAD: Coatom 97.9 0.0021 4.5E-08 72.4 24.0 225 402-661 28-264 (443)
346 PF11768 DUF3312: Protein of u 97.9 0.0033 7.1E-08 69.8 24.6 115 965-1094 207-331 (545)
347 smart00668 CTLH C-terminal to 97.9 8.9E-06 1.9E-10 63.0 2.8 52 38-90 5-56 (58)
348 KOG1275 PAB-dependent poly(A) 97.9 0.0003 6.6E-09 80.5 15.7 183 467-657 149-340 (1118)
349 PF08596 Lgl_C: Lethal giant l 97.9 0.0045 9.8E-08 68.8 24.9 252 346-604 3-325 (395)
350 PF11768 DUF3312: Protein of u 97.9 0.00093 2E-08 73.9 19.0 124 335-481 196-327 (545)
351 smart00667 LisH Lissencephaly 97.8 2.5E-05 5.4E-10 52.6 4.3 32 4-35 2-33 (34)
352 COG0823 TolB Periplasmic compo 97.8 0.0021 4.6E-08 72.1 21.8 202 476-693 174-385 (425)
353 KOG1008 Uncharacterized conser 97.8 1.7E-05 3.7E-10 86.9 4.9 252 831-1092 56-335 (783)
354 PF04841 Vps16_N: Vps16, N-ter 97.8 0.01 2.2E-07 67.0 27.2 198 837-1046 34-255 (410)
355 COG0823 TolB Periplasmic compo 97.8 0.0013 2.7E-08 73.9 19.5 204 327-558 175-389 (425)
356 PF14583 Pectate_lyase22: Olig 97.8 0.0055 1.2E-07 65.8 22.6 291 768-1092 39-381 (386)
357 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.07 1.5E-06 62.5 34.1 109 509-625 70-199 (527)
358 PF08596 Lgl_C: Lethal giant l 97.7 0.0098 2.1E-07 66.1 24.9 241 408-658 3-334 (395)
359 KOG1008 Uncharacterized conser 97.7 1.7E-05 3.7E-10 86.8 2.5 204 344-572 56-275 (783)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.11 2.3E-06 61.0 32.9 148 896-1047 272-500 (527)
361 COG3490 Uncharacterized protei 97.6 0.025 5.5E-07 56.7 22.4 239 832-1090 68-346 (366)
362 COG3386 Gluconolactonase [Carb 97.6 0.017 3.7E-07 61.7 23.4 219 837-1079 30-272 (307)
363 COG3391 Uncharacterized conser 97.6 0.017 3.7E-07 64.9 24.4 209 833-1048 75-294 (381)
364 PF06977 SdiA-regulated: SdiA- 97.6 0.022 4.7E-07 58.6 22.7 201 830-1034 20-247 (248)
365 PF06977 SdiA-regulated: SdiA- 97.6 0.012 2.5E-07 60.6 20.4 191 343-556 20-239 (248)
366 PRK13616 lipoprotein LpqB; Pro 97.5 0.012 2.6E-07 69.2 22.7 212 872-1104 349-580 (591)
367 KOG2817 Predicted E3 ubiquitin 97.5 0.00064 1.4E-08 71.3 10.8 113 5-118 116-240 (394)
368 PF00780 CNH: CNH domain; Int 97.5 0.028 6.2E-07 60.4 24.4 234 774-1046 5-264 (275)
369 PF02897 Peptidase_S9_N: Proly 97.5 0.062 1.3E-06 61.8 28.6 243 834-1096 126-408 (414)
370 PF03178 CPSF_A: CPSF A subuni 97.5 0.01 2.3E-07 65.3 21.2 175 852-1037 2-202 (321)
371 PRK13616 lipoprotein LpqB; Pro 97.5 0.0063 1.4E-07 71.5 19.5 189 832-1031 350-562 (591)
372 COG3391 Uncharacterized conser 97.5 0.069 1.5E-06 60.1 27.1 242 833-1095 32-286 (381)
373 PF08553 VID27: VID27 cytoplas 97.5 0.011 2.4E-07 70.2 21.2 147 884-1037 492-647 (794)
374 PF04841 Vps16_N: Vps16, N-ter 97.4 0.16 3.4E-06 57.6 28.5 167 476-658 62-245 (410)
375 PF00780 CNH: CNH domain; Int 97.3 0.06 1.3E-06 57.9 24.1 224 841-1096 5-259 (275)
376 PF05096 Glu_cyclase_2: Glutam 97.3 0.038 8.3E-07 56.3 19.9 197 833-1080 46-249 (264)
377 COG3386 Gluconolactonase [Carb 97.3 0.08 1.7E-06 56.7 23.5 221 351-604 31-274 (307)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.064 1.4E-06 59.4 22.9 82 540-625 309-408 (415)
379 COG3490 Uncharacterized protei 97.1 0.02 4.4E-07 57.3 15.1 191 837-1035 119-346 (366)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.16 3.5E-06 56.4 23.7 88 836-924 6-117 (415)
381 PHA02713 hypothetical protein; 97.0 0.035 7.6E-07 65.7 18.9 228 853-1109 273-548 (557)
382 KOG2395 Protein involved in va 96.9 0.023 5E-07 61.9 15.2 139 422-572 350-500 (644)
383 PF03178 CPSF_A: CPSF A subuni 96.9 0.11 2.3E-06 57.3 21.0 216 367-611 2-261 (321)
384 PF14870 PSII_BNR: Photosynthe 96.9 0.72 1.6E-05 49.1 25.9 159 870-1034 142-301 (302)
385 KOG4640 Anaphase-promoting com 96.9 0.0042 9.1E-08 69.0 9.4 94 344-460 20-114 (665)
386 KOG4640 Anaphase-promoting com 96.8 0.0049 1.1E-07 68.4 9.0 94 872-972 20-114 (665)
387 PRK10115 protease 2; Provision 96.8 2.2 4.8E-05 52.1 33.5 242 407-661 127-396 (686)
388 smart00320 WD40 WD40 repeats. 96.7 0.003 6.5E-08 43.3 4.7 38 906-943 3-40 (40)
389 PRK10115 protease 2; Provision 96.7 2.6 5.6E-05 51.4 32.4 241 346-618 128-397 (686)
390 KOG2395 Protein involved in va 96.6 0.037 8E-07 60.4 13.9 146 887-1037 348-500 (644)
391 PF07995 GSDH: Glucose / Sorbo 96.6 1.5 3.2E-05 48.3 27.2 58 597-654 271-330 (331)
392 PF10647 Gmad1: Lipoprotein Lp 96.6 0.55 1.2E-05 49.3 22.5 149 874-1029 25-187 (253)
393 PF05096 Glu_cyclase_2: Glutam 96.6 0.62 1.4E-05 47.8 21.5 201 763-991 43-258 (264)
394 KOG1898 Splicing factor 3b, su 96.5 2.9 6.3E-05 50.4 37.3 174 853-1037 854-1048(1205)
395 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.09 1.9E-06 45.5 12.7 102 347-478 2-109 (111)
396 PF05694 SBP56: 56kDa selenium 96.5 0.28 6E-06 53.5 19.3 237 775-1026 86-392 (461)
397 KOG4499 Ca2+-binding protein R 96.4 0.7 1.5E-05 45.3 19.5 101 768-882 161-263 (310)
398 smart00320 WD40 WD40 repeats. 96.4 0.0098 2.1E-07 40.6 5.7 39 862-901 2-40 (40)
399 KOG3630 Nuclear pore complex, 96.2 0.051 1.1E-06 64.8 13.2 249 830-1119 99-363 (1405)
400 KOG4441 Proteins containing BT 96.2 0.31 6.6E-06 57.7 20.0 234 841-1103 283-555 (571)
401 PF15390 DUF4613: Domain of un 96.2 3 6.5E-05 47.2 26.5 126 341-484 53-187 (671)
402 PF10647 Gmad1: Lipoprotein Lp 96.2 0.69 1.5E-05 48.5 20.7 146 832-982 24-184 (253)
403 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.23 5E-06 43.1 13.7 103 497-610 2-109 (111)
404 PF08553 VID27: VID27 cytoplas 96.2 0.13 2.8E-06 61.5 16.5 141 467-614 496-646 (794)
405 PF07995 GSDH: Glucose / Sorbo 96.1 2.8 6.1E-05 46.1 27.7 242 834-1087 4-330 (331)
406 PRK13684 Ycf48-like protein; P 96.1 2.8 6.1E-05 46.1 26.8 157 872-1036 172-330 (334)
407 PF14727 PHTB1_N: PTHB1 N-term 96.1 3.2 6.9E-05 46.5 33.6 277 353-661 33-362 (418)
408 COG3823 Glutamine cyclotransfe 96.0 0.49 1.1E-05 45.5 15.8 191 842-1081 55-248 (262)
409 KOG2079 Vacuolar assembly/sort 95.9 0.023 4.9E-07 67.3 8.5 98 359-481 101-201 (1206)
410 PF14727 PHTB1_N: PTHB1 N-term 95.9 3.9 8.4E-05 45.8 29.4 279 776-1093 37-361 (418)
411 TIGR03074 PQQ_membr_DH membran 95.8 2 4.3E-05 52.5 24.4 240 842-1101 194-486 (764)
412 KOG2079 Vacuolar assembly/sort 95.8 0.1 2.3E-06 62.1 13.0 103 417-525 98-202 (1206)
413 KOG4441 Proteins containing BT 95.8 0.77 1.7E-05 54.3 20.6 232 417-660 284-547 (571)
414 PF05694 SBP56: 56kDa selenium 95.7 2.1 4.5E-05 47.0 21.4 206 355-574 86-344 (461)
415 PF12894 Apc4_WD40: Anaphase-p 95.7 0.029 6.3E-07 40.3 5.2 35 343-379 10-44 (47)
416 COG3204 Uncharacterized protei 95.6 0.89 1.9E-05 46.7 17.1 171 911-1093 81-264 (316)
417 PF12894 Apc4_WD40: Anaphase-p 95.6 0.042 9E-07 39.5 5.7 34 405-439 10-43 (47)
418 PF02333 Phytase: Phytase; In 95.4 2.8 6E-05 45.9 21.2 188 467-661 70-292 (381)
419 TIGR03074 PQQ_membr_DH membran 95.3 3.7 8.1E-05 50.1 24.1 157 467-624 262-486 (764)
420 PHA02713 hypothetical protein; 95.2 0.63 1.4E-05 55.2 17.4 185 841-1041 302-537 (557)
421 KOG2377 Uncharacterized conser 95.2 1.2 2.6E-05 48.2 17.0 135 327-481 47-183 (657)
422 KOG2444 WD40 repeat protein [G 95.2 0.053 1.1E-06 53.0 6.6 103 844-946 71-178 (238)
423 KOG2444 WD40 repeat protein [G 95.1 0.063 1.4E-06 52.5 7.0 107 930-1046 33-141 (238)
424 COG4590 ABC-type uncharacteriz 95.1 0.24 5.2E-06 53.1 11.7 160 830-997 219-391 (733)
425 KOG4499 Ca2+-binding protein R 95.0 3.4 7.4E-05 40.8 17.9 137 451-596 108-264 (310)
426 KOG3630 Nuclear pore complex, 94.9 0.71 1.5E-05 55.7 16.0 143 917-1072 102-254 (1405)
427 PF15390 DUF4613: Domain of un 94.9 0.62 1.3E-05 52.3 14.5 156 873-1039 20-188 (671)
428 COG3292 Predicted periplasmic 94.7 8.5 0.00019 43.5 22.3 311 343-693 163-479 (671)
429 PF14870 PSII_BNR: Photosynthe 94.7 7.4 0.00016 41.6 29.8 233 833-1089 63-301 (302)
430 KOG2280 Vacuolar assembly/sort 94.3 6.2 0.00013 46.1 20.8 223 327-583 27-257 (829)
431 PRK13684 Ycf48-like protein; P 94.3 10 0.00023 41.7 30.9 279 343-657 44-329 (334)
432 TIGR02604 Piru_Ver_Nterm putat 94.1 11 0.00024 42.3 23.2 139 832-981 14-201 (367)
433 KOG1916 Nuclear protein, conta 94.1 0.04 8.7E-07 63.8 3.5 199 830-1036 131-373 (1283)
434 PHA03098 kelch-like protein; P 94.1 1.6 3.4E-05 52.2 17.4 194 884-1103 294-520 (534)
435 PHA03098 kelch-like protein; P 93.9 1.4 3E-05 52.7 16.5 187 841-1041 293-515 (534)
436 PF12234 Rav1p_C: RAVE protein 93.9 2 4.3E-05 50.3 16.5 119 871-991 28-155 (631)
437 COG3204 Uncharacterized protei 93.8 9.3 0.0002 39.6 22.1 162 402-572 81-263 (316)
438 PF10168 Nup88: Nuclear pore c 93.7 16 0.00036 44.3 24.4 95 830-947 83-181 (717)
439 TIGR03118 PEPCTERM_chp_1 conse 93.7 10 0.00022 39.6 21.9 260 632-925 25-307 (336)
440 PHA02790 Kelch-like protein; P 93.3 2.8 6E-05 49.0 17.0 183 842-1040 271-473 (480)
441 COG1520 FOG: WD40-like repeat 93.2 3.9 8.5E-05 46.0 17.7 205 888-1103 71-279 (370)
442 PF10168 Nup88: Nuclear pore c 93.1 1.8 4E-05 52.2 15.2 92 1007-1102 84-189 (717)
443 PF12234 Rav1p_C: RAVE protein 93.0 2.1 4.6E-05 50.1 15.0 110 454-571 32-155 (631)
444 PLN00033 photosystem II stabil 93.0 18 0.0004 40.5 26.9 153 875-1034 241-396 (398)
445 KOG4460 Nuclear pore complex, 92.9 1.1 2.4E-05 49.3 11.5 102 1007-1111 103-218 (741)
446 PF11725 AvrE: Pathogenicity f 92.8 14 0.00031 47.5 22.2 148 343-527 361-517 (1774)
447 COG3292 Predicted periplasmic 92.5 23 0.00049 40.3 24.0 139 405-555 163-306 (671)
448 KOG2280 Vacuolar assembly/sort 92.5 9.5 0.00021 44.6 18.6 181 853-1046 65-255 (829)
449 TIGR03118 PEPCTERM_chp_1 conse 92.2 17 0.00037 38.1 23.2 204 453-662 24-282 (336)
450 COG4257 Vgb Streptogramin lyas 92.1 15 0.00033 37.5 22.8 237 830-1097 60-310 (353)
451 COG1520 FOG: WD40-like repeat 92.1 24 0.00052 39.7 23.0 202 839-1047 65-278 (370)
452 KOG1900 Nuclear pore complex, 92.1 5.9 0.00013 49.4 17.5 150 892-1041 96-277 (1311)
453 KOG2247 WD40 repeat-containing 92.1 0.047 1E-06 59.1 0.3 244 767-1046 37-289 (615)
454 smart00036 CNH Domain found in 92.0 21 0.00045 38.7 24.4 209 830-1046 41-279 (302)
455 TIGR02604 Piru_Ver_Nterm putat 91.8 4.3 9.4E-05 45.5 15.6 108 345-471 14-142 (367)
456 PF05935 Arylsulfotrans: Aryls 91.7 3.9 8.5E-05 47.5 15.4 48 1058-1105 267-314 (477)
457 PF14781 BBS2_N: Ciliary BBSom 91.7 6.9 0.00015 35.4 13.1 118 922-1046 5-134 (136)
458 KOG1916 Nuclear protein, conta 91.6 0.41 8.8E-06 56.0 6.9 126 343-494 131-282 (1283)
459 PF14761 HPS3_N: Hermansky-Pud 91.6 6.3 0.00014 39.1 14.0 154 928-1092 29-214 (215)
460 PHA02790 Kelch-like protein; P 91.4 7.1 0.00015 45.6 17.3 188 884-1100 271-476 (480)
461 PF10313 DUF2415: Uncharacteri 91.4 0.61 1.3E-05 32.5 4.9 33 345-377 1-35 (43)
462 KOG1898 Splicing factor 3b, su 91.1 46 0.001 40.9 33.9 103 837-944 939-1047(1205)
463 COG4257 Vgb Streptogramin lyas 91.0 20 0.00044 36.6 18.2 196 874-1100 63-268 (353)
464 PF10313 DUF2415: Uncharacteri 90.4 0.86 1.9E-05 31.7 4.9 32 407-438 1-35 (43)
465 KOG2377 Uncharacterized conser 90.4 32 0.00069 37.9 21.5 154 834-995 25-188 (657)
466 PF13449 Phytase-like: Esteras 90.2 33 0.00071 37.7 22.4 164 872-1037 19-249 (326)
467 PF14761 HPS3_N: Hermansky-Pud 90.0 8.8 0.00019 38.1 13.4 49 598-649 29-79 (215)
468 PF10433 MMS1_N: Mono-function 89.9 47 0.001 39.2 34.7 391 350-882 49-503 (504)
469 PF14781 BBS2_N: Ciliary BBSom 89.5 12 0.00025 34.0 12.5 118 349-487 3-129 (136)
470 COG5290 IkappaB kinase complex 89.4 52 0.0011 39.0 20.8 58 831-888 295-352 (1243)
471 cd08044 TAF5_NTD2 TAF5_NTD2 is 89.1 1 2.2E-05 41.7 6.2 60 71-130 28-87 (133)
472 KOG1900 Nuclear pore complex, 88.5 3.8 8.3E-05 50.9 11.9 169 331-527 65-273 (1311)
473 KOG2247 WD40 repeat-containing 88.4 0.25 5.4E-06 53.8 1.8 127 335-486 65-191 (615)
474 KOG4659 Uncharacterized conser 88.4 82 0.0018 39.8 31.7 23 763-785 660-682 (1899)
475 PF07676 PD40: WD40-like Beta 88.3 1.7 3.7E-05 29.8 5.5 31 342-372 6-38 (39)
476 PF12657 TFIIIC_delta: Transcr 88.3 3.1 6.6E-05 40.7 9.3 31 407-437 86-122 (173)
477 COG5290 IkappaB kinase complex 88.2 21 0.00045 42.0 16.5 130 964-1108 247-382 (1243)
478 TIGR03606 non_repeat_PQQ dehyd 88.1 40 0.00086 38.5 18.9 111 872-983 29-165 (454)
479 PF08728 CRT10: CRT10; InterP 87.5 22 0.00047 42.5 16.8 111 832-944 101-245 (717)
480 TIGR03606 non_repeat_PQQ dehyd 87.5 59 0.0013 37.2 30.2 64 342-418 27-90 (454)
481 PF09862 DUF2089: Protein of u 87.2 4.4 9.6E-05 35.5 8.3 80 2-98 32-113 (113)
482 TIGR03548 mutarot_permut cycli 86.7 54 0.0012 36.0 21.3 111 926-1041 72-198 (323)
483 PF04494 TFIID_90kDa: WD40 ass 86.7 0.9 2E-05 42.5 4.3 53 72-124 40-92 (142)
484 PF13449 Phytase-like: Esteras 86.3 40 0.00087 37.0 17.7 173 763-945 18-249 (326)
485 KOG1983 Tomosyn and related SN 86.1 27 0.00059 44.4 17.9 233 830-1096 34-268 (993)
486 PF10214 Rrn6: RNA polymerase 86.0 91 0.002 39.0 22.4 238 843-1095 6-279 (765)
487 PF07569 Hira: TUP1-like enhan 85.9 2.5 5.5E-05 43.0 7.5 73 923-995 18-98 (219)
488 COG5167 VID27 Protein involved 84.9 14 0.00031 41.0 12.5 150 878-1037 472-632 (776)
489 PLN02153 epithiospecifier prot 84.7 70 0.0015 35.5 20.3 23 926-948 85-112 (341)
490 PF08728 CRT10: CRT10; InterP 84.5 6.2 0.00013 46.9 10.5 135 347-481 103-244 (717)
491 PF07569 Hira: TUP1-like enhan 84.4 5.1 0.00011 40.8 8.8 81 352-439 18-98 (219)
492 COG5167 VID27 Protein involved 84.2 33 0.00072 38.3 14.8 151 454-614 469-631 (776)
493 PF12657 TFIIIC_delta: Transcr 83.9 9.6 0.00021 37.2 10.3 39 1063-1101 87-131 (173)
494 KOG1983 Tomosyn and related SN 83.3 23 0.00049 45.1 15.5 72 537-619 197-268 (993)
495 PF03022 MRJP: Major royal jel 83.3 69 0.0015 34.3 20.0 166 476-647 35-253 (287)
496 COG3823 Glutamine cyclotransfe 83.0 34 0.00074 33.6 12.7 136 842-982 101-247 (262)
497 PLN02153 epithiospecifier prot 82.8 83 0.0018 34.9 19.9 193 842-1041 32-288 (341)
498 COG4590 ABC-type uncharacteriz 82.8 5.3 0.00011 43.4 8.2 171 863-1041 211-390 (733)
499 KOG3616 Selective LIM binding 82.7 1.1E+02 0.0023 36.1 20.4 418 435-994 2-447 (1636)
500 PLN02193 nitrile-specifier pro 82.4 1.1E+02 0.0023 35.8 21.8 164 926-1104 228-420 (470)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-70 Score=542.21 Aligned_cols=491 Identities=21% Similarity=0.305 Sum_probs=415.3
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC---HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHHHHhHH
Q 001190 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN---MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1128)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1128)
+.|++|++.|+|+.+||.+|+.+||.|+|+.+. ...|.++++.|+|++++..+..+...++.+... +.|+++||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~e-a~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKE-AMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhHH-HHHHHHHHHH
Confidence 569999999999999999999999999999885 899999999999999999999886555444444 9999999999
Q ss_pred hHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCCchHHHHHHHHHHHhhcccCccccccc
Q 001190 82 LEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKL 161 (1128)
Q Consensus 82 ~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~ 161 (1128)
||++..+...+|+.+||+++.++ ..+.+++++|+.-|..++.....+..........|.+|+++|++.|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 99999999999999999999988 568999999988766543332222111122456799999999999999998
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q 001190 162 AFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPPT 241 (1128)
Q Consensus 162 ~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1128)
+|++||++||+||+++|+..|.||| +.+..|||.||.|.+.+ +|+ .+.+++..
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~~q--------------ip~-qt~qil~~------- 222 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGRLQ--------------IPS-QTWQILQD------- 222 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCccc--------------CCc-hhhhhHhh-------
Confidence 9999999999999999999999999 57779999999999976 554 23333333
Q ss_pred ccccchhhhhhhhccCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCcccCCCChHHHhhhcCCCCCCCccccc
Q 001190 242 AAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYS 321 (1128)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1128)
T Consensus 223 -------------------------------------------------------------------------------- 222 (519)
T KOG0293|consen 223 -------------------------------------------------------------------------------- 222 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCcccccee
Q 001190 322 SSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401 (1128)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1128)
|.++||-+.||++|+ +||+++.|.+..||++.....+. ..++
T Consensus 223 ---------------------htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k----------------l~~t 264 (519)
T KOG0293|consen 223 ---------------------HTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK----------------LKKT 264 (519)
T ss_pred ---------------------CCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCccee----------------eeee
Confidence 556788888899999 78999999999999986654421 1245
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+.||..+|..+.||||.++|++|+.|..+.+||+.+|+....+. .+|...+.+++|.|||. .+++|+.|+++..||
T Consensus 265 lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 265 LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWD 340 (519)
T ss_pred eecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEec
Confidence 89999999999999999999999999999999999999876432 24678999999999999 799999999999999
Q ss_pred cCCCeEEEecCCC-CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 LSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 ~~g~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+|+.+..+++-. ..|.++++.+ ||+++++.+.|..|++++.++..... +.....+|+++++|.||+++++.-
T Consensus 341 lDgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL--- 414 (519)
T KOG0293|consen 341 LDGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNL--- 414 (519)
T ss_pred CCcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEc---
Confidence 9999988888765 4589999865 78999999999999999987655443 444566899999999999998876
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCc-eeEEEEe-CCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKS-NGVVQFD-TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~-v~~~~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
.+..+++||+...+.++.+.||..+. +-.-||. .+..++++||+|+.|+||+..+++++..+.+|. ..|+|++|+
T Consensus 415 -~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs--~~vNcVswN 491 (519)
T KOG0293|consen 415 -QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS--KTVNCVSWN 491 (519)
T ss_pred -ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc--ceeeEEecC
Confidence 48899999999999999999998743 2223454 455899999999999999999999999998665 489999999
Q ss_pred C-CCCEEEEEEcCCcEEEEEccc
Q 001190 639 K-EGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 639 p-~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
| +..++|++++||+|+||....
T Consensus 492 P~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 492 PADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCHHHhhccCCCCeEEEecCCc
Confidence 9 667899999999999997653
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-63 Score=477.82 Aligned_cols=490 Identities=20% Similarity=0.307 Sum_probs=412.3
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC----HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHHHHh
Q 001190 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFFFN----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1128)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (1128)
-..+|||||+|||+|+.+++++++||+|+++++| ++.|.+.|.+|+||.++..+++|+++. +-+..||||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~------kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPD------KKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCch------hHHHHHHHH
Confidence 4569999999999999999999999999999998 899999999999999999999996664 478899999
Q ss_pred HHhHhhccCCHHHHHHHHHh--hcccccccCHHHHHHHHHhhcccCccchhhhcccCCchHHHHHHHHHHHhhcccCccc
Q 001190 80 KYLEALDRQDKAKAVDILVN--DLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLF 157 (1128)
Q Consensus 80 ~~~ell~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~ 157 (1128)
..|||+|.++...|..+||+ .+.-|+..+|++|-+|+.||..+++++.+.|.+ .+.+++|..+.+.|...+.-
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V---- 154 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV---- 154 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE----
Confidence 99999999999999999987 477778899999999999999999999999875 56778888899888887766
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHhhCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q 001190 158 RDKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSP 237 (1128)
Q Consensus 158 ~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1128)
+||+||+.||.|||+||..+ +.+|++++++ .
T Consensus 155 --------VppSRLlaLlGQaLKWQqHQ-----------------------------------GLLPPGt~iD------L 185 (508)
T KOG0275|consen 155 --------VPPSRLLALLGQALKWQQHQ-----------------------------------GLLPPGTTID------L 185 (508)
T ss_pred --------cChHHHHHHHHHHhhhHhhc-----------------------------------CCCCCCceee------e
Confidence 89999999999999999775 3456666665 5
Q ss_pred CCCCccccchhhhhhhhccCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCCcccCCCChHHHhhhcCCCCCCCc
Q 001190 238 FPPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEE 317 (1128)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1128)
|+..++.-. ..+
T Consensus 186 FRGkAA~K~-~~E------------------------------------------------------------------- 197 (508)
T KOG0275|consen 186 FRGKAAMKD-QEE------------------------------------------------------------------- 197 (508)
T ss_pred ccchhhhhh-hHh-------------------------------------------------------------------
Confidence 555532111 000
Q ss_pred ccccCCCcccccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccc
Q 001190 318 VTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPF 397 (1128)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 397 (1128)
...+......+.++.++.+.|..|||||+ +|++||.||.|.+||+.+|+......++
T Consensus 198 -----------e~~Pt~l~r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQ----------- 254 (508)
T KOG0275|consen 198 -----------ERYPTQLARSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQ----------- 254 (508)
T ss_pred -----------hhchHHhhhheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhh-----------
Confidence 00011112234556778899999999999 7899999999999999999876542221
Q ss_pred cceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeE
Q 001190 398 QASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 398 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i 477 (1128)
....+.-++.+|.|+.||.|...||+|+.||.|+||.+.+|.+++.+. ..|+..|+++.|+.|+. .+.+++.|.++
T Consensus 255 Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tv 330 (508)
T KOG0275|consen 255 AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTV 330 (508)
T ss_pred hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceE
Confidence 112466789999999999999999999999999999999999998632 38999999999999999 69999999999
Q ss_pred EEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC--CeEEEEEEcCCC-CeE
Q 001190 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADG-SRL 553 (1128)
Q Consensus 478 ~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~~i~~~~~s~~g-~~l 553 (1128)
++.- .+|+++..++||...|+...|.+ +|..+++++.||+|++|+..+.++..++...+ .+|.++..-|.+ ..+
T Consensus 331 RiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 331 RIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHF 408 (508)
T ss_pred EEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceE
Confidence 9999 99999999999999999999855 78999999999999999999999888776543 478888877754 455
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEecccc--CCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCC
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
++|. ..+++++.++ .|+.++.|.... ++..-+++.+|.|.++++.++|+.++.|...+|.+..++..+.. .
T Consensus 409 iVCN----rsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--d 481 (508)
T KOG0275|consen 409 IVCN----RSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--D 481 (508)
T ss_pred EEEc----CCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--c
Confidence 6654 3788999887 477788776432 23455678999999999999999999999999999999887655 6
Q ss_pred cceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 632 LPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
+..++-+|..+.+++-+.||.+++|.
T Consensus 482 vIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 482 VIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccccccCcccchhhhhcccchhhhcC
Confidence 88999999999999999999999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.8e-56 Score=473.53 Aligned_cols=572 Identities=15% Similarity=0.237 Sum_probs=474.3
Q ss_pred EEEeCCCCcEEEEeeccCeEEEEEccCCcee-cccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCC
Q 001190 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1128)
Q Consensus 350 v~fspdg~~lla~gs~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 428 (1128)
++|+++|+ .|+|.. ...|.+-|+.++... .. .-.+....+++++.+||+.+|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~-~d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTAC-GDRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEec-CceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 677764 346888999998873 21 1334567899999999999999999999
Q ss_pred eEEEEEccCCCcceeceeecc-cccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCC
Q 001190 429 LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE 506 (1128)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~ 506 (1128)
.+++|++.+|+.++. +.. |++||.-++|.|.|. ++++|+.|+.++||| ..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~irs---wKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIRS---WKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhHh---HhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 999999999988874 555 999999999999997 899999999999999 8899999999999999999999988
Q ss_pred CccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccC
Q 001190 507 NIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585 (1128)
Q Consensus 507 ~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 585 (1128)
+...|++|..|+++++||+..... ......|...|+++.|++|+..+++++. |..+.+||+.+-+..++++...
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888899999999999999985444 6678889999999999999999999985 8999999998777777777654
Q ss_pred CceeEEEEeCC-----CCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 586 KSNGVVQFDTT-----QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 586 ~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
.+.++.+-++ +.+++++|.+|.+++||.++++.+........ ..+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence 3666667666 67999999999999999999988776654432 2356666666556666777788999998766
Q ss_pred CccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCc
Q 001190 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKP 740 (1128)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 740 (1128)
. .+.+.+.+
T Consensus 313 l-~i~k~ivG---------------------------------------------------------------------- 321 (775)
T KOG0319|consen 313 L-TIVKQIVG---------------------------------------------------------------------- 321 (775)
T ss_pred c-EEehhhcC----------------------------------------------------------------------
Confidence 5 33332222
Q ss_pred ceeEEEeeCCceeEEEecCCCCCcccEEEEEEe-cCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCc
Q 001190 741 WQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 819 (1128)
Q Consensus 741 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1128)
..+.|..+.|- |+.+++++++..+.+|+|+.....
T Consensus 322 ----------------------~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~---------------------- 357 (775)
T KOG0319|consen 322 ----------------------YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY---------------------- 357 (775)
T ss_pred ----------------------CchhheeeeecCCccceEEEEeCCCceEEEecCCCc----------------------
Confidence 33445555553 566788888889999998654321
Q ss_pred cccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCc----eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC
Q 001190 820 LMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF----KVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894 (1128)
Q Consensus 820 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d 894 (1128)
+ ..+.+ |.+.|.++....+|-+|++++ |.++++|.++.+ -++....+|...|.+++++.....++++++.|
T Consensus 358 c--~ii~G--H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D 433 (775)
T KOG0319|consen 358 C--QIIPG--HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD 433 (775)
T ss_pred e--EEEeC--chhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence 1 13444 999999999888889999999 999999988433 24556678999999999998777899999999
Q ss_pred CcEEEEecccceee---------ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCC
Q 001190 895 STIHIYNVRVDEVK---------SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 965 (1128)
Q Consensus 895 g~v~iwd~~~~~~~---------~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 965 (1128)
+++++|++...+.. .+...|...|++|+++|+.+++||||.|++.+||++..... .....+|. ..
T Consensus 434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l-----~~vLsGH~-RG 507 (775)
T KOG0319|consen 434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL-----LGVLSGHT-RG 507 (775)
T ss_pred ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceE-----EEEeeCCc-cc
Confidence 99999999863211 13457999999999999999999999999999999995543 44455666 88
Q ss_pred ccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEE
Q 001190 966 DTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCY 1044 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~ 1044 (1128)
+.+|.|+|..+.+++++ |.+|+||.++++.+++.+.+| ...|..+.|-.+|+.|++++.||-|++|++++++++++
T Consensus 508 vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH---~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~t 584 (775)
T KOG0319|consen 508 VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH---TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMT 584 (775)
T ss_pred eEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc---cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhh
Confidence 99999999999999975 999999999999999999887 89999999999999999999999999999999999999
Q ss_pred eCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC
Q 001190 1045 IAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~ 1094 (1128)
+. .|...+-+++-+| +..++++|+.||.|.+|.=.+.
T Consensus 585 lD------------~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 585 LD------------AHNDRVWALSVSP-LLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hh------------hccceeEEEeecC-ccceeEecCCCeEEEEeecCcH
Confidence 99 5666667788888 5779999999999999964443
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-54 Score=462.84 Aligned_cols=539 Identities=17% Similarity=0.248 Sum_probs=449.6
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccC-CCcceEEEEEccCCCEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD-VPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l 421 (1128)
..+.+++++.+||+. +|++++..+.+++|++.+|+.+.. .+. |++||.-++|+|.|..|
T Consensus 61 d~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll 120 (775)
T KOG0319|consen 61 DEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL 120 (775)
T ss_pred chhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence 677899999999988 778899999999999999987653 444 99999999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC-eEEEecCCCCCeEE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNFEGHEAPVYS 499 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~-~~~~~~~h~~~v~~ 499 (1128)
|+|+.|+.++|||+..+.+.. .|.||.+.|.++.|.|+-.+.+|++|..|+++++|| .++. ++..+..|.+.|++
T Consensus 121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 999999999999999998776 589999999999999997766799999999999999 5444 47888999999999
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC-----CCeEEEeeeccCCCceEEEEeCCCC
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
++|.+ |+..+++++.|..+.+||+...+....+.... .+-++.+-++ |.++++.| +++.+++||..++
T Consensus 198 L~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye-~~E~vv~l~~~~~~~~~~~~TaG----~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 198 LAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE-SLESVVRLREELGGKGEYIITAG----GSGVVQYWDSESG 270 (775)
T ss_pred eeecc--CCceEEEeccCcEEEEeehhhhhhhheechhh-heeeEEEechhcCCcceEEEEec----CCceEEEEecccc
Confidence 99976 57899999999999999996555544443322 4566666666 66888887 5999999999999
Q ss_pred ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE-cCCCCEEEEEEcCCcE
Q 001190 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF-SKEGNLLAVTTADNGF 653 (1128)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-sp~~~~l~~~~~dg~i 653 (1128)
+++..........+..+...+....++..+.|..+.++|.++.++...+.+.. ..|..+.| .|+.++|++++..+.+
T Consensus 271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~l 348 (775)
T KOG0319|consen 271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNSPEL 348 (775)
T ss_pred hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCc--hhheeeeecCCccceEEEEeCCCce
Confidence 88776655433345555566666788888899999999999999988887543 37888876 5688999999999999
Q ss_pred EEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCC
Q 001190 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1128)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 733 (1128)
++++..+....
T Consensus 349 r~y~~~~~~c~--------------------------------------------------------------------- 359 (775)
T KOG0319|consen 349 RLYTLPTSYCQ--------------------------------------------------------------------- 359 (775)
T ss_pred EEEecCCCceE---------------------------------------------------------------------
Confidence 99976553110
Q ss_pred CCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeecccee
Q 001190 734 VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (1128)
Q Consensus 734 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 813 (1128)
-+ .||...|.++....+|-.+++++.|.++++|.++.+..
T Consensus 360 ----------------------ii---~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~--------------- 399 (775)
T KOG0319|consen 360 ----------------------II---PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS--------------- 399 (775)
T ss_pred ----------------------EE---eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc---------------
Confidence 01 34889999999888888999999999999998742210
Q ss_pred ccCCCccccccccCCCCCCCeeEEEeccCC-CeEEEEe-CCeEEEEECCCceE-----E----EEeeCCCCCeeEEEEcC
Q 001190 814 LPSSGLLMANDVAGVNLEEAVPCIALSKND-SYVMSAT-GGKISLFNMMTFKV-----M----TTFMSPPPASTFLAFHP 882 (1128)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~la~~~-dg~i~vwd~~~~~~-----~----~~~~~~~~~v~~l~~s~ 882 (1128)
........ ..|...|.+++++..+ .++++++ |.++++|++...+. . .+...|...|+|++++|
T Consensus 400 ----~~~~~a~~--~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 400 ----KSLCVAQA--NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred ----hhhhhhhh--cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 01111112 2399999999998766 5778887 89999999976221 1 12346999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCC
Q 001190 883 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT 962 (1128)
Q Consensus 883 ~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 962 (1128)
+.+++|+|+.|++.+||+++.+....++.||+..|.+|.|++..+.++|+|.|++|+||.+++..+++++. +|.
T Consensus 474 -ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e-----GH~ 547 (775)
T KOG0319|consen 474 -NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE-----GHT 547 (775)
T ss_pred -CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec-----Ccc
Confidence 89999999999999999999999999999999999999999999999999999999999999998866554 444
Q ss_pred CCCccEEEEcCCCCEEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 963 PTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 963 ~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
..|..+.|-.+|+.|+++ .||-+++|++++..++..+..| ...|++++-++++.+++||+.||.|.+|.=.|
T Consensus 548 -~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H---~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 548 -SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH---NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred -ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc---cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 889999999999999985 5999999999999999998876 89999999999999999999999999997555
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-50 Score=413.17 Aligned_cols=566 Identities=14% Similarity=0.219 Sum_probs=445.5
Q ss_pred EeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEE
Q 001190 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1128)
Q Consensus 352 fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~ 431 (1128)
-.|.|..++.+. ...|.+-+++..... .++.+|...++-..|||.|-|+|+|...|+|+
T Consensus 26 ~dpkgd~ilY~n--Gksv~ir~i~~~~~~-------------------~iYtEH~~~vtVAkySPsG~yiASGD~sG~vR 84 (603)
T KOG0318|consen 26 GDPKGDNILYTN--GKSVIIRNIDNPASV-------------------DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVR 84 (603)
T ss_pred cCCCCCeEEEeC--CCEEEEEECCCccce-------------------eeeccccceeEEEEeCCCceEEeecCCcCcEE
Confidence 457777787764 467888888776543 24888999999999999999999999999999
Q ss_pred EEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC----CeEEEEecCCCeEEEecCCCCCeEEEeccCCCC
Q 001190 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507 (1128)
Q Consensus 432 vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d----~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~ 507 (1128)
|||....+.+ ...+++.-.++|.+++|+.|+++ ++..++. |.+.+|| +|..+-.+.||...|+++.|-|+..
T Consensus 85 IWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~KpsRP 160 (603)
T KOG0318|consen 85 IWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPSRP 160 (603)
T ss_pred EEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCCCc
Confidence 9998774433 22356778899999999999995 4444432 3567777 7777889999999999999987754
Q ss_pred ccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec---ccc
Q 001190 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA---GFR 584 (1128)
Q Consensus 508 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~~ 584 (1128)
-++++|++|+.|-+|+-...+-...+..|...|.++.|+|||.++++++. |+.+.+||-.+|+.+..+. +|.
T Consensus 161 -fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 161 -FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAHK 235 (603)
T ss_pred -eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCcc
Confidence 58999999999999987777777778888899999999999999999985 9999999999999999998 676
Q ss_pred CCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCC-CCcceEEEcCCCCEEEEEEcCCcEEEEEcccCcc
Q 001190 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (1128)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~ 663 (1128)
+ .|..++|+||+.++++++.|.+++|||+.+.+++.++...... .....+.|- ...|++.+.+|+|.+++.....
T Consensus 236 G-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~- 311 (603)
T KOG0318|consen 236 G-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS- 311 (603)
T ss_pred c-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-
Confidence 6 8999999999999999999999999999999999988765431 122344454 5588899999999998876552
Q ss_pred ccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCccee
Q 001190 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (1128)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (1128)
..+.+
T Consensus 312 ~~~~i--------------------------------------------------------------------------- 316 (603)
T KOG0318|consen 312 VLKVI--------------------------------------------------------------------------- 316 (603)
T ss_pred hhhee---------------------------------------------------------------------------
Confidence 22111
Q ss_pred EEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccc
Q 001190 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (1128)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1128)
.||...|+++..++|++++++++.||.|.-|+...+.. .
T Consensus 317 -----------------~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~------------------------~ 355 (603)
T KOG0318|consen 317 -----------------SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS------------------------D 355 (603)
T ss_pred -----------------cccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc------------------------c
Confidence 34889999999999999999999999999998654321 1
Q ss_pred cccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEE--eeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001190 824 DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1128)
Q Consensus 824 ~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd 901 (1128)
.+.+..|...|.+++.+..+.++.++-|+++++.++........ ++- .....+++..+ ++.+++..+.++-+.+=|
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~iv~l~~ 433 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISDIVLLQD 433 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCcEEEEec
Confidence 12223489999999998888888777799999998864433221 121 22234888888 766766666555444433
Q ss_pred cccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE
Q 001190 902 VRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1128)
Q Consensus 902 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 981 (1128)
...-. +.. -.-...+++++|++..++.|+.|+.|+||.+..++....... ..|. .+++.++||||+.+|+++
T Consensus 434 ~~~~~---~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~---~~h~-a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 434 QTKVS---SIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL---LEHR-AAITDVAYSPDGAYLAAG 505 (603)
T ss_pred CCcce---eec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee---eccc-CCceEEEECCCCcEEEEe
Confidence 33221 111 223467899999999999999999999999998764332222 1222 889999999999999999
Q ss_pred e-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCC
Q 001190 982 H-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1060 (1128)
Q Consensus 982 ~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1128)
+ .+.+.+||+.+.+....... .|...|.+++|||+.+++|+|+-|.+|.||+++.......+. .+|
T Consensus 506 Da~rkvv~yd~~s~~~~~~~w~--FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik-----------nAH 572 (603)
T KOG0318|consen 506 DASRKVVLYDVASREVKTNRWA--FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK-----------NAH 572 (603)
T ss_pred ccCCcEEEEEcccCceecceee--eeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec-----------ccc
Confidence 7 89999999998877332222 248999999999999999999999999999999877665555 467
Q ss_pred ccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1061 TVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1061 ~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
...+..+.|-. +..+++.+.|-.|++|.+.
T Consensus 573 ~~gVn~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 573 LGGVNSVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccCceeEEEec--CceEEeccCcceeEEeccc
Confidence 77789999974 6899999999999999874
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-49 Score=426.40 Aligned_cols=581 Identities=17% Similarity=0.286 Sum_probs=461.5
Q ss_pred EEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC
Q 001190 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1128)
Q Consensus 348 ~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 427 (1128)
-.+.|++||..+ ++ ...+.|.++|+..++-.. ..-.+...|++++.||+|.+|++....
T Consensus 18 Gnl~ft~dG~sv-iS-PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNSV-IS-PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCEE-Ee-ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 357899999844 33 467899999998766432 133477899999999999999999999
Q ss_pred CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCC---------eEEEecCCCCCeE
Q 001190 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR---------KLFNFEGHEAPVY 498 (1128)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~---------~~~~~~~h~~~v~ 498 (1128)
|.+.+-++.....+..+ ..+.+|.++.|||||+ ++|.|. .+.+.||...|. ..+++.||...|.
T Consensus 77 g~~~lvs~~~r~Vlh~f----~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLHRF----NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeEEE----eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 99988888775544321 2467899999999999 555554 688999993332 2366789999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCc--eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC---
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--- 573 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~--- 573 (1128)
++.|+. |.++|++|+.|-.+++|+++..+. ...+.+|...|.+.-|..+...+++.+ .||.+.+|....
T Consensus 150 si~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs----kdG~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 150 SIDWSD--DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS----KDGALFVWTCDLRPP 223 (893)
T ss_pred EEEecc--CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe----cCceEEEEEecCCCc
Confidence 999965 678999999999999999988777 456778888999999999999999988 499999997761
Q ss_pred --------------------Cce-----e-----eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEE
Q 001190 574 --------------------GTI-----K-----RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1128)
Q Consensus 574 --------------------~~~-----~-----~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 623 (1128)
++. . +.+-......+.+.+|++..+.|++|-..|...+|.+....+++.+
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~L 303 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSL 303 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEe
Confidence 111 0 0111112236888999999999999999999999999999999999
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEEcC-CcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcce
Q 001190 624 DAEGGLPNLPRLRFSKEGNLLAVTTAD-NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~ 702 (1128)
....+ +|..++|+..|.+||.|+.. |.+.||+..+..-.++
T Consensus 304 Sis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK------------------------------------ 345 (893)
T KOG0291|consen 304 SISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK------------------------------------ 345 (893)
T ss_pred ecccc--eeeEEEecccCCEEEEcCCccceEEEEEeeccceeee------------------------------------
Confidence 86544 79999999999999999864 7888998765411110
Q ss_pred ecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEe
Q 001190 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (1128)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 782 (1128)
. .+|...+++++++|||+++++|
T Consensus 346 ------------------------------------------------------Q---QgH~~~i~~l~YSpDgq~iaTG 368 (893)
T KOG0291|consen 346 ------------------------------------------------------Q---QGHSDRITSLAYSPDGQLIATG 368 (893)
T ss_pred ------------------------------------------------------c---cccccceeeEEECCCCcEEEec
Confidence 0 3488999999999999999999
Q ss_pred eccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCC
Q 001190 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT 861 (1128)
Q Consensus 783 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~ 861 (1128)
+.||.|++||. .+|.+.. .+.. |...|+.+.|+..|+.+++++ ||+|+.||+..
T Consensus 369 ~eDgKVKvWn~----------------------~SgfC~v-TFte--Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 369 AEDGKVKVWNT----------------------QSGFCFV-TFTE--HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred cCCCcEEEEec----------------------cCceEEE-Eecc--CCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 99999999964 4444443 2333 999999999999999999999 99999999999
Q ss_pred ceEEEEeeCCCC-CeeEEEEcCCCCCEEEEEeCCC-cEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcE
Q 001190 862 FKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDS-TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQL 939 (1128)
Q Consensus 862 ~~~~~~~~~~~~-~v~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i 939 (1128)
++..+++..+.. ...|++..| .|.++..|+.|. .|++|++++|+++..+.||.++|.+++|+|++..|||+++|++|
T Consensus 424 YrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTV 502 (893)
T ss_pred cceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceE
Confidence 999999986544 467899999 889998888775 79999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcc-cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCC-------------
Q 001190 940 CVWSIDTWEK-RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQD------------- 1004 (1128)
Q Consensus 940 ~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~------------- 1004 (1128)
|+||+-.... ..++... ..+..++|+|||+.++++. ||.|.+||+..+.....+.+..
T Consensus 503 RiW~if~s~~~vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~t 575 (893)
T KOG0291|consen 503 RIWDIFSSSGTVETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRIT 575 (893)
T ss_pred EEEEeeccCceeeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceee
Confidence 9999976422 2222222 6789999999999999976 9999999998776654333221
Q ss_pred ----CCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCC---------------------------
Q 001190 1005 ----ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP--------------------------- 1053 (1128)
Q Consensus 1005 ----~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------------------- 1053 (1128)
+.....+.++||+||.+|++|+..+.|++|++.++-++.+++-......
T Consensus 576 a~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~ 655 (893)
T KOG0291|consen 576 AENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESD 655 (893)
T ss_pred hhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccccccc
Confidence 1257789999999999999999999999999999888877762111000
Q ss_pred ----------ccc----C---CCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1054 ----------SVL----N---GSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1054 ----------~~~----~---~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
++. + ..-.+.++.+.|+| .++-+++++..|- .|+.+.
T Consensus 656 ~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEGl-~IYsld 709 (893)
T KOG0291|consen 656 LEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEGL-LIYSLD 709 (893)
T ss_pred ccccccccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccce-EEEecC
Confidence 000 0 01136689999999 4999999999885 445553
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-50 Score=410.52 Aligned_cols=537 Identities=17% Similarity=0.268 Sum_probs=427.0
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
+..--+|...|+-+.|||.|- ++|+|...|.|+|||....+.+.... +.--.++|..++|++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne-----------------f~v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE-----------------FQVLAGPIKDISWDF 113 (603)
T ss_pred eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee-----------------eeecccccccceeCC
Confidence 444446899999999999997 88999999999999987755443322 333567999999999
Q ss_pred CCCEEEEEeCC----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEec
Q 001190 417 DGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1128)
Q Consensus 417 dg~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~ 491 (1128)
|+++|++.++. |.+.+|| +|..+. .+.||...|++++|-|.-.. +++||++|++|.+|+ ..-+-..++.
T Consensus 114 ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r 187 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFR 187 (603)
T ss_pred CCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccc
Confidence 99999988753 3455555 454444 58899999999999988766 899999999999999 6667778888
Q ss_pred CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec---CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
.|...|+++.|+| ||.++++++.||+|.+||-.+++....+. .|.+.|.+++|+||+..+++++. |.+++|
T Consensus 188 ~HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KI 261 (603)
T KOG0318|consen 188 EHSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKI 261 (603)
T ss_pred ccccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEE
Confidence 9999999999977 68999999999999999999999888887 78889999999999999999985 999999
Q ss_pred EeCCCCceeeEeccccC---CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEE
Q 001190 569 WNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 645 (1128)
||+.+.++++++..... ..+. +-|. ...|++.+.+|.|.+++......+..+.+| ...|+++..+|++.+|+
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG-~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GH--nK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVG-CLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGH--NKSITALTVSPDGKTIY 336 (603)
T ss_pred EEeeccceEEEeecCCchhceEEE-EEEe--CCeEEEEEcCcEEEEecccCCChhheeccc--ccceeEEEEcCCCCEEE
Confidence 99999999999875543 1233 3343 678999999999999999999988888755 55899999999999999
Q ss_pred EEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCC
Q 001190 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1128)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1128)
+|+.||.|.-|+..++.... +
T Consensus 337 SgsyDG~I~~W~~~~g~~~~--~--------------------------------------------------------- 357 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDR--L--------------------------------------------------------- 357 (603)
T ss_pred eeccCceEEEEecCCccccc--c---------------------------------------------------------
Confidence 99999999999987662100 0
Q ss_pred CCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCcee
Q 001190 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (1128)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (1128)
. ..+|...|.+++.+..+. +++.+.|.++++-++.........
T Consensus 358 --------------------------------~-g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~--- 400 (603)
T KOG0318|consen 358 --------------------------------A-GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE--- 400 (603)
T ss_pred --------------------------------c-cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc---
Confidence 0 023888899998887666 778888889998766432211000
Q ss_pred eeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCC
Q 001190 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 885 (1128)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~ 885 (1128)
.. .......+++..+|+.+++.+.++.|.+..-.++ +.+.. -.-...+++++| ++
T Consensus 401 --------------~~-------~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~ 455 (603)
T KOG0318|consen 401 --------------VV-------KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DG 455 (603)
T ss_pred --------------ee-------ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CC
Confidence 00 0233445899999998888888766666653222 12221 234578999999 99
Q ss_pred CEEEEEeCCCcEEEEeccccee--eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCC
Q 001190 886 NIIAIGTEDSTIHIYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP 963 (1128)
Q Consensus 886 ~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 963 (1128)
..+|+|+.|+.|+||.+..+.+ ...+..|.++|+++++|||+.+||++...+.+.+||+.+++..... ..-|+
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~----w~FHt- 530 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR----WAFHT- 530 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce----eeeee-
Confidence 9999999999999999987653 3356679999999999999999999999999999999998752111 12222
Q ss_pred CCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 964 TGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 964 ~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
..+.+++|+|+.+++++++ |..|.||+++..... +....+|...|+.+.|- |...+++.+.|..|++|++.
T Consensus 531 akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 531 AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH--IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eeEEEEEeCCCceEEEeccccceEEEEEccChhhh--eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 7899999999999999988 999999999876554 34445567779999996 45568888899999999874
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-53 Score=416.64 Aligned_cols=375 Identities=22% Similarity=0.374 Sum_probs=308.0
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1128)
++.+.+........-+|.++|.|++|+|+|+ .||+|+.|.++++||+.+..++.. .++|.
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~ 157 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHK 157 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCc
Confidence 5566665555566667999999999999999 689999999999999999887653 89999
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec-----CCCeEEEEEecCCCeEEEEe
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-----PNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~-----d~~~~~l~s~s~d~~i~vWd 481 (1128)
..|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd 233 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWD 233 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEE
Confidence 9999999999999999999999999999999988765 6889999999999975 556 799999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
..|.++..+.||+.+|+|+.|-. + .+|++|+.|++|++|+...+....++.+|.++|+.++.+.|- ++-.
T Consensus 234 ~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy--~LRt---- 304 (480)
T KOG0271|consen 234 TKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDY--VLRT---- 304 (480)
T ss_pred ccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchh--hhhc----
Confidence 88899999999999999999843 3 499999999999999998888888999999999999887662 1111
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
-+|.|.+++.-..++ . ..+.+..+ ....-..
T Consensus 305 ------------------------------gaf~~t~~~~~~~se--------~-~~~Al~rY----------~~~~~~~ 335 (480)
T KOG0271|consen 305 ------------------------------GAFDHTGRKPKSFSE--------E-QKKALERY----------EAVLKDS 335 (480)
T ss_pred ------------------------------cccccccccCCChHH--------H-HHHHHHHH----------HHhhccC
Confidence 112222221100000 0 00000000 0111123
Q ss_pred CCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCC
Q 001190 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1128)
+..|++|++|.++.+|+.....+.+.
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~------------------------------------------------------ 361 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPIT------------------------------------------------------ 361 (480)
T ss_pred cceeEEecCCceEEEecccccccchh------------------------------------------------------
Confidence 47888999999998887533211110
Q ss_pred CCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCC
Q 001190 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (1128)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~ 800 (1128)
T Consensus 362 -------------------------------------------------------------------------------- 361 (480)
T KOG0271|consen 362 -------------------------------------------------------------------------------- 361 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEE
Q 001190 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLA 879 (1128)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~ 879 (1128)
.+.+ |..-|..+.||||++++|+++ |..|++||..+|+.+.+|.+|-..|..++
T Consensus 362 -----------------------rmtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 362 -----------------------RMTG--HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred -----------------------hhhc--hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 0111 777789999999999999999 99999999999999999999999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001190 880 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1128)
Q Consensus 880 ~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd 943 (1128)
|+. |.++|++|+.|.++++|++.+.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 417 wsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 417 WSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999 999999999999999999999999999999999999999999999999999999999995
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-48 Score=417.84 Aligned_cols=556 Identities=17% Similarity=0.248 Sum_probs=435.9
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
...+.+...|++++.||+|. +|++-...|...+-++.....++..+ -..+|.|+.||||
T Consensus 49 Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~--------------------fk~~v~~i~fSPn 107 (893)
T KOG0291|consen 49 TLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN--------------------FKRGVGAIKFSPN 107 (893)
T ss_pred eEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe--------------------ecCccceEEECCC
Confidence 33455899999999999999 44555677888888877666654322 2468999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCc-----ceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c--CCCeEEE
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKLFN 489 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~--~g~~~~~ 489 (1128)
|+++|.|.. +.+.||....... .....++.+|...|.++.|+.|.+ +|++|+.|.++++|+ . .+-....
T Consensus 108 g~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~ 184 (893)
T KOG0291|consen 108 GKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYA 184 (893)
T ss_pred CcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEe
Confidence 999998864 4699998754322 223346779999999999999999 899999999999999 3 3333678
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC-----------------------Cc-----------eeeec
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-----------------------GS-----------RVDYD 535 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-----------------------~~-----------~~~~~ 535 (1128)
+.+|.+.|.+.-|.. +...+++.+.||.+.+|..+.. +. +.-+.
T Consensus 185 l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln 262 (893)
T KOG0291|consen 185 LNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLN 262 (893)
T ss_pred ccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeec
Confidence 899999999888754 5578999999999999977611 11 01122
Q ss_pred CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC-CCcEEEEEC
Q 001190 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDM 614 (1128)
Q Consensus 536 ~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~ 614 (1128)
.....+++.+|.+.-+.|+++-. .|...+|.+....+++.+.-... .|..++|+..|.+|+.|+. -|.+.||+.
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred ccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEe
Confidence 23357899999999888888874 78889999999999999887765 7899999999999999875 589999999
Q ss_pred CCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccc
Q 001190 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 694 (1128)
.+..-+...+ +|...+++++++|||+++|+|+.||.|+|||...+..
T Consensus 338 qsEsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC------------------------------- 384 (893)
T KOG0291|consen 338 QSESYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC------------------------------- 384 (893)
T ss_pred eccceeeecc--ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE-------------------------------
Confidence 8876555544 5667899999999999999999999999999876621
Q ss_pred cCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEec
Q 001190 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1128)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1128)
.+++.. |+..|+.+.|+.
T Consensus 385 -----------------------------------------------------------~vTFte---Hts~Vt~v~f~~ 402 (893)
T KOG0291|consen 385 -----------------------------------------------------------FVTFTE---HTSGVTAVQFTA 402 (893)
T ss_pred -----------------------------------------------------------EEEecc---CCCceEEEEEEe
Confidence 112222 999999999999
Q ss_pred CcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CC-
Q 001190 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG- 852 (1128)
Q Consensus 775 ~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg- 852 (1128)
.|+.+++.+-||+|+.||+.+.. ... .+.. ..+....|++..|.|.++..|+ |.
T Consensus 403 ~g~~llssSLDGtVRAwDlkRYr----------------------NfR-Tft~-P~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLKRYR----------------------NFR-TFTS-PEPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred cCCEEEEeecCCeEEeeeecccc----------------------eee-eecC-CCceeeeEEEEcCCCCEEEeeccceE
Confidence 99999999999999999875421 111 0111 1345577899999999999998 54
Q ss_pred eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce-eeecccccccCeeEEEEcCCCCEEE
Q 001190 853 KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VKSKLKGHQKRITGLAFSTSLNILV 931 (1128)
Q Consensus 853 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~ 931 (1128)
.|.||++++|+.+..+.||.++|.+++|+| ++..||+|++|.+|++||+-... .+.++. +...+..++|+|||+.||
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELA 536 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEE
Confidence 499999999999999999999999999999 89999999999999999997653 334444 778899999999999999
Q ss_pred EEcCCCcEEEEECCCCcccceeEE--------------eecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccc
Q 001190 932 SSGADAQLCVWSIDTWEKRKSVTI--------------HIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMER 996 (1128)
Q Consensus 932 s~~~Dg~i~iwd~~~~~~~~~~~~--------------~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~ 996 (1128)
++.-||.|.+||++.+.+...+.. ...........+.+++|+||..++++. ...|++|++.++-.
T Consensus 537 VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 537 VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred EEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence 999999999999987665533311 111111226788999999999999965 78999999998765
Q ss_pred ccccccCCCC-----------------------------------------------------CCCeEEEEEeeCCCEEE
Q 001190 997 IRQWTPQDAL-----------------------------------------------------SAPISCAVYSCNSQLVF 1023 (1128)
Q Consensus 997 ~~~~~~~~~h-----------------------------------------------------~~~v~~l~~s~dg~~l~ 1023 (1128)
++.++..+++ .-.|.++.|||.|+-+|
T Consensus 617 lkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFA 696 (893)
T KOG0291|consen 617 LKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFA 696 (893)
T ss_pred eeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeee
Confidence 5543332210 12478899999999999
Q ss_pred EEecCCcEEEEecCCCceEEEeC
Q 001190 1024 ATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1024 t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.++.+| +.||.+.+.-+...+.
T Consensus 697 aatTEG-l~IYsld~~~~FDPf~ 718 (893)
T KOG0291|consen 697 AATTEG-LLIYSLDTTILFDPFD 718 (893)
T ss_pred eecccc-eEEEecCCceEEcccc
Confidence 998888 7889887765544444
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-48 Score=414.89 Aligned_cols=575 Identities=17% Similarity=0.236 Sum_probs=444.1
Q ss_pred CCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEE
Q 001190 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLY 433 (1128)
Q Consensus 354 pdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vw 433 (1128)
..|+ ++| ++.-..|.+||+++|+.... + ....-...|+|++-+||.-+||+|..||.|+||
T Consensus 32 ~~Gr-~va-~~a~E~vn~WdlRtge~~~~--l---------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGR-AVA-VSALEQVNIWDLRTGEIEKK--L---------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCc-EEE-EeccccEeEEeeecchhhhh--h---------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 3577 433 34556899999999955431 0 122334689999999999999999999999999
Q ss_pred EccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEE
Q 001190 434 SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF 512 (1128)
Q Consensus 434 d~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 512 (1128)
+..++..+. ++.||..+|+.+.|...|. +|+|||.|+.|.+|| ....-+.++.||.+.|+.+-|.. +..+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEEE
Confidence 999875544 6889999999999999999 899999999999999 66667899999999999988865 457999
Q ss_pred EEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC------------ceeeEe
Q 001190 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------------TIKRTY 580 (1128)
Q Consensus 513 s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~------------~~~~~~ 580 (1128)
+.+.|+.|++||+++..+..+...|...+.++++.+ +.+++++. ++.+.+|++... +...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777764 888999998311 111122
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEE--------------------------------EecCCC
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS--------------------------------TDAEGG 628 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~--------------------------------~~~~~~ 628 (1128)
.....+..-.+...++++++++-+.|..+.++.+.+.+.+.. +..-..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 222222333356677788899999999999998855321100 000011
Q ss_pred CCCcceEEEcCCCC---EEEEEEcCCcEEEEEcccCcc---ccccccCCccccccCcceeeeeecccccccccCCCCcce
Q 001190 629 LPNLPRLRFSKEGN---LLAVTTADNGFKILANAIGLR---SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1128)
Q Consensus 629 ~~~v~~v~~sp~~~---~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~ 702 (1128)
...+.++.|-|.+. .|+. -.++++.++.++.... ...........+++..|.+++++.+...++++
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg------- 391 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG------- 391 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-------
Confidence 22456777766433 2333 6678888888766211 11222333456678889999999887766433
Q ss_pred ecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEe
Q 001190 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (1128)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 782 (1128)
..+.+++|+...... .+. + ..+.+.+..|.|.+++++.|
T Consensus 392 -------------------------------a~~SikiWn~~t~kc---iRT--i-----~~~y~l~~~Fvpgd~~Iv~G 430 (888)
T KOG0306|consen 392 -------------------------------AGESIKIWNRDTLKC---IRT--I-----TCGYILASKFVPGDRYIVLG 430 (888)
T ss_pred -------------------------------CCCcEEEEEccCcce---eEE--e-----ccccEEEEEecCCCceEEEe
Confidence 238899999764221 111 1 34588899999999999999
Q ss_pred eccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCC
Q 001190 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT 861 (1128)
Q Consensus 783 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~ 861 (1128)
..+|.+.++|+.. ..++.. .. +|.+.|.+++.+||++.+++|+ |.+|++||..-
T Consensus 431 ~k~Gel~vfdlaS----------------------~~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 431 TKNGELQVFDLAS----------------------ASLVET-IR--AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred ccCCceEEEEeeh----------------------hhhhhh-hh--ccccceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 9999999997642 222221 12 3999999999999999999999 99999998741
Q ss_pred -----ceEEEEee-------CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCE
Q 001190 862 -----FKVMTTFM-------SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNI 929 (1128)
Q Consensus 862 -----~~~~~~~~-------~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~ 929 (1128)
+...+.+. .-...|.|+.+|| |+++||++--|.+|+||-+++-+....+.||.-||.|+.+|||+++
T Consensus 486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkl 564 (888)
T KOG0306|consen 486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKL 564 (888)
T ss_pred EeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCe
Confidence 11111111 1356799999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCC
Q 001190 930 LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSA 1008 (1128)
Q Consensus 930 l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~ 1008 (1128)
++|||.|+.|+||-++-|.|-+.+..+. ..|.+|.|-|+...+.+++ |+.++-||..+.+.+..+..| ..
T Consensus 565 ivTgSADKnVKiWGLdFGDCHKS~fAHd------DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H---~~ 635 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFGDCHKSFFAHD------DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH---HS 635 (888)
T ss_pred EEeccCCCceEEeccccchhhhhhhccc------CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc---hh
Confidence 9999999999999999998866654442 7899999999988888865 999999999999999888876 79
Q ss_pred CeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEE
Q 001190 1009 PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCY 1044 (1128)
Q Consensus 1009 ~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~ 1044 (1128)
.|+|++.+|+|.++++++.|.+|++|....-.++..
T Consensus 636 ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lE 671 (888)
T KOG0306|consen 636 EVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILE 671 (888)
T ss_pred eeeeeEEcCCCCeEEeccCCceeEeeeccCcceeee
Confidence 999999999999999999999999999766444333
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-48 Score=414.86 Aligned_cols=518 Identities=12% Similarity=0.272 Sum_probs=400.3
Q ss_pred cccCCCCCcceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCC
Q 001190 327 TWSLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1128)
+|++........... ..+..|+|+.-+||.- +||+|..||.|+||+..++.... .+.||
T Consensus 47 ~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngH 106 (888)
T KOG0306|consen 47 IWDLRTGEIEKKLILLKKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGH 106 (888)
T ss_pred EEeeecchhhhhhhhhcccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eeccc
Confidence 677665543333333 4556899999999986 88999999999999998876554 38899
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g 484 (1128)
...|+++.|...|..||+|+.|+.|.+||+-...-+. .+.||...|+..-|..+.+ ++++.+.|+.|++|| .+.
T Consensus 107 K~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tq 181 (888)
T KOG0306|consen 107 KAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQ 181 (888)
T ss_pred ccceEEEEEcccCceEeecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccc
Confidence 9999999999999999999999999999998755443 5889999999999998777 899999999999999 889
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce--------------eeecCCCCeEEEEEEcCCC
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR--------------VDYDAPGHWCTTMLYSADG 550 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~--------------~~~~~~~~~i~~~~~s~~g 550 (1128)
.+..+...|.+.++++++++ +.+++++.|+.+++|++...... .... ..+..-.++..+++
T Consensus 182 hCf~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq-sk~R~i~l~~d~s~ 256 (888)
T KOG0306|consen 182 HCFETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQ-SKGREINLVTDFSD 256 (888)
T ss_pred eeeeEEecccceEEEEEEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeec-cCCceeEEeecCcc
Confidence 99999999999999999954 58999999999999998211100 0000 01112222223333
Q ss_pred CeEEEeeecc----------------------------------------------------------------------
Q 001190 551 SRLFSCGTSK---------------------------------------------------------------------- 560 (1128)
Q Consensus 551 ~~l~~~~~~~---------------------------------------------------------------------- 560 (1128)
+++++-+.++
T Consensus 257 r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~ 336 (888)
T KOG0306|consen 257 RFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTEN 336 (888)
T ss_pred cEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcce
Confidence 3333332200
Q ss_pred ----CCCceEEEEeCCCCcee---------eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCC
Q 001190 561 ----DGDSFLVEWNESEGTIK---------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1128)
Q Consensus 561 ----~~~~~i~~wd~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 627 (1128)
-.++.+..|.+...... .++.||.. .|..++++.+...+++| ..+.+.+|+..+.+++.++...
T Consensus 337 ~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~- 413 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG- 413 (888)
T ss_pred eEEEeecCceEEEEeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc-
Confidence 01344555544431111 34556665 78888888765544444 4568889998888888888643
Q ss_pred CCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccC
Q 001190 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1128)
Q Consensus 628 ~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~ 707 (1128)
-+.+..|-|.++++++|...|.+.++|+.+. ......
T Consensus 414 ---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti--------------------------------------- 450 (888)
T KOG0306|consen 414 ---YILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETI--------------------------------------- 450 (888)
T ss_pred ---cEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhh---------------------------------------
Confidence 4678888888888888888888888887654 111111
Q ss_pred CCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccce
Q 001190 708 PVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGV 787 (1128)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 787 (1128)
..|.+.|+.++.+||++.+++++.|.+
T Consensus 451 -----------------------------------------------------~AHdgaIWsi~~~pD~~g~vT~saDkt 477 (888)
T KOG0306|consen 451 -----------------------------------------------------RAHDGAIWSISLSPDNKGFVTGSADKT 477 (888)
T ss_pred -----------------------------------------------------hccccceeeeeecCCCCceEEecCCcE
Confidence 128899999999999999999999999
Q ss_pred eEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEE
Q 001190 788 QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMT 866 (1128)
Q Consensus 788 i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~ 866 (1128)
|++|++..... ..|... ++..+.....+ ..++.|.|+.+||||++||++- |++++||-+++.+...
T Consensus 478 VkfWdf~l~~~-~~gt~~-----k~lsl~~~rtL-------el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfl 544 (888)
T KOG0306|consen 478 VKFWDFKLVVS-VPGTQK-----KVLSLKHTRTL-------ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFL 544 (888)
T ss_pred EEEEeEEEEec-cCcccc-----eeeeeccceEE-------eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeee
Confidence 99999864332 111110 00011111111 2678899999999999999998 9999999999999999
Q ss_pred EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001190 867 TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1128)
Q Consensus 867 ~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~ 946 (1128)
++.||.-+|.|+.+|| |++++++|+.|.+|+||-++-|.|.+.+-+|.+.|.++.|-|+...+.++|.|+.|+-||-..
T Consensus 545 sLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 545 SLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred eecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCC
Q 001190 947 WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASK 993 (1128)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~ 993 (1128)
.+.++.. ++|. ..+.+++.+|+|.++++++ |.+|++|....
T Consensus 624 Fe~iq~L-----~~H~-~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 624 FEEIQKL-----DGHH-SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhhheee-----ccch-heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 7765444 4444 8899999999999999975 89999999765
No 12
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.6e-45 Score=385.05 Aligned_cols=617 Identities=13% Similarity=0.180 Sum_probs=418.5
Q ss_pred EEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe--
Q 001190 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-- 425 (1128)
Q Consensus 348 ~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-- 425 (1128)
..++-+|... ++|- -....|.+||++..++ .+++..|..+++|+|||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ-------------------~hlvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQ-------------------SHLVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred Cccccccccc-ceee-ccCcEEEEEcccccch-------------------hheecccCcceeEEEEcCCCcEEEecccC
Confidence 3455566544 3332 1235788999876553 345778899999999999999999985
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC--CCeEEEEecCCCeEEEecCCCCCeEEEecc
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWELSGRKLFNFEGHEAPVYSICPH 503 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~--d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~ 503 (1128)
....++||++..-..+. .|..|+-.|+|++|+|.++ ++++.+. |-.|.+||..-.....-..-...|..++|+
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fs 174 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFS 174 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccccceeEEEEEEc
Confidence 66779999999876555 5789999999999999999 6776654 446788982222222222345678888985
Q ss_pred CCCCccEEEEEeccCcEEEEecCCCCcee-e--ecCCCCeEEEEEEcCCCCeEEEeee-ccC--------CCceEEEEeC
Q 001190 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRV-D--YDAPGHWCTTMLYSADGSRLFSCGT-SKD--------GDSFLVEWNE 571 (1128)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~--~~~~~~~i~~~~~s~~g~~l~~~~~-~~~--------~~~~i~~wd~ 571 (1128)
++|.|+++.+ ...|++|.++...... . +.+...-...+. +..+++.++. +.- ..|.+.- .
T Consensus 175 --EdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr---~n~f~avaCg~gicAestfait~qGhLvE--F 246 (1080)
T KOG1408|consen 175 --EDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLR---FNEFLAVACGVGICAESTFAITAQGHLVE--F 246 (1080)
T ss_pred --cCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccc---cchhhhhhhcCcccccceEEEecccceee--e
Confidence 4788998876 5789999987665211 1 111111000111 1111111110 000 0122222 2
Q ss_pred CCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC----------------------CCC
Q 001190 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE----------------------GGL 629 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----------------------~~~ 629 (1128)
...+++..+-.-......|++.+ .++|++|+.+|.|++|+.++...+.+++.. +..
T Consensus 247 SsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 247 SSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred chhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence 22333332222222245566665 579999999999999998776544433221 112
Q ss_pred CCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCC
Q 001190 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (1128)
....++.|++....|.+...|..++|||++.-.+.-+... .-.
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s---~ly---------------------------------- 367 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS---MLY---------------------------------- 367 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccceee---eee----------------------------------
Confidence 2335778999889999999999999999987533222110 000
Q ss_pred CCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeE
Q 001190 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK 789 (1128)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 789 (1128)
..--||++.... +. + |...- +.-|.+- +++++.|++|+
T Consensus 368 --------------------------HS~ciW~Ve~~p----~n---v-----~~~~~---aclp~~c-F~TCSsD~TIR 405 (1080)
T KOG1408|consen 368 --------------------------HSACIWDVENLP----CN---V-----HSPTA---ACLPRGC-FTTCSSDGTIR 405 (1080)
T ss_pred --------------------------ccceeeeecccc----cc---c-----cCccc---ccCCccc-eeEecCCCcEE
Confidence 223456654311 00 0 11111 1123333 88999999999
Q ss_pred eeeccccCCCCC--Cceeeeeccc-ee---------ccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEE
Q 001190 790 LWKWHRNEQNPS--GKATASAVPQ-HW---------LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISL 856 (1128)
Q Consensus 790 lw~~~~~~~~~~--~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~v 856 (1128)
+|++....-+.. ........++ +| |...+..-............++++++||||++||+|. .|.++|
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRV 485 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEE
Confidence 999886321000 0000000000 00 1111000000001112456799999999999999998 799999
Q ss_pred EECCCceEEEEeeCCCCCeeEEEEcCC--CCCEEEEEeCCCcEEEEeccc-ceeeecccccccCeeEEEEcCCC--CEEE
Q 001190 857 FNMMTFKVMTTFMSPPPASTFLAFHPQ--DNNIIAIGTEDSTIHIYNVRV-DEVKSKLKGHQKRITGLAFSTSL--NILV 931 (1128)
Q Consensus 857 wd~~~~~~~~~~~~~~~~v~~l~~s~~--d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~l~ 931 (1128)
|++...+....+.+|..+|.|+.||.. ..++||+++.|.-|+|||+.. ..++.++.+|+..|+++.|...| ..++
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 999999999999999999999999862 357999999999999999974 46788999999999999999887 7899
Q ss_pred EEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecCCcccccccccCCCCCCCe
Q 001190 932 SSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPI 1010 (1128)
Q Consensus 932 s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v 1010 (1128)
++|.|+.|.+--.........++.+..... ...+..|+..|..++++++ .|..|+||++.+++..+.+.+.+.|.+..
T Consensus 566 scGADksimFr~~qk~~~g~~f~r~t~t~~-ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSGRLFPRHTQTLS-KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred eccCchhhheehhccccCceeccccccccc-cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 999999876544332111111211111111 1567889999999999885 69999999999999999999999988999
Q ss_pred EEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEc
Q 001190 1011 SCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1011 ~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd 1090 (1128)
..+...|.|-||++.+.|+++.++|.-+|+++.++. +|.-.|+.+.|.+ |.+.|++.+.||.|.||.
T Consensus 645 IKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~------------GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 645 IKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT------------GHSEAVTGVKFLN-DCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred EEEEECCCccEEEEeecCCceEEEEeccchhhhhhc------------Ccchheeeeeecc-cchhheeecCCceEEEEE
Confidence 999999999999999999999999999999999988 5666779999999 799999999999999999
Q ss_pred CCC
Q 001190 1091 PSE 1093 (1128)
Q Consensus 1091 ~~~ 1093 (1128)
+.-
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 874
No 13
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-46 Score=365.92 Aligned_cols=324 Identities=18% Similarity=0.277 Sum_probs=286.5
Q ss_pred CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceeccc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1128)
+|..+|.|++|+|+|..|++|+.|.++++||+.+... ...
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-~~t--------------------------------------- 152 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-LFT--------------------------------------- 152 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-cee---------------------------------------
Confidence 5556899999999999999999999999999987521 111
Q ss_pred CCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccc
Q 001190 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1128)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 786 (1128)
. .+|...|.+++|+|||+.|++|+.||
T Consensus 153 --------------------------------------------------~---KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 153 --------------------------------------------------C---KGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred --------------------------------------------------e---cCCccEEEEEEECCCcchhhccccCC
Confidence 1 34899999999999999999999999
Q ss_pred eeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc-----CCCeEEEEe-CCeEEEEECC
Q 001190 787 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-----NDSYVMSAT-GGKISLFNMM 860 (1128)
Q Consensus 787 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----dg~~la~~~-dg~i~vwd~~ 860 (1128)
.|++| |+++|..+...+.+ |...|++++|.| ..++||+++ ||.++|||+.
T Consensus 180 ~I~lw----------------------dpktg~~~g~~l~g--H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 180 SIRLW----------------------DPKTGQQIGRALRG--HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred eEEEe----------------------cCCCCCcccccccC--cccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 99988 67788888888888 999999999966 678999998 9999999999
Q ss_pred CceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEc-----------CCC--
Q 001190 861 TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS-----------TSL-- 927 (1128)
Q Consensus 861 ~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s-----------~d~-- 927 (1128)
.+.++..+.+|..+|+|+.|- +..++++|+.|++|++|+...|++..+++||...|+.++.+ |.+
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK 313 (480)
T ss_pred CceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccccc
Confidence 999999999999999999996 35699999999999999999999999999999999999887 223
Q ss_pred -----------------------CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-c
Q 001190 928 -----------------------NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E 983 (1128)
Q Consensus 928 -----------------------~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d 983 (1128)
..|+||+.|.++.+|+-...++ ++....+|. ..|..+.||||++++++++ |
T Consensus 314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk----pi~rmtgHq-~lVn~V~fSPd~r~IASaSFD 388 (480)
T KOG0271|consen 314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK----PITRMTGHQ-ALVNHVSFSPDGRYIASASFD 388 (480)
T ss_pred CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc----chhhhhchh-hheeeEEECCCccEEEEeecc
Confidence 3599999999999999765432 222334444 7899999999999999987 9
Q ss_pred CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccc
Q 001190 984 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1063 (1128)
Q Consensus 984 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1128)
..|++|+..+|+.+..+.+| -..|..++||.|.++|++|+.|.+++|||+.+.++...+. +|...
T Consensus 389 kSVkLW~g~tGk~lasfRGH---v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp------------Gh~DE 453 (480)
T KOG0271|consen 389 KSVKLWDGRTGKFLASFRGH---VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP------------GHADE 453 (480)
T ss_pred cceeeeeCCCcchhhhhhhc---cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC------------CCCce
Confidence 99999999999999999886 8999999999999999999999999999999988877766 66777
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEc
Q 001190 1064 PLVVAAHPLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1064 ~~~~~~~p~~~~~l~s~~~dg~i~iWd 1090 (1128)
|.++.|+| ||..+++|+.|..+++|.
T Consensus 454 Vf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 454 VFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEEecC-CCceeecCCCceEEEeec
Confidence 89999999 799999999999999995
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3e-41 Score=343.21 Aligned_cols=306 Identities=18% Similarity=0.279 Sum_probs=260.1
Q ss_pred CCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCC--ceecccccccccccccCccccc-eeccCCCcc
Q 001190 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQA-SIFKDVPIS 408 (1128)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~ 408 (1128)
+.|......++|+.+|.+++|+|-..-++|+|+.|.+.++|++... .......++ .+... ..-...+..
T Consensus 166 ~I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr--------h~~~~~~~s~~~nkd 237 (524)
T KOG0273|consen 166 EIPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR--------HCIREGGKSVPSNKD 237 (524)
T ss_pred cccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh--------hhhhhhcccCCccCC
Confidence 3566777788899999999999976657899999999999998751 111100000 00000 001112468
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE
Q 001190 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1128)
Q Consensus 409 V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~ 487 (1128)
|++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+|| .+|...
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEE
Confidence 9999999999999999999999999988753 22 5889999999999999999 899999999999999 999999
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
+.+..|..+-..+.|.. ...+++.+.||.|+++.+.......++.+|.+.|.++.|+|.|.+|++++. |++++
T Consensus 312 q~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlk 384 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLK 384 (524)
T ss_pred EeeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeE
Confidence 99999998867777743 247999999999999999999999999999999999999999999999984 99999
Q ss_pred EEeCCCCceeeEeccccCCceeEEEEeCCC---------CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQ---------NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
||+.........+..|.+ .|..+.|+|.| ..+++++.|++|++||+..+.++..+..| ..+|.+++|+
T Consensus 385 iWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS 461 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFS 461 (524)
T ss_pred eeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEec
Confidence 999999999999999998 78889999875 37899999999999999999999998755 4589999999
Q ss_pred CCCCEEEEEEcCCcEEEEEcccC
Q 001190 639 KEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
|+|+++|+|+.||.|.+|+..++
T Consensus 462 ~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 462 PNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred CCCcEEEecCCCCeeEeccccch
Confidence 99999999999999999998876
No 15
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=6.5e-38 Score=340.40 Aligned_cols=585 Identities=15% Similarity=0.150 Sum_probs=441.9
Q ss_pred EEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCe
Q 001190 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1128)
Q Consensus 350 v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 429 (1128)
..|..-|+.++++.+.+.+..+||.+.-..+.- -..+...|+|++-..+ ++.+++.. .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASGN-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecCc-E
Confidence 556666666788888999999999987666532 2357889999987655 44444333 3
Q ss_pred EEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-Ce----EEEecCCCCCeEEEecc
Q 001190 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RK----LFNFEGHEAPVYSICPH 503 (1128)
Q Consensus 430 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g-~~----~~~~~~h~~~v~~~~~~ 503 (1128)
|.+|- .|+.++. .+.+|.+.|.-+.-- |. .++++..++.+.||+ ..+ .+ +..++...+.|+++. |
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~f--Ge--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLPF--GE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEeee--cc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 55554 4544443 466788878777654 66 688999999999999 543 22 112222233377764 6
Q ss_pred CCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc
Q 001190 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1128)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1128)
|+.--+.++.|+.+|.+.+|++++++...++......|+++.-+|-=..++.|. .+|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~----~~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGL----ENGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEec----cCceEEEEEcccCcEEEEEEcc
Confidence 665566789999999999999999999999999999999999999888999888 4999999999999999999977
Q ss_pred cCCceeEEEEeCCCCEEEE-EECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCc
Q 001190 584 RKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
.+ .|+.++|..||+.+++ |+..|.+.+||++..+.+..+.. .|.+.|....|-|....+++++.|+.+++|-.+++.
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 54 8999999999976555 55679999999999888877753 334578999999999999999999999999765441
Q ss_pred cccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcce
Q 001190 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1128)
Q Consensus 663 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 742 (1128)
-.. +
T Consensus 322 g~p-------------------------------------------------------------------------R--- 325 (910)
T KOG1539|consen 322 GVP-------------------------------------------------------------------------R--- 325 (910)
T ss_pred Ccc-------------------------------------------------------------------------h---
Confidence 100 0
Q ss_pred eEEEeeCCceeEEEecCCCCCcccEEEEEEe-cCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccc
Q 001190 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLM 821 (1128)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1128)
.++.. .||..+..++.|. .+|..+++++.|++++.+++....++..-.. .......+..
T Consensus 326 -----------~LR~R--~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~ 385 (910)
T KOG1539|consen 326 -----------LLRSR--GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKV 385 (910)
T ss_pred -----------heeec--cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccc
Confidence 01111 3588888889888 7888899999999999887765433221110 1111111111
Q ss_pred cccccCCCCCCCeeEEEeccCC----CeEEEEe--CCeEEEEECCCceE-EEEee-----CCCCCeeEEEEcCCCCCEEE
Q 001190 822 ANDVAGVNLEEAVPCIALSKND----SYVMSAT--GGKISLFNMMTFKV-MTTFM-----SPPPASTFLAFHPQDNNIIA 889 (1128)
Q Consensus 822 ~~~~~~~~~~~~v~~~~~s~dg----~~la~~~--dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~l~~s~~d~~~la 889 (1128)
.........-.+|..+++..+- .-++++. +...+.|+...... ...+. .....+++++.++ .|++.+
T Consensus 386 ~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~ 464 (910)
T KOG1539|consen 386 NVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVF 464 (910)
T ss_pred cccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEE
Confidence 1000000123457777775422 1234443 56699999976554 22222 2336799999999 999999
Q ss_pred EEeCCCcEEEEecccceeeecc---cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCc
Q 001190 890 IGTEDSTIHIYNVRVDEVKSKL---KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966 (1128)
Q Consensus 890 sg~~dg~v~iwd~~~~~~~~~l---~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 966 (1128)
.|+..|.|.+|++++|-....+ ..|.++|++++...-++.++|++.+|.+++||......+....+. ..+
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-------~~~ 537 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-------SSI 537 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-------CCc
Confidence 9999999999999999988888 589999999999988899999999999999999987755444443 667
Q ss_pred cEEEEcCCCCEEEE-EecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEe
Q 001190 967 TRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 967 ~~v~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1045 (1128)
..+..+.....+++ .+|-.|+++|+.+.+.++.+.+| ...|++++|||||++|++++.|++|++||+.++.++..+
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh---~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH---GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc---ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 88888888777776 46889999999999999999886 899999999999999999999999999999999999888
Q ss_pred CCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC-CcEEEEcCC
Q 001190 1046 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-GSVKVMEPS 1092 (1128)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-g~i~iWd~~ 1092 (1128)
.. ....+++.|+| ++.+|+++..| .-|++|--.
T Consensus 615 ~v-------------d~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 615 LV-------------DSPCTSLSFSP-NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ec-------------CCcceeeEECC-CCCEEEEEEecCceEEEEEch
Confidence 72 23458899999 69999999999 569999533
No 16
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2e-39 Score=343.99 Aligned_cols=553 Identities=15% Similarity=0.200 Sum_probs=359.4
Q ss_pred CCCcEEEEEEeCCCCcEEEEee--ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
|..+++|++|||+|+ |+|+|- ....+++|++.....+.. +..|...|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 677999999999999 789984 456899999988776654 7789999999999999999
Q ss_pred EEEEeC--CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEE---------
Q 001190 421 VGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF--------- 488 (1128)
Q Consensus 421 las~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~--------- 488 (1128)
+++.+. |-.|.+||+....... -..-...|..++|+.||. +++|.+ ...|++|. ..++...
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998775 5678899887543222 223456799999999999 788877 68999998 4333100
Q ss_pred ----Ee------------------------cCC-----------------CCCeEEEeccCCCCccEEEEEeccCcEEEE
Q 001190 489 ----NF------------------------EGH-----------------EAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1128)
Q Consensus 489 ----~~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w 523 (1128)
.+ .|| +..-+|+++ +.++|+.|+.+|.|++|
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccceeeec
Confidence 00 011 111233444 33689999999999999
Q ss_pred ecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEE
Q 001190 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (1128)
Q Consensus 524 d~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1128)
+..+.....++.....- |.-++.+. ..=....+.....| +..-.+.|++....|.+.
T Consensus 286 np~tL~y~~Tlpr~hal---------g~d~a~~~---------q~~~~~s~~~~a~f-----PD~IA~~Fdet~~klscV 342 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHAL---------GSDTANLS---------QPEPKNSESSPAIF-----PDAIACQFDETTDKLSCV 342 (1080)
T ss_pred Ccchhhhcccccccccc---------ccchhhcc---------cccccccccCcccC-----CceeEEEecCCCceEEEE
Confidence 77654433332211100 00000000 00000000000000 012234555555566666
Q ss_pred ECCCcEEEEECCCCeeeEE-EecCCCCCCcceEEEc------------CCCCEEEEEEcCCcEEEEEcccCccccccccC
Q 001190 604 GEDSQIKFWDMDNVNILTS-TDAEGGLPNLPRLRFS------------KEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1128)
Q Consensus 604 s~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s------------p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1128)
..|..++|||++.-..+.. ...-.|...|+.+.-- |. ..+++++.|++|++|++..... -.....
T Consensus 343 YndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~-~cF~TCSsD~TIRlW~l~~ctn-n~vyrR 420 (1080)
T KOG1408|consen 343 YNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPR-GCFTTCSSDGTIRLWDLAFCTN-NQVYRR 420 (1080)
T ss_pred EcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCc-cceeEecCCCcEEEeecccccc-cceeec
Confidence 6666666666554322111 0011111123322221 22 2488999999999999876311 000000
Q ss_pred CccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCC
Q 001190 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSG 750 (1128)
Q Consensus 671 ~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~ 750 (1128)
.. ++.+-..+++ .|+..-+. .|...-++|-...
T Consensus 421 Ni------------ls~~l~ki~y-----------------------------~d~~~q~~--~d~~~~~fdka~~---- 453 (1080)
T KOG1408|consen 421 NI------------LSANLSKIPY-----------------------------EDSTQQIM--HDASAGIFDKALV---- 453 (1080)
T ss_pred cc------------chhhhhcCcc-----------------------------ccCchhhh--hhccCCcccccch----
Confidence 00 0000000000 00000000 0011112221110
Q ss_pred ceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCC
Q 001190 751 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 830 (1128)
Q Consensus 751 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1128)
..-+....+++++++|+|++|++|..-|.+++|++..-.. + ..+. .|
T Consensus 454 --------s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~----------------------~-~~~e--AH 500 (1080)
T KOG1408|consen 454 --------STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY----------------------T-CFME--AH 500 (1080)
T ss_pred --------hhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh----------------------h-hhee--cc
Confidence 0012455789999999999999999999999998753211 0 1122 39
Q ss_pred CCCeeEEEecc---CCCeEEEEe-CCeEEEEECC-CceEEEEeeCCCCCeeEEEEcCCCC--CEEEEEeCCCcEEEEecc
Q 001190 831 EEAVPCIALSK---NDSYVMSAT-GGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDN--NIIAIGTEDSTIHIYNVR 903 (1128)
Q Consensus 831 ~~~v~~~~~s~---dg~~la~~~-dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~--~~lasg~~dg~v~iwd~~ 903 (1128)
+.+|.|+.||. ..++||+++ |.-|+|||+. ...++.++.+|...|+++.|.- .| ..+++++.|+.|.+--..
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~q 579 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQ 579 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhc
Confidence 99999999986 357899998 7779999996 4567889999999999999987 44 678889999988764433
Q ss_pred cceeeeccccc-----ccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE
Q 001190 904 VDEVKSKLKGH-----QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 904 ~~~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 978 (1128)
...-...+..| ...+..++..|..+++++++.|+.|+|||+.+|++.+.+.... ++. +....+...|.|.|+
T Consensus 580 k~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~--~~e-G~lIKv~lDPSgiY~ 656 (1080)
T KOG1408|consen 580 KASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR--DHE-GDLIKVILDPSGIYL 656 (1080)
T ss_pred cccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc--cCC-CceEEEEECCCccEE
Confidence 22111222222 2468899999999999999999999999999999877665432 222 556778999999999
Q ss_pred EEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 979 LVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 979 ~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
+++ +|.++.++|..+++++....+| ...|+.+.|++|.++|++.+.||+|.||.+..
T Consensus 657 atScsdktl~~~Df~sgEcvA~m~GH---sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 657 ATSCSDKTLCFVDFVSGECVAQMTGH---SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEeecCCceEEEEeccchhhhhhcCc---chheeeeeecccchhheeecCCceEEEEECch
Confidence 985 7999999999999999998876 89999999999999999999999999999875
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-41 Score=339.33 Aligned_cols=283 Identities=17% Similarity=0.256 Sum_probs=264.9
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC--C
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 418 (1128)
++...+|..+.||+|++ .|||||-+|.+++|+..+...+. .|.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 35677899999999999 78999999999999999886553 39999999999999996 6
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCe
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v 497 (1128)
..||+|+.||++++|++++..++. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999987666 6889999999999999999 899999999999999 8899999999999999
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
.+++|++ ||.+++||+.|..-+|||++++.++..+.+|..+|.++.|+|+|..|++|+ +|++++|||++..+.+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs----~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS----SDNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC----CCCcEEEeeecccccc
Confidence 9999977 778999999999999999999999999999999999999999999999998 4999999999999999
Q ss_pred eEeccccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw 656 (1128)
.++.+|.+ .|+.++|+| .|.+|++++.|++++||...+..+++.+.+|. ..|.++.+++|+..+++++.|+++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe--~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE--GKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCc--cceEEEEeccCCceEEEeccCceeeec
Confidence 99999998 899999998 67899999999999999999999999998654 489999999999999999999999999
Q ss_pred E
Q 001190 657 A 657 (1128)
Q Consensus 657 ~ 657 (1128)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
No 18
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-38 Score=330.03 Aligned_cols=475 Identities=16% Similarity=0.272 Sum_probs=361.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+++.|-||.|+|... .+.++-..|.|.|||.++...+.. +.-.+-+|++..|-+..++++
T Consensus 12 rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 888999999999998 556667899999999999887754 333567999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCCCCeEEE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~~v~~~ 500 (1128)
+|++|..|+||+.++++.++ +|..|.+.|++++.+|... +++|+|+|-+|++|| ..-.+.+++.||+.-|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998777 6889999999999999998 899999999999999 4456789999999999999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCC--CeEEEeeeccCCCceEEEEeCCCCceee
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--SRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1128)
+|.|. |...+++++-|++|++|.+....+..++.+|...|+++.|-+.| -+|++++ .|..+++||..+..+++
T Consensus 147 ~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga----DD~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA----DDLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC----CCceEEEeecchHHHHH
Confidence 99987 55799999999999999999999999999999999999998866 4888887 49999999999999999
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
++.||.+ .|..++|+|.-..+++|++||+++||+..+.+...++.... .+++|++-.+.++.+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 89999999999999999999999999999998888876544 38999999999999999999988765 22
Q ss_pred ccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCC
Q 001190 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1128)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (1128)
-.. ...+.+++.|+.+
T Consensus 298 gre------------------eP~vsMd~~gKIi---------------------------------------------- 313 (794)
T KOG0276|consen 298 GRE------------------EPAVSMDSNGKII---------------------------------------------- 313 (794)
T ss_pred cCC------------------CCceeecCCccEE----------------------------------------------
Confidence 111 1123344444333
Q ss_pred CcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCC
Q 001190 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1128)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1128)
|.... .|..+-.- +.+.++ ++..|
T Consensus 314 --wa~~~--------------------ei~~~~~k-------s~~~~~---------------------------ev~Dg 337 (794)
T KOG0276|consen 314 --WAVHS--------------------EIQAVNLK-------SVGAQK---------------------------EVTDG 337 (794)
T ss_pred --EEcCc--------------------eeeeeece-------eccCcc---------------------------cccCC
Confidence 22110 11111000 000000 11111
Q ss_pred ccccccccCC-CCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 001190 819 LLMANDVAGV-NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (1128)
Q Consensus 819 ~~~~~~~~~~-~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v 897 (1128)
+.+....... .-.-....++.||+|+++++++||.-.||..-..+ ....+.-....|++ |....|+-..++.|
T Consensus 338 ErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRes~~~v 411 (794)
T KOG0276|consen 338 ERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRESNGNV 411 (794)
T ss_pred ccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEecCCce
Confidence 1111000000 01112345788999999999999998888743221 12445667788998 76777888889999
Q ss_pred EEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCE
Q 001190 898 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 977 (1128)
Q Consensus 898 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 977 (1128)
.++ ++.+..+.+...-. ...--.|.+|...+ ++.+++||.++++.++.+.+. ...+.|+.+|.+
T Consensus 412 ki~--knfke~ksi~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v~---------~k~v~w~d~g~l 475 (794)
T KOG0276|consen 412 KIF--KNFKEHKSIRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELVRRIEVT---------SKHVYWSDNGEL 475 (794)
T ss_pred EEE--ecceeccccccccc----eeeecCCceEEEEe-CCeEEEEEcccceEEEEEeec---------cceeEEecCCCE
Confidence 998 66666655542211 11122344555544 567999999999876665543 467999999999
Q ss_pred EEEEecCeEEEEecCC
Q 001190 978 MLVVHETQLAIYDASK 993 (1128)
Q Consensus 978 l~~~~d~~i~v~d~~~ 993 (1128)
++++.|...+++....
T Consensus 476 Vai~~d~Sfyil~~n~ 491 (794)
T KOG0276|consen 476 VAIAGDDSFYILKFNA 491 (794)
T ss_pred EEEEecCceeEEEecH
Confidence 9999888877776553
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-39 Score=304.63 Aligned_cols=292 Identities=22% Similarity=0.308 Sum_probs=254.7
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
+|++.|+.++..+.+..++.+++.|.+|.+|++......... ..+.+.||+..|..++.++||.+.
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccCCceE
Confidence 499999999999998889999999999999998765332211 224599999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCC--CCCeEE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH--EAPVYS 499 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h--~~~v~~ 499 (1128)
++++.|+++++||+.+|+..+ .|.||...|.+++|++|.+ .++||+.|++|++|+.-|.+..++..+ .+.|.|
T Consensus 79 lS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC 153 (315)
T ss_pred EeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence 999999999999999997666 4889999999999999999 799999999999999778888777655 789999
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++++ .++.+.+||++.++.+..
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg----kdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG----KDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC----CCceEEEEEccCCceeEe
Confidence 9999998789999999999999999999999999999999999999999999999987 599999999999999887
Q ss_pred eccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC-------CCCcceEEEcCCCCEEEEEEcCCc
Q 001190 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNG 652 (1128)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~sp~~~~l~~~~~dg~ 652 (1128)
+.... .|.+++|+|+.-.| ++..+..|+|||++++..+..+..... .....+++|++||..|..|..|+.
T Consensus 230 l~a~~--~v~sl~fspnrywL-~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 230 LEAFD--IVNSLCFSPNRYWL-CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred ccCCC--eEeeEEecCCceeE-eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 77654 69999999986544 444556699999999988877654322 223467899999999999999999
Q ss_pred EEEEEcc
Q 001190 653 FKILANA 659 (1128)
Q Consensus 653 i~iw~~~ 659 (1128)
|++|.+.
T Consensus 307 irv~qv~ 313 (315)
T KOG0279|consen 307 IRVWQVA 313 (315)
T ss_pred EEEEEee
Confidence 9999864
No 20
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.2e-37 Score=329.53 Aligned_cols=619 Identities=14% Similarity=0.158 Sum_probs=396.2
Q ss_pred ceEEee-cCCCcEEEEEEeCCCC--cEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001190 336 TVAVSL-HQGSTVISMDFHPSHQ--TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1128)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspdg~--~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1128)
....++ +|..+|+|+.|-|+.. -++++|+.|+.|++|.++....+.. ..+.+|...+.|+
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i-----------------~~~~g~~~~~~cv 107 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI-----------------YTIQGHCKECVCV 107 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE-----------------EeecCcceeEEEE
Confidence 344444 4999999999999875 1478999999999999984443321 2355666555554
Q ss_pred EEccCCCEEEEEeCCCeEEEEEccCCCcceecee--ecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC--CeE
Q 001190 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ--IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG--RKL 487 (1128)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~--~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g--~~~ 487 (1128)
. ..-........|+.+.+||.+..+.. .... +..-..--.|+++.++.+.++++.|+.+..|.++. ..+ +.+
T Consensus 108 ~--a~~~~~~~~~ad~~v~vw~~~~~e~~-~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v 184 (764)
T KOG1063|consen 108 V--ARSSVMTCKAADGTVSVWDKQQDEVF-LLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARV 184 (764)
T ss_pred E--eeeeEEEeeccCceEEEeecCCCcee-eehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEE
Confidence 3 33333333368999999999655511 1111 22222234566777765555788888888899988 433 456
Q ss_pred EEecCCCCCeEEEeccCCCC-ccEEEEEeccCcEEEEecCCCCc---------------------e----------eeec
Q 001190 488 FNFEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMGS---------------------R----------VDYD 535 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~---------------------~----------~~~~ 535 (1128)
..+.||.+.|.+++|..... .-+|++++.|..||+|.+..... . ..+.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 78899999999999976543 56889999999999997744330 0 0123
Q ss_pred CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc--eeeEec----cccCCceeEEEEeCCCCEEEEEECCCcE
Q 001190 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYA----GFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1128)
Q Consensus 536 ~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i 609 (1128)
+|..+|+++.|.|.+..|++++. |.++.+|...+.. -+.... ++........-|+|+++.+++-+..|..
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred CcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 78889999999999988998885 8999999876542 111111 1222246778899999999999999999
Q ss_pred EEEEC-CCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecc
Q 001190 610 KFWDM-DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1128)
Q Consensus 610 ~iwd~-~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 688 (1128)
++|.. +...........+|...|..++|+|.|.+|++.+.|.+-|++-.-..+.....+..++ .|.-.+.+++|-+.
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ--iHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ--IHGYDLTCLSFVNE 418 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc--cccccceeeehccC
Confidence 99983 3334444445567788999999999999999999999999986542222222221111 11122333333331
Q ss_pred cccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEE
Q 001190 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1128)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1128)
...++++....-+|+|+.... ... .-..+.
T Consensus 419 -------------------------------------~~~FVSgAdEKVlRvF~aPk~----fv~---------~l~~i~ 448 (764)
T KOG1063|consen 419 -------------------------------------DLQFVSGADEKVLRVFEAPKS----FVK---------SLMAIC 448 (764)
T ss_pred -------------------------------------CceeeecccceeeeeecCcHH----HHH---------HHHHHh
Confidence 112233444444455553210 000 000111
Q ss_pred E-----EEEecCcceEEEeeccc-eeEeeeccccCCCCCCc--eeeeeccceeccCCCcc--------ccccccCCCCCC
Q 001190 769 R-----LLYTNSAVGLLALGSNG-VQKLWKWHRNEQNPSGK--ATASAVPQHWLPSSGLL--------MANDVAGVNLEE 832 (1128)
Q Consensus 769 ~-----l~~s~~g~~l~~~~~dg-~i~lw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 832 (1128)
+ ..-.|+|..+-.-+-.. .+..=+...+....... .....-..+..+..... -...+.| |..
T Consensus 449 g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG--HGy 526 (764)
T KOG1063|consen 449 GKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG--HGY 526 (764)
T ss_pred CccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc--Cce
Confidence 1 11112221111111000 00000000000000000 00000000111111000 0112334 999
Q ss_pred CeeEEEeccCCCeEEEEe-C-----CeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 833 AVPCIALSKNDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
.|.+++.+|+|+++|++. . ..|++|+..+......+.+|+-.|+.++||| |+++|++.+.|.++.+|......
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeeccc
Confidence 999999999999999996 2 2499999999999999999999999999999 99999999999999999886432
Q ss_pred e----eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCC--cccceeEEeecCCCCCCCccEEEEcCC----CC
Q 001190 907 V----KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW--EKRKSVTIHIPAGKTPTGDTRVQFNAD----QV 976 (1128)
Q Consensus 907 ~----~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~v~~s~d----~~ 976 (1128)
. ....+.|+.-|.++.|+|+++++||+|.|++|++|..... +.+..+ ........++.+++.|- ..
T Consensus 606 ~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~----a~~~~~~aVTAv~~~~~~~~e~~ 681 (764)
T KOG1063|consen 606 KDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF----ACLKFSLAVTAVAYLPVDHNEKG 681 (764)
T ss_pred chhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh----chhccCCceeeEEeecccccccc
Confidence 1 2346789999999999999999999999999999999887 333322 11122277888888762 22
Q ss_pred -EEEEE-ecCeEEEEecCCc---------ccccccccCCCCCCCeEEEEEeeC----------CCEEEEEecCCcEEEEe
Q 001190 977 -RMLVV-HETQLAIYDASKM---------ERIRQWTPQDALSAPISCAVYSCN----------SQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 977 -~l~~~-~d~~i~v~d~~~~---------~~~~~~~~~~~h~~~v~~l~~s~d----------g~~l~t~~~dg~i~vwd 1035 (1128)
.+++| ..|.|.+|....- .....+.....|...|+.+.|+|- ...|++|++|..++|++
T Consensus 682 ~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~n 761 (764)
T KOG1063|consen 682 DVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFN 761 (764)
T ss_pred ceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEee
Confidence 45555 4899999996511 112223334456889999999974 23568999999999998
Q ss_pred cC
Q 001190 1036 AD 1037 (1128)
Q Consensus 1036 ~~ 1037 (1128)
+.
T Consensus 762 v~ 763 (764)
T KOG1063|consen 762 VD 763 (764)
T ss_pred cc
Confidence 74
No 21
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=4e-37 Score=334.33 Aligned_cols=566 Identities=13% Similarity=0.170 Sum_probs=415.4
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
.+.+.|+|++=+.+-- .+| ....|.+|. .|+.+. ++..+|.+.|.-+. |=|.++
T Consensus 74 ~lp~~I~alas~~~~v---y~A-~g~~i~~~~--rgk~i~------------------~~~~~~~a~v~~l~--~fGe~l 127 (910)
T KOG1539|consen 74 PLPDKITALASDKDYV---YVA-SGNKIYAYA--RGKHIR------------------HTTLLHGAKVHLLL--PFGEHL 127 (910)
T ss_pred CCCCceEEEEecCceE---EEe-cCcEEEEEE--ccceEE------------------EEeccccceEEEEe--eecceE
Confidence 4888999998776643 333 234666665 344432 34667777777655 458899
Q ss_pred EEEeCCCeEEEEEccCC-Ccceeceeec-ccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeE
Q 001190 422 GVAFTKHLIQLYSYAGS-NDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~-~~~~~~~~~~-~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~ 498 (1128)
+++..++.+.||+..++ +.+....++. ...+.|+++ ++|..-.-.++.|+.+|.+.+|+ .+++.+++++++...|+
T Consensus 128 ia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT 206 (910)
T KOG1539|consen 128 IAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRIT 206 (910)
T ss_pred EEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEeccccccee
Confidence 99999999999999884 2211111222 222236665 44543222588999999999999 99999999999999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceee
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1128)
++.-+|. -..++.|..+|+|.+++++..+....+....+.|++++|..||..+++.+. ..|.+.+||++..+.+.
T Consensus 207 ~ieqsPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~ 281 (910)
T KOG1539|consen 207 AIEQSPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLIN 281 (910)
T ss_pred EeccCCc--ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeee
Confidence 9987664 468999999999999999999999999888889999999999998877764 46889999999999988
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECC--CCeeeEEEecCCCCCCcceEEEc-CCCCEEEEEEcCCcEEE
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFS-KEGNLLAVTTADNGFKI 655 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s-p~~~~l~~~~~dg~i~i 655 (1128)
.....+.+.+....|.+....+++++.|..+++|=.+ .|.+.......+|..+..++.|. .+|..+.+++.|++++.
T Consensus 282 v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~ 361 (910)
T KOG1539|consen 282 VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRS 361 (910)
T ss_pred eeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhh
Confidence 8885555588889999999999999999998888554 44333333344667788999998 68999999999999998
Q ss_pred EEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCC
Q 001190 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVT 735 (1128)
Q Consensus 656 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 735 (1128)
+++.........-+.+... .++. ............+...++..........+.++..-.+
T Consensus 362 fs~~~e~~~~~l~~~~~~~-------------~~kk-------~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~ 421 (910)
T KOG1539|consen 362 FSVISESQSQELGQLHNKK-------------RAKK-------VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGK 421 (910)
T ss_pred hhhhHHHHhHhhccccccc-------------cccc-------ccccchhhhcCCcceeeecccchhhhhcceeEEecCc
Confidence 8875431111100000000 0000 0000000111112222222222333344555555566
Q ss_pred CCCCcceeEEEeeCCceeE-EEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceec
Q 001190 736 DKPKPWQLAEIVDSGQCRL-VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1128)
Q Consensus 736 ~~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 814 (1128)
...+.|+............ -.+ ......+++++.++.|+..+.|.+.|.|-+|+++.
T Consensus 422 ~~~~tW~~~n~~~G~~~L~~~~~---~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS------------------- 479 (910)
T KOG1539|consen 422 RSAYTWNFRNKTSGRHVLDPKRF---KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS------------------- 479 (910)
T ss_pred ceEEEEeccCcccccEEecCccc---cccCcceEEEEEeccCceEEEeccCCeEEEEEccc-------------------
Confidence 7778888875433221111 011 11446789999999999999999999999987653
Q ss_pred cCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeC
Q 001190 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1128)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~ 893 (1128)
|...........|..+|+.++...-++.+++++ +|.+++||.....++..+. -...++++.++. ...++|.+..
T Consensus 480 ---Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~d 554 (910)
T KOG1539|consen 480 ---GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIALD 554 (910)
T ss_pred ---CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhcC
Confidence 332222222224999999999988888899887 9999999999888777776 345678888888 7789999999
Q ss_pred CCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC
Q 001190 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 973 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 973 (1128)
|-.|+++|..+.+.++.|.||++.|++++|||||++|++++.|++|++||+-++.++..+.+. .+...+.|+|
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-------~~~~sls~SP 627 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-------SPCTSLSFSP 627 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-------CcceeeEECC
Confidence 999999999999999999999999999999999999999999999999999999988777665 7889999999
Q ss_pred CCCEEEEEe--cCeEEEEecCC
Q 001190 974 DQVRMLVVH--ETQLAIYDASK 993 (1128)
Q Consensus 974 d~~~l~~~~--d~~i~v~d~~~ 993 (1128)
+|.+|++.+ ...|++|.-.+
T Consensus 628 ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 628 NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCCEEEEEEecCceEEEEEchh
Confidence 999999986 36788887543
No 22
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.7e-40 Score=329.21 Aligned_cols=284 Identities=21% Similarity=0.312 Sum_probs=256.9
Q ss_pred CCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c
Q 001190 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1128)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~ 482 (1128)
|.+.+|..+.||+|++.||||+-+|.++||+..+...+. +|.||.+.|.++.|+|......++||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 467899999999999999999999999999999875544 699999999999999983222799999999999999 5
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCC
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~ 562 (1128)
...++..+.+|..+|..++|+| +|++|+|++.|.+-++||+.+........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 5588999999999999999988 6789999999999999999999999999999999999999999999999985
Q ss_pred CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CC
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EG 641 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~ 641 (1128)
|..-+|||+++|+.+..+.+|.+ .|..+.|+|+|..|++||.|++++|||++....+.++..|. +-|..|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~--nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHS--NLVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceeccccc--chhhheEecccCC
Confidence 88889999999999999999887 89999999999999999999999999999999988888665 4799999999 88
Q ss_pred CEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCC
Q 001190 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (1128)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1128)
.+|++++.|++++||...+. .+++.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksL----------------------------------------------------- 426 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSL----------------------------------------------------- 426 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhh-----------------------------------------------------
Confidence 99999999999999987655 222222
Q ss_pred CCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeee
Q 001190 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1128)
Q Consensus 722 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~ 792 (1128)
.||.++|.++.+++|+..+++++.|.++++|.
T Consensus 427 ---------------------------------------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 ---------------------------------------AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---------------------------------------cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 34889999999999999999999999999994
No 23
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.2e-37 Score=325.20 Aligned_cols=594 Identities=15% Similarity=0.190 Sum_probs=409.4
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC---EEEEEe
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN---YVGVAF 425 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~ 425 (1128)
...|.|.+ ++|.| ....|.+||..+.... ..+.||.++|+|+.|-|+.+ ++++|+
T Consensus 19 v~sw~~~~--~vafG-a~~~Iav~dp~k~~i~-------------------t~l~GH~a~VnC~~~l~~s~~~a~~vsG~ 76 (764)
T KOG1063|consen 19 VSSWGPGG--LVAFG-AGPAIAVADPEKILIV-------------------TTLDGHVARVNCVHWLPTSEIVAEMVSGD 76 (764)
T ss_pred cccccccc--eEEec-CCceEEEeCcccceeE-------------------EeccCCccceEEEEEcccccccceEEEcc
Confidence 34456666 45655 5679999998765332 24899999999999999888 899999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCe---EEEecCCCCCe--EEE
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK---LFNFEGHEAPV--YSI 500 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~---~~~~~~h~~~v--~~~ 500 (1128)
.|+.|++|.+.. +.+....++.+|...+.++ ...-. ...+...|+++.+||..+.. ...+.-....+ .|+
T Consensus 77 sD~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv--~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 77 SDGRVILWKLRD-EYLIKIYTIQGHCKECVCV--VARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred CCCcEEEEEEee-hheEEEEeecCcceeEEEE--Eeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 999999999984 3444555677776655554 43332 22233689999999953333 22332222222 455
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCC--CCceeeecCCCCeEEEEEEcCCCC---eEEEeeeccCCCceEEEEeCCCCc
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDT--MGSRVDYDAPGHWCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGT 575 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~--~~~~~~~~~~~~~i~~~~~s~~g~---~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1128)
++.+.++.-.++.|+.+..|.++.-.. ......+.+|..+|.+++|...+. +|++++ +|..|+||.+.-+.
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~ 227 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGD 227 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecC
Confidence 555544444556677778888885442 244557889999999999987654 444444 79999999764322
Q ss_pred ---------------------ee----------eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC--eeeEE
Q 001190 576 ---------------------IK----------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTS 622 (1128)
Q Consensus 576 ---------------------~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~ 622 (1128)
.. ..+.||.+ -|.++.|+|.+..|++++.|.++.+|...+. -.+..
T Consensus 228 ~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~ 306 (764)
T KOG1063|consen 228 DEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV 306 (764)
T ss_pred CccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEE
Confidence 11 11237776 8999999999999999999999999987554 33333
Q ss_pred Eec---CCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCC
Q 001190 623 TDA---EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (1128)
Q Consensus 623 ~~~---~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 699 (1128)
... .+.........|+|+++.+++-+..|..++|.....
T Consensus 307 vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~-------------------------------------- 348 (764)
T KOG1063|consen 307 VRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK-------------------------------------- 348 (764)
T ss_pred EEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc--------------------------------------
Confidence 221 122334788999999999999999999999972221
Q ss_pred cceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceE
Q 001190 700 NCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 779 (1128)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 779 (1128)
..|.. .+...||.+.|..++|.|.|.++
T Consensus 349 ---------------------------------------~~w~~-------------~~~iSGH~~~V~dv~W~psGefl 376 (764)
T KOG1063|consen 349 ---------------------------------------TFWTQ-------------EPVISGHVDGVKDVDWDPSGEFL 376 (764)
T ss_pred ---------------------------------------cceee-------------ccccccccccceeeeecCCCCEE
Confidence 01111 11114599999999999999999
Q ss_pred EEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEE
Q 001190 780 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFN 858 (1128)
Q Consensus 780 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd 858 (1128)
++++.|.+-|++---..+. . |.- +.++ .-|...++|++|-+....+++|. ...+|+|+
T Consensus 377 Lsvs~DQTTRlFa~wg~q~------------~-wHE-----iaRP---QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 377 LSVSLDQTTRLFARWGRQQ------------E-WHE-----IARP---QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred EEeccccceeeeccccccc------------c-eee-----eccc---ccccccceeeehccCCceeeecccceeeeeec
Confidence 9999999988874221110 0 111 0000 12778888888877444455555 45578886
Q ss_pred CC-------------------------------------------CceE-------------------------------
Q 001190 859 MM-------------------------------------------TFKV------------------------------- 864 (1128)
Q Consensus 859 ~~-------------------------------------------~~~~------------------------------- 864 (1128)
.. +|..
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 42 0100
Q ss_pred --EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC-----cEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCC
Q 001190 865 --MTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (1128)
Q Consensus 865 --~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg 937 (1128)
+..+.||...|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.++|||||++|++++.|+
T Consensus 516 PEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred hhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 122357888999999999 999999998543 599999999988889999999999999999999999999999
Q ss_pred cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCc--ccccccccCCCCCCCeEEEE
Q 001190 938 QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKM--ERIRQWTPQDALSAPISCAV 1014 (1128)
Q Consensus 938 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~--~~~~~~~~~~~h~~~v~~l~ 1014 (1128)
++.+|......... +.......|. .-|....|+||+.++++++ |.+|.+|...+. +.+..+... .+...|++++
T Consensus 595 t~sl~~~~~~~~~e-~~fa~~k~Ht-RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~-~~~~aVTAv~ 671 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDE-FRFACLKAHT-RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL-KFSLAVTAVA 671 (764)
T ss_pred eEEeeeeecccchh-hhhccccccc-eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh-ccCCceeeEE
Confidence 99999986543221 2222233333 5677889999999999976 999999999988 555554332 2389999999
Q ss_pred EeeC-----CCEEEEEecCCcEEEEecCCCceEEEeC---CCCCCCCcccCCCCccceEEEEEecCC---------CCEE
Q 001190 1015 YSCN-----SQLVFATFCDGNIGVFDADTLRLRCYIA---PSTYLSPSVLNGSQTVYPLVVAAHPLE---------PNQF 1077 (1128)
Q Consensus 1015 ~s~d-----g~~l~t~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~---------~~~l 1077 (1128)
|.|- +..+++|-+.|.|.+|....-....... ...-.+.. ..+...|..+.|.|.. ...|
T Consensus 672 ~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~aV~rl~w~p~~~~~~~~~~~~l~l 748 (764)
T KOG1063|consen 672 YLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCAT---IGPDSAVNRLLWRPTCSDDWVEDKEWLNL 748 (764)
T ss_pred eeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccc---cChHHhhheeEeccccccccccccceeEE
Confidence 9872 2367889999999999965211111110 00001111 1344567889999752 2247
Q ss_pred EEEECCCcEEEEcCC
Q 001190 1078 AIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1078 ~s~~~dg~i~iWd~~ 1092 (1128)
++|++|..++++++.
T Consensus 749 a~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 749 AVGGDDESVRIFNVD 763 (764)
T ss_pred eeecccceeEEeecc
Confidence 999999999999875
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-38 Score=343.21 Aligned_cols=275 Identities=19% Similarity=0.301 Sum_probs=241.1
Q ss_pred CCCCCcceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceec--------cccccc----ccccccCcc
Q 001190 330 LDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV--------SKPFKI----WDMAACSLP 396 (1128)
Q Consensus 330 ~~~~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~--------~~~~~~----~~~~~~~~~ 396 (1128)
-..+|..+++++. ....|+|+.||+|++ +||.|..|..|++|.+...+... ...... -++.+....
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 4567888899988 667899999999999 89999999999999998543211 000000 112222233
Q ss_pred ccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCe
Q 001190 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1128)
Q Consensus 397 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~ 476 (1128)
.....+.||+++|..+.|+|+.++|++|+.|++|++|.+.+..++- .+.||..+|+++.|+|-|- ++||+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3445699999999999999999999999999999999999987665 4779999999999999998 8999999999
Q ss_pred EEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 477 i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
.++|. ....+++.+.||-+.|.|+.||| +..++++||.|.+||+||+.++..+..+.+|.++|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 99999 88899999999999999999998 5579999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 617 (1128)
++ .++.|.+||+.+++++..+.+|.+ .+.++.|+.+|..||+||.|..|++||+..-
T Consensus 595 g~----ed~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GD----EDGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cc----cCCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 98 499999999999999999999965 9999999999999999999999999998653
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.1e-37 Score=295.25 Aligned_cols=292 Identities=16% Similarity=0.248 Sum_probs=262.3
Q ss_pred ceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 336 ~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
...++|. |...|.++.|++|.+ .++++|.||.+.|||.-+...++. +.-....|..+||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~ 105 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAY 105 (343)
T ss_pred eeEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEE
Confidence 3445565 999999999999999 679999999999999888766543 4446789999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCC---cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSN---DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~---~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~ 490 (1128)
+|.|+++|.|+-|+...||++.+.+ .++....+.+|++.+.++.|.+|+. |+|+|.|.+..+|| .+|+.+..|
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEe
Confidence 9999999999999999999998652 2344446889999999999999886 89999999999999 999999999
Q ss_pred cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEe
Q 001190 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1128)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd 570 (1128)
.||.+.|.++.+.|+ +++.+++|+-|+..++||++.+.+...+.+|...|++++|.|+|.-+++++ .|++.++||
T Consensus 183 ~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS----DD~tcRlyD 257 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS----DDATCRLYD 257 (343)
T ss_pred cCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC----CCceeEEEe
Confidence 999999999999886 778999999999999999999999999999999999999999999999998 499999999
Q ss_pred CCCCceeeEeccccC-CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc
Q 001190 571 ESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1128)
Q Consensus 571 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 649 (1128)
++..+.+..|..... ..|.+++|+..|++|++|..|..+.+||.-.++.+..+.+| .++|.|+..+|||..+++|+-
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH--eNRvScl~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH--ENRVSCLGVSPDGMAVATGSW 335 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--CCeeEEEEECCCCcEEEecch
Confidence 999999888875432 45889999999999999999999999999999999888855 558999999999999999999
Q ss_pred CCcEEEEE
Q 001190 650 DNGFKILA 657 (1128)
Q Consensus 650 dg~i~iw~ 657 (1128)
|.+++||.
T Consensus 336 Ds~lriW~ 343 (343)
T KOG0286|consen 336 DSTLRIWA 343 (343)
T ss_pred hHheeecC
Confidence 99999994
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.9e-36 Score=288.57 Aligned_cols=287 Identities=16% Similarity=0.219 Sum_probs=257.5
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
++|+||.+.|.++.|++|+++|++++.||.+.|||.-+...+. .+.-....|..++|+|.|+ ++++|+-|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEE
Confidence 3599999999999999999999999999999999998876555 3556778999999999999 8999999999999
Q ss_pred Ee-cCC------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcC-CCC
Q 001190 480 WE-LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGS 551 (1128)
Q Consensus 480 Wd-~~g------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~-~g~ 551 (1128)
|+ .+. +..+.+.+|.+.+.++.|.. | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 99 322 23467899999999999865 3 4799999999999999999999999999999999999999 999
Q ss_pred eEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
.+++++. |...++||++.+..+++|.+|.. .|..++|.|+|.-+++|+.|++.++||++..+.+..+.......+
T Consensus 201 tFvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 201 TFVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred eEEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 9999985 89999999999999999999998 899999999999999999999999999999999999988777788
Q ss_pred cceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCC
Q 001190 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (1128)
|++++||..|++|..|..|.++.+||.-.++.. .
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v-g--------------------------------------------- 309 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV-G--------------------------------------------- 309 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeeccccceE-E---------------------------------------------
Confidence 999999999999999999999999997544110 0
Q ss_pred cccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEee
Q 001190 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1128)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw 791 (1128)
.+ .+|.++|.++..+|||..+++++.|.+++||
T Consensus 310 --------------------------------------------~L---~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 310 --------------------------------------------VL---AGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred --------------------------------------------Ee---eccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 01 2399999999999999999999999999999
Q ss_pred e
Q 001190 792 K 792 (1128)
Q Consensus 792 ~ 792 (1128)
.
T Consensus 343 ~ 343 (343)
T KOG0286|consen 343 A 343 (343)
T ss_pred C
Confidence 3
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-35 Score=307.13 Aligned_cols=464 Identities=16% Similarity=0.226 Sum_probs=350.3
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+..|+..|.++.|+|...+++++-.+|.|.|||.++...++. +.-..-+|++..|.+--+ ++++|++|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks---feV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS---FEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee---eeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 455899999999999999999999999999999999887774 556788999999999888 899999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC-CceeeecCCCCeEEEEEEcC-CCCeEEEeee
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGT 558 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~ 558 (1128)
.+++.++.|..|.+-|.+++.||.. .++++++.|-+|++||.+.. .+..++.+|.+-|..++|+| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999954 79999999999999999875 45678999999999999999 5668888885
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCC--CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
|++|++|.+....+..++.+|.. .|.++.+-+.| .+|++|+.|.+|+|||.++..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999998 89999997654 6999999999999999999999999986655 899999
Q ss_pred EcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCccccc
Q 001190 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1128)
Q Consensus 637 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1128)
|+|.-.++++|+.||+++||+..+- +....+.-
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999987654 11111100
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeecccc
Q 001190 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 796 (1128)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~ 796 (1128)
..+++++++..+.+..++.|..+|.+.+=
T Consensus 268 ----------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~----- 296 (794)
T KOG0276|consen 268 ----------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK----- 296 (794)
T ss_pred ----------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE-----
Confidence 22355666666666667777777666541
Q ss_pred CCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeC--CeEEEE------ECCCceEEE--
Q 001190 797 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG--GKISLF------NMMTFKVMT-- 866 (1128)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d--g~i~vw------d~~~~~~~~-- 866 (1128)
.......+.+++.|+.+-+... ..+.+- ++..|+.+.
T Consensus 297 ---------------------------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~Ls 343 (794)
T KOG0276|consen 297 ---------------------------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLS 343 (794)
T ss_pred ---------------------------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccch
Confidence 1122223444555554433321 111111 233333321
Q ss_pred --EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001190 867 --TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944 (1128)
Q Consensus 867 --~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~ 944 (1128)
.+..-.-....++-+| +|+++++++ ||.-.||..-..+ ..+.+......|++|....+.--.++.|+++
T Consensus 344 vKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~-- 414 (794)
T KOG0276|consen 344 VKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF-- 414 (794)
T ss_pred hhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--
Confidence 1111111234678889 898887665 8888888632211 1244666788899998888888778899998
Q ss_pred CCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEE
Q 001190 945 DTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFA 1024 (1128)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t 1024 (1128)
++.+..+.+.... ...+--.|.+|.+.+++.+++||..++..++.+... ...+.|+.+|.+++.
T Consensus 415 knfke~ksi~~~~----------~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~------~k~v~w~d~g~lVai 478 (794)
T KOG0276|consen 415 KNFKEHKSIRPDM----------SAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVT------SKHVYWSDNGELVAI 478 (794)
T ss_pred ecceecccccccc----------ceeeecCCceEEEEeCCeEEEEEcccceEEEEEeec------cceeEEecCCCEEEE
Confidence 5554433332221 122223456677778999999999999999988653 458899999999888
Q ss_pred EecCCcEEEEec
Q 001190 1025 TFCDGNIGVFDA 1036 (1128)
Q Consensus 1025 ~~~dg~i~vwd~ 1036 (1128)
++.|. .+|+..
T Consensus 479 ~~d~S-fyil~~ 489 (794)
T KOG0276|consen 479 AGDDS-FYILKF 489 (794)
T ss_pred EecCc-eeEEEe
Confidence 87554 455443
No 28
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-34 Score=314.37 Aligned_cols=550 Identities=17% Similarity=0.249 Sum_probs=387.2
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
.+..|-.++|+|... ++.++-..|.|++||++-+.++.. +.+|+++|+.++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 456789999999988 678888999999999999888764 889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~ 501 (1128)
+|++|-.|+||++.+.+++. ++.||-+.|+.+.|++.-. +++|+|+|.+|+||+ .+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987765 6889999999999999888 899999999999999 99999999999999999999
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCC-----------------------------ceeeecCCCCeEEEEEEcCCCCe
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------------SRVDYDAPGHWCTTMLYSADGSR 552 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~-----------------------------~~~~~~~~~~~i~~~~~s~~g~~ 552 (1128)
|+|.+ ..++++|-|.+||+||+...+ .+..+.+|...|+-++|.|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99976 489999999999999984211 12356678889999999999999
Q ss_pred EEEeeeccCCCceEEEEeCCCCc--eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCC
Q 001190 553 LFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
+++|+. |..|++|.....+ .+.+..+|.+ .|.++-|+|..+.+++.|+|+.|+|||+.....++++.... .
T Consensus 221 iVSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren--d 293 (1202)
T KOG0292|consen 221 IVSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN--D 293 (1202)
T ss_pred EEecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccC--C
Confidence 999984 8899999987665 4667889988 89999999999999999999999999999999999987543 3
Q ss_pred CcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCC
Q 001190 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 710 (1128)
+.+.++.+|..++++.|.+.|. .+|.+... +.. .+++
T Consensus 294 RFW~laahP~lNLfAAgHDsGm-~VFkleRE-rpa-----------------~~v~------------------------ 330 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAGHDSGM-IVFKLERE-RPA-----------------YAVN------------------------ 330 (1202)
T ss_pred eEEEEEecCCcceeeeecCCce-EEEEEccc-Cce-----------------EEEc------------------------
Confidence 7899999999999988876554 45554321 000 0110
Q ss_pred CcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEe
Q 001190 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 790 (1128)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l 790 (1128)
+..|.-. .|..|+.
T Consensus 331 -----------------------------------------------------------------~n~LfYv-kd~~i~~ 344 (1202)
T KOG0292|consen 331 -----------------------------------------------------------------GNGLFYV-KDRFIRS 344 (1202)
T ss_pred -----------------------------------------------------------------CCEEEEE-ccceEEe
Confidence 0001111 1334444
Q ss_pred eeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe---CCeEEEEECCCceEEE-
Q 001190 791 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMT- 866 (1128)
Q Consensus 791 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~- 866 (1128)
+|+.+....+ +-.++.+ + ....+++++.++|....+..++ .+.-.++.+.......
T Consensus 345 ~d~~t~~d~~-----------v~~lr~~--------g-~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~ 404 (1202)
T KOG0292|consen 345 YDLRTQKDTA-----------VASLRRP--------G-TLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVS 404 (1202)
T ss_pred eeccccccce-----------eEeccCC--------C-cccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccC
Confidence 4443211000 0000000 0 1245688899999777666664 3555555543221100
Q ss_pred --EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001190 867 --TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 944 (1128)
Q Consensus 867 --~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~ 944 (1128)
.-........++-... +++.+.--.+..+.+-++.+. ..+++... ..+..+-+...|.+|+.. ...|.++|+
T Consensus 405 ~~~~~~k~tG~~a~fvar--Nrfavl~k~~~~v~ik~l~N~-vtkkl~~~-~~~~~IF~ag~g~lll~~--~~~v~lfdv 478 (1202)
T KOG0292|consen 405 DGKDVKKGTGEGALFVAR--NRFAVLDKSNEQVVIKNLKNK-VTKKLLLP-ESTDDIFYAGTGNLLLRS--PDSVTLFDV 478 (1202)
T ss_pred CchhhhcCCCCceEEEEe--cceEEEEecCcceEEecccch-hhhcccCc-ccccceeeccCccEEEEc--CCeEEEEEe
Confidence 0000112233443332 233333333555666555433 22333321 244556666667666543 346999999
Q ss_pred CCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEE
Q 001190 945 DTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFA 1024 (1128)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t 1024 (1128)
+.++.+..+.. ..+..+.||+|..+++.-+...|.|++.. .+.+..+.. .-.|.+-+|..||-+|++
T Consensus 479 Qq~~~~~si~~--------s~vkyvvws~dm~~vAll~Kh~i~i~~kk-L~l~~sihE----tiriksgawde~gVfiYt 545 (1202)
T KOG0292|consen 479 QQKKKVGSIKV--------SKVKYVVWSNDMSRVALLSKHTITIADKK-LELLCSIHE----TIRIKSGAWDEDGVFIYT 545 (1202)
T ss_pred ecceEEEEEec--------CceeEEEEcCccchhhhcccceEEEEecc-hhheecchh----eeEeeeceeccCceEEEE
Confidence 98776555444 67899999999999998888999999854 233333322 567788889888888887
Q ss_pred EecCCcEEEEecCCCc--eEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1025 TFCDGNIGVFDADTLR--LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1025 ~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
.... |+ |-+.+|. .+.++. .+.+++.+ .++.+.+-..|+.+.+.++.-.|
T Consensus 546 T~nH--ik-Yal~~GD~GIikTLd-------------~~iyitkv-----~gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 546 TLNH--IK-YALENGDSGIIKTLD-------------KPIYITKV-----KGNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred ehhh--hh-hhhccCCcceEEecc-------------cceEEEEe-----eCCEEEEEecCCCeEEEeechHH
Confidence 6632 22 2333322 222333 34556666 47888888888888887765443
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.4e-36 Score=278.93 Aligned_cols=283 Identities=16% Similarity=0.253 Sum_probs=239.0
Q ss_pred CcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEcc
Q 001190 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA 436 (1128)
Q Consensus 357 ~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~ 436 (1128)
.-+|++++.|.+|++|...+|.+..+ +...++.|..+...||++.||+++.. .|++||++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~ 69 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLN 69 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEcc
Confidence 44899999999999999999998764 45567889999999999999998765 59999999
Q ss_pred CCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec
Q 001190 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI 516 (1128)
Q Consensus 437 ~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 516 (1128)
++.+. ...++.+|++.|+++.|..||+ .++|||+||+++|||.......+...|..+|+++..+|. ..-|++|..
T Consensus 70 S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpn--QteLis~dq 144 (311)
T KOG0315|consen 70 SNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPN--QTELISGDQ 144 (311)
T ss_pred CCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCC--cceEEeecC
Confidence 98764 4457999999999999999999 899999999999999333444555568899999999884 468999999
Q ss_pred cCcEEEEecCCCCceeeecCC-CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC------ceeeEeccccCCcee
Q 001190 517 DGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------TIKRTYAGFRKKSNG 589 (1128)
Q Consensus 517 dg~i~~wd~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~~v~ 589 (1128)
+|.|++||+....+...+..+ ...|.++.+.|||.+++.+. ..|..++|++-+. +++..++.|.. -+.
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n----nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il 219 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN----NKGNCYVWRLLNHQTASELEPVHKFQAHNG-HIL 219 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec----CCccEEEEEccCCCccccceEhhheecccc-eEE
Confidence 999999999887666655443 45899999999999999887 4889999998764 35566777776 788
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCcccccccc
Q 001190 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (1128)
Q Consensus 590 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 669 (1128)
.+.++|++++|+++|.|.+++||+.++. ....+...++...+..++||.||++|++|+.|+.+++|++..+ +..+...
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy~ 297 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQYQ 297 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeeecC
Confidence 8999999999999999999999999988 4444445566678999999999999999999999999999998 4444555
Q ss_pred CC
Q 001190 670 NP 671 (1128)
Q Consensus 670 ~~ 671 (1128)
+|
T Consensus 298 gh 299 (311)
T KOG0315|consen 298 GH 299 (311)
T ss_pred Cc
Confidence 54
No 30
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=8.4e-33 Score=283.50 Aligned_cols=525 Identities=16% Similarity=0.217 Sum_probs=381.3
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--------eEEEEe-c
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--------LIKVWE-L 482 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--------~i~vWd-~ 482 (1128)
+-+-|.|..+.-.. +.+.+++++..... -+.+|+..|.|++.+||-- .+++|-.-| .+++|| .
T Consensus 71 ly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWdsv 142 (626)
T KOG2106|consen 71 LYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDSV 142 (626)
T ss_pred eEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeecccc
Confidence 45667777655432 34567777553211 2669999999999999876 677665544 599999 8
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEE--eccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFST--AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
+-..++.+......|.+++|++...|.++... +.+..+.+||...+............+....|.|.+..++...
T Consensus 143 ~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~--- 219 (626)
T KOG2106|consen 143 TLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITC--- 219 (626)
T ss_pred cceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEe---
Confidence 88888988888888999999998877777665 3456788999988777766666777889999999776555444
Q ss_pred CCCceEEEEeCCCCceee---EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE
Q 001190 561 DGDSFLVEWNESEGTIKR---TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1128)
+.+.+..|+.+.+.+.+ .|+.+....|.|++|.++|. +++|..+|.|.||+..+.+..+... .|.+.|.+++.
T Consensus 220 -Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~ 295 (626)
T KOG2106|consen 220 -GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCM 295 (626)
T ss_pred -CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEE
Confidence 48999999999886654 46666666799999999875 7899999999999998888777766 44558999999
Q ss_pred cCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccC
Q 001190 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIING 717 (1128)
Q Consensus 638 sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1128)
-.+|.+|- |+.|..|..||- ..+..+.. ......+++..++=...+
T Consensus 296 lr~GtllS-GgKDRki~~Wd~--~y~k~r~~---elPe~~G~iRtv~e~~~d---------------------------- 341 (626)
T KOG2106|consen 296 LRDGTLLS-GGKDRKIILWDD--NYRKLRET---ELPEQFGPIRTVAEGKGD---------------------------- 341 (626)
T ss_pred ecCccEee-cCccceEEeccc--cccccccc---cCchhcCCeeEEecCCCc----------------------------
Confidence 99997666 999999999992 22222222 222233445544322111
Q ss_pred CCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccC
Q 001190 718 VDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 797 (1128)
Q Consensus 718 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~ 797 (1128)
++.|...+.|-.=.+. ..... .. .+|......++..|+...+++++.|+.+++|+-.
T Consensus 342 -----------i~vGTtrN~iL~Gt~~-----~~f~~-~v---~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~--- 398 (626)
T KOG2106|consen 342 -----------ILVGTTRNFILQGTLE-----NGFTL-TV---QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH--- 398 (626)
T ss_pred -----------EEEeeccceEEEeeec-----CCceE-EE---EecccceeeEEcCCChhheeeccCcceEEEccCC---
Confidence 2222222222111111 11111 11 3488899999999999999999999999999711
Q ss_pred CCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCee
Q 001190 798 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAST 876 (1128)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~ 876 (1128)
--.|... ..+++.|+.|+|.| .+|.|. .|...+.|+++...+..-.. ..+++
T Consensus 399 ------------k~~wt~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls 451 (626)
T KOG2106|consen 399 ------------KLEWTKI-------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLS 451 (626)
T ss_pred ------------ceeEEEE-------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceE
Confidence 0123221 46789999999999 888887 89999999999666555444 88999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEecccc-eeeecc-cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccce--
Q 001190 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKL-KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS-- 952 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l-~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~-- 952 (1128)
+++|+| +|.+||.|+.|+.|+||.+..+ ...... +.|..+|+.+.||+|+++|.+-+.|-.|-.|....-+....
T Consensus 452 ~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~k 530 (626)
T KOG2106|consen 452 VVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVK 530 (626)
T ss_pred EEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceec
Confidence 999999 9999999999999999999754 333222 23348999999999999999999999999994332221111
Q ss_pred ----------eEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCE
Q 001190 953 ----------VTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL 1021 (1128)
Q Consensus 953 ----------~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1021 (1128)
+-+...-+.....+..++-+.+.+++++++ .|.|++|...-...-.......+|++-|++++|+.+...
T Consensus 531 DvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~ 610 (626)
T KOG2106|consen 531 DVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSH 610 (626)
T ss_pred ceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCce
Confidence 111222233335666777788888999986 689999987654443333333456999999999999999
Q ss_pred EEEEecCCcEEEEec
Q 001190 1022 VFATFCDGNIGVFDA 1036 (1128)
Q Consensus 1022 l~t~~~dg~i~vwd~ 1036 (1128)
+.+.+.|.+|..|++
T Consensus 611 li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 611 LISTGKDTSIMQWRL 625 (626)
T ss_pred EEecCCCceEEEEEe
Confidence 988779999999987
No 31
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-33 Score=307.53 Aligned_cols=482 Identities=18% Similarity=0.297 Sum_probs=353.6
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+..-+..|..++|+|...+++++-.+|.|++||..-+.++. .|..|.++|+.++|+|.+. +++||++|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44467789999999999999999999999999999988776 5889999999999999999 899999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+.+++.++.||-+.|..+.||+. -.+|+++|.|.+|++|++.+.+++..+++|.+-|.|..|.|....+++++.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 999999999999999999999884 379999999999999999999999999999999999999999999999986
Q ss_pred CCCceEEEEeCCCCc-----------------------------eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEE
Q 001190 561 DGDSFLVEWNESEGT-----------------------------IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 611 (1128)
|.+|++||+...+ ....+.||.. .|.-++|+|.-..+++|+.|+.|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 8999999985311 1234567766 7888999999999999999999999
Q ss_pred EECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeeccccc
Q 001190 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1128)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 691 (1128)
|.+..-+.-..-...+|.+.|.++-|+|...++++.+.|++|+|||+.... .++.++
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt-~v~tfr---------------------- 289 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT-SVQTFR---------------------- 289 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc-ceeeee----------------------
Confidence 999877766655566788899999999999999999999999999987641 111110
Q ss_pred ccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEE
Q 001190 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (1128)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 771 (1128)
...++.+.++
T Consensus 290 ----------------------------------------------------------------------rendRFW~la 299 (1202)
T KOG0292|consen 290 ----------------------------------------------------------------------RENDRFWILA 299 (1202)
T ss_pred ----------------------------------------------------------------------ccCCeEEEEE
Confidence 0345667888
Q ss_pred EecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeC
Q 001190 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG 851 (1128)
Q Consensus 772 ~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d 851 (1128)
..|..+.+++ +.|+-+.++.++. +.++. ++ ++..|....|
T Consensus 300 ahP~lNLfAA-gHDsGm~VFkleR-----------------------------------Erpa~--~v--~~n~LfYvkd 339 (1202)
T KOG0292|consen 300 AHPELNLFAA-GHDSGMIVFKLER-----------------------------------ERPAY--AV--NGNGLFYVKD 339 (1202)
T ss_pred ecCCcceeee-ecCCceEEEEEcc-----------------------------------cCceE--EE--cCCEEEEEcc
Confidence 8898885555 4555556665431 22233 33 3344444558
Q ss_pred CeEEEEECCCceEE--EEeeCC---CCCeeEEEEcCCCCCEEEEEeCC-CcEEEEecccceee----ecccccccCeeEE
Q 001190 852 GKISLFNMMTFKVM--TTFMSP---PPASTFLAFHPQDNNIIAIGTED-STIHIYNVRVDEVK----SKLKGHQKRITGL 921 (1128)
Q Consensus 852 g~i~vwd~~~~~~~--~~~~~~---~~~v~~l~~s~~d~~~lasg~~d-g~v~iwd~~~~~~~----~~l~~h~~~V~~l 921 (1128)
..|+-+|+.+.+-. ..++.. ..++.++.|+|..+..+++...| |.-.++.+...... .... ......++
T Consensus 340 ~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~-k~tG~~a~ 418 (1202)
T KOG0292|consen 340 RFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVK-KGTGEGAL 418 (1202)
T ss_pred ceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhh-cCCCCceE
Confidence 88999999875543 334332 25688999999555555554433 44445544432110 0000 11122233
Q ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccc
Q 001190 922 AFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWT 1001 (1128)
Q Consensus 922 ~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~ 1001 (1128)
|-...++.+---.+..+.+=++.+... +.+... .....+-+..+|.+|+. +...|.+||+...+.+..+.
T Consensus 419 -fvarNrfavl~k~~~~v~ik~l~N~vt-kkl~~~-------~~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 419 -FVARNRFAVLDKSNEQVVIKNLKNKVT-KKLLLP-------ESTDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred -EEEecceEEEEecCcceEEecccchhh-hcccCc-------ccccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe
Confidence 322223333223355566666655321 111111 23445566666665544 56789999999888887776
Q ss_pred cCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 1002 PQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1002 ~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
-..|..+.||+|+.+++.-+ ..+|.|.+. ..+.++.+.
T Consensus 489 -----~s~vkyvvws~dm~~vAll~-Kh~i~i~~k-kL~l~~sih 526 (1202)
T KOG0292|consen 489 -----VSKVKYVVWSNDMSRVALLS-KHTITIADK-KLELLCSIH 526 (1202)
T ss_pred -----cCceeEEEEcCccchhhhcc-cceEEEEec-chhheecch
Confidence 57789999999999888765 557888874 355555554
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.3e-35 Score=271.90 Aligned_cols=296 Identities=15% Similarity=0.222 Sum_probs=251.5
Q ss_pred ccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc--eeeEeccccC
Q 001190 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRK 585 (1128)
Q Consensus 508 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~ 585 (1128)
.-+|++++.|.+||+|...++.+..++......|+.+.+.||++.|++++ ...|++||+++++ ++.+|.+|.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC
Confidence 35899999999999999999999999999999999999999999999986 7789999999875 6899999987
Q ss_pred CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCcccc
Q 001190 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1128)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~ 665 (1128)
.|..+.|..+|+++++||+||+++|||++.......+. +..+|+++..+|+...|++|..+|.|++||+.+....-
T Consensus 85 -NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~---~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 85 -NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ---HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH 160 (311)
T ss_pred -ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc---CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc
Confidence 89999999999999999999999999999965555554 34589999999999999999999999999997652110
Q ss_pred ccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEE
Q 001190 666 RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1128)
Q Consensus 666 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 745 (1128)
.+
T Consensus 161 -~l----------------------------------------------------------------------------- 162 (311)
T KOG0315|consen 161 -EL----------------------------------------------------------------------------- 162 (311)
T ss_pred -cc-----------------------------------------------------------------------------
Confidence 00
Q ss_pred EeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccc
Q 001190 746 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 825 (1128)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1128)
+|+ ....|.++.+.|||..++++...|..++|++...... +...-...+
T Consensus 163 -----------iPe---~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------------s~l~P~~k~ 211 (311)
T KOG0315|consen 163 -----------IPE---DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------------SELEPVHKF 211 (311)
T ss_pred -----------CCC---CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------------ccceEhhhe
Confidence 111 3356889999999999999999999999998652210 000000112
Q ss_pred cCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCc-eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecc
Q 001190 826 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1128)
Q Consensus 826 ~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~ 903 (1128)
. .|...+..+.+|||+++||+++ |.+++||+.++. +....+.+|...+...+||. |++||++|+.|+.+++|++.
T Consensus 212 ~--ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 212 Q--AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred e--cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccc
Confidence 2 3889999999999999999998 899999999998 66778889999999999999 99999999999999999999
Q ss_pred cceeeecccccccCeeEEEEc
Q 001190 904 VDEVKSKLKGHQKRITGLAFS 924 (1128)
Q Consensus 904 ~~~~~~~l~~h~~~V~~l~~s 924 (1128)
.++.++...+|..+-.|++..
T Consensus 289 ~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 289 AGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCceeeecCCcccccEEEEee
Confidence 999999999999988888764
No 33
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-35 Score=278.51 Aligned_cols=297 Identities=18% Similarity=0.237 Sum_probs=245.4
Q ss_pred CCCcccEEEEEEecCc-ceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEe
Q 001190 761 TDTSSKVVRLLYTNSA-VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 839 (1128)
.+|.+.|+.++..+.+ ..++.++.|.++.+|++...+ ...|.... .+.| |...|..++.
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd-----------------~~~G~~~r-~~~G--HsH~v~dv~~ 71 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD-----------------IKYGVPVR-RLTG--HSHFVSDVVL 71 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc-----------------cccCceee-eeec--cceEecceEE
Confidence 3499999999999874 567788889999999987542 22333222 3455 9999999999
Q ss_pred ccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccc-cccC
Q 001190 840 SKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG-HQKR 917 (1128)
Q Consensus 840 s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~ 917 (1128)
++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|+...........+ |++-
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW 150 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence 99999999998 99999999999999999999999999999999 899999999999999999876544433332 3788
Q ss_pred eeEEEEcCC--CCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCc
Q 001190 918 ITGLAFSTS--LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKM 994 (1128)
Q Consensus 918 V~~l~~s~d--~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~ 994 (1128)
|.++.|+|+ ..+++++|.|++|++||+.+-+....+. +|. ..++.+++||||.++++|. ||.+.+||++.+
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-----gh~-~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-----GHS-GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-----ccc-ccEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 999999998 6799999999999999999966544433 333 7899999999999999975 999999999999
Q ss_pred ccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCC
Q 001190 995 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1074 (1128)
Q Consensus 995 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1074 (1128)
+.+..+.. ...|.+++|+|+--+|+.+ .+..|+|||++++..+..+.+..-.+.. .......+.++|++ ||
T Consensus 225 k~lysl~a----~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~---~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 225 KNLYSLEA----FDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSS---KAGDPICLSLAWSA-DG 295 (315)
T ss_pred ceeEeccC----CCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccccc---ccCCcEEEEEEEcC-CC
Confidence 99777765 7899999999987766655 5667999999999998877743222211 13345678999999 79
Q ss_pred CEEEEEECCCcEEEEcCCC
Q 001190 1075 NQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1075 ~~l~s~~~dg~i~iWd~~~ 1093 (1128)
..|++|..|+.|++|.+..
T Consensus 296 ~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cEEEeeecCCcEEEEEeec
Confidence 9999999999999998753
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=291.92 Aligned_cols=291 Identities=20% Similarity=0.326 Sum_probs=264.4
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.......+|...|+.+-|+|+-. ++++++.|++|++||..+|+.... ++||+..|..++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~ 158 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF 158 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence 44445567999999999999987 889999999999999999998654 9999999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
+..|++||+++.|-.+++||.++- .+....+.+|...|.+++|-|.|. +++|++.|.+|+.|+ .+|.++.++.+|
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence 999999999999999999999873 233336789999999999999998 899999999999999 999999999999
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCC---------------CeEEEeee
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG---------------SRLFSCGT 558 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g---------------~~l~~~~~ 558 (1128)
...|..+..+ .||.++++++.|.++++|-+.++.+...+..|.++|.+++|.|.. .++.+++
T Consensus 235 ~ewvr~v~v~--~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S- 311 (406)
T KOG0295|consen 235 SEWVRMVRVN--QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS- 311 (406)
T ss_pred hHhEEEEEec--CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-
Confidence 9999999974 488999999999999999999999999999999999999986642 3566665
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
.|++|++||+.++.++.++.+|.+ -|..++|+|.|+||+++.+|+++++||++++++...+..+.+ -++++.|+
T Consensus 312 ---rDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh 385 (406)
T KOG0295|consen 312 ---RDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFH 385 (406)
T ss_pred ---ccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecC
Confidence 599999999999999999999998 899999999999999999999999999999999999997776 68999999
Q ss_pred CCCCEEEEEEcCCcEEEEEc
Q 001190 639 KEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~ 658 (1128)
.+..++++|+-|.++++|..
T Consensus 386 ~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCceEEeccccceeeeeec
Confidence 99999999999999999964
No 35
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.7e-35 Score=295.92 Aligned_cols=283 Identities=22% Similarity=0.325 Sum_probs=248.9
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-+..|..|.|.|+|++ |++|+..|.+.+|+..+ .+|+ .++..|+.+|+++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCCCEEE
Confidence 4457999999999995 68999999999999632 2222 23778999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeeccc-ccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
+|+.+|.|++|+.+-.. ++ .+.+| ...|++++|+|... .+++|++||+|+||| ...+....+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999987643 22 24444 58999999999888 899999999999999 8888888999999999999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
.|+|.. ..|++++.|..|++||.+++.+..++..|...|..+.|++++++|++++. |..++++|+++.+.++++
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence 999965 59999999999999999999999999999999999999999999999984 899999999999999999
Q ss_pred ccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 581 AGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
++|.+ .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+. ..|...|.+++|+|=|.+|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998 89999999965 566778999999999998666666554 3566689999999999999999999999999754
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=278.22 Aligned_cols=329 Identities=15% Similarity=0.201 Sum_probs=277.3
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.|..|++.|.+++.+|+.+++|+|+.|..-.+|++.+|+... .+.+|+..|+++.|+.||. +||||+-+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 377899999999999999999999999999999999998554 5889999999999999999 89999999999999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
+ .+|.....+...-..|.-+.||| -+.+|+.|+.||.+.+|.+........+.+|..++++=.|.|||++++++..
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~- 210 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD- 210 (399)
T ss_pred EcccCceEEEeecccCceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-
Confidence 9 88888888876677788899998 4579999999999999999998888899999999999999999999999984
Q ss_pred cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC------CCC---C
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE------GGL---P 630 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~------~~~---~ 630 (1128)
+++|++|+..+++++..+....+....++.++..+..++.|+.++.+++-+..+|+.+...... ++. .
T Consensus 211 ---dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 211 ---DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred ---CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 9999999999999999998777767888999999999999999999999999999887766521 111 1
Q ss_pred CcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCC
Q 001190 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 710 (1128)
.|.++.++..-++.|+|+-||+|.|||+.... +
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~--------------------------------------------- 320 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAAST--L--------------------------------------------- 320 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccch--h---------------------------------------------
Confidence 22333333444556666666666666653320 0
Q ss_pred CcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEe
Q 001190 711 PSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 790 (1128)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l 790 (1128)
T Consensus 321 -------------------------------------------------------------------------------- 320 (399)
T KOG0296|consen 321 -------------------------------------------------------------------------------- 320 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEee
Q 001190 791 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFM 869 (1128)
Q Consensus 791 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~ 869 (1128)
. ... .|...|..+.|-+ ..+|++++ +|.|+.||.++|+++.++.
T Consensus 321 ------------------------------R--~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 321 ------------------------------R--HIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT 365 (399)
T ss_pred ------------------------------h--eec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe
Confidence 0 000 1777788888888 55666665 9999999999999999999
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecc
Q 001190 870 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1128)
Q Consensus 870 ~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~ 903 (1128)
+|...|.+++++| +.+++++++.|++.+||+..
T Consensus 366 GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 366 GHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 9999999999999 99999999999999999864
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=278.36 Aligned_cols=338 Identities=17% Similarity=0.254 Sum_probs=285.7
Q ss_pred eecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEe
Q 001190 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1128)
Q Consensus 446 ~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 524 (1128)
+|..|++.|.+++.+|+.. +++||+.|....+|+ .+|.....+.+|...|+++.|+. +|.+|+||+.+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence 5889999999999999777 899999999999999 89999999999999999999976 779999999999999999
Q ss_pred cCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE
Q 001190 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1128)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 604 (1128)
..++.....+......+.=+.|.|.+..|++++. |+.+.+|.+.++...+.+.||.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999998877788999999999999999884 99999999999999999999887 899999999999999999
Q ss_pred CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeee
Q 001190 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1128)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 684 (1128)
.||+|++||..+++++..+....+ ....++.++..+..+..|+.++.+++-+..+++... ..
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~-~~---------------- 271 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN-CN---------------- 271 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEE-ec----------------
Confidence 999999999999999998875443 356889999999999999999988887655441100 00
Q ss_pred eecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCc
Q 001190 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTS 764 (1128)
Q Consensus 685 ~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 764 (1128)
+
T Consensus 272 ---n---------------------------------------------------------------------------- 272 (399)
T KOG0296|consen 272 ---N---------------------------------------------------------------------------- 272 (399)
T ss_pred ---C----------------------------------------------------------------------------
Confidence 0
Q ss_pred ccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCC
Q 001190 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 844 (1128)
+.+..+.. +.+ .....|..+.++..-.
T Consensus 273 ---------~~~~~l~~-~~e-------------------------------------------~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 273 ---------GTVPELKP-SQE-------------------------------------------ELDESVESIPSSSKLP 299 (399)
T ss_pred ---------CCCccccc-cch-------------------------------------------hhhhhhhhcccccccc
Confidence 00000000 000 0122344455555667
Q ss_pred eEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEE
Q 001190 845 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 923 (1128)
Q Consensus 845 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 923 (1128)
+.|+|+ ||+|.|||+...++...+. |...|+.+.|.+ ..+|++++.||.|+.||.++|+++.++.||..+|.++++
T Consensus 300 L~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l 376 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL 376 (399)
T ss_pred hhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEE
Confidence 788888 9999999998877766665 888899999986 468899999999999999999999999999999999999
Q ss_pred cCCCCEEEEEcCCCcEEEEECC
Q 001190 924 STSLNILVSSGADAQLCVWSID 945 (1128)
Q Consensus 924 s~d~~~l~s~~~Dg~i~iwd~~ 945 (1128)
+|++++++|+|.|++.+|+++.
T Consensus 377 s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 377 SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999864
No 38
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.9e-34 Score=288.59 Aligned_cols=280 Identities=20% Similarity=0.290 Sum_probs=253.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
.+..|++++|+.+|. +||+|+.||.++||+.. |.++.. +..|.++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~-G~l~~t-------------------l~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKD-GNLIST-------------------LGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecC-chhhhh-------------------hhccCCceEEEEEcCCCCEEE
Confidence 346799999999999 89999999999999975 444432 778999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~ 501 (1128)
+++.|+++.+||..+|+... .+.-|..+-.++.|-.+.. +++++.|+.|+|+. ....++.++.||.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987665 3667888888999988776 89999999999999 77788999999999999999
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCC---------eEEEeeeccCCCceEEEEeCC
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS---------RLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~---------~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
|.+ .+.+|++++.|+++++|..........+..|...|..+.|+|+|. .+++++. +++|++||+.
T Consensus 367 ~n~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNP--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECC--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 966 568999999999999999988888889999999999999999764 6777774 9999999999
Q ss_pred CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCc
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~ 652 (1128)
.+.++.+|..|.. +|..++|+|+|.++++|+.||.|.+|+..+++.++.....+ .|..++|+.+|..|..+..|+.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999987 89999999999999999999999999999999999987544 4899999999999999999999
Q ss_pred EEEEEcc
Q 001190 653 FKILANA 659 (1128)
Q Consensus 653 i~iw~~~ 659 (1128)
+.+.|++
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998874
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.1e-34 Score=273.17 Aligned_cols=288 Identities=17% Similarity=0.236 Sum_probs=248.0
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
.+...+|++.|..+.|+|+|. ++|+|+.|..|.+|++..... ..-.+++|.+.|..+.|.+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdce------------------N~~~lkgHsgAVM~l~~~~ 100 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCE------------------NFWVLKGHSGAVMELHGMR 100 (338)
T ss_pred hhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEecccccc------------------ceeeeccccceeEeeeecc
Confidence 444567999999999999999 889999999999999754321 1123889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~ 495 (1128)
|+..|++++.|++|+.||+++|++.+ .+.+|..-|+++.-+.-|.. ++.|++.|+++++|| .+...++++. ...
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky 175 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKY 175 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cce
Confidence 99999999999999999999999887 47799999999996666766 789999999999999 6666666664 455
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC--
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-- 573 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-- 573 (1128)
.++++.|.. .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++++.+. |.++++||++.
T Consensus 176 qltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 176 QLTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFA 249 (338)
T ss_pred eEEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccC
Confidence 689999854 5578999999999999999999999999999999999999999999999986 99999999874
Q ss_pred --CceeeEeccccCC---ceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001190 574 --GTIKRTYAGFRKK---SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1128)
Q Consensus 574 --~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 648 (1128)
.+++..+.++.-. ....++|+|++..+-+|+.|..+++||......+..++++ ...|++++|+|...+|.+++
T Consensus 250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh--~gsvn~~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH--YGSVNEVDFHPTEPIILSCS 327 (338)
T ss_pred CCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc--ceeEEEeeecCCCcEEEEec
Confidence 3457778776431 2445789999999999999999999999888888888754 55899999999999999999
Q ss_pred cCCcEEEE
Q 001190 649 ADNGFKIL 656 (1128)
Q Consensus 649 ~dg~i~iw 656 (1128)
.|.+|++=
T Consensus 328 sdk~i~lg 335 (338)
T KOG0265|consen 328 SDKTIYLG 335 (338)
T ss_pred cCceeEee
Confidence 99998763
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.1e-34 Score=280.00 Aligned_cols=292 Identities=17% Similarity=0.272 Sum_probs=259.2
Q ss_pred cceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 335 RTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 335 ~~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
-.+.+.+ +|.++|.|+++.|-+. ++++|+.|++|+|||+.+|++..+ +.||-..|..++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~va 200 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGVA 200 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeeee
Confidence 3344444 4999999999999987 889999999999999999998754 899999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecC
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~ 492 (1128)
+|+--.||++++.|+.|+-||++..+.++ .+.||-..|++++..|.-. +|++|+.|.+++||| .+...+..+.|
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecC
Confidence 99999999999999999999999988877 4779999999999999888 899999999999999 88899999999
Q ss_pred CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC
Q 001190 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
|..+|.++.+.+. ...+++|+.|++|++||+..++....+..|...+.+++..|....+++++ ...|+-|++.
T Consensus 276 H~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~p 348 (460)
T KOG0285|consen 276 HTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKLP 348 (460)
T ss_pred CCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccCC
Confidence 9999999998654 35799999999999999999999999999999999999999999999987 4469999999
Q ss_pred CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe---cCC---CCCCcceEEEcCCCCEEEE
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD---AEG---GLPNLPRLRFSKEGNLLAV 646 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~sp~~~~l~~ 646 (1128)
.|..++.+.+|.. .+.+++...| .++++|+++|.+.+||.++|...+... ..+ ....|.+.+|...|..|++
T Consensus 349 ~g~f~~nlsgh~~-iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit 426 (460)
T KOG0285|consen 349 EGEFLQNLSGHNA-IINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT 426 (460)
T ss_pred ccchhhccccccc-eeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe
Confidence 9999999999887 8888888876 488999999999999999986655432 222 2335789999999999999
Q ss_pred EEcCCcEEEEEccc
Q 001190 647 TTADNGFKILANAI 660 (1128)
Q Consensus 647 ~~~dg~i~iw~~~~ 660 (1128)
|..|.+|++|.-..
T Consensus 427 ~eadKtIk~~keDe 440 (460)
T KOG0285|consen 427 GEADKTIKMYKEDE 440 (460)
T ss_pred ccCCcceEEEeccc
Confidence 99999999997554
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-34 Score=263.46 Aligned_cols=289 Identities=17% Similarity=0.239 Sum_probs=248.2
Q ss_pred CCcceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE
Q 001190 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
+|......+. |.++|.++.|+-||+ +..+++.|.+|++||...|.++++ +.||...|..
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD 64 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLD 64 (307)
T ss_pred CcchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeee
Confidence 3444444454 899999999999999 566677899999999999998865 8899999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe---cCCCeEE
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRKLF 488 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd---~~g~~~~ 488 (1128)
++.+.|+..+++|+.|+.|.+||+++|+.++ .+.+|.+.|+.+.|..+.. .+++|+.|.++++|| .+-++++
T Consensus 65 ~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 65 AALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccc
Confidence 9999999999999999999999999999887 5889999999999999998 899999999999999 4567889
Q ss_pred EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
.+....+.|.++.+ .+..|++|+.||++|.||++.+.... ..-+++|++++|++||+..++++. ++.+++
T Consensus 140 ildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l----~stlrL 209 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSL----DSTLRL 209 (307)
T ss_pred hhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeec----cceeee
Confidence 99888899999987 34679999999999999998765543 345678999999999999998885 899999
Q ss_pred EeCCCCceeeEeccccCCce-eEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001190 569 WNESEGTIKRTYAGFRKKSN-GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 647 (1128)
.|-.+|+++..+++|.+... ..+++.....++++|++||.|++||+.....+..+..++. ..|.+++++|.-..++++
T Consensus 210 lDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 210 LDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITA 288 (307)
T ss_pred cccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEe
Confidence 99999999999999987433 2367777788999999999999999999999988877654 247899999987777777
Q ss_pred EcCCcEEEEEc
Q 001190 648 TADNGFKILAN 658 (1128)
Q Consensus 648 ~~dg~i~iw~~ 658 (1128)
.. +.+..|.-
T Consensus 289 ~~-~~~~~~~~ 298 (307)
T KOG0316|consen 289 TG-HGDLFWYQ 298 (307)
T ss_pred cC-Cceeceee
Confidence 64 44556643
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.1e-33 Score=263.20 Aligned_cols=286 Identities=19% Similarity=0.329 Sum_probs=235.1
Q ss_pred ecCCCcEEEEEEeCC-CCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001190 341 LHQGSTVISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1128)
Q Consensus 341 ~~h~~~V~~v~fspd-g~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1128)
-+|.+.|+.++|+|- |. +||+|+.|+.|+||+...+..... ...+-.+|+..|+++||+|.|+
T Consensus 11 ~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~g~ 74 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPHGR 74 (312)
T ss_pred cCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCCCc
Confidence 359999999999999 87 899999999999999875433221 1123457999999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC---CeEEEecCCCC
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFEGHEA 495 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g---~~~~~~~~h~~ 495 (1128)
+||+|+.|.++.||.-..++ .....++.||...|.+++|+++|. +||+|+.|+.|-||. ..+ .++..+.+|..
T Consensus 75 ~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred EEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence 99999999999999877654 344557999999999999999999 899999999999999 433 45688999999
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCC---CCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~---~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
.|..+.|||.. .+|++++.|++|++|+-.. -.+..++.+|...|.+++|++.|..|++++ .|++++||-..
T Consensus 152 DVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s----dD~tv~Iw~~~ 225 (312)
T KOG0645|consen 152 DVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS----DDGTVSIWRLY 225 (312)
T ss_pred cccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec----CCcceEeeeec
Confidence 99999999976 5999999999999997653 234668888888999999999999999998 59999999755
Q ss_pred CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe------eeEEEecCCCCCCcceEEEcCC-CCEEE
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN------ILTSTDAEGGLPNLPRLRFSKE-GNLLA 645 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~sp~-~~~l~ 645 (1128)
..+.+.+...+..+.|. ...|++++.|+.|++|.-...- .+.. ....|...|++++|+|. .++|+
T Consensus 226 -----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 226 -----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVSNRLA 297 (312)
T ss_pred -----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCCCcee
Confidence 33444454578888888 5689999999999999866421 1111 12234458999999994 78999
Q ss_pred EEEcCCcEEEEEcc
Q 001190 646 VTTADNGFKILANA 659 (1128)
Q Consensus 646 ~~~~dg~i~iw~~~ 659 (1128)
++++||.|++|.+.
T Consensus 298 s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 SGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCceEEEEEec
Confidence 99999999999864
No 43
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=9.5e-32 Score=282.13 Aligned_cols=640 Identities=16% Similarity=0.206 Sum_probs=360.0
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
-+.-.|.+.|+.+.|||-...|||+||.|..|+||.+..|-... +......+.+..-.|-|+.|+|.
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHpT 139 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHPT 139 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecccC
Confidence 33345999999999999877799999999999999997543221 11122335555668999999997
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCCC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEA 495 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~ 495 (1128)
..-|+..+..|+++|||+.+++.+. .+.+|...|.+..|+.||+ +|++.+.|+.|+||| ..++.++...+|.+
T Consensus 140 aDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~ 214 (1012)
T KOG1445|consen 140 ADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGG 214 (1012)
T ss_pred cCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccccc
Confidence 7777777788999999999988665 5889999999999999999 899999999999999 78899999999986
Q ss_pred C-eEEEeccCCCCccEEEEEecc----CcEEEEecCCCCcee-eecCC-CCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 496 P-VYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRV-DYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 496 ~-v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~-~~~~~-~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
. -..+.|.. +-..|++.+.+ ..|++||.+...... ++... ...|.---|.||.++++.++. ++..+..
T Consensus 215 ~rdsRv~w~G--n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l~~ 289 (1012)
T KOG1445|consen 215 MRDSRVLWAG--NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKLFM 289 (1012)
T ss_pred chhheeeecc--chhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceEEE
Confidence 3 23345533 43466666654 578999987654332 22222 124566678999999988875 7888888
Q ss_pred EeCCCCceee--EeccccCCceeEEEEeCCCCEEEEEEC-CC--------------------------------------
Q 001190 569 WNESEGTIKR--TYAGFRKKSNGVVQFDTTQNHFLAVGE-DS-------------------------------------- 607 (1128)
Q Consensus 569 wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg-------------------------------------- 607 (1128)
+.+...+... .++..-.......++-|....-+..++ +.
T Consensus 290 lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~ 369 (1012)
T KOG1445|consen 290 LEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPG 369 (1012)
T ss_pred EEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccC
Confidence 8876544211 111000000011111111000000000 00
Q ss_pred -cEEEEECCCCeeeEEEec------CCC----------------CCCcceEEEcCCCC-EEEEEEc-------------C
Q 001190 608 -QIKFWDMDNVNILTSTDA------EGG----------------LPNLPRLRFSKEGN-LLAVTTA-------------D 650 (1128)
Q Consensus 608 -~i~iwd~~~~~~~~~~~~------~~~----------------~~~v~~v~~sp~~~-~l~~~~~-------------d 650 (1128)
.---|=-.+.+.+..... |+. ...|......|... ..-..+. .
T Consensus 370 ~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~ 449 (1012)
T KOG1445|consen 370 CTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK 449 (1012)
T ss_pred cCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc
Confidence 000011011111111100 000 00000000001000 0000000 0
Q ss_pred CcEEEEEcccCccccccccCC----ccccccCcceeeeeecccccccccCC-CCcceecccCCCCC-------cccccCC
Q 001190 651 NGFKILANAIGLRSLRAVENP----PFEALRTPIESVALKVSASSAVSSGT-PANCKVERSSPVRP-------SPIINGV 718 (1128)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~-------~~~~~~~ 718 (1128)
..++-.+.+..+.......+. ......+++..+ +|....++--.+ +-...+..-..+.+ .+.-.+.
T Consensus 450 ~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~ 527 (1012)
T KOG1445|consen 450 EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNF 527 (1012)
T ss_pred hhhhhhcccccccccCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccccCccccccCCCCCCccc
Confidence 000000000000000000000 000000111100 010000000000 00000000000000 0000000
Q ss_pred CCCCCCCCCCcccCCC------CCCCCcceeEEEeeCCceeEEEecCCCCCcc----cEE---------EEEEecCcceE
Q 001190 719 DPTSRSMDKPRTVDDV------TDKPKPWQLAEIVDSGQCRLVTMPESTDTSS----KVV---------RLLYTNSAVGL 779 (1128)
Q Consensus 719 ~~~~~~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~----~i~---------~l~~s~~g~~l 779 (1128)
....+.......+.+. -|.+.-|.- +.+..+|.+ ... +--|+.+..++
T Consensus 528 g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH-------------~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rv 594 (1012)
T KOG1445|consen 528 GKPISATNRVPLSQSVRPKSCVVGQISKFRH-------------VDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRV 594 (1012)
T ss_pred CCCccccccccccccccccceeeccchheee-------------ccCccccchhhhhhhhcccccCCCccCceeeccceE
Confidence 0000000000000000 011111110 111111111 111 11123334444
Q ss_pred E--EeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc-CCCeEEEEe-CCeEE
Q 001190 780 L--ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGKIS 855 (1128)
Q Consensus 780 ~--~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~-dg~i~ 855 (1128)
+ ..+..|.|-||++......|+|.. .++.....|+.+.|.| |...||++. ||.|+
T Consensus 595 AVPL~g~gG~iai~el~~PGrLPDgv~---------------------p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~ 653 (1012)
T KOG1445|consen 595 AVPLAGSGGVIAIYELNEPGRLPDGVM---------------------PGLFNGTLVTDLHWDPFDDERLAVATDDGQIN 653 (1012)
T ss_pred EEEecCCCceEEEEEcCCCCCCCcccc---------------------cccccCceeeecccCCCChHHeeecccCceEE
Confidence 4 345578999998876554444432 2223567799999999 778888887 89999
Q ss_pred EEECCCc-------eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCC
Q 001190 856 LFNMMTF-------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 856 vwd~~~~-------~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 928 (1128)
+|.+..+ .....+..|...|+++.|+|-...+|++++.|-+|++||+.+++....+.+|++.|.+++|||||+
T Consensus 654 lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr 733 (1012)
T KOG1445|consen 654 LWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR 733 (1012)
T ss_pred EEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCc
Confidence 9998754 345667889999999999997778999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-----ecCeEEEEecCCcc--cccccc
Q 001190 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-----HETQLAIYDASKME--RIRQWT 1001 (1128)
Q Consensus 929 ~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-----~d~~i~v~d~~~~~--~~~~~~ 1001 (1128)
.+|+.+.||+|++|+-.+++. ++....+........+.|.-||+++++. ++.+|.+||..+.. .+....
T Consensus 734 ~~AtVcKDg~~rVy~Prs~e~----pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~ 809 (1012)
T KOG1445|consen 734 RIATVCKDGTLRVYEPRSREQ----PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV 809 (1012)
T ss_pred ceeeeecCceEEEeCCCCCCC----ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee
Confidence 999999999999999988764 2232333333566789999999999874 36779999987544 222221
Q ss_pred cCCCCCCCeEEEEEeeCCC-EEEEEecCCcEEEEecCCCceE
Q 001190 1002 PQDALSAPISCAVYSCNSQ-LVFATFCDGNIGVFDADTLRLR 1042 (1128)
Q Consensus 1002 ~~~~h~~~v~~l~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~ 1042 (1128)
..- ...+.--.|.+|.. ++++|-.|..|++|.+-.-+..
T Consensus 810 lDv--aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 810 LDV--APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred ecc--cCccccccccCCCceEEEecCCCceEEEEEecCCCce
Confidence 111 22223334566665 4557889999999998665543
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.7e-33 Score=315.09 Aligned_cols=284 Identities=22% Similarity=0.375 Sum_probs=250.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCc--eecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
|...|.|+.|||+|+ ++++++.|+.|++|+..+++ .+. .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 588999999999999 58999999999999997666 322 26889999999999999999
Q ss_pred EEEEeCCCeEEEEEc-cCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeE
Q 001190 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 421 las~~~d~~i~vwd~-~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~ 498 (1128)
+++|+.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+||| .+|+++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 6889999999999999997 899999999999999 88999999999999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCC--ceeeecCCCC--eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
+++|.+ ++.+|++++.||.|++||+.++. ....+..+.. +++++.|+|++.++++++. ++.+++||+..+
T Consensus 293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 999966 77899999999999999999888 3344444444 5999999999999999984 889999999999
Q ss_pred ceeeEeccccCC--ceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEE--cC
Q 001190 575 TIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--AD 650 (1128)
Q Consensus 575 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--~d 650 (1128)
..+..+.+|... .+.....++.+.++++|+.|+.|++||..++..+..+..+. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999885 23334557789999999999999999999999998888774 55789999999999999998 68
Q ss_pred CcEEEEEc
Q 001190 651 NGFKILAN 658 (1128)
Q Consensus 651 g~i~iw~~ 658 (1128)
+.+++|..
T Consensus 446 ~~~~~w~~ 453 (456)
T KOG0266|consen 446 GLIRLWKY 453 (456)
T ss_pred ceEEEecC
Confidence 89999965
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.7e-34 Score=280.47 Aligned_cols=274 Identities=20% Similarity=0.287 Sum_probs=235.4
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
....|.|+.+..+ .+++|..|++|+|||.++-.++. .+.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence 4568999999743 46999999999999998877664 39999999999999 466999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC---eEEEecCCCCCeE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPVY 498 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~---~~~~~~~h~~~v~ 498 (1128)
+|+.|.+|+|||+++|+++. ++.+|...|..+.|+.. +++|++.|.++.+|| .+.. +.+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 57799999999999843 799999999999999 4333 2367789999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceee
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1128)
.+.| +.+++++++.|.+|++|++.+.....++.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 9998 4479999999999999999999999999999999988876 5778888875 9999999999999999
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeee-------EEEecCCCCCCcceEEEcCCCCEEEEEEcCC
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL-------TSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~-------~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 651 (1128)
.++||.. -|.++.|. .+.+++|+.||+|+|||+..+... .......+.+.|..+.| |...+++++.|.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 9999998 89999995 579999999999999999876532 11222344557889998 667899999999
Q ss_pred cEEEEEcccCc
Q 001190 652 GFKILANAIGL 662 (1128)
Q Consensus 652 ~i~iw~~~~~~ 662 (1128)
+|.|||+.++.
T Consensus 470 tILiWdFl~~~ 480 (499)
T KOG0281|consen 470 TILIWDFLNGP 480 (499)
T ss_pred eEEEEEcCCCC
Confidence 99999998773
No 46
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.2e-30 Score=267.72 Aligned_cols=525 Identities=13% Similarity=0.154 Sum_probs=377.4
Q ss_pred EEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccC--------cEEEEecCCC
Q 001190 457 LAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG--------KIKAWLYDTM 528 (1128)
Q Consensus 457 l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg--------~i~~wd~~~~ 528 (1128)
+-+.|.|..++++. ..+.+++...+..+-+.||...|.|++++|+. -.+++|-.-| .+++||..+.
T Consensus 71 ly~lptgE~vyfvA----~V~Vl~n~ee~~Qr~y~GH~ddikc~~vHPdr--i~vatGQ~ag~~g~~~~phvriWdsv~L 144 (626)
T KOG2106|consen 71 LYLLPTGELVYFVA----AVGVLYNWEERSQRHYLGHNDDIKCMAVHPDR--IRVATGQGAGTSGRPLQPHVRIWDSVTL 144 (626)
T ss_pred eEEccCccEEEEec----cEEEEEeehhhhcccccCCCCceEEEeecCCc--eeeccCcccccCCCcCCCeeeecccccc
Confidence 55667776322222 24455563344456678999999999999843 4555554333 5899997777
Q ss_pred CceeeecCCCCeEEEEEEcCC--CCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC
Q 001190 529 GSRVDYDAPGHWCTTMLYSAD--GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1128)
Q Consensus 529 ~~~~~~~~~~~~i~~~~~s~~--g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 606 (1128)
.....+......|.+++||+- |..+... +...+..+.+||-..+......+.... .+..+.|+|.+..+++....
T Consensus 145 ~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v--D~s~~h~lSVWdWqk~~~~~~vk~sne-~v~~a~FHPtd~nliit~Gk 221 (626)
T KOG2106|consen 145 STLHVIGFFDRGVTCVAFSKINGGSLLCAV--DDSNPHMLSVWDWQKKAKLGPVKTSNE-VVFLATFHPTDPNLIITCGK 221 (626)
T ss_pred eeeeeeccccccceeeeecccCCCceEEEe--cCCCccccchhhchhhhccCcceeccc-eEEEEEeccCCCcEEEEeCC
Confidence 777777766778999999984 3344433 334577889999988877776666554 78889999988888887788
Q ss_pred CcEEEEECCCCeeeEEE---ecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceee
Q 001190 607 SQIKFWDMDNVNILTST---DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1128)
Q Consensus 607 g~i~iwd~~~~~~~~~~---~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~ 683 (1128)
|.+++|+++.+.+.+.. ..+.. ..|.|++|.++|. +++|..+|.|.||+..+. +..++.. ++.+.|.++
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~-~~~k~~~-----aH~ggv~~L 293 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLENGD-VITGDSGGNILIWSKGTN-RISKQVH-----AHDGGVFSL 293 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCCCC-EEeecCCceEEEEeCCCc-eEEeEee-----ecCCceEEE
Confidence 99999999998776654 33333 5799999999985 679999999999998665 2222222 455667788
Q ss_pred eeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCC
Q 001190 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (1128)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (1128)
....+|.++ +|+.|+.|..||-. ....+.+.+|+ .
T Consensus 294 ~~lr~Gtll--------------------------------------SGgKDRki~~Wd~~----y~k~r~~elPe---~ 328 (626)
T KOG2106|consen 294 CMLRDGTLL--------------------------------------SGGKDRKIILWDDN----YRKLRETELPE---Q 328 (626)
T ss_pred EEecCccEe--------------------------------------ecCccceEEecccc----ccccccccCch---h
Confidence 887777655 68888999999932 45556666766 6
Q ss_pred cccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCC
Q 001190 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 843 (1128)
.+.|+.++-...+ ++.|...+.|..=.+ +++..+. .. .|.+....++..|+.
T Consensus 329 ~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~----------------------~~~f~~~--v~--gh~delwgla~hps~ 380 (626)
T KOG2106|consen 329 FGPIRTVAEGKGD--ILVGTTRNFILQGTL----------------------ENGFTLT--VQ--GHGDELWGLATHPSK 380 (626)
T ss_pred cCCeeEEecCCCc--EEEeeccceEEEeee----------------------cCCceEE--EE--ecccceeeEEcCCCh
Confidence 6667766544333 666655544443222 1222111 11 288889999999999
Q ss_pred CeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEE
Q 001190 844 SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLA 922 (1128)
Q Consensus 844 ~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 922 (1128)
..+++++ |+.+++|+ ..++..+.. -..++.|+.|+| .| .+|.|+..|...+.|.++...+..-.. ..+++++.
T Consensus 381 ~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ 454 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVR 454 (626)
T ss_pred hheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEE
Confidence 9999988 99999999 444444433 356789999999 67 999999999999999999776655554 88999999
Q ss_pred EcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccccc-
Q 001190 923 FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQW- 1000 (1128)
Q Consensus 923 ~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~- 1000 (1128)
|+|+|.+||.|+.|+.|.||.++.....-.... .....+++.+.||+|++++.+.+ |-.|..|....-+.+...
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~----k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~k 530 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG----KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVK 530 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECCCCcEEEEee----eecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceec
Confidence 999999999999999999999987553322221 12227899999999999999965 888999944332222210
Q ss_pred --------------ccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEE
Q 001190 1001 --------------TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1066 (1128)
Q Consensus 1001 --------------~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1128)
...-+|...|..++-+.+.+++|+|.+.|.|++|...--......... .+|...+.+
T Consensus 531 DvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~---------~ghs~~vt~ 601 (626)
T KOG2106|consen 531 DVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEY---------GGHSSHVTN 601 (626)
T ss_pred ceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceee---------ccccceeEE
Confidence 111235777888888999999999999999999998765544433311 256677899
Q ss_pred EEEecCCCCEEEEEECCCcEEEEcC
Q 001190 1067 VAAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1067 ~~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
++|.-. ..++++.+.|.+|..|++
T Consensus 602 V~Fl~~-d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 602 VAFLCK-DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEEeeC-CceEEecCCCceEEEEEe
Confidence 999985 455666669999999986
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.2e-33 Score=271.59 Aligned_cols=246 Identities=17% Similarity=0.289 Sum_probs=226.8
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
+++.||.+.|.|+++.|-+.++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. ++++++.|+.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEE
Confidence 4589999999999999999999999999999999999998655 6889999999999999888 8999999999999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
|| ...+.++.+.||-..|.|++.+|.- ..|++|+.|.++|+||+++......+.+|..+|.++.+.|-.-.+++++.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99 8899999999999999999999865 68999999999999999999999999999999999999998888999985
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
|++|++||+..|+...++..|.. .+.+++.+|....+++++.| .|+-|++..|..+..+..+ ...|++++.+
T Consensus 298 ----D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~n 369 (460)
T KOG0285|consen 298 ----DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVN 369 (460)
T ss_pred ----CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc--cceeeeeeec
Confidence 99999999999999999998887 89999999999888888877 6899999999998886654 4478999998
Q ss_pred CCCCEEEEEEcCCcEEEEEcccC
Q 001190 639 KEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.|+ ++++|++.|.+.+||..++
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcC
Confidence 886 7889999999999999887
No 48
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-29 Score=268.14 Aligned_cols=546 Identities=14% Similarity=0.142 Sum_probs=377.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCC-CcceEEEEEccCCCEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYV 421 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~l 421 (1128)
...+|.|+|||.+.+ .||.|-.||.|.||++..+-.. ..++.|+ +..|.+++|+ +|..|
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~------------------~~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFL------------------EPVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCcee------------------eEEEecCCCCceeeEEEc-cCCeE
Confidence 466899999999988 5799999999999999875432 2345555 5689999999 55677
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE--EEecCCCCCeE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--FNFEGHEAPVY 498 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~--~~~~~h~~~v~ 498 (1128)
.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+...+ ..++.. ..|....++|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 788899999999999988766 4667888999999999998 789999999887777 555444 33445568999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC--------CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEe
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--------~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd 570 (1128)
++.|++ ++..+++|+.||.|++||...+........ ...-|.++.|-.++ .|+++- ..|.|.+||
T Consensus 159 slsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD----S~G~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD----SAGTVTFWD 231 (691)
T ss_pred EEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec----CCceEEEEc
Confidence 999976 667899999999999999988877662221 22357888888666 455553 489999999
Q ss_pred CCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee--eEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001190 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1128)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 648 (1128)
...+.+++.+..|.. .|.+++..+++++++++|.|+.|.-|...+... +.......|...|.+++..++ .+++|+
T Consensus 232 ~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred ccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 999999999999987 899999999999999999999999998876633 222223334447899998877 899999
Q ss_pred cCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCC
Q 001190 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKP 728 (1128)
Q Consensus 649 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1128)
.|.++.+-........... .. ...|.+..+ .....++
T Consensus 309 ~d~~l~i~~s~~~~~~~h~-----~~---------~~~p~~~~v-----------------------------~~a~~~~ 345 (691)
T KOG2048|consen 309 RDFTLAICSSREFKNMDHR-----QK---------NLFPASDRV-----------------------------SVAPENR 345 (691)
T ss_pred eeeEEEEccccccCchhhh-----cc---------cccccccee-----------------------------ecCccce
Confidence 9999887544331111111 00 000111110 0011122
Q ss_pred cccCCCCCCCCcceeEEEeeC-----CceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCc
Q 001190 729 RTVDDVTDKPKPWQLAEIVDS-----GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (1128)
Q Consensus 729 l~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~ 803 (1128)
+..--.+..+.+|.+...... ..+..+.++ ....|.+.+.+|+|+.++.+.- ...++|.+.... .
T Consensus 346 L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k----~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~-----~ 415 (691)
T KOG2048|consen 346 LLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTK----EKENISCAAISPDGNLIAISTV-SRTKIYRLQPDP-----N 415 (691)
T ss_pred EEEEeccccccceeccCcccccccChhhheeeecC----CccceeeeccCCCCCEEEEeec-cceEEEEeccCc-----c
Confidence 222233355666665543211 122222222 4567999999999997665543 357777765321 0
Q ss_pred eeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCce--EEEEee--CCCCCeeE
Q 001190 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFK--VMTTFM--SPPPASTF 877 (1128)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~--~~~~~~--~~~~~v~~ 877 (1128)
.. +-... ... ...-....+.|+-|+..++.++ ...+.+++.++.. .+..+. +-...|..
T Consensus 416 vk------~~~v~-------~~~--~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~ 480 (691)
T KOG2048|consen 416 VK------VINVD-------DVP--LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISR 480 (691)
T ss_pred ee------EEEec-------cch--hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCccee
Confidence 00 00000 000 0233567788998988877776 4678888876543 333332 24557999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCCcccceeEEe
Q 001190 878 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIH 956 (1128)
Q Consensus 878 l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~-d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~ 956 (1128)
++.|+ +|+++|+.+..|.|.+|++++++.......-...|++++|+| +...|+.+..|+.+.-||++..+..+.....
T Consensus 481 l~~Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~n 559 (691)
T KOG2048|consen 481 LVVSS-DGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNN 559 (691)
T ss_pred EEEcC-CCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhcc
Confidence 99999 999999999999999999998876544434457899999995 5568888999999999999654433222221
Q ss_pred e-----cCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecC
Q 001190 957 I-----PAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDAS 992 (1128)
Q Consensus 957 ~-----~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~ 992 (1128)
. ........+..+.|+|.....+.. +.+.+.+.|..
T Consensus 560 t~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 560 TRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred ccccccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEecC
Confidence 1 111112678888898876655554 45666676654
No 49
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.9e-29 Score=266.15 Aligned_cols=548 Identities=13% Similarity=0.155 Sum_probs=384.4
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeeccc-ccceeEEEEecCCCeEEEEEecCCCeEEEEe-c
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~ 482 (1128)
-..+|+++|||.+.+.||.+-.+|.|.||++..+=.... ++.++ ...|.+++|++.+ .|+|.+.+|.|.-|| .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCC---eEEeecCCceEEEEecc
Confidence 456899999999999999999999999999998644333 45555 5689999999666 489999999999999 9
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee--ecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
+++++..+....+.|++++.++.. ..++.|+.||.+..++......... +....+.+.+++|+|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999998754 6899999999777776655544432 3345578999999999999999985
Q ss_pred CCCceEEEEeCCCCceeeEec-----cc--cCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcc
Q 001190 561 DGDSFLVEWNESEGTIKRTYA-----GF--RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~-----~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1128)
|+.|++||+.++..+.... .. ....|+++.|-.+ ..|++|...|.|.+||...+.+++....+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 9999999999988766221 11 2224666666644 5799999999999999999999998887654 799
Q ss_pred eEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcc
Q 001190 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1128)
Q Consensus 634 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~ 713 (1128)
+++.++++.++.+++.|+.|.-+...++...
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------------------------------------------- 280 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------------------------------------------- 280 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc-------------------------------------------------
Confidence 9999999999999999999988876654221
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeec
Q 001190 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1128)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 793 (1128)
|-... ....|...+.++++.++ .+++++.|..+.+-..
T Consensus 281 ---------------------------wv~~~-------------~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 281 ---------------------------WVINS-------------RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred ---------------------------eeeec-------------cccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 11100 00227778888888887 7889999988877533
Q ss_pred cccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCce---------E
Q 001190 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFK---------V 864 (1128)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~---------~ 864 (1128)
.... ..+ .. +...+ .... -+...+..++++.-....+.+|.+.+.- +
T Consensus 319 ~~~~--------------~~~---h~-~~~~~----p~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~L 374 (691)
T KOG2048|consen 319 REFK--------------NMD---HR-QKNLF----PASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHL 374 (691)
T ss_pred cccC--------------chh---hh-ccccc----cccc--eeecCccceEEEEeccccccceeccCcccccccChhhh
Confidence 2100 000 00 00000 1111 1233455555555557778888876541 1
Q ss_pred EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee-----cccccccCeeEEEEcCCCCEEEEEc-CCCc
Q 001190 865 MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-----KLKGHQKRITGLAFSTSLNILVSSG-ADAQ 938 (1128)
Q Consensus 865 ~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-----~l~~h~~~V~~l~~s~d~~~l~s~~-~Dg~ 938 (1128)
.+........|.|.+.|| +|+++|.+. =..++||.+...-.++ ....-.-....+.|+-|+..++.++ .+..
T Consensus 375 lkl~~k~~~nIs~~aiSP-dg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~ 452 (691)
T KOG2048|consen 375 LKLFTKEKENISCAAISP-DGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFS 452 (691)
T ss_pred eeeecCCccceeeeccCC-CCCEEEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccce
Confidence 222223455699999999 999998876 4567888876522221 2222334577889999988887777 6778
Q ss_pred EEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEee
Q 001190 939 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 1017 (1128)
Q Consensus 939 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~ 1017 (1128)
+.+.++.+............ .....++.++.|+||.|+++. ..+.|.+|++++++.-...... ...|+.++|+|
T Consensus 453 le~~el~~ps~kel~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl---n~~vTa~~~~~ 527 (691)
T KOG2048|consen 453 LEEFELETPSFKELKSIQSQ--AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL---NIDVTAAAFSP 527 (691)
T ss_pred eEEEEecCcchhhhhccccc--cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc---Ccceeeeeccc
Confidence 88888887654443333322 233789999999999999996 4899999999988765544232 67899999996
Q ss_pred -CCCEEEEEecCCcEEEEecCCCceEEEeCC-CC-CCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1018 -NSQLVFATFCDGNIGVFDADTLRLRCYIAP-ST-YLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1018 -dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
+-..|+.+..++.++-||++..+. .+... .+ .++.... .-...+..+.|+|.+...++.-+. +-+++.|.+
T Consensus 528 ~~~~~lvvats~nQv~efdi~~~~l-~~ws~~nt~nlpk~~~--~l~~~~~gisfd~~n~s~~~~~~a-~w~~~id~~ 601 (691)
T KOG2048|consen 528 FVRNRLVVATSNNQVFEFDIEARNL-TRWSKNNTRNLPKEPK--TLIPGIPGISFDPKNSSRFIVYDA-HWSCLIDFS 601 (691)
T ss_pred cccCcEEEEecCCeEEEEecchhhh-hhhhhccccccccChh--hcCCCCceEEeCCCCccEEEEEcC-cEEEEEecC
Confidence 555788888999999999954331 11110 00 1111100 111234678888865555554443 555666654
No 50
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-32 Score=270.62 Aligned_cols=247 Identities=21% Similarity=0.290 Sum_probs=228.4
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+.+|..+|+.+-|+|+-..+++++.|++|++||..+|+..+ .++||...|.+++|+..|+ ++++++.|-.+++|
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW 177 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence 378899999999999999999999999999999999999865 6899999999999999999 89999999999999
Q ss_pred e--cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 481 E--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 481 d--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
| ..-+++..+.+|...|.+++|.|. |.++++++.|.+|+.|+++++-+..++.+|..+|..+..+.||..+++++
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s- 254 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCS- 254 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecC-
Confidence 9 336788899999999999999885 47999999999999999999999999999999999999999999999998
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCC---------------CCEEEEEECCCcEEEEECCCCeeeEEE
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---------------QNHFLAVGEDSQIKFWDMDNVNILTST 623 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~~ 623 (1128)
.+.++++|-+.++++...++.|.- ++.+++|-|. +.++.+++.|++|++||+.++.++.++
T Consensus 255 ---~dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 255 ---NDQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred ---CCceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 499999999999999999999987 8889888653 248899999999999999999999999
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.+|. ..|..++|+|.|++|+++.+|+++++||+++.
T Consensus 331 ~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 331 VGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred eccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 8665 48999999999999999999999999999876
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.5e-32 Score=259.68 Aligned_cols=250 Identities=18% Similarity=0.302 Sum_probs=217.1
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.||++.|..+.|+|+|.+||+|+.|..|.+|++.... ..+.++.+|.++|..+.|.+|+. .+++++.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 4588999999999999999999999999999999976533 33446889999999999999999 8999999999999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
|| .+|+.++++++|..-|+++.... -+-.++.+++.||++++||++.......+. ....++++.|..++..+.+++-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 99 99999999999999999998543 244678889999999999999776665543 3457999999999999999986
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC----eeeEEEecCCCCC--Cc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLP--NL 632 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~--~v 632 (1128)
|+.|++||++.......+.||.+ .|..+..+++|.++.+-+.|.++++||++.. +++..+..+.+.- ..
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 88899999999999999999998 8999999999999999999999999998753 3466666554422 34
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
..++|+|++..+..|+.|..+++||...
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred ceeeccCCCCccccccccceEEEeeccc
Confidence 5678999999999999999999999754
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-32 Score=274.80 Aligned_cols=290 Identities=16% Similarity=0.260 Sum_probs=243.6
Q ss_pred CCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 761 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
..|.+.|.-+.||++|++|++++.|.+..+|.+.. |.. ..+...+.+ |..+|..+.||
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~------------------d~~--~kl~~tlvg--h~~~V~yi~wS 278 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY------------------DVH--FKLKKTLVG--HSQPVSYIMWS 278 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec------------------Ccc--eeeeeeeec--ccCceEEEEEC
Confidence 34999999999999999999999999999998642 222 122223444 99999999999
Q ss_pred cCCCeEEEEe-CCeEEEEECCCceEEEEeeC-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-cC
Q 001190 841 KNDSYVMSAT-GGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KR 917 (1128)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~ 917 (1128)
||.++|++++ +..+.+||+.+|.+...+.. +...+.+.+|.| ||..+++|+.|+++..||++. ..+...++-. ..
T Consensus 279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~ 356 (519)
T KOG0293|consen 279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPK 356 (519)
T ss_pred CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCc-chhhcccccccce
Confidence 9999999998 78899999999999888763 457899999999 999999999999999999874 4455555543 45
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecCCccc
Q 001190 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMER 996 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~ 996 (1128)
|.++++++||+++++.+.|..|++++..+.........+ .++++++.|.||+++++. .+..+.+||++..+.
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-------~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l 429 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-------QPITSFSISKDGKLALVNLQDQEIHLWDLEENKL 429 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-------CceeEEEEcCCCcEEEEEcccCeeEEeecchhhH
Confidence 999999999999999999999999999886544332222 789999999999999986 689999999999889
Q ss_pred ccccccCCCCCCCeEEEEEee-CCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC
Q 001190 997 IRQWTPQDALSAPISCAVYSC-NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1075 (1128)
Q Consensus 997 ~~~~~~~~~h~~~v~~l~~s~-dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1075 (1128)
++.+.++.. +.-+..-+|-. |.+++++|++|+.|+||+..+|.++..+. +|...+.+++|+|.++.
T Consensus 430 v~kY~Ghkq-~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls------------GHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 430 VRKYFGHKQ-GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS------------GHSKTVNCVSWNPADPE 496 (519)
T ss_pred HHHhhcccc-cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec------------CCcceeeEEecCCCCHH
Confidence 999888764 33444445543 66899999999999999999999999998 67788899999999999
Q ss_pred EEEEEECCCcEEEEcCCCC
Q 001190 1076 QFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1076 ~l~s~~~dg~i~iWd~~~~ 1094 (1128)
++|+||+||+||||.+...
T Consensus 497 m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGPSDN 515 (519)
T ss_pred HhhccCCCCeEEEecCCcc
Confidence 9999999999999977643
No 53
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.2e-33 Score=301.85 Aligned_cols=275 Identities=15% Similarity=0.199 Sum_probs=233.0
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
....++|..|++|+..++.|..|..|++|.+...+..+ ++ +...+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~------------------------lk---~~~~l-------- 421 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK------------------------LK---DASDL-------- 421 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhcc------------------------cc---chhhh--------
Confidence 55678999999999999999999999999875321100 00 00000
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEE
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 921 (1128)
..+=+.+ |-.+.+.|-.+....+++.+|.++|....|+| +.++|+++++|++||+|.+.+..++-.++||..+|+.+
T Consensus 422 -~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 422 -SNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred -ccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 0111111 22255666666777778999999999999999 99999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccccc
Q 001190 922 AFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQW 1000 (1128)
Q Consensus 922 ~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~ 1000 (1128)
.|+|.|-|+||+|.|++.++|..+....++.+ .+|- ..+.++.|+|+..|+++|+ |.++++||+.+|..++.+
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~~~PlRif-----aghl-sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF 573 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDHNKPLRIF-----AGHL-SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF 573 (707)
T ss_pred EecCCceEEEecCCCceeeeeecccCCchhhh-----cccc-cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe
Confidence 99999999999999999999999886554444 3444 7789999999999999975 999999999999999999
Q ss_pred ccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEE
Q 001190 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1080 (1128)
Q Consensus 1001 ~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~ 1080 (1128)
.+| .++|.+++|||+|++|++|++||.|.+||+.+|+.+..+. +|...+.++.|+. |++.||+|
T Consensus 574 ~GH---~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~------------~Ht~ti~SlsFS~-dg~vLasg 637 (707)
T KOG0263|consen 574 TGH---KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK------------GHTGTIYSLSFSR-DGNVLASG 637 (707)
T ss_pred cCC---CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh------------cccCceeEEEEec-CCCEEEec
Confidence 775 8999999999999999999999999999999999999888 6678889999999 79999999
Q ss_pred ECCCcEEEEcCCCCCC
Q 001190 1081 LTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1081 ~~dg~i~iWd~~~~~~ 1096 (1128)
|.|++|++||+..--.
T Consensus 638 g~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 638 GADNSVRLWDLTKVIE 653 (707)
T ss_pred CCCCeEEEEEchhhcc
Confidence 9999999999987654
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-31 Score=251.64 Aligned_cols=293 Identities=16% Similarity=0.242 Sum_probs=233.9
Q ss_pred CCCcccEEEEEEecC-cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEe
Q 001190 761 TDTSSKVVRLLYTNS-AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 839 (1128)
.+|.+++..++|+|. |..|++++.|..|++|+..... -|.. .. .+.+ .|...|++++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~c-----k~-vld~-~hkrsVRsvAw 69 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWTC-----KT-VLDD-GHKRSVRSVAW 69 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEEE-----EE-eccc-cchheeeeeee
Confidence 459999999999999 8899999999999999864210 0111 11 1111 48999999999
Q ss_pred ccCCCeEEEEe-CCeEEEEECC--CceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc---eeeecccc
Q 001190 840 SKNDSYVMSAT-GGKISLFNMM--TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD---EVKSKLKG 913 (1128)
Q Consensus 840 s~dg~~la~~~-dg~i~vwd~~--~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~ 913 (1128)
+|.|++||+++ |.++.||.-. ..+++.++.+|..+|.|++|++ +|.+||+++.|+.|.||.+..+ ++...++.
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 9999999876 4578899999999999999999 9999999999999999999854 67889999
Q ss_pred cccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecC
Q 001190 914 HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDAS 992 (1128)
Q Consensus 914 h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~ 992 (1128)
|+..|..+.|+|...+|+|+|.|.+|++|+-..+. .........++. ..+.+++|++.|..|++++ |+.++||...
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~tl~g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQTLDGHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEEEecCcc-ceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 99999999999999999999999999999877321 233344455555 5899999999999988875 8999999865
Q ss_pred CcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecC
Q 001190 993 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1072 (1128)
Q Consensus 993 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1072 (1128)
+. + ...|+..+..+.|. ...|++++.|+.|++|.-..+-. .+.+.......+.|...|.+++|.|.
T Consensus 226 ~~-----~--~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d-----~p~~~l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 226 TD-----L--SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPD-----EPSWNLLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred cC-----c--chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCC-----CchHHHHHhhhcccccccceEEEcCC
Confidence 21 2 22348899999998 44699999999999998764211 11111111112467778899999996
Q ss_pred CCCEEEEEECCCcEEEEcCC
Q 001190 1073 EPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1073 ~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
-.++|++|++||.|++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 68899999999999999875
No 55
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.3e-33 Score=277.61 Aligned_cols=284 Identities=17% Similarity=0.232 Sum_probs=241.0
Q ss_pred cccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCC
Q 001190 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 843 (1128)
...|..+.|.|+|++|++++..|.+.+|+... ++.+ ..+. +|..+|+++.||++|
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------fnFE------tilQ--aHDs~Vr~m~ws~~g 150 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------FNFE------TILQ--AHDSPVRTMKWSHNG 150 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-----------------eeHH------HHhh--hhcccceeEEEccCC
Confidence 45788999999999999999999999997421 1111 1122 399999999999999
Q ss_pred CeEEEEe-CCeEEEEECCCceEEEEeeC-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEE
Q 001190 844 SYVMSAT-GGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (1128)
Q Consensus 844 ~~la~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 921 (1128)
.++++|+ +|.|++|+..-. .+..+.+ |...|++++||| +...+++++.||+|+|||....+....+.||.-.|.++
T Consensus 151 ~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 151 TWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred CEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 9999998 899999998643 4444444 458999999999 67778899999999999999998888999999999999
Q ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccccc
Q 001190 922 AFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQW 1000 (1128)
Q Consensus 922 ~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~ 1000 (1128)
+|+|...++||+|.|..|++||.++|+++.++..+. ..|..+.|.+++.+|++++ |..+++||+++.+.+..+
T Consensus 229 dWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HK------ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK------NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCccceeEEccCCceeEeecCCCcchhhhhhhcc------ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 999999999999999999999999999876654442 7899999999999999976 999999999988887777
Q ss_pred ccCCCCCCCeEEEEEeeC-CCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEE
Q 001190 1001 TPQDALSAPISCAVYSCN-SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1079 (1128)
Q Consensus 1001 ~~~~~h~~~v~~l~~s~d-g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 1079 (1128)
++| ...|++++|+|- ..+|.+|+.||.|..|.+..-+.+..+. ++|...|-+++|+| -|.+|++
T Consensus 303 r~H---kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-----------~AHd~~iwsl~~hP-lGhil~t 367 (464)
T KOG0284|consen 303 RGH---KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-----------PAHDGEIWSLAYHP-LGHILAT 367 (464)
T ss_pred hcc---hhhheeeccccccccceeeccCCCceEEEeccccccccCCC-----------cccccceeeeeccc-cceeEee
Confidence 765 899999999994 4577789999999999998544444444 68888999999999 5999999
Q ss_pred EECCCcEEEEcCCCCC
Q 001190 1080 GLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1080 ~~~dg~i~iWd~~~~~ 1095 (1128)
|+.|.++++|......
T Consensus 368 gsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 368 GSNDRTVRFWTRNRPG 383 (464)
T ss_pred cCCCcceeeeccCCCC
Confidence 9999999999765443
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.7e-31 Score=300.91 Aligned_cols=290 Identities=24% Similarity=0.411 Sum_probs=248.5
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
+...|.++.|+++|+.+++++.++.+++|+..... + .....+.+ |...|.+++|+||
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~-----~~~~~l~~--h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S-----NLLRELSG--HTRGVSDVAFSPD 214 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c-----hhhccccc--cccceeeeEECCC
Confidence 46789999999999999999999999999763211 0 11112233 9999999999999
Q ss_pred CCeEEEEe-CCeEEEEEC-CCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 843 DSYVMSAT-GGKISLFNM-MTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~-~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
|+++++++ |++|++||+ ..+..++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 99999998 899999999 66689999999999999999999 7799999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCC-CccEEEEcCCCCEEEEEe-cCeEEEEecCCccccc
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPT-GDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
++|++++.+|++++.|+.|+|||+.++... .......+... .+..+.|+|++++++++. |+.+++||+..+..+.
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~ 370 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG 370 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee
Confidence 999999999999999999999999998843 22233333323 689999999999999986 7799999999999999
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCC-ccceEEEEEecCCCCEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ-TVYPLVVAAHPLEPNQF 1077 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~l 1077 (1128)
.+..+..-...+.+..++++|+++++|+.|+.|++||+.++..+..+. .| ...+..+.|+| ..+++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~------------~h~~~~~~~~~~~~-~~~~~ 437 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE------------GHSKAAVSDLSSHP-TENLI 437 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc------------CCCCCceeccccCC-CcCee
Confidence 998876311356666778899999999999999999999999888888 34 55668899999 58999
Q ss_pred EEEE--CCCcEEEEcCC
Q 001190 1078 AIGL--TDGSVKVMEPS 1092 (1128)
Q Consensus 1078 ~s~~--~dg~i~iWd~~ 1092 (1128)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 9998 79999999754
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=281.70 Aligned_cols=292 Identities=18% Similarity=0.287 Sum_probs=248.1
Q ss_pred CCcceEEeec-CCCcEEEEEEeC-CCCcEEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccCCCcce
Q 001190 333 LPRTVAVSLH-QGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1128)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fsp-dg~~lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1128)
+|....+++. |+..|+++.|.| .+. ||++|+.|+.|+||++.. ++++++ +.||..+|
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~V 261 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPV 261 (503)
T ss_pred ccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhh
Confidence 3566667765 999999999999 565 999999999999999977 666653 89999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEE
Q 001190 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1128)
Q Consensus 410 ~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~ 488 (1128)
..++|+++|..+++++.|+.|++||+++|+++..+ .....++++.|.||+.. .+++|+.|+.|+.|| .+|+.++
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f----~~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF----HLDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEEE----ecCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence 99999999999999999999999999999987643 23457899999999955 788899999999999 9999999
Q ss_pred EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee-eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
.+..|-+.|..+.|.+ +|.++++.++|+.+++|+.+..-... ....+.+...++...|++.++++-+. ++.|.
T Consensus 337 eYd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ 410 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIA 410 (503)
T ss_pred HHHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEE
Confidence 9999999999999966 77899999999999999987765443 33344557789999999999998874 88899
Q ss_pred EEeCCCC---ceeeEeccccCCc-eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCC
Q 001190 568 EWNESEG---TIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGN 642 (1128)
Q Consensus 568 ~wd~~~~---~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~ 642 (1128)
++.+... .....|+||.-.. -..+.|||||.+|++|+.||.+.+||.++-+++..+..+. ..+..+.|+| ...
T Consensus 411 ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEPS 488 (503)
T ss_pred EEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCcc
Confidence 9986543 3445677776533 3348999999999999999999999999999999998764 4789999999 567
Q ss_pred EEEEEEcCCcEEEEE
Q 001190 643 LLAVTTADNGFKILA 657 (1128)
Q Consensus 643 ~l~~~~~dg~i~iw~ 657 (1128)
.+|+++.+|.|++|+
T Consensus 489 kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 489 KVATCGWDGLIKIWD 503 (503)
T ss_pred eeEecccCceeEecC
Confidence 899999999999995
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=7.7e-30 Score=279.57 Aligned_cols=282 Identities=26% Similarity=0.421 Sum_probs=250.4
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
+|.+.|++++|+|+++ ++++|+.||.|.+|++.+++... .+.+|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 5899999999999998 77889899999999998876443 266788999999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
++++.||.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++|| .+++....+..|...|.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876555 4668999999999999987 788888899999999 7788889999999999999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+++||+.+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99774 578888888999999999888888888888889999999999998888874 889999999999998888
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
..+.. .+.++.|++++..+++++.||.|++|++.+++....+..+ ...+.+++|+|+++++++++.||.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77766 7899999999888888888999999999998888887744 44799999999999999999999999995
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=3.3e-31 Score=271.71 Aligned_cols=287 Identities=18% Similarity=0.266 Sum_probs=243.9
Q ss_pred CCCcccEEEEEEec-CcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEe
Q 001190 761 TDTSSKVVRLLYTN-SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~-~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 839 (1128)
.+|...|.++.|.| .+.+|++++.|+.|+||++- + .+.+++ .+.+ |..+|..++|
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy-------------------~--~~~~lr-tf~g--H~k~Vrd~~~ 266 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY-------------------D--DRRCLR-TFKG--HRKPVRDASF 266 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEe-------------------c--Ccceeh-hhhc--chhhhhhhhc
Confidence 45999999999999 88999999999999999853 3 334443 3444 9999999999
Q ss_pred ccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCe
Q 001190 840 SKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 918 (1128)
Q Consensus 840 s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 918 (1128)
+++|..+.+++ |+.|++||+++|+++..+. ....++|+.|.|++.+.+++|+.|+.|+.||+++++.++++..|-+.|
T Consensus 267 s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 267 NNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI 345 (503)
T ss_pred cccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhe
Confidence 99999999998 9999999999999999986 345689999999665999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecCCccc-
Q 001190 919 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMER- 996 (1128)
Q Consensus 919 ~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~- 996 (1128)
..+.|-++|+++++.+.|++++||+...+-.++.+... ......++..+|++.++++- -|+.|.+|.+...-.
T Consensus 346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~-----~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP-----EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred eeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch-----hhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence 99999999999999999999999999886543332211 11456789999999999995 499999999764332
Q ss_pred --ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCC
Q 001190 997 --IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1074 (1128)
Q Consensus 997 --~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1074 (1128)
-+.+.+|.. .+--..+.|||||++|++|+.||.+.+||.++-.++..+. .|...++.+.|+|...
T Consensus 421 nkkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk------------ah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 421 NKKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK------------AHDQPCIGVDWHPVEP 487 (503)
T ss_pred CHhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc------------cCCcceEEEEecCCCc
Confidence 234444443 4556788999999999999999999999999999988888 6666779999999988
Q ss_pred CEEEEEECCCcEEEEc
Q 001190 1075 NQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1075 ~~l~s~~~dg~i~iWd 1090 (1128)
..+++|+.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 8999999999999996
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.8e-31 Score=258.19 Aligned_cols=292 Identities=18% Similarity=0.272 Sum_probs=246.3
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
..+.+-+..|+|||+++++++-||.|.+|++..++...+-+. .......+ +..+|.|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY---------QAqd~fMM--------md~aVlci~FSRD 274 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY---------QAQDNFMM--------MDDAVLCISFSRD 274 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhh---------hhhcceee--------cccceEEEeeccc
Confidence 456678999999999999999999999999876543222221 11111111 7889999999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEee-CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
...+|+|+ ||+|++|.+.+|.+++.|. +|...|+|+.||. |+..+.+++.|.+++|--+.+|+++++++||+.-|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999 9999999999999999997 8999999999999 8888899999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC-CCEEEEEe-cCeEEEEecCCccccc
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
..|++||.++++++.||+|++|+.++.++..++.... ...++..+..-|. -..++++. .++++|-++. |..++
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~----~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVr 428 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG----TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVR 428 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC----CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEe
Confidence 9999999999999999999999999999887764432 2356777776664 34555554 7788888874 66777
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
.+....-..+...+.+.||.|.++++.++|+.++.|.+.+|.+...+. -|...+..++-+|+ .++++
T Consensus 429 sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~------------VhEkdvIGl~HHPH-qNllA 495 (508)
T KOG0275|consen 429 SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP------------VHEKDVIGLTHHPH-QNLLA 495 (508)
T ss_pred eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee------------cccccccccccCcc-cchhh
Confidence 776554446777888899999999999999999999999999988887 45556788999995 89999
Q ss_pred EEECCCcEEEEc
Q 001190 1079 IGLTDGSVKVME 1090 (1128)
Q Consensus 1079 s~~~dg~i~iWd 1090 (1128)
+-+.||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=8.4e-31 Score=256.09 Aligned_cols=281 Identities=15% Similarity=0.230 Sum_probs=224.3
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
....|.++.+. ...+++|..|++|++||... -.+. ..+.| |.+.|.|+.| |
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~----------------------~~c~-~~L~G--HtGSVLCLqy--d 246 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS----------------------LECL-KILTG--HTGSVLCLQY--D 246 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEecccc----------------------HHHH-Hhhhc--CCCcEEeeec--c
Confidence 55678888875 44589999999999997542 1121 23444 9999999998 6
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce---eeecccccccCe
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE---VKSKLKGHQKRI 918 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---~~~~l~~h~~~V 918 (1128)
.+.+++|+ |.+|+|||.++++++.++.+|...|..+.|+. .++++++.|.++.+||+.+.. +...+.||...|
T Consensus 247 ~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 247 ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 323 (499)
T ss_pred ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence 77999998 89999999999999999999999999999964 589999999999999998653 456789999999
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccc
Q 001190 919 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERI 997 (1128)
Q Consensus 919 ~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~ 997 (1128)
+.+.|+ .++++|++.|.+|++|++.+++.+.++.. |. ..+.++. -.|+++++|+ |.+|++||++.|.++
T Consensus 324 NvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~g-----Hk-RGIAClQ--Yr~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 324 NVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNG-----HK-RGIACLQ--YRDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred eeeccc--cceEEEecCCceEEEEeccceeeehhhhc-----cc-ccceehh--ccCeEEEecCCCceEEEEeccccHHH
Confidence 999995 56999999999999999999887555433 32 3333333 3567777764 999999999999999
Q ss_pred cccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEE
Q 001190 998 RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1077 (1128)
Q Consensus 998 ~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1077 (1128)
+.+++| ..-|.++.| |.+.+++|+.||.|+|||+.++..-......-.+.. .-.|.+.+..++| |...+
T Consensus 394 RvLeGH---EeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~---lv~hsgRVFrLQF---D~fqI 462 (499)
T KOG0281|consen 394 RVLEGH---EELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRT---LVEHSGRVFRLQF---DEFQI 462 (499)
T ss_pred HHHhch---HHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHh---hhhccceeEEEee---cceEE
Confidence 999887 789999999 688999999999999999998764322111100111 1256678899999 56899
Q ss_pred EEEECCCcEEEEcCCCCCC
Q 001190 1078 AIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1078 ~s~~~dg~i~iWd~~~~~~ 1096 (1128)
++++.|.+|-|||+.++-+
T Consensus 463 vsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 463 ISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EeccCCCeEEEEEcCCCCc
Confidence 9999999999999998753
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.1e-29 Score=308.44 Aligned_cols=291 Identities=14% Similarity=0.181 Sum_probs=236.5
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 420 (1128)
.|.+.|++++|+|+|+ ++|+|+.|+.|+|||......... . .......+ .+...|.+++|+| ++.+
T Consensus 481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~-~~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVEL-ASRSKLSGICWNSYIKSQ 547 (793)
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEe-cccCceeeEEeccCCCCE
Confidence 4899999999999998 789999999999999764211000 0 00011112 2356899999987 5789
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec-CCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~-d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~ 498 (1128)
||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..|.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 9999999999999999887665 5779999999999997 677 899999999999999 788888888755 5789
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCC-ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC----
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---- 573 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~---- 573 (1128)
++.|++ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++..+++++. |+.|++||+..
T Consensus 622 ~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 622 CVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISG 695 (793)
T ss_pred EEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCccc
Confidence 999854 367899999999999999998765 355677888899999997 7788888874 89999999974
Q ss_pred --CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe-----------cCCCCCCcceEEEcCC
Q 001190 574 --GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-----------AEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 574 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~v~~sp~ 640 (1128)
...+..+.+|.. .+.+++|++++.+|++|+.||.|++|+......+..+. ...+...|.+++|+|+
T Consensus 696 ~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 356788888876 78889999999999999999999999987664443221 1223346899999999
Q ss_pred CCEEEEEEcCCcEEEEEc
Q 001190 641 GNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~ 658 (1128)
+..|++|+.+|.|++|++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=244.36 Aligned_cols=286 Identities=19% Similarity=0.265 Sum_probs=253.5
Q ss_pred EeecCCCcEEEEEEeC---CCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 339 VSLHQGSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 339 ~~~~h~~~V~~v~fsp---dg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
..-+|..+|-.++||| +|- +|++++.|+.-.+-+=++|.-+.+ +.||.+.|.+..+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~ 68 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLN 68 (334)
T ss_pred EEcCCCcceeEEeccCCCCCce-EEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecC
Confidence 3446999999999985 774 899999999999999889888754 89999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCC
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGH 493 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h 493 (1128)
.+....|+++.|-+-+|||.-+|..+.. | .|..-|.+++|+.|.. +|++|+.++.++|+| ....+...+.+|
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~gh 142 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGH 142 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCC
Confidence 9999999999999999999999998773 3 6899999999999999 799999999999999 455677899999
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
.+.|..+.|... .+.|++.+.|++||+||.+++.....+... .+|+++.++++|++|.++. .+.|..||..+
T Consensus 143 tg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdaks 214 (334)
T KOG0278|consen 143 TGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAKS 214 (334)
T ss_pred CCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEecccc
Confidence 999999998764 367888899999999999999888877654 4699999999999988875 56799999999
Q ss_pred CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE
Q 001190 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1128)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 653 (1128)
..+++.+.... .|.+..++|+...+++|++|+.++.||..+++.+..+ ..++.++|.|+.|+|+|...++|+.||+|
T Consensus 215 f~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 215 FGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTI 291 (334)
T ss_pred ccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceE
Confidence 99999888765 4888899999999999999999999999999998885 34566799999999999999999999999
Q ss_pred EEEEcccC
Q 001190 654 KILANAIG 661 (1128)
Q Consensus 654 ~iw~~~~~ 661 (1128)
++|....+
T Consensus 292 rlWQt~~~ 299 (334)
T KOG0278|consen 292 RLWQTTPG 299 (334)
T ss_pred EEEEecCC
Confidence 99998765
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.6e-30 Score=243.22 Aligned_cols=305 Identities=17% Similarity=0.249 Sum_probs=264.7
Q ss_pred CCCcccEEEEEEe---cCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEE
Q 001190 761 TDTSSKVVRLLYT---NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (1128)
Q Consensus 761 ~~~~~~i~~l~~s---~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 837 (1128)
.+|+.+|..++|+ |+|-+|++++.||.-.+-+ -.+|.-+. .+.+ |.+.|.+.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~----------------------g~tgdwig-tfeg--hkgavw~~ 65 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRN----------------------GDTGDWIG-TFEG--HKGAVWSA 65 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhcc----------------------CCCCCcEE-eeec--cCcceeee
Confidence 4599999999998 5899999999987655422 22333222 2444 99999999
Q ss_pred EeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-eeeecccccc
Q 001190 838 ALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQ 915 (1128)
Q Consensus 838 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~ 915 (1128)
++..+....|+++ |=+-+|||.-+|..+..+. |..-|.+++|+. |.++|++|+.+.-++|||++.- ....++.+|+
T Consensus 66 ~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ght 143 (334)
T KOG0278|consen 66 TLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT 143 (334)
T ss_pred ecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence 9999988888887 8889999999999999886 888999999999 9999999999999999999864 4567899999
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcc
Q 001190 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKME 995 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~ 995 (1128)
+.|..+.|....+.++|.+.|++||+||..++...+.+... ..++++.+++||+++.++..+.|.+||..+.+
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-------s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-------SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG 216 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC-------CCCcceeeccCCCEEEEecCceeEEecccccc
Confidence 99999999998899999999999999999999988777666 78999999999999999999999999999999
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC
Q 001190 996 RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1075 (1128)
Q Consensus 996 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1075 (1128)
.++.+.. ...|.+.+++|+...+++|++|+.++.||..+|+.+.... .+|.+.|.++.|+| |+.
T Consensus 217 ~lKs~k~----P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-----------kgh~gpVhcVrFSP-dGE 280 (334)
T KOG0278|consen 217 LLKSYKM----PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-----------KGHFGPVHCVRFSP-DGE 280 (334)
T ss_pred ceeeccC----ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc-----------cCCCCceEEEEECC-CCc
Confidence 9998887 6789999999999999999999999999999999888753 26788899999999 799
Q ss_pred EEEEEECCCcEEEEcCCCCC--CCcccCCCCCCCccCCCCCC
Q 001190 1076 QFAIGLTDGSVKVMEPSESE--GKWGVSPPVDNGILNSRTTS 1115 (1128)
Q Consensus 1076 ~l~s~~~dg~i~iWd~~~~~--~~w~~~~p~~~~~~~~~~~~ 1115 (1128)
..++||.||+|++|...-++ +.|+-.-|.+.+...+++.-
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~eev~s~~e 322 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEEVASPKE 322 (334)
T ss_pred eeeccCCCceEEEEEecCCCchhhccccChhhhccccccccc
Confidence 99999999999999877553 35888888888877776653
No 65
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.3e-28 Score=223.85 Aligned_cols=312 Identities=17% Similarity=0.200 Sum_probs=242.5
Q ss_pred CcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
....+.++.....|.+|+|+|.|. +.|+|+...+.+|-.+..-..++... +.....+...-..-+.|.+.|.|.+
T Consensus 22 ~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred ceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEE
Confidence 345677788899999999999999 77999999999998654322111000 0000000111123567999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCc--ceeceeecccccceeEEEEecC---CCeEEEEEec-CCCeEEEEe-cCCCe
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSND--LRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG-DDKLIKVWE-LSGRK 486 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~--~~~~~~~~~h~~~v~~l~fs~d---~~~~~l~s~s-~d~~i~vWd-~~g~~ 486 (1128)
|||+|.+||+|+.|++|++.-.+...+ ...-..+.-|.+.|..++|..+ +.. +|++++ .|..|.+-| ..|..
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 999999999999999999986654332 2233357789999999999754 333 566654 477899999 99999
Q ss_pred EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC-------CCeEEEEEEcCCCCeEEEeeec
Q 001190 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
.+.+.||.+.|.++. +-++..+++|+.|.+|++||++...+..++... ...|.++++.|.|++|+++..
T Consensus 176 ~~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~- 251 (350)
T KOG0641|consen 176 FHALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA- 251 (350)
T ss_pred ceeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence 999999999999874 226689999999999999999988777665432 247999999999999999874
Q ss_pred cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe--eeEEEecCCCCCCcceEEE
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN--ILTSTDAEGGLPNLPRLRF 637 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~ 637 (1128)
|....+||++.++.++.|..|.. .|.++.|+|...++++++.|..|++-|+...- .+..+....+...+..+.|
T Consensus 252 ---dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw 327 (350)
T KOG0641|consen 252 ---DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW 327 (350)
T ss_pred ---CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEe
Confidence 88899999999999999999987 89999999999999999999999999986531 1112222234446788899
Q ss_pred cCCCCEEEEEEcCCcEEEEEcc
Q 001190 638 SKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 638 sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
+|..-.+++.+.|.++.+|-++
T Consensus 328 h~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 HPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCccceeeeccCcceEEEeccC
Confidence 9998889999999999999753
No 66
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=7.4e-29 Score=239.12 Aligned_cols=310 Identities=15% Similarity=0.226 Sum_probs=242.4
Q ss_pred ceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceeccccccccc-ccccCccccceeccCCCcceEEEEE
Q 001190 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWD-MAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 336 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
+....-.|++++.+.+|||||. ++|+|+.|-.|+|.|++..-- +..+.++.. ......+. .+.+-.|...|+++.|
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermla-ks~~~em~~~~~qa~hPv-IRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLA-KSKPKEMISGDTQARHPV-IRTLYDHVDEVNDLDF 180 (430)
T ss_pred ceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhh-hcchhhhccCCcccCCce-EeehhhccCcccceee
Confidence 3445556999999999999999 899999999999999872100 001111110 00011121 2358889999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe---
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--- 490 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~--- 490 (1128)
+|....|++|+.|++|+++|+......+.+..+ ....+|.++.|+|.|. +|+.|.+-.++++|| .+-++...-
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcc
Confidence 999999999999999999999765443333333 3567899999999999 889999999999999 666554333
Q ss_pred cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC-C-CCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-P-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~-~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
.+|.+.|+++.+++ .+++.++++.||.|++||--+.+++.++.. | +..|.+..|..+|+++++.+. |..+++
T Consensus 258 ~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkL 331 (430)
T KOG0640|consen 258 DQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKL 331 (430)
T ss_pred cccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeee
Confidence 46899999999866 668999999999999999888887766543 3 348999999999999999984 999999
Q ss_pred EeCCCCceeeEeccccC----CceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCE
Q 001190 569 WNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 643 (1128)
|.+.+++.+.++.|... ..-+...|+....+++.-. ..+.+.-||.+++..+..+.. +|.+.+..+.-||.+.-
T Consensus 332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPA 410 (430)
T ss_pred eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCc
Confidence 99999999999987521 1122345777777777755 467899999999887776654 67778999999999999
Q ss_pred EEEEEcCCcEEEEEc
Q 001190 644 LAVTTADNGFKILAN 658 (1128)
Q Consensus 644 l~~~~~dg~i~iw~~ 658 (1128)
+++++.|..+++|--
T Consensus 411 FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 411 FMTCSDDFRARFWYR 425 (430)
T ss_pred eeeecccceeeeeee
Confidence 999999999999964
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.3e-29 Score=256.22 Aligned_cols=283 Identities=20% Similarity=0.284 Sum_probs=239.5
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
..+.|.+++|||...+=+|+. ..-.+.||+..+...... +..-...|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 446799999999766545554 345799999887665532 333566899999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~ 501 (1128)
+|+..|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++|| .+......+.+|++.|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977755555 57899999999999998876 899999999999999 55555568999999999999
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc-eeeEe
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTY 580 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~ 580 (1128)
|+|. ++..++||+.||.|++||.+.......--.|+.+|..+.+-|.|..+++++ .+.+++||+.+|. .+..+
T Consensus 161 ~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 9976 457999999999999999998865555566889999999999999999996 6689999999654 55555
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
..|.. .|+|+++..++..|++++-|+.|++||..+.+.+..+...+ +|.+++.+|+++.++.|..+|.+.+-+..
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeehhh
Confidence 55666 89999999999999999999999999999999999987654 69999999999999999999998776433
No 68
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.5e-28 Score=266.35 Aligned_cols=246 Identities=24% Similarity=0.396 Sum_probs=217.9
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+.+|.++|++++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 67899999999999999999999999999999999877544 4678999999999999998 799999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+++.+..+..|...+.++.|++. +.++++++.||.|++||+.+.+....+..+...+.++.|+|++.+++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--- 154 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS--- 154 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc---
Confidence 777888889999999999999774 57888888899999999998777777877888999999999988888875
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
.++.|++||+.+++.+..+..+.. .+.++.|+++++.+++++.||.|++||+.+++.+..+..+ ...+.++.|+|+
T Consensus 155 -~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~ 230 (289)
T cd00200 155 -QDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPD 230 (289)
T ss_pred -CCCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCC
Confidence 388999999999999888887765 7999999999999999999999999999998888777543 337899999999
Q ss_pred CCEEEEEEcCCcEEEEEcccC
Q 001190 641 GNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+.++++++.+|.|++|++.++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998653
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=6.5e-30 Score=256.69 Aligned_cols=294 Identities=17% Similarity=0.225 Sum_probs=252.4
Q ss_pred CCCCCcceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcc
Q 001190 330 LDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (1128)
Q Consensus 330 ~~~~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (1128)
.+.+|......+. |.++|..+.|-++.. .|++|+.|..|++|++..++.-. ...+.|..++
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~ 221 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGN 221 (459)
T ss_pred hcccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCC
Confidence 3456677777777 999999999999965 57999999999999998776321 1248888999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE
Q 001190 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1128)
Q Consensus 409 V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~ 487 (1128)
|+.+.|.++++++++++.|+.+++|+++..+... +|.||++.|+++.|..... .+++|+.|.+|+.|| ..+.+.
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhee
Confidence 9999999999999999999999999999976555 6899999999999998877 599999999999999 777777
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
.++.. ...+..++.. ...+++|..|+.||+||.+..........++ .|+++..+++|..+++++. |..+.
T Consensus 297 kt~l~-~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~ 366 (459)
T KOG0288|consen 297 KTVLP-GSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLK 366 (459)
T ss_pred ccccc-cccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCcee
Confidence 66542 3345555543 3578999999999999999999888888776 8999999999999999974 88999
Q ss_pred EEeCCCCceeeEeccccC---CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEE
Q 001190 568 EWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 644 (1128)
+.|+++.+..+.+..... ...+.+.|+|++.|+++||.||.|+||++.++++...+...+....|++++|+|.|..+
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL 446 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence 999999998888765321 23677999999999999999999999999999999998877665579999999999999
Q ss_pred EEEEcCCcEEEE
Q 001190 645 AVTTADNGFKIL 656 (1128)
Q Consensus 645 ~~~~~dg~i~iw 656 (1128)
++++.++.+.+|
T Consensus 447 lsadk~~~v~lW 458 (459)
T KOG0288|consen 447 LSADKQKAVTLW 458 (459)
T ss_pred hcccCCcceEec
Confidence 999999999998
No 70
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.4e-29 Score=229.79 Aligned_cols=247 Identities=19% Similarity=0.257 Sum_probs=218.8
Q ss_pred ceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 399 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
...+..|.++|..+.|+-||+|.++|+.|++|++|+...|.+++ ++.+|...|.+++.+.|+. .+++|+.|+.+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 34588999999999999999999999999999999999998887 6889999999999999998 799999999999
Q ss_pred EEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC--ceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 479 vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+|| .+|+.++++.+|.+.|+.+.|+. +...+++|+.|..+++||-+... .+..+......|.++.++ +..|++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 999 99999999999999999999954 66899999999999999987654 444555566678888765 456777
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceE
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1128)
++. ||+++.||++.|++...+.++ +|++++|+++++..++++.|+++++.|.++|+++....+|....--...
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 774 999999999999987777765 7999999999999999999999999999999999999877665444567
Q ss_pred EEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 636 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++.....+++|+.||.|.+||+...
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccc
Confidence 78888889999999999999999776
No 71
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.5e-28 Score=299.19 Aligned_cols=324 Identities=12% Similarity=0.147 Sum_probs=241.5
Q ss_pred CCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceecc
Q 001190 736 DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (1128)
Q Consensus 736 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1128)
|-+++|+.......... .......|.+.|.+++|+|+|.++++++.|+.|++|++..... .+...
T Consensus 458 gl~~~~~~~~~~~~~~~---~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~~~---------- 522 (793)
T PLN00181 458 GLCKYLSFSKLRVKADL---KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGRDI---------- 522 (793)
T ss_pred hhhhhhcccceEEEEee---ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--ccccc----------
Confidence 55666765532221111 1111234889999999999999999999999999998653110 00000
Q ss_pred CCCccccccccCCCCCCCeeEEEecc-CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeC
Q 001190 816 SSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1128)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~ 893 (1128)
. ... ..+ .+...+.+++|++ ++.+|++++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.
T Consensus 523 ~--~~~-~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 523 H--YPV-VEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred c--cce-EEe---cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence 0 000 001 1346788999987 478899888 9999999999999999999999999999999757899999999
Q ss_pred CCcEEEEecccceeeecccccccCeeEEEEc-CCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEc
Q 001190 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFS-TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 972 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s-~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 972 (1128)
||+|++||+.++..+..+..| ..|.++.|+ ++|.+|++|+.|+.|++||+.+++.. .....+|. ..+..+.|.
T Consensus 597 Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~----~~~~~~h~-~~V~~v~f~ 670 (793)
T PLN00181 597 DGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP----LCTMIGHS-KTVSYVRFV 670 (793)
T ss_pred CCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc----ceEecCCC-CCEEEEEEe
Confidence 999999999999888888755 679999995 57999999999999999999875421 11122333 678999997
Q ss_pred CCCCEEEEE-ecCeEEEEecCCc------ccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEe
Q 001190 973 ADQVRMLVV-HETQLAIYDASKM------ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 973 ~d~~~l~~~-~d~~i~v~d~~~~------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1045 (1128)
++.+++++ .|+.|++||+..+ ..+..+.. |...+.+++|++++++|++|+.||.|++|+......+...
T Consensus 671 -~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g---h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 671 -DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG---HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred -CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC---CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence 66677765 5999999999753 34444444 4788999999999999999999999999998877655433
Q ss_pred CCCCCCC-CcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcC
Q 001190 1046 APSTYLS-PSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1046 ~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
....... .......+...+.+++|+| ++..|++|+.||.|+||++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 2111110 0001124456789999999 6899999999999999986
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.7e-28 Score=243.95 Aligned_cols=290 Identities=19% Similarity=0.318 Sum_probs=241.8
Q ss_pred CCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE
Q 001190 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
-.+......+-|.++|.++... ++ .+.+|+.||.++|||.. |+... .+.||.++|.+
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~ 149 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKS 149 (423)
T ss_pred cCCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEE-------------------EEecCCcceee
Confidence 3456667778899999999999 45 67899999999999975 55543 38899999998
Q ss_pred EEEccCC---CEEEEEeCCCeEEEEEccCCCcce-eceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC---
Q 001190 412 VAWSPDG---NYVGVAFTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS--- 483 (1128)
Q Consensus 412 l~~spdg---~~las~~~d~~i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~--- 483 (1128)
++|--.. ..+++++.|.++++|.++.++... ......||...|.++...++|. .+++|+.|.+|+||+ ..
T Consensus 150 v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~ 227 (423)
T KOG0313|consen 150 VAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEE 227 (423)
T ss_pred eEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcc
Confidence 8885433 369999999999999998876432 2223459999999999999999 899999999999998 21
Q ss_pred ----------------------CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeE
Q 001190 484 ----------------------GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541 (1128)
Q Consensus 484 ----------------------g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i 541 (1128)
+.++..+.||.++|.++.|.. ...+++++.|.+|+.||+.+++....+.. ....
T Consensus 228 ~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl 303 (423)
T KOG0313|consen 228 DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSL 303 (423)
T ss_pred ccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-Ccce
Confidence 124567899999999999975 35899999999999999999988877664 4468
Q ss_pred EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc---eeeEeccccCCceeEEEEeCCCC-EEEEEECCCcEEEEECCCC
Q 001190 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~ 617 (1128)
.++.++|..++|++++. +..+++||.+++. ..+.|.+|.+ -|..+.|+|... .|++|+.|+++++||+++-
T Consensus 304 ~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 99999999999999985 8899999998764 5678899998 899999999764 5777999999999999987
Q ss_pred e-eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 618 N-ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 618 ~-~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
. ++..+..| ...|.++.|+. +..+++|+.|.+|+|+..
T Consensus 379 k~plydI~~h--~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 379 KAPLYDIAGH--NDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCcceeeccC--CceEEEEeccC-CceEEeccCcceEEEecc
Confidence 7 88888765 44899999974 568999999999999864
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.1e-28 Score=278.96 Aligned_cols=305 Identities=18% Similarity=0.262 Sum_probs=250.2
Q ss_pred CCCcEEEEEEeCCCCcEEEEee--ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
+...|.+++.+|||. .+|||+ .|+.++||+.+.=-. ..+.++.. .+.....+..|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 456699999999999 679999 899999999653110 01111111 22233457789999999999999999
Q ss_pred EEEEeCCCeEEEEEccC----------C-----CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC
Q 001190 421 VGVAFTKHLIQLYSYAG----------S-----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~----------~-----~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g 484 (1128)
||+|++|+.|.||+... | +..+....+.+|...|.+++|+|++. +||+++.|++|.||| .+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 0 11234457889999999999999999 899999999999999 889
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC------CeEEEEEEcCCCCeEEEeee
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG------HWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~------~~i~~~~~s~~g~~l~~~~~ 558 (1128)
+.+..+.+|.+.|..+.|.| -|+++++-+.|++|++|+....+....+..+- .....+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999966 67999999999999999977655655554432 25788999999999999887
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCC-----CC------------EEEEEECCCcEEEEECCCCeeeE
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QN------------HFLAVGEDSQIKFWDMDNVNILT 621 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~s~dg~i~iwd~~~~~~~~ 621 (1128)
...+...+.|.+-.+.+.-..+-||.. ++.++.|+|. .+ .+++|+.|+.|-||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 667788999999988898999999998 8999999872 11 56778999999999998877766
Q ss_pred EEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
....-. ...|..++|+|||..|.+++.||+|.++.+...
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 543322 237999999999999999999999999988764
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-27 Score=225.32 Aligned_cols=287 Identities=12% Similarity=0.141 Sum_probs=238.0
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
+..-+|+.+++.+.|+.+|. ||.+++.|.++.+|--.+|+.+.+ +.||++.|.|+..+-+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 34456999999999999999 889999999999999889998865 8999999999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC-----CCeEEEEe-c-------CC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKLIKVWE-L-------SG 484 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~-----d~~i~vWd-~-------~g 484 (1128)
.+++++|+.|.++++||+++|+++... ....+|..+.|+.+|.. ++.+.+ .+.|.++| . ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 999999999999999999999988743 35678999999999993 443332 36789999 4 34
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee-eecCCCCeEEEEEEcCCCCeEEEeeeccCCC
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
.+...+..+...++.+.|.+. +++|++|..||.|..||++++.... .-..|...|+.+.+++|..++++++. |
T Consensus 138 ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----D 211 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----D 211 (327)
T ss_pred CceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----C
Confidence 567888889999999999774 5799999999999999999875554 44678889999999999999999984 8
Q ss_pred ceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC--cEEEEECCCCe------------eeEEEecCCCC
Q 001190 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVN------------ILTSTDAEGGL 629 (1128)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~------------~~~~~~~~~~~ 629 (1128)
.+-++||..+.+.++++.... ++++.+++|-..+++.|+... .|.-=+.+.|+ .+... .+|.
T Consensus 212 ttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv--kGHF 287 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV--KGHF 287 (327)
T ss_pred ccceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc--cccc
Confidence 899999999999999998764 799999999888888876322 22222222232 22233 3667
Q ss_pred CCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
++|++++|+|+|+..++|+.||.|++.-...
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 7999999999999999999999999986654
No 75
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.9e-27 Score=266.78 Aligned_cols=294 Identities=17% Similarity=0.274 Sum_probs=253.2
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1128)
.|+....+......-.+...|.|..|+ +| .+++|+.|++|++||..++..+.. .+.||.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~ 249 (537)
T KOG0274|consen 191 NWRKLFRRGYKVLLGTDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHF 249 (537)
T ss_pred cccccccccceeecccCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCC
Confidence 455544444444444578889999999 54 478999999999999999887642 288999
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~ 485 (1128)
+.|.+++|..-+.+|++|+.|.+++|||..+|++.. ++.+|...|.++...+. ++++|+.|.+|++|+ .++.
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcc
Confidence 999999998888999999999999999999999887 58899999999988644 689999999999999 8899
Q ss_pred eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCce
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 565 (1128)
.+..+.+|.++|.++.++ +.++++|+.|++|++||+.++++...+.+|...|.++.+.+. ..+++++. |+.
T Consensus 323 ~l~l~~~h~~~V~~v~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~ 393 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTT 393 (537)
T ss_pred eEEEeccccccEEEEEec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccc
Confidence 999999999999999874 569999999999999999999999999999999999988766 78888886 899
Q ss_pred EEEEeCCCC-ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEE
Q 001190 566 LVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 566 i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 644 (1128)
|++||++++ +++.++.+|.. .+..+.+ .+++|++++.|+.|++||.++++++..+... +...|.++++. ...+
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEI 467 (537)
T ss_pred eEeecCCchhhhhhhhcCCcc-ccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceE
Confidence 999999999 99999999987 5544443 4689999999999999999999999999874 33467777765 4688
Q ss_pred EEEEcCCcEEEEEcccCcc
Q 001190 645 AVTTADNGFKILANAIGLR 663 (1128)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~ 663 (1128)
++++.+|.+.+||+.++..
T Consensus 468 l~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EEEecCCeeEEEecccCch
Confidence 9999999999999999843
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-26 Score=219.84 Aligned_cols=233 Identities=14% Similarity=0.228 Sum_probs=201.9
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||-..+|+.+. ++.||++.|++++...+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999998998776 6889999999999999999 89999999999999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec-----cCcEEEEecC-------CCCceeeecCCCCeEEEEEEc
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYD-------TMGSRVDYDAPGHWCTTMLYS 547 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~~wd~~-------~~~~~~~~~~~~~~i~~~~~s 547 (1128)
| .+|+++..+. ...+|..+.|++ +|.+++.... .+.|.++|++ ..++...+..+...++.+.|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999999887 466899999977 4455555543 3678999987 344566777788899999999
Q ss_pred CCCCeEEEeeeccCCCceEEEEeCCCCce-eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC
Q 001190 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1128)
Q Consensus 548 ~~g~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 626 (1128)
|-++.|++|. .++.|..||+++|+. +..-+.|.. .|+.++++++..++++++.|.+-++||..+.+.++++...
T Consensus 157 ~l~~~ii~Gh----e~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGH----EDGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEec----CCCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 9999999997 599999999999854 455566665 8999999999999999999999999999999999998754
Q ss_pred CCCCCcceEEEcCCCCEEEEEEc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTTA 649 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~~ 649 (1128)
.+|++.+++|-...++.|+.
T Consensus 232 ---~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred ---ccccceecccccceEEecCC
Confidence 37999999998777777654
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.3e-27 Score=270.28 Aligned_cols=305 Identities=16% Similarity=0.246 Sum_probs=243.7
Q ss_pred CcccEEEEEEecCcceEEEee--ccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 763 TSSKVVRLLYTNSAVGLLALG--SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
+...|.++..+|||..+++++ .||.+++|+.+.--. +...++..-...+. .+. .|.+.|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~-~m~--~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLC-TMD--DHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhe-eec--cccCceeEEEEC
Confidence 345589999999999999999 799999998653110 11122222111111 112 389999999999
Q ss_pred cCCCeEEEEe-CCeEEEEECCC------------------ceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001190 841 KNDSYVMSAT-GGKISLFNMMT------------------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1128)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd 901 (1128)
+||++||+|+ |..|.||+... .+.+..+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 56689998762 246778899999999999999 999999999999999999
Q ss_pred cccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE
Q 001190 902 VRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1128)
Q Consensus 902 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 981 (1128)
..+.++++++++|.+.|.++.|.|-|+||||-+.|++|+||++.+....+.+.-..........+..+.|||||.+|++.
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 99999999999999999999999999999999999999999988766555554443333333678899999999999984
Q ss_pred e-----cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeC-----CC------------EEEEEecCCcEEEEecCCC
Q 001190 982 H-----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN-----SQ------------LVFATFCDGNIGVFDADTL 1039 (1128)
Q Consensus 982 ~-----d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~------------~l~t~~~dg~i~vwd~~~~ 1039 (1128)
. ...+.|.+-.+-+.-..+.+| ..++.++.|+|. .+ .+|+|+.|++|.||.....
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~~LvGH---~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDKDLVGH---SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred hhccCCcceeEEEecCCceeeeeeecC---CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 2 456888887776666666665 789999999981 11 5678999999999999888
Q ss_pred ceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1040 RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
+.+..+.. --...|+.++|+| ||..|+++|.||+|.+..+++.|.
T Consensus 315 RPl~vi~~-----------lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 315 RPLFVIHN-----------LFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred Cchhhhhh-----------hhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHh
Confidence 77666551 2223569999999 799999999999999999987754
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.9e-27 Score=225.69 Aligned_cols=274 Identities=17% Similarity=0.254 Sum_probs=222.1
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCC-ceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
.-++.|.+++|||....++++||-|++|++|+++.. ...- +....|.++|.+++|+.||..
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSK 86 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCce
Confidence 356789999999966668889999999999999873 3321 236679999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~ 499 (1128)
+++|+.|+.+++||+.+++... +..|.++|..+.|.+...+..|+|||.|++|+.|| ....++.++.- .+++++
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~~----v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa 161 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVSQ----VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYA 161 (347)
T ss_pred EEeeccCCceEEEEccCCCeee----eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeee
Confidence 9999999999999999996443 67899999999999876655899999999999999 77778877763 456777
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-C-CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC--c
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-A-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--T 575 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~-~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~--~ 575 (1128)
+.+-. ..++++..++.|.+|+++....+.... . -.-.++|++.-+|.+..+.|+. +|.+.+..+..+ +
T Consensus 162 ~Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 162 ADVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPK 233 (347)
T ss_pred hhccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCcc
Confidence 76532 478999999999999997655443221 1 2336889998888887788875 888888888776 5
Q ss_pred eeeEeccccC--------CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001190 576 IKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1128)
Q Consensus 576 ~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 647 (1128)
.-.+|+.|.. ..|..++|+|.-..|+++|.||++.+||.+....+...+.+. .+|.+..|+.+|.+++.+
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEEEE
Confidence 5567777763 236778999999999999999999999998877777766544 489999999999998876
Q ss_pred E
Q 001190 648 T 648 (1128)
Q Consensus 648 ~ 648 (1128)
.
T Consensus 312 ~ 312 (347)
T KOG0647|consen 312 L 312 (347)
T ss_pred e
Confidence 4
No 79
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=1.4e-25 Score=236.12 Aligned_cols=662 Identities=14% Similarity=0.169 Sum_probs=358.1
Q ss_pred eeccCCCcceEEEEEcc-CCCEEEEEeCCCeEEEEEccCCCcce---eceeecccccceeEEEEecCCCeEEEEEecCCC
Q 001190 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~vwd~~~~~~~~---~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
.++.+|...|+.+.||| +..+||+|+.|..|+||.+..|-... .-..+.+..-.|.++.|+|.... +++++. .|
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s~a-~g 150 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILASGA-HG 150 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEecc-Cc
Confidence 45889999999999999 67799999999999999998542211 11123334557889999997664 455554 79
Q ss_pred eEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce-eeecCCCC-eEEEEEEcCCCCe
Q 001190 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDAPGH-WCTTMLYSADGSR 552 (1128)
Q Consensus 476 ~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~-~i~~~~~s~~g~~ 552 (1128)
+++||| .+++.+..+.+|.+.|.++.|+. ||.+|++.+.|..|+|||.+..... .....|++ .-..+.|..+-.+
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r 228 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER 228 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence 999999 99999999999999999999954 8899999999999999998875443 34455544 3445677766668
Q ss_pred EEEeeeccCCCceEEEEeCCC-CceeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEE--EecCCC
Q 001190 553 LFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTS--TDAEGG 628 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~--~~~~~~ 628 (1128)
|++.+.+......|++||.+. +..+.++.......+..--|.||.+.++.++ .+.+++.+.+...++... +.....
T Consensus 229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle 308 (1012)
T KOG1445|consen 229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLE 308 (1012)
T ss_pred hhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcch
Confidence 888776655677899999876 3455555554443455567889988777765 677888888766543211 111000
Q ss_pred CCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCc----------cccccccC----------------CccccccCccee
Q 001190 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL----------RSLRAVEN----------------PPFEALRTPIES 682 (1128)
Q Consensus 629 ~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~----------------~~~~~~~~~i~~ 682 (1128)
......++-|...+-+..+. ..+++.+.... +..+.+.. .-..+....+..
T Consensus 309 -~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqK 385 (1012)
T KOG1445|consen 309 -EQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQK 385 (1012)
T ss_pred -hhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccc
Confidence 01122222232111111111 11111111110 00000000 000011111222
Q ss_pred eeeecccccccccCCCCcceec---ccCCCCCcccccC-CCC----------CCCCCC-CCcccCCCCCCCCcceeE---
Q 001190 683 VALKVSASSAVSSGTPANCKVE---RSSPVRPSPIING-VDP----------TSRSMD-KPRTVDDVTDKPKPWQLA--- 744 (1128)
Q Consensus 683 ~~~s~~g~~l~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~----------~~~~~~-~~l~~~~~d~~i~vw~~~--- 744 (1128)
+.+.|..+.- ..+....+. .........++.. ... ...|+- ..-++. ....++-.+..
T Consensus 386 vSl~Pa~r~h---~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~-~~~e~r~l~~~~~E 461 (1012)
T KOG1445|consen 386 VSLAPAQRSH---SPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP-KKEEVRELDYRPYE 461 (1012)
T ss_pred cccCchhccC---CCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC-cchhhhhhcccccc
Confidence 2222221110 000000000 0000000000000 000 000110 000000 00001100000
Q ss_pred --EEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEee----cc--ceeEee------eccccCCCCCCceee----
Q 001190 745 --EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG----SN--GVQKLW------KWHRNEQNPSGKATA---- 806 (1128)
Q Consensus 745 --~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~----~d--g~i~lw------~~~~~~~~~~~~~~~---- 806 (1128)
.+...... ......+.++.+..+. |....++--. .+ .+..+. .+.....+..|....
T Consensus 462 ~~~g~~~~~~---dad~~~g~sS~~s~~~--~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~ 536 (1012)
T KOG1445|consen 462 KENGVHTPNA---DADSTQGNSSPISTIS--PEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNR 536 (1012)
T ss_pred cccCccCCCc---ccccccCCCCCccccC--CCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcccccc
Confidence 00000000 0000001111111110 0000000000 00 000000 000000000000000
Q ss_pred -------------eeccceeccCCCcccc-----ccccCCCCCCCeeEEEeccCCCeEEEE---eCCeEEEEECCCc-eE
Q 001190 807 -------------SAVPQHWLPSSGLLMA-----NDVAGVNLEEAVPCIALSKNDSYVMSA---TGGKISLFNMMTF-KV 864 (1128)
Q Consensus 807 -------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~dg~~la~~---~dg~i~vwd~~~~-~~ 864 (1128)
...+.-+.-..|.... ..+.+.+..-+-.+=-|..+.+++|+- +.|.|.||++..- ++
T Consensus 537 v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrL 616 (1012)
T KOG1445|consen 537 VPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRL 616 (1012)
T ss_pred ccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCC
Confidence 0000001111111100 011111111111222344456666653 4789999998642 22
Q ss_pred E-EEeeC--CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-------eeeecccccccCeeEEEEcCC-CCEEEEE
Q 001190 865 M-TTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-------EVKSKLKGHQKRITGLAFSTS-LNILVSS 933 (1128)
Q Consensus 865 ~-~~~~~--~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d-~~~l~s~ 933 (1128)
- ..+.+ ....|+.+.|.|.|...||++++||.|++|.+..+ .....+.+|...|+++.|+|- ...|+++
T Consensus 617 PDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a 696 (1012)
T KOG1445|consen 617 PDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA 696 (1012)
T ss_pred CcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhh
Confidence 1 11111 34469999999999999999999999999999865 334668899999999999995 4589999
Q ss_pred cCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE-EecCeEEEEecCCccc-ccccccCCCCCCCeE
Q 001190 934 GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMER-IRQWTPQDALSAPIS 1011 (1128)
Q Consensus 934 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~v~d~~~~~~-~~~~~~~~~h~~~v~ 1011 (1128)
+.|.+|++||+.+++....+. +|. ..|..++|||||+.+++ +.||+++||.-++++. +..-.+.. ...--
T Consensus 697 syd~Ti~lWDl~~~~~~~~l~-----gHt-dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv--gtRgA 768 (1012)
T KOG1445|consen 697 SYDSTIELWDLANAKLYSRLV-----GHT-DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV--GTRGA 768 (1012)
T ss_pred hccceeeeeehhhhhhhheec-----cCc-CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc--cCcce
Confidence 999999999999977544433 333 88999999999999998 5699999999987765 33322222 44556
Q ss_pred EEEEeeCCCEEEEEecCC----cEEEEecCCCce--EEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCc
Q 001190 1012 CAVYSCNSQLVFATFCDG----NIGVFDADTLRL--RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGS 1085 (1128)
Q Consensus 1012 ~l~~s~dg~~l~t~~~dg----~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~ 1085 (1128)
.+.|.-||+++++.+.|. .|.+||.++... +.+.... -+- .++--.|.++.+-+|++|-.|..
T Consensus 769 Ri~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD---------vap--s~LvP~YD~Ds~~lfltGKGD~~ 837 (1012)
T KOG1445|consen 769 RILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD---------VAP--SPLVPHYDYDSNVLFLTGKGDRF 837 (1012)
T ss_pred eEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec---------ccC--ccccccccCCCceEEEecCCCce
Confidence 788999999999877554 689999887542 2222100 011 11222345555678899999999
Q ss_pred EEEEcCCCCCC
Q 001190 1086 VKVMEPSESEG 1096 (1128)
Q Consensus 1086 i~iWd~~~~~~ 1096 (1128)
|.+|++...++
T Consensus 838 v~~yEv~~esP 848 (1012)
T KOG1445|consen 838 VNMYEVIYESP 848 (1012)
T ss_pred EEEEEecCCCc
Confidence 99999877654
No 80
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3e-26 Score=259.08 Aligned_cols=287 Identities=13% Similarity=0.101 Sum_probs=222.7
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 421 (1128)
|-..|....+++|+..+ ++++.+..+..|+...+..+. +.............+.||.+.|.+++|+| ++.+|
T Consensus 19 ~~~~i~~~~~~~d~~~~-~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNT-IACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCCc-EeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 44567788888897644 666677888889876554321 11111111112235889999999999999 89999
Q ss_pred EEEeCCCeEEEEEccCCCcc----eeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCC
Q 001190 422 GVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~ 496 (1128)
|+|+.|++|++||+.++... .....+.+|...|.+++|+|++.. +|++|+.|++|+||| .+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 99999999999999875321 223368899999999999998643 799999999999999 888889999999999
Q ss_pred eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCe-EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc
Q 001190 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1128)
|.+++|++ ++.+|++++.|+.|++||++++.....+..|.+. +..+.|.+++..+++++.+...++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999977 6789999999999999999998887777777653 45678899988888877555568999999998754
Q ss_pred -eeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 576 -IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 576 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
.......+....+....|+++++.+++++ .|+.|++||+.+++.+...... ...++..++|.|.
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk 314 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPK 314 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEeccc
Confidence 34444444443566678899999999988 5999999999999887765443 3346788888885
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.7e-26 Score=222.25 Aligned_cols=290 Identities=14% Similarity=0.196 Sum_probs=231.8
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
..+.|.++.|+++|..+++++.|..+++||... |..... +.. ++..+..++|...
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------g~~~~t-i~s--kkyG~~~~~Fth~ 67 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------GKQVKT-INS--KKYGVDLACFTHH 67 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------CceeeE-eec--ccccccEEEEecC
Confidence 567899999999999999999999999997543 222221 111 5567888899887
Q ss_pred CCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCee
Q 001190 843 DSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 919 (1128)
Q Consensus 843 g~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 919 (1128)
...++.++ |.+|+..++.+.+.++.|.||...|+.++.+| .+..+++++.|++|++||++..++...+.....+
T Consensus 68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-- 144 (311)
T KOG1446|consen 68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-- 144 (311)
T ss_pred CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence 77766665 67899999999999999999999999999999 6788999999999999999988777666543333
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccc
Q 001190 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 920 ~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
.++|.|.|-++|.+.....|++||++............... .....+.+.|||||++++.+. .+.+++.|.-+|..+.
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~-~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN-DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS 223 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCC-CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee
Confidence 58899999999999888899999998764433333333322 227889999999999999876 7789999999999888
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
.+..+.....--...+|+||++++++|+.||+|.||++++|..+..+.+. +...+.++.|+| .+.+
T Consensus 224 tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-----------~~~~~~~~~fnP---~~~m 289 (311)
T KOG1446|consen 224 TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-----------NGGPVSCVRFNP---RYAM 289 (311)
T ss_pred eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-----------CCCCccccccCC---ceee
Confidence 87776542333367889999999999999999999999999999999832 344557788988 3555
Q ss_pred EEECCCcEEEEcCCCCC
Q 001190 1079 IGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1079 s~~~dg~i~iWd~~~~~ 1095 (1128)
.++.+..+.+|=+...+
T Consensus 290 f~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 290 FVSASSNLVFWLPDEDA 306 (311)
T ss_pred eeecCceEEEEeccccc
Confidence 55667799999887665
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=262.79 Aligned_cols=300 Identities=16% Similarity=0.202 Sum_probs=215.7
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc---CC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DG 418 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---dg 418 (1128)
.|.+.|||+.||+||+ |||+|+.|+.|+||.+...+.... .. ......+.. + .-.+.+.-+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~---~~---~~~~~~~~~--~-~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRV---AE---GDSSCMYFE--Y-NANSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcc---cc---cccchhhhh--h-hhccccCccccccccccc
Confidence 5999999999999999 789999999999999976433210 00 000000000 0 0000011111111 01
Q ss_pred C--EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCC
Q 001190 419 N--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1128)
Q Consensus 419 ~--~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~ 495 (1128)
+ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|+|++.|+||++|+ ....++..|. |.+
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 1 11122222222221111111112334688999999999999887 699999999999999 7788888887 999
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1128)
-|+|++|+|.. .+++++|+-||.||||++...+...-.. -..-|++++|+|||+..++|+. +|..++|+....+
T Consensus 411 fVTcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 411 FVTCVAFNPVD-DRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred eeEEEEecccC-CCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 99999999985 5899999999999999996654444333 3467999999999999999996 8999999999887
Q ss_pred eeeEecccc-------CCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001190 576 IKRTYAGFR-------KKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1128)
Q Consensus 576 ~~~~~~~~~-------~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 647 (1128)
++..+.-+. ...|+.+.|.|.. ..+++.+.|..|+|+|.++..++..+.+......-....|+.||++|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 766554221 2258889888644 46888999999999999999998888866555555678899999999999
Q ss_pred EcCCcEEEEEcccC
Q 001190 648 TADNGFKILANAIG 661 (1128)
Q Consensus 648 ~~dg~i~iw~~~~~ 661 (1128)
+.|..|++|+....
T Consensus 565 seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSF 578 (712)
T ss_pred ecCceEEEEeCCCC
Confidence 99999999998553
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.9e-26 Score=217.85 Aligned_cols=274 Identities=15% Similarity=0.216 Sum_probs=234.3
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 420 (1128)
+|...|.+|+|+-+|+ .||+|+.|+++.+|+++..+.... -...+|.+.|-.++|+| ....
T Consensus 18 ~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcc
Confidence 5888999999999999 679999999999999988754432 23778999999999998 5678
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~ 499 (1128)
+|+++.|.+|++||+..+++.... . ..+.=.-+.|+|+|. +++.++.|..|.+.| .+.+.....+ ..-.+.-
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne 152 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNE 152 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeee
Confidence 999999999999999999987743 2 233344688999999 799999999999999 6555554443 3445777
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
++|+. ++.+++.....|.|.|-.+...+....+..|.....|+.|+|+|+++++|+. |..+.+||+...-+++.
T Consensus 153 ~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 153 ISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERC 226 (313)
T ss_pred eeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhee
Confidence 88874 3356666666799999999988999999999999999999999999999995 89999999999999999
Q ss_pred eccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC
Q 001190 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
+..+.- +|..+.|+.+|++|+++|+|..|-|=+.++|..+..++..+ +...|+|+|...+||.+.+|
T Consensus 227 isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 988775 89999999999999999999999999999999999997655 56899999999999988775
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.2e-27 Score=227.85 Aligned_cols=293 Identities=16% Similarity=0.237 Sum_probs=233.6
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccC------------CCc---ceeceeecccccceeEEEEecCCC
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG------------SND---LRQHSQIDAHVGAVNDLAFAYPNK 464 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~------------~~~---~~~~~~~~~h~~~v~~l~fs~d~~ 464 (1128)
..+..|.+++.+.+|||||.++|+|+.|..|+|.|++. |.. -..+.+|-.|...|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34778999999999999999999999999999999871 111 123447789999999999999999
Q ss_pred eEEEEEecCCCeEEEEe-cCCCe--EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee---cCCC
Q 001190 465 LLCVVTCGDDKLIKVWE-LSGRK--LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPG 538 (1128)
Q Consensus 465 ~~~l~s~s~d~~i~vWd-~~g~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~ 538 (1128)
.|++|+.|++|+++| ..... ..+......+|.++.|+| .|.+|+.|....++++||+++.++-..- ..|.
T Consensus 186 --ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 186 --ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred --eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC--CCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 899999999999999 32222 222223456899999998 4579999999999999999988776643 3456
Q ss_pred CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc-ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001190 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 539 ~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 617 (1128)
..|+++.+++.|++.++++ .||.|++||--+++++.++.. |.+..|.+..|..+++++++.|.|..+++|.+.++
T Consensus 262 ~ai~~V~Ys~t~~lYvTaS----kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTAS----KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cceeEEEecCCccEEEEec----cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 6899999999999999998 499999999999999998875 45556888999999999999999999999999999
Q ss_pred eeeEEEecCCCCCC---cceEEEcCCCCEEEEEEc-CCcEEEEEcccCccccccccCCccccccCcceeeeeeccccccc
Q 001190 618 NILTSTDAEGGLPN---LPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1128)
Q Consensus 618 ~~~~~~~~~~~~~~---v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 693 (1128)
+.+....+.+..+. -+...|+....+++.-.. .+.+.-||.++..
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad------------------------------- 386 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD------------------------------- 386 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh-------------------------------
Confidence 99998876543222 134456665555554432 4567777766541
Q ss_pred ccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEe
Q 001190 694 SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 773 (1128)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 773 (1128)
.+.+|. .+|.+.++.+.-+
T Consensus 387 -------------------------------------------r~~l~s------------------lgHn~a~R~i~HS 405 (430)
T KOG0640|consen 387 -------------------------------------------RVALLS------------------LGHNGAVRWIVHS 405 (430)
T ss_pred -------------------------------------------hhhhcc------------------cCCCCCceEEEeC
Confidence 122232 2399999999999
Q ss_pred cCcceEEEeeccceeEeee
Q 001190 774 NSAVGLLALGSNGVQKLWK 792 (1128)
Q Consensus 774 ~~g~~l~~~~~dg~i~lw~ 792 (1128)
|.+..+++++.|-.+++|-
T Consensus 406 P~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 406 PVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCCceeeecccceeeeee
Confidence 9999999999999999994
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=7e-27 Score=240.89 Aligned_cols=296 Identities=17% Similarity=0.246 Sum_probs=229.9
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
|+..|.++++.|.|.++++|+-|..|++||+.....+... .....+. ....|+++.||+.
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~------------------fr~l~P~--E~h~i~sl~ys~T 225 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS------------------FRQLQPC--ETHQINSLQYSVT 225 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchh------------------hhccCcc--cccccceeeecCC
Confidence 8889999999999999999999999999999865431110 0011111 4667999999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEe------------eCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee-e
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTF------------MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-K 908 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~------------~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~ 908 (1128)
|..|++.+ ....+|+|-...+..... ++|...++|.+|+|.....+.+++.||+++|||+...+. +
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 98887776 677999998765554332 478889999999998788899999999999999986432 2
Q ss_pred ecc-----cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCC-CCCccEEEEcCCCCEEEE-E
Q 001190 909 SKL-----KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQVRMLV-V 981 (1128)
Q Consensus 909 ~~l-----~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~s~d~~~l~~-~ 981 (1128)
..+ .+..-+++.++|++||+++|.|+.||.|.+|+..+........ ....|. ...+++|.||+||++|++ +
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~--vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMK--VKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred eEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceE--eeeccCCCCceeEEEeccccchhhhcc
Confidence 222 2334578999999999999999999999999985543333332 233333 258999999999999999 6
Q ss_pred ecCeEEEEecCCccc-ccccccCCCCCCCeEEEEEeeCCCEEEEEe------cCCcEEEEecCCCceEEEeCCCCCCCCc
Q 001190 982 HETQLAIYDASKMER-IRQWTPQDALSAPISCAVYSCNSQLVFATF------CDGNIGVFDADTLRLRCYIAPSTYLSPS 1054 (1128)
Q Consensus 982 ~d~~i~v~d~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1054 (1128)
.|+.+++||++..+. +..+..... ..+-+.++||||.++|++|. ..|.+++||..+.+.+.++.
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t-~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~-------- 454 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPT-PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID-------- 454 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCc-cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec--------
Confidence 799999999997654 444444332 66778999999999999986 36789999999999999998
Q ss_pred ccCCCCccceEEEEEecCCCCEEEEEECCCcEEEE-cCCCC
Q 001190 1055 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM-EPSES 1094 (1128)
Q Consensus 1055 ~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iW-d~~~~ 1094 (1128)
-....|..+.|+| .-+.|++|+.||+++++ |....
T Consensus 455 ----i~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 455 ----ISTASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred ----CCCceEEEEeecc-hhhheeeecCCCceEEEECcccc
Confidence 2345678899999 58889999999998765 55443
No 86
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.6e-26 Score=230.03 Aligned_cols=283 Identities=19% Similarity=0.315 Sum_probs=234.0
Q ss_pred ccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCC-CccEEEEEeccCcEEEEecCC
Q 001190 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDT 527 (1128)
Q Consensus 449 ~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~ 527 (1128)
.|.+.|.++.-. ++ .++||+.||++++||..|+.+..+.||.++|.++++.... ....+++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 588899999887 55 7999999999999999999999999999999988875432 234699999999999998877
Q ss_pred CCcee----eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC-------------------------CCceee
Q 001190 528 MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-------------------------EGTIKR 578 (1128)
Q Consensus 528 ~~~~~----~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~-------------------------~~~~~~ 578 (1128)
+.... ...+|...|.++...++|.++++++. |..|.+|+.. ++.++.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 65543 34488889999999999999999996 9999999932 134566
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
++.||.+ .|..+.|++ ...+++++.|.+|+.||+.++..+..+.... .++++..+|..++|++|+.|..+++||.
T Consensus 255 tl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred Eeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCC
Confidence 7888987 899999987 6789999999999999999999988886543 5899999999999999999999999997
Q ss_pred ccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCC
Q 001190 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKP 738 (1128)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 738 (1128)
+++.. +
T Consensus 330 R~~~g--------------------------s------------------------------------------------ 335 (423)
T KOG0313|consen 330 RTGDG--------------------------S------------------------------------------------ 335 (423)
T ss_pred CCCCC--------------------------c------------------------------------------------
Confidence 66410 0
Q ss_pred CcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCC
Q 001190 739 KPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 818 (1128)
Q Consensus 739 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1128)
+...
T Consensus 336 ----------------------------~v~~------------------------------------------------ 339 (423)
T KOG0313|consen 336 ----------------------------VVSQ------------------------------------------------ 339 (423)
T ss_pred ----------------------------eeEE------------------------------------------------
Confidence 0000
Q ss_pred ccccccccCCCCCCCeeEEEeccCCC-eEEEEe-CCeEEEEECCCce-EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001190 819 LLMANDVAGVNLEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1128)
Q Consensus 819 ~~~~~~~~~~~~~~~v~~~~~s~dg~-~la~~~-dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg 895 (1128)
.+. +|...|.++.++|... .|++++ |+++++||+++.+ .+..+.+|...|.++.|. ++.++++|+.|.
T Consensus 340 -----s~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 340 -----SLI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADN 410 (423)
T ss_pred -----eee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcc
Confidence 011 1777788888888654 456666 9999999999887 889999999999999998 577999999999
Q ss_pred cEEEEecc
Q 001190 896 TIHIYNVR 903 (1128)
Q Consensus 896 ~v~iwd~~ 903 (1128)
+|+|+...
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 99998643
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-26 Score=248.64 Aligned_cols=295 Identities=18% Similarity=0.312 Sum_probs=244.2
Q ss_pred CCCCccccccCCCCCCC--CCCcccCCCChHHHhhhcCCCCCCCcccccCCCcc--cccCCCCCcceEEeecCCCcEEEE
Q 001190 275 VPQNQVSVLKHPRTPPT--PGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQ--TWSLDDLPRTVAVSLHQGSTVISM 350 (1128)
Q Consensus 275 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~V~~v 350 (1128)
.+.....||+.|.-..+ ...+||... .+...+-+.. +|+....+......++ ++.|+++
T Consensus 161 ~~~~p~rvLDaP~l~dDfY~nlldWss~----------------n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv 223 (484)
T KOG0305|consen 161 IPQTPYRVLDAPGLQDDFYLNLLDWSSA----------------NVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSV 223 (484)
T ss_pred ccCChhhhccCCcccccHhhhHhhcccC----------------CeEEEEecceEEEEecCCCceEEeEecC-CCceEEE
Confidence 44555567776664333 666777622 2333333333 8887776655555555 8999999
Q ss_pred EEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccC-CCcceEEEEEccCCCEEEEEeCCCe
Q 001190 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD-VPISVSRVAWSPDGNYVGVAFTKHL 429 (1128)
Q Consensus 351 ~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~las~~~d~~ 429 (1128)
.|+++|+ +||+|..+|.|.|||..+.+.+.. +.+ |...|.+++|+ +..+.+|+.|+.
T Consensus 224 ~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~~rvg~laW~--~~~lssGsr~~~ 281 (484)
T KOG0305|consen 224 KWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHASRVGSLAWN--SSVLSSGSRDGK 281 (484)
T ss_pred EECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCCcCceeEEEecc--CceEEEecCCCc
Confidence 9999999 789999999999999988776653 556 99999999998 778999999999
Q ss_pred EEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCc
Q 001190 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI 508 (1128)
Q Consensus 430 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~ 508 (1128)
|..+|+...+..-. ++.+|...|..+.|++|+. ++++|+.|+.+.||| ....++..+..|.+.|.+++|+|-..
T Consensus 282 I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~- 356 (484)
T KOG0305|consen 282 ILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS- 356 (484)
T ss_pred EEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc-
Confidence 99999998876544 4789999999999999999 899999999999999 78888999999999999999999765
Q ss_pred cEEEEEe--ccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCC
Q 001190 509 QFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586 (1128)
Q Consensus 509 ~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 586 (1128)
.+||+|+ .|+.|++||..++....... .+..|.++.|++..+-|+++.. ..+..|.||+..+.+.+..+.+|..
T Consensus 357 ~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG--~s~n~i~lw~~ps~~~~~~l~gH~~- 432 (484)
T KOG0305|consen 357 GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG--YSENQITLWKYPSMKLVAELLGHTS- 432 (484)
T ss_pred CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--CCCCcEEEEeccccceeeeecCCcc-
Confidence 5888874 79999999998766555444 4567999999999987776653 2466899999999999999999998
Q ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001190 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 587 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 617 (1128)
.|..++++|||..+++|+.|.++++|++-+.
T Consensus 433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 7999999999999999999999999998765
No 88
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5e-26 Score=221.08 Aligned_cols=240 Identities=20% Similarity=0.260 Sum_probs=211.6
Q ss_pred CCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCC--EEEEEeCCCcEEEEecccc
Q 001190 829 NLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGTEDSTIHIYNVRVD 905 (1128)
Q Consensus 829 ~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~--~lasg~~dg~v~iwd~~~~ 905 (1128)
.|...++++|. +|.++|+|+ |.+|+|||+...+.+..+-.|.+.|+++.|.+ +.. .|.+|+.||.|.+|+....
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 49999999998 789999998 89999999999999999999999999999998 554 7899999999999999999
Q ss_pred eeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCe
Q 001190 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQ 985 (1128)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~ 985 (1128)
+++..+++|.+.|+.++++|.|++-++.+.|+.+++||+-.|+.-....+. ...+.|.|+|.|.+++++....
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-------~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-------NKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-------CcceeeEEcCCCCEEEEEeccE
Confidence 999999999999999999999999999999999999999998865555554 4455699999999999999999
Q ss_pred EEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceE
Q 001190 986 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPL 1065 (1128)
Q Consensus 986 i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1128)
|-+|.+.+......+.. ...+.++.|- ++.+|++|++|+.|.+||..++...+.+. +|..+|.
T Consensus 191 i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~------------AH~~RVK 253 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIEN----PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL------------AHENRVK 253 (362)
T ss_pred EEEEecccHhHhhhhhc----cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee------------cchhhee
Confidence 99999999888777765 4567777775 56789999999999999999988888887 6777788
Q ss_pred EEE-EecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1066 VVA-AHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1066 ~~~-~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
++. |...++.+|+++|.||.|++||+....
T Consensus 254 ~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 254 DIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 887 333357899999999999999998764
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=239.22 Aligned_cols=286 Identities=14% Similarity=0.253 Sum_probs=235.6
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
..+.|.+++|+|...+=++....-.+.+|+.. +..... .+.. ....+.+++|-.|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~----------------------~~~~~k-~~sr--Fk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSV----------------------TRSVRK-TFSR--FKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecc----------------------hhhhhh-hHHh--hccceeEEEeecC
Confidence 56789999999977655555555566666532 222111 1111 6788999999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEE
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 921 (1128)
|+++|.|+ .|.|+|||+.+...++.+.+|..++..+.|+|+++..+++|+.|+.+++||+.+......+.+|++.|.+.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999998 79999999887777889999999999999999999999999999999999999998877899999999999
Q ss_pred EEcCCC-CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCccccccc
Q 001190 922 AFSTSL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 1000 (1128)
Q Consensus 922 ~~s~d~-~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~ 1000 (1128)
+|+|-. .+++|||.||.|++||+.... ... .. . ..+.+|..+.|-|.|..+++++...++|||+.+|......
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v--~e-l--nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT-SRV--VE-L--NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC-cee--EE-e--cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence 999964 489999999999999998753 111 11 1 1227899999999999999999999999999977765544
Q ss_pred ccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEE
Q 001190 1001 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1080 (1128)
Q Consensus 1001 ~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~ 1080 (1128)
... |...|+|+.+..|+..|++|+-|+.|+|||+.+.+.+..+. -++.+++++.+| ++..++.|
T Consensus 234 ~~~--H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-------------~~~pvLsiavs~-dd~t~viG 297 (487)
T KOG0310|consen 234 MFN--HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-------------YPGPVLSIAVSP-DDQTVVIG 297 (487)
T ss_pred hhc--ccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-------------cccceeeEEecC-CCceEEEe
Confidence 432 48999999999999999999999999999999988888877 224568999999 68899999
Q ss_pred ECCCcEEEEcCCCCC
Q 001190 1081 LTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1081 ~~dg~i~iWd~~~~~ 1095 (1128)
..||.+-+=+....+
T Consensus 298 msnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 298 MSNGLVSIRRREVKK 312 (487)
T ss_pred cccceeeeehhhccc
Confidence 999999887666655
No 90
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-26 Score=218.70 Aligned_cols=283 Identities=17% Similarity=0.246 Sum_probs=226.0
Q ss_pred EEEEEeCC--CCcEEEEee-----ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-CC
Q 001190 348 ISMDFHPS--HQTLLLVGS-----SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GN 419 (1128)
Q Consensus 348 ~~v~fspd--g~~lla~gs-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~ 419 (1128)
.++.|||- ++..+|++. ..|.+.|-++..++.+.. ++ --.-.+.+..++||++ ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence 57889994 553344442 257899999875544421 11 1124568999999995 55
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeE
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~ 498 (1128)
.+++++.||++++||.. ..-.++..++.|...|.++.|++-.++ .++++|.|++|++|+ ..++.++++.||...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~--~~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLT--MPSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccC--CCCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 77888999999999954 333455578899999999999997666 677779999999999 88899999999999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEE-EeeeccCCCceEEEEeCCCC-ce
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF-SCGTSKDGDSFLVEWNESEG-TI 576 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~~~~~~~~~~i~~wd~~~~-~~ 576 (1128)
..+|+|. ....+++++.|+++++||++..+....+..|...|.++.|+.-...++ +++ .|+.|++||++.- .+
T Consensus 152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhcccc
Confidence 9999987 457999999999999999999988888999999999999998665554 554 5999999999875 46
Q ss_pred eeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCe-eeEEEecCCCCCCcceEEEcC-CCCEEEEEEcCCcE
Q 001190 577 KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGF 653 (1128)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i 653 (1128)
+..+.+|.- .|..+.|+|.. ..|++++.|-+++|||...+. .+.+...| ..-+..+.||+ ++.++|+.+-|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccce
Confidence 778888776 89999999965 578889999999999998543 44444444 33678889988 77899999999999
Q ss_pred EEEEc
Q 001190 654 KILAN 658 (1128)
Q Consensus 654 ~iw~~ 658 (1128)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99974
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-25 Score=217.24 Aligned_cols=281 Identities=15% Similarity=0.234 Sum_probs=230.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
....|+++.|+++|. ++++++.|.+++|||..+|+++.. +..+...|..++|......++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 467899999999999 567788999999999999998754 555777899999988777777
Q ss_pred EEeC--CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEE
Q 001190 423 VAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 423 s~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~ 499 (1128)
.++. |.+|+.-++.+.+.++ .|.||...|++++.+|-+. .++|++.|++|++|| ...++...+.....+|
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7766 8899999999998887 5889999999999999998 899999999999999 6666666665444444
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCc--eeeecC---CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~---~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
++|.| .|-++|++...+.|++||++.... -.++.. .....+.+.|||||++++.+.. .+.+++.|.-+|
T Consensus 146 ~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 45544 677888888878999999987532 223332 3557899999999999998874 888999999999
Q ss_pred ceeeEeccccCCc--eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCc
Q 001190 575 TIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1128)
Q Consensus 575 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~ 652 (1128)
..+.++.++.... -...+|+||++++++|+.||+|.+|+++++..+..+... ...++.++.|+|.-.+++++ +..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa--~s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA--SSN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeec--Cce
Confidence 9999999887633 245789999999999999999999999999999998874 34578999999986666665 457
Q ss_pred EEEEEcc
Q 001190 653 FKILANA 659 (1128)
Q Consensus 653 i~iw~~~ 659 (1128)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7788554
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.1e-26 Score=236.19 Aligned_cols=302 Identities=18% Similarity=0.259 Sum_probs=232.6
Q ss_pred CCcceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE
Q 001190 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
.|....+.+. |...|.++++.|.|- -+++||.|.+|++||+.....-. ..|+. +.......|.+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~-~~fr~-------------l~P~E~h~i~s 219 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASM-RSFRQ-------------LQPCETHQINS 219 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccc-hhhhc-------------cCcccccccce
Confidence 3444555555 788899999999999 46999999999999997644322 11221 23334568999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcc---------eeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDL---------RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~---------~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd- 481 (1128)
++||+.|..|++.+....++|+|.+.-+.+ +-...-.||...+++.+|.|+.+. .++|++.||++++||
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv 298 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDV 298 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEec
Confidence 999999999999998889999998754332 223345699999999999999887 799999999999999
Q ss_pred c-CCCeEEEec-----CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee---eecCCCC--eEEEEEEcCCC
Q 001190 482 L-SGRKLFNFE-----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGH--WCTTMLYSADG 550 (1128)
Q Consensus 482 ~-~g~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~--~i~~~~~s~~g 550 (1128)
. ..+.+..+. +..-+++.++|++ ++..|++|+.||.|.+|+........ .-..|.. .|+|++||+||
T Consensus 299 ~~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 299 NNTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred CCchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 3 333333332 2334678888866 77899999999999999975543322 2334444 89999999999
Q ss_pred CeEEEeeeccCCCceEEEEeCCCCc-eeeEeccccC-CceeEEEEeCCCCEEEEEE------CCCcEEEEECCCCeeeEE
Q 001190 551 SRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRK-KSNGVVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTS 622 (1128)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s------~dg~i~iwd~~~~~~~~~ 622 (1128)
++|++-+ .|..+++||++..+ ++....+... ..-+.++|+|+.+.|++|+ ..|.+++||..+.+.++.
T Consensus 377 ~~LlSRg----~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 377 NYLLSRG----FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred chhhhcc----CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 9999987 49999999998754 5555554332 2345689999999999986 467899999999999999
Q ss_pred EecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
+..... .|..+.|+|.-+.|.+|+.||++++|--
T Consensus 453 i~i~~a--Svv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 453 IDISTA--SVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred ecCCCc--eEEEEeecchhhheeeecCCCceEEEEC
Confidence 887643 6889999999999999999999998743
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.7e-26 Score=232.67 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=232.1
Q ss_pred eecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccc---cc-cCccccceeccCCCcceEEEEEc
Q 001190 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM---AA-CSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
.-.|.-.|.||+++||++ +..+++.+++|.=|++.+|+.... +|.. .. -..+.+... ++|...|.+++.|
T Consensus 138 ~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS 211 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVS 211 (479)
T ss_pred eccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEc
Confidence 335999999999999999 678999999999999999985521 1111 00 112222222 4899999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCC
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~ 494 (1128)
|||+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+ .....+.++.||+
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 999999999999999999999998877 5889999999999987777 699999999999999 7777788999999
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
+.|.++.... -++.+-+|+.|+++++|++ ....+..+.++.+.+-|++|-.+. .+++|+. +|.|.+|++.+.
T Consensus 287 d~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~~KK 358 (479)
T KOG0299|consen 287 DGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSLLKK 358 (479)
T ss_pred cceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeeeccc
Confidence 9999997654 3356666679999999999 556677788888899999996654 5677763 999999999999
Q ss_pred ceeeEeccccC-----------CceeEEEEeCCCCEEEEEECCCcEEEEECCCC----eeeEEEecCCCCCCcceEEEcC
Q 001190 575 TIKRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 575 ~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~sp 639 (1128)
+++.+....++ .-+++++..|..+.+++|+.+|.|++|-++.+ +++..+... +-|++++|++
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~f~~ 435 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLAFSN 435 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEEEcc
Confidence 98887664332 14677889999999999999999999999887 445555443 3689999999
Q ss_pred CCCEEEEEE
Q 001190 640 EGNLLAVTT 648 (1128)
Q Consensus 640 ~~~~l~~~~ 648 (1128)
+|+.+++|.
T Consensus 436 sgk~ivagi 444 (479)
T KOG0299|consen 436 SGKRIVAGI 444 (479)
T ss_pred CCCEEEEec
Confidence 999766663
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=244.45 Aligned_cols=292 Identities=21% Similarity=0.275 Sum_probs=239.1
Q ss_pred CCCcEE---EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001190 343 QGSTVI---SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1128)
Q Consensus 343 h~~~V~---~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1128)
|...|. ++..++.+.++|.||+.||.|++|++..-..... .+ ....+..|.+.|..++..-+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCCC
Confidence 444555 5666655555889999999999999865443211 11 1223778999999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEE-ecCCCeEEEEEecCCCeEEEEe-cCC--CeE--------
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-AYPNKLLCVVTCGDDKLIKVWE-LSG--RKL-------- 487 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~f-s~d~~~~~l~s~s~d~~i~vWd-~~g--~~~-------- 487 (1128)
.|++++.|-+|++|+...+. .-...++..|...|.|+++ .++.. ++||||-|+.|.+|| .+| ..+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998874 1222367889999999999 66666 899999999999999 655 222
Q ss_pred EEec-CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceE
Q 001190 488 FNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1128)
Q Consensus 488 ~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i 566 (1128)
..+. |+...|++++..+ +|..+++|+..+.+++||-++.+....+.+|...|..+..++||..+++++. |++|
T Consensus 164 ~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI 237 (735)
T ss_pred ccCCCCCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence 2333 8889999999855 6689999999999999999999999999999999999999999999999985 9999
Q ss_pred EEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEE
Q 001190 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1128)
Q Consensus 567 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 646 (1128)
++||+...+++.++..|.. .++++..+|+-.++++|+.||.|+.=|+.+......+-... .+|..+..+.+.+-+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSVWV 314 (735)
T ss_pred EeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCcee
Confidence 9999999999999999998 69999999999999999999999999998854333333222 26788888766566688
Q ss_pred EEcCCcEEEEEcc
Q 001190 647 TTADNGFKILANA 659 (1128)
Q Consensus 647 ~~~dg~i~iw~~~ 659 (1128)
++.|+.|+-|...
T Consensus 315 tTtds~I~rW~~~ 327 (735)
T KOG0308|consen 315 TTTDSSIKRWKLE 327 (735)
T ss_pred eeccccceecCCc
Confidence 8889999999654
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=4.9e-27 Score=236.13 Aligned_cols=284 Identities=17% Similarity=0.257 Sum_probs=237.3
Q ss_pred CCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc
Q 001190 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 762 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1128)
.|.+.+..+.|-++...|++++.|..|++|++..... .....+.+ ..+.|+.+.|.+
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------~~~~tLaG--s~g~it~~d~d~ 229 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------ELISTLAG--SLGNITSIDFDS 229 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------------hhhhhhhc--cCCCcceeeecC
Confidence 3889999999999999999999999999998653221 11122333 677899999999
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
+++++++++ |+.+++|++...+...++.+|.+.|+++.|.. +...+++|+.|.+|++||+....+.+++-. ...+..
T Consensus 230 ~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnD 307 (459)
T KOG0288|consen 230 DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCND 307 (459)
T ss_pred CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc-cccccc
Confidence 999988887 89999999999999999999999999999998 555599999999999999999988877652 344566
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccc
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQ 999 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~ 999 (1128)
+..+ ...++|+-.|+.|++||+.+..+....+.. +.++++..+++|..+++++ |..+.+.|+++.+....
T Consensus 308 I~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 308 IVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT 378 (459)
T ss_pred eEec--ceeeeecccccceEEEeccCCceeeEeecC-------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEE
Confidence 6665 567889999999999999998877666655 7899999999999988865 99999999998887766
Q ss_pred cccCCC-CCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 1000 WTPQDA-LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 1000 ~~~~~~-h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
+..... .....+.+.||||+.|+++|+.||.|+||++.++++...+.... .+ ..+++++|+| .|..++
T Consensus 379 ~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~---------s~-~aI~s~~W~~-sG~~Ll 447 (459)
T KOG0288|consen 379 FSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST---------SN-AAITSLSWNP-SGSGLL 447 (459)
T ss_pred eeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC---------CC-cceEEEEEcC-CCchhh
Confidence 654321 14558999999999999999999999999999999988887321 22 2579999999 599999
Q ss_pred EEECCCcEEEEc
Q 001190 1079 IGLTDGSVKVME 1090 (1128)
Q Consensus 1079 s~~~dg~i~iWd 1090 (1128)
+++.++.+++|.
T Consensus 448 sadk~~~v~lW~ 459 (459)
T KOG0288|consen 448 SADKQKAVTLWT 459 (459)
T ss_pred cccCCcceEecC
Confidence 999999999994
No 96
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.3e-25 Score=212.30 Aligned_cols=275 Identities=12% Similarity=0.205 Sum_probs=231.3
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCCEEEEEEcCCcEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKIL 656 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~iw 656 (1128)
+.+++|.. .+.+++|.-+|..+++|+.|+++.+|+++..+........++...|-.++|+| ...++++++.|.+|++|
T Consensus 14 r~~~~~~~-~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQ-KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhh-cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 45566665 78999999999999999999999999999998888887778877899999998 56789999999999999
Q ss_pred EcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCC
Q 001190 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTD 736 (1128)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 736 (1128)
|.+.++...+..
T Consensus 93 d~r~~k~~~~i~-------------------------------------------------------------------- 104 (313)
T KOG1407|consen 93 DIRSGKCTARIE-------------------------------------------------------------------- 104 (313)
T ss_pred EeccCcEEEEee--------------------------------------------------------------------
Confidence 998774322110
Q ss_pred CCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccC
Q 001190 737 KPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (1128)
Q Consensus 737 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1128)
..+.-.-+.|+|+|.++++++.|..|.+.|.....
T Consensus 105 --------------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~------------------- 139 (313)
T KOG1407|consen 105 --------------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYK------------------- 139 (313)
T ss_pred --------------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccc-------------------
Confidence 11222457899999999999999888887654321
Q ss_pred CCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001190 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1128)
Q Consensus 817 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg 895 (1128)
.+. .......+..++|+.++.++.... .|+|.|......+++.++++|+....|+.|+| +|+++|+|+.|-
T Consensus 140 ---~~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADA 211 (313)
T KOG1407|consen 140 ---IVN----EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADA 211 (313)
T ss_pred ---eee----hhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccc
Confidence 111 011456678889988777766555 69999999999999999999999999999999 999999999999
Q ss_pred cEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCC
Q 001190 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 975 (1128)
Q Consensus 896 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 975 (1128)
.+.+||++.--+++.+..+.-+|..+.||.||++||++++|..|-|=++++|..+..++.. ++...|+|+|..
T Consensus 212 lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~-------~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 212 LVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE-------GPTFTVAWHPKR 284 (313)
T ss_pred eeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc-------CCceeEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999987766655 778899999999
Q ss_pred CEEEEE
Q 001190 976 VRMLVV 981 (1128)
Q Consensus 976 ~~l~~~ 981 (1128)
.+|+.+
T Consensus 285 ~LLAyA 290 (313)
T KOG1407|consen 285 PLLAYA 290 (313)
T ss_pred ceeeEE
Confidence 999874
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.4e-26 Score=231.20 Aligned_cols=283 Identities=20% Similarity=0.237 Sum_probs=237.0
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceec--------------eee-cccccceeEEEEecCCCeE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH--------------SQI-DAHVGAVNDLAFAYPNKLL 466 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~--------------~~~-~~h~~~v~~l~fs~d~~~~ 466 (1128)
...|.-+|.|++++||+++.++++.+++|.=|++.+|+..+.+ ..- .+|...|.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5669999999999999999999999999999999988743110 011 27889999999999999
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 545 (1128)
+|++|+.|..|.||+ .+.+.++.+.+|.+.|.+++|-.. ...+++++.|+.|++|+++......++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecC--ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 899999999999999 999999999999999999999654 36799999999999999999988889999999999999
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
....++.+-+++. |.++++|++.. .....|.++.. .+.|++|-. ..++++|+.+|.|.+|++...+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888877777664 99999999943 34455666655 788888864 46899999999999999999988877643
Q ss_pred CCC----------CCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeeccccccccc
Q 001190 626 EGG----------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1128)
Q Consensus 626 ~~~----------~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 695 (1128)
..+ ...|++++..|...++++|+.+|.|++|-+..+.+.+..+.... ..+.|++++|+++|+.++++
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEccCCCEEEEe
Confidence 221 11578999999999999999999999999999866555554433 45679999999999988776
Q ss_pred CCC
Q 001190 696 GTP 698 (1128)
Q Consensus 696 ~~~ 698 (1128)
.+.
T Consensus 444 iGk 446 (479)
T KOG0299|consen 444 IGK 446 (479)
T ss_pred ccc
Confidence 543
No 98
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-25 Score=241.83 Aligned_cols=277 Identities=15% Similarity=0.226 Sum_probs=235.2
Q ss_pred EEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC
Q 001190 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1128)
Q Consensus 348 ~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 427 (1128)
+-+.||..+ .||+| ....|.+|+..++..... ..-+...|+++.|+++|.+||+|..+
T Consensus 181 nlldWss~n--~laVa-lg~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVA-LGQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEE-ecceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 346677554 67776 456899999999885431 22247899999999999999999999
Q ss_pred CeEEEEEccCCCcceeceeecc-cccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE-ecCCCCCeEEEeccC
Q 001190 428 HLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN-FEGHEAPVYSICPHH 504 (1128)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~-~~~h~~~v~~~~~~~ 504 (1128)
|.|.|||..+.+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+| ...+.... +.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999887766 4666 99999999998 44 799999999999999 55554444 899999999999976
Q ss_pred CCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC-CCeEEEeeeccCCCceEEEEeCCCCceeeEeccc
Q 001190 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1128)
Q Consensus 505 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1128)
|+.++++|+.|+.+.|||.........+..|...|.+++|+|- ...||+|+. ..|+.|++||+.+++.+......
T Consensus 312 --d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 312 --DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred --CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccC
Confidence 7789999999999999999888899999999999999999995 456666654 46999999999999998887765
Q ss_pred cCCceeEEEEeCCCCEEEEE--ECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 584 RKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
. .|..+.|++..+.|+++ ..++.|.||+..+.+.+..+.+| ...|..++++|||..+++|+.|.++++|++-+.
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4 59999999998888774 46789999999998888888755 458999999999999999999999999998764
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-24 Score=199.09 Aligned_cols=306 Identities=15% Similarity=0.183 Sum_probs=231.9
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
.+..|.+++|.|.|...++++...++++..++.-.....+...+. .+ ..++...- ..|.+.|.|.+|||+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~-~p-------p~v~~kr~--khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAK-QP-------PSVLCKRN--KHHKGSIYCTAWSPC 100 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCccccccccc-CC-------CeEEeeec--cccCccEEEEEecCc
Confidence 567899999999999999999999999876542111000000000 00 00111111 138899999999999
Q ss_pred CCeEEEEe-CCeEEEEECCC--ceE---EEEeeCCCCCeeEEEEcC---CCCCEEEEEe-CCCcEEEEecccceeeeccc
Q 001190 843 DSYVMSAT-GGKISLFNMMT--FKV---MTTFMSPPPASTFLAFHP---QDNNIIAIGT-EDSTIHIYNVRVDEVKSKLK 912 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~--~~~---~~~~~~~~~~v~~l~~s~---~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~ 912 (1128)
|+++++|+ |.+|++...+. ... -.++.-|.+.|..++|.. .++.+|++++ .|..|++-|..+|+....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999 78888875543 322 235667999999999965 2467888766 57789999999999999999
Q ss_pred ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCC-CCCCccEEEEcCCCCEEEEEe-cCeEEEEe
Q 001190 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGK-TPTGDTRVQFNADQVRMLVVH-ETQLAIYD 990 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d 990 (1128)
+|++.|.++ ++-+|-++++|+.|.+|++||+.-..+..........+. ..+.|..++..|.|++|+++. |..-.+||
T Consensus 181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 999999877 344688999999999999999987666554433322222 237899999999999999996 88999999
Q ss_pred cCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEe
Q 001190 991 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAH 1070 (1128)
Q Consensus 991 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1128)
++.++.+..+.+| ...|.++.|||.-.|+++++.|..|++-|+.. .+... ++..+++ .|...+..+.|+
T Consensus 260 irg~r~iq~f~ph---sadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~e------l~~~vv~-ehkdk~i~~rwh 328 (350)
T KOG0641|consen 260 IRGGRMIQRFHPH---SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHE------LPIMVVA-EHKDKAIQCRWH 328 (350)
T ss_pred eeCCceeeeeCCC---ccceeEEEeCCCceEEEEecccceEEEeeccc-chhhc------CceEEEE-eccCceEEEEec
Confidence 9999999998876 89999999999999999999999999999863 22221 1222222 455666889999
Q ss_pred cCCCCEEEEEECCCcEEEEcC
Q 001190 1071 PLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1071 p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
|+ ..-|++.+.|.++.+|-+
T Consensus 329 ~~-d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 329 PQ-DFSFISSSADKTATLWAL 348 (350)
T ss_pred Cc-cceeeeccCcceEEEecc
Confidence 96 677999999999999965
No 100
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.7e-25 Score=239.53 Aligned_cols=283 Identities=16% Similarity=0.302 Sum_probs=239.3
Q ss_pred ceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE-EE
Q 001190 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VA 413 (1128)
Q Consensus 336 ~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~ 413 (1128)
.+.+.++ |++.|..+++.+.. .+++||.||++++|+-..++.+. .+.+.+|.+.|.+ ++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~-----------------~~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLE-----------------THAFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCccccc-----------------ceecccCcceeeccce
Confidence 3445554 99999999999887 46889999999999976665543 2347778888888 88
Q ss_pred Ecc-CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecC
Q 001190 414 WSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG 492 (1128)
Q Consensus 414 ~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~ 492 (1128)
+-+ ++-.|++|+.|++|.+|...+.+++. +|.+|...|.++....++. ++|||.|.++++|- .|++...+.+
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~-~~~l~~~l~g 138 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR-IGELVYSLQG 138 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec-chhhhcccCC
Confidence 886 55569999999999999999988776 6899999999999888875 89999999999998 5666777999
Q ss_pred CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC
Q 001190 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
|+..|++++..+.. .++||+.|.+|++|. .++...++.+|...|+.+++-+++.++ +++ +|+.|++|++
T Consensus 139 H~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~fl-Scs----NDg~Ir~w~~- 207 (745)
T KOG0301|consen 139 HTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFL-SCS----NDGSIRLWDL- 207 (745)
T ss_pred cchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeE-eec----CCceEEEEec-
Confidence 99999999986642 899999999999994 467788899999999999999887655 454 4999999999
Q ss_pred CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCc
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~ 652 (1128)
+|..+.++.+|.. .+.++....++..++++++|++++||+.. ++.+.+..++. .|+++.+-++|. +++|+.||.
T Consensus 208 ~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~ 281 (745)
T KOG0301|consen 208 DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGR 281 (745)
T ss_pred cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCce
Confidence 8999999999998 89999988888999999999999999976 77777776654 588888888875 678888999
Q ss_pred EEEEEcccC
Q 001190 653 FKILANAIG 661 (1128)
Q Consensus 653 i~iw~~~~~ 661 (1128)
|+||.....
T Consensus 282 VrVfT~~k~ 290 (745)
T KOG0301|consen 282 VRVFTVDKD 290 (745)
T ss_pred EEEEEeccc
Confidence 999987643
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=3.9e-25 Score=223.68 Aligned_cols=283 Identities=17% Similarity=0.203 Sum_probs=246.5
Q ss_pred CcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
..++++...|... .+.||+.|..+.++|...++.+.. ++||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 3688999998844 689999999999999998887653 99999999999999999999999
Q ss_pred eCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecC--CCCCeEEEe
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG--HEAPVYSIC 501 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~--h~~~v~~~~ 501 (1128)
+.|..|+||......... ....|.++|+.+...|.|. ||++++.|++..+.| .+|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766444 4678999999999999999 899999999999999 88988766653 234589999
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1128)
||| ||-++.+|..||.|++||+........+.+|.++|.+++|+.+|-+|++++. |+.|++||++..+...++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 988 7789999999999999999999988899999999999999999999999984 7889999999999888888
Q ss_pred cccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
......+..+.|.+.|.+|+.++.|=.|++++..+.+.......+.+.+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 87766799999999999999999888888888666554444444444557889999999999999999999888753
No 102
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.4e-24 Score=245.63 Aligned_cols=255 Identities=11% Similarity=0.125 Sum_probs=193.6
Q ss_pred eeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-CCEEEEEeCCCeEEEEEccCCCc-
Q 001190 363 GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSND- 440 (1128)
Q Consensus 363 gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~vwd~~~~~~- 440 (1128)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v-------------------~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV-------------------IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceE-------------------EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 455677777776544332 248899999999999997 79999999999999999986432
Q ss_pred c----eeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe
Q 001190 441 L----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1128)
Q Consensus 441 ~----~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 515 (1128)
. .....+.+|...|.+++|+|++.. +|++++.|++|++|| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 112247799999999999999874 568999999999999 7787777775 667899999977 678999999
Q ss_pred ccCcEEEEecCCCCceeeecCCCCeEEE-----EEEcCCCCeEEEeeeccCCCceEEEEeCCC-CceeeEeccccCCc-e
Q 001190 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTT-----MLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKS-N 588 (1128)
Q Consensus 516 ~dg~i~~wd~~~~~~~~~~~~~~~~i~~-----~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~-v 588 (1128)
.|+.|++||++++.....+..|.+.+.+ ..|++++.++++++.++..++.|++||++. ++++..+..+.... +
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999998888888888764432 345689999999886544456899999995 55666554433212 2
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCC
Q 001190 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1128)
Q Consensus 589 ~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 641 (1128)
......+++.++++|+.|+.|++|++..+.. ..+....+..++.+++|.|+.
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 2233345578888999999999999987753 333333344578899999964
No 103
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=247.33 Aligned_cols=273 Identities=15% Similarity=0.237 Sum_probs=213.0
Q ss_pred CCcccEEEEEEecCcceEEEeeccceeEeeeccccCC---------------CCCC----------ceeeee--------
Q 001190 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ---------------NPSG----------KATASA-------- 808 (1128)
Q Consensus 762 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~---------------~~~~----------~~~~~~-------- 808 (1128)
.|.+.|.++-|++||+||+++|.||.|+||.+...+. ...+ +.....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4999999999999999999999999999999887211 0000 000000
Q ss_pred -ccceeccCCCcccc---ccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCC
Q 001190 809 -VPQHWLPSSGLLMA---NDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883 (1128)
Q Consensus 809 -~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~ 883 (1128)
.-.+.......... ..+.| |...|..+.||.++ +|++++ |.+|++|++...++++.|. |..-|+|++|+|-
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~G--Ht~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKG--HTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhc--cchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence 00011111111111 12334 99999999999876 555666 9999999999999999997 9999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCC-
Q 001190 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT- 962 (1128)
Q Consensus 884 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~- 962 (1128)
|.+|+++|+-||.|+||++...+.+.-...+ .-|++++|.|||++.+.|+.+|.+++|+....+......+.......
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 9999999999999999999998877666555 88999999999999999999999999999987766665555433221
Q ss_pred -CCCccEEEEcCCCC--EEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCC
Q 001190 963 -PTGDTRVQFNADQV--RMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1039 (1128)
Q Consensus 963 -~~~v~~v~~s~d~~--~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~ 1039 (1128)
...|+.+.|.|... .|+++.|..|+|||..+...+..+.+... ...=....|+.||++|+++++|..|+||++...
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 14699999987543 77777899999999999999999887665 344457789999999999999999999998554
Q ss_pred c
Q 001190 1040 R 1040 (1128)
Q Consensus 1040 ~ 1040 (1128)
.
T Consensus 579 ~ 579 (712)
T KOG0283|consen 579 N 579 (712)
T ss_pred c
Confidence 4
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.6e-26 Score=241.17 Aligned_cols=241 Identities=17% Similarity=0.244 Sum_probs=205.2
Q ss_pred EEEEc-cCCCEEEEEeCCCeEEEEEccCCCcc--e-eceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-
Q 001190 411 RVAWS-PDGNYVGVAFTKHLIQLYSYAGSNDL--R-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG- 484 (1128)
Q Consensus 411 ~l~~s-pdg~~las~~~d~~i~vwd~~~~~~~--~-~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g- 484 (1128)
.+..+ |.++||.+||.||.|++|++..-... . ....++.|.+.|++++...+|+ .|+|+|.|-+|++|+ ..+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 34444 46788999999999999998643221 1 1335789999999999999998 799999999999999 555
Q ss_pred -CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee----------eec-CCCCeEEEEEEcCCCCe
Q 001190 485 -RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYD-APGHWCTTMLYSADGSR 552 (1128)
Q Consensus 485 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----------~~~-~~~~~i~~~~~s~~g~~ 552 (1128)
-+..++..|.+.|.|+++. ..+...+++|+.|+.|.+||+.++.... .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 5778899999999999984 3356799999999999999998764311 122 45568999999999988
Q ss_pred EEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCc
Q 001190 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
+++|+. ++.+++||.++++.+..++||.+ .|.++..+.||.+++++|.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888875 88899999999999999999998 899999999999999999999999999999999999887765 59
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999988777653
No 105
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.2e-24 Score=246.16 Aligned_cols=271 Identities=15% Similarity=0.196 Sum_probs=209.7
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcc----------eeceeecccccceeEEEEec-CCCeEEEEEecC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL----------RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGD 473 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~----------~~~~~~~~h~~~v~~l~fs~-d~~~~~l~s~s~ 473 (1128)
|-..|.....++|+..+++++.+.....|+...+..+ .....+.+|.+.|++++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3445666777788777778877777777776544322 11224779999999999999 777 8999999
Q ss_pred CCeEEEEe-cCC-------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEE
Q 001190 474 DKLIKVWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1128)
Q Consensus 474 d~~i~vWd-~~g-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 545 (1128)
|++|++|| .++ .++..+.+|...|.+++|+|.. +.+|++++.|++|++||++++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 99999999 443 3567899999999999998853 36899999999999999999888888888999999999
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE----CCCcEEEEECCCCe-ee
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVN-IL 620 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~-~~ 620 (1128)
|+|+|.+|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+.+.. .+
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999884 999999999999999999988765556678888888888765 47999999998754 33
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEE-cCCcEEEEEcccCccccccccCCccccccCcceeeeeecc
Q 001190 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 688 (1128)
.....+ ....+....|++++++|++++ .|+.|++||+.++. ....... ....++..++|.|.
T Consensus 252 ~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~-~~~~~~~----~s~~~~~g~~~~pk 314 (493)
T PTZ00421 252 STVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER-LTFCSSY----SSVEPHKGLCMMPK 314 (493)
T ss_pred eEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc-eEEEeec----cCCCCCcceEeccc
Confidence 333322 223455667899999999887 49999999998873 2222211 12234566666664
No 106
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.9e-25 Score=212.09 Aligned_cols=302 Identities=17% Similarity=0.230 Sum_probs=222.0
Q ss_pred CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceeccc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1128)
+|...|++++|+.||+.|++++.|++|++|++..-........
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~------------------------------------- 126 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCI------------------------------------- 126 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHh-------------------------------------
Confidence 5556899999999999999999999999999876311110000
Q ss_pred CCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeec-c
Q 001190 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-N 785 (1128)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-d 785 (1128)
...+ ..+..+.++|+||-+.+++... .
T Consensus 127 -----------------------------------------------R~nv-----e~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 127 -----------------------------------------------RQNV-----EYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred -----------------------------------------------hccc-----cCCCceEEEECCCcceEEEEEccC
Confidence 0000 1123466778888776655544 5
Q ss_pred ceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceE
Q 001190 786 GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV 864 (1128)
Q Consensus 786 g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~ 864 (1128)
..+++|.+...+. |..... ...||-. .+. ..|.-.+..+-...++++|++++ |..|.+|++. |+.
T Consensus 155 ~~l~vyk~~K~~d---G~~~~~--~v~~D~~-------~f~-~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 155 NKLCVYKLVKKTD---GSGSHH--FVHIDNL-------EFE-RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred CEEEEEEeeeccc---CCCCcc--ccccccc-------ccc-hhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence 6788887654321 221111 1112210 010 12566677788888999999998 7789999998 899
Q ss_pred EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc---c-----eeeecccccccCeeEEEEcCCCCEEEEEcCC
Q 001190 865 MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV---D-----EVKSKLKGHQKRITGLAFSTSLNILVSSGAD 936 (1128)
Q Consensus 865 ~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~D 936 (1128)
+..+......-...++|| +|+++|+++---.|++|..-- | ..+..++||...|..++||++...++|++.|
T Consensus 221 L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred eeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence 988887777788899999 999999999999999998742 2 3456789999999999999999999999999
Q ss_pred CcEEEEECCCCccc----ceeEEe-ecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeE
Q 001190 937 AQLCVWSIDTWEKR----KSVTIH-IPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPIS 1011 (1128)
Q Consensus 937 g~i~iwd~~~~~~~----~~~~~~-~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~ 1011 (1128)
|+++|||++-.-.. ..+... .+..........+..+|.|+.|+++....+.+|..++++....+... |...|.
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~--h~~~Is 377 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI--HSTTIS 377 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh--hcCcee
Confidence 99999998642111 111111 12222235566999999999999999999999999999887776643 489999
Q ss_pred EEEEeeCCCEEEEEecCCcEEEEe
Q 001190 1012 CAVYSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 1012 ~l~~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
+++|++||+++++++ |..++|+.
T Consensus 378 ~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 378 SISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred eEEecCCCcEEeeec-ceeeeeec
Confidence 999999999999987 88888876
No 107
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.5e-25 Score=209.48 Aligned_cols=253 Identities=14% Similarity=0.255 Sum_probs=207.9
Q ss_pred CCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001190 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1128)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1128)
........+.-.+.+..|+|++.....+++++.||+++|||...... +.+.+++|...|.++
T Consensus 49 ~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Sv 110 (311)
T KOG0277|consen 49 KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSV 110 (311)
T ss_pred CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEe
Confidence 33445556678899999999999887889999999999999533221 223488999999999
Q ss_pred EEcc-CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEE
Q 001190 413 AWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFN 489 (1128)
Q Consensus 413 ~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~ 489 (1128)
.|++ +++.+++++-|++|++|+...++.+. ++.||...|...+|+|-... +++++|.|+++++|| ..|+.+.
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~- 185 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS- 185 (311)
T ss_pred ccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE-
Confidence 9999 56677888999999999999887666 68999999999999997666 899999999999999 5666665
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCC-eEEEeeeccCCCceEE
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~-~l~~~~~~~~~~~~i~ 567 (1128)
+..|...|.++.|+.. +...++||+.|+.|+.||++..+. ..++.+|+-.|+.++|||... .|++++. |-+++
T Consensus 186 i~ah~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~r 260 (311)
T KOG0277|consen 186 IEAHNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVR 260 (311)
T ss_pred EEeccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEE
Confidence 8899999999999865 457999999999999999987554 457888888999999999765 5566664 99999
Q ss_pred EEeCCCCc-eeeEeccccCCceeEEEEeC-CCCEEEEEECCCcEEEEEC
Q 001190 568 EWNESEGT-IKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 568 ~wd~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~ 614 (1128)
+||...+. .+.+...|. +.+..+.|++ ++.++++++.|+.++||+.
T Consensus 261 iw~~~~~ds~~e~~~~Ht-EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 261 IWDPERQDSAIETVDHHT-EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecccccchhhhhhhhccc-eEEeccccccccCceeeecccccceeeecc
Confidence 99998654 444455444 4788888876 4578999999999999984
No 108
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.5e-26 Score=225.16 Aligned_cols=283 Identities=14% Similarity=0.194 Sum_probs=232.0
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
-+|.++|.|++=+|..-..+|+|+.||.|+|||+.+..++.. +..|.+.|..|++.. ..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TS 121 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cc
Confidence 379999999999999744789999999999999998877654 888999999999987 78
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~ 499 (1128)
+++++.|++|+.|.++.. +++ ++.+ ...+..+.-+..+. .++|||. .|.||| ....++..+.--.+.|.+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred eEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeE
Confidence 889999999999998873 333 3332 34567777766666 7888874 588999 888899999888889999
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC-ceee
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKR 578 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~-~~~~ 578 (1128)
+.|+|... .+|++++.|+.|.+||++.......... ....+.++|+|.+-.++++. +|..++.+|++.. .++.
T Consensus 193 vkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 193 VKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred EecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhcccch
Confidence 99998764 6889999999999999998877655442 23467899999655555554 6999999999875 4677
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
.+.+|.. .|..+.|+|.|+.+++||.|.+|+||....+......-. .....|.|+.||-|.+++++|++|+.|++|..
T Consensus 267 v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 267 VHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 7888876 888999999999999999999999999988765443322 22346899999999999999999999999987
Q ss_pred ccC
Q 001190 659 AIG 661 (1128)
Q Consensus 659 ~~~ 661 (1128)
...
T Consensus 345 ~As 347 (433)
T KOG0268|consen 345 KAS 347 (433)
T ss_pred chh
Confidence 654
No 109
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.1e-25 Score=214.64 Aligned_cols=295 Identities=13% Similarity=0.186 Sum_probs=240.6
Q ss_pred ceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.+.+.+ +|+++||.|+-..... ++.+++.|.+.+||.+++|.++.. +.||.+.|.|++|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF 198 (481)
T ss_pred eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence 334444 4999999999887766 899999999999999999999865 8899999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEcc------C--------CC----------------------cc-eeceeecccccceeEE
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYA------G--------SN----------------------DL-RQHSQIDAHVGAVNDL 457 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~------~--------~~----------------------~~-~~~~~~~~h~~~v~~l 457 (1128)
++.+.++++++.|++..||... . ++ .+ ..+..|.+|.+.|.++
T Consensus 199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9999999999999999999721 1 00 01 1233578999999999
Q ss_pred EEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC-ceeeec
Q 001190 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYD 535 (1128)
Q Consensus 458 ~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~ 535 (1128)
.|...|+ .+++++.|.+..+|| .+|.++..+.||....+.++-+| ..+++++.+.|.+.++||++..- ....+.
T Consensus 279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhhcceeeeec
Confidence 9999999 699999999999999 99999999999999999998877 45899999999999999997532 345789
Q ss_pred CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc-eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 536 ~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
+|...|++..|..|. .+++++ .|.+|++||+++.+ ++.++.... .+..++.+..+..|+.--.+..|++||+
T Consensus 355 GHtdtVTS~vF~~dd-~vVSgS----DDrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDD-RVVSGS----DDRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ccccceeEEEEecCC-ceeecC----CCceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEec
Confidence 999999999998775 466666 48999999998865 555665443 6788888887778888888999999999
Q ss_pred CCCeeeEEE--ecCCCCCCcceEEEcCCC--CEEEEEEcCCcEEEEEcccC
Q 001190 615 DNVNILTST--DAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 615 ~~~~~~~~~--~~~~~~~~v~~v~~sp~~--~~l~~~~~dg~i~iw~~~~~ 661 (1128)
...++.... ...+|..-|.|++|..+. .-|.+++.|..+.-|.++..
T Consensus 428 nG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 428 NGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 766543322 233555578999998653 35778888999999988754
No 110
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=245.41 Aligned_cols=278 Identities=17% Similarity=0.246 Sum_probs=233.9
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
+...+.+..+. ...+++++.++++++|+. .++..+...+.+ |.+.|.+++|..-
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~----------------------~~~~~i~~~l~G--H~g~V~~l~~~~~ 260 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDL----------------------NNGYLILTRLVG--HFGGVWGLAFPSG 260 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeec----------------------ccceEEEeeccC--CCCCceeEEEecC
Confidence 44566777777 556889999999988854 455555555666 9999999999887
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEE
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 921 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 921 (1128)
+.++++|+ |.++++||+.+|++...+.+|...|.++...+ .++++|+.|.+|++|++.+++++..+.+|.++|.++
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 88999999 99999999999999999999999999999854 688899999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCc-ccccc
Q 001190 922 AFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKM-ERIRQ 999 (1128)
Q Consensus 922 ~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~-~~~~~ 999 (1128)
..+ +.++++|+.|++|++||+.+++++..+ .+|. ..|.++.+.+. ..++.|+ |+.|++||+.+. +++..
T Consensus 338 ~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl-----~gH~-~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL-----SGHT-GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec--CCEEEEEecCceEEEEEhhhceeeeee-----cCCc-ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence 997 789999999999999999988865544 4444 78889888777 6677765 999999999999 88888
Q ss_pred cccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEE
Q 001190 1000 WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1079 (1128)
Q Consensus 1000 ~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 1079 (1128)
+..+ ..-+..+.+ .+++|++++.|+.|++||.++++.+..+.. .|...+..+++. ...+++
T Consensus 409 l~~h---~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~-----------~~~~~v~~l~~~---~~~il~ 469 (537)
T KOG0274|consen 409 LQGH---TSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG-----------RHVGGVSALALG---KEEILC 469 (537)
T ss_pred hcCC---ccccccccc--ccceeEeccccccEEEeecccCceeeeecc-----------CCcccEEEeecC---cceEEE
Confidence 8776 555655554 688999999999999999999999999982 144555666654 368999
Q ss_pred EECCCcEEEEcCCCCCCC
Q 001190 1080 GLTDGSVKVMEPSESEGK 1097 (1128)
Q Consensus 1080 ~~~dg~i~iWd~~~~~~~ 1097 (1128)
++.||++++||+.+++..
T Consensus 470 s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 470 SSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred EecCCeeEEEecccCchh
Confidence 999999999999998764
No 111
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8e-23 Score=226.48 Aligned_cols=514 Identities=16% Similarity=0.219 Sum_probs=338.1
Q ss_pred ccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCc-cEEEEEeccCcEEEEecC
Q 001190 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYD 526 (1128)
Q Consensus 449 ~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~ 526 (1128)
|-...-..-.|++|++. ++.+. +..|.|+. .+|.++..+.+|..++..+.+.+.... .++++++.||.|++||..
T Consensus 14 g~n~~~~~avfSnD~k~--l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKF--LFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred cccceecccccccCCcE--EEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 33333444579999994 44333 67999999 999999999999999999999887654 678899999999999998
Q ss_pred CCCceeeecCCCCeEEEEEEcC----CCCeEEEeeeccCCCceE-EEEeCCCCc-----eeeEeccccC------CceeE
Q 001190 527 TMGSRVDYDAPGHWCTTMLYSA----DGSRLFSCGTSKDGDSFL-VEWNESEGT-----IKRTYAGFRK------KSNGV 590 (1128)
Q Consensus 527 ~~~~~~~~~~~~~~i~~~~~s~----~g~~l~~~~~~~~~~~~i-~~wd~~~~~-----~~~~~~~~~~------~~v~~ 590 (1128)
.+....++..+.. +..+.+.| .. ..+..+. ++..+ ......... .+.++..+.. ..-.+
T Consensus 91 ~~~Llkt~~~~~~-v~~~~~~~~~a~~s-~~~~~s~---~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~ 165 (792)
T KOG1963|consen 91 DGELLKTFDNNLP-VHALVYKPAQADIS-ANVYVSV---EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS 165 (792)
T ss_pred CcEEEEEEecCCc-eeEEEechhHhCcc-ceeEeec---ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence 8877777665543 33333322 11 1221111 01111 000011111 1111111111 01345
Q ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCeeeEE--EecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccc
Q 001190 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS--TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (1128)
Q Consensus 591 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 668 (1128)
+.+++.+.+.... .+..+.+|+......... -....|.-.+++.++||+++++|+|..||.|.+|.-...
T Consensus 166 I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------- 237 (792)
T KOG1963|consen 166 IVDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------- 237 (792)
T ss_pred EEEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------
Confidence 6777776655444 456788998877541111 111123334789999999999999999999999964221
Q ss_pred cCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEee
Q 001190 669 ENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVD 748 (1128)
Q Consensus 669 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~ 748 (1128)
. +.+-+..+|..
T Consensus 238 ~---------------------------------------------------------------~~~~t~t~lHW----- 249 (792)
T KOG1963|consen 238 S---------------------------------------------------------------DDSETCTLLHW----- 249 (792)
T ss_pred c---------------------------------------------------------------cccccceEEEe-----
Confidence 0 00012222222
Q ss_pred CCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCC
Q 001190 749 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 828 (1128)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1128)
|...|.+++|+++|.+|++||..|.+.+|.+.+. . ...++.
T Consensus 250 --------------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~----------------------~--kqfLPR- 290 (792)
T KOG1963|consen 250 --------------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG----------------------K--KQFLPR- 290 (792)
T ss_pred --------------cccccceeEEecCCceEeecccceEEEEEeecCC----------------------C--cccccc-
Confidence 7789999999999999999999999999976532 2 122333
Q ss_pred CCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCC-----------CCCeeEEEEcCCCCCEEEEEeCCCc
Q 001190 829 NLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP-----------PPASTFLAFHPQDNNIIAIGTEDST 896 (1128)
Q Consensus 829 ~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~-----------~~~v~~l~~s~~d~~~lasg~~dg~ 896 (1128)
...+|..+.+|||+.+.+... |+.|.+....+.+...++.+. .+-.+.++++| .-+.++..+..|.
T Consensus 291 -Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~ 368 (792)
T KOG1963|consen 291 -LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGH 368 (792)
T ss_pred -cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCce
Confidence 678899999999999888775 999999988776665555432 22367788998 6777888899999
Q ss_pred EEEEecccceeeeccc-----------ccccCeeEEEEcCCCCEEEEEc--------CCC--cEEEEECCCCcccceeEE
Q 001190 897 IHIYNVRVDEVKSKLK-----------GHQKRITGLAFSTSLNILVSSG--------ADA--QLCVWSIDTWEKRKSVTI 955 (1128)
Q Consensus 897 v~iwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d~~~l~s~~--------~Dg--~i~iwd~~~~~~~~~~~~ 955 (1128)
|.+||+-+.+.+..+. .+.-.+++++.+..|.+++|+- .|| .+++|-.....+...+..
T Consensus 369 vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T 448 (792)
T KOG1963|consen 369 VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT 448 (792)
T ss_pred EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE
Confidence 9999998876554432 2334688888998999999874 233 578999988877777777
Q ss_pred eecCCCCCCCccEEEEcCCCC-EEEEE-ecCeEEEEecCCcccccc----c---ccCCCCCCCeEEEEEeeCCCEEEEEe
Q 001190 956 HIPAGKTPTGDTRVQFNADQV-RMLVV-HETQLAIYDASKMERIRQ----W---TPQDALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 956 ~~~~~~~~~~v~~v~~s~d~~-~l~~~-~d~~i~v~d~~~~~~~~~----~---~~~~~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
.+...|....+..+..++... .++++ .|+.++||-....+.+.. | ..+..|..++++++||.||..|+++
T Consensus 449 ~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s- 527 (792)
T KOG1963|consen 449 KINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS- 527 (792)
T ss_pred EEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-
Confidence 777777755555555555444 55554 699999999854433221 1 1122468999999999999866655
Q ss_pred cCCcEEEEecCC-CceEEEeCCCCCCCCcccCCCCccceEEEEEecC-CCCEEEEEECCCcEEEEcCCCCCCCccc
Q 001190 1027 CDGNIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL-EPNQFAIGLTDGSVKVMEPSESEGKWGV 1100 (1128)
Q Consensus 1027 ~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~l~s~~~dg~i~iWd~~~~~~~w~~ 1100 (1128)
.|+.|.+||..+ .++.+......+. +..+.|..+ -....+.....+.+.+|++.+....|..
T Consensus 528 ~~~~Itiwd~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~ 591 (792)
T KOG1963|consen 528 FDDTITIWDYDTKNELLCTEGSRNWP------------IAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIWNL 591 (792)
T ss_pred cCCEEEEecCCChhhhhccccccccc------------hHhHhhhcccccccceeeccCceEehHhhhhhheecch
Confidence 689999999999 5555544422111 111222111 0122334445678999999999999943
No 112
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-22 Score=225.46 Aligned_cols=564 Identities=13% Similarity=0.141 Sum_probs=350.1
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCe-EEEEEecCCCeEEEEe-cCCCe
Q 001190 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL-LCVVTCGDDKLIKVWE-LSGRK 486 (1128)
Q Consensus 409 V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~-~~l~s~s~d~~i~vWd-~~g~~ 486 (1128)
-..-.||+|+++++.+.. ..|.||...+|++++ .+.+|..++..+.+.|.... .++++++.||.|++|| ..+.+
T Consensus 19 ~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred ecccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 334579999999987765 479999999999888 58899999999999887653 4788999999999999 88888
Q ss_pred EEEecCCCCCeEEEeccC--CCCccEEEEEeccC------------cEEEEecCCCCcee-eecCCCCeEEEEEEcCCCC
Q 001190 487 LFNFEGHEAPVYSICPHH--KENIQFIFSTAIDG------------KIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGS 551 (1128)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~--~~~~~~l~s~~~dg------------~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~~g~ 551 (1128)
+.++..+.. +..+.+.+ -.....+..+..|. .++-+.+.+..... .+......-.++.+++.|.
T Consensus 95 lkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 95 LKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 887764432 33332211 00111111222221 11111111111000 0000111246788888888
Q ss_pred eEEEeeeccCCCceEEEEeCCCCce---eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC--CeeeEEEecC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTSTDAE 626 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~~~~~~~ 626 (1128)
+..... +..+.+|+..++.. .+....++...+.+.+++|.+++++++..||.|.+|.--. +........|
T Consensus 174 ~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 174 FKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred EEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 877765 66789999887551 1112233333578899999999999999999999997543 3333333345
Q ss_pred CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceeccc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1128)
-|...|.+++|+++|.+|++|+..+.+.+|.+.++.+.+-
T Consensus 249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfL---------------------------------------- 288 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFL---------------------------------------- 288 (792)
T ss_pred ecccccceeEEecCCceEeecccceEEEEEeecCCCcccc----------------------------------------
Confidence 5666899999999999999999999999999988732110
Q ss_pred CCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccc
Q 001190 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1128)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 786 (1128)
|. -.+.|..+.++||+.+......|+
T Consensus 289 ---------------------------------------------------PR---Lgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 289 ---------------------------------------------------PR---LGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred ---------------------------------------------------cc---cCCeeEEEEEcCCCCeEEEEecCc
Confidence 00 345678888888888888888888
Q ss_pred eeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEE-eCCeEEEEECCCceEE
Q 001190 787 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-TGGKISLFNMMTFKVM 865 (1128)
Q Consensus 787 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~dg~i~vwd~~~~~~~ 865 (1128)
.|.+-..........-... ...+... -. ...+-.+.++++|--+.++.. ..|.|.+||+.+-+.+
T Consensus 315 qI~li~~~dl~~k~tIsgi--------~~~~~~~----k~--~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 315 QIHLIKASDLEIKSTISGI--------KPPTPST----KT--RPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred eEEEEeccchhhhhhccCc--------cCCCccc----cc--cccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 8888765332210000000 0000000 00 133446778888844444444 4899999999887766
Q ss_pred EEee-----CC------CCCeeEEEEcCCCCCEEEEEe--------CCC--cEEEEecccceee-----ecccccccCee
Q 001190 866 TTFM-----SP------PPASTFLAFHPQDNNIIAIGT--------EDS--TIHIYNVRVDEVK-----SKLKGHQKRIT 919 (1128)
Q Consensus 866 ~~~~-----~~------~~~v~~l~~s~~d~~~lasg~--------~dg--~v~iwd~~~~~~~-----~~l~~h~~~V~ 919 (1128)
..+. .+ .-.+++++.+. .|.+++++- .|| .+++|-......- .....|...+.
T Consensus 381 ~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~v 459 (792)
T KOG1963|consen 381 YKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFV 459 (792)
T ss_pred eeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeE
Confidence 5543 12 22478888888 699998874 333 4778876543221 22345777666
Q ss_pred EEEEcCC-CC-EEEEEcCCCcEEEEECCCCcccce----eEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCC
Q 001190 920 GLAFSTS-LN-ILVSSGADAQLCVWSIDTWEKRKS----VTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASK 993 (1128)
Q Consensus 920 ~l~~s~d-~~-~l~s~~~Dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~ 993 (1128)
..+|.+. .. .+++++.||.++||-+...+.+.. -..+........++...+|+.||..|+++.++.|.+||..+
T Consensus 460 at~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 460 ATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 6666443 23 899999999999999843221111 11111111233788999999999999999999999999988
Q ss_pred cccccccccCCCCCCCeEEEEEee----CCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCC----cccCCCCccceE
Q 001190 994 MERIRQWTPQDALSAPISCAVYSC----NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP----SVLNGSQTVYPL 1065 (1128)
Q Consensus 994 ~~~~~~~~~~~~h~~~v~~l~~s~----dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 1065 (1128)
........... ..++..+.|.. |+. +.......+.+|++.++.+............ .+....+.+...
T Consensus 540 ~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~ 615 (792)
T KOG1963|consen 540 KNELLCTEGSR--NWPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGST 615 (792)
T ss_pred hhhhhcccccc--ccchHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCcc
Confidence 43322222211 33444444433 333 3444678999999999888773332111111 000112222223
Q ss_pred EEEEecCCCCEEE--------EEECCCcEEEEcCCCCC
Q 001190 1066 VVAAHPLEPNQFA--------IGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1066 ~~~~~p~~~~~l~--------s~~~dg~i~iWd~~~~~ 1095 (1128)
..++.+..+..+. ..+.|+.|.+|+.+..+
T Consensus 616 ~f~vi~~~p~~~~~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 616 AFAVICWLPELLLVVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred ceEEEeecccchhhhhhhhhhcccccceEEEecCCCch
Confidence 3333332223333 78889999999888776
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1e-25 Score=222.62 Aligned_cols=241 Identities=17% Similarity=0.262 Sum_probs=200.7
Q ss_pred ccCCCcceEEEEEccCC-CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 402 FKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
+.||..+|.|+|=+|.. ..+|+|+.||.|+|||+...++++ ++..|.+.|..|++.. + .+++++.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc-c---ceEEecCCcceeee
Confidence 68999999999999987 889999999999999999988777 5889999999999987 3 58999999999999
Q ss_pred ecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 481 d~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
-..|.+++++.+.. .+..+.-+. .+..++|++. .|.|||.........+.-....|.++.|+|-...++.++.
T Consensus 135 k~~~~p~~tilg~s-~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 135 KIDGPPLHTILGKS-VYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eccCCcceeeeccc-ccccccccc--ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--
Confidence 98888888876533 455555443 3357778775 5889999888888888888889999999998877666554
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe-eeEEEecCCCCCCcceEEEcC
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~sp 639 (1128)
.|+.|.+||++++.+++...... ....++|+|.+-.+++|++|..++.||+...+ ++.... +|.+.|.++.|||
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~--dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK--DHVSAVMDVDFSP 282 (433)
T ss_pred -cCCceEEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhcccchhhc--ccceeEEEeccCC
Confidence 48999999999999887765443 35669999987788889999999999998754 344444 4556899999999
Q ss_pred CCCEEEEEEcCCcEEEEEcccC
Q 001190 640 EGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.|+-+++|+.|.+|+||..+.+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CcchhccccccceEEEeecCCC
Confidence 9999999999999999988765
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.8e-24 Score=206.88 Aligned_cols=268 Identities=17% Similarity=0.260 Sum_probs=214.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-.+.|..|.|+|.+..| ++++.||++++||+....... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~L-LvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDL-LVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCcE-EEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 46789999999998855 555799999999998764432 334899999999987 56788
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~ 501 (1128)
+|+.||.|+.+|++++.... +..|..+|+++.+++... .+++||.|++|++|| ........+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987654 778999999999998777 799999999999999 4433333333 344788887
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceeeecC--CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC----c
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG----T 575 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~----~ 575 (1128)
. .+..|++|+.|..|.+||++.......... -...++++++-|++.-.++++. +|+|.+=..+.. .
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 6 456899999999999999988766553222 2347899999998777777764 777877666554 4
Q ss_pred eeeEeccccC--------CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001190 576 IKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1128)
Q Consensus 576 ~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 647 (1128)
....|+.|.. .+|..++|+|--+.|++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 4556666653 25788999999999999999999999999999888877644 3369999999999999999
Q ss_pred Ec
Q 001190 648 TA 649 (1128)
Q Consensus 648 ~~ 649 (1128)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=5.3e-24 Score=218.66 Aligned_cols=293 Identities=14% Similarity=0.204 Sum_probs=234.2
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.+.+.+|.|.+-|+++.+|...+ .+.||+ .|.|+|||+...... .++ ..--.....+.|+++.+
T Consensus 410 arq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k--~Pv------------sqLdcl~rdnyiRSckL 473 (705)
T KOG0639|consen 410 ARQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNK--SPV------------SQLDCLNRDNYIRSCKL 473 (705)
T ss_pred HHhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCC--Ccc------------ccccccCcccceeeeEe
Confidence 34567888999999999999988 568875 679999999654211 011 11112235678999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
+|||+.|++|+.-.++.|||+.+.... ....+..-.-..++++.+||.+ +.++|..||.|.||| .+...++.|.||
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGh 550 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH 550 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCC
Confidence 999999999999999999999876432 2223444455788899999999 888999999999999 777788999999
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
.+.+.|+.++. ||..|.+|+-|++||.||++.+........ ...|.++.++|.+.+++.+-. ++.+.+.....
T Consensus 551 tDGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~sk 623 (705)
T KOG0639|consen 551 TDGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSK 623 (705)
T ss_pred CCCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecCC
Confidence 99999999965 788999999999999999988776654432 346999999999999999874 66676666543
Q ss_pred CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE
Q 001190 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1128)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 653 (1128)
. ....+..|.. .|.++.|.+.|+++++.+.|..+..|...-|..+..... ...|.++.+|.|.+++++|+.|...
T Consensus 624 p-~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 624 P-EKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKA 698 (705)
T ss_pred c-cceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcce
Confidence 3 2334444444 788899999999999999999999999998887766643 3479999999999999999999888
Q ss_pred EEEEc
Q 001190 654 KILAN 658 (1128)
Q Consensus 654 ~iw~~ 658 (1128)
.+|.+
T Consensus 699 TVYeV 703 (705)
T KOG0639|consen 699 TVYEV 703 (705)
T ss_pred EEEEE
Confidence 88864
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.4e-24 Score=207.03 Aligned_cols=243 Identities=19% Similarity=0.235 Sum_probs=204.3
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+..|.++|+++|.+ |.|+|+|+.|-+|+|||+.....+. .+..|.+.|+++.|.++-....|++|++||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 367899999999995 8999999999999999999877665 56789999999999988642259999999999999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
+ ..-.++..+++|.+.|+.+++||+ +++.++.+.|+.+++||+-.++.-..+..... ...+.|+|.|.+++..+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe--
Confidence 9 778899999999999999999995 58999999999999999988877776665443 34499999999888876
Q ss_pred cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE--
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF-- 637 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-- 637 (1128)
...|-+|.+.+......+.... .+.++.|. ++..+++|+.|+.|.+||.++..+...+..| ..+|.++.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--hhheeeeEEEe
Confidence 6679999998877766665442 35555554 5678999999999999999998888877755 448888874
Q ss_pred cCCCCEEEEEEcCCcEEEEEcccC
Q 001190 638 SKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 638 sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.|++.+|++++.||.|++||++..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 568899999999999999999876
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-21 Score=215.95 Aligned_cols=278 Identities=15% Similarity=0.201 Sum_probs=225.6
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
..|..+-+.++|.|+|. +|.+++.||.|++|+...-... + ..+..|+..|.+++.. +.+
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~-----------------P-~ti~~~g~~v~~ia~~--s~~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEE-----------------P-ETIDISGELVSSIACY--SNH 68 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccC-----------------C-chhhccCceeEEEeec--ccc
Confidence 36888999999999999 7788889999999997654211 0 1122277788888764 459
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~ 499 (1128)
|++|+.+++|.+|...+++.-. .+...+-++++++|+.+|+ ++|.||.|-.|++-+ .++.....+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999999887543 2445677899999999999 899999999999999 888889999999999999
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC--------CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--------~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
+.|+| ++.+|++.+.||.|++|+++.+.....+..- ...+..++|+|+|..+++.+. ++.|.+|+.
T Consensus 144 l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r 217 (933)
T KOG1274|consen 144 LSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSR 217 (933)
T ss_pred eeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEcc
Confidence 99977 6689999999999999999987776654432 336778999999766666653 899999999
Q ss_pred CCCceeeEeccccCCc-eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC
Q 001190 572 SEGTIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
.+......+....... +..+.|+|.|.||++++.||.|.|||.++-+. +.....|.+++|.|+.+.+-.-...
T Consensus 218 ~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITAL 291 (933)
T ss_pred CCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeec
Confidence 9999888887654433 88899999999999999999999999988222 3334579999999998877666655
Q ss_pred CcEEEE
Q 001190 651 NGFKIL 656 (1128)
Q Consensus 651 g~i~iw 656 (1128)
|...+|
T Consensus 292 g~~~~~ 297 (933)
T KOG1274|consen 292 GTLGVS 297 (933)
T ss_pred cccccC
Confidence 555544
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.9e-24 Score=206.78 Aligned_cols=276 Identities=16% Similarity=0.170 Sum_probs=214.8
Q ss_pred CCCcceEEEEEcc-CCCEEEEEeCCCeEEEEEccCC-CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 404 DVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 404 ~h~~~V~~l~~sp-dg~~las~~~d~~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..++.|.+|+||| ...++++++-|++||+|+++.. .... .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 3578999999999 5556668899999999999873 3332 24568999999999999998 899999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+| .+..+..|.++|..+.|.+..+-..|++|+.|++|++||.+......++..++. ++++..- ..+++.+.
T Consensus 101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv~--~pm~vVat--- 173 (347)
T KOG0647|consen 101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADVL--YPMAVVAT--- 173 (347)
T ss_pred ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhcc--CceeEEEe---
Confidence 666 677888899999999998776667899999999999999998888777776653 5554432 23455554
Q ss_pred CCCceEEEEeCCCCce-eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC--eeeEEEecCCC-------CC
Q 001190 561 DGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGG-------LP 630 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 630 (1128)
.+..|.+|+++.+.. .+.....-+..+.++++..+....+.|+-+|.+.|..+..+ +.-..+..|.. .-
T Consensus 174 -a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 174 -AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred -cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 388899999976543 23333333446889999998888899999999999998876 33334444442 22
Q ss_pred CcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCC
Q 001190 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 697 (1128)
.|++++|+|.-..|++++.||++.+||-+...+ ++. ...+..+|.+..|+.+|++++++.+
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k-Lk~-----s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK-LKT-----SETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhhhh-hhc-----cCcCCCccceeEecCCCCEEEEEee
Confidence 578899999989999999999999999876522 222 2335568999999999999987644
No 119
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.3e-24 Score=205.39 Aligned_cols=305 Identities=13% Similarity=0.196 Sum_probs=220.3
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee----eecCCCCeEEEEEEcCCCCeEEEeeeccCCC
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
..+++|.+.|++++|+. ||++|++++.|+.|++|+++...... ....+-+..+.+.|+||-+.++.... ..
T Consensus 80 ~~LKgH~~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~---~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK---RG 154 (420)
T ss_pred hhhhccCCceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc---cC
Confidence 46789999999999965 88999999999999999997754322 22223335788999999988776664 36
Q ss_pred ceEEEEeCCC---CceeeE--------eccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCc
Q 001190 564 SFLVEWNESE---GTIKRT--------YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 564 ~~i~~wd~~~---~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
..+++|.... |..... |...+.-.+-.+-....+.+|++++.|..|.+|++. |+.+..+..... .-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cc
Confidence 6788887643 221111 111111123334555667899999999999999998 888887764332 44
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (1128)
...+.||+|+++++++..-.|++|.. .|..||..-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~-------------------------~f~kdG~fq-------------------- 266 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEP-------------------------IFTKDGTFQ-------------------- 266 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEE-------------------------EeccCcchh--------------------
Confidence 67889999999999999999999974 222333211
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeee
Q 001190 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1128)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~ 792 (1128)
...+++.+ .||...|..++|+++..++++.+.||.+++||
T Consensus 267 -----------------------ev~rvf~L-----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 267 -----------------------EVKRVFSL-----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred -----------------------hhhhhhee-----------------ccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 22234443 34999999999999999999999999999999
Q ss_pred ccccCC-CCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEee-C
Q 001190 793 WHRNEQ-NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-S 870 (1128)
Q Consensus 793 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~-~ 870 (1128)
.+..-. ..+.+ -+..|. .++.. .......++++|.|+.||.+....+++|..++|+...+++ .
T Consensus 307 tdVrY~~~qDpk----------~Lk~g~---~pl~a--ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~ 371 (420)
T KOG2096|consen 307 TDVRYEAGQDPK----------ILKEGS---APLHA--AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI 371 (420)
T ss_pred ccceEecCCCch----------HhhcCC---cchhh--cCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh
Confidence 764311 00000 011111 11111 3344458999999999999999999999999998877765 5
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEec
Q 001190 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (1128)
Q Consensus 871 ~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~ 902 (1128)
|...|.+++|++ +|+++|+++ |..++++.-
T Consensus 372 h~~~Is~is~~~-~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 372 HSTTISSISYSS-DGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred hcCceeeEEecC-CCcEEeeec-ceeeeeecC
Confidence 889999999999 999999887 788888763
No 120
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=3.1e-23 Score=234.85 Aligned_cols=251 Identities=14% Similarity=0.206 Sum_probs=193.2
Q ss_pred EeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC-CCeEEEEEecCCCeEEEEe-cCCC--------eEEEecCC
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR--------KLFNFEGH 493 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d-~~~~~l~s~s~d~~i~vWd-~~g~--------~~~~~~~h 493 (1128)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +. +|+||+.|++|++|| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v~---~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI---KLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceEE---EEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5678889999987754433 68899999999999997 56 899999999999999 4432 34567899
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
...|.+++|+|.. ..+|++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 9999999998853 2356799999999999999887766665 4568999999999999998873 88999999999
Q ss_pred CceeeEeccccCCc----eeEEEEeCCCCEEEEEECCC----cEEEEECCC-CeeeEEEecCCCCCCcceEEEcCCCCEE
Q 001190 574 GTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDS----QIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 574 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l 644 (1128)
++.+..+.+|.+.. +....|++++++|++++.|+ .|++||+++ ++++.....+.....+......+++.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999988632 12234568899999988764 799999985 5666666555544333334445568899
Q ss_pred EEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccc
Q 001190 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1128)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 690 (1128)
++|..|+.|++|++..+. ...+.. .....++.+++|.|...
T Consensus 279 lsGkGD~tIr~~e~~~~~--~~~l~~---~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS--IRKVNE---YKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEECCCeEEEEEccCCc--EEeecc---cccCCCccceEEccccc
Confidence 999999999999997652 222221 11345677788888644
No 121
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-24 Score=203.64 Aligned_cols=252 Identities=20% Similarity=0.301 Sum_probs=208.5
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec--CCCeEEEEEecCCCeEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~--d~~~~~l~s~s~d~~i~ 478 (1128)
+...|.+.|..+...--|++||+|+.|++|+|+.+........+.+|.||.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4667999999998888899999999999999999998776666778999999999999987 688 899999999999
Q ss_pred EEe-cCCC--eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc---eeeecCCCCeEEEEEEcCC---
Q 001190 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD--- 549 (1128)
Q Consensus 479 vWd-~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~i~~~~~s~~--- 549 (1128)
||. ..|+ .......|...|++++|.|.+-|-.|++++.||.|.+.+++..+. ......|.-.|+++++.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999 5553 245667899999999999999999999999999999999877622 2345567778999999986
Q ss_pred C-----------CeEEEeeeccCCCceEEEEeCCCCc--eeeEeccccCCceeEEEEeCCC----CEEEEEECCCcEEEE
Q 001190 550 G-----------SRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQIKFW 612 (1128)
Q Consensus 550 g-----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~i~iw 612 (1128)
| +.|++++. |..|+||+...++ ..+++.+|.+ -|..++|.|.- .+|++++.||++.||
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 5 56888885 9999999998764 4456888887 89999999864 579999999999999
Q ss_pred ECCCC-eeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 613 DMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 613 d~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
..... +.-.....+.....+..+.||..|+.|++++.|+.+.+|.-+
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 87532 121111222334468999999999999999999999999754
No 122
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.3e-23 Score=212.76 Aligned_cols=238 Identities=16% Similarity=0.258 Sum_probs=211.3
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~ 485 (1128)
-.+.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+++.. .+++++.|..|+||. ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 468888888887899999999999999999988776 6899999999999999998 799999999999999 6666
Q ss_pred eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC--CCeEEEEEEcCCCCeEEEeeeccCCC
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
.......|+++|+.+..++ +|.||++++.||++.+.|++++......... .-.+++.+|.|||..+.++.. |
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 7778888999999999987 5679999999999999999998877665543 347899999999999998884 9
Q ss_pred ceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCE
Q 001190 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 643 (1128)
+.+++||+.++..+..|.+|.. .|..++|+.+|-+|++++.|+.|++||++..+...++...... .+.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 9999999999999999999887 9999999999999999999999999999999988888876654 7899999999999
Q ss_pred EEEEEcCCcEEEEE
Q 001190 644 LAVTTADNGFKILA 657 (1128)
Q Consensus 644 l~~~~~dg~i~iw~ 657 (1128)
|+.++.+=.|++++
T Consensus 447 L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 447 LGIAGSDLQVYICK 460 (506)
T ss_pred EEeecceeEEEEEe
Confidence 99997765555554
No 123
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=203.47 Aligned_cols=324 Identities=15% Similarity=0.264 Sum_probs=229.3
Q ss_pred eecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEe
Q 001190 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1128)
Q Consensus 446 ~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 524 (1128)
.+.||...|+.++...... .+.+++.|.+.+||. .+|+++..+.||.+.|+++.|++ .+.++++++.|++-.||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~--s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN--SGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeecccccceeeEEecc--ccceEEEccCCcchHHHH
Confidence 5889999999999876555 899999999999999 99999999999999999999988 457999999999999996
Q ss_pred cCCCCceeee---cCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEE
Q 001190 525 YDTMGSRVDY---DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 525 ~~~~~~~~~~---~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 601 (1128)
..-.-....- ..|... ....-+........+.. +....+|+ .++..+.+|.. .|.++.|-..|+.++
T Consensus 219 ~av~~~vP~~~a~~~hSsE-eE~e~sDe~~~d~d~~~-~sD~~tiR-------vPl~~ltgH~~-vV~a~dWL~gg~Q~v 288 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSE-EEEEHSDEHNRDTDSSE-KSDGHTIR-------VPLMRLTGHRA-VVSACDWLAGGQQMV 288 (481)
T ss_pred HhhcCcCCCCCCCCCCCch-hhhhccccccccccccc-ccCCceee-------eeeeeeecccc-ceEehhhhcCcceee
Confidence 3211110000 000000 00000000000000000 00011222 35677888887 888889999999999
Q ss_pred EEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcce
Q 001190 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIE 681 (1128)
Q Consensus 602 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~ 681 (1128)
+++.|.+..+||+++++++..+.+|.+ ..+-++-+|..+++++.+.|.+.++||+.... .
T Consensus 289 TaSWDRTAnlwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI------------------~ 348 (481)
T KOG0300|consen 289 TASWDRTANLWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI------------------Q 348 (481)
T ss_pred eeeccccceeeeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhc------------------c
Confidence 999999999999999999999987655 68888999999999999999999999986321 1
Q ss_pred eeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCC
Q 001190 682 SVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPEST 761 (1128)
Q Consensus 682 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 761 (1128)
++++ + .
T Consensus 349 sV~V-----------------------------------------------------------------------F---Q 354 (481)
T KOG0300|consen 349 SVAV-----------------------------------------------------------------------F---Q 354 (481)
T ss_pred eeee-----------------------------------------------------------------------e---c
Confidence 1100 0 1
Q ss_pred CCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc
Q 001190 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 762 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1128)
| |.+.|+++.|..
T Consensus 355 G-------------------------------------------------------------------HtdtVTS~vF~~ 367 (481)
T KOG0300|consen 355 G-------------------------------------------------------------------HTDTVTSVVFNT 367 (481)
T ss_pred c-------------------------------------------------------------------cccceeEEEEec
Confidence 1 455555555554
Q ss_pred CCCeEEEEe-CCeEEEEECCCceE-EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee----cccccc
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS----KLKGHQ 915 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~----~l~~h~ 915 (1128)
|.+. ++|+ |.+|+|||+.+... +.++. -..++..++++. ++.++|.--.+..|++||+...++.+ .-++|.
T Consensus 368 dd~v-VSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHr 444 (481)
T KOG0300|consen 368 DDRV-VSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHR 444 (481)
T ss_pred CCce-eecCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccc
Confidence 4433 3333 55666666665432 33443 456788899998 88899999999999999997554322 335899
Q ss_pred cCeeEEEEcCCCC--EEEEEcCCCcEEEEECCCC
Q 001190 916 KRITGLAFSTSLN--ILVSSGADAQLCVWSIDTW 947 (1128)
Q Consensus 916 ~~V~~l~~s~d~~--~l~s~~~Dg~i~iwd~~~~ 947 (1128)
.-|+|++|..+.. -|+++|-|..+.-|++...
T Consensus 445 RMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 445 RMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999999986643 5889999999999998763
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=7.2e-24 Score=217.65 Aligned_cols=282 Identities=13% Similarity=0.176 Sum_probs=229.5
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
|..-|.++.++...+++++++ .|.|+|||+.... .. ..+ ..+........|+++.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg-----~k--------------~Pv-sqLdcl~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPG-----NK--------------SPV-SQLDCLNRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCC-----CC--------------Ccc-ccccccCcccceeeeEecCC
Confidence 777788889999888888776 4689999986421 10 000 01222236778999999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceE--EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCee
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 919 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 919 (1128)
|+.|++|+ -.++.|||+..-.. ..++........+++.+| |.++.++++.||.|.|||+.+...++.|+||++.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999998 57799999986544 334444445688999999 999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccc
Q 001190 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 920 ~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
|+.+++||..|-||+-|.+||-||+..+.++....+. +.|.++..+|.+.|+++|- .+.+.|........ .
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~-------SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-y 627 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-Y 627 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh-------hhheecccCCCccceeeecccCcEEEEecCCccc-e
Confidence 9999999999999999999999999998876555444 7889999999999999985 77788877654433 2
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
.+. -|.+.|.++.|++-|+++++.+.|+.+-.|...-|..+.... ....|+++..+. |..+++
T Consensus 628 qlh---lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-------------E~SsVlsCDIS~-ddkyIV 690 (705)
T KOG0639|consen 628 QLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-------------ESSSVLSCDISF-DDKYIV 690 (705)
T ss_pred eec---ccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-------------ccCcceeeeecc-CceEEE
Confidence 222 248999999999999999999999999999999998777655 334568888887 689999
Q ss_pred EEECCCcEEEEcC
Q 001190 1079 IGLTDGSVKVMEP 1091 (1128)
Q Consensus 1079 s~~~dg~i~iWd~ 1091 (1128)
+|+.|..-.||.+
T Consensus 691 TGSGdkkATVYeV 703 (705)
T KOG0639|consen 691 TGSGDKKATVYEV 703 (705)
T ss_pred ecCCCcceEEEEE
Confidence 9999998888865
No 125
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.8e-23 Score=198.92 Aligned_cols=297 Identities=14% Similarity=0.178 Sum_probs=223.1
Q ss_pred CCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEE
Q 001190 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
+.|..+..++.|.. -.|+.||+.|. +||+|..||.|.|||+.|-..- .++.+|..+|+|
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeE
Confidence 45566777777766 89999999998 7899999999999999886532 358999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~ 491 (1128)
++||+||+.|++++.|..|.+||+..|.+++++ ....+|+.+.|.|-..+..+++-- +..-.+-+.+......+.
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHSVLP 145 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCceeecc
Confidence 999999999999999999999999999987754 357789999999977764444433 433444442222112221
Q ss_pred CCC-CCeEEE--eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC-CeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 492 GHE-APVYSI--CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 492 ~h~-~~v~~~--~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
... +..... +-.++..|+++++|...|.+.++|..+.++...+.... ..|..+.++..|++++..+. |..|+
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR 221 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIR 221 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEE
Confidence 111 111111 11134567999999999999999999998887776665 68999999999999999884 99999
Q ss_pred EEeCCCC-------c--eeeEeccc-cCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 568 EWNESEG-------T--IKRTYAGF-RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 568 ~wd~~~~-------~--~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
.|++..- + +.+.++.- ....-.+++|+.+|.++++++ ....++||....|.+++.+.+..+. ....+.
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~ 300 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVN 300 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecc
Confidence 9987621 1 11222211 111345689999999999887 4567999999999999998765532 567899
Q ss_pred EcCCCCEEEEEEcCCcEEEEEccc
Q 001190 637 FSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 637 ~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
|+|-...+++- ..|.+++|....
T Consensus 301 whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 301 WHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cccceeeeeec-cCCceEEEEeec
Confidence 99988777777 689999998754
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.5e-23 Score=212.36 Aligned_cols=223 Identities=14% Similarity=0.163 Sum_probs=191.7
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c--
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-- 482 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~-- 482 (1128)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+++.|+.||. +|+|||.||.|.+|+ .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4589999999999999999999999999999999876 4789999999999999999 899999999999997 2
Q ss_pred -------CCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 483 -------SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 483 -------~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+-++++.|..|.-+|+++...+.+-..+++|++.|.++++||+..+.....+. ....+.+++++|-++.+++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEe
Confidence 23567899999999999998877666899999999999999998876666555 3457999999999999999
Q ss_pred eeeccCCCceEEEEeCCC----------------CceeeEeccccC-CceeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 556 CGTSKDGDSFLVEWNESE----------------GTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
|+. +|.|.+.++.. +..+..+.||.+ ..|+|++++.||..|++|+.||.|+|||..+.+
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 884 88888876543 234556777876 579999999999999999999999999999999
Q ss_pred eeEEEecCCCCCCcceEEEcCC
Q 001190 619 ILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
+++++... .++|+.+.+.|-
T Consensus 311 ~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHhhh--ccccceeEeecc
Confidence 98888632 337888888664
No 127
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=4.9e-23 Score=220.88 Aligned_cols=240 Identities=17% Similarity=0.276 Sum_probs=201.3
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeE-EEEecCCCeEEEEEecCCCeEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-LAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~-l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
+.+.||...|..+++.++. .+++++.||++++|+-..++.+. ...+.+|.+-|.. +++.+..+. .+++|+.|.+|.
T Consensus 8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIANSICYAESDKG-RLVVGGMDTTII 84 (745)
T ss_pred EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccc-ceecccCcceeeccceeccccCc-ceEeecccceEE
Confidence 4589999999999977554 88999999999999987766543 2357788888877 888763332 699999999999
Q ss_pred EEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 479 vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
+|. ....++..+.||+..|+++.... ++ .+++||.|.++++|. .++....+.+|...|.+++.-|++ .+++++
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~--~~-~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGE--DG-TLISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCC--cC-ceEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEecc
Confidence 999 88899999999999999998643 33 499999999999994 456667799999999999999988 677777
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1128)
. |..|++|.- ++.+++|.+|.+ .|..+++-++ ..+++++.||.|+.|++ +|+.+..+. +|..-|+++..
T Consensus 159 a----DKtIklWk~--~~~l~tf~gHtD-~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~--ghtn~vYsis~ 227 (745)
T KOG0301|consen 159 A----DKTIKLWKG--GTLLKTFSGHTD-CVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMH--GHTNFVYSISM 227 (745)
T ss_pred C----cceeeeccC--Cchhhhhccchh-heeeeEEecC-CCeEeecCCceEEEEec-cCceeeeee--ccceEEEEEEe
Confidence 4 999999974 889999999988 8999999876 46899999999999999 677666665 45557999998
Q ss_pred cCCCCEEEEEEcCCcEEEEEcc
Q 001190 638 SKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 638 sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
..++..+++++.|++++||+..
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC
Confidence 8888999999999999999864
No 128
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=4.3e-23 Score=211.66 Aligned_cols=267 Identities=13% Similarity=0.225 Sum_probs=214.4
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.+....+.|.+.|+.+.+-|....++|+++..+.|.|||..+-.-... ..+...+...+.||...=+.++|
T Consensus 115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~---------~~~~~~Pdl~L~gH~~eg~glsW 185 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK---------ASGECRPDLRLKGHEKEGYGLSW 185 (422)
T ss_pred eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc---------ccccCCCceEEEeeccccccccc
Confidence 344556679999999999999999999999999999999876432211 00011233469999998888999
Q ss_pred ccC-CCEEEEEeCCCeEEEEEccCCCc----ceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c--CCCe
Q 001190 415 SPD-GNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRK 486 (1128)
Q Consensus 415 spd-g~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~--~g~~ 486 (1128)
++. .-+|++|+.|++|++||+..... +.....+.+|...|..++|++-... +++++++|+.+.||| . +.++
T Consensus 186 n~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 186 NRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred ccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCC
Confidence 994 45888999999999999986543 4555578899999999999997766 799999999999999 6 5666
Q ss_pred EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCce
Q 001190 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1128)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 565 (1128)
.....+|.++|+|++|.|.. +.+||+|+.|++|.+||++.... ...+..|...|..+.|||....+++.+. .|+.
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~r 340 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRR 340 (422)
T ss_pred cccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCc
Confidence 78888999999999999874 68999999999999999988654 4578899999999999998776554443 5999
Q ss_pred EEEEeCCCC--------------ceeeEeccccCCceeEEEEeCCCCEE-EEEECCCcEEEEECCC
Q 001190 566 LVEWNESEG--------------TIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDN 616 (1128)
Q Consensus 566 i~~wd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~ 616 (1128)
+.+||+..- +++..-.||.. .|..+.|+|...++ +++++|+.+.||.+..
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999998642 23355567776 78889999988764 5578999999999853
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=223.23 Aligned_cols=283 Identities=18% Similarity=0.214 Sum_probs=222.6
Q ss_pred CCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc
Q 001190 762 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 762 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1128)
.|....+.++|.|+|..+++++.||.|++|+.......|. . +. .+...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~------------------t----i~--~~g~~v~~ia~-- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE------------------T----ID--ISGELVSSIAC-- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc------------------h----hh--ccCceeEEEee--
Confidence 3888899999999999999999999999997543211000 0 00 04555666664
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
++.++++++ +++|.+|...+++.-..+..-.-++++++|+. +|+++|.|+.|-.|++-++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 555888887 89999999998876555555566899999999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCC--CCCccEEEEcCC-CCEEEEEecCeEEEEecCCcccc
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT--PTGDTRVQFNAD-QVRMLVVHETQLAIYDASKMERI 997 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~v~~s~d-~~~l~~~~d~~i~v~d~~~~~~~ 997 (1128)
|.|+|.+.+||+.+-||.|++||++++....+...-...... ...+..++|+|+ |.+++.+.|+.|.+|+.......
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 999999999999999999999999998876665433222221 256778999999 55566678999999999999988
Q ss_pred cccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEE
Q 001190 998 RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1077 (1128)
Q Consensus 998 ~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1077 (1128)
..+..... ...+.+++|||.|+|||+++.||.|.|||.++.+. |.-...|.+++|.|+ ++-+
T Consensus 224 f~Lr~~~~-ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----------------~~~~~~Vc~~aw~p~-~n~i 285 (933)
T KOG1274|consen 224 FKLRDKLS-SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----------------HEFKRAVCCEAWKPN-ANAI 285 (933)
T ss_pred eeeccccc-ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----------------ccccceeEEEecCCC-CCee
Confidence 88877654 44499999999999999999999999999998333 122235688999994 5555
Q ss_pred EEEECCCcEEEE
Q 001190 1078 AIGLTDGSVKVM 1089 (1128)
Q Consensus 1078 ~s~~~dg~i~iW 1089 (1128)
-.-..-|..-+|
T Consensus 286 t~~~~~g~~~~~ 297 (933)
T KOG1274|consen 286 TLITALGTLGVS 297 (933)
T ss_pred EEEeeccccccC
Confidence 444444544444
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=5.7e-22 Score=190.61 Aligned_cols=304 Identities=15% Similarity=0.210 Sum_probs=230.1
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP- 416 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 416 (1128)
...-.|.+.|+++.+.|...+|+.+|+.||.|.+||++.-.......+ +.+ ..|. .....-.+|.-.|..+.|-|
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeee
Confidence 344469999999999997555889999999999999976542111000 000 0111 11223678999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCC-eEEEEEecCCCeEEEEe-cCCCeEEEecCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~-~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~ 494 (1128)
|...+.+++.|.+++|||.++-+.... | .-.+.|++-+++|-.. ..++++|..|-.|++.| .+|..-+.+.||.
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~---F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVD---F-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred cCceeecccccceEEEeecccceeeEE---e-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 667888899999999999999665432 2 3456788889988543 33788899899999999 9999999999999
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCC-Cceeeec--------------CCCCeEEEEEEcCCCCeEEEeeec
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYD--------------APGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~--------------~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
+.|.++.|+|.. .-.|++|+.||.|++||++.. ++...+. .|.+.+..++|+.||.++++++.
T Consensus 189 ~~vlaV~Wsp~~-e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt- 266 (397)
T KOG4283|consen 189 DGVLAVEWSPSS-EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT- 266 (397)
T ss_pred CceEEEEeccCc-eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC-
Confidence 999999999875 478999999999999999765 3333333 34457899999999999999986
Q ss_pred cCCCceEEEEeCCCCceeeEecc---ccC---CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcc
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAG---FRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1128)
+..+++|+...|+....-.+ |.+ ..+. +. +.+...++.--.++.+.++++-.+..+..+..+. ..|.
T Consensus 267 ---d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~ 339 (397)
T KOG4283|consen 267 ---DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRIN 339 (397)
T ss_pred ---ccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceee
Confidence 88999999988764322111 111 0111 22 3344445555567999999999999999998774 4899
Q ss_pred eEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 634 RLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 634 ~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
|.++.|+=+...+|..|+.|..|..
T Consensus 340 c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 340 CAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEeecCchhhhhccccCCccccccc
Confidence 9999999999999999999999975
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.1e-23 Score=192.36 Aligned_cols=252 Identities=17% Similarity=0.233 Sum_probs=201.2
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 419 (1128)
.|++.|-.+...--|+ .|||++.|++|+|+.+..+.... ....|.||.++|..++|-. -|.
T Consensus 9 ~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence 5888898888888898 57999999999999998765421 2234999999999999975 799
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCe--EEEecCCCC
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRK--LFNFEGHEA 495 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~--~~~~~~h~~ 495 (1128)
.||+++.||.|.||.-++|+ ..+......|...|++++|.|.+-.+.|++++.||.|.|.+ .+|.- ......|.-
T Consensus 72 iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 99999999999999999884 44445677999999999999998877999999999999998 33222 234467999
Q ss_pred CeEEEeccCCCC-c-----------cEEEEEeccCcEEEEecCCCCc--eeeecCCCCeEEEEEEcCCC----CeEEEee
Q 001190 496 PVYSICPHHKEN-I-----------QFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADG----SRLFSCG 557 (1128)
Q Consensus 496 ~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~i~~~~~s~~g----~~l~~~~ 557 (1128)
.|++++|.|..- | +.|++|+.|..|++|+.+...- ...+..|...|+.+++.|.- ..|++++
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999999987521 2 5799999999999999877532 23478899999999999965 3677777
Q ss_pred eccCCCceEEEEeCCCC--ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECC
Q 001190 558 TSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 615 (1128)
+|+++.||..+.. .-..++...-...+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 231 ----qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 231 ----QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ----CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 6999999987632 11111111122378899999999999999999999999754
No 132
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=5.3e-22 Score=210.50 Aligned_cols=273 Identities=12% Similarity=0.153 Sum_probs=203.2
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
.|..++|-|||..+++.+ +..+.|||...|..+.. +++|.+.|.|++||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 799999999999765543 56899999999998754 999999999999999999999999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCC
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~ 505 (1128)
.|+.|.+|+-+-...++ -.|.+.|.|+.|.|-.. .|+||+- ...-+|....+.+...+ ...++.+++| .
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsL-sdFglWS~~qK~V~K~k-ss~R~~~CsW--t 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSL-SDFGLWSPEQKSVSKHK-SSSRIICCSW--T 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcch-hhccccChhhhhHHhhh-hheeEEEeee--c
Confidence 99999999977644443 26999999999999988 6888874 45668984443332222 2345666666 5
Q ss_pred CCccEEEEEeccCcEEEEecCCCCceeeecC---CCCeEEEEEEcCCCC-----eEEEeeeccCCCceEEEEeCCCCcee
Q 001190 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA---PGHWCTTMLYSADGS-----RLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~---~~~~i~~~~~s~~g~-----~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
.||++++.|-.+|+|.+-+- +++....+.. ...+|.+++|+|... .+++.-. ..++..+.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 68999999999999998754 3444444444 455899999999643 2333321 3334444432 3333
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
..-+...- ...|+.+.++|.+++.||.|+.+.+|.. .|-.+.++.... ..|+.++..|+++.++.|+.||+|..|+
T Consensus 216 gk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeeehhh
Confidence 32221111 3567889999999999999999999985 455555554433 3799999999999999999999999998
Q ss_pred ccc
Q 001190 658 NAI 660 (1128)
Q Consensus 658 ~~~ 660 (1128)
+..
T Consensus 292 l~f 294 (1081)
T KOG1538|consen 292 LIF 294 (1081)
T ss_pred hHH
Confidence 754
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.5e-22 Score=204.25 Aligned_cols=248 Identities=14% Similarity=0.200 Sum_probs=197.7
Q ss_pred cccEEEEEEecCcc-eEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 764 SSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
..+|.+..|.|+|. .+++++....++.||+...+...-+ .+.+ -....+....+|||
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~---------------------~~~g-~e~~~~e~FeVShd 314 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK---------------------PPYG-VEEKSMERFEVSHD 314 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeecccccccccc---------------------CCCC-cccchhheeEecCC
Confidence 35688899999999 7888888889999987643321111 1111 02345778899999
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC--ee
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR--IT 919 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~--V~ 919 (1128)
+++|+..+ .|.|.+....+++.+.+++ -.+.|..++|+. |++.|.+.+.+|.|++||+....++.++... +. -+
T Consensus 315 ~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gt 391 (514)
T KOG2055|consen 315 SNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGT 391 (514)
T ss_pred CCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeec-Ccccee
Confidence 99999988 8999999999999998887 567899999998 8888888889999999999999988888643 33 46
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcc-cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe---cCeEEEEecCCcc
Q 001190 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEK-RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKME 995 (1128)
Q Consensus 920 ~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d~~i~v~d~~~~~ 995 (1128)
+++.|+++.|||+|+..|.|.|||.++-.. ....++.....-. ..|+.++|++|++.|++++ ...+++..+.+..
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt-t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT-TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh-eeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 778889999999999999999999765211 0111121111111 6799999999999999875 6789999999999
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 996 RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 996 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
....|......-+.|+|++|||.|.|+|.|..+|.+.+|.+.
T Consensus 471 VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 471 VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999888876667889999999999999999999999999874
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6e-22 Score=192.93 Aligned_cols=272 Identities=16% Similarity=0.107 Sum_probs=210.7
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g 484 (1128)
....|+++.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.. +++|+.||.|+.+|...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 46789999999999999999999999999999874332 336999999999998765 89999999999999666
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
.....+..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++.. .|+.|++++. +.
T Consensus 85 ~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~r 155 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----DR 155 (323)
T ss_pred CcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----Cc
Confidence 6667778899999999987643 579999999999999998744444444333 6777765 4567777663 88
Q ss_pred eEEEEeCCCCceee-EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC----eeeEEEecCCC-------CCCc
Q 001190 565 FLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGG-------LPNL 632 (1128)
Q Consensus 565 ~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~v 632 (1128)
.+.+||+++..... .....-+..+.++++-|++.-.++++-||.|.+=.++.. .....+..|.. .-+|
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 99999999865433 222222336889999999889999999999998777665 23333443322 2268
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCC
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 698 (1128)
++++|+|-...+++|+.||.|.+||+.+.++ +..+... ...|.+++|+.+|..|+.+.+.
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr-l~q~~~~-----~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNRKR-LKQLAKY-----ETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcchhh-hhhccCC-----CCceEEEEeccCCCeEEEEech
Confidence 9999999989999999999999999988743 3333332 3358899999999999866543
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.8e-22 Score=207.18 Aligned_cols=314 Identities=15% Similarity=0.214 Sum_probs=230.3
Q ss_pred Eecc-CcEEEEecCCCCceeeecCCCC-eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEE
Q 001190 514 TAID-GKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (1128)
Q Consensus 514 ~~~d-g~i~~wd~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 591 (1128)
++.| ..+.+||++++.....+.+... .-.++.. -.+.+++++.. ....+.+|.+..........--. +++.++
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~---~rp~l~vw~i~k~~~~~q~~v~P-g~v~al 87 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQL---KRPLLHVWEILKKDQVVQYIVLP-GPVHAL 87 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecc---cCccccccccCchhhhhhhcccc-cceeee
Confidence 3444 4589999999999888876522 1111111 23357777664 46689999987665544222222 378999
Q ss_pred EEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCC
Q 001190 592 QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (1128)
Q Consensus 592 ~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 671 (1128)
+-+|+|.+++.|+..|.|++|.+.+|.++..+. .|...|+|+.|+-||.++++|+.||.|.+|.+.+-.
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~--aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv--------- 156 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLS--AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV--------- 156 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHH--hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec---------
Confidence 999999999999999999999999999999885 556799999999999999999999999999875421
Q ss_pred ccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCc
Q 001190 672 PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQ 751 (1128)
Q Consensus 672 ~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 751 (1128)
+++.... -..+.+|
T Consensus 157 --------------~a~~~~~------------------------------------------~~p~~~f---------- 170 (476)
T KOG0646|consen 157 --------------SADNDHS------------------------------------------VKPLHIF---------- 170 (476)
T ss_pred --------------ccccCCC------------------------------------------ccceeee----------
Confidence 1100000 0111122
Q ss_pred eeEEEecCCCCCcccEEEEEEecC--cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCC
Q 001190 752 CRLVTMPESTDTSSKVVRLLYTNS--AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 829 (1128)
Q Consensus 752 ~~~~~~~~~~~~~~~i~~l~~s~~--g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1128)
..|.-.|+.+...+. ..++++++.|.++++||+.. |.++....
T Consensus 171 ---------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~----------------------g~LLlti~---- 215 (476)
T KOG0646|consen 171 ---------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL----------------------GVLLLTIT---- 215 (476)
T ss_pred ---------ccCcceeEEEEecCCCccceEEEecCCceEEEEEecc----------------------ceeeEEEe----
Confidence 227788888877765 45799999999999997653 33322222
Q ss_pred CCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCc----------------eEEEEeeCCCC--CeeEEEEcCCCCCEEEE
Q 001190 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF----------------KVMTTFMSPPP--ASTFLAFHPQDNNIIAI 890 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~----------------~~~~~~~~~~~--~v~~l~~s~~d~~~las 890 (1128)
.+..+.+++++|-++.+..|. +|.|.+.++... ..+..+.+|.+ .|+|++++- ||.+|++
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlS 294 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLS 294 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEe
Confidence 678899999999999999997 899888776432 34556778988 899999999 9999999
Q ss_pred EeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEE-EcCCCcEEEEECC
Q 001190 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVS-SGADAQLCVWSID 945 (1128)
Q Consensus 891 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s-~~~Dg~i~iwd~~ 945 (1128)
|+.||.|+|||+.+.++++++..-.++|+.+.+.|-.+-... -.....+-.|++.
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 999999999999999999999877899999999665332222 2233345555544
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.6e-22 Score=203.42 Aligned_cols=287 Identities=12% Similarity=0.213 Sum_probs=232.9
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC-EEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVG 422 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~la 422 (1128)
.++|++|.|+|.-. +|.+|+.|++++||.++....... + .+.--..+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~l---------------q--S~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKL---------------Q--SIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhh---------------e--eeeeccCccceeeecCCCceEEE
Confidence 46799999999988 888899999999999975433211 1 1222456999999999999 899
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccc-cceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
+++.......||+.+++..+. ..+.++. ..+.....+++++ +|+..+..|.|.+-. .+++.+..++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k~-~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKL-KPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeeccccccccc-cCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 999999999999999875432 2344554 4678889999999 899999999999999 8888888876 56789999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCC-eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC------
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE------ 573 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~------ 573 (1128)
+|+ .+++.|++++.+|.|.+||++...+...+...+. .-++++.|++|.++++|+ ..|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS----~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS----DSGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc----CcceEEEeccchhhccCC
Confidence 996 4778999999999999999999988887776655 457888999999999998 489999999653
Q ss_pred CceeeEeccccCCceeEEEEeCCCCEEEEEE--CCCcEEEEECCCCeeeEEEecC-CCCCCcceEEEcCCCCEEEEEEcC
Q 001190 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
.+++..+..... .|+.+.|+++.+.|+.+| .+..+++-.+.+......++.. ...+.|+|++|+|.+.++|+|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 456666655554 788999999999998887 5778999988877665555433 234468999999999999999999
Q ss_pred CcEEEEEcc
Q 001190 651 NGFKILANA 659 (1128)
Q Consensus 651 g~i~iw~~~ 659 (1128)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999864
No 137
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=1.3e-21 Score=199.95 Aligned_cols=293 Identities=16% Similarity=0.243 Sum_probs=223.1
Q ss_pred CCCcEEEEEEeCCCC-cEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCE
Q 001190 343 QGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1128)
Q Consensus 343 h~~~V~~v~fspdg~-~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 420 (1128)
+...|++++|+|... .++|+|...|.|-+||+.+.+.... ....+..|.++|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---------------~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---------------GVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---------------ceEEeccCCccccceEecCCChhh
Confidence 788999999999865 7999999999999999974443322 1234888999999999999 4568
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCCCCeE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~~v~ 498 (1128)
+.+.+.||+|+.-|++++.. ..+..+..-...+.++.|+.+.. .++.+..=|...+|| ..|.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88999999999999998643 22223333556788899999888 577777777999999 55666777888999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCcee----eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC--
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-- 572 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~-- 572 (1128)
+++++|... .+++|++.|++.+|||++...... ....|...|.+..|||+|-.|++.+ .|..|+|||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~----~D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC----QDNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec----cCCceEEeecccc
Confidence 999998754 799999999999999998754433 3456778999999999988888877 49999999984
Q ss_pred --CCceeeEeccccC--C--ceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce-EEEcCCCC-EE
Q 001190 573 --EGTIKRTYAGFRK--K--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSKEGN-LL 644 (1128)
Q Consensus 573 --~~~~~~~~~~~~~--~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-v~~sp~~~-~l 644 (1128)
.-.+..++.-... . ...-..|.|+..++++|-.-..|-|+|-..++.+..+...... .|.+ ..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 2233333321111 0 1223679999999999998889999999999988776544322 3444 47999877 44
Q ss_pred EEEEcCCcEEEEEcc
Q 001190 645 AVTTADNGFKILANA 659 (1128)
Q Consensus 645 ~~~~~dg~i~iw~~~ 659 (1128)
+-++..|.|+||...
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 555567888888643
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.2e-20 Score=206.08 Aligned_cols=204 Identities=17% Similarity=0.218 Sum_probs=152.5
Q ss_pred EEEeccCCCeEEEE-e-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC-cEEEEecccceeeeccc
Q 001190 836 CIALSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-TIHIYNVRVDEVKSKLK 912 (1128)
Q Consensus 836 ~~~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~ 912 (1128)
.++++|+++.++++ . ++.|++||+.+++.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 46677787766554 3 67889999888877776653 23468899999 899998888765 56788998887765543
Q ss_pred ccccCeeEEEEcCCCCEEEE-EcCCCcEEEEECCCCcccceeEEeecCCC-CCCCccEEEEcCCCCEEEEE--ecCeEEE
Q 001190 913 GHQKRITGLAFSTSLNILVS-SGADAQLCVWSIDTWEKRKSVTIHIPAGK-TPTGDTRVQFNADQVRMLVV--HETQLAI 988 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s-~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~s~d~~~l~~~--~d~~i~v 988 (1128)
. ...+.+++|++++++|+. +..++.|++||+.+++....+.......+ .......++|+|++++++++ .++.+.+
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 2 235678999999998854 45689999999999876555443321111 11234578999999986653 4678999
Q ss_pred EecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEE-ecCCcEEEEecCCCceEEEeC
Q 001190 989 YDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT-FCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 989 ~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~-~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
||..+++.+..+.. ...+.+++|+|+|++|+++ ..+|.|.|||+.+++.+..+.
T Consensus 234 ~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 234 VDAKTYEVLDYLLV----GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EECCCCcEEEEEEe----CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99998877655432 4578899999999999886 469999999999999988887
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.6e-20 Score=207.16 Aligned_cols=268 Identities=12% Similarity=0.089 Sum_probs=199.3
Q ss_pred EEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE-EEEeCCCeEEEEEccC
Q 001190 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYAG 437 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~vwd~~~ 437 (1128)
++++++.|+.|.+||+.+++.+.. +.+|. .+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 778999999999999998876542 33343 46789999999987 5667889999999999
Q ss_pred CCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec
Q 001190 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI 516 (1128)
Q Consensus 438 ~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 516 (1128)
++.+.. +..+.. +..++|+|+++. ++++++.|+.|++|| .+++.+..+.. ...+.+++|++ ++.++++++.
T Consensus 63 ~~~~~~---~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIGT---LPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE 134 (300)
T ss_pred CcEEEe---ccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence 876543 333433 567899999984 345566789999999 66777666653 33467788866 6678888887
Q ss_pred cC-cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccC------Ccee
Q 001190 517 DG-KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNG 589 (1128)
Q Consensus 517 dg-~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 589 (1128)
++ .+.+||.++........ ....+..++|+++|+++++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 56778987665544332 2334678999999998876542 478899999999988776643211 1123
Q ss_pred EEEEeCCCCEEEEE-ECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEE-cCCcEEEEEcccC
Q 001190 590 VVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1128)
Q Consensus 590 ~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~ 661 (1128)
.++|+|++++++++ +.++.+.+||..+++.+..+.. ++ .+.+++|+|+|++|+++. .++.|.+||+.++
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV-GQ--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe-CC--CcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 57899999986554 4577899999999887765532 22 578999999999998874 5899999999987
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.8e-23 Score=224.80 Aligned_cols=235 Identities=17% Similarity=0.330 Sum_probs=213.2
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 44588999999987788999999999999999987765554 4789999999999999998 899999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+++.++++.||...+.++.|+| -+.+.++|+.|+.+++||.+..++...+..|...+..+.|+|+|++++.++
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~--- 173 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG--- 173 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC---
Confidence 99999999999999999999988 568999999999999999999999999999999999999999999999987
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
.|..+++||...|+....|..|.. .+..+.|+|..-.++.||.|+++++||+++.+.+...... ...|.+..|+|+
T Consensus 174 -ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 174 -EDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred -Ccceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 379999999999999999999987 7888999999888999999999999999999888776644 457999999999
Q ss_pred CCEEEEEEcC
Q 001190 641 GNLLAVTTAD 650 (1128)
Q Consensus 641 ~~~l~~~~~d 650 (1128)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9999888654
No 141
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=189.31 Aligned_cols=250 Identities=14% Similarity=0.243 Sum_probs=190.4
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE
Q 001190 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1128)
Q Consensus 409 V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~ 487 (1128)
..|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+|| ..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 5889999999999999999 899999999999999 999999
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-cCCCC---eEEEEEEcCCCCeEEEeeeccCCC
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGH---WCTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~---~i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
+.++ ...+|+.+.|+|......+++--.. .-.+-++........- ...+. ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecC-CcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 8887 5779999999998776555554333 2344444432222111 11111 2233468899999999984 8
Q ss_pred ceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe-------ee--EEEecCCCCCCcce
Q 001190 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN-------IL--TSTDAEGGLPNLPR 634 (1128)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~-------~~--~~~~~~~~~~~v~~ 634 (1128)
|.+.++|..+.+++..++-.....|..+.++..|++|+.-+.|+.|+.|+.+.-. +. +.++.--...+-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 9999999999999998887664478889999999999999999999999986311 11 11110001113468
Q ss_pred EEEcCCCCEEEEEEc-CCcEEEEEcccCccccccccC
Q 001190 635 LRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVEN 670 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~ 670 (1128)
++|+.+|.+++.++. ...++||....| .+++.+.+
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG 290 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHG 290 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecC
Confidence 899999999988775 567999998777 55555554
No 142
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=2.3e-21 Score=199.13 Aligned_cols=253 Identities=16% Similarity=0.247 Sum_probs=201.5
Q ss_pred ccCCCcceEEEEEccCCC-EEEEEeCCCeEEEEEccCCCcc-------eeceeecccccceeEEEEecCCCeEEEEEecC
Q 001190 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDL-------RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~vwd~~~~~~~-------~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~ 473 (1128)
...|.+.|..+..-|... .+|+.+..+.|.|||...-... +.-..+.+|.+.-++++|++.... .|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 445999999999999655 5666788899999998643222 222368899998889999998666 7999999
Q ss_pred CCeEEEEec--CCC------eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecC--CCCceeeecCCCCeEEE
Q 001190 474 DKLIKVWEL--SGR------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCTT 543 (1128)
Q Consensus 474 d~~i~vWd~--~g~------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~i~~ 543 (1128)
|++|++||. .+. +...+.+|...|..++|++... .++++++.|+.+.|||++ +.+.......|...+.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 999999992 222 3467889999999999998754 689999999999999999 45556677888999999
Q ss_pred EEEcCCCCeEEEeeeccCCCceEEEEeCCCC-ceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeee-
Q 001190 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNIL- 620 (1128)
Q Consensus 544 ~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~- 620 (1128)
++|+|-+.++++.+. .|++|.+||+++. +.+.++.+|.. .|..+.|+|.. ..|++++.|+.+.|||+..-...
T Consensus 278 ~~fnp~~~~ilAT~S---~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 278 VAFNPFNEFILATGS---ADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EEeCCCCCceEEecc---CCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 999997665554432 4999999999985 47788999987 89999999976 56777889999999998643222
Q ss_pred -----------EEEecCCCCCCcceEEEcCCCC-EEEEEEcCCcEEEEEccc
Q 001190 621 -----------TSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAI 660 (1128)
Q Consensus 621 -----------~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i~iw~~~~ 660 (1128)
..+...||...|..+.|+|+.. .|++.+.|+.+.||....
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2244557778899999999765 567788899999998764
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=3.3e-21 Score=185.39 Aligned_cols=246 Identities=17% Similarity=0.271 Sum_probs=184.1
Q ss_pred CCCcccEEEEEEecCcc-eEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEe
Q 001190 761 TDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 839 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 839 (1128)
.+|.-.|..+.|-|-.. .+.+++-|.++++||..+-.. .+ .+ ..++.|.+-++
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~-------------a~----------~F---~me~~VYsham 151 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE-------------AV----------DF---KMEGKVYSHAM 151 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeeccccee-------------eE----------Ee---ecCceeehhhc
Confidence 34778899999988554 455555699999998653211 00 01 14566777777
Q ss_pred ccCC---CeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-eee------
Q 001190 840 SKND---SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVK------ 908 (1128)
Q Consensus 840 s~dg---~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~------ 908 (1128)
||=. -++|+|. +-.|++.|+.+|.+-.++.+|.+.|.++.|+|...-+||+|+.||.|++||++.. -+.
T Consensus 152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h 231 (397)
T KOG4283|consen 152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH 231 (397)
T ss_pred ChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence 7733 3566666 5679999999999999999999999999999977778899999999999999753 122
Q ss_pred --------ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE
Q 001190 909 --------SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 980 (1128)
Q Consensus 909 --------~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 980 (1128)
+.-.+|.+.|.+++|+.|+.++++++.|..+++|+..+|+....................+. +.+...++.
T Consensus 232 n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~ 310 (397)
T KOG4283|consen 232 NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVL 310 (397)
T ss_pred cCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEE
Confidence 22346888999999999999999999999999999998875433222221111111111123 333333332
Q ss_pred -EecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEec
Q 001190 981 -VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 981 -~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
-.++.+.++.+-++..++.+..| ...|.|.+|-||-+...+|..|+.|..|-.
T Consensus 311 ~p~~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 311 FPNDGSLALLNLLEGSFVRRLSTH---LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EecCCeEEEEEccCceEEEeeecc---cceeeEEeecCchhhhhccccCCccccccc
Confidence 34799999999999999999887 799999999999999999999999999986
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=3.1e-21 Score=205.02 Aligned_cols=288 Identities=14% Similarity=0.133 Sum_probs=209.5
Q ss_pred cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeE
Q 001190 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKI 854 (1128)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i 854 (1128)
...|+.+.++|.|.++|.....+. ++...+. ... .|...|..+.+-|....|++++ |.++
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk--~~~--aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFR---------------LEERQLK--KPL--AHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred cceEEEecCCCceeeecchhhhcc---------------hhhhhhc--ccc--cccceeEeeccCCCceeEEEccCCcee
Confidence 345677778999999986543221 1111111 111 3999999999999666777777 8889
Q ss_pred EEEECCCceEEEE--eeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce--------------------------
Q 001190 855 SLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-------------------------- 906 (1128)
Q Consensus 855 ~vwd~~~~~~~~~--~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-------------------------- 906 (1128)
++||+++.+++.. +.+|.+.|.+++|.+.+...+++|+.||.|.|||+....
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999998877 889999999999999888999999999999999986432
Q ss_pred -eeecccccccCeeE---EEEcCCCCEEEEEcC-CCcEEEEECCCCccccee---EEeecCCC--CCCCccEEEEcCCCC
Q 001190 907 -VKSKLKGHQKRITG---LAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSV---TIHIPAGK--TPTGDTRVQFNADQV 976 (1128)
Q Consensus 907 -~~~~l~~h~~~V~~---l~~s~d~~~l~s~~~-Dg~i~iwd~~~~~~~~~~---~~~~~~~~--~~~~v~~v~~s~d~~ 976 (1128)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+......... .......+ ....+.++..+..|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 11122345556666 666778899999888 999999999875432111 11111111 114566777777788
Q ss_pred EEEE-EecCeEEEEecCCccc--ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCC
Q 001190 977 RMLV-VHETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1053 (1128)
Q Consensus 977 ~l~~-~~d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1053 (1128)
+|++ +.|+.|++|++..... +..+..+.. ..--..-..|||+.+|++|+.|...++|.+.+.+.-..+.
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~-~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------- 356 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLN-SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------- 356 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCccc-ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------
Confidence 8776 6799999999986543 333333221 2222334578999999999999999999999877644333
Q ss_pred cccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC
Q 001190 1054 SVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~ 1094 (1128)
-+|...|++++|.|..-.-++++++|..+++|++..+
T Consensus 357 ----~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 357 ----LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ----hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3677888999999987777999999999999999765
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.6e-20 Score=197.82 Aligned_cols=280 Identities=14% Similarity=0.219 Sum_probs=214.1
Q ss_pred cCCCCCcceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCc
Q 001190 329 SLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407 (1128)
Q Consensus 329 ~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 407 (1128)
++.++|..+...+. |++.|.|+...|.|. +||+|+.||+|+||.+.+|.++.... -.+
T Consensus 384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d~ 442 (733)
T KOG0650|consen 384 DLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FDS 442 (733)
T ss_pred hcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ecc
Confidence 45666777766664 999999999999998 88999999999999999999986411 245
Q ss_pred ceEEEEEccCCC--EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEe----cCCCeEEEEe
Q 001190 408 SVSRVAWSPDGN--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC----GDDKLIKVWE 481 (1128)
Q Consensus 408 ~V~~l~~spdg~--~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~----s~d~~i~vWd 481 (1128)
.|.||+|+|.+. .||++-.. .+.|-+..-|..+....+ .. .|+++ ..|+.+..|.
T Consensus 443 ~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t----------------~e--ll~~~~~~~~p~~~~~~W~ 503 (733)
T KOG0650|consen 443 EIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVGPT----------------KE--LLASAPNESEPDAAVVTWS 503 (733)
T ss_pred eeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhhcch----------------hh--hhhcCCCccCCcccceeec
Confidence 899999999765 45544433 366666554433221000 01 12222 3356778887
Q ss_pred -cCCC----eEEEecCCCCCeEEEeccCCCCccEEEEEecc---CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeE
Q 001190 482 -LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 482 -~~g~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
.+.. -++....|...|..+.||. .|.||++...+ ..|.|.++.....+.-+....+.|.++.|.|...++
T Consensus 504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~l 581 (733)
T KOG0650|consen 504 RASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYL 581 (733)
T ss_pred hhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceE
Confidence 3211 1344556889999999987 56799998664 578899988777777777778889999999999998
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC-eeeEEEecCCCCCCc
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNL 632 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v 632 (1128)
++++ ...|++||+....++..+..... .+..++++|.|..|+.|+.|+.+..+|+.-. ++.+.+..|.. .+
T Consensus 582 fVaT-----q~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~--av 653 (733)
T KOG0650|consen 582 FVAT-----QRSVRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK--AV 653 (733)
T ss_pred EEEe-----ccceEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh--hh
Confidence 8886 67899999999888887776655 7889999999999999999999999999755 45666665544 79
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
..|+|++.-.++++|+.||++.|+-.
T Consensus 654 r~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 654 RSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhccccceeeeecCCCcEEEEee
Confidence 99999999999999999999998853
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=8.5e-21 Score=201.70 Aligned_cols=289 Identities=17% Similarity=0.222 Sum_probs=212.8
Q ss_pred EEEe--CCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC
Q 001190 350 MDFH--PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1128)
Q Consensus 350 v~fs--pdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 427 (1128)
+.|+ |..+++||.+-.||.|.++|......... ..+......|.+.|..+.|-|....|++++.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e-------------e~~lk~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE-------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchh-------------hhhhcccccccceeEeeccCCCceeEEEccCC
Confidence 4454 34567999999999999999865432210 01112356799999999999977789999999
Q ss_pred CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCe-------------------
Q 001190 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRK------------------- 486 (1128)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~------------------- 486 (1128)
.++++||+++++..... .+.||.+.|.+++|.++... .+++|+.||.|.||| .++..
T Consensus 122 sT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 99999999998876543 47799999999999999887 899999999999999 33310
Q ss_pred -------EEEecCCCCCeE----EEeccCCCCccEEEEEec-cCcEEEEecCCCCceee--------ecCC---CCeEEE
Q 001190 487 -------LFNFEGHEAPVY----SICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVD--------YDAP---GHWCTT 543 (1128)
Q Consensus 487 -------~~~~~~h~~~v~----~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~--------~~~~---~~~i~~ 543 (1128)
+.....|...|. .+.| .|...|++++. |+.|+|||++....... +..+ ...+.+
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 111223444443 3443 25578998887 99999999987654432 2222 336788
Q ss_pred EEEcCCCCeEEEeeeccCCCceEEEEeCCCC--ceeeEeccccCCceeE-EEEeCCCCEEEEEECCCcEEEEECCCCeee
Q 001190 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 544 ~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
+.....|.+|++.+. |+.|++|++.+- .++..+.++....+.. -..+|++.++++|+.|...++|.+.+-+.-
T Consensus 277 L~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 277 LILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred EEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 888888999888775 999999999864 3455566654433222 357899999999999999999999876543
Q ss_pred EEEecCCCCCCcceEEEcCC-CCEEEEEEcCCcEEEEEcccC
Q 001190 621 TSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
..+ ..+|...|++++|.|. -.-++++++|..+++|++..+
T Consensus 353 ~~~-l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PAL-LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhh-hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 332 2255668999999883 334667799999999999766
No 147
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=9.2e-20 Score=193.72 Aligned_cols=466 Identities=15% Similarity=0.158 Sum_probs=292.9
Q ss_pred ceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce
Q 001190 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR 531 (1128)
Q Consensus 453 ~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 531 (1128)
.|..++|-|||.+++++. +..+.+|| .+|..+.++++|.+.|++++|+. ||+.+++|+.|..|.+|.-...+ .
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAys~--dGkrFASG~aDK~VI~W~~klEG-~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEG-I 87 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEEcc--CCceeccCCCceeEEEecccccc-e
Confidence 799999999999744443 45799999 99999999999999999999965 88999999999999999654322 2
Q ss_pred eeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEE
Q 001190 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1128)
Q Consensus 532 ~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i 611 (1128)
.. -.|+..|.|+.|+|-...+++++. ...-+|........ ..+. ...+.+++|..||.+++.|-.+|+|.+
T Consensus 88 Lk-YSH~D~IQCMsFNP~~h~LasCsL-----sdFglWS~~qK~V~-K~ks--s~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 88 LK-YSHNDAIQCMSFNPITHQLASCSL-----SDFGLWSPEQKSVS-KHKS--SSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred ee-eccCCeeeEeecCchHHHhhhcch-----hhccccChhhhhHH-hhhh--heeEEEeeecCCCcEEEEeccCceEEe
Confidence 22 347889999999999999999974 34667876543322 1111 125778999999999999999999999
Q ss_pred EECCCCeeeEEEecCCCCCCcceEEEcCCCC-----EEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeee
Q 001190 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-----LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1128)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 686 (1128)
-+....+.+..-...+...+|.+++|+|... .+++.....++.++.+...
T Consensus 159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~------------------------- 213 (1081)
T KOG1538|consen 159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK------------------------- 213 (1081)
T ss_pred ecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-------------------------
Confidence 8764444444434445567899999999532 3444444444444433211
Q ss_pred cccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCccc
Q 001190 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1128)
Q Consensus 687 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1128)
.+ +.-+. -.-.
T Consensus 214 ----~I---------------------------------------------------------gk~r~--------L~Fd 224 (1081)
T KOG1538|consen 214 ----QI---------------------------------------------------------GKDRA--------LNFD 224 (1081)
T ss_pred ----ee---------------------------------------------------------ccccc--------CCCC
Confidence 10 00000 0112
Q ss_pred EEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeE
Q 001190 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1128)
Q Consensus 767 i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1128)
..++.+.++|.+++.|+.|+.+.+|.-. |..+. .+. .....|..++..|+++++
T Consensus 225 P~CisYf~NGEy~LiGGsdk~L~~fTR~-----------------------GvrLG-Tvg--~~D~WIWtV~~~PNsQ~v 278 (1081)
T KOG1538|consen 225 PCCISYFTNGEYILLGGSDKQLSLFTRD-----------------------GVRLG-TVG--EQDSWIWTVQAKPNSQYV 278 (1081)
T ss_pred chhheeccCCcEEEEccCCCceEEEeec-----------------------CeEEe-ecc--ccceeEEEEEEccCCceE
Confidence 2578899999999999999999998532 11111 111 167789999999999999
Q ss_pred EEEe-CCeEEEEECCCceEEEEe-------------------eCCCCCe------eEEEEcCCCCCEEEEEeCCCcEEEE
Q 001190 847 MSAT-GGKISLFNMMTFKVMTTF-------------------MSPPPAS------TFLAFHPQDNNIIAIGTEDSTIHIY 900 (1128)
Q Consensus 847 a~~~-dg~i~vwd~~~~~~~~~~-------------------~~~~~~v------~~l~~s~~d~~~lasg~~dg~v~iw 900 (1128)
+.|. ||+|..|++......... .+....| ..+++- + ..||+-- .-.|.||
T Consensus 279 ~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiY--r-nrLAVQL-peki~iY 354 (1081)
T KOG1538|consen 279 VVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIY--R-NRLAVQL-PEKILIY 354 (1081)
T ss_pred EEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhh--h-hhheecc-cceEEEE
Confidence 9998 999999987532211100 0111111 112221 1 2344433 3357888
Q ss_pred ecccceeeec-ccccccCeeEEEEc---CCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEE--cCC
Q 001190 901 NVRVDEVKSK-LKGHQKRITGLAFS---TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF--NAD 974 (1128)
Q Consensus 901 d~~~~~~~~~-l~~h~~~V~~l~~s---~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~d 974 (1128)
.+.+++...- ++....-+..+.+| -.++.++. +.+..+.-+|...-++.....- +-++.+.. -|-
T Consensus 355 el~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVl-CqekrLqClDF~Gvk~ReW~M~--------S~iRYikV~GGP~ 425 (1081)
T KOG1538|consen 355 ELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVL-CQEKRLQCLDFSGVKEREWQME--------SLIRYIKVIGGPP 425 (1081)
T ss_pred eccccccccchhHHHHHHHhhccceEEEEEcCeEEE-EcccceeeecccchhhhhhhHH--------HHHHhhhhhcCCC
Confidence 8776543211 00000001111111 12334443 3466777777765332221110 11111111 122
Q ss_pred C-CEEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCC
Q 001190 975 Q-VRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLS 1052 (1128)
Q Consensus 975 ~-~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1052 (1128)
| .-|++| .+|.|.-.=+.+.-++..... ...|.|+..+..-+.||+..+.++..++|+.+++.+..-.
T Consensus 426 gREgL~vGlknGqV~kiF~dN~~PiLl~~~----~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEp------ 495 (1081)
T KOG1538|consen 426 GREGLLVGLKNGQVLKIFVDNLFPILLLKQ----ATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEP------ 495 (1081)
T ss_pred CcceeEEEecCCcEEEEEecCCchhheecc----cceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeecC------
Confidence 2 334444 366655444444444433332 6789999999999999999999999999999999887655
Q ss_pred CcccCCCCccceEEEEEecCCCCEEEEEECCCcEE
Q 001190 1053 PSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVK 1087 (1128)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~ 1087 (1128)
.+.+++|+...+.+|+-.+. |.+.
T Consensus 496 ----------g~nSV~wNT~~E~MlcfT~~-g~L~ 519 (1081)
T KOG1538|consen 496 ----------GANSVAWNTQCEDMLCFTGG-GYLN 519 (1081)
T ss_pred ----------CCceEEeeccccceEEEecC-CceE
Confidence 12567888776676655544 4433
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.6e-20 Score=197.80 Aligned_cols=324 Identities=11% Similarity=0.158 Sum_probs=235.4
Q ss_pred cceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeE
Q 001190 398 QASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 398 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i 477 (1128)
+..++.||++.|+||...|.|.+||+|+.||+|+||.+.+|.+++... -.+.|.+++|+|.+...+|+.+-.+ .+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEecC-ce
Confidence 445789999999999999999999999999999999999999998542 3447999999999887455555444 46
Q ss_pred EEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEE----eccCcEEEEecCCC----CceeeecCCCCeEEEEEEcC
Q 001190 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----AIDGKIKAWLYDTM----GSRVDYDAPGHWCTTMLYSA 548 (1128)
Q Consensus 478 ~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----~~dg~i~~wd~~~~----~~~~~~~~~~~~i~~~~~s~ 548 (1128)
.|-+ .-|..+..-.. ...|+++ ..++.+..|.-... ........+...|..+.|..
T Consensus 467 ~ivnp~~G~~~e~~~t---------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPT---------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred EEeCccccchhhhcch---------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 6766 54422211100 0111111 23456777854321 12334556778999999999
Q ss_pred CCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC
Q 001190 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1128)
Q Consensus 549 ~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1128)
+|.+|++...+ ++...|.|.++...+...-|....+ .+.++.|+|...+|++++. ..|+|||+...++++.+...
T Consensus 532 kGDYlatV~~~-~~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg-- 606 (733)
T KOG0650|consen 532 KGDYLATVMPD-SGNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG-- 606 (733)
T ss_pred CCceEEEeccC-CCcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--
Confidence 99999988753 3567899999988777766665554 7889999999999988875 58999999988777766533
Q ss_pred CCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCC
Q 001190 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (1128)
Q Consensus 629 ~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 708 (1128)
...|..++++|.|..|+.|+.|+.+..+|+.-+....+.+..
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-------------------------------------- 648 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-------------------------------------- 648 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh--------------------------------------
Confidence 336899999999999999999999999998766444444332
Q ss_pred CCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeecccee
Q 001190 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ 788 (1128)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 788 (1128)
|...+++++|++.-..+++++.||++
T Consensus 649 ------------------------------------------------------H~~avr~Va~H~ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 649 ------------------------------------------------------HEKAVRSVAFHKRYPLFASGSDDGTV 674 (733)
T ss_pred ------------------------------------------------------hhhhhhhhhhccccceeeeecCCCcE
Confidence 66677888888888888888888888
Q ss_pred EeeeccccCCCCCCceeeeecccee-ccCCCccc--cccccCCCCC----CCeeEEEeccCCCeEEEEe-CCeEEEE
Q 001190 789 KLWKWHRNEQNPSGKATASAVPQHW-LPSSGLLM--ANDVAGVNLE----EAVPCIALSKNDSYVMSAT-GGKISLF 857 (1128)
Q Consensus 789 ~lw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~----~~v~~~~~s~dg~~la~~~-dg~i~vw 857 (1128)
.|+--. +| |+....++ -..+.+ |. ..|..+.|+|..-+|.+++ ||+|++|
T Consensus 675 ~Vfhg~-----------------VY~Dl~qnpliVPlK~L~g--H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 675 IVFHGM-----------------VYNDLLQNPLIVPLKRLRG--HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEEeee-----------------eehhhhcCCceEeeeeccC--ceeecccceEeecccCCCceEEecCCCceEEee
Confidence 887411 11 11111111 011222 43 3488999999999999998 8999998
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=7.6e-22 Score=212.51 Aligned_cols=233 Identities=10% Similarity=0.187 Sum_probs=208.9
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
.|...|.|+..-..++ .+++|+.|..+-+|.+..-..+. -+.+|+.+|.|+.|+++..+|
T Consensus 26 ~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Ll 85 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLL 85 (825)
T ss_pred hhhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhh
Confidence 3888899999877777 88999999999999986544433 288999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
++|+.+|+|++||++.++.++ +|.||...+..++|+|-+. +.++|+.|+.+++|| ....+.+.+.+|...|..+
T Consensus 86 aagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred cccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEE
Confidence 999999999999999988777 6889999999999999999 789999999999999 7688999999999999999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
.|.| +|.+++++++|.++++||+..++....+..|...+.++.|.|..-+++.|+. |..+++||+++.+.+...
T Consensus 161 ~lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 161 RLSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSG 234 (825)
T ss_pred eecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeecc
Confidence 9976 7899999999999999999999988899999999999999999888888874 999999999998888887
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECC
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGED 606 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~d 606 (1128)
..... .|.+..|++++..+++|...
T Consensus 235 ~~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 235 KPETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CCccC-CceeeeecCCceeeecCchh
Confidence 77655 79999999999988887654
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=9.9e-20 Score=183.81 Aligned_cols=306 Identities=16% Similarity=0.204 Sum_probs=219.3
Q ss_pred EeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
+..+...+|..+.|.+++...+|||+.|..|+||.++.+..-... ........|..|+..|+++.|+|+|
T Consensus 8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred EEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCc
Confidence 334456789999999987767899999999999999765543210 0111224588999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcc--------C-----CCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC
Q 001190 419 NYVGVAFTKHLIQLYSYA--------G-----SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~--------~-----~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g 484 (1128)
..||+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++-|.++++|| ..|
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence 999999999999999876 2 112233446789999999999999999 899999999999999 999
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec--------C-----------CC----CeE
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--------A-----------PG----HWC 541 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--------~-----------~~----~~i 541 (1128)
..+..+.+|...|..++|.| -++++++-+.|...+.+.+.......... . |. ...
T Consensus 156 ~l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eeEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 99999999999999999976 45889998888877666654433222111 0 01 123
Q ss_pred EEEEEcCCCCeEEEeeeccCC-----CceEEEEeCCC-CceeeEeccccCCceeEEEEeC------------------CC
Q 001190 542 TTMLYSADGSRLFSCGTSKDG-----DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDT------------------TQ 597 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~-----~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~------------------~~ 597 (1128)
..++|+|||.++++...--.- -+..++++-.. .++...+.+... ....+.|+| -+
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccc
Confidence 567899999998875421100 12334444332 223334444333 333333332 11
Q ss_pred CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 598 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
-.++.+ ....|++||.++-.++..... -|...++.++|++||..++..+.||...+..++..
T Consensus 313 lvfaiA-t~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 313 LVFAIA-TKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred eEEEEe-ecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 233344 456899999999888777654 34568999999999999999999999888776654
No 151
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5.4e-21 Score=207.83 Aligned_cols=247 Identities=13% Similarity=0.223 Sum_probs=195.1
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEEEEEe
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAF 425 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~ 425 (1128)
+..|.|+.--..+|||++..|.|.+||+... ...+ +...+..|+..|.++.|++ .-.+|++|+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~--~rnk--------------~l~~f~EH~Rs~~~ldfh~tep~iliSGS 153 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS--IRNK--------------LLTVFNEHERSANKLDFHSTEPNILISGS 153 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcc--ccch--------------hhhHhhhhccceeeeeeccCCccEEEecC
Confidence 4566777554558999999999999999762 1110 1124888999999999998 456888999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCCCCeEEEecc
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~~v~~~~~~ 503 (1128)
.||+|++||+...+-.. ++.+....|+++.|+|-..+ .++++.+.|.+++|| ...++...+..|.++|.|+.|+
T Consensus 154 QDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwh 229 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWH 229 (839)
T ss_pred CCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeec
Confidence 99999999999876544 56788899999999996555 899999999999999 5667788999999999999999
Q ss_pred CCCCccEEEEEeccCcEEEEecCCCCceeeecC-CCCeEEEEEEcCCCCeE-EEeeeccCCCceEEEEeCCCCc-eeeEe
Q 001190 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGT-IKRTY 580 (1128)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l-~~~~~~~~~~~~i~~wd~~~~~-~~~~~ 580 (1128)
| ++.+|+||+.|++|+|||+........... ...++.++.|-|+..+. ++++. ..|..|+|||++..- +..++
T Consensus 230 P--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t~ 305 (839)
T KOG0269|consen 230 P--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYATF 305 (839)
T ss_pred C--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeeccccccceee
Confidence 8 678999999999999999986655544433 34589999999987654 44443 258899999998765 45667
Q ss_pred ccccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCCe
Q 001190 581 AGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
..|.. .++.++|.. |...+.+++.||.|..-..+++.
T Consensus 306 ~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 306 LEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eccCc-cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 77776 888888865 44678889999988766555543
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.5e-19 Score=175.62 Aligned_cols=255 Identities=11% Similarity=0.157 Sum_probs=192.5
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCC-cceeceeecccccceeEEEEecC--CCeEEEEEecCCCeE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLI 477 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i 477 (1128)
+..+|.+-|.|+.|.+-|+.+|+|+.|++|+|||.+.+. ........+.|.+.|..+.|.+- |+ .+++++.|+++
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv 85 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTV 85 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCce
Confidence 466899999999999999999999999999999965432 23333357789999999999764 67 89999999999
Q ss_pred EEEec-CC---------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee------eec------
Q 001190 478 KVWEL-SG---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV------DYD------ 535 (1128)
Q Consensus 478 ~vWd~-~g---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~------~~~------ 535 (1128)
.||.. .. ....++......|+.+.|.|..-|-.+++++.||.+|||+.-...... ++.
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 99983 11 123456667788999999999989999999999999999764432221 111
Q ss_pred -CCCCeEEEEEEcCC---CCeEEEeeec-cCCCceEEEEeCCCCc----eeeEeccccCCceeEEEEeCCC----CEEEE
Q 001190 536 -APGHWCTTMLYSAD---GSRLFSCGTS-KDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQ----NHFLA 602 (1128)
Q Consensus 536 -~~~~~i~~~~~s~~---g~~l~~~~~~-~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~----~~l~~ 602 (1128)
.+..+..|+.|+|. ..+|+.++.. ...-+.++||...... .+.++.+|.. +|..++|.|+- ..|++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEE
Confidence 23446788999874 3466766531 0122477888765432 4556777776 89999999964 46888
Q ss_pred EECCCcEEEEECCCCe-----------------eeEEE-ecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 603 VGEDSQIKFWDMDNVN-----------------ILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 603 ~s~dg~i~iwd~~~~~-----------------~~~~~-~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
++.|| |+||++.... .+..+ ...+|...|..+.|+-.|..|++.++||.|++|...
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999 9999987311 12222 244566789999999999999999999999999764
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1e-20 Score=215.70 Aligned_cols=297 Identities=15% Similarity=0.250 Sum_probs=226.9
Q ss_pred EEEEEEeCCCCcEEEEeec----------cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 347 VISMDFHPSHQTLLLVGSS----------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
-..++|||++..++|+|.. +.++.||.+.-..... .+...--.........++|++
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~--------------dlk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS--------------DLKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc--------------cccccccccccccceeeeecc
Confidence 3467899999877888743 3345555443211110 000000112356788999999
Q ss_pred CCCE----EEEEeCCCeEEEEEccC---CCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEE
Q 001190 417 DGNY----VGVAFTKHLIQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1128)
Q Consensus 417 dg~~----las~~~d~~i~vwd~~~---~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~ 488 (1128)
.|.. ||.|..||.|.+||... +.....+.+...|++.|..+.|++.... +|++|+.||.|.||| ..-+.-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 8776 88899999999999876 4444445567889999999999998776 899999999999999 4433333
Q ss_pred Eec--CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCC--eEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 489 NFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 489 ~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
... ...+.|.+++|... ..++|++++.+|++.|||++..+.+..+..+.. .+..++|+|++..-+....+.|+..
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 332 24567999999754 567999999999999999999877777666554 5789999999875544444667788
Q ss_pred eEEEEeCCCC-ceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCC
Q 001190 565 FLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1128)
Q Consensus 565 ~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 642 (1128)
.|.+||++.. ..++++++|.. .+.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .+..+.|+|...
T Consensus 233 viqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P 309 (1049)
T KOG0307|consen 233 VIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNP 309 (1049)
T ss_pred eeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCc
Confidence 9999998864 56778888887 78889999876 7888999999999999999999999886443 789999999655
Q ss_pred -EEEEEEcCCcEEEEEcccCc
Q 001190 643 -LLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 643 -~l~~~~~dg~i~iw~~~~~~ 662 (1128)
.++.++.||.|.|+.+....
T Consensus 310 ~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 310 SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhheeccceeeeeeecCC
Confidence 88899999999999987763
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.7e-19 Score=171.70 Aligned_cols=253 Identities=13% Similarity=0.210 Sum_probs=189.7
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 419 (1128)
+|.+-|.|+.|.+-|++ +|+|+.|++|+|||.+....-. . .....+.|.+.|..+.|-+ =|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W-------~--------~Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTW-------S--------CTSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCce-------E--------EeeeEEecCCcEEEEEecCccccc
Confidence 58899999999999995 6999999999999975543221 1 1123667999999999965 599
Q ss_pred EEEEEeCCCeEEEEEccC------CCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE-----
Q 001190 420 YVGVAFTKHLIQLYSYAG------SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL----- 487 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~------~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~----- 487 (1128)
.+|+++.|+++.||.-.. |..-....++......|+++.|.|.-..+.+++++.||++|||+ .+-..+
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999997631 11122233566778899999999987777999999999999999 433222
Q ss_pred -EEec-------CCCCCeEEEeccCCCC-ccEEEEEecc-----CcEEEEecCCCCcee----eecCCCCeEEEEEEcCC
Q 001190 488 -FNFE-------GHEAPVYSICPHHKEN-IQFIFSTAID-----GKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSAD 549 (1128)
Q Consensus 488 -~~~~-------~h~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~~wd~~~~~~~~----~~~~~~~~i~~~~~s~~ 549 (1128)
..+. .+..+..|+.|+++.- ..+|+.|+.+ +.++||.......+. ++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 2222 3556677888875432 2467777655 589999877665332 56678889999999996
Q ss_pred C----CeEEEeeeccCCCceEEEEeCCCC--------------------ceeeEeccccCCceeEEEEeCCCCEEEEEEC
Q 001190 550 G----SRLFSCGTSKDGDSFLVEWNESEG--------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1128)
Q Consensus 550 g----~~l~~~~~~~~~~~~i~~wd~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~ 605 (1128)
- ..|++++ +|| |+||.+... +.+..+.+|.. .|..+.|+-.|..|.+.|.
T Consensus 235 ~Gr~y~~lAvA~----kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 235 IGRSYHLLAVAT----KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cCCceeeEEEee----cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 3 3566666 477 999998731 23344566665 8999999999999999999
Q ss_pred CCcEEEEECCC
Q 001190 606 DSQIKFWDMDN 616 (1128)
Q Consensus 606 dg~i~iwd~~~ 616 (1128)
||.|++|...-
T Consensus 309 DG~VRLWkany 319 (361)
T KOG2445|consen 309 DGCVRLWKANY 319 (361)
T ss_pred Cceeeehhhhh
Confidence 99999998653
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=7.4e-20 Score=186.87 Aligned_cols=244 Identities=14% Similarity=0.135 Sum_probs=190.2
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceecee------------------ecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ------------------IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~------------------~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
.|+|+|.|+.|..|.|||+.-...+.+..+ -.+|+..|.+++|..+-+. +|+|||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 378999999999999999864333222222 2379999999999988777 899999999999
Q ss_pred EEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 479 vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
+|| .+|++...+..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|-.++|.|.....+.++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 999 9999999999999999999999874 57999999999999999985332222222345688999999877666666
Q ss_pred eccCCCceEEEEeCCCC-ceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceE
Q 001190 558 TSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1128)
. .+|.|+-+|++.. +++.++..|.+ .|.++++++.- ..+++++.|+.|++|++............-..+...|.
T Consensus 349 t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 349 T---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred c---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 5 5999999999975 89999999998 89999998765 56778999999999998765543322221222345677
Q ss_pred EEcCCC-CEEEEEEcCCcEEEEEcccCccccc
Q 001190 636 RFSKEG-NLLAVTTADNGFKILANAIGLRSLR 666 (1128)
Q Consensus 636 ~~sp~~-~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1128)
++.|+- -.++.|+..+.++|||+.+.....+
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 788854 4677888888899999988744333
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=7.3e-20 Score=188.34 Aligned_cols=294 Identities=13% Similarity=0.218 Sum_probs=215.4
Q ss_pred CCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcce-EEEeeccceeEeeeccccCCCCCCceeeeeccc
Q 001190 733 DVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQ 811 (1128)
Q Consensus 733 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~ 811 (1128)
+....+++||+........+...+ ....+.++.|...... ++..+.|..+++|.-...
T Consensus 9 S~gd~~kl~D~s~~~~~~~~~~~t------~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--------------- 67 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEYVHQT------AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--------------- 67 (673)
T ss_pred ccCCceEEeecccccCccccccCC------CCCcceeeeccccceEEEeecCCceeEEEecccCC---------------
Confidence 333788999987654443332221 2223888888877742 334456889999863321
Q ss_pred eeccCCCcc-ccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEE
Q 001190 812 HWLPSSGLL-MANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 889 (1128)
Q Consensus 812 ~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la 889 (1128)
++.+ +.... ....-.|++......|+++|+ .+.|+|||+....+.+.+++|...|+++.|.- ...+||
T Consensus 68 -----~~~Vp~~~k~----~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiA 137 (673)
T KOG4378|consen 68 -----TPEVPRVRKL----TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIA 137 (673)
T ss_pred -----CCccceeecc----ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeE
Confidence 1110 00011 122344555555558888888 89999999998888889999999999999998 788999
Q ss_pred EEeCCCcEEEEecccceeeeccccccc-CeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCcc
Q 001190 890 IGTEDSTIHIYNVRVDEVKSKLKGHQK-RITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDT 967 (1128)
Q Consensus 890 sg~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 967 (1128)
+++..|.|.|-.+.++.....|...++ .|.-+.|++..+ +|.+++.+|.|.+||+...... .+....| ..+..
T Consensus 138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~~~~~~H-sAP~~ 212 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----FHASEAH-SAPCR 212 (673)
T ss_pred EeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----cchhhhc-cCCcC
Confidence 999999999999999988878875534 455899999877 5567899999999999885432 2222223 38889
Q ss_pred EEEEcCCCCEEEE--EecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEe
Q 001190 968 RVQFNADQVRMLV--VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 968 ~v~~s~d~~~l~~--~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1045 (1128)
.|+|+|....|++ |-|..|.+||+...+....+.. ..+...++|+++|.+|+.|...|.|..||+.....-...
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred cceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence 9999998877766 4599999999998877777665 688999999999999999999999999999865432222
Q ss_pred CCCCCCCCcccCCCCccceEEEEEecCCCCEEEE
Q 001190 1046 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1079 (1128)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 1079 (1128)
. +.|...|++++|-|. + .+++
T Consensus 289 ~-----------sah~~sVt~vafq~s-~-tvlt 309 (673)
T KOG4378|consen 289 R-----------SAHDASVTRVAFQPS-P-TVLT 309 (673)
T ss_pred e-----------eecccceeEEEeeec-c-eeee
Confidence 2 367777899999984 3 4443
No 157
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1e-19 Score=197.99 Aligned_cols=296 Identities=12% Similarity=0.150 Sum_probs=222.5
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVG 422 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la 422 (1128)
+....++...++-..++..| .....|+.+....... ++.+.. ..-..-...+..|.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~--~~~~~~----------k~kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSE--KCNHRF----------KTKQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCc--ceeeec----------ccccceeeehhhcccccchhhhhe
Confidence 34567777778876554444 3467777765543221 111100 00001122455677875 678999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~ 501 (1128)
+++.+|.|.+||+.....-+....|..|...|++++|++-..+ +|+|||.||+|++|| ...+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222333368899999999999998777 899999999999999 88888888888899999999
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCC-ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
|+|.. +..++++.+.|.+++||++... ....+..|.++|.++.|+|++.+|++||. |+.|+|||..+.+.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99875 6799999999999999998654 45678899999999999999999999985 999999999987766666
Q ss_pred ccccCCceeEEEEeCCCCE-EEEEE--CCCcEEEEECCCCe-eeEEEecCCCCCCcceEEEcC-CCCEEEEEEcCCcEEE
Q 001190 581 AGFRKKSNGVVQFDTTQNH-FLAVG--EDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~-l~~~s--~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~i 655 (1128)
.-+...++.++.|-|+..+ |++++ .|-.|+|||+...- +..++..| ...++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHH
Confidence 6666668999999998754 55554 68899999997543 34445443 44788899966 5667889999998876
Q ss_pred EEcccC
Q 001190 656 LANAIG 661 (1128)
Q Consensus 656 w~~~~~ 661 (1128)
-.+.+.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 555544
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=5e-19 Score=173.57 Aligned_cols=300 Identities=13% Similarity=0.203 Sum_probs=206.2
Q ss_pred CCCcccEEEEEEec----CcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeE
Q 001190 761 TDTSSKVVRLLYTN----SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~----~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 836 (1128)
++|..+|.+++|.+ +...+++......+.+|...... +..+........+++....
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D~d~~Esfyt 94 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYADEDHDESFYT 94 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccCCCCCcceEE
Confidence 44778889998873 33344444455577888765321 0000001111136677777
Q ss_pred EEeccCC----CeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc
Q 001190 837 IALSKND----SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (1128)
Q Consensus 837 ~~~s~dg----~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 911 (1128)
++|+-|- -++|.++ -|.|+|.|+.++++...+.+|...|..+.+.|.+.+++++++.|.+|++|++++..++..+
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 8887643 3666666 7999999999999999999999999999999988899999999999999999999998775
Q ss_pred ---cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEe------------------e-----cCCCCCCC
Q 001190 912 ---KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH------------------I-----PAGKTPTG 965 (1128)
Q Consensus 912 ---~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~------------------~-----~~~~~~~~ 965 (1128)
.||.+.|.++.|+.+|.+++|+|.|.+|++|++...+-...+... . .+.|. ..
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr-ny 253 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR-NY 253 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc-ch
Confidence 679999999999999999999999999999999843221111110 0 00111 23
Q ss_pred ccEEEEcCCCCEEEE-EecCeEEEEecC-CcccccccccCC----------CCCCCeEEEEEe--eCCCEEEEEecCCcE
Q 001190 966 DTRVQFNADQVRMLV-VHETQLAIYDAS-KMERIRQWTPQD----------ALSAPISCAVYS--CNSQLVFATFCDGNI 1031 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~-~~d~~i~v~d~~-~~~~~~~~~~~~----------~h~~~v~~l~~s--~dg~~l~t~~~dg~i 1031 (1128)
|-++.|- |.++++ +.++.|..|... -.+.+....... .....|+-+.|+ +-++.||.|...|.|
T Consensus 254 VDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v 331 (385)
T KOG1034|consen 254 VDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV 331 (385)
T ss_pred HHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE
Confidence 3333333 345565 448899999872 222222111110 114456666655 457899999999999
Q ss_pred EEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1032 GVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1032 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
++||++..+........ .+.....|.-.+|+. |+.+|+...+|++|.-||.-
T Consensus 332 ~vwdL~~~ep~~~ttl~--------~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCTTLT--------HSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEECCCCCCccCceEE--------eccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 99999987763211100 112334567788888 79999999999999999854
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=4e-16 Score=182.72 Aligned_cols=290 Identities=27% Similarity=0.438 Sum_probs=220.4
Q ss_pred EeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCc-eecccccccccccccCccccceeccCCC-cceEEEEE-c
Q 001190 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAW-S 415 (1128)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s 415 (1128)
....|...|.++.|.+++. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 4456999999999999998 67778889999999998876 3221 33322 47777777 8
Q ss_pred cCCC-EEEEEeC-CCeEEEEEccC-CCcceeceeecccccceeEEEEecCCCeEEEEEecC-CCeEEEEe-cCCCeEEEe
Q 001190 416 PDGN-YVGVAFT-KHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNF 490 (1128)
Q Consensus 416 pdg~-~las~~~-d~~i~vwd~~~-~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~-d~~i~vWd-~~g~~~~~~ 490 (1128)
+++. .++..+. |+.+.+|+... ..... .+..|...|..++|+|++. .+++++. |+.+++|+ ..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 99999999987 44333 5779999999999999999 6788875 99999999 668889999
Q ss_pred cCCCCCeEEEeccCCCCcc-EEEEEeccCcEEEEecCCCCcee-eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 491 EGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
.+|...|.+++|++ ++. .+++++.|+.|++||...+.... .+..+.... ...|++++..+++++ .++.+++
T Consensus 195 ~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS----SDGTIRL 267 (466)
T ss_pred ccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec----CCCcEEE
Confidence 99999999999984 555 55555999999999887555555 466666654 348999997777666 4999999
Q ss_pred EeCCCCce-eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001190 569 WNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1128)
Q Consensus 569 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 647 (1128)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.+.+++..++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS-SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred eeecCCCcEEEEEecCC-ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence 99987665 44444554 47888999998889999888899999999888776666522223257788883332455555
Q ss_pred -EcCCcEEEEEcccC
Q 001190 648 -TADNGFKILANAIG 661 (1128)
Q Consensus 648 -~~dg~i~iw~~~~~ 661 (1128)
..|+.+.+|+....
T Consensus 347 ~~~d~~~~~~~~~~~ 361 (466)
T COG2319 347 GSDDGTIRLWDLRTG 361 (466)
T ss_pred ecCCCcEEeeecCCC
Confidence 56677777776543
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=2.2e-16 Score=184.92 Aligned_cols=372 Identities=22% Similarity=0.390 Sum_probs=282.8
Q ss_pred ecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC-eEEEecCCCC-CeEEEeccCCCCcc-EEEEEec-cCcEE
Q 001190 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNFEGHEA-PVYSICPHHKENIQ-FIFSTAI-DGKIK 521 (1128)
Q Consensus 447 ~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i~ 521 (1128)
+..|...+..+.|.+.+. .++.++.|+.+.+|+ ..+. .+..+.++.. .+..+.+. ..++. +++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 558999999999999999 788888999999999 5554 6777776443 77777774 44555 5555444 99999
Q ss_pred EEecCC-CCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCC-E
Q 001190 522 AWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-H 599 (1128)
Q Consensus 522 ~wd~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 599 (1128)
+|+... ......+..|...|..++|+|++..++.++. .++.+++|+...+..+..+.+|.. .+.+++++|++. .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 213 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGLL 213 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcceE
Confidence 999987 6777788889999999999999997777752 389999999999899999998776 899999999988 5
Q ss_pred EEEEECCCcEEEEECCCCeeeE-EEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccC
Q 001190 600 FLAVGEDSQIKFWDMDNVNILT-STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1128)
Q Consensus 600 l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (1128)
+++++.|+.|++||...+.... .+..+.. .. ...|+|++..+++++.|+.+++|+..........
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----------- 279 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT----------- 279 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE-----------
Confidence 5555899999999988777776 4554433 32 2289999989999999999999998754210000
Q ss_pred cceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEec
Q 001190 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1128)
Q Consensus 679 ~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (1128)
.
T Consensus 280 ------------------------------------------------------------------------------~- 280 (466)
T COG2319 280 ------------------------------------------------------------------------------L- 280 (466)
T ss_pred ------------------------------------------------------------------------------E-
Confidence 0
Q ss_pred CCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEE
Q 001190 759 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1128)
Q Consensus 759 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 838 (1128)
.+|...+.++.|.|++..+++++.|+.+.+|+...... ..... ...|...+..+.
T Consensus 281 --~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~~~~~~~~~ 335 (466)
T COG2319 281 --SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGHEGPVSSLS 335 (466)
T ss_pred --ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-ecccCCceEEEE
Confidence 11567788889999888888888888899996543211 00000 012556788888
Q ss_pred eccCCCeEEEE-e-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEE-EeCCCcEEEEecccceeeecccccc
Q 001190 839 LSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI-GTEDSTIHIYNVRVDEVKSKLKGHQ 915 (1128)
Q Consensus 839 ~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~ 915 (1128)
+.+++..++.+ . ++.+.+|+.............. .+..+.+++ + ..+.. +..++.+.+|+............+.
T Consensus 336 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (466)
T COG2319 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412 (466)
T ss_pred ECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCC
Confidence 84343566655 3 7889999998877333333222 288999998 7 55555 8899999999999888777766554
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001190 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~ 946 (1128)
..+....+++++..+++++.++.+++|+...
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 413 SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 7899999999999999999999999999988
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=4.4e-18 Score=172.03 Aligned_cols=300 Identities=17% Similarity=0.246 Sum_probs=220.0
Q ss_pred cccEEEEEEecCcc-eEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 764 SSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
..++..+.|.+++. .+++++.|..|++|.+........+..+ .....+.. |...|+++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V--------------~y~s~Ls~--H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKV--------------EYLSSLSR--HTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeE--------------EEeecccC--CcceeEEEEEcCC
Confidence 35688888888877 8999999999999998765432211000 11112333 9999999999999
Q ss_pred CCeEEEEe-CCeEEEEECC--------C--------ceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc
Q 001190 843 DSYVMSAT-GGKISLFNMM--------T--------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~--------~--------~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 905 (1128)
|.+||+|+ +|+|.+|... + ....+.+.+|...|..++|+| ++.++++|+.|..+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 99999998 6889999765 3 334566778999999999999 9999999999999999999999
Q ss_pred eeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEee---c--------------CCCCCCCccE
Q 001190 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI---P--------------AGKTPTGDTR 968 (1128)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~---~--------------~~~~~~~v~~ 968 (1128)
+....+.+|..-|..++|.|-++++++-+.|...+.+++...+......... . +..-..-...
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 9999999999999999999999999999999877777776544333222100 0 0001145678
Q ss_pred EEEcCCCCEEEEEe-----cCe-----EEEEecCCccc-ccccccCCCCCCCeEEEEEee--------C---------CC
Q 001190 969 VQFNADQVRMLVVH-----ETQ-----LAIYDASKMER-IRQWTPQDALSAPISCAVYSC--------N---------SQ 1020 (1128)
Q Consensus 969 v~~s~d~~~l~~~~-----d~~-----i~v~d~~~~~~-~~~~~~~~~h~~~v~~l~~s~--------d---------g~ 1020 (1128)
++|+|||.++++.. ++. .++|+-...+. +..+... ..+...+.|+| + -+
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEeccccccccccccccc
Confidence 99999999999731 333 35555443222 2233222 55666666665 1 13
Q ss_pred EEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1021 LVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1021 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
.++.....+.|+|||.++...++... .-|-..++.++|++ |+..++..|.||-.-+=.++..|
T Consensus 313 lvfaiAt~~svyvydtq~~~P~~~v~-----------nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 313 LVFAIATKNSVYVYDTQTLEPLAVVD-----------NIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eEEEEeecceEEEeccccccceEEEe-----------eeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 44444457789999999998888777 34556679999999 79999999999987665555444
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=3e-18 Score=167.62 Aligned_cols=287 Identities=14% Similarity=0.192 Sum_probs=210.6
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc-------cCCC
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-------PDGN 419 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-------pdg~ 419 (1128)
.-.+.|||||. .+.+-+.|..+.+|++...-.-....... -.+.+..+-.-....|...+|= |+..
T Consensus 52 ~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCcc------ccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 34688999999 55667899999999985321110000000 0000111111124467777774 6788
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeeccccc---ceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeE--EE---
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKL--FN--- 489 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~---~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~--~~--- 489 (1128)
++|+.+.+.-|++||.-+|+....+. .-.|.. .-.+++|+|||. .|++| ....|+++| ..|+.. ..
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfaG-ykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFAG-YKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEeec-ccceEEEeeccCCCCCCcchhhhh
Confidence 99999999999999999998655432 223544 345899999999 56654 578999999 556532 11
Q ss_pred --ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 490 --FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 490 --~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
-.+..+-|.+++|+|. +...++.|+...++-+|.-...+....+-+|.+.|+.+.|.+||+.|.+++. .+-.|.
T Consensus 201 ~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 1234667889999986 4568999999999999988888888899999999999999999999999986 688899
Q ss_pred EEeCCC-CceeeEeccccCCceeEE--EEeCCCCEEEEEECCCcEEEEECCC-CeeeEEEecCCCCCCcceEEEcCCCCE
Q 001190 568 EWNESE-GTIKRTYAGFRKKSNGVV--QFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 568 ~wd~~~-~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~ 643 (1128)
.||++. +.++..+..|....-..+ ...|++++|++|+.||.|++||+++ +..+..+..+.. .++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999986 456677777765333344 4468899999999999999999988 776666665543 7999999999888
Q ss_pred EEEEEcC
Q 001190 644 LAVTTAD 650 (1128)
Q Consensus 644 l~~~~~d 650 (1128)
+++++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8887754
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.8e-18 Score=178.16 Aligned_cols=290 Identities=12% Similarity=0.156 Sum_probs=217.1
Q ss_pred cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC-EEEEEeCCCeEEEEEccCCCc-cee
Q 001190 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSND-LRQ 443 (1128)
Q Consensus 366 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las~~~d~~i~vwd~~~~~~-~~~ 443 (1128)
...++|||+...+..-. + .-....-.+.++.|+.... .+|+-+.|..+++|.-..... +..
T Consensus 11 gd~~kl~D~s~~~~~~~--------------~---~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSE--------------Y---VHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCccc--------------c---ccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 45799999876543321 0 0111233499999998764 333445688899997554311 111
Q ss_pred ceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEE
Q 001190 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (1128)
Q Consensus 444 ~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~ 522 (1128)
...+.+. .-.|++...... ++++|+..+.|+||| ....+.+.+.+|...|+++.+.. ...+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEE
Confidence 1122222 223333333334 899999999999999 65556678899999999999865 4579999999999999
Q ss_pred EecCCCCceeeecCC-CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCC-CEE
Q 001190 523 WLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHF 600 (1128)
Q Consensus 523 wd~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 600 (1128)
-.+.++.....+... +..++-+.|++..+.+++... .+|.|.+||+....++..+...+..+...+||+|.. ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 999888777777766 457779999999888776654 489999999999888888776666688889999976 467
Q ss_pred EEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcc
Q 001190 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680 (1128)
Q Consensus 601 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i 680 (1128)
++.|.|..|++||....+....+.... +...++|+++|.+|+.|...|.|..||++..+..+..+..|. ..|
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~-----~sV 296 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD-----ASV 296 (673)
T ss_pred EEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc-----cce
Confidence 778999999999999877777765432 679999999999999999999999999998877777666544 348
Q ss_pred eeeeeeccc
Q 001190 681 ESVALKVSA 689 (1128)
Q Consensus 681 ~~~~~s~~g 689 (1128)
.+++|-+.-
T Consensus 297 t~vafq~s~ 305 (673)
T KOG4378|consen 297 TRVAFQPSP 305 (673)
T ss_pred eEEEeeecc
Confidence 889887765
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=172.53 Aligned_cols=265 Identities=16% Similarity=0.195 Sum_probs=188.6
Q ss_pred CcceEEeecCCCcEEEEEEeCCCC-cEEEEeeccCeEEEEEccCCcee-cccccccccccccCccccceeccCCCcceEE
Q 001190 334 PRTVAVSLHQGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fspdg~-~lla~gs~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
|.--...++|.+.|+-+.-++-|+ .++|+-+..|.|.|||+...-.. ....+.+-+ ....+...+.+|.+.=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 444555667888999998888753 36777788999999998542111 100000000 111233458899999999
Q ss_pred EEEccC-CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC--eE
Q 001190 412 VAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KL 487 (1128)
Q Consensus 412 l~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~--~~ 487 (1128)
++|||- -..|++|..-+.|++|...+|.-..-...+.+|+..|-.++|||.... +|+|||.||+|+||| ..+. ..
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999993 234778888889999999988655444457789999999999998776 899999999999999 6662 22
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC---ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
...+.|.+.|+.+.|+... .+|++|+.||+++|||++..+ ....+..|..+|+++.|+|....++.++. .|.
T Consensus 296 ~~~kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~ 370 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDN 370 (440)
T ss_pred eEeeccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCC
Confidence 3348899999999997643 499999999999999997644 44578889999999999997665444443 589
Q ss_pred eEEEEeCCCCce----------------eeEecccc-CCceeEEEEeCCC-CEEEEEECCCc
Q 001190 565 FLVEWNESEGTI----------------KRTYAGFR-KKSNGVVQFDTTQ-NHFLAVGEDSQ 608 (1128)
Q Consensus 565 ~i~~wd~~~~~~----------------~~~~~~~~-~~~v~~~~~~~~~-~~l~~~s~dg~ 608 (1128)
+|.+||+..-.- .+-+.-|. +..+.-+.|++.- .++++.+.||.
T Consensus 371 QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 371 QITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 999999863211 11122221 1235567777654 46666666653
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=3.8e-18 Score=174.93 Aligned_cols=295 Identities=17% Similarity=0.248 Sum_probs=207.9
Q ss_pred CcccEEEEEEecCcc--eEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 763 TSSKVVRLLYTNSAV--GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~--~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
+.++|++++|.|... .+++|...|.|-+||+.......++. ..+..|..+|.++.|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------------~~f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------------YLFTPHSGPVSGLKFS 243 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------------EEeccCCccccceEec
Confidence 788999999999765 56677778999999985322111111 1112388999999999
Q ss_pred cCC-CeEEEE-eCCeEEEEECCCceEEE--EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee-eecccccc
Q 001190 841 KND-SYVMSA-TGGKISLFNMMTFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQ 915 (1128)
Q Consensus 841 ~dg-~~la~~-~dg~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~ 915 (1128)
|.. ..+++. .||+|++-|++...... .+......+..+.|+. +...++.|..=|...+||++++.. ...+.-|.
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~ 322 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK 322 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhh
Confidence 954 344444 49999999998765433 3332445677888988 555556666667999999997644 67778899
Q ss_pred cCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE-EecCeEEEEecC-
Q 001190 916 KRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDAS- 992 (1128)
Q Consensus 916 ~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~v~d~~- 992 (1128)
..|.+|+++|-.. +|||+|.|++++|||+..-.....-.+... .|. ..|.+..|||++-.|++ +.|..|+|||..
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~Hr-rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHR-RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc-ccc-ceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence 9999999999754 889999999999999986443332112222 222 78999999998776776 569999999984
Q ss_pred ---CcccccccccCCCCCCC--eEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEE
Q 001190 993 ---KMERIRQWTPQDALSAP--ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1067 (1128)
Q Consensus 993 ---~~~~~~~~~~~~~h~~~--v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1128)
.......+.-...+... .....|.||..++++|..-..|-|+|-..++.++.+..+. ....+.-.
T Consensus 401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~----------~~tI~~vn 470 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE----------SSTIPSVN 470 (498)
T ss_pred ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc----------ccccccce
Confidence 33333333322222233 2455799999999999999999999999999888866322 11112346
Q ss_pred EEecCCCCEEEEEECCCcEEEEcC
Q 001190 1068 AAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1068 ~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
.|+|-+..+++-++..|.|.||--
T Consensus 471 ~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 471 EFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred eecccccceeccCCccceEEEEec
Confidence 799964446666777788888843
No 166
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.5e-17 Score=175.71 Aligned_cols=496 Identities=15% Similarity=0.183 Sum_probs=301.9
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC----------CCeEEEEEecCCC
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP----------NKLLCVVTCGDDK 475 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d----------~~~~~l~s~s~d~ 475 (1128)
...-.++.|+|.| +||.|+.. .|.|-|..+-+.+. ++.-|...|+.+.|.|. ...++|+++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3346778999877 67777654 58888887766555 67889999999999763 2346889999999
Q ss_pred eEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCc--cEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC-CC
Q 001190 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI--QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-GS 551 (1128)
Q Consensus 476 ~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~-g~ 551 (1128)
.|.+|| ..+..+..+..|..++..++|.+..+. .+|++.....++.+|+.++++..+.+........++.+.|- .+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 999999 888888999999999999999876543 47777788899999999999999998888888888999884 44
Q ss_pred eEEEeeeccCCCceEEEEeCCC-------CceeeEeccccC----------------Cc--------eeEEEEeCCCCEE
Q 001190 552 RLFSCGTSKDGDSFLVEWNESE-------GTIKRTYAGFRK----------------KS--------NGVVQFDTTQNHF 600 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~-------~~~~~~~~~~~~----------------~~--------v~~~~~~~~~~~l 600 (1128)
.+...+. .|.+.+-+.-. |+..+.-..|.+ .. ...++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 4443332 44454443321 222222222111 00 0114678877777
Q ss_pred EEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCC--CEEEEEEcCCcEEEEEcccCccccccccCCccccccC
Q 001190 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1128)
Q Consensus 601 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 678 (1128)
+.......+.++|++-..++.......+ .+.-+.+-|++ ..|.+...||.+.+|-.......++..
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~---------- 313 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP---------- 313 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc----------
Confidence 7777888999999999999888877665 34556666654 568899999999999765432221111
Q ss_pred cceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEec
Q 001190 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1128)
Q Consensus 679 ~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (1128)
...+.++ + ..++..+...
T Consensus 314 -~~~l~~d--------------------------------------------------------l-----~~Q~~~vr~m 331 (1062)
T KOG1912|consen 314 -NASLSMD--------------------------------------------------------L-----GEQVHVVRPM 331 (1062)
T ss_pred -chhhccc--------------------------------------------------------c-----ccceEEEeec
Confidence 0000000 0 0000000000
Q ss_pred CCCCCcccEEEEEEecC-cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEE
Q 001190 759 ESTDTSSKVVRLLYTNS-AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (1128)
Q Consensus 759 ~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 837 (1128)
..-.+...+..|. ...++..-.+|.+.+|.+..+....++.........-+|...... .-..-.-+
T Consensus 332 ----~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~---------~v~k~~l~ 398 (1062)
T KOG1912|consen 332 ----EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTK---------LVGKTSLI 398 (1062)
T ss_pred ----hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCcee---------ehhhcccc
Confidence 0011111122222 233444445666777766644332222211000000000000000 00000111
Q ss_pred EeccCCCeEEEEeCCe--EEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc
Q 001190 838 ALSKNDSYVMSATGGK--ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ 915 (1128)
Q Consensus 838 ~~s~dg~~la~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 915 (1128)
.+|.||.. +.|. +++--+..... ..... +.-+....-| ++|.|...|+|.++|+.++...+.+..|+
T Consensus 399 ~LS~dg~h----~sGs~~~~~~p~p~~t~--~~~~p-~~n~~~~~~p----LvAvGT~sGTV~vvdvst~~v~~~fsvht 467 (1062)
T KOG1912|consen 399 SLSDDGSH----SSGSTCVRMRPMPELTK--VENDP-GGNTPAGTVP----LVAVGTNSGTVDVVDVSTNAVAASFSVHT 467 (1062)
T ss_pred chhhcCCC----CCCceeeecccCcccce--eecCC-CCCccceeee----eEEeecCCceEEEEEecchhhhhhhcccc
Confidence 22223200 0111 11110000000 01001 1111122222 78999999999999999999999999999
Q ss_pred cCeeEEEEcCCCCEEEEEc----------CCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecC
Q 001190 916 KRITGLAFSTSLNILVSSG----------ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HET 984 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~ 984 (1128)
..|.++.|..... |+|.+ .-+.+.+=|+.+|...... ...+....+|..+..|..|+|+++. .+.
T Consensus 468 ~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR---~l~~~despI~~irvS~~~~yLai~Fr~~ 543 (1062)
T KOG1912|consen 468 SLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFR---GLQKPDESPIRAIRVSSSGRYLAILFRRE 543 (1062)
T ss_pred cceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccc---cCCCCCcCcceeeeecccCceEEEEeccc
Confidence 9999999986644 34332 2245778899988654332 2233344889999999999999996 588
Q ss_pred eEEEEecCCcccccccccCCCCCCC-eEEEEEe
Q 001190 985 QLAIYDASKMERIRQWTPQDALSAP-ISCAVYS 1016 (1128)
Q Consensus 985 ~i~v~d~~~~~~~~~~~~~~~h~~~-v~~l~~s 1016 (1128)
-+.+||+++..+++.... .-+ |+.+.|+
T Consensus 544 plEiwd~kt~~~lr~mS~----a~P~it~leWs 572 (1062)
T KOG1912|consen 544 PLEIWDLKTLRMLRLMSL----ALPLITVLEWS 572 (1062)
T ss_pred chHHHhhccchHHHHHhh----cCCcEEEEeec
Confidence 899999998888877665 344 8999998
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=2.4e-18 Score=168.88 Aligned_cols=252 Identities=17% Similarity=0.246 Sum_probs=185.4
Q ss_pred ceeccCCCcceEEEEEcc-----CCCEEEEEeCCCeEEEEEccCCCcceeceee--cccccceeEEEEecCCC--eEEEE
Q 001190 399 ASIFKDVPISVSRVAWSP-----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI--DAHVGAVNDLAFAYPNK--LLCVV 469 (1128)
Q Consensus 399 ~~~~~~h~~~V~~l~~sp-----dg~~las~~~d~~i~vwd~~~~~~~~~~~~~--~~h~~~v~~l~fs~d~~--~~~l~ 469 (1128)
.++..+|+.+|..++|++ .-..+|+++. ..+.+|+......++.++.. ..|......++|+-|.. ..++|
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la 109 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLA 109 (385)
T ss_pred eehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEE
Confidence 345778999999999985 2345555554 46889988765433332222 24788899999987632 23788
Q ss_pred EecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee---cCCCCeEEEEE
Q 001190 470 TCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTML 545 (1128)
Q Consensus 470 s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~i~~~~ 545 (1128)
.|+.-|.|+|.| .+++....+.+|...|+.+.++|.. .+++++++.|..||+|++++..+...+ .+|...|.++.
T Consensus 110 ~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred eecceeEEEEEecchhhhccceeccCccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence 888999999999 9999999999999999999999874 479999999999999999999998875 45777999999
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec----------------------------cccCCceeEEEEeCCC
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA----------------------------GFRKKSNGVVQFDTTQ 597 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~----------------------------~~~~~~v~~~~~~~~~ 597 (1128)
|+++|.+++++|. |..+.+|++...+....++ -|.+ .|.|+.|- |
T Consensus 189 ~~~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn-yVDCvrw~--g 261 (385)
T KOG1034|consen 189 FSLDGDRIASCGM----DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN-YVDCVRWF--G 261 (385)
T ss_pred EcCCCCeeeccCC----cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc-hHHHHHHH--h
Confidence 9999999999996 9999999998433211111 1111 33344443 4
Q ss_pred CEEEEEECCCcEEEEEC-CCCeee-------------EEEecCCCCCCcceE--EEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 598 NHFLAVGEDSQIKFWDM-DNVNIL-------------TSTDAEGGLPNLPRL--RFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 598 ~~l~~~s~dg~i~iwd~-~~~~~~-------------~~~~~~~~~~~v~~v--~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++++-|-++.|..|.. +-.+.+ ..+... ...|.-+ +|.|-+++||.|...|.|.+||+...
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~--~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP--MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC--ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 68899888899999987 222211 112211 1133444 45677889999999999999999775
No 168
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.1e-16 Score=174.05 Aligned_cols=630 Identities=12% Similarity=0.107 Sum_probs=365.8
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-----
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----- 417 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----- 417 (1128)
|...-.++.|+|.| ++|-|+ ...|.+-|..+-+.+.. +.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEec-CceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 45557889999999 677775 45788888877766543 6668999999999873
Q ss_pred -------CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec---CCCeEEEEEecCCCeEEEEe-cCCCe
Q 001190 418 -------GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1128)
Q Consensus 418 -------g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~---d~~~~~l~s~s~d~~i~vWd-~~g~~ 486 (1128)
.-.||++...|.|.+||...+..+. .+..|..+|.+++|-+ +.+. +|+.-....++.+|+ .+|..
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 2367888889999999999876554 4778999999999976 3433 566666678999999 99998
Q ss_pred EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC------CCceeeecCC-CC------------e-------
Q 001190 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------MGSRVDYDAP-GH------------W------- 540 (1128)
Q Consensus 487 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~------~~~~~~~~~~-~~------------~------- 540 (1128)
..+.........|+.+.|-.. +.+..-+..|.+.+-+.-. .+....+... .. .
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 887776666677788777644 3444445556665554311 1111111111 00 0
Q ss_pred ------EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCC--CEEEEEECCCcEEEE
Q 001190 541 ------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFW 612 (1128)
Q Consensus 541 ------i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iw 612 (1128)
...++|+|.-+.++.... ...+.++|++-..++....-..+ .+..+.+-|++ ..|+++-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 112466776655554443 56799999998888888776665 55567776665 578899999999999
Q ss_pred ECCC----------------CeeeEEEecCCCCCCcceEEEcCC-CCEEEEEEcCCcEEEEEcccCccccccccCCc---
Q 001190 613 DMDN----------------VNILTSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPP--- 672 (1128)
Q Consensus 613 d~~~----------------~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--- 672 (1128)
-.+. ++....+..-... .+......|. ...++.-..+|.+.+|.+.++........+..
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 7654 2222222211111 1222333443 45566666788899999886522111111000
Q ss_pred ----c---ccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCC--CCCcccCCCCCCCCccee
Q 001190 673 ----F---EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM--DKPRTVDDVTDKPKPWQL 743 (1128)
Q Consensus 673 ----~---~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~vw~~ 743 (1128)
+ ...-....-+.++-||..- ++. ......+...............+. -..++.|...|+|.++|+
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~----sGs--~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv 454 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHS----SGS--TCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV 454 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCC----CCc--eeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence 0 0000011112233333110 000 000111111111110111111111 135678899999999998
Q ss_pred EEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccc
Q 001190 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 823 (1128)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1128)
....-.... .-|++.|.++.|......+-.+... . .+........+.+.|+.+|.....
T Consensus 455 st~~v~~~f--------svht~~VkgleW~g~sslvSfsys~-~------------n~~sg~vrN~l~vtdLrtGlsk~f 513 (1062)
T KOG1912|consen 455 STNAVAASF--------SVHTSLVKGLEWLGNSSLVSFSYSH-V------------NSASGGVRNDLVVTDLRTGLSKRF 513 (1062)
T ss_pred cchhhhhhh--------cccccceeeeeeccceeEEEeeecc-c------------cccccceeeeEEEEEccccccccc
Confidence 754332222 2389999999999887744433321 0 000111122445667778775432
Q ss_pred cccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEc-CCC----------------C
Q 001190 824 DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFH-PQD----------------N 885 (1128)
Q Consensus 824 ~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s-~~d----------------~ 885 (1128)
.-.......+|+.+..|.-|+||+..- +.-+.+||+++..+++.+...-.-|+.+.|+ | . .
T Consensus 514 R~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~ 592 (1062)
T KOG1912|consen 514 RGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSE 592 (1062)
T ss_pred ccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhh
Confidence 211224678899999999999999998 7779999998887776665444458888888 3 1 1
Q ss_pred CEEEEEeCCCcEEEEeccc-c------ee-eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEee
Q 001190 886 NIIAIGTEDSTIHIYNVRV-D------EV-KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957 (1128)
Q Consensus 886 ~~lasg~~dg~v~iwd~~~-~------~~-~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~ 957 (1128)
+.++..+ +..+++.+.. + .. ....+.-.-.+..++| .+..|+.|..+|.+.+||+...........
T Consensus 593 n~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~-- 666 (1062)
T KOG1912|consen 593 NLVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDS-- 666 (1062)
T ss_pred ceeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCC--
Confidence 2233333 2233333221 1 11 0001111112333555 467899999999999999876433221111
Q ss_pred cCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 958 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 958 ~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
.+.........+-|....+++-....+-+||.+....+..+.+.+. ...+..+.+......++. .|+++++-.+.
T Consensus 667 --p~~ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~ds-sfrlldvdlc~~~~~~l~--~d~~~Rf~~m~ 741 (1062)
T KOG1912|consen 667 --PDPRAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDS-SFRLLDVDLCEKSPLVLP--NDNKERFRVMP 741 (1062)
T ss_pred --CCchhhheecccCCCCceEEEEecCcceecccccceeeeeeccCCc-ceEEEEEEecccCceecC--CCCceeEEecc
Confidence 1111223333444544455666667899999998888877754432 455556666544444433 34477777666
Q ss_pred CCceEEE
Q 001190 1038 TLRLRCY 1044 (1128)
Q Consensus 1038 ~~~~~~~ 1044 (1128)
.......
T Consensus 742 mks~~ll 748 (1062)
T KOG1912|consen 742 MKSPPLL 748 (1062)
T ss_pred ccCCccc
Confidence 5544333
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=3.9e-18 Score=171.25 Aligned_cols=247 Identities=16% Similarity=0.234 Sum_probs=189.9
Q ss_pred ceEEEEEcc-----CCCEEEEE---eCCCeEEEEEc-cCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 408 SVSRVAWSP-----DGNYVGVA---FTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 408 ~V~~l~~sp-----dg~~las~---~~d~~i~vwd~-~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
.|+.++|.. +.++||.. +..|...|--+ ++|+.-.....+.||+++|..++|+|-..+ .|+|||+|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 455555533 45666653 22233333333 244443444457799999999999997766 899999999999
Q ss_pred EEe-cCC-------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCC
Q 001190 479 VWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1128)
Q Consensus 479 vWd-~~g-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g 550 (1128)
||. -.+ +++..+.||...|--++|||... +.|++++.|.+|.+|++.++.....+. |...|.++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 999 333 34678899999999999999865 699999999999999999999988888 88899999999999
Q ss_pred CeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE----CCCcEEEEECCCCeeeEEEecC
Q 001190 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNILTSTDAE 626 (1128)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~~~~~~~~ 626 (1128)
.++++.+. |..|+|||.++++.+..-.+|.+..-..+.|-.++. +++.+ .+..+-+||..+.+.-..+..-
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe
Confidence 99999984 999999999999999999888886666777888888 55544 5789999998765432222222
Q ss_pred CCCCCcceEEEcCCCCEEEEEE-cCCcEEEEEcccCc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGL 662 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~ 662 (1128)
...+.|.---|.+|.++++.++ .|+.|+.|.+.+..
T Consensus 261 DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 261 DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 2233566667888888877655 59999999998764
No 170
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.81 E-value=1.1e-17 Score=163.86 Aligned_cols=406 Identities=12% Similarity=0.113 Sum_probs=247.9
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE
Q 001190 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1128)
Q Consensus 411 ~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~ 489 (1128)
-++|||+|+|+|+++.- .+.|-|.++-+..+.+ .--..|..+.|..|.-. .|.....|+.|.+|+ ..-+--.+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 36899999999999876 6788888876544321 22456888999999885 566778889999999 66666778
Q ss_pred ecCCCCCeEEEeccCCCCc-cEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 490 FEGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
+.....++.+++|+| || .+|.+...|-+|.+|.+.+..... +......+..++|.|||++.+.+... |-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 887888999999987 55 677778889999999998765543 33344567899999999999988741 11112222
Q ss_pred EeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC--CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEE
Q 001190 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 646 (1128)
..-..-.+++.+..... ..+.+.|+|||+.|++-.. +-.|+.|.. + -.+..++|+|.+++|++
T Consensus 163 ~~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~-------------~-lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYER-------------G-LGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeee-------------c-cceeEEEeccccceEEe
Confidence 22223345555555554 5667899999988765331 222222211 1 14688999999999999
Q ss_pred EEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCC
Q 001190 647 TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMD 726 (1128)
Q Consensus 647 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1128)
|+.|+.+|+.+--+- ++-++++--..-.+.+..-..........+..++..+.+.
T Consensus 228 GsyD~~lrvlnh~tW------------------------k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~- 282 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTW------------------------KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT- 282 (447)
T ss_pred eccchhhhhhceeee------------------------eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC-
Confidence 999999998654332 1111111000000000000000000000000000000000
Q ss_pred CCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceee
Q 001190 727 KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA 806 (1128)
Q Consensus 727 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~ 806 (1128)
|-...+|...+ .+..++..| +++-
T Consensus 283 --------~~~a~~~~~se--------------------~~YE~~~~p-------------v~~~--------------- 306 (447)
T KOG4497|consen 283 --------DLEAHIWEESE--------------------TIYEQQMTP-------------VKVH--------------- 306 (447)
T ss_pred --------ccccCccccch--------------------hhhhhhhcc-------------eeee---------------
Confidence 00001111100 000000000 0000
Q ss_pred eeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeC---CeEEEEECCCceEEEEeeCCCCCeeEEEEcCC
Q 001190 807 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883 (1128)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~ 883 (1128)
.-+..+ +.+ +..-.+.-++||+|..++++-.| +.+.+||+...+....+. ...+|.+..|+|
T Consensus 307 ----------~lkp~t-D~p--nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP- 371 (447)
T KOG4497|consen 307 ----------KLKPPT-DFP--NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP- 371 (447)
T ss_pred ----------cccCCC-CCC--CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-
Confidence 000000 111 13455778999999999999986 559999998877655543 566899999999
Q ss_pred CCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCc
Q 001190 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938 (1128)
Q Consensus 884 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~ 938 (1128)
+...|+.+.....+++|.......+..- +..-.|..+.|.-+|..++-.+.|..
T Consensus 372 ~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 372 GRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 6667777777778999987765555433 23367999999999999999999864
No 171
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.6e-18 Score=177.21 Aligned_cols=255 Identities=12% Similarity=0.133 Sum_probs=182.2
Q ss_pred CCcEEEEeeccCeEEEEEccCCceecccccccccccccC---ccccceeccCCCcceEEEEEccCC-CEEEEEeCCCeEE
Q 001190 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACS---LPFQASIFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQ 431 (1128)
Q Consensus 356 g~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~l~~spdg-~~las~~~d~~i~ 431 (1128)
|+ |+|.|+.|..|.|||+.-...+. ..+.+-.....- .........+|+..|..++|+.+- ..||+|+.|.+|+
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~-P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVL-PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred cc-eEEEeccCceeEEeccccccccc-cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 45 89999999999999986433221 000000000000 000111245899999999998864 5788999999999
Q ss_pred EEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccE
Q 001190 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQF 510 (1128)
Q Consensus 432 vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~ 510 (1128)
+||+.+|++.. ++..|.+.|.+++|.|.... +|++|+.|++|.+.| ..-..........+.|-.++|.+... ..
T Consensus 270 lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se-~~ 344 (463)
T KOG0270|consen 270 LWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE-NS 344 (463)
T ss_pred EEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc-ee
Confidence 99999999877 46689999999999998766 899999999999999 53222222222466788899987643 57
Q ss_pred EEEEeccCcEEEEecCCC-CceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc-cCCce
Q 001190 511 IFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKKSN 588 (1128)
Q Consensus 511 l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-~~~~v 588 (1128)
++++..||+++-+|++.. +..+++..|..+|.++++++.-..+++.+. .++.|.+|++..-......... .-+..
T Consensus 345 f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~~~~~~~~~v~~~~~~~~rl 421 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWKFDVDSPKSVKEHSFKLGRL 421 (463)
T ss_pred EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEeecCCCCcccccccccccce
Confidence 888899999999999987 677899999999999999987665444332 5999999998754432211111 11235
Q ss_pred eEEEEeCCCC-EEEEEECCCcEEEEECCCCeee
Q 001190 589 GVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 589 ~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
.|.++.|+-. .++.||..+.++|||+.+...+
T Consensus 422 ~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 422 HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eecccCCCcceEEEecCccceEEEeecccChhH
Confidence 5666777654 5666788889999999877654
No 172
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=2.3e-18 Score=172.06 Aligned_cols=253 Identities=17% Similarity=0.254 Sum_probs=189.0
Q ss_pred CCCCCeeEEEeccCCCeEEEE--e-CCeEEEEECC----------------CceEEEEeeCCCCCeeEEEEcCCCCCEEE
Q 001190 829 NLEEAVPCIALSKNDSYVMSA--T-GGKISLFNMM----------------TFKVMTTFMSPPPASTFLAFHPQDNNIIA 889 (1128)
Q Consensus 829 ~~~~~v~~~~~s~dg~~la~~--~-dg~i~vwd~~----------------~~~~~~~~~~~~~~v~~l~~s~~d~~~la 889 (1128)
.|.+.+..+..++-|+-.+++ + .|.|.||++. ..+++.++.+|...=.+++|||.....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 377777788777766444443 4 5899999984 23457788899999999999995555677
Q ss_pred EEeCCCcEEEEeccccee---eecccccccCeeEEEEcCCC-CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCC
Q 001190 890 IGTEDSTIHIYNVRVDEV---KSKLKGHQKRITGLAFSTSL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 965 (1128)
Q Consensus 890 sg~~dg~v~iwd~~~~~~---~~~l~~h~~~V~~l~~s~d~-~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 965 (1128)
+|.--+.|++|...+|.- ...|.+|+..|-.++|||.. ..|+|||-||+|+|||+..+......... .|. .-
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k---Ah~-sD 304 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK---AHN-SD 304 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee---ccC-Cc
Confidence 888888999999988742 24577899999999999975 48999999999999999998655544442 222 67
Q ss_pred ccEEEEcCCCCEEEEEe-cCeEEEEecCCcc---cccccccCCCCCCCeEEEEEeeC-CCEEEEEecCCcEEEEecCCCc
Q 001190 966 DTRVQFNADQVRMLVVH-ETQLAIYDASKME---RIRQWTPQDALSAPISCAVYSCN-SQLVFATFCDGNIGVFDADTLR 1040 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~---~~~~~~~~~~h~~~v~~l~~s~d-g~~l~t~~~dg~i~vwd~~~~~ 1040 (1128)
|..+.|+.+-.+|++|+ ||.++|||++..+ .+..+..| ..+|+++.|+|. ...|++++.|..|.+||+..-.
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H---k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH---KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec---cCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 89999999988888875 8999999998544 45555544 899999999984 5577888899999999986421
Q ss_pred e---EEEe--CCCCCCCC-cccCCCCccceEEEEEecCCCCEEEEEECCCcEEEE
Q 001190 1041 L---RCYI--APSTYLSP-SVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM 1089 (1128)
Q Consensus 1041 ~---~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iW 1089 (1128)
- .... ....-+++ -.|-|..+..+..+.|+++.+.++++.+.||- .||
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 1 0000 00111222 22345556677889999999999999999996 444
No 173
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=4.8e-17 Score=169.43 Aligned_cols=229 Identities=14% Similarity=0.112 Sum_probs=168.4
Q ss_pred CCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEE------ecCCCeEEEEEecCCCeE
Q 001190 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~f------s~d~~~~~l~s~s~d~~i 477 (1128)
.|...|.|+.|+.+...+.+++++..+.-||+.+.+ ... +.-...-|....+ -..++.-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~---~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEV---AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhh---hhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 366778899999888777666555545555554432 221 1111111111111 001111157778889999
Q ss_pred EEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 478 ~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
.+-+..|+....+..|.+.+.+-.|++ ||.-|+++++||.|++|.- ++-...++.....+|+|++|.|+.+.++.+.
T Consensus 88 ~il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 88 VILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred EEecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 999999999999999999999999977 6667999999999999973 4445555666777999999999999888875
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1128)
.+.+.+=.+.....+...+.|.+ .|-++.|++..+.+++||+|-..+|||.. |..+..-..+.. +|++++|
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva~ 235 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVAF 235 (737)
T ss_pred -----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeeee
Confidence 56677777777777788888887 89999999999999999999999999975 444544444444 8999999
Q ss_pred cCCCCEEEEEEc
Q 001190 638 SKEGNLLAVTTA 649 (1128)
Q Consensus 638 sp~~~~l~~~~~ 649 (1128)
+|+ ..++.++.
T Consensus 236 npd-~~~~v~S~ 246 (737)
T KOG1524|consen 236 NPE-KDYLLWSY 246 (737)
T ss_pred ccc-cceeeeee
Confidence 999 66666653
No 174
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=4.9e-19 Score=202.17 Aligned_cols=280 Identities=14% Similarity=0.164 Sum_probs=207.7
Q ss_pred CCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcce----EEEeeccceeEeeeccccCCCCCCceeeee
Q 001190 733 DVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG----LLALGSNGVQKLWKWHRNEQNPSGKATASA 808 (1128)
Q Consensus 733 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~----l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~ 808 (1128)
+.+.++.+|.+........+..+.- .....+...++|.+.|.. ++.|..||.|.+|+...-.
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s---~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~----------- 101 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGS---LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII----------- 101 (1049)
T ss_pred ccccccceeeecccCcccccccccc---ccccccceeeeecccCCCccceeeccccCCceEEecchhhc-----------
Confidence 4457777887776544432222211 125567889999998876 6667779999999854210
Q ss_pred ccceeccCCCccccccccCCCCCCCeeEEEeccCCC-eEEEEe-CCeEEEEECCCceEEEEee--CCCCCeeEEEEcCCC
Q 001190 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFKVMTTFM--SPPPASTFLAFHPQD 884 (1128)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~la~~~-dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~d 884 (1128)
.++. .........|.+.|..+.|++.+. +||+|. +|.|.|||+...+.-..+. .....|.+++|....
T Consensus 102 -------~~~~-~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv 173 (1049)
T KOG0307|consen 102 -------ANAS-EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV 173 (1049)
T ss_pred -------cCcc-hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhh
Confidence 0111 000111123999999999999776 889987 8999999998755444332 245679999999877
Q ss_pred CCEEEEEeCCCcEEEEecccceeeeccccccc--CeeEEEEcCCCC-EEEEEcCCC---cEEEEECCCCcccceeEEeec
Q 001190 885 NNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK--RITGLAFSTSLN-ILVSSGADA---QLCVWSIDTWEKRKSVTIHIP 958 (1128)
Q Consensus 885 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~--~V~~l~~s~d~~-~l~s~~~Dg---~i~iwd~~~~~~~~~~~~~~~ 958 (1128)
.++||+++.+|.+.|||++..+.+-.+..|.+ .+..++|+|+.. .|++++.|. .|.+||++.-
T Consensus 174 qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----------- 242 (1049)
T KOG0307|consen 174 SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----------- 242 (1049)
T ss_pred hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-----------
Confidence 88999999999999999999888877776655 467899999864 556665553 4677776541
Q ss_pred CCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCC-CEEEEEecCCcEEEEecC
Q 001190 959 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 959 ~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~t~~~dg~i~vwd~~ 1037 (1128)
...++.+. .|...|.++.|++.+ ++|++++.|+.|.+|+.+
T Consensus 243 -----------------------------------ssP~k~~~---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 243 -----------------------------------SSPLKILE---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred -----------------------------------CCchhhhc---ccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 11223333 348999999999965 899999999999999999
Q ss_pred CCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1038 TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+|+.+..+. ....+...+.|+|.++.++++++-||.|-|+.+....
T Consensus 285 tgEvl~~~p------------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 285 TGEVLGELP------------AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CceEeeecC------------CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999888 4556789999999999999999999999999988664
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.7e-17 Score=162.44 Aligned_cols=284 Identities=13% Similarity=0.134 Sum_probs=198.9
Q ss_pred ccEEEEEEecCcceEEEeeccceeEeeeccccCCCCC-CceeeeeccceeccCCCccccccccCCCCCCCeeEEEec---
Q 001190 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS-GKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS--- 840 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--- 840 (1128)
.-..++-|+|||..+++-+.|..+.+|+++....+.. ...........+.. .....|...+|-
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-------------~eg~tvydy~wYs~M 116 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-------------QEGETVYDYCWYSRM 116 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-------------ccCCEEEEEEeeecc
Confidence 4456789999999999999999999999986543222 11100000000010 123445555553
Q ss_pred ----cCCCeEEEEe-CCeEEEEECCCceEEEEeeC--CCC---CeeEEEEcCCCCCEEEEEeCCCcEEEEec-ccceee-
Q 001190 841 ----KNDSYVMSAT-GGKISLFNMMTFKVMTTFMS--PPP---ASTFLAFHPQDNNIIAIGTEDSTIHIYNV-RVDEVK- 908 (1128)
Q Consensus 841 ----~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~--~~~---~v~~l~~s~~d~~~lasg~~dg~v~iwd~-~~~~~~- 908 (1128)
|+..++|+.+ +.-|++||.-+|+....+.+ |.. ...+++|+| ||..|.+|. ...|++||+ +.|+.-
T Consensus 117 ~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 117 KSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCP 194 (406)
T ss_pred ccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCc
Confidence 5667777777 77799999999999888764 333 356899999 888887654 789999999 444321
Q ss_pred --ec----ccccccCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE
Q 001190 909 --SK----LKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1128)
Q Consensus 909 --~~----l~~h~~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 981 (1128)
.+ -.+..+-|.+++|+|-.. .++.++....+-||.-..+..+. ..-+|. ..|+.++|.+||..|++|
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~-----llggh~-gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ-----LLGGHG-GGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee-----eecccC-CCeeeEEeccCcCeeccc
Confidence 11 123467789999999654 89999999899898877765433 233443 899999999999999998
Q ss_pred e--cCeEEEEecCCcc-cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC-CceEEEeCCCCCCCCcccC
Q 001190 982 H--ETQLAIYDASKME-RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT-LRLRCYIAPSTYLSPSVLN 1057 (1128)
Q Consensus 982 ~--d~~i~v~d~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~ 1057 (1128)
. +..|..||++..+ .+..+..+......-.-....|+|++|++|+.||.|++||+++ |+......
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~----------- 337 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG----------- 337 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc-----------
Confidence 5 8899999999654 4445554432122222344568899999999999999999998 66444443
Q ss_pred CCCccceEEEEEecCCCCEEEEEEC
Q 001190 1058 GSQTVYPLVVAAHPLEPNQFAIGLT 1082 (1128)
Q Consensus 1058 ~~~~~~~~~~~~~p~~~~~l~s~~~ 1082 (1128)
.+...+..++++|. -.++++++.
T Consensus 338 -~~sd~vNgvslnP~-mpilatssG 360 (406)
T KOG2919|consen 338 -NYSDTVNGVSLNPI-MPILATSSG 360 (406)
T ss_pred -cccccccceecCcc-cceeeeccC
Confidence 44556788999994 666666653
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7.7e-17 Score=151.39 Aligned_cols=288 Identities=13% Similarity=0.148 Sum_probs=204.6
Q ss_pred cEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCe
Q 001190 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1128)
Q Consensus 766 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1128)
.|.+-+++|.+++++++..+|.|.+..+..-.. +.. -..|+...... .+|+.++..++|. ..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa----------~~~gk~~iv~e--qahdgpiy~~~f~--d~~ 74 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSA----------EPPGKLKIVPE--QAHDGPIYYLAFH--DDF 74 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---ccc----------CCCCCcceeec--cccCCCeeeeeee--hhh
Confidence 455668899999999999999999998764211 000 01111111112 2499999999997 568
Q ss_pred EEEEeCCeEEEEECCCceE------EEEee-------CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc
Q 001190 846 VMSATGGKISLFNMMTFKV------MTTFM-------SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1128)
Q Consensus 846 la~~~dg~i~vwd~~~~~~------~~~~~-------~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 912 (1128)
|++++||.|+-|....... +.+.. ..-..|+++-+.|..+.++..| .|+.++-||+++|+...+++
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEc
Confidence 8899999999997654322 11111 1234689999999566655555 79999999999999999999
Q ss_pred ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCC--CCccEEEEcCCCCEEEEEecCeEEEEe
Q 001190 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP--TGDTRVQFNADQVRMLVVHETQLAIYD 990 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~v~~v~~s~d~~~l~~~~d~~i~v~d 990 (1128)
||++-|.++.--.....++||++||++|+||.++++..+.+.......-.. ..-.-.+..-+..+|+.|....+.+|.
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwh 233 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWH 233 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEe
Confidence 999999999985556678999999999999999998876664332111110 111124556677799999999999999
Q ss_pred cCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEe
Q 001190 991 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAH 1070 (1128)
Q Consensus 991 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1128)
+++.++...+.. ..++..+.|-. +.+++++..++|.-|.+ +|.+...+... ++..+..+..-+
T Consensus 234 Lrsse~t~vfpi----pa~v~~v~F~~--d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~----------s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 234 LRSSESTCVFPI----PARVHLVDFVD--DCVLIGGEGNHVQSYTL-NGVLQANIPVE----------STACYSASWQTS 296 (325)
T ss_pred ccCCCceEEEec----ccceeEeeeec--ceEEEeccccceeeeee-ccEEEEeccCC----------ccceeeecccCC
Confidence 999999888877 67888888854 47888888899999998 46666655521 233333333334
Q ss_pred cCCCCEEEEEECCCcEEEEc
Q 001190 1071 PLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1071 p~~~~~l~s~~~dg~i~iWd 1090 (1128)
| -++|-.++..+.+.|+.
T Consensus 297 p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 297 P--IKFISIAGFSNKLHILK 314 (325)
T ss_pred c--eEEEEecccceeeeeee
Confidence 4 45677777777887763
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=8.3e-19 Score=191.66 Aligned_cols=279 Identities=18% Similarity=0.269 Sum_probs=217.1
Q ss_pred EeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
..++|..+|.|+.|...|+ ++++|+.|..|+||..+++.++.. ..||.+.|+.++.+.+.
T Consensus 185 rLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNN 244 (1113)
T ss_pred HHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhh
Confidence 3568999999999999998 789999999999999999988865 89999999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEE----ecC-C
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN----FEG-H 493 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~----~~~-h 493 (1128)
.++|+++.|..|++|.+..+.++. .+.||++.|++++|+|-. +.+.||++++||..-..+.. +.. .
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCccc
Confidence 999999999999999999998876 588999999999999853 68889999999943222111 111 1
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCC-eEEEeeeccCCCceEEEEeCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
...+.++.| ..++..++|++.|+.-..|.+..... +...+.-+.++.|-. +.+++- .+..+.+|++.
T Consensus 316 ~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 316 KDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLY 383 (1113)
T ss_pred ccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeecc
Confidence 233445554 33667889999999988886543211 111122222232332 333332 37788999999
Q ss_pred CCceeeEeccccCCceeEEEEeCCCCEEE-EEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCC
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFL-AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 651 (1128)
+|++.+.+.+|.. .+..+.++|-+..++ +++.||...|||+-.|.+++.... ++ ..+....||+||..++...+-|
T Consensus 384 ~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~-gh-~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI-GH-GKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred cchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec-cc-ceeeccccCCCCceEecCCCCC
Confidence 9999999999988 888999999776554 588999999999999988877663 33 3577889999999999999999
Q ss_pred cEEEEEcccC
Q 001190 652 GFKILANAIG 661 (1128)
Q Consensus 652 ~i~iw~~~~~ 661 (1128)
.++|.....+
T Consensus 461 ql~i~g~gqs 470 (1113)
T KOG0644|consen 461 QLYILGTGQS 470 (1113)
T ss_pred ceEEeccCCC
Confidence 9999876544
No 178
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.5e-18 Score=179.10 Aligned_cols=297 Identities=17% Similarity=0.229 Sum_probs=230.7
Q ss_pred EEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 338 AVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 338 ~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
...|. |.+.|+.|.|...|. +|++||.|..|.+|||..++.... ...||...|....|-|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP 195 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIP 195 (559)
T ss_pred hhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccC
Confidence 33444 999999999999999 889999999999999999887543 3678999999999988
Q ss_pred --CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe---
Q 001190 417 --DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--- 490 (1128)
Q Consensus 417 --dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~--- 490 (1128)
+.+.|++++.||.|++=.+.....+.....+..|.++|.-++.-|+... -|.|++.|+.+.-.| ..+.+...+
T Consensus 196 ~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 196 FSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeee
Confidence 5678999999999999887654444433457789999999999999887 799999999999999 555443222
Q ss_pred cCCCC---CeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce------eeec------CCCCeEEEEEEcCCCCeEEE
Q 001190 491 EGHEA---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR------VDYD------APGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 491 ~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~------~~~~------~~~~~i~~~~~s~~g~~l~~ 555 (1128)
..+.. ....++..|.. ...+++++.|..+++||.+..... ..+. .....|++++|+.++.-+++
T Consensus 275 ~~~~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred ccCCccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence 22333 45778887764 458999999999999987654332 1111 22337999999977665555
Q ss_pred eeeccCCCceEEEEeCCC--C----------ceee-EeccccCCc-eeEE-EEeCCCCEEEEEECCCcEEEEECCCCeee
Q 001190 556 CGTSKDGDSFLVEWNESE--G----------TIKR-TYAGFRKKS-NGVV-QFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~~-v~~~-~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
... |-.|+++.-.- | ..+. .++||.+.. |..+ .|.|...++++|+.-|.|.||+..+++.+
T Consensus 354 SYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 354 SYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred eec----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 553 77788885432 2 2233 388887632 4445 46788999999999999999999999999
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
..+.+..+ -|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 430 ~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 430 RFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99987776 7999999999999999999999999986443
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=1.7e-17 Score=166.79 Aligned_cols=236 Identities=13% Similarity=0.203 Sum_probs=183.8
Q ss_pred eeccCCCcceEEEEEcc-CCCEEEEEeCCCeEEEEEccCCCcc----eeceeecccccceeEEEEecCCCeEEEEEecCC
Q 001190 400 SIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d 474 (1128)
..+.||+++|..++|+| +...||+|+.|.+|.||++..+... .....|.||...|--++|+|-..+ .|+|++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 35889999999999999 6778999999999999999755332 233468899999999999998777 78999999
Q ss_pred CeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCC-eEEEEEEcCCCCe
Q 001190 475 KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSR 552 (1128)
Q Consensus 475 ~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~i~~~~~s~~g~~ 552 (1128)
.+|.+|| .+|+.+.++. |.+.|++++|+. ||.+|++.+.|..||+||.++++....-..|.+ .-..+.|-.+|.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 9999999 9999888888 999999999966 788999999999999999999888877655544 566677888998
Q ss_pred EEEeeeccCCCceEEEEeCCCCceeeEe-ccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCee-eEEEecCCCC
Q 001190 553 LFSCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEGGL 629 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~-~~~~~~~~~~ 629 (1128)
+++.+.++-.+..+-+||....+.-..+ .......|..-.+.+|.+.++.+| .|+.|+-|.+.+..+ +..+......
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 7777777777899999997764432222 222222455566788888887766 799999999877653 3333322333
Q ss_pred CCcceEEEcCC
Q 001190 630 PNLPRLRFSKE 640 (1128)
Q Consensus 630 ~~v~~v~~sp~ 640 (1128)
.+-..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 34566777664
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=1.9e-16 Score=164.97 Aligned_cols=270 Identities=16% Similarity=0.197 Sum_probs=189.2
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEE-ccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWE-LAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
.|...|+||.|+.+.. ++.++ .|..+.+|+ +.+..... .++-+.. ++. ..|-++- +..=-.....
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~---~~~p~df-----~pt---~~h~~~r-s~~~g~~~d~ 77 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEV---AKLPDDF-----VPT---DMHLGGR-SSGGGKGSDT 77 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhh---hhCCccc-----CCc---ccccccc-ccCCCCCcce
Confidence 4777889999999987 55555 555555554 43322211 1111100 000 0010000 0000012457
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~ 500 (1128)
++.++.||.+.|.+-.. +.-+ ....|.+.|.+-.|+|||. -|+|.+.||.|++|..+|....++.....+|.|+
T Consensus 78 ~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEeccchHHHHHhhcCceeEEE
Confidence 88889999988877544 2222 4779999999999999999 7999999999999999998877787788899999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
+|.|+.+ ..+++.+ +.+.+=-+...........|.+-|.++.|++..+.+++++ +|...++||.. |+.+..-
T Consensus 152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG----ED~kfKvWD~~-G~~Lf~S 223 (737)
T KOG1524|consen 152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG----EDFRFKIWDAQ-GANLFTS 223 (737)
T ss_pred EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecC----CceeEEeeccc-CcccccC
Confidence 9988654 4555544 5566666677777888899999999999999999999998 59999999964 5555555
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEE
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 655 (1128)
..|.- ++++++|.|+ +.++.++.+ +++ +.. ...+.|..++||+||..+++|+..|.+.+
T Consensus 224 ~~~ey-~ITSva~npd-~~~~v~S~n-t~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 224 AAEEY-AITSVAFNPE-KDYLLWSYN-TAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred Chhcc-ceeeeeeccc-cceeeeeee-eee------------ecC-CCccceEEEEEcCCCceeeccccCceEEE
Confidence 55554 8999999999 555555542 333 111 12346899999999999999999988765
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=5.7e-18 Score=178.53 Aligned_cols=265 Identities=15% Similarity=0.235 Sum_probs=189.4
Q ss_pred eec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 340 SLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 340 ~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
++. |.+.|++++|+|... .|++++.||+|.+|++.....-..+. ..+...+.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~-----------~epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKD-----------VEPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccc-----------eeeeEEEecccCceEEEEecCCc
Confidence 444 999999999999988 78999999999999994321111111 11344699999999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCC-------CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe
Q 001190 419 NYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~-------~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~ 490 (1128)
..+.+|+.||+|+.|++... +.......+.||++.|+.+++++... .|++|+.||+++.|+ ....+ .++
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 99999999999999965421 11112235779999999999999888 799999999999999 44444 334
Q ss_pred cCCC--CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC-------CCeEEEEEEcCCCCeEEEeeeccC
Q 001190 491 EGHE--APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 491 ~~h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------~~~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
.... +--.++.+....- ...++...-+.-.+.+++.......+... ...+..+...|.+.+.+++.
T Consensus 434 ~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h---- 508 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH---- 508 (577)
T ss_pred CCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc----
Confidence 3221 2223444422110 11222222222233333333333332221 12466777888888888776
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
.+..|+++|..++.++.....|.. .++++++.|+|.+|++++.||.+++|.+....++.....
T Consensus 509 ed~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred cCCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 589999999999999999999987 899999999999999999999999999977766655443
No 182
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=3.7e-16 Score=153.25 Aligned_cols=379 Identities=12% Similarity=0.136 Sum_probs=245.9
Q ss_pred EEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEE-ECCCcEEEEECCCCeeeE
Q 001190 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILT 621 (1128)
Q Consensus 543 ~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~ 621 (1128)
-.+|||+|++++++. +-.+.|-|..+.+..+.|..-. .|.-+.|..|..+++++ ..++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 357999999999997 5588999999988877776644 35568888888887775 578899999999888777
Q ss_pred EEecCCCCCCcceEEEcCCCCEEEE-EEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCc
Q 001190 622 STDAEGGLPNLPRLRFSKEGNLLAV-TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1128)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 700 (1128)
.+.. +...+..+.|||||+.+.. ...+-.|.+|.+.+.....-..
T Consensus 86 kIde--g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-------------------------------- 131 (447)
T KOG4497|consen 86 KIDE--GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-------------------------------- 131 (447)
T ss_pred Eecc--CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--------------------------------
Confidence 7764 3447899999999976554 4558889999987752111110
Q ss_pred ceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEE
Q 001190 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1128)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 780 (1128)
....+..++|.|||++.+
T Consensus 132 --------------------------------------------------------------pK~~~kg~~f~~dg~f~a 149 (447)
T KOG4497|consen 132 --------------------------------------------------------------PKTNVKGYAFHPDGQFCA 149 (447)
T ss_pred --------------------------------------------------------------cccCceeEEECCCCceee
Confidence 112235666777777655
Q ss_pred EeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe---CCeEEEE
Q 001190 781 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLF 857 (1128)
Q Consensus 781 ~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~---dg~i~vw 857 (1128)
..+.-......++. .-+-|.+-. .+.. ..-..+.+.|+|||..||+-. +-+|..|
T Consensus 150 i~sRrDCkdyv~i~--------------~c~~W~ll~------~f~~--dT~DltgieWsPdg~~laVwd~~Leykv~aY 207 (447)
T KOG4497|consen 150 ILSRRDCKDYVQIS--------------SCKAWILLK------EFKL--DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY 207 (447)
T ss_pred eeecccHHHHHHHH--------------hhHHHHHHH------hcCC--CcccccCceECCCCcEEEEecchhhheeeee
Confidence 55442111111100 001111111 1111 344567899999999988654 2333333
Q ss_pred ECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC--------------------
Q 001190 858 NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-------------------- 917 (1128)
Q Consensus 858 d~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-------------------- 917 (1128)
.. .-.+..++|+| .+++|++|+.|+.++|.+--+.+...++- |-..
T Consensus 208 e~------------~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 208 ER------------GLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred ee------------ccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhcchhhhc
Confidence 32 24678899999 99999999999999998776665554432 2211
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECC-CCccccee--EEeec-----CCCCCCCccEEEEcCCCCEEEEEe---cCeE
Q 001190 918 ITGLAFSTSLNILVSSGADAQLCVWSID-TWEKRKSV--TIHIP-----AGKTPTGDTRVQFNADQVRMLVVH---ETQL 986 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~Dg~i~iwd~~-~~~~~~~~--~~~~~-----~~~~~~~v~~v~~s~d~~~l~~~~---d~~i 986 (1128)
-.++.|.|.. -...+|... +.-..... .++.. .......+..++|++|..++++-. .+.+
T Consensus 274 ~~cLsf~p~~---------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pnal 344 (447)
T KOG4497|consen 274 HHCLSFTPTD---------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNAL 344 (447)
T ss_pred ccccccCCCc---------cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceE
Confidence 1234444321 112233222 10001111 11111 111125677899999999999965 4679
Q ss_pred EEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEE
Q 001190 987 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1066 (1128)
Q Consensus 987 ~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1128)
-+||+.+.+....+.. ..+|.+..|.|....|+.......+++|...-...++... ..-.+..
T Consensus 345 W~Wdlq~l~l~avLiQ----k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-------------~GF~i~~ 407 (447)
T KOG4497|consen 345 WLWDLQNLKLHAVLIQ----KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-------------KGFNIQK 407 (447)
T ss_pred EEEechhhhhhhhhhh----ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-------------CCceeee
Confidence 9999998887666654 6899999999988888887777889999987655444333 2235688
Q ss_pred EEEecCCCCEEEEEECCCcEE
Q 001190 1067 VAAHPLEPNQFAIGLTDGSVK 1087 (1128)
Q Consensus 1067 ~~~~p~~~~~l~s~~~dg~i~ 1087 (1128)
++|+. ++..++.++.|.--.
T Consensus 408 l~W~~-~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 408 LQWLQ-PGEFIVLCGKDAFCV 427 (447)
T ss_pred EEecC-CCcEEEEEcCCceEE
Confidence 99998 588888888887544
No 183
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=160.18 Aligned_cols=295 Identities=13% Similarity=0.139 Sum_probs=210.1
Q ss_pred EeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecc-cccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
-.++|.+.|+++.||.+|+ +||+|+.|..+++|+++.--..+. +++. ..-..|...|.|++|...
T Consensus 51 D~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~F~~~ 116 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLEFDLE 116 (609)
T ss_pred hhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEEEccC
Confidence 3467999999999999998 889999999999999864322111 1111 123346689999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC-e--EEEecCC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-K--LFNFEGH 493 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~-~--~~~~~~h 493 (1128)
++.|.+|+.+++|..-|+++.+.+... .-....+.|+.+..+|-.. .|++.+.++.|.+|| .... . +..+...
T Consensus 117 N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 117 NRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred CeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 999999999999999999998766532 1122345999999999877 799999999999999 3332 2 2333334
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee-------ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceE
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-------~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i 566 (1128)
......+.|+|... .+|++.+..+-+-+||.+....... +......-.++.|+|.|..+++.-. ...-
T Consensus 194 ~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P 268 (609)
T KOG4227|consen 194 GKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCP 268 (609)
T ss_pred CccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCC
Confidence 45677888888643 6889999999999999876543321 1111222367889999999888753 3344
Q ss_pred EEEeCCCCce-eeEeccccC-----CceeEEEEeCCCCEEEEEECCCcEEEEECCCCe----------------------
Q 001190 567 VEWNESEGTI-KRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---------------------- 618 (1128)
Q Consensus 567 ~~wd~~~~~~-~~~~~~~~~-----~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------------------- 618 (1128)
.+||+-+.++ +..+....+ ..+.+++|-.+ ..+++|+.+-.|++|.+....
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 5678776443 333331111 13455677654 458999999999999874311
Q ss_pred -eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 619 -~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
.+..+. +|..-++.+.|+|...+|++.+..+.+++|.-
T Consensus 348 ~~~~VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 348 KELTVLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ceeEEEe--cccccccceeecCCcceEeccchhhheecccc
Confidence 122233 45557899999999999999999999999964
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=3.6e-17 Score=155.75 Aligned_cols=282 Identities=17% Similarity=0.195 Sum_probs=196.2
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceecc-CCCcceEEEEEccCCCE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~ 420 (1128)
+|.+.|+|+.|-.+++ |.+|..-|.|++|++.+...... +. .|...|+.+.--|+ ..
T Consensus 12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSIPN-DS 69 (323)
T ss_pred cccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeecCC-cc
Confidence 6999999999999997 57899999999999998765432 33 46788999998887 56
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC-----CCeE--EEEEecCCC-eEEEEecCCCeEEE--e
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-----NKLL--CVVTCGDDK-LIKVWELSGRKLFN--F 490 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d-----~~~~--~l~s~s~d~-~i~vWd~~g~~~~~--~ 490 (1128)
|.+-+.|+.+.+|++.-+..+. -|.-.++++-|.+- ++.. .++.-+... .+.+-| -|..... .
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D-~g~~tqv~i~ 142 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD-GGDTTQVQIA 142 (323)
T ss_pred hhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhc-cCccceeEcc
Confidence 7788899999999998765332 35555666666542 1100 111111100 011112 0111111 1
Q ss_pred ----cCCCCCeEEEeccCCC-CccEEEEEeccCcEEEEecCCCCcee----------eecCCCCeEEEEEEcCCCCeEEE
Q 001190 491 ----EGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 491 ----~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~----------~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
.+..+.+.+..+.... ..-++++|-++|.+.+||+.++.... ....|..++.++.|.+.-..=++
T Consensus 143 dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGis 222 (323)
T KOG0322|consen 143 DDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGIS 222 (323)
T ss_pred CchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcC
Confidence 1234556666543222 22356778899999999998874433 33446678999998876555555
Q ss_pred eeeccCCCceEEEEeCCCC--ce-eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCc
Q 001190 556 CGTSKDGDSFLVEWNESEG--TI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~--~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
++. +..+..|++... .+ +.......+..+..+.+-||++.++++|.|+.|+||+.++.+++..+..|.. .|
T Consensus 223 gga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gv 296 (323)
T KOG0322|consen 223 GGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GV 296 (323)
T ss_pred CCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--ce
Confidence 553 556777776533 22 2222223334678899999999999999999999999999999999987764 89
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
++++|+|+..++|.++.|+.|.+|++
T Consensus 297 n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999985
No 185
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.8e-16 Score=165.75 Aligned_cols=238 Identities=15% Similarity=0.153 Sum_probs=163.1
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.||++-|.|++|+.||.+||+|+.|-.+.|||.-..+.+..+. .||.+.|.++.|.|....-.++||..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 3489999999999999999999999999999999999877776643 49999999999999755558999999999999
Q ss_pred EecC-----------CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee----------eecCCC
Q 001190 480 WELS-----------GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPG 538 (1128)
Q Consensus 480 Wd~~-----------g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----------~~~~~~ 538 (1128)
+|.+ ......+..|...|..++..+.. -..+.++++||+|+-+|++...... .+...-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9933 12345667789999988876532 2789999999999999997632111 011111
Q ss_pred CeEEEEEEcCCCC-eEEEeeeccCCCceEEEEeCCCCceeeEeccccC------CceeEE-EEeCCCCEEEEEECCCcEE
Q 001190 539 HWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK------KSNGVV-QFDTTQNHFLAVGEDSQIK 610 (1128)
Q Consensus 539 ~~i~~~~~s~~g~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~-~~~~~~~~l~~~s~dg~i~ 610 (1128)
-...++.++|... +|++|+ .+...++||.+... ..+..... ....|+ -|+|.+- ...
T Consensus 201 ielk~ltisp~rp~~laVGg----sdpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~----- 265 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGG----SDPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNS----- 265 (758)
T ss_pred heeeeeeecCCCCceEEecC----CCchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCc-----
Confidence 2567899999765 555555 37889999964221 11111110 001111 1222110 011
Q ss_pred EEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccc
Q 001190 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (1128)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1128)
.+...... ..++-+.|+|+|.-|.+.-....|+++|+..++....
T Consensus 266 -----~gn~~~~~------~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 266 -----QGNLDRYI------TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred -----ccccccce------eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 11111111 1246688999998888887778999999988754443
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.5e-17 Score=175.35 Aligned_cols=250 Identities=14% Similarity=0.178 Sum_probs=188.1
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEcc-----CCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-----GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~-----~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
.+..|...|+.++|.|-...|++|+.||++++|+++ .+..+.++.+|.+|.++|.|++..+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477899999999999999999999999999999993 3344667778999999999999999999 899999999
Q ss_pred eEEEEe-------cCC----CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC--CCeEE
Q 001190 476 LIKVWE-------LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCT 542 (1128)
Q Consensus 476 ~i~vWd-------~~g----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~i~ 542 (1128)
+|+.|+ .+. .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+... .+-..
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999994 111 2346778999999999998866 4699999999999998755444 222222 22234
Q ss_pred EEEEcCCC-CeEEEeeeccCCCceEEEEeCCCCceeeEecccc------CCceeEEEEeCCCCEEEEEECCCcEEEEECC
Q 001190 543 TMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1128)
Q Consensus 543 ~~~~s~~g-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 615 (1128)
++.+-... ...++.. ..+.-.+.+...+.....+.... ...+..+..+|.....+++.+|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~----~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF----RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhc----ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44443322 1222211 12222234444444444333211 1245667788889999999999999999999
Q ss_pred CCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++.++.....+. ..+.++++.|+|.+|++++.|+.+++|.+...
T Consensus 520 ~~~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 520 TGKILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccchheeecc--ceecceeecCCCceEEeecCCceeehhhccch
Confidence 999998887654 37899999999999999999999999998665
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.5e-15 Score=142.88 Aligned_cols=280 Identities=17% Similarity=0.236 Sum_probs=190.8
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
.|.+-+++|.++ +|+.|..+|.|-+..+..-..-..+ +.-......+.+|+++|..++|. .++|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 467778999999 7899999999999998642111000 00111112357899999999998 45777776
Q ss_pred CCCeEEEEEccCCCc---ceece--eecccc-----cceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCC
Q 001190 426 TKHLIQLYSYAGSND---LRQHS--QIDAHV-----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~---~~~~~--~~~~h~-----~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~ 494 (1128)
||.|+-|..+.... .+... ....|. -.|+++-..|... -++.++.|+.++.|| .+|+..+.++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 49999998864332 11100 111233 3588888888776 355555799999999 9999999999999
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC----------CCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----------GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----------~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
+.|.++.-.. ....+++|++||++|+||.++.+....+... +.+|.+++. +..++++++ ..
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 9999998632 2347889999999999999998887755432 235666664 556898885 56
Q ss_pred eEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCC-CE
Q 001190 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NL 643 (1128)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~ 643 (1128)
.+.+|+++..+....|+-.. .+..+.|. .+.+++++..+.|.-|.+ +|.+....+...+ ...+..|+... +.
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCcc--ceeeecccCCceEE
Confidence 79999999998888776543 46666675 357888888889999987 4544444443322 34444444332 33
Q ss_pred EEEEEcCCcEEEE
Q 001190 644 LAVTTADNGFKIL 656 (1128)
Q Consensus 644 l~~~~~dg~i~iw 656 (1128)
+-.++....+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4444444555443
No 188
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=1.9e-16 Score=150.91 Aligned_cols=308 Identities=14% Similarity=0.165 Sum_probs=197.6
Q ss_pred ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcE
Q 001190 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1128)
Q Consensus 530 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 609 (1128)
..+.+..+...++++.|..+++ |+++. ..|.|.+|++.+.+....++++....+..+..-|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~----~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGL----SVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhccc----ccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 3455667888899999988876 55554 48899999999999998999777667888887776 678899999999
Q ss_pred EEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCC-cEEEEEcccCccccccccCCccccccCcceeeeeecc
Q 001190 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1128)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 688 (1128)
.+|++..+..+..-.. .++++-|.+-. +...+... ....++-+...+ ...... +.-..+.+-++
T Consensus 80 ~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~-------g~~tqv~i~dd 144 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDG-------GDTTQVQIADD 144 (323)
T ss_pred EEEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhhcc-------CccceeEccCc
Confidence 9999988665543321 34455554321 11111100 011111100000 000000 00001111111
Q ss_pred cccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEE
Q 001190 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1128)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1128)
.. .+..+.+.
T Consensus 145 ~~----------------------------------------------------------------------~~Klgsvm 154 (323)
T KOG0322|consen 145 SE----------------------------------------------------------------------RSKLGSVM 154 (323)
T ss_pred hh----------------------------------------------------------------------ccccCcee
Confidence 00 11223333
Q ss_pred EEEEe-cCcc--eEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCe
Q 001190 769 RLLYT-NSAV--GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1128)
Q Consensus 769 ~l~~s-~~g~--~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1128)
+..+. .++. .+++|.++|.+.+||+...+. +.++.....+..... .|..+|.++.|.+.-..
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~-------------~~~~~~~~kv~~~~a--sh~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK-------------IIQLPQSSKVESPNA--SHKQPVLSLDYASSCDR 219 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCce-------------eeccccccccccchh--hccCcceeeeechhhcC
Confidence 33321 1222 356677799999999876421 111111111111222 28899999999865444
Q ss_pred EEEEe-CCeEEEEECCC--ce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 846 VMSAT-GGKISLFNMMT--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 846 la~~~-dg~i~vwd~~~--~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
=++++ +..+..|+++. +. ...+..-....|..+.+-| |++++|++++|+.|+||+.++.+.+..++.|++.|++
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~ 298 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNA 298 (323)
T ss_pred CcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeE
Confidence 45555 67788887753 22 2233333456789999999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEC
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSI 944 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~ 944 (1128)
++|+||...+|.++.|++|.+|++
T Consensus 299 vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999986
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.1e-16 Score=163.66 Aligned_cols=197 Identities=20% Similarity=0.245 Sum_probs=159.6
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEE
Q 001190 876 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 955 (1128)
Q Consensus 876 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~ 955 (1128)
.+++|++ +|..|++|+.||++|||+..+...+.....|...|.++.|||||++|++.+.| ..+||++.+|..+....-
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999 99999999999999999998888888888999999999999999999999999 899999999855443321
Q ss_pred eecCCCCCCCccEEEEcCCC---CEEEEE---ecCeEEEEecCCccc-----ccccccCCCCCCCeEEEEEeeCCCEEEE
Q 001190 956 HIPAGKTPTGDTRVQFNADQ---VRMLVV---HETQLAIYDASKMER-----IRQWTPQDALSAPISCAVYSCNSQLVFA 1024 (1128)
Q Consensus 956 ~~~~~~~~~~v~~v~~s~d~---~~l~~~---~d~~i~v~d~~~~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~t 1024 (1128)
.........+.|+.|+ .+.++. ..+.|+.|++...+. .+..... ...|++++.|+||++++.
T Consensus 226 ----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~---~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 226 ----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR---FKSISSLAVSDDGKFLAL 298 (398)
T ss_pred ----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc---cCcceeEEEcCCCcEEEE
Confidence 1122556778888877 333332 256677666553222 1222211 568999999999999999
Q ss_pred EecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1025 TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1025 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
|+.||.|.|++..+.+.+.... +.|...|+.+.|+| |.+.+++.+.|.+..+..++-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk-----------~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK-----------EAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh-----------hhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999999999888777 68999999999999 689999999999999998775
No 190
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.72 E-value=3.1e-13 Score=153.76 Aligned_cols=150 Identities=20% Similarity=0.302 Sum_probs=127.9
Q ss_pred EEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCe
Q 001190 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1128)
Q Consensus 350 v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 429 (1128)
+.++++.- ++++|+.-+.|.+|++...+.. ..+.||.+.|.++.||-||++++++++|.+
T Consensus 139 ~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p-------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEEL-YIASGSVFGEIIVWKPHEDNKP-------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEE-EEEeccccccEEEEeccccCCc-------------------ceecccCCceEEEEEccCCcEEEEEecCcc
Confidence 44567765 6899999999999998722211 148999999999999999999999999999
Q ss_pred EEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCC-CeEEEeccCCCCc
Q 001190 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA-PVYSICPHHKENI 508 (1128)
Q Consensus 430 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~-~v~~~~~~~~~~~ 508 (1128)
+++|++++++.... +.-+|+++|+.++|.|+ .++|++.|.+.++|+.++..+..+.+|.+ .|+.++... +.
T Consensus 199 iRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~--~~ 270 (967)
T KOG0974|consen 199 IRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI--GV 270 (967)
T ss_pred eeeeecccccccCc--ccccccceeEEEEeccc----eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcC--Cc
Confidence 99999999887663 45699999999999988 49999999999999988888889999865 688888865 45
Q ss_pred cEEEEEeccCcEEEEecCC
Q 001190 509 QFIFSTAIDGKIKAWLYDT 527 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~ 527 (1128)
..++|++.|+.+++|++..
T Consensus 271 ~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEeeccCcchhhhhhhc
Confidence 7899999999999998743
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.8e-16 Score=156.98 Aligned_cols=291 Identities=14% Similarity=0.160 Sum_probs=194.8
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC---CeEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---HWCT 542 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---~~i~ 542 (1128)
.++++-..|+|++|| .+|+.+..++++...++.+.|........+.+++.||+|++||++.......+.... .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 577788899999999 889999999999999999999775456789999999999999999877665443332 3566
Q ss_pred EEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce-eeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCee-
Q 001190 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI- 619 (1128)
Q Consensus 543 ~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~- 619 (1128)
+++..-.++.++++..-...+..|.+||++..+. ++.+...+...|++++|+|.. +.|++||.||.|.+||++....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777667778887765555678899999998765 666655555589999999965 7889999999999999876532
Q ss_pred ---eEEEecCCCCCCcceEEEcCCC-CEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeeccc-ccccc
Q 001190 620 ---LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA-SSAVS 694 (1128)
Q Consensus 620 ---~~~~~~~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~ 694 (1128)
+.++. +...|.++.|..++ +.|.+-+..++..+|+++.+...... ......... ....+. .+++
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~-~~~~~~~~d------~r~~~~~dY~I- 270 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL-ENPDVSADD------LRKEDNCDYVI- 270 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc-cCccchhhh------HHhhhhhhhee-
Confidence 22232 23358899999876 45888888999999999987432221 111000000 000000 0000
Q ss_pred cCCCCcceecccCCCCCcccccCCCCCCCCCCCCcc-cCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEe
Q 001190 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT-VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 773 (1128)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 773 (1128)
.. ....+....+ .++..+...++-+................ .+|..-|+++.|.
T Consensus 271 ---------------------~~---~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~ 325 (376)
T KOG1188|consen 271 ---------------------NE---HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFD 325 (376)
T ss_pred ---------------------ec---ccCCCcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhh
Confidence 00 0001112222 22223444444443211111111112221 3477778899999
Q ss_pred cCcceEEEeeccceeEeeec
Q 001190 774 NSAVGLLALGSNGVQKLWKW 793 (1128)
Q Consensus 774 ~~g~~l~~~~~dg~i~lw~~ 793 (1128)
..+..+.+|+.||.+.+|..
T Consensus 326 ~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 326 VKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccceeeccCCCceEEEEec
Confidence 99999999999999999975
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=1.4e-14 Score=160.75 Aligned_cols=272 Identities=13% Similarity=0.184 Sum_probs=177.7
Q ss_pred EEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe-CCCeEEEEEcc
Q 001190 359 LLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYA 436 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~vwd~~ 436 (1128)
++++...++.|.+|++.+ |+.... ..+ .+.+....++++||+++|++++ .++.|.+|+++
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~-----------------~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLL-----------------QVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeee-----------------eEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 445557799999999964 332111 012 1345677899999999987765 57889999997
Q ss_pred CCCcceeceeecccccceeEEEEecCCCeEEEEEe-cCCCeEEEEe-c-CCC---eEEEecCCCCCeEEEeccCCCCccE
Q 001190 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWE-L-SGR---KLFNFEGHEAPVYSICPHHKENIQF 510 (1128)
Q Consensus 437 ~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~-s~d~~i~vWd-~-~g~---~~~~~~~h~~~v~~~~~~~~~~~~~ 510 (1128)
....+...... ...+....++|+|+++. ++++ ..++.|.+|+ . .|. .+..+.+ .....++++++ ++++
T Consensus 66 ~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p--~g~~ 139 (330)
T PRK11028 66 DDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP--DNRT 139 (330)
T ss_pred CCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC--CCCE
Confidence 32222221111 12345678999999994 4444 4588999999 3 332 2333332 23456677766 6667
Q ss_pred EEEE-eccCcEEEEecCCCCceee------ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC--Cc--eeeE
Q 001190 511 IFST-AIDGKIKAWLYDTMGSRVD------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GT--IKRT 579 (1128)
Q Consensus 511 l~s~-~~dg~i~~wd~~~~~~~~~------~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~--~~--~~~~ 579 (1128)
++++ ..++.|.+||++..+.... ....+.....++|+|+|++++++.. .++.|.+|++.. ++ .+..
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEE
Confidence 7554 5669999999976432210 1112345678999999999988764 478999999973 33 3333
Q ss_pred eccccC-----CceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCe----eeEEEecCCCCCCcceEEEcCCCCEEEEEEc
Q 001190 580 YAGFRK-----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1128)
Q Consensus 580 ~~~~~~-----~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 649 (1128)
+..... .....+.++|++++++++. .++.|.+|++.... .+...... .....+.++|+|++|+++..
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEc
Confidence 332111 1123478999999999986 47899999985432 22322221 13568899999999998876
Q ss_pred -CCcEEEEEccc
Q 001190 650 -DNGFKILANAI 660 (1128)
Q Consensus 650 -dg~i~iw~~~~ 660 (1128)
+++|.+|+++.
T Consensus 294 ~~~~v~v~~~~~ 305 (330)
T PRK11028 294 KSHHISVYEIDG 305 (330)
T ss_pred cCCcEEEEEEcC
Confidence 88999998753
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=1.5e-15 Score=146.61 Aligned_cols=256 Identities=15% Similarity=0.230 Sum_probs=184.7
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeecc-------CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSN-------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
++|.++|+.++-+|..+++|+|...+ ..+.||.+........ ...|+ .-..+-..+-+.|.|+.
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~tlE-------~v~~Ldteavg~i~cve 130 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SSTLE-------CVASLDTEAVGKINCVE 130 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cchhh-------HhhcCCHHHhCceeeEE
Confidence 46889999999999988899998653 2578999865432210 00010 01112225667999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCcc-eece--eecccccceeEEEEec--CCCeEEEEEecCCCeEEEEe-cCCCeE
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHS--QIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~--~~~~h~~~v~~l~fs~--d~~~~~l~s~s~d~~i~vWd-~~g~~~ 487 (1128)
|.|++..||+-. |..|.+|+++.+..+ .... .-.+|....++-+|+| ||. .+++.+ |+++..|| .+.++.
T Consensus 131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMKKN 206 (370)
T ss_pred EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchhhh
Confidence 999999999876 778999999987652 2111 1124667788999998 676 466555 89999999 766666
Q ss_pred EEe-cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeE-EEeeeccCCCc
Q 001190 488 FNF-EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRL-FSCGTSKDGDS 564 (1128)
Q Consensus 488 ~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l-~~~~~~~~~~~ 564 (1128)
..+ ..|...|..+.|.|+.. .+|++++.||.|++||.+..+. ...+..|.++|.++.|+|....| ++++ .|.
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~----SDs 281 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG----SDS 281 (370)
T ss_pred cchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC----CCc
Confidence 555 46888999999988754 7899999999999999987654 45788899999999999976554 5555 388
Q ss_pred eEEEEeCCCC-----------------------------ceeeEeccccCCceeEEEEeCCCCE-EEEEECCCcEEEEEC
Q 001190 565 FLVEWNESEG-----------------------------TIKRTYAGFRKKSNGVVQFDTTQNH-FLAVGEDSQIKFWDM 614 (1128)
Q Consensus 565 ~i~~wd~~~~-----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~s~dg~i~iwd~ 614 (1128)
.|.+|....- ..+.++..|.+ .|.+++|+....+ +++-+.||.+.|=.+
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 8888864321 12235566666 8999999876655 555789999887655
Q ss_pred C
Q 001190 615 D 615 (1128)
Q Consensus 615 ~ 615 (1128)
.
T Consensus 361 ~ 361 (370)
T KOG1007|consen 361 P 361 (370)
T ss_pred C
Confidence 3
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=3e-17 Score=179.73 Aligned_cols=238 Identities=16% Similarity=0.223 Sum_probs=182.6
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+.||-+.|.|++|...|.++++|++|..++||..+++.++. .+.||.+.|+.++.+.+.. ++++++.|..|++|
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVW 259 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEE
Confidence 388999999999999999999999999999999999998877 6889999999999998877 89999999999999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee----ecCCCCeEEEEEEcCCCCeEEE
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
. ..|.++..+.||++.|++++|+|-. +.+.||++++||.+-...... -......+.++.|-..+..+++
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 9 9999999999999999999998844 778999999999872211111 0112335667777777777777
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
++. ++.-..|...- +..+.. .+..+.++.+- .+.+++-.+-.+++|++.+|.+.+.+..+.+ .+..
T Consensus 334 gs~----d~ea~n~e~~~------l~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yv 400 (1113)
T KOG0644|consen 334 GSR----DGEARNHEFEQ------LAWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYV 400 (1113)
T ss_pred ccC----CcccccchhhH------hhhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--ceee
Confidence 764 44444454321 111111 11111222122 3555566778899999999999988886655 7889
Q ss_pred EEEcC-CCCEEEEEEcCCcEEEEEcccCc
Q 001190 635 LRFSK-EGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 635 v~~sp-~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
+.++| +.+...+++.||...|||+-.+.
T Consensus 401 Ld~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 401 LDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred eeecCCCcHhhhhccCCCceEeeecccCC
Confidence 99999 45556688899999999998773
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=6.1e-15 Score=142.62 Aligned_cols=288 Identities=14% Similarity=0.264 Sum_probs=206.4
Q ss_pred EEeecCCCcEEEEEEe--CCCCcEEEEeec----cCeEEEEEcc--CCceecccccccccccccCccccceeccCCCcce
Q 001190 338 AVSLHQGSTVISMDFH--PSHQTLLLVGSS----NGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fs--pdg~~lla~gs~----d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 409 (1128)
.....-.-.+.++.|| |+.+..||.||. .+.|.|-.+. +++.+... -..|..++
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a------------------~fd~~YP~ 99 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA------------------NFDHPYPV 99 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC------------------CCCCCCCc
Confidence 4444455678899998 677778899974 3566665553 33433221 23589999
Q ss_pred EEEEEccCCC-----EEEEEeCCCeEEEEEccCCC-cceecee-----ecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 410 SRVAWSPDGN-----YVGVAFTKHLIQLYSYAGSN-DLRQHSQ-----IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 410 ~~l~~spdg~-----~las~~~d~~i~vwd~~~~~-~~~~~~~-----~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
+.+-|.|+.+ +||+++ -.+++|.+...+ .++.... -..+.+++++..|..-..+ ++.++|-|-+..
T Consensus 100 tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCT 176 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCT 176 (364)
T ss_pred cceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEE
Confidence 9999999863 666654 369999987422 1111111 2246779999999876555 899999999999
Q ss_pred EEe-cCC---CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee-ecCC--CCeEEEEEEcCC-C
Q 001190 479 VWE-LSG---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAP--GHWCTTMLYSAD-G 550 (1128)
Q Consensus 479 vWd-~~g---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~--~~~i~~~~~s~~-g 550 (1128)
||| .+| .....+-.|...|..++|.. +.-+.+++.+.||.+|+||++..+.... +... ..+...++|++. -
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 999 655 34677889999999999986 3457999999999999999987655433 3322 347788888875 4
Q ss_pred CeEEEeeeccCCCceEEEEeCCCC-ceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCee------eEE
Q 001190 551 SRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNI------LTS 622 (1128)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~------~~~ 622 (1128)
+++++... ....|.+.|++.. .++..+++|.. .|..++|.|.. .+|.++|.|..+.+||+...-. +..
T Consensus 256 nymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 256 NYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred hHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 56666654 4667999999864 57888999987 89999999965 6889999999999999976422 222
Q ss_pred EecCCCCCCcceEEEcC-CCCEEEEEEcCCcEEE
Q 001190 623 TDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1128)
Q Consensus 623 ~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~i 655 (1128)
.. ....|+.+.|++ .+..++.+.. +.+.+
T Consensus 332 y~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 332 YT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 22 233799999997 5567776653 34433
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=1.2e-14 Score=161.44 Aligned_cols=261 Identities=14% Similarity=0.225 Sum_probs=172.1
Q ss_pred cccCCC-CCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccC
Q 001190 327 TWSLDD-LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~-~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|++.. ........+.+.+....++|+|||+++++++..++.|.+|+++. ++..... ...
T Consensus 16 ~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~------------------~~~ 77 (330)
T PRK11028 16 VWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA------------------ESP 77 (330)
T ss_pred EEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee------------------eec
Confidence 666642 23345566667778899999999996555555688999999973 3321100 001
Q ss_pred CCcceEEEEEccCCCEEEEEeC-CCeEEEEEccCCC-cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-
Q 001190 405 VPISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~-d~~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd- 481 (1128)
..+....++|+|+|++|++++. ++.|.+|++++.. .......+ .+......++|+|+|+. ++++...++.|.+||
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEE
Confidence 2235678999999999998864 7899999997432 22221122 23345678899999995 456777789999999
Q ss_pred cCCCeEE-------EecCCCCCeEEEeccCCCCccEEEEEec-cCcEEEEecCCC--Cc--eeeecC------CCCeEEE
Q 001190 482 LSGRKLF-------NFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTM--GS--RVDYDA------PGHWCTT 543 (1128)
Q Consensus 482 ~~g~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~--~~--~~~~~~------~~~~i~~ 543 (1128)
.+...+. .... ......++|++ ++++++++.. ++.|.+|+++.. .. ...+.. .......
T Consensus 156 ~~~g~l~~~~~~~~~~~~-g~~p~~~~~~p--dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTVE-GAGPRHMVFHP--NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred CCCCcccccCCCceecCC-CCCCceEEECC--CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 4432221 1111 23356788866 6788888776 899999999743 21 111211 1112346
Q ss_pred EEEcCCCCeEEEeeeccCCCceEEEEeCCCCc----eeeEeccccCCceeEEEEeCCCCEEEEEEC-CCcEEEEECC
Q 001190 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFWDMD 615 (1128)
Q Consensus 544 ~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~ 615 (1128)
+.++|+|++++++.. .++.|.+|++.... .+...... .....+.++|+|++|++++. ++.|.+|+++
T Consensus 233 i~~~pdg~~lyv~~~---~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 233 IHITPDGRHLYACDR---TASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEECCCCCEEEEecC---CCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 889999999998753 47889999986533 22222221 13456899999999998875 8999999874
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.5e-15 Score=169.07 Aligned_cols=308 Identities=18% Similarity=0.328 Sum_probs=210.3
Q ss_pred ccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC---CCCeEEEeccCCCCccEEEEEeccCcEEEEe
Q 001190 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH---EAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1128)
Q Consensus 449 ~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd 524 (1128)
+...+-..+.|+|-.. .++++...-.|+||| ..++.+..|..+ ...|+.+.+....|..++++++.||.||+|+
T Consensus 1062 ~n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred cCCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3334566788888887 688888778999999 999988877654 3468889888777888999999999999995
Q ss_pred cCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE
Q 001190 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1128)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 604 (1128)
--.... +...|+++. ..-++. ..+..+ .-..+.|.....+|+++|
T Consensus 1140 ~y~~~~------------------~~~eLVTaw------------~~Ls~~----~~~~r~-~~~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1140 DYADKW------------------KKPELVTAW------------SSLSDQ----LPGARG-TGLVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred cccccc------------------CCceeEEee------------cccccc----CccCCC-CCeeeehhhhCCeEEecC
Confidence 321110 111233331 111111 111111 113356666677888888
Q ss_pred CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceee
Q 001190 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1128)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~ 683 (1128)
.-..|+|||.........+..... ..|+++.-+. .|+.++.|..||.|++||.+.....
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d------------------- 1244 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD------------------- 1244 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc-------------------
Confidence 889999999998888887776543 3566665443 5799999999999999997654110
Q ss_pred eeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCC
Q 001190 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDT 763 (1128)
Q Consensus 684 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~ 763 (1128)
..|.+|.- |
T Consensus 1245 ----------------------------------------------------s~v~~~R~-------------------h 1253 (1387)
T KOG1517|consen 1245 ----------------------------------------------------SLVCVYRE-------------------H 1253 (1387)
T ss_pred ----------------------------------------------------ccceeecc-------------------c
Confidence 11122221 4
Q ss_pred ccc--EEEEEEecCcce-EEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 764 SSK--VVRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 764 ~~~--i~~l~~s~~g~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
... |..+.+-+.|-. |++++.+|.|++||+..... .... .....| ...+..+++..+
T Consensus 1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~---e~~~--~iv~~~---------------~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK---ETFL--TIVAHW---------------EYGSALTALTVH 1313 (1387)
T ss_pred CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc---cccc--eeeecc---------------ccCccceeeeec
Confidence 444 888888887755 99999999999999875210 0000 000001 123468999999
Q ss_pred cCCCeEEEEeCCeEEEEECCCceEEEEeeC-------CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 841 KNDSYVMSATGGKISLFNMMTFKVMTTFMS-------PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 841 ~dg~~la~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
++...+|+|+.+.|+||++.. +.+..++. ..+.+.|++|+| -.-++|+|+.|.+|.||.....+
T Consensus 1314 ~hapiiAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1314 EHAPIIASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCCCeeeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 999999999999999999853 33333321 234689999999 78889999999999999876543
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.9e-15 Score=149.99 Aligned_cols=297 Identities=15% Similarity=0.161 Sum_probs=217.2
Q ss_pred eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC------CCceeeEeccccCCceeEEEEeCCCCEEEEEECC
Q 001190 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1128)
Q Consensus 533 ~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 606 (1128)
.+..|.+.|.++.||.++++|++++. |..+++|++. +.+++.....|+...|.+++|...+..+++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 45568889999999999999999984 8899999975 3466776666665689999999999999999999
Q ss_pred CcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeee
Q 001190 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1128)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 686 (1128)
++|...|+++.+.+.........+.|+.+..+|..+.+++.+.++.|.+||.......... +...
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~---------------~~~A 191 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL---------------VLPA 191 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce---------------eeec
Confidence 9999999999999998877666668999999999999999999999999998764211110 0000
Q ss_pred cccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCccc
Q 001190 687 VSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSK 766 (1128)
Q Consensus 687 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1128)
.....
T Consensus 192 ---------------------------------------------------------------------------N~~~~ 196 (609)
T KOG4227|consen 192 ---------------------------------------------------------------------------NSGKN 196 (609)
T ss_pred ---------------------------------------------------------------------------CCCcc
Confidence 02223
Q ss_pred EEEEEEecCcce-EEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCC-CCCCeeEEEeccCCC
Q 001190 767 VVRLLYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN-LEEAVPCIALSKNDS 844 (1128)
Q Consensus 767 i~~l~~s~~g~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~ 844 (1128)
...+.|.|.... |++.+..+.+-+||+...... ++... ...+.. ....-..+.|+|.|.
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~------------~~~~~-------~~~~L~~~~~~~M~~~~~~~G~ 257 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARP------------VYQRS-------MFKGLPQENTEWMGSLWSPSGN 257 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccccch------------HHhhh-------ccccCcccchhhhheeeCCCCC
Confidence 455667776554 455566788999987643210 11100 001100 123345788999998
Q ss_pred eEEEEeC-CeEEEEECCCceEE-EEeeCCC-------CCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc----------
Q 001190 845 YVMSATG-GKISLFNMMTFKVM-TTFMSPP-------PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD---------- 905 (1128)
Q Consensus 845 ~la~~~d-g~i~vwd~~~~~~~-~~~~~~~-------~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---------- 905 (1128)
.+.+-.. ..-.+||+.+..+. ..+. |. ..+.+++|.. ..-+++|+.+-.|++|.+...
T Consensus 258 Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG 334 (609)
T KOG4227|consen 258 QFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIG 334 (609)
T ss_pred eehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccC
Confidence 8877764 44667888775543 3332 22 2467788874 455999999999999998531
Q ss_pred -------------eeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECC
Q 001190 906 -------------EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 945 (1128)
Q Consensus 906 -------------~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~ 945 (1128)
+.+..++||..-+..|.|+|...+|++.+..+.++||.--
T Consensus 335 ~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 335 HDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 1235688999999999999999999999999999999754
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.5e-15 Score=150.60 Aligned_cols=273 Identities=12% Similarity=0.161 Sum_probs=192.1
Q ss_pred EEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCCEEEEEeCCCeEEEEEcc
Q 001190 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYA 436 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~i~vwd~~ 436 (1128)
.+|++-..|+|+|||..+|+.+.. +++|...+..++|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 678888999999999999887754 788999999999977 46678899999999999999
Q ss_pred CCCcceeceeecccc-cceeEEEEecCCCeEEEEEecC----CCeEEEEe-cCCCe-EEEe-cCCCCCeEEEeccCCCCc
Q 001190 437 GSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGD----DKLIKVWE-LSGRK-LFNF-EGHEAPVYSICPHHKENI 508 (1128)
Q Consensus 437 ~~~~~~~~~~~~~h~-~~v~~l~fs~d~~~~~l~s~s~----d~~i~vWd-~~g~~-~~~~-~~h~~~v~~~~~~~~~~~ 508 (1128)
+.....++ ...+|. .+..+++-...++ .+++|.. |-.|.+|| ...+. +..+ ..|.+.|++++|+|+. -
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C
Confidence 87665443 345565 5677777765666 5666653 56799999 44443 4444 5799999999999984 4
Q ss_pred cEEEEEeccCcEEEEecCCCCce---eeecCCCCeEEEEEEcCCC-CeEEEeeeccCCCceEEEEeCCCCceeeEecccc
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~i~~~~~s~~g-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1128)
..|++|+.||.|.++|+...... .....++..|.++.|..++ +.|.+.+ ......+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT----H~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT----HMETFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE----ccCceeEEEccCCChhhcccCcc
Confidence 79999999999999998665332 2334456679999999887 3455544 37789999999887655544321
Q ss_pred CC---------ceeEE-EEeC-CCCEEEEEEC-CCcEEEEECC---CCe---eeEEEecCCCCCCcceEEEcCCCCEEEE
Q 001190 585 KK---------SNGVV-QFDT-TQNHFLAVGE-DSQIKFWDMD---NVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1128)
Q Consensus 585 ~~---------~v~~~-~~~~-~~~~l~~~s~-dg~i~iwd~~---~~~---~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 646 (1128)
-. .-..+ +.+| +...++.++. -|...++-+. ++. .+..+.+ ++..-|.++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 10 00111 1223 3344555443 5555555443 332 2333332 34456788889888999999
Q ss_pred EEcCCcEEEEEcc
Q 001190 647 TTADNGFKILANA 659 (1128)
Q Consensus 647 ~~~dg~i~iw~~~ 659 (1128)
|+.||.+.+|...
T Consensus 334 GGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 334 GGEDGLLQAWKVE 346 (376)
T ss_pred cCCCceEEEEecC
Confidence 9999999999863
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=7.1e-15 Score=164.90 Aligned_cols=269 Identities=15% Similarity=0.199 Sum_probs=201.3
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1128)
+|++.+. ......+.-...|+|++|+|....++|.|..+|.|.+||+..+....... .......|.
T Consensus 226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~sh~ 291 (555)
T KOG1587|consen 226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVSHS 291 (555)
T ss_pred EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------cccccccCC
Confidence 8998887 88888899999999999999998899999999999999998876521000 112356799
Q ss_pred cceEEEEEccCC--CEEEEEeCCCeEEEEEccCCCcceeceeec---------ccccceeEEEEecCCCeEEEEEecCCC
Q 001190 407 ISVSRVAWSPDG--NYVGVAFTKHLIQLYSYAGSNDLRQHSQID---------AHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 407 ~~V~~l~~spdg--~~las~~~d~~i~vwd~~~~~~~~~~~~~~---------~h~~~v~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
.+|+.+.|-.+- .-+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+++|
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG 370 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence 999999997654 459999999999999886432211100010 12346899999987766 788999999
Q ss_pred eEEEEe---cCCCe------EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecC-CCCceeeecCCCCeEEEEE
Q 001190 476 LIKVWE---LSGRK------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPGHWCTTML 545 (1128)
Q Consensus 476 ~i~vWd---~~g~~------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~~~i~~~~ 545 (1128)
.|..-+ .+-.. +..+..|.++|+++.++|-.. ..+++++ |.++++|... .......+..+...+++++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence 988743 22122 345667889999999877643 3455555 9999999887 5566666777777899999
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCC--ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 616 (1128)
|||-.-.++++.. .+|.+.+||+... .++.+.... ......+.+++.|+.|++|...|.+.+|++..
T Consensus 449 WSptrpavF~~~d---~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 449 WSPTRPAVFATVD---GDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCcCceEEEEEc---CCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9998776666653 6999999998754 344444433 33667788899999999999999999999864
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=4.8e-15 Score=169.34 Aligned_cols=235 Identities=12% Similarity=0.098 Sum_probs=164.9
Q ss_pred cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC---CeEEEEEccCCCcce
Q 001190 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLR 442 (1128)
Q Consensus 366 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~vwd~~~~~~~~ 442 (1128)
+..|.|||.+..... .+..|...+.+.+|||||++||.++.+ ..|.+||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998654421 256688899999999999999988654 469999998876432
Q ss_pred eceeecccccceeEEEEecCCCeEEEEE-ecCCCeEEEE--ecCCCeEEEecCCCCCeEEEeccCCCCccEEEEE-eccC
Q 001190 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVW--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDG 518 (1128)
Q Consensus 443 ~~~~~~~h~~~v~~l~fs~d~~~~~l~s-~s~d~~i~vW--d~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg 518 (1128)
+..+.+| ...++|+|||+ .|+. .+.+|.+.|| |..+..+..+..+...+....|++ ||+.|+.+ ..+|
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 2223344 44689999999 4554 4567876665 555555677777777788889976 66666554 4678
Q ss_pred cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCC
Q 001190 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1128)
Q Consensus 519 ~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1128)
..++|+++..........+.. ....|+|||+.+++.+. ..+.+||+.+++........ ....+.|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 899998765443333223332 45789999999988762 34677999988765433322 234578999999
Q ss_pred EEEEEECCCcEEEEEC--CCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 599 HFLAVGEDSQIKFWDM--DNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 599 ~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
+|+.++.+|.+.+|++ .++.....+..+. ..+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 9999999998888875 3566677665433 36788899884
No 202
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=2.9e-15 Score=144.64 Aligned_cols=226 Identities=18% Similarity=0.222 Sum_probs=172.0
Q ss_pred CCeEEEEECCCce--E-EEEeeCCCCCeeEEEEcCCCCCEEEEEeCC-------CcEEEEecccc---------eeeecc
Q 001190 851 GGKISLFNMMTFK--V-MTTFMSPPPASTFLAFHPQDNNIIAIGTED-------STIHIYNVRVD---------EVKSKL 911 (1128)
Q Consensus 851 dg~i~vwd~~~~~--~-~~~~~~~~~~v~~l~~s~~d~~~lasg~~d-------g~v~iwd~~~~---------~~~~~l 911 (1128)
++.|.+.+++... . ...|..|.+.|..++-+|.+.++|+++..+ ..+-||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5677777665432 2 245667889999999999888999988753 24679988643 334444
Q ss_pred c-ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccc-eeEEeecCCCCCCCccEEEEcC--CCCEEEEEecCeEE
Q 001190 912 K-GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK-SVTIHIPAGKTPTGDTRVQFNA--DQVRMLVVHETQLA 987 (1128)
Q Consensus 912 ~-~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~v~~s~--d~~~l~~~~d~~i~ 987 (1128)
. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+..+. ......... .....++-+|+| ||..+++.+|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-~~~~ftsg~WspHHdgnqv~tt~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-MRHSFTSGAWSPHHDGNQVATTSDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc-ccceecccccCCCCccceEEEeCCCcEE
Confidence 4 5667999999999999999876 7889999999887642 222222222 125667778988 89999999999999
Q ss_pred EEecCCcccccccccCCCCCCCeEEEEEeeCCC-EEEEEecCCcEEEEecCCCc-eEEEeCCCCCCCCcccCCCCccceE
Q 001190 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATFCDGNIGVFDADTLR-LRCYIAPSTYLSPSVLNGSQTVYPL 1065 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1065 (1128)
.||+++.+....+. ++|...|..+.|.|+-+ +|++++.||.|+|||.+.-+ .+..+. .|.-++-
T Consensus 197 ~~D~RT~~~~~sI~--dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~------------~HsHWvW 262 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIE--DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP------------GHSHWVW 262 (370)
T ss_pred EEEccchhhhcchh--hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC------------CCceEEE
Confidence 99999877766554 45689999999999877 56689999999999987543 333333 4555667
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1066 VVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1066 ~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
++.|+|...+++++||.|..|.+|...
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEecc
Confidence 899999888999999999999999755
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=1.7e-14 Score=161.96 Aligned_cols=249 Identities=17% Similarity=0.167 Sum_probs=182.5
Q ss_pred CCcceEEEEEcc-CCCEEEEEeCCCeEEEEEccCCCc--ceec-eeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 405 VPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSND--LRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 405 h~~~V~~l~~sp-dg~~las~~~d~~i~vwd~~~~~~--~~~~-~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
-...|+|++|+| +..++|.|..+|.|.+||+..+.. .... .....|..+++.+.|..+....-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567999999999 567778888999999999988765 2111 123478999999999876542358999999999999
Q ss_pred ecCCC-e-E-----EEec------CCCCCeEEEeccCCCCccEEEEEeccCcEEEE---ecCCCC-----ceeeecCCCC
Q 001190 481 ELSGR-K-L-----FNFE------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAW---LYDTMG-----SRVDYDAPGH 539 (1128)
Q Consensus 481 d~~g~-~-~-----~~~~------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w---d~~~~~-----~~~~~~~~~~ 539 (1128)
+.+.- . . .... .-...++++.|.+.. -..++.|+++|.|.-- ++.... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 93221 1 1 1111 112357888997764 4678899999998763 222222 1225566788
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC-CCceeeEeccccCCceeEEEEeCCCC-EEEEEECCCcEEEEECCCC
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~ 617 (1128)
+|+++.++|-+..++..+ +|-.++||... ...++..+..+.. .+..++|||-.. .++++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeee----ccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999999887766655 38999999987 6667777776665 699999999764 5566778999999999765
Q ss_pred ee--eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 618 NI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 618 ~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.. +...... ....+.+.|+++|+.|++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 43 3333332 346678889999999999999999999998654
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=1.4e-14 Score=166.19 Aligned_cols=256 Identities=11% Similarity=0.053 Sum_probs=180.8
Q ss_pred eccCCCcceEEEEEccC-CCEEEEEeCCCeEEEEEccCC----CcceeceeecccccceeEEEEecCCCeEEEEEecCCC
Q 001190 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
.+..|...|..++.+++ +.++++|+.||+|++||...- ...+...++.....++.++.+.+.+. .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 37889999999998875 499999999999999998631 22333334444567899999999999 688889999
Q ss_pred eEEEEecCC---Ce-----EEEecCC-CCCeEEE-eccCCCCccEEEEEeccCcEEEEecCCCCceeee--cCCCCeEEE
Q 001190 476 LIKVWELSG---RK-----LFNFEGH-EAPVYSI-CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTT 543 (1128)
Q Consensus 476 ~i~vWd~~g---~~-----~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~~i~~ 543 (1128)
.|++.+.+- +. ......+ .+.+.++ ++........++.+..-+.|..||++.....+.+ ....+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 999998322 11 1111222 2334333 4433322237888888999999999887666544 345668999
Q ss_pred EEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCC---CCEEEEEE--CCCcEEEEECCCCe
Q 001190 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---QNHFLAVG--EDSQIKFWDMDNVN 618 (1128)
Q Consensus 544 ~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s--~dg~i~iwd~~~~~ 618 (1128)
++.+|.+.+++.|.. .|.+.+||++-+.++....-.....+..++.+|- ....++++ ..+.|.+|++.+|.
T Consensus 1201 i~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EEecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 999999999999985 8889999999999888877655556666666553 34555544 57889999999997
Q ss_pred eeEEEecCCCC-----------------CCcceEEEcCCCCEEEEEEcCCcEEEEEcccCc
Q 001190 619 ILTSTDAEGGL-----------------PNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 619 ~~~~~~~~~~~-----------------~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
....+...... -......+...+..+.+|+.|..|+.||.....
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 66655433110 011122333345688899999999999987653
No 205
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.66 E-value=7.3e-13 Score=150.77 Aligned_cols=199 Identities=16% Similarity=0.182 Sum_probs=149.2
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
+|....+.-+.+ .++.++.++.+.|||+..+....... .+. ..--....-+-++++.-++++|+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~-------~~e--------r~~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ-------SDE--------RCTLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC-------CCc--------eEEEEeEEEEeccCcEEEEEecc
Confidence 444455555556 56888889999999998776553200 000 00001222345678888999999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEE-EecCCCCCeEEEecc
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-NFEGHEAPVYSICPH 503 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~-~~~~h~~~v~~~~~~ 503 (1128)
.-+.|.+|+....+ ... .+.||.+.|.++.|+.||. ++++.|+|.++++|+ .+++... ...+|..+|+.++|+
T Consensus 153 v~~~iivW~~~~dn-~p~--~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDN-KPI--RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred ccccEEEEeccccC-Ccc--eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 99999999998322 211 3779999999999999999 899999999999999 7766665 777899999999997
Q ss_pred CCCCccEEEEEeccCcEEEEecCCCCceeeecCC-CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
+. .+++++.|.+.++|+.+..... .+..| ...|..++..++...+++++. |+.+++|+....
T Consensus 228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR 290 (967)
T ss_pred cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence 63 8999999999999976544433 44444 447999999888888888874 999999997653
No 206
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=4.7e-14 Score=136.54 Aligned_cols=241 Identities=15% Similarity=0.196 Sum_probs=177.4
Q ss_pred CCCCCeeEEEeccCCC----eEEEEeCCeEEEEECCC--ceE--EEEe-----eCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001190 829 NLEEAVPCIALSKNDS----YVMSATGGKISLFNMMT--FKV--MTTF-----MSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1128)
Q Consensus 829 ~~~~~v~~~~~s~dg~----~la~~~dg~i~vwd~~~--~~~--~~~~-----~~~~~~v~~l~~s~~d~~~lasg~~dg 895 (1128)
.|..+++.+.|.||.+ -|+..++..+|+|.+.. .+. ...+ ..+..+++++.|..-+.+++.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 3899999999999874 23344567899999873 221 1111 235668999999988889999999999
Q ss_pred cEEEEecccce---eeecccccccCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEE
Q 001190 896 TIHIYNVRVDE---VKSKLKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF 971 (1128)
Q Consensus 896 ~v~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 971 (1128)
+-.|||++++. ....+-+|..+|..++|..++. .+||+|.||.||++|+...+-- ++.. .......+...++|
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-TIIY--E~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-TIIY--EDPSPSTPLLRLSW 250 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-eEEe--cCCCCCCcceeecc
Confidence 99999999873 3567889999999999998654 8899999999999999885421 1111 12222367888999
Q ss_pred cCCC-CEEEEE--ecCeEEEEecCCcc-cccccccCCCCCCCeEEEEEeeC-CCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 972 NADQ-VRMLVV--HETQLAIYDASKME-RIRQWTPQDALSAPISCAVYSCN-SQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 972 s~d~-~~l~~~--~d~~i~v~d~~~~~-~~~~~~~~~~h~~~v~~l~~s~d-g~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
++.. .++++- +...|.|.|++... .+..+..| .+.|+.++|.|. ...|++++.|..+.+||+.+.-..
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H---~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~---- 323 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH---QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE---- 323 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC---cccccceEecCCCCceeeecCCcceEEEEeccccccc----
Confidence 8865 455552 46789999998654 45566554 899999999995 558999999999999999864331
Q ss_pred CCCCCCCcccCCCCccceEEEEEecCCCCEEEEEEC
Q 001190 1047 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT 1082 (1128)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~ 1082 (1128)
......+.......|..++|++..+.-++.+..
T Consensus 324 ---~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 324 ---NGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ---CCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 111222333445567899999887787777765
No 207
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=1.5e-13 Score=151.04 Aligned_cols=331 Identities=11% Similarity=0.080 Sum_probs=203.4
Q ss_pred EEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeE
Q 001190 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1128)
Q Consensus 511 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 590 (1128)
+++-..+|.|.+.|..+.+....+.........+.|+|||+++++++ .++.|.++|+.+++.+.+++... ....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~----rdg~vsviD~~~~~~v~~i~~G~--~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN----RDGTVSVIDLATGKVVATIKVGG--NPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE----TTSEEEEEETTSSSEEEEEE-SS--EEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc----CCCeEEEEECCcccEEEEEecCC--Ccce
Confidence 35566789999999999888888877666556688999999999886 37899999999999999987654 4667
Q ss_pred EEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCC-----CCCCcceEEEcCCCCEEEEEEc-CCcEEEEEcccCcc
Q 001190 591 VQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEG-----GLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLR 663 (1128)
Q Consensus 591 ~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~ 663 (1128)
+++++||+++++++ .++.+.++|.++.+.+..+...+ ....+..+..+|....+++.-. .+.|.+.|......
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999876 78999999999999998876532 2235667777888776665554 47776666544311
Q ss_pred ccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCccee
Q 001190 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQL 743 (1128)
Q Consensus 664 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~ 743 (1128)
.... .-.
T Consensus 163 ~~~~-----------------~i~-------------------------------------------------------- 169 (369)
T PF02239_consen 163 LKVT-----------------TIK-------------------------------------------------------- 169 (369)
T ss_dssp EEEE-----------------EEE--------------------------------------------------------
T ss_pred ccee-----------------eec--------------------------------------------------------
Confidence 0000 000
Q ss_pred EEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEee-ccceeEeeeccccCCCCCCceeeeeccceeccCCCcccc
Q 001190 744 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1128)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1128)
.........|+|++++++++. .++.+-++|...... +..+..|....
T Consensus 170 -------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~~p~ 217 (369)
T PF02239_consen 170 -------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGKKPH 217 (369)
T ss_dssp ---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SSSBE
T ss_pred -------------------ccccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeecccccc
Confidence 112334678888988876654 356777777543221 11111121100
Q ss_pred -ccccCCCCCCCeeEEEeccCCCeEEEE-eCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEE----eCCCc
Q 001190 823 -NDVAGVNLEEAVPCIALSKNDSYVMSA-TGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG----TEDST 896 (1128)
Q Consensus 823 -~~~~~~~~~~~v~~~~~s~dg~~la~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg----~~dg~ 896 (1128)
.......|...-.--+.+..+...++. +.+.+.+||..+.+.++++....+. .-+..+| +++++.+. ...++
T Consensus 218 ~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~ 295 (369)
T PF02239_consen 218 PGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADT 295 (369)
T ss_dssp ETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-
T ss_pred ccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCce
Confidence 000000022111111222344444332 3556778999999999999977666 7888899 88898887 45689
Q ss_pred EEEEecccceeeeccccccc-CeeEEEEcCCCCEEEEEcC--CCcEEEEECCCCcccceeE
Q 001190 897 IHIYNVRVDEVKSKLKGHQK-RITGLAFSTSLNILVSSGA--DAQLCVWSIDTWEKRKSVT 954 (1128)
Q Consensus 897 v~iwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~l~s~~~--Dg~i~iwd~~~~~~~~~~~ 954 (1128)
|.++|.++.+.+..+....+ .+..+.|++||+++..... ++.|.+||..+.+....++
T Consensus 296 v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 296 VQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99999999988877753332 5899999999996554433 3479999999988776665
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=2.9e-14 Score=160.73 Aligned_cols=261 Identities=18% Similarity=0.229 Sum_probs=177.8
Q ss_pred ccEEEEEEec--CcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 765 SKVVRLLYTN--SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 765 ~~i~~l~~s~--~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
..|+.+.+-+ |...+++++.||.|++|+--.... ++ ..-+.-|..-++.... ..+.-.-+.|-..
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~---~~---~eLVTaw~~Ls~~~~~-------~r~~~~v~dWqQ~ 1176 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW---KK---PELVTAWSSLSDQLPG-------ARGTGLVVDWQQQ 1176 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEeccccccc---CC---ceeEEeeccccccCcc-------CCCCCeeeehhhh
Confidence 3455555543 445788889999999996321110 00 0011223333332221 1111134566665
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeC-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc---eeeecccccccC
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD---EVKSKLKGHQKR 917 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~ 917 (1128)
..+|.+++ -..|+|||+....+...+.. ....|+++.-+...|.++|+|..||.|++||.+.. ..+...+.|+..
T Consensus 1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence 55555555 46799999998877776653 34457887766656899999999999999998754 356778889888
Q ss_pred --eeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCc
Q 001190 918 --ITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 994 (1128)
Q Consensus 918 --V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~ 994 (1128)
|..+.+-+.|- .|++|+.||.|++||+..........+.... ..++..+++..+++...+++|+.+.|+||++. |
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~-~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G 1334 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW-EYGSALTALTVHEHAPIIASGSAQLIKIYSLS-G 1334 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc-ccCccceeeeeccCCCeeeecCcceEEEEecC-h
Confidence 99999998765 5999999999999999985333333222211 11245899999999999999988999999986 3
Q ss_pred ccccccccCCC----CCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCc
Q 001190 995 ERIRQWTPQDA----LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1040 (1128)
Q Consensus 995 ~~~~~~~~~~~----h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~ 1040 (1128)
+.+..+..... ....+.|++|.|---++|+|+.|.+|.||..+..+
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 33333222110 15677999999999999999999999999887654
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=3.1e-13 Score=135.93 Aligned_cols=241 Identities=10% Similarity=0.112 Sum_probs=183.6
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g 484 (1128)
...+..+.|..|...|..|+.|| -++|..+.-.... ........|--+-|+ ...+.+|+...-+.+++.+ ..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC
Confidence 34677778999999999999998 5888877643311 111223345555565 3422334443334599999 777
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC---CCeEEEEEEcCCCCeEEEeeeccC
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---~~~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
..+..+. ...+|.++.+.. ++|+++-.+. |.|||+...+...++... ...+.++++++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 7776665 345688988843 5677666554 999999998888766543 335777777777778887643 2
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCc-EEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
..|.|++||+.+-+.+..+..|.+ .+.+++|+++|..|+++|+.|+ |||+.+.+|+.+..+........|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 377899999999999999999887 8999999999999999999887 68999999999999876555567899999999
Q ss_pred CCEEEEEEcCCcEEEEEcccC
Q 001190 641 GNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++|++.+..++|.+|.+...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998764
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=4.8e-14 Score=141.63 Aligned_cols=242 Identities=11% Similarity=0.199 Sum_probs=184.3
Q ss_pred CCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC--cEEEEeccccee
Q 001190 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDEV 907 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~ 907 (1128)
....+..+.|..|...|..|+....++|+.+..............|..+-|+. .++|..+.+. .+++++.+.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence 34557777899999999999966678888876554333323334566777765 4666666543 489999988877
Q ss_pred eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE---ecC
Q 001190 908 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV---HET 984 (1128)
Q Consensus 908 ~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~---~d~ 984 (1128)
+..+. -..+|.+|.++. ++|+.+=.+ .|.|||+++-+.+.++..... ....+..+.++..+.+++.- ..|
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~---n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPP---NPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCC---CccceEeeccCCCCceEEecCCCCCc
Confidence 77665 346788998864 456655544 499999999776655543311 11345555566667788872 378
Q ss_pred eEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCc-EEEEecCCCceEEEeCCCCCCCCcccCCCCccc
Q 001190 985 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN-IGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1063 (1128)
Q Consensus 985 ~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1128)
.|.+||+.+.+.+..+..| .+++-+++|++||.+|||+++.|+ |+|+.+.+|+.+..++... -.+.
T Consensus 154 dV~l~d~~nl~~v~~I~aH---~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~----------~~~~ 220 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAH---KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT----------YPVS 220 (391)
T ss_pred eEEEEEcccceeeeEEEec---CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc----------eeeE
Confidence 9999999999998888755 899999999999999999999997 7999999999999999432 3567
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1064 PLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1064 ~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+.+++|+| +..+|++.|..++|++|+++...
T Consensus 221 IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 89999999 69999999999999999999876
No 211
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.6e-16 Score=174.69 Aligned_cols=215 Identities=16% Similarity=0.238 Sum_probs=163.1
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC-eEEEE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKVW 480 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~-~i~vW 480 (1128)
+..|+...+|++||-+.+.|+.|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. .|.+++... -..+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 77789999999999999999999999999999999998766 47799999999999999995 333343333 57899
Q ss_pred e--cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC----CCeEEEEEEcCCCCeEE
Q 001190 481 E--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 481 d--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----~~~i~~~~~s~~g~~l~ 554 (1128)
+ ..+.+.+++.+ -.++.|+.. .+.-+.|+......+||+++.....++-.. ...-++..|+|+..+++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9 66777776654 345667543 234445555567889999998776653222 22347788999998887
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
- || .+||++..+.++.|..... ...-.|+|.|..++.-++ |||+++.+.+...+.-.. ..
T Consensus 1247 n-------dG--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~ 1306 (1516)
T KOG1832|consen 1247 N-------DG--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CA 1306 (1516)
T ss_pred e-------Cc--eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eE
Confidence 5 43 5699999988888876553 233569999999999887 999999998887764433 67
Q ss_pred EEEcCCCCEEEE
Q 001190 635 LRFSKEGNLLAV 646 (1128)
Q Consensus 635 v~~sp~~~~l~~ 646 (1128)
+.|+..|..++.
T Consensus 1307 VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYA 1318 (1516)
T ss_pred EEeccCccchhh
Confidence 888888876654
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=3.5e-14 Score=139.65 Aligned_cols=237 Identities=16% Similarity=0.175 Sum_probs=179.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-..+|+|.+|++|+. .+|++-....|.||.....+.-. ..+.+..|...|++|.|+|....|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 346899999999998 77888889999999987665221 3456889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeE-----EEecCCCCCe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-----FNFEGHEAPV 497 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~-----~~~~~h~~~v 497 (1128)
+|+.|..-+||....+...+....+..|+...+++.|+|.+. .+++||..+.|.||-.+++.- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999955555555556778999999999999999 899999999999998443322 2334567789
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEec-----CCC-------------CceeeecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLY-----DTM-------------GSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~-----~~~-------------~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
+++.|++ ++-+|++|+.|+..|++.. +.. ....++...++.+..+.|+|+|..|+..+.
T Consensus 150 ~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 9999998 5579999999999999853 111 111233355678999999999999998884
Q ss_pred cCCCceEEEEeCCCCc-eeeEeccccCCceeEEEEeCCCCEEEEEECC
Q 001190 560 KDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 606 (1128)
|..+.+-|..... .+.......- +...+.|-.+ +.++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhccC-CceeeEeecC-CceeecCCC
Confidence 8889888877654 3333333332 4444555433 445555555
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.5e-13 Score=144.61 Aligned_cols=575 Identities=11% Similarity=0.134 Sum_probs=345.1
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
++......|++|+-... ++|+|+.||.+++-.+.+...-... --+.+...-.....+.||.+.|.-+.|+.+.+.
T Consensus 11 iPnnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~----~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK 85 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNK----SGLAAASNLSMNQTLEGHNASVMVVTWNENNQK 85 (1189)
T ss_pred CCCCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccc----cccccccccchhhhhccCcceEEEEEecccccc
Confidence 34566788999999887 7899999999999998765432110 112222233334569999999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~ 500 (1128)
|-+...+|.|.||-+-.|.-.... .-....+.|.+++|..||+ .+...-.||.|.|=..+|..+..-.-...-...+
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv 162 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHV 162 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchheccce
Confidence 999999999999999888755432 1224567899999999999 6777788888877666666553222111123355
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCc-------ee----eecCCCCeEEEEEEc--------CCCCeEEEeeeccC
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGS-------RV----DYDAPGHWCTTMLYS--------ADGSRLFSCGTSKD 561 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-------~~----~~~~~~~~i~~~~~s--------~~g~~l~~~~~~~~ 561 (1128)
.|++ |...++.+-.+|.+.++|.+..-. .. .+...+..|..+.|. ||.-.++.+..
T Consensus 163 ~ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~--- 237 (1189)
T KOG2041|consen 163 LWSE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA--- 237 (1189)
T ss_pred eecc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc---
Confidence 6655 667777888889999998653211 01 111122234444442 46667777763
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC---------CcEEEEECCCCeeeEEEecCCCCCCc
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
+|.+.+..-.+......+... -.+....|+++|..|+++|.+ +.|.+|. .-|+.+.+++..+. .|
T Consensus 238 -nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 238 -NGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--CI 311 (1189)
T ss_pred -CceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--ee
Confidence 666666543332222222211 145668899999999998743 2455555 35677778877665 79
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (1128)
++++|-..|-.++.+- |+.|.+=+++....- -.++ ..+.+...+.-+
T Consensus 312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykW-gy~e-----------~TvVy~y~~~e~-------------------- 358 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKW-GYIE-----------ETVVYVYQKEEL-------------------- 358 (1189)
T ss_pred eeeEEcCCceEEEEEe-cceEEEEeecccceE-EEee-----------eEEEEEEccCCC--------------------
Confidence 9999988887777765 678877666543110 0000 011111111000
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeee
Q 001190 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1128)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~ 792 (1128)
-.-.|.+||.......-. .-....+++++.+--.|+.-..+|.+.-++
T Consensus 359 ---------------------p~y~i~Fwdtk~nek~vK-----------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s 406 (1189)
T KOG2041|consen 359 ---------------------PQYGIMFWDTKTNEKTVK-----------TVTHFENMAFYREHCVLINRQDDGVIPEYS 406 (1189)
T ss_pred ---------------------cceEEEEEecccChhhhh-----------hhcceeehheecccEEEEeccccCCCcchh
Confidence 002234555443111100 112234566666666566666666655442
Q ss_pred ccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeC--
Q 001190 793 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS-- 870 (1128)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~-- 870 (1128)
--. ... ++|.+.-...+...+.. .-..|+-.-..-++.+++.++...+.+|.....+....+.+
T Consensus 407 ~le-------~~~-----~~~~l~LCNSIGT~lD~--kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k 472 (1189)
T KOG2041|consen 407 TLE-------NRS-----RVYFLQLCNSIGTSLDY--KYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVK 472 (1189)
T ss_pred hhh-------ccc-----ceEEEeeecccCCcCCC--CcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhh
Confidence 100 000 01111100011101100 11223333333478888999988999998766554433322
Q ss_pred -CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc
Q 001190 871 -PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949 (1128)
Q Consensus 871 -~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~ 949 (1128)
+...- |+- | ..-+|+.|+++.- . .+++.|..++|.+++.+ .++|..+-..|.|.-|.+...-.
T Consensus 473 ~rkegr----~h~-D--dtp~ga~d~~l~y---s----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l 536 (1189)
T KOG2041|consen 473 IRKEGR----FHG-D--DTPEGAQDRTLEY---S----TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVL 536 (1189)
T ss_pred hccccc----ccC-C--CCccchhhceeec---c----ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceee
Confidence 11111 332 1 2235566665531 1 35677888999999887 46888888999999999988654
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecC---CcccccccccCCCCCCCeEEEEEeeCCCEEEEE
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDAS---KMERIRQWTPQDALSAPISCAVYSCNSQLVFAT 1025 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~---~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~ 1025 (1128)
+...++. ..+..++..-+...+++.+ -|.+.+.|+. +|..+..+.... ...|+.+.|..|...+++-
T Consensus 537 ~n~y~~n-------~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~Wa~dNp~llAl 607 (1189)
T KOG2041|consen 537 TNSYPVN-------PSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYEWAQDNPNLLAL 607 (1189)
T ss_pred eeccccC-------chheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhhhccCCchHHhh
Confidence 4333332 5678888888888888765 6777777776 344444333322 6789999999988877776
Q ss_pred ecCCcEEEEecCC
Q 001190 1026 FCDGNIGVFDADT 1038 (1128)
Q Consensus 1026 ~~dg~i~vwd~~~ 1038 (1128)
-+...++|++-.+
T Consensus 608 meKtrmyifrgnd 620 (1189)
T KOG2041|consen 608 MEKTRMYIFRGND 620 (1189)
T ss_pred hhhceEEEecCcC
Confidence 6667788877544
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=4.9e-14 Score=138.68 Aligned_cols=233 Identities=18% Similarity=0.206 Sum_probs=180.5
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~ 483 (1128)
-..+|+|.||++|+..+|.+..+..|.||.....+.....+++..|...|+.++|+|... .|++|+.|..-+||. .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 356999999999999999999999999999999887777788999999999999999998 799999999999999 35
Q ss_pred C---CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee----ecCCCCeEEEEEEcCCCCeEEEe
Q 001190 484 G---RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 484 g---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
| ++...+..+....+++.|+|.+ +.+++|+.-..|.+|-++....-.. -......|.++.|.|++-+++++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4 3445667788999999998855 6899999999999998876554432 22334578999999999999998
Q ss_pred eeccCCCceEEEEeC-----CC-------------CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 557 GTSKDGDSFLVEWNE-----SE-------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~-----~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
+. |+..+++.. ++ |++..++. ...+-+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 85 777887753 11 23333443 233468899999999999999999999999987765
Q ss_pred -eeEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001190 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1128)
Q Consensus 619 -~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 648 (1128)
.+...... . -+..++.|-.+...++.|.
T Consensus 240 ~~v~~~~~~-~-lP~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 240 ERVQSVATA-Q-LPLLSVSWISENSVVAAGY 268 (361)
T ss_pred hhccchhhc-c-CCceeeEeecCCceeecCC
Confidence 23332221 1 3556677765544444443
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=2.8e-13 Score=148.84 Aligned_cols=319 Identities=11% Similarity=0.135 Sum_probs=200.4
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCC
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 641 (1128)
+++.|.+.|..+.+.+.++..... .-..+.+++||+++++++.||.|.++|+.+++.+..+.... ...++++++||
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~DG 89 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSPDG 89 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE--TT
T ss_pred CCCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcCCC
Confidence 488999999999999999987544 34457899999999999999999999999999999987643 35889999999
Q ss_pred CEEEEEE-cCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCC
Q 001190 642 NLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1128)
Q Consensus 642 ~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1128)
++++++. ..+.+.++|..+. +.++.+......
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~---------------------------------------------- 122 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMP---------------------------------------------- 122 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT---EEEEEE--EE-----------------------------------------------
T ss_pred CEEEEEecCCCceeEeccccc-cceeeccccccc----------------------------------------------
Confidence 9998776 5899999998775 333222111000
Q ss_pred CCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeec-cceeEeeeccccCCC
Q 001190 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQN 799 (1128)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~lw~~~~~~~~ 799 (1128)
. .....++.++..++....+++.-. .+.|.+-|+....
T Consensus 123 --------------------------------------~-~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~-- 161 (369)
T PF02239_consen 123 --------------------------------------V-DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK-- 161 (369)
T ss_dssp --------------------------------------T-TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS--
T ss_pred --------------------------------------c-cccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc--
Confidence 0 002345667777787775555444 4666555543210
Q ss_pred CCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeC----CCC
Q 001190 800 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS----PPP 873 (1128)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~----~~~ 873 (1128)
.+....+ ..........|+|++++++++. ++.|.++|..+++.+..+.. |..
T Consensus 162 -------------------~~~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~ 219 (369)
T PF02239_consen 162 -------------------NLKVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPG 219 (369)
T ss_dssp -------------------CEEEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEET
T ss_pred -------------------ccceeee---cccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccc
Confidence 0000001 1344566789999999988775 67899999999988776542 333
Q ss_pred CeeEEEEcCC---------CCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEE----cCCCcEE
Q 001190 874 ASTFLAFHPQ---------DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS----GADAQLC 940 (1128)
Q Consensus 874 ~v~~l~~s~~---------d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~----~~Dg~i~ 940 (1128)
+...+ .+|. .+...++.-....+.+||..+.+.++++....++ .-+..+|+++++... ...++|.
T Consensus 220 ~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~ 297 (369)
T PF02239_consen 220 PGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQ 297 (369)
T ss_dssp TEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EE
T ss_pred ccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEE
Confidence 33222 1221 2223322333345667899999999999877666 788889999999987 4458999
Q ss_pred EEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe---cCeEEEEecCCcccccccc
Q 001190 941 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKMERIRQWT 1001 (1128)
Q Consensus 941 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d~~i~v~d~~~~~~~~~~~ 1001 (1128)
++|.++.+....+... .+ ..+..+.|++||+++.++. ++.|.+||..+.+.+..+.
T Consensus 298 viD~~tl~~~~~i~~~--~~---~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 298 VIDKKTLKVVKTITPG--PG---KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEECCGTEEEE-HHHH--HT-----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEECcCcceeEEEecc--CC---CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9999997543332211 11 2377899999999887752 4489999999999887765
No 216
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=5.9e-15 Score=151.20 Aligned_cols=199 Identities=14% Similarity=0.214 Sum_probs=158.7
Q ss_pred eEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccc
Q 001190 835 PCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 913 (1128)
Q Consensus 835 ~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 913 (1128)
..++|++||..|++++ ||++|||+..+...+.....|...|.++.|+| |+++|++-+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999999888888889999999999999 99999999999 999999999977665542
Q ss_pred --cccCeeEEEEcCCC-----CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCe
Q 001190 914 --HQKRITGLAFSTSL-----NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQ 985 (1128)
Q Consensus 914 --h~~~V~~l~~s~d~-----~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~ 985 (1128)
-......+.|+.|+ ..++....-+.|+.||+.....-......... .....+++++.++||++++.|+ +|.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEEeccCCc
Confidence 22346678888887 33444455577888877654431111111111 1115799999999999999986 999
Q ss_pred EEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 986 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 986 i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
|.||+..+.+.+.... ++|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 305 Vai~~~~~lq~~~~vk--~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVK--EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeeh--hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999998887766544 45689999999999999999999999999888765
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.5e-12 Score=128.36 Aligned_cols=237 Identities=12% Similarity=0.168 Sum_probs=170.2
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccc--eeEEEEecCCCeEEEEEecCC------CeEEE
Q 001190 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGA--VNDLAFAYPNKLLCVVTCGDD------KLIKV 479 (1128)
Q Consensus 408 ~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~--v~~l~fs~d~~~~~l~s~s~d------~~i~v 479 (1128)
...+++|+.|...+++|..+| .+||+.+--+... .-.-+.+. +.-+-| -.+.+.| .|+.+ ..|.|
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laL-VGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLAL-VGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEE-ecCCCCCCCCCceEEE
Confidence 445599999999999998877 8999987532211 11112222 222223 2333233 34433 57999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC-CCceeeecCCC--CeEEEEEEcCCCCeEEE
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPG--HWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~--~~i~~~~~s~~g~~l~~ 555 (1128)
|| ...+++..+. ...+|.++.+.+ ..|++. .++.|.+|.... .+....+.... ....+++-..+-..|+.
T Consensus 80 WDD~k~~~i~el~-f~~~I~~V~l~r----~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 80 WDDLKERCIIELS-FNSEIKAVKLRR----DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EecccCcEEEEEE-eccceeeEEEcC----CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence 99 8888888887 567899999854 244443 568999998863 34444433322 23444444444445555
Q ss_pred eeeccCCCceEEEEeCCCCce--eeEeccccCCceeEEEEeCCCCEEEEEECCCc-EEEEECCCCeeeEEEecCCCCCCc
Q 001190 556 CGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
-+. ..|.|+|-|+...+. ...+..|.. .|.|++++-+|..++++|..|+ |||||..+|..+..+........|
T Consensus 154 Pg~---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 154 PGF---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred CCC---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 443 578999999887665 467777876 8999999999999999999887 799999999999998876666789
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.+++|||+..+|+++++.|++.|+.+...
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999998764
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=6.6e-14 Score=160.67 Aligned_cols=177 Identities=15% Similarity=0.169 Sum_probs=136.6
Q ss_pred EecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC-------ceeeecCCCCeEEEEEEcCCCCe
Q 001190 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-------SRVDYDAPGHWCTTMLYSADGSR 552 (1128)
Q Consensus 480 Wd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-------~~~~~~~~~~~i~~~~~s~~g~~ 552 (1128)
|+..|..+..+..|...|..++.+. +++.++++|+.||+|++|+.+... ...++...+..+.++.+.+.|+.
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 8889999999999999999988865 355899999999999999986532 23455556778999999999999
Q ss_pred EEEeeeccCCCceEEEEeCCCC-------ceeeEeccccCCc-eeEEEEeCC-CC-EEEEEECCCcEEEEECCCCeeeEE
Q 001190 553 LFSCGTSKDGDSFLVEWNESEG-------TIKRTYAGFRKKS-NGVVQFDTT-QN-HFLAVGEDSQIKFWDMDNVNILTS 622 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~~-------~~~~~~~~~~~~~-v~~~~~~~~-~~-~l~~~s~dg~i~iwd~~~~~~~~~ 622 (1128)
+++++ .||.|++.++.-- ...+....+..+. +..-+|... +. .++.+...+.|..||.........
T Consensus 1113 ~Av~t----~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVST----KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEc----CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 99986 5999999988751 1122222222222 333344332 23 677888899999999998887777
Q ss_pred EecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++..-..+.|++++.+|.+.+++.|+..|.+.+||++-+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 766555568999999999999999999999999999765
No 219
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.61 E-value=3e-11 Score=125.08 Aligned_cols=144 Identities=13% Similarity=0.074 Sum_probs=106.5
Q ss_pred CcccEEEEEEecCcceEEEeeccc-eeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNG-VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg-~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 841 (1128)
+.+.|.-..+..++..++.+..|| .+-+++... ++... +. ..-+.|.++..++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~----------------------~e~kr--~e--~~lg~I~av~vs~ 411 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG----------------------GEVKR--IE--KDLGNIEAVKVSP 411 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCC----------------------ceEEE--ee--CCccceEEEEEcC
Confidence 444455555556666678888887 777776543 22111 11 1456799999999
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC----cEEEEecccceeeeccccccc
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS----TIHIYNVRVDEVKSKLKGHQK 916 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~ 916 (1128)
||++++++. ...|.+.|++++.....-+...+-|+.++|+| +++++|.+--+| .|+++|+..++....-. ..+
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 999999998 57899999999988776666777899999999 999999988776 68999999888654332 333
Q ss_pred CeeEEEEcCCCCEEEEEc
Q 001190 917 RITGLAFSTSLNILVSSG 934 (1128)
Q Consensus 917 ~V~~l~~s~d~~~l~s~~ 934 (1128)
.=.+-+|.||+++|.--+
T Consensus 490 ~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cccCcccCCCCcEEEEEe
Confidence 445778999999877654
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=8.1e-14 Score=159.29 Aligned_cols=220 Identities=15% Similarity=0.162 Sum_probs=147.6
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeecc---CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.....|...|.+.+|||||+++ +..+.+ ..|.+||+.+++.... ..+.+| ..+++|
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~l-a~~s~~~~~~~i~i~dl~tg~~~~l-----------------~~~~g~---~~~~~w 255 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKL-AYVSFENKKSQLVVHDLRSGARKVV-----------------ASFRGH---NGAPAF 255 (429)
T ss_pred eEeccCCCccccceEcCCCCEE-EEEEecCCCcEEEEEeCCCCceEEE-----------------ecCCCc---cCceeE
Confidence 3344588899999999999955 544432 4799999988764221 013333 346899
Q ss_pred ccCCCEEEEEe-CCCeEEEE--EccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEE
Q 001190 415 SPDGNYVGVAF-TKHLIQLY--SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFN 489 (1128)
Q Consensus 415 spdg~~las~~-~d~~i~vw--d~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~ 489 (1128)
||||++|+.++ .+|.+.|| |+.+++. + .+..|...+....|+|||+. +++++..++...||+ ..+.....
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEE
Confidence 99999998875 67766665 5555543 2 35567778899999999995 344455678888888 44444443
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEE
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~w 569 (1128)
+ .+.+ ....|+| +|+.|+..+.++ +.+||+.++........ .....+.|+|||+++++++. ++...+|
T Consensus 331 l-~~~~--~~~~~Sp--DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~----~g~~~~l 398 (429)
T PRK01742 331 V-GGRG--YSAQISA--DGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST----QGLGKVL 398 (429)
T ss_pred e-cCCC--CCccCCC--CCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc----CCCceEE
Confidence 4 3443 3456755 678888877765 55599877655432222 23456789999999999874 4445555
Q ss_pred eC--CCCceeeEeccccCCceeEEEEeCC
Q 001190 570 NE--SEGTIKRTYAGFRKKSNGVVQFDTT 596 (1128)
Q Consensus 570 d~--~~~~~~~~~~~~~~~~v~~~~~~~~ 596 (1128)
.+ .+|+.++.+..+.. .+...+|+|-
T Consensus 399 ~~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 399 QLVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred EEEECCCCceEEccCCCC-CCCCcccCCC
Confidence 54 35777888877665 6777888874
No 221
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.3e-14 Score=148.61 Aligned_cols=297 Identities=15% Similarity=0.193 Sum_probs=215.6
Q ss_pred CCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 761 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
..|.+.|..+.|...|..+++++.|..+.+||+..... ......+ |...|....|-
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~----------------------~l~f~SG--H~~NvfQaKFi 194 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP----------------------KLSFESG--HCNNVFQAKFI 194 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCc----------------------ccccccc--cccchhhhhcc
Confidence 34999999999999999999999999999999864332 1111222 66666666666
Q ss_pred c--CCCeEEEEe-CCeEEEEECC-CceE--EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc---
Q 001190 841 K--NDSYVMSAT-GGKISLFNMM-TFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL--- 911 (1128)
Q Consensus 841 ~--dg~~la~~~-dg~i~vwd~~-~~~~--~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l--- 911 (1128)
| +.+-+++.+ ||.+++=.+. ++.+ ...+..|.+.|..++.-|+...-+.+++.|+.+.-+|+..+.....+
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee
Confidence 5 334556655 8998887664 3322 34456799999999999988888999999999999999876443322
Q ss_pred ccccc---CeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCccc------ceeEEeecCCCCCCCccEEEEcCCCCEE-EE
Q 001190 912 KGHQK---RITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKR------KSVTIHIPAGKTPTGDTRVQFNADQVRM-LV 980 (1128)
Q Consensus 912 ~~h~~---~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~v~~v~~s~d~~~l-~~ 980 (1128)
+.+.. ....++..|... .+++++.|..+++||...-... ..++.+.........|++++|+.++.-| ++
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 22333 456788888765 8899999999999998653322 2222222223444789999999766554 45
Q ss_pred EecCeEEEEecCC--c----------ccccc-cccCCCCCCCeEEEEE-eeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 981 VHETQLAIYDASK--M----------ERIRQ-WTPQDALSAPISCAVY-SCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 981 ~~d~~i~v~d~~~--~----------~~~~~-~~~~~~h~~~v~~l~~-s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
-.|..|+++.-.- | ..+.. +.+|.+ ...|..+-| -|...|+++|+..|.|.||+-.+++.+..+.
T Consensus 355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN-~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN-SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred ecccceEEeccccccCCCCCCCcchhhccchhhccccc-ccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh
Confidence 5789999995432 2 11222 555554 556777765 5788999999999999999999999988888
Q ss_pred CCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1047 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
++..-|.|+.-+|. -.+|+++|-|..|+||...+.+
T Consensus 434 ------------gDr~VVNCLEpHP~-~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 434 ------------GDRHVVNCLEPHPH-LPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ------------cccceEeccCCCCC-CchhhccCCccceeeecCCccc
Confidence 33446788998995 6789999999999999885554
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=3.4e-13 Score=141.57 Aligned_cols=246 Identities=14% Similarity=0.164 Sum_probs=174.2
Q ss_pred CeeEEEeccCCCeEEEEeCCeEEEEECCCceEE------EEeeCCCCCeeEEEE-----cCCCCCEEEEEeCCCcEEEEe
Q 001190 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVM------TTFMSPPPASTFLAF-----HPQDNNIIAIGTEDSTIHIYN 901 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~------~~~~~~~~~v~~l~~-----s~~d~~~lasg~~dg~v~iwd 901 (1128)
.++...++-.|.+|+..-...+.+|+...+..+ +.+++. ..+|=+| .+ ++--|..|-.-|.|++.|
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~-~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATP-KGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCC--CCceecccccccCC-CCcceEEeeccCceEEec
Confidence 455666677888888887888999988753321 122221 1223333 33 555677888899999998
Q ss_pred cccceeeeccc----ccccCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCc-----------ccceeEEeecCCCC---
Q 001190 902 VRVDEVKSKLK----GHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWE-----------KRKSVTIHIPAGKT--- 962 (1128)
Q Consensus 902 ~~~~~~~~~l~----~h~~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~--- 962 (1128)
....+..+.+. -....|+++.|-|.+. .++.+-.+|.+.+||..--. .-..+.+.....+.
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rN 281 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRN 281 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCC
Confidence 77633222121 1236899999998655 44456678999999763210 00111111111110
Q ss_pred --------CCCccEEEEcCCCCEEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEE
Q 001190 963 --------PTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGV 1033 (1128)
Q Consensus 963 --------~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~v 1033 (1128)
...+...+|+|||++||+. .||.++|+|..+.+.+..+.-- -+...|++|||||+||++|++|--|.|
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY---FGGLLCvcWSPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY---FGGLLCVCWSPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh---ccceEEEEEcCCccEEEecCCcceEEE
Confidence 1578899999999999985 5999999999988877665543 678999999999999999999999999
Q ss_pred EecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecC-----------------------------------------
Q 001190 1034 FDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL----------------------------------------- 1072 (1128)
Q Consensus 1034 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----------------------------------------- 1072 (1128)
|.+...+++++-. +|..+|..|+|.|-
T Consensus 359 wSf~erRVVARGq------------GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~ 426 (636)
T KOG2394|consen 359 WSFEERRVVARGQ------------GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSS 426 (636)
T ss_pred EEeccceEEEecc------------ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccc
Confidence 9999999998866 88889999999721
Q ss_pred ------CCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1073 ------EPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1073 ------~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
....|.+.+.|-++++||+.+...
T Consensus 427 ~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 427 FNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred cccccceEEEeecccccceEEEEecchhhc
Confidence 123578999999999999998764
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.1e-12 Score=131.26 Aligned_cols=261 Identities=11% Similarity=0.115 Sum_probs=164.0
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
....|++++|-|.+...++.+..+.|.+|.....-- ... .++ .. +......+...+| .+|+++.+.+|
T Consensus 139 sQrnvtclawRPlsaselavgCr~gIciW~~s~tln-----~~r--~~~---~~-s~~~~qvl~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLN-----ANR--NIR---MM-STHHLQVLQDPGH-NPVTSMQWNED 206 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecceeEEEEcCcccc-----ccc--ccc---cc-cccchhheeCCCC-ceeeEEEEcCC
Confidence 345688999999877677666777899997653210 000 000 00 0011112222224 78999999999
Q ss_pred CCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 843 DSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 843 g~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
|..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|..+.-|+..++|......-.....--++.|..
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence 99999998 56799999999988766655677899999999 9999999999999999955433222222334469999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcccce-----------eEEe-------ecCCCCCCCccEEEEcCCCCEEEEEe
Q 001190 921 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKS-----------VTIH-------IPAGKTPTGDTRVQFNADQVRMLVVH 982 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~-----------~~~~-------~~~~~~~~~v~~v~~s~d~~~l~~~~ 982 (1128)
..|+|+|++|+.+.. |.-++|.+...++-.. .... ........++.+++|+|.|.+|++.-
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 999999997665442 3345555432111100 0000 00011126788999999999999964
Q ss_pred c---------CeEEEEecCCcccccccccCCCCCCCeEEEEEee---CCCEEEEEecCCcEEEEecC
Q 001190 983 E---------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSC---NSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 983 d---------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
. ..|.+||....-.+...............++|+| +|.+|..+=.-|.+.-|++.
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 2 2366777665444332211111123345666766 56677677677777777653
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.4e-12 Score=148.53 Aligned_cols=237 Identities=11% Similarity=0.095 Sum_probs=156.0
Q ss_pred eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeC---CCeEEEEEccCCCcceec
Q 001190 368 EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQH 444 (1128)
Q Consensus 368 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~ 444 (1128)
.|.+||.+.+... .+..+...+.+.+|||||+.||..+. +..|.+|++.+|+...
T Consensus 180 ~l~~~d~dg~~~~--------------------~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-- 237 (429)
T PRK03629 180 ELRVSDYDGYNQF--------------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-- 237 (429)
T ss_pred eEEEEcCCCCCCE--------------------EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--
Confidence 6888887754432 14456778999999999999997642 4579999998876432
Q ss_pred eeecccccceeEEEEecCCCeEEEEEecCCC--eEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec-cCcEE
Q 001190 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIK 521 (1128)
Q Consensus 445 ~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~ 521 (1128)
+....+.+...+|+|||+. ++++.+.++ .|.+||..+..+..+..+...+....|+| ||+.|+..+. ++...
T Consensus 238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRPQ 312 (429)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC--CCCEEEEEeCCCCCce
Confidence 2223334557899999995 233444454 58899943334455555555677788876 6677766654 45556
Q ss_pred EE--ecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCE
Q 001190 522 AW--LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (1128)
Q Consensus 522 ~w--d~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1128)
+| ++..+. ...+...........|+|||++++..+.. ++...|.+||+.+++... +.... ......|+|||+.
T Consensus 313 Iy~~d~~~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~~ 387 (429)
T PRK03629 313 VYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGTM 387 (429)
T ss_pred EEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCCE
Confidence 66 554433 23344444456678999999999887642 235678999998887543 33221 2345789999999
Q ss_pred EEEEECCCc---EEEEECCCCeeeEEEecCCCCCCcceEEEcC
Q 001190 600 FLAVGEDSQ---IKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 600 l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (1128)
|+.++.++. ++++++. |.....+..+ ...+...+|+|
T Consensus 388 i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~--~~~~~~p~Wsp 427 (429)
T PRK03629 388 VIYSSSQGMGSVLNLVSTD-GRFKARLPAT--DGQVKFPAWSP 427 (429)
T ss_pred EEEEEcCCCceEEEEEECC-CCCeEECccC--CCCcCCcccCC
Confidence 999887764 6777874 4444445433 33577888887
No 225
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.56 E-value=1.8e-10 Score=119.48 Aligned_cols=413 Identities=12% Similarity=0.110 Sum_probs=236.6
Q ss_pred CcccccCCCcccccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEE----ee--ccCeEEEEEccCCceeccccccccc
Q 001190 316 EEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV----GS--SNGEITLWELAMRDRLVSKPFKIWD 389 (1128)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~----gs--~d~~i~iwd~~~~~~~~~~~~~~~~ 389 (1128)
.++.|+...+ +|...-......+...|-+-|+...|+|||+.++.+ |+ ..+.+.+.+.+.|+..+.
T Consensus 51 D~IiFt~~Dd-lWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi------- 122 (668)
T COG4946 51 DRIIFTCCDD-LWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI------- 122 (668)
T ss_pred cEEEEEechH-HHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-------
Confidence 3466665555 899888888888888899999999999999965442 22 234566666677765431
Q ss_pred ccccCccccceeccCCCcceEE-EEEccCCCEEEEEeCCCe----EEEEEccCCCc-ceeceeecccccceeEEEEecCC
Q 001190 390 MAACSLPFQASIFKDVPISVSR-VAWSPDGNYVGVAFTKHL----IQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPN 463 (1128)
Q Consensus 390 ~~~~~~~~~~~~~~~h~~~V~~-l~~spdg~~las~~~d~~----i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~fs~d~ 463 (1128)
++-| ...+. .-|+|||+.|++...-.- -.+|.++.... .. .-.-++.+.+.+- ||
T Consensus 123 -----------TyfG--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e-----~LnlGpathiv~~-dg 183 (668)
T COG4946 123 -----------TYFG--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE-----PLNLGPATHIVIK-DG 183 (668)
T ss_pred -----------EEec--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee-----eccCCceeeEEEe-CC
Confidence 1122 33344 459999999988754322 23333332111 11 0123445555553 44
Q ss_pred CeEEEEEecCCC------------eEEEEe--cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC
Q 001190 464 KLLCVVTCGDDK------------LIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG 529 (1128)
Q Consensus 464 ~~~~l~s~s~d~------------~i~vWd--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~ 529 (1128)
. ++.|-.-- .=++|- ..|+....+..-.+.|.+-.+. .++..+....||.=.+|..+-.+
T Consensus 184 ~---ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldG 257 (668)
T COG4946 184 I---IVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDG 257 (668)
T ss_pred E---EEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCC
Confidence 3 33332211 124565 3332333332222223322111 11233334445554555443332
Q ss_pred ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc---c---cCC-ceeE---E-EEeC-CC
Q 001190 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F---RKK-SNGV---V-QFDT-TQ 597 (1128)
Q Consensus 530 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~-~v~~---~-~~~~-~~ 597 (1128)
.-......-....+=..+.||+.++... .|.|+++|..+.++...--+ . ... .+.- + .|++ +|
T Consensus 258 kDlrrHTnFtdYY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~G 332 (668)
T COG4946 258 KDLRRHTNFTDYYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNG 332 (668)
T ss_pred chhhhcCCchhccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCC
Confidence 2221111111233444578999998864 56799999887654332111 1 000 0111 1 1332 56
Q ss_pred CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCC-cEEEEEcccCccccccccCCccccc
Q 001190 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEAL 676 (1128)
Q Consensus 598 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~ 676 (1128)
++++..|. |...|.+...+-.++.- +...|.-..+..+++-++.|..|| .+-|++..+++. +.+
T Consensus 333 d~ia~VSR-GkaFi~~~~~~~~iqv~----~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~--kr~-------- 397 (668)
T COG4946 333 DYIALVSR-GKAFIMRPWDGYSIQVG----KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV--KRI-------- 397 (668)
T ss_pred cEEEEEec-CcEEEECCCCCeeEEcC----CCCceEEEEEccCCcceEEeccCCceEEEEecCCceE--EEe--------
Confidence 77777775 67777776655544432 223466677777888889999988 888998877621 110
Q ss_pred cCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEE
Q 001190 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVT 756 (1128)
Q Consensus 677 ~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~ 756 (1128)
T Consensus 398 -------------------------------------------------------------------------------- 397 (668)
T COG4946 398 -------------------------------------------------------------------------------- 397 (668)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeE
Q 001190 757 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1128)
Q Consensus 757 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 836 (1128)
...-+.|.++..+++|+.++++.....+.+.|+++ |......- ...+-|+.
T Consensus 398 ----e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn----------------------gnv~~idk---S~~~lItd 448 (668)
T COG4946 398 ----EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN----------------------GNVRLIDK---SEYGLITD 448 (668)
T ss_pred ----eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC----------------------CCeeEecc---cccceeEE
Confidence 11445678888889998888877776666665543 32211111 14566999
Q ss_pred EEeccCCCeEEEEe-CC----eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEe
Q 001190 837 IALSKNDSYVMSAT-GG----KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1128)
Q Consensus 837 ~~~s~dg~~la~~~-dg----~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~ 892 (1128)
++|+|+++++|.+- +| .|++||+.+++...... ....-.+-+|.| |+++|..-+
T Consensus 449 f~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 449 FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred EEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEe
Confidence 99999999999986 54 59999999888765433 333446778888 888776544
No 226
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.55 E-value=9.4e-09 Score=125.72 Aligned_cols=514 Identities=14% Similarity=0.131 Sum_probs=282.9
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEE----EccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLY----SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vw----d~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
..+.|.++.+-++...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+..+.++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 544432 11 2233466899999999999 56666667888887
Q ss_pred ecCCCeEEEecCCCCC-----eEEEeccCCCCccEEEEEeccCcE-E-EEecCCC-CceeeecCCCCeEEEEEEcCCCCe
Q 001190 481 ELSGRKLFNFEGHEAP-----VYSICPHHKENIQFIFSTAIDGKI-K-AWLYDTM-GSRVDYDAPGHWCTTMLYSADGSR 552 (1128)
Q Consensus 481 d~~g~~~~~~~~h~~~-----v~~~~~~~~~~~~~l~s~~~dg~i-~-~wd~~~~-~~~~~~~~~~~~i~~~~~s~~g~~ 552 (1128)
..+-.++....-+... -.++-|-... .++ -|+..+.. + +=+.... .....+. ....-..++|-.||++
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe-TQF--~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKE-TQF--HGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEY 223 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCccc-Ccc--CcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcE
Confidence 7666666555433221 1122221110 000 01100000 0 0000000 0001112 3335578999999999
Q ss_pred EEEeeeccC-C-CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC---CCcEEEEECCCCeeeEEEecC-
Q 001190 553 LFSCGTSKD-G-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDAE- 626 (1128)
Q Consensus 553 l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~- 626 (1128)
+++.+.... + ...+++|+-+ |.+..+-..-. +.-.+++|-|.|+.|++... ...|.+|..+. -.-..+...
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~-gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~ 300 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD-GLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRF 300 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEeccccCC-CccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCC
Confidence 998876322 2 5789999965 66555544322 24567899999999988763 45677777543 333333322
Q ss_pred -CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecc
Q 001190 627 -GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1128)
Q Consensus 627 -~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~ 705 (1128)
.....|..+.|++|+..||+...|. |.+|-..+-.=.+++. +.|
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe--------------i~~-------------------- 345 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE--------------IRF-------------------- 345 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE--------------EEc--------------------
Confidence 2344789999999999999987654 9999876541111100 000
Q ss_pred cCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCc-ceEEEeec
Q 001190 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA-VGLLALGS 784 (1128)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~ 784 (1128)
+ ....+..+.|+|.. ..|...+.
T Consensus 346 ----------------------------------------------------~----~~~~~~~~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 346 ----------------------------------------------------S----SSESVNFVKWDPEKPLRLHVLTS 369 (928)
T ss_pred ----------------------------------------------------c----CCCCCCceEECCCCCCEEEEEec
Confidence 0 11122236666643 33555555
Q ss_pred cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc-CCCeEEEEeCCeEEEEECCCce
Q 001190 785 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSATGGKISLFNMMTFK 863 (1128)
Q Consensus 785 dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~dg~i~vwd~~~~~ 863 (1128)
+|.+..+++. |+...+.. .+| |...+++.++.++.+-.+...-
T Consensus 370 ~g~~~~~~~~------------------~~v~~s~~------------------~~~~D~g~vaVIDG~~lllTpf~~a~ 413 (928)
T PF04762_consen 370 NGQYEIYDFA------------------WDVSRSPG------------------SSPNDNGTVAVIDGNKLLLTPFRRAV 413 (928)
T ss_pred CCcEEEEEEE------------------EEEEecCC------------------CCccCceEEEEEeCCeEEEecccccC
Confidence 5666665542 22211110 111 2233444445557766655432
Q ss_pred E-----EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee--------eccc----------ccccCeeE
Q 001190 864 V-----MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK--------SKLK----------GHQKRITG 920 (1128)
Q Consensus 864 ~-----~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--------~~l~----------~h~~~V~~ 920 (1128)
. ...+. -...|.+++|++ ++..+|+-..||.|.+|........ ..+. .-...+..
T Consensus 414 VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (928)
T PF04762_consen 414 VPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQ 491 (928)
T ss_pred CCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEE
Confidence 1 12222 356799999999 6766888999999999986543211 1111 12345788
Q ss_pred EEEcCCCCEEEEEcCC---CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCC-EEEEEecCeEEEEecCCccc
Q 001190 921 LAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV-RMLVVHETQLAIYDASKMER 996 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~d~~i~v~d~~~~~~ 996 (1128)
++|..+...++....+ ..+.++++...+......... . ....+..+...++.. .++-..+|.+..++......
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~ 568 (928)
T PF04762_consen 492 LAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESST-E--VDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELS 568 (928)
T ss_pred EEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEe-c--cCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCcc
Confidence 8888887766665554 578888885433211111111 0 113444444555554 33335588888666554332
Q ss_pred cc-ccccCCCCCCCeEEEEEeeCCC---EEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecC
Q 001190 997 IR-QWTPQDALSAPISCAVYSCNSQ---LVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1072 (1128)
Q Consensus 997 ~~-~~~~~~~h~~~v~~l~~s~dg~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1072 (1128)
.. .+.. ...-..+....+.. .++.-+..|.+++ .+..++ . .+++++.+.
T Consensus 569 ~~~~fp~----~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la----------------~--~~tSF~v~~- 621 (928)
T PF04762_consen 569 QIVKFPQ----PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA----------------S--NCTSFAVTD- 621 (928)
T ss_pred ccccCCC----CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe----------------c--CCceEEEEc-
Confidence 22 2221 12222333333322 3333334444443 222222 1 124454443
Q ss_pred CCCEEEEEECCCcEEEEcCC
Q 001190 1073 EPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1073 ~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
.+|+.......+++.++.
T Consensus 622 --~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 622 --SFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred --CEEEEEecCceEEEEECc
Confidence 456666667889999988
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=3.2e-12 Score=127.86 Aligned_cols=283 Identities=14% Similarity=0.184 Sum_probs=185.0
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-CCEEEEE
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVA 424 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~ 424 (1128)
.+..++|++.-- -+|++..|-.|+|||-.. +.... +-......|+|++|-|. ++.|+.|
T Consensus 100 dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred ceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCcceeeee
Confidence 478899998543 467888999999999665 22110 11123558999999995 4567777
Q ss_pred eCCCeEEEEEccCCCcc-e----------eceeecccccceeEEEEecCCCeEEEEEecC-CCeEEEEe-cCCCeEEEec
Q 001190 425 FTKHLIQLYSYAGSNDL-R----------QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNFE 491 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~-~----------~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~-d~~i~vWd-~~g~~~~~~~ 491 (1128)
+..| |.+|..+..-.. + +...-.+| .+|+++.|.+||. .+++++. |..|.||| .+|..+.-..
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence 7665 899987532111 1 11123355 6899999999999 6777765 56899999 6676654444
Q ss_pred CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
..-+.+.-+.|+| |+.+|+.+.-|+..++|+....--........+.|...+|+|+|++|+.... +...++-...
T Consensus 236 ~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceEEEEee
Confidence 4556788899977 6789999999999999965443333334444558999999999999887764 2333332211
Q ss_pred CC--Cc-----------eeeEec------c--ccCCceeEEEEeCCCCEEEEEECC--------CcEEEEECCCCeeeEE
Q 001190 572 SE--GT-----------IKRTYA------G--FRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNILTS 622 (1128)
Q Consensus 572 ~~--~~-----------~~~~~~------~--~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~ 622 (1128)
.. +. ++..+. + .-.+...+++|.|.|.++++.-.. +.|.+||....-.+..
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 11 00 111111 1 012357789999999999986533 3466788766544443
Q ss_pred E--ecCCCCCCcceEEEcC---CCCEEEEEEcCCcEEEEEc
Q 001190 623 T--DAEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 623 ~--~~~~~~~~v~~v~~sp---~~~~l~~~~~dg~i~iw~~ 658 (1128)
. ...++. ....+.|+| ++.+|.++-..|.+.-|.+
T Consensus 391 s~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 391 SYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 3 111221 245677776 6778888888888877765
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=7.8e-14 Score=146.26 Aligned_cols=239 Identities=15% Similarity=0.160 Sum_probs=165.4
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 419 (1128)
+|.+.|+|++|+.||. +|++||.|-.+.|||.-..+.++ .+-.||.+.|.|+.|-| +.+
T Consensus 48 GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllh------------------sI~TgHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLH------------------SISTGHTANIFSVKFVPYTNNR 108 (758)
T ss_pred cccceecceeecCCCC-EEeecCCcceEEeecchhcceee------------------eeecccccceeEEeeeccCCCe
Confidence 6999999999999999 89999999999999998766654 24789999999999999 678
Q ss_pred EEEEEeCCCeEEEEEccCCC-------cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC-CCeEE--
Q 001190 420 YVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS-GRKLF-- 488 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~-------~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~-g~~~~-- 488 (1128)
.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.. .+.++++||+|+-+| .+ -.+-.
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCccc
Confidence 89999999999999998521 12233346789999999999999965 799999999999999 33 11111
Q ss_pred -------EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-----CCCCeEEEEE-EcCCCCeEEE
Q 001190 489 -------NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHWCTTML-YSADGSRLFS 555 (1128)
Q Consensus 489 -------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-----~~~~~i~~~~-~s~~g~~l~~ 555 (1128)
.+...--...++.++|.. ..+|++|+.|-..++||.+.......-. .......|+. |+|.+-
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---- 262 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---- 262 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----
Confidence 111122245678888874 4799999999999999964322111100 0011111221 222221
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
.. .++.+ .... ...+-+.|+|+|..|++.-..-.|+++|+..++....+.
T Consensus 263 kn----~~gn~----------~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 263 KN----SQGNL----------DRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cC----ccccc----------ccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 00 01100 0000 124557899999887776666689999998887665543
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.6e-12 Score=148.33 Aligned_cols=225 Identities=14% Similarity=0.121 Sum_probs=150.9
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCC---CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+|+... +....+.+...+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44577889999999999999987643 359999999886543 3334455678999999995 344677788777
Q ss_pred EEe--cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec-cCcEEEEecCCCC-ceeeecCCCCeEEEEEEcCCCCeEE
Q 001190 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 479 vWd--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~-~~~~~~~~~~~i~~~~~s~~g~~l~ 554 (1128)
+|. ..+.....+..+.+......|++ ||+.|+..+. +|...+|.++... ....+...+.......|||||++|+
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 776 55555667766666666777866 6677765554 5677777665322 2222223333445678999999998
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC---cEEEEECCCCeeeEEEecCCCCCC
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
..+.. .+...|.+||+.+++........ ......|+|+++.|+.++.++ .+++.+. ++.....+..+. +.
T Consensus 344 ~~s~~-~g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~--g~ 416 (427)
T PRK02889 344 YISRV-GGAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG--GD 416 (427)
T ss_pred EEEcc-CCcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC--CC
Confidence 77632 23457999999888765433221 235678999999998887543 3566666 455555554332 25
Q ss_pred cceEEEcCC
Q 001190 632 LPRLRFSKE 640 (1128)
Q Consensus 632 v~~v~~sp~ 640 (1128)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 677788773
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=3.2e-12 Score=146.90 Aligned_cols=222 Identities=12% Similarity=0.039 Sum_probs=152.7
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeC---CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCe--
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~-- 476 (1128)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++... +..+.+.+...+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL----VGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE----eecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 5668889999999999999998764 4689999999886432 4566777889999999995 3456666665
Q ss_pred EEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec-cC--cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeE
Q 001190 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 477 i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
|.+||..+.....+..+........|++ ||+.|+..+. +| .|.+||+..+... .+......+....|+|||+.|
T Consensus 272 Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 272 IYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred EEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEE
Confidence 7777854555566776766667778866 6677776653 33 5777777654433 333334456778899999999
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC------CcEEEEECCCCeeeEEEecCC
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED------SQIKFWDMDNVNILTSTDAEG 627 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~ 627 (1128)
+..... .+...|.+||..++.. +.+... ..+....|+|||+.|+..+.+ ..++++|+.++.. ..+...+
T Consensus 349 a~~~~~-~~~~~i~~~d~~~~~~-~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~ 423 (435)
T PRK05137 349 AFTKQG-GGQFSIGVMKPDGSGE-RILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG 423 (435)
T ss_pred EEEEcC-CCceEEEEEECCCCce-EeccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC
Confidence 887632 2346789999865543 333221 135668899999998876542 3688888876654 3333222
Q ss_pred CCCCcceEEEcC
Q 001190 628 GLPNLPRLRFSK 639 (1128)
Q Consensus 628 ~~~~v~~v~~sp 639 (1128)
.+...+|+|
T Consensus 424 ---~~~~p~Wsp 432 (435)
T PRK05137 424 ---DASDPAWSP 432 (435)
T ss_pred ---CccCcccCC
Confidence 356677776
No 231
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.53 E-value=7.2e-09 Score=126.72 Aligned_cols=572 Identities=11% Similarity=0.117 Sum_probs=305.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEE----EccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLW----ELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
..+.|.++.|-++.. -++.+..+|.|.+. +..+.... ....-+.+|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E--------------------~VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIE--------------------IVGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeE--------------------EEEEEcCcEEEEEECCCc
Confidence 456899999999987 45777889999999 44443322 133456799999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEEEEe-cCCCeE--------
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRKL-------- 487 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~vWd-~~g~~~-------- 487 (1128)
..||..+.++++.+.+- +-+.+.. ..+.++ |.. ..++.|..+.=.-+. ..|+..
T Consensus 133 Ella~vT~~~~l~~mt~-~fd~i~E-------------~~l~~~~~~~~-~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTR-DFDPISE-------------VPLDSDDFGES-KHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred CEEEEEeCCCEEEEEec-cceEEEE-------------eecCccccCCC-ceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 99999999998877642 2222211 111111 000 133333221111111 112210
Q ss_pred ------EEecCCCCCeEEEeccCCCCccEEEEEec---c---CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 488 ------FNFEGHEAPVYSICPHHKENIQFIFSTAI---D---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 488 ------~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d---g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
..+. +...-..++| .+||.++++.+. . ..+|+|+-+ +....+...-.+--.+++|-|.|++|++
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred CCccccCccc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEE
Confidence 1122 3333445666 668999998875 2 579999753 3333333333334467899999999998
Q ss_pred eeeccCCCceEEEEeCCCCceeeEecc---ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeE--EEecCCCCC
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAG---FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STDAEGGLP 630 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~~~~~ 630 (1128)
... ..+...|.+|.- +|-.-..|.. .....+..+.|++++..|+..-.|. |.+|...+..... .+..... .
T Consensus 274 ~q~-~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~ 349 (928)
T PF04762_consen 274 SQR-LPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-E 349 (928)
T ss_pred EEE-cCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-C
Confidence 875 333566777764 3433333332 2334688899999999999977665 9999998876433 3332222 2
Q ss_pred CcceEEEcCC-CCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCC
Q 001190 631 NLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1128)
Q Consensus 631 ~v~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (1128)
.+..+.|+|. ...|.+.+.+|.+..++..-..........+ -.++..--||..+
T Consensus 350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~--------D~g~vaVIDG~~l----------------- 404 (928)
T PF04762_consen 350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPN--------DNGTVAVIDGNKL----------------- 404 (928)
T ss_pred CCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCcc--------CceEEEEEeCCeE-----------------
Confidence 4556999994 5567777777887766543210000000000 0111222233222
Q ss_pred CCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeE
Q 001190 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK 789 (1128)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 789 (1128)
.+-.+....-+.......+. ....|..++|++++..+++...||.+.
T Consensus 405 -----------------------------llTpf~~a~VPPPMs~~~l~----~~~~v~~vaf~~~~~~~avl~~d~~l~ 451 (928)
T PF04762_consen 405 -----------------------------LLTPFRRAVVPPPMSSYELE----LPSPVNDVAFSPSNSRFAVLTSDGSLS 451 (928)
T ss_pred -----------------------------EEecccccCCCchHhceEEc----CCCCcEEEEEeCCCCeEEEEECCCCEE
Confidence 11111111112222111111 346899999999999899999999999
Q ss_pred eeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeC----CeEEEEECCCce--
Q 001190 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG----GKISLFNMMTFK-- 863 (1128)
Q Consensus 790 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d----g~i~vwd~~~~~-- 863 (1128)
+|.+................ +... ........ .....+..++|..+..+++.... ..+.+++....+
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (928)
T PF04762_consen 452 IYEWDLKNMWSVKPPKLLSS---ISLD--SMDISDSE--LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS 524 (928)
T ss_pred EEEecCCCcccccCcchhhh---cccc--cccccccc--cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc
Confidence 99866543211000000000 0000 00000000 13456788999888877776653 358888774332
Q ss_pred -EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee-eecccccccCeeEEEEcCCC--CEEEEEcCCCcE
Q 001190 864 -VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQKRITGLAFSTSL--NILVSSGADAQL 939 (1128)
Q Consensus 864 -~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~--~~l~s~~~Dg~i 939 (1128)
.......-.+.+..+...+ +...++.-..+|.+...+...... +..|..-...+..+.+.... ..++.-+..|.+
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~L 603 (928)
T PF04762_consen 525 ASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRL 603 (928)
T ss_pred eeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEE
Confidence 2333333344555555555 444466677799888666554322 12333222222222222222 144444444544
Q ss_pred EEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecC-CcccccccccCCC--CCCCeEEEEEe
Q 001190 940 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS-KMERIRQWTPQDA--LSAPISCAVYS 1016 (1128)
Q Consensus 940 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~-~~~~~~~~~~~~~--h~~~v~~l~~s 1016 (1128)
.+ +. .. +. ..++++++. +..++++.....+++.++. ............. +...+..+
T Consensus 604 y~---n~-~~-----la-------~~~tSF~v~-~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~V--- 663 (928)
T PF04762_consen 604 YA---NS-RL-----LA-------SNCTSFAVT-DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRV--- 663 (928)
T ss_pred EE---CC-EE-----Ee-------cCCceEEEE-cCEEEEEecCceEEEEECcCchhhcccccCccccccccccccC---
Confidence 43 11 11 11 455666663 3334445567889999887 1111111111000 01222332
Q ss_pred eCCCEEEEEecCCcEEEEecCCCceEEE
Q 001190 1017 CNSQLVFATFCDGNIGVFDADTLRLRCY 1044 (1128)
Q Consensus 1017 ~dg~~l~t~~~dg~i~vwd~~~~~~~~~ 1044 (1128)
.-|..|+++--...=.|..+..|.+...
T Consensus 664 ERGsriVt~vp~~~~vVLQmPRGNLEtI 691 (928)
T PF04762_consen 664 ERGSRIVTAVPSDTSVVLQMPRGNLETI 691 (928)
T ss_pred ccCCEEEEEeCCCceEEEEcCCCchhhh
Confidence 3466777766555666778888776443
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.7e-12 Score=147.79 Aligned_cols=236 Identities=12% Similarity=0.058 Sum_probs=151.5
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEee--ccCeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|-.+...........+...+.+.+|||||+.++.+.. .+..|.+|++.+|+... +..
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~ 240 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 240 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccC
Confidence 44444323333334457778999999999996554432 24579999998876432 222
Q ss_pred CCcceEEEEEccCCCEEEEE-eCCC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEec-CCCeEEEE
Q 001190 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVW 480 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s-~d~~i~vW 480 (1128)
..+.+..++|||||+.|+.. +.+| .|.+||+++++..+ +..+...+....|+|||+. |+..+ .++...+|
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy 314 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVY 314 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEE
Confidence 23335568999999999865 3344 58899999876433 4445567889999999994 54444 34444555
Q ss_pred --ecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc---CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 481 --d~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
|..+.....+..+........|+| ||++|+..+.+ ..|.+||++++... .+.. ........|+|||+.|+.
T Consensus 315 ~~d~~~g~~~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 315 KVNINGGAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIY 390 (429)
T ss_pred EEECCCCCeEEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEE
Confidence 544444455544444556677766 66777766543 35788888776543 2332 223456789999999998
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
.+.++ +...+.++++ +|+....+.++.. .+...+|+|
T Consensus 391 ~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 87532 2445788887 4555566766554 566677776
No 233
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=5.6e-13 Score=140.00 Aligned_cols=118 Identities=22% Similarity=0.398 Sum_probs=106.3
Q ss_pred CCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee
Q 001190 831 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 909 (1128)
...|...+|||||++||+.+ ||.++|||..+.+++..++.--+...|++||| ||++|++|++|--|.||.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 44688999999999999998 99999999999999988888888999999999 99999999999999999999999999
Q ss_pred cccccccCeeEEEEcC-----------------------------------CC-------------CEEEEEcCCCcEEE
Q 001190 910 KLKGHQKRITGLAFST-----------------------------------SL-------------NILVSSGADAQLCV 941 (1128)
Q Consensus 910 ~l~~h~~~V~~l~~s~-----------------------------------d~-------------~~l~s~~~Dg~i~i 941 (1128)
.-.||..-|..|+|.| ++ -++.|++.|..+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 01 25778899999999
Q ss_pred EECCCCcc
Q 001190 942 WSIDTWEK 949 (1128)
Q Consensus 942 wd~~~~~~ 949 (1128)
||+.....
T Consensus 449 WDlteD~L 456 (636)
T KOG2394|consen 449 WDLTEDVL 456 (636)
T ss_pred Eecchhhc
Confidence 99986543
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.6e-12 Score=147.31 Aligned_cols=238 Identities=14% Similarity=0.116 Sum_probs=157.0
Q ss_pred CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC---CeEEEEEccCCCccee
Q 001190 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQ 443 (1128)
Q Consensus 367 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~vwd~~~~~~~~~ 443 (1128)
..|.|||...+... .+..|...+.+.+|||||+.|+.++.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46888987644321 155677789999999999999988743 469999998876432
Q ss_pred ceeecccccceeEEEEecCCCeEEEEEecCCC--eEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe-ccCc-
Q 001190 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK- 519 (1128)
Q Consensus 444 ~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~- 519 (1128)
+..+.+...+.+|+|||+. ++++.+.++ .|.+||..+..+..+..+.......+|++ ||+.|+..+ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~ 316 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRP 316 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCc
Confidence 3344455668899999995 334555555 69999944444556666665556778866 667777665 4455
Q ss_pred -EEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCC
Q 001190 520 -IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1128)
Q Consensus 520 -i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1128)
|.++++..+.. ..+...+......+|+|||+.++.... .++...|.+||+.+++......+. ......|+|+|+
T Consensus 317 ~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG~ 391 (433)
T PRK04922 317 QIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNGS 391 (433)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeEECCCCC---CCCCceECCCCC
Confidence 55555554433 233333444557899999999988753 223457999999888765332221 234568999999
Q ss_pred EEEEEEC---CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC
Q 001190 599 HFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 599 ~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (1128)
+++..+. .+.|++++...+ ....+.... ..+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGR-VRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCC-ceEEcccCC--CCCCCCccCC
Confidence 9888765 346888888554 344443322 2466777776
No 235
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.50 E-value=1.6e-13 Score=131.56 Aligned_cols=171 Identities=18% Similarity=0.222 Sum_probs=133.4
Q ss_pred cchHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC---------HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHH
Q 001190 3 SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFN---------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIF 73 (1128)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~ 73 (1128)
...+|+.|||++||...||.++|..+.+|+|+... -..+|.+|..|+-++|++.++.+.+..-++... +.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~-l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE-LF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh-HH
Confidence 45789999999999999999999999999999772 568899999999999999999985443333333 89
Q ss_pred HHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcc-cCCchHHHHHHHHHHHhhcc
Q 001190 74 FEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSK-YGDTKTARGIMLIELKKLIE 152 (1128)
Q Consensus 74 ~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~-~~~~~~~r~~l~~~l~~~~~ 152 (1128)
|.+++|+++||+..+..++|+.|++.++.|+...+++.+++|...|.+..++.....+- +-=....|.+++..++..|-
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL 182 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAIL 182 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888899999998877655543222110 00134568899999888774
Q ss_pred cCcccccccCCCCCChHHHHHHHHHHHHHH
Q 001190 153 ANPLFRDKLAFPTLKSSRLRTLINQSLNWQ 182 (1128)
Q Consensus 153 ~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 182 (1128)
...= . -...+|..|++.-++.|
T Consensus 183 ~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 183 ASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHhc---c-----cccchHHHHHHHHHHHH
Confidence 4220 0 01347888887666666
No 236
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=1.4e-13 Score=141.96 Aligned_cols=286 Identities=15% Similarity=0.201 Sum_probs=217.4
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
+...+.|+.+|++ |+.|+..|.|-.+||.++++..... -...|..+.|-.+.+++|++-
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhhh
Confidence 5678899999995 5667789999999999998875321 234788899999999998874
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccC
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~ 504 (1128)
...+.|||-.. ..+.. +..| ..|..+.|.|.-- +|++++..|.++.-| ..|+.+..+..-.+.+..++-.|
T Consensus 190 -K~y~yvYD~~G-tElHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 190 -KKYVYVYDNNG-TELHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred -hceEEEecCCC-cEEee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 55789999765 33442 3333 4699999999877 899999999999999 89999999988888888888766
Q ss_pred CCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecccc
Q 001190 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1128)
Q Consensus 505 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 584 (1128)
- ...+-+|...|+|.+|.....+....+..|.++|.++++.++|+++++.|. |..++|||++....+.++....
T Consensus 262 ~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp~ 335 (545)
T KOG1272|consen 262 Y--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTPH 335 (545)
T ss_pred c--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecCC
Confidence 4 468899999999999999888888888899999999999999999999985 8999999999888776666522
Q ss_pred CCceeEEEEeCCCCEEEEEECCCcEEEEEC-CC--CeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDM-DN--VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~--~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
....+++|..| +++++....|.||.- -. +..-..+-.|.-...|..+.|.|-...|-+|...|.-.+.-.-.|
T Consensus 336 --~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 336 --PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred --Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 45667787644 555566668999942 22 122222222333347899999998778888887776666544444
Q ss_pred ccccccccC
Q 001190 662 LRSLRAVEN 670 (1128)
Q Consensus 662 ~~~~~~~~~ 670 (1128)
...+..++.
T Consensus 412 ePN~Ds~e~ 420 (545)
T KOG1272|consen 412 EPNYDSLED 420 (545)
T ss_pred CCCcchhcc
Confidence 443333333
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4e-12 Score=145.14 Aligned_cols=237 Identities=18% Similarity=0.147 Sum_probs=150.5
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeecc--CeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|-.+...........+.+.+.+.+|||||+.++.+...+ ..|.+||+.+|+... +..
T Consensus 178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~ 237 (427)
T PRK02889 178 LQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VAN 237 (427)
T ss_pred EEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eec
Confidence 5554443333444556888999999999999554443222 369999998886532 222
Q ss_pred CCcceEEEEEccCCCEEEE-EeCCCeEEEEEc--cCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 405 VPISVSRVAWSPDGNYVGV-AFTKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las-~~~d~~i~vwd~--~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..+.+.+.+|||||+.|+. .+.+|...||.+ .++. .+ .+..|.+.+....|+|||+. +++++..++...+|.
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYR 312 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEE
Confidence 3445678999999998874 567777667655 4443 33 35556666778899999995 233444456667776
Q ss_pred --cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccC---cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 482 --LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 482 --~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
..+.....+..+.......+|+| +|++|+..+.++ .|.+||+.++..... .. ........|+|||+.|+..
T Consensus 313 ~~~~~g~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 313 MPASGGAAQRVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGRYILYA 388 (427)
T ss_pred EECCCCceEEEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCCEEEEE
Confidence 34433433332333344567766 678888776554 699999877654432 22 2334678999999999988
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
...+ +...+++.+. +++....+..+.+ .+...+|+|
T Consensus 389 ~~~~-g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 389 TQQG-GRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EecC-CCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 7532 3455777777 4555555554333 455566665
No 238
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.48 E-value=1e-11 Score=122.74 Aligned_cols=237 Identities=15% Similarity=0.219 Sum_probs=167.3
Q ss_pred CCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCC--CeeEEEEcCCCCCEEEE-EeCC------CcEEEEec
Q 001190 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPP--ASTFLAFHPQDNNIIAI-GTED------STIHIYNV 902 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~l~~s~~d~~~las-g~~d------g~v~iwd~ 902 (1128)
....+++|..|...+++|.+...+||+++-.+.......+.+ .+..+-|- .++||. |+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999998899999976544333222222 23333332 234443 3332 47999997
Q ss_pred ccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC-CcccceeEEeecCCCCCCCccEEEEcC--CCCEEE
Q 001190 903 RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-WEKRKSVTIHIPAGKTPTGDTRVQFNA--DQVRML 979 (1128)
Q Consensus 903 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~v~~s~--d~~~l~ 979 (1128)
...+++.++. -..+|.+|.+.++ .|+..- .+.|+||.... -+++..+.... .+... ++..| +..+|+
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~----NPkGl--C~~~~~~~k~~La 152 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRS----NPKGL--CSLCPTSNKSLLA 152 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeeccc----CCCce--EeecCCCCceEEE
Confidence 6777777776 5688999999876 455444 56899999984 33333322221 11222 33344 333333
Q ss_pred E-E-ecCeEEEEecCCcccc--cccccCCCCCCCeEEEEEeeCCCEEEEEecCCc-EEEEecCCCceEEEeCCCCCCCCc
Q 001190 980 V-V-HETQLAIYDASKMERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCDGN-IGVFDADTLRLRCYIAPSTYLSPS 1054 (1128)
Q Consensus 980 ~-~-~d~~i~v~d~~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~ 1054 (1128)
. | .-|.|+|-|+...+.- ..+ .+|.+.|.|++++.+|..+||++..|+ |+|||..+|+.+..++..
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I---~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG------ 223 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSII---NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG------ 223 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEE---EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC------
Confidence 3 3 2689999999876652 233 346999999999999999999999997 899999999999998843
Q ss_pred ccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1055 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1055 ~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
.....+.+++|+| +..+|+++|+-|+|+||.+....
T Consensus 224 ----~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 224 ----VDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ----CchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 3455689999999 69999999999999999988754
No 239
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=6.3e-11 Score=126.19 Aligned_cols=282 Identities=11% Similarity=0.121 Sum_probs=184.4
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
...++..++|++|+ ++|.+ .+..|.|++..++..+.. --...++++-|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34478899999998 66664 678999999988764321 11227899999999999986
Q ss_pred E-----eCC-----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCC
Q 001190 424 A-----FTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (1128)
Q Consensus 424 ~-----~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h 493 (1128)
= ..+ -.+.+|+++++.... .+......-++..|+.|.. ++.=-..+.+.+|+..+.....-.-|
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~~kl~ 164 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQHKLS 164 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCccceeeeee
Confidence 3 122 347899999953322 1222222227999999987 34334457899999333222222336
Q ss_pred CCCeEEEeccCCCCccEEEE-----EeccCcEEEEecCCCCceeeecC---CCCeEEEEEEcCCCCeEEEee-ec-----
Q 001190 494 EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYDA---PGHWCTTMLYSADGSRLFSCG-TS----- 559 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~~wd~~~~~~~~~~~~---~~~~i~~~~~s~~g~~l~~~~-~~----- 559 (1128)
...|+.+.+++.+.-..+++ .+.-+.+++|.+........+.. -...-..+.|++-|.-|++.. .+
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 77889999988755555555 34557899997752221111110 011234577888777544332 21
Q ss_pred --cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEE--ECCCcEEEEECCCCeeeEEEecCCCCCCcceE
Q 001190 560 --KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1128)
Q Consensus 560 --~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1128)
-.++..+++.++..... .+.....++|.++.|+++++.++++ -.-..+.|||++ +.++..+.. ++=+++
T Consensus 245 ~SYYGEq~Lyll~t~g~s~--~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESV--SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNTA 317 (566)
T ss_pred ccccccceEEEEEecCceE--EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccce
Confidence 13567888888873333 3444444589999999999877664 467789999984 455555532 244899
Q ss_pred EEcCCCCEEEEEEc---CCcEEEEEcccC
Q 001190 636 RFSKEGNLLAVTTA---DNGFKILANAIG 661 (1128)
Q Consensus 636 ~~sp~~~~l~~~~~---dg~i~iw~~~~~ 661 (1128)
-|+|.|++++.++. .|.|-|||+.+.
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccch
Confidence 99999999998876 478999998774
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=3.1e-13 Score=139.46 Aligned_cols=232 Identities=14% Similarity=0.164 Sum_probs=193.7
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCC
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~ 485 (1128)
...-..+.++.+|++|+.|+..|.|-.+|+.++.....+. -...|.++.|..+.+ ++|.+ ..+.+.|||..|.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYDNNGT 201 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee----hhhhhhhhhhhcchH--HHHhh-hhceEEEecCCCc
Confidence 4466789999999999999999999999999987655332 345699999999888 55544 5789999999999
Q ss_pred eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCce
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 565 (1128)
.++.++.|. .|..+.|.|.. -+|++++..|.++.-|+.+++....+....+.+..++-+|-+..+-.|.. .|+
T Consensus 202 ElHClk~~~-~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRHI-RVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhcC-chhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 999998765 58888887743 57888889999999999999998888888889999999999888888774 899
Q ss_pred EEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEE
Q 001190 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1128)
Q Consensus 566 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 645 (1128)
|.+|.....+++..+..|.+ .|.++++.++|.++++.|.|..++|||++....+.++... + +...+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~--~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H--PASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C--Ccccccccccc-cee
Confidence 99999999999999999998 8999999999999999999999999999998877766542 2 45778888765 333
Q ss_pred EEEcCCcEEEEE
Q 001190 646 VTTADNGFKILA 657 (1128)
Q Consensus 646 ~~~~dg~i~iw~ 657 (1128)
. +....+.||.
T Consensus 350 ~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 350 L-SYGDHVQIWK 360 (545)
T ss_pred e-ecCCeeeeeh
Confidence 3 3455788985
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=4.8e-12 Score=145.12 Aligned_cols=227 Identities=15% Similarity=0.129 Sum_probs=146.2
Q ss_pred ceEEeecCCCcEEEEEEeCCCCcEEEEeec--cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 336 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
.......+...+.+.+|||||++++.+... +..|.+||+.+++... +..+.+...+.+
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~ 254 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPS 254 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCce
Confidence 344445678889999999999955444322 3479999998876532 223344556789
Q ss_pred EccCCCEEEE-EeCCC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEec-CCCe--EEEEecCCCeE
Q 001190 414 WSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKL--IKVWELSGRKL 487 (1128)
Q Consensus 414 ~spdg~~las-~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s-~d~~--i~vWd~~g~~~ 487 (1128)
|||||+.|+. .+.+| .|.+||+.+++..+ +..+.......+|+|||+. |+..+ .++. |.++|..+...
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----LTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----CccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCe
Confidence 9999998864 45555 59999999876432 4456666678999999994 44443 4554 66666333334
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccC---cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
..+..+.......+|++ +|++|+..+.++ .|.+||+.++... .+. +........|+|||++++..... .+..
T Consensus 329 ~~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~~ 403 (433)
T PRK04922 329 ERLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GGRG 403 (433)
T ss_pred EEeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CCce
Confidence 44433334445677866 667777665433 6889998776544 332 23345567999999998887643 3456
Q ss_pred eEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
.|++++... .....+..+.. .+...+|+|
T Consensus 404 ~L~~~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 404 VLAAVSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEEEECCC-CceEEcccCCC-CCCCCccCC
Confidence 788888854 44444543332 445556654
No 242
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=5.1e-12 Score=133.92 Aligned_cols=285 Identities=13% Similarity=0.136 Sum_probs=205.1
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCC--CcceEEEEE
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAW 414 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~ 414 (1128)
++..|+|...-+.+..||||+|++|+|..--.|++||+..-... +..| ...|.-.-+
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK---------------------FERhlDae~V~feiL 102 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK---------------------FERHLDAEVVDFEIL 102 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee---------------------eeecccccceeEEEe
Confidence 45556788899999999999999999999999999999765432 2223 234555566
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
|.|-..++.-..|.+|.+-.-. |...+ + .-...-.+++++.-... |+.++....|+-.+ ..|+-+..+...
T Consensus 103 sDD~SK~v~L~~DR~IefHak~-G~hy~----~-RIP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 103 SDDYSKSVFLQNDRTIEFHAKY-GRHYR----T-RIPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETD 174 (703)
T ss_pred ccchhhheEeecCceeeehhhc-Ceeee----e-ecCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccc
Confidence 7777777777778877654332 21111 0 01122344555543332 44444456788888 889999999888
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC------C-----CeEEEEEEcCCCCeEEEeeeccCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------G-----HWCTTMLYSADGSRLFSCGTSKDG 562 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~-----~~i~~~~~s~~g~~l~~~~~~~~~ 562 (1128)
.+.++++.+++. ..+|++|+.+|.|.+||.+.......+... . ..|+++.|+.+|-.+++|..
T Consensus 175 ~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---- 248 (703)
T KOG2321|consen 175 SGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---- 248 (703)
T ss_pred cccceeeeecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----
Confidence 889999998764 368999999999999999876655544322 1 25999999999999999885
Q ss_pred CceEEEEeCCCCceeeEeccccCCceeEEEEeCCC--CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
+|.+.+||+++.+++..-.....-++..+.|.+.+ +.+++. ....++|||-.+|+....+.... .++.+++-|+
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~ 324 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS---DLNDFCFVPG 324 (703)
T ss_pred CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC---CcCceeeecC
Confidence 89999999999988765543333457777776553 344443 45689999999999988876433 5899999999
Q ss_pred CCEEEEEEcCCcEEEEEccc
Q 001190 641 GNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~ 660 (1128)
+-++.++..++.+..|-+..
T Consensus 325 sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 325 SGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CceEEEecCCCcceeEEccc
Confidence 99999999888877665543
No 243
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.46 E-value=1.9e-11 Score=128.21 Aligned_cols=353 Identities=11% Similarity=0.078 Sum_probs=231.9
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
.-++..++|||.|+ +|++. .-..|.+|.-..+..+.. --...|..+.|||.++||.+
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~-~~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSE-HAAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcch-heehh-hccceEEccccchhheee---------------------eecCCceecccCcccceeee
Confidence 34789999999999 55654 456789998766553321 12347999999999999998
Q ss_pred EeCC---------------CeEEEEEccCCCcceeceeecccccc--ee-EEEEecCCCeEEEEEecCCCeEEEEecCCC
Q 001190 424 AFTK---------------HLIQLYSYAGSNDLRQHSQIDAHVGA--VN-DLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1128)
Q Consensus 424 ~~~d---------------~~i~vwd~~~~~~~~~~~~~~~h~~~--v~-~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~ 485 (1128)
=+.. ..+.|||+.+|..+.. +.+-..+ .+ -+.|+-|.+ +++=- -...+.|++.++.
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s---f~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~t~n 162 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS---FNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEITDN 162 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEee---ccccCCcccccceeeeeecch--hhhhh-ccCeEEEEecCCc
Confidence 6543 2499999999987764 4444444 55 788999988 33322 2457888884332
Q ss_pred eE-EEecCC-CCCeEEEeccCCCCccEEEE-----EeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 486 KL-FNFEGH-EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 486 ~~-~~~~~h-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
.. ..+..- ...|....|+|.+++..|+. .+.++++++|.+...........-...-..+.|.+.|+++++-..
T Consensus 163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM 242 (561)
T ss_pred cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEE
Confidence 21 111111 24577778888767666655 356789999998765555544443444467888899988775432
Q ss_pred c-------cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE--CCCcEEEEECCCCeeeEEEecCCCC
Q 001190 559 S-------KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 559 ~-------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
. .-++..++++++....+.... ... ++|...+|.|.++.+++.+ .+-.+.++|+... +...+...
T Consensus 243 t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~-~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~--- 316 (561)
T COG5354 243 THTKSNKSYFGESNLYLLRITERSIPVEK-DLK-DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ--- 316 (561)
T ss_pred EeeecccceeccceEEEEeecccccceec-ccc-ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc---
Confidence 1 124567888888744333222 323 3899999999998887755 6788999999776 44444322
Q ss_pred CCcceEEEcCCCCEEEEEEcC---CcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceeccc
Q 001190 630 PNLPRLRFSKEGNLLAVTTAD---NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1128)
.=+.+.|+|.+++++.++-| |.+-+|+..........+.+. ...-..|+|||+++-.......
T Consensus 317 -~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-------n~s~~~wspd~qF~~~~~ts~k------ 382 (561)
T COG5354 317 -KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-------NTSYCDWSPDGQFYDTDTTSEK------ 382 (561)
T ss_pred -ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC-------CceEeeccCCceEEEecCCCcc------
Confidence 23678899999999987764 679999987765444343332 2334568888887743322211
Q ss_pred CCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccc
Q 001190 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1128)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 786 (1128)
-..|..+++|++.... ....+.+.|.|.|++..+.+.+.
T Consensus 383 -------------------------~~~Dn~i~l~~v~g~~----------------~fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 383 -------------------------LRVDNSIKLWDVYGAK----------------VFELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -------------------------cccCcceEEEEecCch----------------hhhhhhccccCCcccceeeccCC
Confidence 1235788999986321 12456677888888777766654
No 244
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.1e-11 Score=142.45 Aligned_cols=236 Identities=13% Similarity=0.058 Sum_probs=153.9
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEee--ccCeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|..+...........|...|.+.+|||||++++.+.. .+..|.+||+.+|+... +..
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~ 243 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGN 243 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eec
Confidence 55555434444445568889999999999996544432 24689999998876532 444
Q ss_pred CCcceEEEEEccCCCEEEE-EeCCCe--EEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEec-CCC--eEE
Q 001190 405 VPISVSRVAWSPDGNYVGV-AFTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIK 478 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las-~~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s-~d~--~i~ 478 (1128)
+.+.+.+.+|||||+.|+. .+.++. |.+||+.+++..+ +..+.+......|+|||+. |+..+ .++ .|.
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy 317 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR----LTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLY 317 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE----ccCCCCccCceeEcCCCCE--EEEEECCCCCCeEE
Confidence 5667888999999998864 455554 7777888876432 5566667788999999995 44433 333 688
Q ss_pred EEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc---CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 479 vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+||..+.....+..+.+.+....|+| +|+.|+..+.+ ..|.+||++.... ..+. ....+..+.|+|||+.|+.
T Consensus 318 ~~d~~g~~~~~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~ 393 (435)
T PRK05137 318 VMNADGSNPRRISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMF 393 (435)
T ss_pred EEECCCCCeEEeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEE
Confidence 88855555556654555566677866 66777776543 3577788754433 2232 2335678899999999987
Q ss_pred eeeccCCC--ceEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 556 CGTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 556 ~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
.+...... ..++++|+..+.. ..+.. . ..+...+|+|
T Consensus 394 ~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~-~~~~~p~Wsp 432 (435)
T PRK05137 394 FRQTPGSGGAPKLYTVDLTGRNE-REVPT-P-GDASDPAWSP 432 (435)
T ss_pred EEccCCCCCcceEEEEECCCCce-EEccC-C-CCccCcccCC
Confidence 66422221 4688888876554 33332 1 1344455654
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=4.9e-12 Score=134.07 Aligned_cols=264 Identities=11% Similarity=0.177 Sum_probs=193.1
Q ss_pred ccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeec
Q 001190 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1128)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~ 809 (1128)
++|...-.|++||+...... +.. .-....|.-...+.|-..++.-..|..|.+..
T Consensus 68 AtG~YKP~ikvydlanLSLK-------FER-hlDae~V~feiLsDD~SK~v~L~~DR~IefHa----------------- 122 (703)
T KOG2321|consen 68 ATGTYKPQIKVYDLANLSLK-------FER-HLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA----------------- 122 (703)
T ss_pred EecccCCceEEEEcccceee-------eee-cccccceeEEEeccchhhheEeecCceeeehh-----------------
Confidence 45555577899998753211 111 00223344455566666667777777776642
Q ss_pred cceeccCCCccccccccCCCCCCCeeEEEecc-CCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEE
Q 001190 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888 (1128)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~l 888 (1128)
..|...... -+..-..++++. .-.++++|+...|.-++++.|..+..+....+.++++..++ -..+|
T Consensus 123 ------k~G~hy~~R-----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLl 190 (703)
T KOG2321|consen 123 ------KYGRHYRTR-----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLL 190 (703)
T ss_pred ------hcCeeeeee-----cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceE
Confidence 112111111 123344555553 44566666788899999999999999998889999999999 78899
Q ss_pred EEEeCCCcEEEEecccceeeeccc------cccc-----CeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEee
Q 001190 889 AIGTEDSTIHIYNVRVDEVKSKLK------GHQK-----RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 957 (1128)
Q Consensus 889 asg~~dg~v~iwd~~~~~~~~~l~------~h~~-----~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~ 957 (1128)
++|+.+|.|..||..+...+..+. .|.+ .|+++.|+.||-.++.|..+|.|.|||+.+.+. +..
T Consensus 191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-----l~~ 265 (703)
T KOG2321|consen 191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-----LLV 265 (703)
T ss_pred EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-----eee
Confidence 999999999999998876665543 2333 399999999999999999999999999998664 333
Q ss_pred cCCCCCCCccEEEEcCC--CCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEe
Q 001190 958 PAGKTPTGDTRVQFNAD--QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 958 ~~~~~~~~v~~v~~s~d--~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
.++....++..+.|-+. +..+++.+...++|||-.+|+....+.. ...+..+++-|++-+++++.+++.+..|=
T Consensus 266 kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp----t~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 266 KDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP----TSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred cccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc----cCCcCceeeecCCceEEEecCCCcceeEE
Confidence 33444478888888765 5677778888999999999999888877 56799999999999999999998888776
Q ss_pred cCCC
Q 001190 1036 ADTL 1039 (1128)
Q Consensus 1036 ~~~~ 1039 (1128)
+...
T Consensus 342 iP~L 345 (703)
T KOG2321|consen 342 IPSL 345 (703)
T ss_pred cccc
Confidence 6653
No 246
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=6.9e-11 Score=128.14 Aligned_cols=548 Identities=12% Similarity=0.108 Sum_probs=315.2
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCc------------ceeceeecccccceeEEEEecCCCeEEEEEec
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND------------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~------------~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s 472 (1128)
......|++|+....|+|.|+.||.++|..+.+... +..-.++.||.+.|.-+.|..+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 345788999999999999999999999998865322 122236889999999999998888 799999
Q ss_pred CCCeEEEEe-cCCCeEEEec--CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC
Q 001190 473 DDKLIKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (1128)
Q Consensus 473 ~d~~i~vWd-~~g~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (1128)
.+|.|.||- ..|.-...+. ...+.|.+++|.. +|..+...-.||.|.+=.++. ..++--...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDG-NRIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeecc-ceecchhcchheccceeeccc
Confidence 999999999 7776543332 2345678888854 778888888888887765543 222222333444567889999
Q ss_pred CCeEEEeeeccCCCceEEEEeCCCCc-------eeeEeccc---cCCceeEEEE--------eCCCCEEEEEECCCcEEE
Q 001190 550 GSRLFSCGTSKDGDSFLVEWNESEGT-------IKRTYAGF---RKKSNGVVQF--------DTTQNHFLAVGEDSQIKF 611 (1128)
Q Consensus 550 g~~l~~~~~~~~~~~~i~~wd~~~~~-------~~~~~~~~---~~~~v~~~~~--------~~~~~~l~~~s~dg~i~i 611 (1128)
.+.++.+-. .+.++++|....- +.....+. ....+..+.| -|+...++++-.+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 998887663 7889999865321 10011110 0012333333 357789999999999998
Q ss_pred EECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceee-eeecccc
Q 001190 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV-ALKVSAS 690 (1128)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~g~ 690 (1128)
-.-++......+... -.+....|+++|..|++++.+..-.- +.. .+.+ -++|-|.
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d--------------------~n~v~Fysp~G~ 299 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTD--------------------SNKVHFYSPYGH 299 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-ccc--------------------cceEEEeccchh
Confidence 876665444444322 25788999999999999986532100 000 0011 1122222
Q ss_pred cccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEE
Q 001190 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (1128)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 770 (1128)
.+ ..+.. ....|+++
T Consensus 300 i~------------------------------------------------------------gtlkv-----pg~~It~l 314 (1189)
T KOG2041|consen 300 IV------------------------------------------------------------GTLKV-----PGSCITGL 314 (1189)
T ss_pred he------------------------------------------------------------EEEec-----CCceeeee
Confidence 21 00111 22345555
Q ss_pred EEecCcceEEEeeccceeEeeeccccCC----------CCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 771 LYTNSAVGLLALGSNGVQKLWKWHRNEQ----------NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 771 ~~s~~g~~l~~~~~dg~i~lw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
+|-..|-.++. .-|+.|.+=++...-. ...+.......+..||..+.+.... .-....+++|.
T Consensus 315 sWEg~gLriA~-AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK------~V~~~~~~a~~ 387 (1189)
T KOG2041|consen 315 SWEGTGLRIAI-AVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK------TVTHFENMAFY 387 (1189)
T ss_pred EEcCCceEEEE-EecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh------hhcceeehhee
Confidence 55555443332 2234444433332100 0011111122355777777654332 22335677877
Q ss_pred cCCCeEEEEe-CCeEEEEEC-CCceEEE--Eee---CC--CCCeeEE--EEcCCCCCEEEEEeCCCcEEEEecccceeee
Q 001190 841 KNDSYVMSAT-GGKISLFNM-MTFKVMT--TFM---SP--PPASTFL--AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1128)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~-~~~~~~~--~~~---~~--~~~v~~l--~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 909 (1128)
.+--.|+.-. +|.+.-++. ++...+. .+. +. ...++.+ .|---++.+++.++.+ .+.+|.....+...
T Consensus 388 ~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s 466 (1189)
T KOG2041|consen 388 REHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNS 466 (1189)
T ss_pred cccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhh
Confidence 7666666554 566655522 1111111 111 10 1111111 1111156667777655 58899887665544
Q ss_pred cccc---cccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCe
Q 001190 910 KLKG---HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQ 985 (1128)
Q Consensus 910 ~l~~---h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~ 985 (1128)
.+.+ |...- |+-| ..-+++.|+++. ..+.. ..+. ..++..++.+ .++++++ ..|.
T Consensus 467 ~l~~~k~rkegr----~h~D--dtp~ga~d~~l~---ys~kt---------~~G~-~DpICAl~~s--dk~l~vareSG~ 525 (1189)
T KOG2041|consen 467 VLAGVKIRKEGR----FHGD--DTPEGAQDRTLE---YSTKT---------LLGS-KDPICALCIS--DKFLMVARESGG 525 (1189)
T ss_pred hhhhhhhccccc----ccCC--CCccchhhceee---cccee---------eccC-CCcceeeeec--ceEEEEEeccCc
Confidence 4433 21111 3322 233455665442 12111 1111 1566666654 3456665 4899
Q ss_pred EEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC---CCceEEEeCCCCCCCCcccCCCCcc
Q 001190 986 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD---TLRLRCYIAPSTYLSPSVLNGSQTV 1062 (1128)
Q Consensus 986 i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1128)
|.-|.+.+......... +..|.++++.-+...++.-.--|.+.+.|+. +|..+.-+. ....-
T Consensus 526 I~rySl~nv~l~n~y~~----n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~-----------~~err 590 (1189)
T KOG2041|consen 526 IYRYSLNNVVLTNSYPV----NPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIY-----------TSERR 590 (1189)
T ss_pred eEEEEecceeeeecccc----CchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeee-----------hhhhh
Confidence 99999998887776655 6788999999888889988888888888876 344433222 12223
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1063 YPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1063 ~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
.|-.+.|..+++ .+++-..-..+.|++-.+.+
T Consensus 591 DVWd~~Wa~dNp-~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 591 DVWDYEWAQDNP-NLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred hhhhhhhccCCc-hHHhhhhhceEEEecCcCcc
Confidence 345677776433 34444455566666655444
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=8.3e-11 Score=125.28 Aligned_cols=354 Identities=13% Similarity=0.112 Sum_probs=217.1
Q ss_pred cEEEEecCCCCceeeecCC---CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 519 KIKAWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 519 ~i~~wd~~~~~~~~~~~~~---~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
.+.+|..-..........+ ..+++..++|++|++++.+. +..+.|++..++..+.+.... .+..+.|+|
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP 83 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSP 83 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecc
Confidence 4566655432222222222 44578889999999999885 678999999888655544443 467799999
Q ss_pred CCCEEEEE-----EC-----CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCcccc
Q 001190 596 TQNHFLAV-----GE-----DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1128)
Q Consensus 596 ~~~~l~~~-----s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~ 665 (1128)
.+.+|.+- .. .-.+.+|+.+++.....+...... -++..|+.|..+.+- -..+.+.+|++.+.....
T Consensus 84 ~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~ 160 (566)
T KOG2315|consen 84 KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ 160 (566)
T ss_pred cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCcccee
Confidence 99988762 11 245779999997766666544332 268899998655432 335689999987743333
Q ss_pred ccccCCccccccCcceeeeeeccccc-ccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeE
Q 001190 666 RAVENPPFEALRTPIESVALKVSASS-AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1128)
Q Consensus 666 ~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (1128)
..+ +...|..+.++|.+.. .++..-+. ..+.-..+++|...
T Consensus 161 ~kl-------~~~~i~~f~lSpgp~~~~vAvyvPe-------------------------------~kGaPa~vri~~~~ 202 (566)
T KOG2315|consen 161 HKL-------SVSGITMLSLSPGPEPPFVAVYVPE-------------------------------KKGAPASVRIYKYP 202 (566)
T ss_pred eee-------eccceeeEEecCCCCCceEEEEccC-------------------------------CCCCCcEEEEeccc
Confidence 322 3345777788877432 22221111 12223556666655
Q ss_pred EEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCcccccc
Q 001190 745 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 824 (1128)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1128)
..........-.+ ....-..+.|.+-|.-|++.... |++.... ..-+..++.+.++. |......
T Consensus 203 ~~~~~~~~a~ksF-----Fkadkvqm~WN~~gt~LLvLast------dVDktn~----SYYGEq~Lyll~t~-g~s~~V~ 266 (566)
T KOG2315|consen 203 EEGQHQPVANKSF-----FKADKVQMKWNKLGTALLVLAST------DVDKTNA----SYYGEQTLYLLATQ-GESVSVP 266 (566)
T ss_pred cccccchhhhccc-----cccceeEEEeccCCceEEEEEEE------eecCCCc----cccccceEEEEEec-CceEEEe
Confidence 2222211111111 11122345566666544332211 1111000 11111122333333 2222212
Q ss_pred ccCCCCCCCeeEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeC---CCcEE
Q 001190 825 VAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---DSTIH 898 (1128)
Q Consensus 825 ~~~~~~~~~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~---dg~v~ 898 (1128)
+. ..++|.++.|+++|+-+++.. -.++.|||++ +..+..+ ..++-.++-|+| .|++++.++- -|.+.
T Consensus 267 L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 267 LL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDME 339 (566)
T ss_pred cC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceE
Confidence 22 578999999999999887775 3779999985 5666555 566778999999 8888887764 48999
Q ss_pred EEecccceeeecccccccCeeEEEEcCCCCEEEEEcC------CCcEEEEECCC
Q 001190 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA------DAQLCVWSIDT 946 (1128)
Q Consensus 899 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~------Dg~i~iwd~~~ 946 (1128)
|||+.+.+++..+..-.. +-+.|+|||.+++|+.. |..++||++..
T Consensus 340 vwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 999999999988876433 45889999999998864 67899999876
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=9e-10 Score=122.04 Aligned_cols=209 Identities=16% Similarity=0.212 Sum_probs=135.4
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCC-ceEEEE---ee----------CCCCCeeEEEEcCCCCCEEEEEe-CCC
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVMTT---FM----------SPPPASTFLAFHPQDNNIIAIGT-EDS 895 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~~---~~----------~~~~~v~~l~~s~~d~~~lasg~-~dg 895 (1128)
....++++|++++|+++. +|.|.++++.. +..... +. .......++.++| +++++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345678888888888886 67888888875 433222 11 1123578999999 887776654 445
Q ss_pred cEEEEecccce--ee--eccc-ccccCeeEEEEcCCCCEEEEE-cCCCcEEEEECC--CCcccceeEEeecCC-CC-CCC
Q 001190 896 TIHIYNVRVDE--VK--SKLK-GHQKRITGLAFSTSLNILVSS-GADAQLCVWSID--TWEKRKSVTIHIPAG-KT-PTG 965 (1128)
Q Consensus 896 ~v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~l~s~-~~Dg~i~iwd~~--~~~~~~~~~~~~~~~-~~-~~~ 965 (1128)
.|++|++.... +. ..+. .....-..++|+|+++++... -.++.|.++++. .+............. .. ...
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 22 1222 123456789999999977654 567889999998 443333333332211 11 136
Q ss_pred ccEEEEcCCCCEEEEEe--cCeEEEEecC-C-ccc--ccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEec--
Q 001190 966 DTRVQFNADQVRMLVVH--ETQLAIYDAS-K-MER--IRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDA-- 1036 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~~~--d~~i~v~d~~-~-~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~-- 1036 (1128)
...++++|||++|.++. .+.|.+|++. . +.. +..+... ......++++|||++|+++. .++.|.+|++
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 78899999999999975 7789999994 2 222 2223221 45579999999999999877 6678999876
Q ss_pred CCCceEEEe
Q 001190 1037 DTLRLRCYI 1045 (1128)
Q Consensus 1037 ~~~~~~~~~ 1045 (1128)
++|.+...-
T Consensus 324 ~tG~l~~~~ 332 (345)
T PF10282_consen 324 DTGKLTPVG 332 (345)
T ss_dssp TTTEEEEEE
T ss_pred CCCcEEEec
Confidence 577765544
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=1.6e-11 Score=122.21 Aligned_cols=343 Identities=14% Similarity=0.229 Sum_probs=214.7
Q ss_pred ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEEC-CCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE
Q 001190 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM-DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1128)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 653 (1128)
.+++.++|+.+ .+.....-|...-+++.+.|.+++||-- +.++.-..+.. ....++.++.+.++.+.|++|-..|++
T Consensus 15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceE
Confidence 34566777776 6666666677788999999999999954 44554443322 223467899999999999999999998
Q ss_pred EEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCC
Q 001190 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1128)
Q Consensus 654 ~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 733 (1128)
.-+.+.........
T Consensus 93 tefs~sedfnkm~~------------------------------------------------------------------ 106 (404)
T KOG1409|consen 93 TEFALSEDFNKMTF------------------------------------------------------------------ 106 (404)
T ss_pred EEEEhhhhhhhcch------------------------------------------------------------------
Confidence 87765432111100
Q ss_pred CCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeecccee
Q 001190 734 VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (1128)
Q Consensus 734 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 813 (1128)
++.| ..|...+..+.|+-....+++.+.|..+. |.-.
T Consensus 107 ----~r~~-------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~------------------- 143 (404)
T KOG1409|consen 107 ----LKDY-------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT------------------- 143 (404)
T ss_pred ----hhhh-------------------hhhhcceeeEEecCCceeEEEeccccceE-EEee-------------------
Confidence 0111 12777888888888888888888875543 3211
Q ss_pred ccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEE--ECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEE
Q 001190 814 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF--NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (1128)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vw--d~~~~~~~~~~~~~~~~v~~l~~s~~d~~~las 890 (1128)
+.|..+.... .....+++.+.-. +...|. .|.|.+- ......++.++.+|.+.+++++|.+ ..++|.+
T Consensus 144 --e~~~~lg~Y~----~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfS 214 (404)
T KOG1409|consen 144 --ESGNRLGGYN----FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFS 214 (404)
T ss_pred --ccCCcccceE----eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEe
Confidence 1111110000 0011111111111 333333 3444433 3345677889999999999999999 8899999
Q ss_pred EeCCCcEEEEecccce-eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEe-------------
Q 001190 891 GTEDSTIHIYNVRVDE-VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH------------- 956 (1128)
Q Consensus 891 g~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~------------- 956 (1128)
|..|..+.+||+.-++ ...++.+|.+.|..+...+--+.|.+++.||.|.+|+++........-..
T Consensus 215 g~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw 294 (404)
T KOG1409|consen 215 GASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW 294 (404)
T ss_pred ccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence 9999999999997553 34578899999999999888899999999999999999764332211100
Q ss_pred ------------ecCCCC---CCCccEEEEcCCCCEEEEEecCeEEEEecCCcccc-----cccccCCCCCCCeEEEEEe
Q 001190 957 ------------IPAGKT---PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERI-----RQWTPQDALSAPISCAVYS 1016 (1128)
Q Consensus 957 ------------~~~~~~---~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~-----~~~~~~~~h~~~v~~l~~s 1016 (1128)
....+. ...+...+-+....+...+.+-.+++-|.-..... ..-.+|+. ...|+++.+-
T Consensus 295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlq 373 (404)
T KOG1409|consen 295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQ 373 (404)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhh
Confidence 000000 01222222222222333333444555543321111 11122333 5678999998
Q ss_pred eCCCEEEEEecCCcEEEEecCC
Q 001190 1017 CNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 1017 ~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
.+-.+|+|++.|..|+|||+..
T Consensus 374 etlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 374 ETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhccceeecCCceEEEEEechh
Confidence 8888999999999999999864
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.40 E-value=2.4e-10 Score=120.10 Aligned_cols=372 Identities=13% Similarity=0.117 Sum_probs=229.5
Q ss_pred EEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEE
Q 001190 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1128)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1128)
.+|...+......+....-++..+++||.|.+|++.. ...|.+|+...+..+..+.. ..|.-+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRH---PDVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeec---CCceecccCccccee
Confidence 3455444444444444566889999999999999875 45699999887775555543 257889999999999
Q ss_pred EEEECC---------------CcEEEEECCCCeeeEEEecCCCCCCcc-eEEEcCCCCEEEEEEcCCcEEEEEcccCccc
Q 001190 601 LAVGED---------------SQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1128)
Q Consensus 601 ~~~s~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1128)
++-+.. ..+.+||..+|.++..+.......-.. -+.|+-+.+++|-. ....+.|+++ ++...
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~ 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc
Confidence 986643 349999999999998887654421233 67889888887755 3457889987 33111
Q ss_pred cccccCCcccccc-Ccceeeeeeccccccc-ccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcce
Q 001190 665 LRAVENPPFEALR-TPIESVALKVSASSAV-SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1128)
Q Consensus 665 ~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 742 (1128)
.+.....+ ..|....++|.|..-. +...+. ....+..+++|.
T Consensus 165 -----~~p~~~lr~~gi~dFsisP~~n~~~la~~tPE-------------------------------k~~kpa~~~i~s 208 (561)
T COG5354 165 -----EHPFKNLRPVGILDFSISPEGNHDELAYWTPE-------------------------------KLNKPAMVRILS 208 (561)
T ss_pred -----cCchhhccccceeeEEecCCCCCceEEEEccc-------------------------------cCCCCcEEEEEE
Confidence 12222222 4567778888754321 111111 122335556666
Q ss_pred eEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCcccc
Q 001190 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1128)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1128)
+.. ...+....+.. -.-..+-|.+.|.++++-....+ + .+....+...+.++++....+..
T Consensus 209 Ip~---~s~l~tk~lfk-----~~~~qLkW~~~g~~ll~l~~t~~-k----------snKsyfgesnLyl~~~~e~~i~V 269 (561)
T COG5354 209 IPK---NSVLVTKNLFK-----VSGVQLKWQVLGKYLLVLVMTHT-K----------SNKSYFGESNLYLLRITERSIPV 269 (561)
T ss_pred ccC---CCeeeeeeeEe-----ecccEEEEecCCceEEEEEEEee-e----------cccceeccceEEEEeecccccce
Confidence 542 11122211111 11135667777777654322100 0 00111111223333333111111
Q ss_pred ccccCCCCCCCeeEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC---Cc
Q 001190 823 NDVAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---ST 896 (1128)
Q Consensus 823 ~~~~~~~~~~~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d---g~ 896 (1128)
.. ...++|...+|.|+++.+++.+ ...+.++|+... .. +......=..+.|+| .+++++.++-| |.
T Consensus 270 -~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gn 341 (561)
T COG5354 270 -EK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSP-HERYILFAGFDNLQGN 341 (561)
T ss_pred -ec---cccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccC-cccEEEEecCCccccc
Confidence 00 2578999999999999887765 567999999765 33 333455567788999 78888876644 78
Q ss_pred EEEEecccceeee-cccccccCeeEEEEcCCCCEEEEEc------CCCcEEEEECCCCcccceeEEeecCCCCCCCccEE
Q 001190 897 IHIYNVRVDEVKS-KLKGHQKRITGLAFSTSLNILVSSG------ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 969 (1128)
Q Consensus 897 v~iwd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~~------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v 969 (1128)
+.+||........ .+.+.. ..-+.|+||+.++.+.. .|..|+|||+..... ...+.+
T Consensus 342 i~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~--------------fel~~~ 405 (561)
T COG5354 342 IEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV--------------FELTNI 405 (561)
T ss_pred eEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchh--------------hhhhhc
Confidence 9999988664443 666543 34578999999888764 378899999987442 245667
Q ss_pred EEcCCCCEEEEE
Q 001190 970 QFNADQVRMLVV 981 (1128)
Q Consensus 970 ~~s~d~~~l~~~ 981 (1128)
.|.|.|++..+.
T Consensus 406 ~W~p~~~~~tts 417 (561)
T COG5354 406 TWDPSGQYVTTS 417 (561)
T ss_pred cccCCcccceee
Confidence 888888777664
No 251
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=3.7e-11 Score=122.09 Aligned_cols=273 Identities=11% Similarity=0.136 Sum_probs=191.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEe-eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVG-SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~g-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
....|..++|--|++.=+..+ +.|..+..+.+........ .|+. ......+++|..++.. ...|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~---------~~~~l~~~~I~gl~~~--dg~L 118 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDA---------KTVSLGTKSIKGLKLA--DGTL 118 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccc---------cccccccccccchhhc--CCEE
Confidence 455678888876665333333 3566677776665554321 1221 2244456677777765 3477
Q ss_pred EEEeCCCeEEEEEccCCCccee-ceeecccccceeEEEEecCCCeEEEEEecCC--CeEEEEe-cCCCeEEEecC-----
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEG----- 492 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~-~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d--~~i~vWd-~~g~~~~~~~~----- 492 (1128)
++|-.+|.+.+|..+.+..-.. ...+..+ ..+..+.=++.... ++++|+.. ..+.+|| ...+.+..-+.
T Consensus 119 itc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 119 ITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred EEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 7888999999999985541100 0012223 45666666666664 67779998 8899999 55544433221
Q ss_pred --CCCC--eEEEeccCCCCccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 493 --HEAP--VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 493 --h~~~--v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
-.-+ ++++.|.+..+...|++++.-+.+|+||.+.+.. ...+.....+++++...|+|++++++.. .+.+.
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~ 272 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLA 272 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhh
Confidence 1123 4566776654468999999999999999987654 4467777889999999999999999874 78899
Q ss_pred EEeCCCCceeeE-eccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 568 EWNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 568 ~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
.+|.+.++.... +.+..+ .+..+..+|...+++++|-|+.|+|+|+++.+++.......+ ++++.+.++
T Consensus 273 ~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~~ 342 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRDD 342 (412)
T ss_pred eecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecCC
Confidence 999999998887 666665 899999999999999999999999999999777766554433 566666553
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.38 E-value=6.2e-10 Score=123.33 Aligned_cols=254 Identities=15% Similarity=0.214 Sum_probs=164.0
Q ss_pred CCCeeEEEeccCCCeEEEEeC-----CeEEEEECCC--ce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEE
Q 001190 831 EEAVPCIALSKNDSYVMSATG-----GKISLFNMMT--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIY 900 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~d-----g~i~vwd~~~--~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~-~dg~v~iw 900 (1128)
......++++|++++|.+... +.|..|++.. ++ .+.+..........++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 455677899999999988863 5688888765 33 3344443445567899999 788777775 68999999
Q ss_pred eccc-ceeeec---c--c--------ccccCeeEEEEcCCCCEEEEEcC-CCcEEEEECCCCc--ccceeEEeecCCCCC
Q 001190 901 NVRV-DEVKSK---L--K--------GHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDTWE--KRKSVTIHIPAGKTP 963 (1128)
Q Consensus 901 d~~~-~~~~~~---l--~--------~h~~~V~~l~~s~d~~~l~s~~~-Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~ 963 (1128)
++.. |.+... + . .......++.|+|||+++++... ...|.+|+++... ......+.. ...
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~---~~G 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV---PPG 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC---STT
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc---ccC
Confidence 9986 433322 1 1 12234678999999998887532 3469999998765 222222222 223
Q ss_pred CCccEEEEcCCCCEEEEEe--cCeEEEEecC--Cccc--cccccc---CCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEE
Q 001190 964 TGDTRVQFNADQVRMLVVH--ETQLAIYDAS--KMER--IRQWTP---QDALSAPISCAVYSCNSQLVFATF-CDGNIGV 1033 (1128)
Q Consensus 964 ~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~--~~~~--~~~~~~---~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~v 1033 (1128)
...+.++|+||++++.+.. ++.|.+|++. ++.. +..+.. ..........++++|||++|+++. .++.|.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 6789999999999998865 7889999988 3322 111111 111123688999999999999866 5778999
Q ss_pred EecC--CCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEE-CCCcEEEEcCCCCCCCcc
Q 001190 1034 FDAD--TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEPSESEGKWG 1099 (1128)
Q Consensus 1034 wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~-~dg~i~iWd~~~~~~~w~ 1099 (1128)
|++. +|++...-.. ......+..++++| ++++|+++. .++.|.+|++....+++.
T Consensus 272 f~~d~~~g~l~~~~~~----------~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTV----------PTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEECTTTTTEEEEEEE----------EESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEecCCCceEEEEEE----------eCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 9993 3444332220 01233578999999 577666555 777899998865444443
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=6e-11 Score=118.09 Aligned_cols=179 Identities=16% Similarity=0.198 Sum_probs=121.5
Q ss_pred CCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceE---EEEeeCCC-----CCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 001190 829 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV---MTTFMSPP-----PASTFLAFHPQDNNIIAIGTEDSTIHIY 900 (1128)
Q Consensus 829 ~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~---~~~~~~~~-----~~v~~l~~s~~d~~~lasg~~dg~v~iw 900 (1128)
.|...|.++.++.|+..++++.|=.|-+|+++--.. +-.++.+. .-|++..|+|....+++..+..|+|++-
T Consensus 162 aHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred cceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 488999999999999999999999999999863221 22222232 2489999999888899999999999999
Q ss_pred ecccceee----ec------------ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCC-cccceeEEeecCCCCC
Q 001190 901 NVRVDEVK----SK------------LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW-EKRKSVTIHIPAGKTP 963 (1128)
Q Consensus 901 d~~~~~~~----~~------------l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~ 963 (1128)
|++...+- +. +.+--..|..+.|+++|+|+++-+. -+|++||+... +...+.+++....
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr--- 317 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR--- 317 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH---
Confidence 99843211 11 1112246888999999999998654 57999999542 2222222221000
Q ss_pred CCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEE
Q 001190 964 TGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC 1043 (1128)
Q Consensus 964 ~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~ 1043 (1128)
.+ +..+...++ -..-..++||.++.+++||+..+.++||++..|....
T Consensus 318 ------------------------------~k-Lc~lYEnD~-IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 318 ------------------------------SK-LCSLYENDA-IFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred ------------------------------HH-HHHHhhccc-hhheeEEEEcCCcceEecccccceEEEecCCCCccee
Confidence 00 011111000 1223567899999999999999999999987766544
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.7e-09 Score=110.15 Aligned_cols=252 Identities=10% Similarity=0.213 Sum_probs=174.4
Q ss_pred CCCCeeEEEeccCCCeEEEEe----CCeEEEEECCC--ceEEE--EeeCCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEE
Q 001190 830 LEEAVPCIALSKNDSYVMSAT----GGKISLFNMMT--FKVMT--TFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIY 900 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~----dg~i~vwd~~~--~~~~~--~~~~~~~~v~~l~~s~~d~~~lasg~-~dg~v~iw 900 (1128)
.....+-++|+|++++|.++. +|.|..|.++. |++.. .......+-+.+++++ ++++|+++. .-|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 677789999999999998874 36687777764 55422 2222233348899999 898888876 45789999
Q ss_pred eccc-ceeee--cccccccC----------eeEEEEcCCCCEEEEEc--CCCcEEEEECCCCcccceeEEeecCCCCCCC
Q 001190 901 NVRV-DEVKS--KLKGHQKR----------ITGLAFSTSLNILVSSG--ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 965 (1128)
Q Consensus 901 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~l~s~~--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 965 (1128)
-+.. |.+.. .+..|.+. +....|.|++++|++.+ .| .|.+|+++.|+........... +..
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~---G~G 192 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKP---GAG 192 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCC---CCC
Confidence 9865 43321 12235554 88899999999999874 45 5999999988776655555433 377
Q ss_pred ccEEEEcCCCCEEEEEe--cCeEEEEecCCc-ccccccccC------CCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEe
Q 001190 966 DTRVQFNADQVRMLVVH--ETQLAIYDASKM-ERIRQWTPQ------DALSAPISCAVYSCNSQLVFATF-CDGNIGVFD 1035 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~-~~~~~~~~~------~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd 1035 (1128)
.+.|+|+|++++..+.. +++|.+|..... ..+..++.. -.-.....+|.+++||++|.++. ....|.+|.
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 89999999999988764 899999998873 223322221 11256778999999999999876 345788887
Q ss_pred cCC--CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCC-cEEEEcCCCCCCC
Q 001190 1036 ADT--LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG-SVKVMEPSESEGK 1097 (1128)
Q Consensus 1036 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg-~i~iWd~~~~~~~ 1097 (1128)
+.. |.+...... ..+..++..+.|+|. +++|++++.++ +|.+|......++
T Consensus 273 V~~~~g~L~~~~~~----------~teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 273 VDPDGGKLELVGIT----------PTEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred EcCCCCEEEEEEEe----------ccCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCce
Confidence 764 333222221 134456788999994 77776666554 6889987765543
No 255
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=6.3e-11 Score=120.42 Aligned_cols=172 Identities=17% Similarity=0.255 Sum_probs=133.3
Q ss_pred EEEeecc--ceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC--CCeEEEEe-CCe
Q 001190 779 LLALGSN--GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--DSYVMSAT-GGK 853 (1128)
Q Consensus 779 l~~~~~d--g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~-dg~ 853 (1128)
+++||.. ..+.+||+.... ++|...+-. ...-+..-+-.++++.|-+. ...+|++. -+.
T Consensus 164 va~GGke~~n~lkiwdle~~~-------------qiw~aKNvp---nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hq 227 (412)
T KOG3881|consen 164 VATGGKENINELKIWDLEQSK-------------QIWSAKNVP---NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQ 227 (412)
T ss_pred EecCchhcccceeeeecccce-------------eeeeccCCC---CccccceeeeeeccceecCCCCCceEEEEeccee
Confidence 4446666 789999987643 344433211 11111113455778888887 78889988 799
Q ss_pred EEEEECCCc-eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec-ccccccCeeEEEEcCCCCEEE
Q 001190 854 ISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILV 931 (1128)
Q Consensus 854 i~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~ 931 (1128)
+++||...+ +++..+.--..+++++...| +++++.+|..-|.+..||++.++.... +.+-++.|+++..+|.+++|+
T Consensus 228 vR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~la 306 (412)
T KOG3881|consen 228 VRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLA 306 (412)
T ss_pred EEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEE
Confidence 999999866 45777777788999999999 999999999999999999999998877 899999999999999999999
Q ss_pred EEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC
Q 001190 932 SSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1128)
Q Consensus 932 s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 974 (1128)
++|-|+.|||+|+++.+.+....+. ...+.+.+.++
T Consensus 307 s~GLDRyvRIhD~ktrkll~kvYvK-------s~lt~il~~~~ 342 (412)
T KOG3881|consen 307 SCGLDRYVRIHDIKTRKLLHKVYVK-------SRLTFILLRDD 342 (412)
T ss_pred eeccceeEEEeecccchhhhhhhhh-------ccccEEEecCC
Confidence 9999999999999996655444443 45566666554
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.2e-09 Score=111.14 Aligned_cols=282 Identities=12% Similarity=0.133 Sum_probs=184.7
Q ss_pred CCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeecc---ceeEeeeccccCCCCCCceeeeeccc
Q 001190 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN---GVQKLWKWHRNEQNPSGKATASAVPQ 811 (1128)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~ 811 (1128)
.+.|.+|++.... +....... ....+..+-++++|+++.|.++..+ |.+.-|.++
T Consensus 15 s~gI~v~~ld~~~--g~l~~~~~---v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD----------------- 72 (346)
T COG2706 15 SQGIYVFNLDTKT--GELSLLQL---VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID----------------- 72 (346)
T ss_pred CCceEEEEEeCcc--cccchhhh---ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc-----------------
Confidence 3678888887322 12211112 2266788899999999999888764 666666553
Q ss_pred eeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEEEECCC-ceEEE--EeeCCCCC----------ee
Q 001190 812 HWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVMT--TFMSPPPA----------ST 876 (1128)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~--~~~~~~~~----------v~ 876 (1128)
..+|.+....... ....+...++++++|++|+++. .|.|.++-+.. |.+.. .+..|.+. +.
T Consensus 73 ---~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H 148 (346)
T COG2706 73 ---PDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH 148 (346)
T ss_pred ---CCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc
Confidence 3333322111100 0234448899999999999997 68899999865 43322 22234444 88
Q ss_pred EEEEcCCCCCEEEEEe-CCCcEEEEecccceeeeccc---ccccCeeEEEEcCCCCEEEEEc-CCCcEEEEECCCC--cc
Q 001190 877 FLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEVKSKLK---GHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDTW--EK 949 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~l~s~~-~Dg~i~iwd~~~~--~~ 949 (1128)
...+.| ++++|++.. .--.|.+|++..|++...-. .....-..|.|+|++++..... -+++|.+|.++.. +.
T Consensus 149 ~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~ 227 (346)
T COG2706 149 SANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF 227 (346)
T ss_pred eeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE
Confidence 899999 898888765 33469999999886543221 2234567899999999877655 5899999999883 32
Q ss_pred cceeEEeecCCC--CCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCc-ccccccccCCCCCCCeEEEEEeeCCCEEEE
Q 001190 950 RKSVTIHIPAGK--TPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVFA 1024 (1128)
Q Consensus 950 ~~~~~~~~~~~~--~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t 1024 (1128)
.....+...... .......|..++||++|.++. ...|.+|.+... ..+........+...-....|+++|++|++
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 222222222221 126778899999999999985 458889988754 323333333333555789999999999999
Q ss_pred EecCC-cEEEEecC--CCceEE
Q 001190 1025 TFCDG-NIGVFDAD--TLRLRC 1043 (1128)
Q Consensus 1025 ~~~dg-~i~vwd~~--~~~~~~ 1043 (1128)
+..++ .|.||..+ +|++-.
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EccCCCcEEEEEEcCCCceEEe
Confidence 88544 58888665 555433
No 257
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.35 E-value=5.2e-11 Score=118.63 Aligned_cols=155 Identities=12% Similarity=0.197 Sum_probs=108.9
Q ss_pred eEEEEcCCCCCEEEEEeC----------CCcEEEEeccc-ceeeecccc-cccCeeEEEEcCCCCEEEEE--cCCCcEEE
Q 001190 876 TFLAFHPQDNNIIAIGTE----------DSTIHIYNVRV-DEVKSKLKG-HQKRITGLAFSTSLNILVSS--GADAQLCV 941 (1128)
Q Consensus 876 ~~l~~s~~d~~~lasg~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~--~~Dg~i~i 941 (1128)
..+.|++ .|.+|+.-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4567788 6655554332 13355555532 223333332 34579999999999987654 45789999
Q ss_pred EECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe----cCeEEEEecCCcccccccccCCCCCCCeEEEEEee
Q 001190 942 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 1017 (1128)
Q Consensus 942 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~ 1017 (1128)
||++ ++.+.. +. ...+..+.|+|+|+++++++ .|.+.+||+.+.+.+.... ...++.++|||
T Consensus 88 yd~~-~~~i~~--~~------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-----~~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVK-GKKIFS--FG------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-----HSDATDVEWSP 153 (194)
T ss_pred EcCc-ccEeEe--ec------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-----cCcEEEEEEcC
Confidence 9997 332221 11 14567899999999999864 4679999999888877654 34578999999
Q ss_pred CCCEEEEEec------CCcEEEEecCCCceEEEeC
Q 001190 1018 NSQLVFATFC------DGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1018 dg~~l~t~~~------dg~i~vwd~~~~~~~~~~~ 1046 (1128)
||++|+++.. |+.++||+. .|+++....
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEe-cCeEeEecc
Confidence 9999998764 789999998 477766655
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=5e-10 Score=129.20 Aligned_cols=224 Identities=13% Similarity=0.104 Sum_probs=143.0
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCC---CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--e
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~ 476 (1128)
+..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999887643 369999999886433 3333445667899999995 334555555 6
Q ss_pred EEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe-ccC--cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeE
Q 001190 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 477 i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
|.+||..+.....+..+........|++ ||+.|+..+ .+| .|.++++.+++... +...........|+|||+.+
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8888944444556666665566677866 566665544 344 46666766554332 22223334567899999999
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC---CcEEEEECCCCeeeEEEecCCCCC
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..|++++..... ...+... ..
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~-~~~l~~~--~g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV-RLPLPTA--QG 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEECcCC--CC
Confidence 887642 23456889999888654332221 12245899999999887643 357777875443 3333322 22
Q ss_pred CcceEEEcCC
Q 001190 631 NLPRLRFSKE 640 (1128)
Q Consensus 631 ~v~~v~~sp~ 640 (1128)
.+...+|+|-
T Consensus 419 ~~~~p~ws~~ 428 (430)
T PRK00178 419 EVREPSWSPY 428 (430)
T ss_pred CcCCCccCCC
Confidence 4566777763
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.34 E-value=4.5e-09 Score=112.41 Aligned_cols=203 Identities=13% Similarity=0.171 Sum_probs=126.7
Q ss_pred eEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc-ceee--
Q 001190 835 PCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVK-- 908 (1128)
Q Consensus 835 ~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~-- 908 (1128)
..++++|||++|.+.. ++.|.+.|+.+++.+.++.-.. ...-...+. ..++ +-+.||......+.+ |+..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e--~~~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN--DTFF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC--CccE-EEeecCceEEEEecCCCceEEe
Confidence 3567788888877664 5678888888888888776422 111122221 1222 222344443333321 2111
Q ss_pred --ecccccccCee-EEEEcC-CCCEEEEEcCCCcEEEEECCCCcccceeEEeecC------CCCCCCccEEEEcCCCCEE
Q 001190 909 --SKLKGHQKRIT-GLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 909 --~~l~~h~~~V~-~l~~s~-d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~l 978 (1128)
..+.+-..++. .-.|++ ||+++..... |.|.+-|+............... +-.+....-++++++++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 01111001110 014455 8887776665 99999997654433322222211 1122344459999999998
Q ss_pred EEEe-----------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCC-EEEEEe-cCCcEEEEecCCCceEEEe
Q 001190 979 LVVH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 979 ~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~~ 1045 (1128)
++.. .+.|.++|..+++.+..+.. ...+..++|||||+ +|++.. .++.|.|.|+.+++.+..+
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 8832 25799999999999998887 67899999999999 888766 5788999999999999998
Q ss_pred C
Q 001190 1046 A 1046 (1128)
Q Consensus 1046 ~ 1046 (1128)
.
T Consensus 339 ~ 339 (352)
T TIGR02658 339 N 339 (352)
T ss_pred c
Confidence 4
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=3.2e-10 Score=128.56 Aligned_cols=241 Identities=12% Similarity=0.058 Sum_probs=147.6
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcE--EEEeeccC--eEEEEEccCCceecccccccccccccCccccceec
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL--LLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l--la~gs~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1128)
+|-++...............+..-+|||||+.+ +++...+| .|.+.++.+|+... +
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------l 226 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------I 226 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------e
Confidence 554443333333333355667788999999863 33544444 57777887776432 2
Q ss_pred cCCCcceEEEEEccCCCEEEEEeC-----CCeEEEEEccCCC--cceeceeecccccceeEEEEecCCCeEEEEEecCCC
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAFT-----KHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~~-----d~~i~vwd~~~~~--~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
....+.....+|||||+.||..+. +..+.+|++.++. ..+. ...++.+.....+|+|||+. ++++...++
T Consensus 227 t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g 303 (428)
T PRK01029 227 LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR-LVFVSNKDG 303 (428)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE-EEEEECCCC
Confidence 233445567899999999987653 2234557776532 1221 12233344567899999995 233444566
Q ss_pred eEEEEe--c--CCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc---CcEEEEecCCCCceeeecCCCCeEEEEEEcC
Q 001190 476 LIKVWE--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA 548 (1128)
Q Consensus 476 ~i~vWd--~--~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~ 548 (1128)
...+|. . .+.....+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++.... ......+....|+|
T Consensus 304 ~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSp 380 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAI 380 (428)
T ss_pred CceEEEEECcccccceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECC
Confidence 555654 3 2344555655555667778876 66777765543 3688999887665433 33334567899999
Q ss_pred CCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCC
Q 001190 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (1128)
Q Consensus 549 ~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 596 (1128)
||+.|+.... ..+...|+++|+.+++......+. +.+...+|+|-
T Consensus 381 DG~~L~f~~~-~~g~~~L~~vdl~~g~~~~Lt~~~--g~~~~p~Ws~~ 425 (428)
T PRK01029 381 DSLHLVYSAG-NSNESELYLISLITKKTRKIVIGS--GEKRFPSWGAF 425 (428)
T ss_pred CCCEEEEEEC-CCCCceEEEEECCCCCEEEeecCC--CcccCceecCC
Confidence 9999887653 234678999999887765544322 13455677764
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=4.9e-10 Score=128.27 Aligned_cols=223 Identities=13% Similarity=0.082 Sum_probs=141.1
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCC---CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCe--
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~-- 476 (1128)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44567789999999999999987543 258889998876432 2222334457899999996 3345566664
Q ss_pred EEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe-ccCc--EEEEecCCCCceeeecCCCCeEEEEEEcCCCCeE
Q 001190 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 477 i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
|.+||..+.....+..+.......+|++ ||+.|+..+ .++. |.++|+.+++.. .+..........+|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEE
Confidence 7777844445566666655667778876 566665544 3454 444565554432 232233334567899999999
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC-C--cEEEEECCCCeeeEEEecCCCCC
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-S--QIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
+..... .+...|.++|+.+++........ ......|+|+|+.|+..+.+ | .+++++. ++.....+.... .
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--G 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--C
Confidence 887642 23446777898887654322221 12235799999998876643 3 3777787 455555554332 2
Q ss_pred CcceEEEcC
Q 001190 631 NLPRLRFSK 639 (1128)
Q Consensus 631 ~v~~v~~sp 639 (1128)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 466778877
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2e-10 Score=131.53 Aligned_cols=225 Identities=15% Similarity=0.123 Sum_probs=137.3
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccC--eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
.....+...+.+..|||||++++.+...++ .|.+||+.+++... +....+.....+||
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wS 270 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFS 270 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeEC
Confidence 344557778999999999996655543333 58888988876432 11122234568999
Q ss_pred cCCCEEEEE-eCCCe--EEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--eEEEEe-cCCCeEEE
Q 001190 416 PDGNYVGVA-FTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LSGRKLFN 489 (1128)
Q Consensus 416 pdg~~las~-~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~i~vWd-~~g~~~~~ 489 (1128)
|||+.|+.. +.+|. |.+||+++++..+ +..+.......+|+|||+. ++++...++ .|.++| .+|+ ...
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~----lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~-~~~ 344 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIATKALTR----ITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGK-VSR 344 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCCCCeEE----CccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCC-EEE
Confidence 999988764 55664 7777888775432 4455566788999999995 334444444 466667 4454 333
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEec-cCcEEE--EecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceE
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKA--WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~--wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i 566 (1128)
+..........+|++ ||++|+..+. ++...+ +|++++.... +... .......|+|||+.|+.... .++...+
T Consensus 345 Lt~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~-~~g~~~l 419 (448)
T PRK04792 345 LTFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTT-YQGKQVL 419 (448)
T ss_pred EecCCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEe-cCCceEE
Confidence 332222234456765 5667766554 444444 5665554332 2221 22234579999999987764 2344568
Q ss_pred EEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 567 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
++++. +|+....+..+.+ .+...+|+|
T Consensus 420 ~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 420 AAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 88887 5555566655433 455566765
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.32 E-value=3.5e-09 Score=113.28 Aligned_cols=240 Identities=9% Similarity=0.045 Sum_probs=154.3
Q ss_pred eccCCCeEEEEeC-----------CeEEEEECCCceEEEEeeCCCC-------CeeEEEEcCCCCCEEEEEe-C-CCcEE
Q 001190 839 LSKNDSYVMSATG-----------GKISLFNMMTFKVMTTFMSPPP-------ASTFLAFHPQDNNIIAIGT-E-DSTIH 898 (1128)
Q Consensus 839 ~s~dg~~la~~~d-----------g~i~vwd~~~~~~~~~~~~~~~-------~v~~l~~s~~d~~~lasg~-~-dg~v~ 898 (1128)
+||||+.+.++.. +.|.+||..+++.+.++..... ....++++| ||++|.+.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 9999998877643 6799999999999988874322 234889999 888887665 4 78999
Q ss_pred EEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC-CCCE
Q 001190 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-DQVR 977 (1128)
Q Consensus 899 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~ 977 (1128)
+.|+.+++.+.++.-- +...-...+++ ..++ -+.||......+.+..................-...-.|++ ||++
T Consensus 132 VvD~~~~kvv~ei~vp-~~~~vy~t~e~-~~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~ 208 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVP-DCYHIFPTAND-TFFM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL 208 (352)
T ss_pred EEECCCCcEEEEEeCC-CCcEEEEecCC-ccEE-EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence 9999999998877642 22222222222 2222 23455555444433222222222221110000001114556 9999
Q ss_pred EEEEecCeEEEEecCCcc-----cccccccC----CCCCCCeEEEEEeeCCCEEEEEe----------cCCcEEEEecCC
Q 001190 978 MLVVHETQLAIYDASKME-----RIRQWTPQ----DALSAPISCAVYSCNSQLVFATF----------CDGNIGVFDADT 1038 (1128)
Q Consensus 978 l~~~~d~~i~v~d~~~~~-----~~~~~~~~----~~h~~~v~~l~~s~dg~~l~t~~----------~dg~i~vwd~~~ 1038 (1128)
+.++.+|.|.+.|+.... .+..+... .-....+.-+++++||+.+++.. ..+.|.++|..+
T Consensus 209 ~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 209 VWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 999888999999965432 22222111 01134455699999999888853 225799999999
Q ss_pred CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC-EEEEEE-CCCcEEEEcCCCCCC
Q 001190 1039 LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN-QFAIGL-TDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~s~~-~dg~i~iWd~~~~~~ 1096 (1128)
++.+..+.. ++ .+..++++| |++ +|.+.. .++.|.+.|..+++.
T Consensus 289 ~kvi~~i~v-----------G~--~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 289 GKRLRKIEL-----------GH--EIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CeEEEEEeC-----------CC--ceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 999999882 22 457899999 566 666555 789999999988753
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=9.7e-10 Score=124.68 Aligned_cols=226 Identities=12% Similarity=0.070 Sum_probs=141.8
Q ss_pred ccCCCcceEEEEEccCCCEEE---EEeCCC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC---
Q 001190 402 FKDVPISVSRVAWSPDGNYVG---VAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--- 473 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~la---s~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~--- 473 (1128)
+......+.+-+|||||+.++ +...+| .|.+.++.+|+..+ +....+.....+|+|||+. ++++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCC
Confidence 444555677889999998633 333343 57888888876543 3334445567899999995 2333332
Q ss_pred -CCeEEEEe-cC---CCeEEEecCCCCCeEEEeccCCCCccEEEEEe-ccCcEEEEecCC---CCceeeecCCCCeEEEE
Q 001190 474 -DKLIKVWE-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDT---MGSRVDYDAPGHWCTTM 544 (1128)
Q Consensus 474 -d~~i~vWd-~~---g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~---~~~~~~~~~~~~~i~~~ 544 (1128)
|..+..|+ .. +.......++.+.....+|+| ||+.|+..+ .+|...+|.+.. +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 33455577 43 233333333333445667866 667666554 567666665432 22233444444567788
Q ss_pred EEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC---CCcEEEEECCCCeeeE
Q 001190 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILT 621 (1128)
Q Consensus 545 ~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~ 621 (1128)
.|||||+.|+..... ++...|.+||+.+++....... . ..+....|+|||+.|+..+. ...|+++|+.+++...
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 999999999887642 2456899999998876544333 2 24566889999998886543 4578999998887655
Q ss_pred EEecCCCCCCcceEEEcCC
Q 001190 622 STDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~ 640 (1128)
.....+ .+...+|+|-
T Consensus 410 Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 410 IVIGSG---EKRFPSWGAF 425 (428)
T ss_pred eecCCC---cccCceecCC
Confidence 443222 3567788874
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=3.3e-10 Score=130.68 Aligned_cols=236 Identities=12% Similarity=0.059 Sum_probs=144.3
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeecc--CeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|-.+...........+...+...+|||||++++.+...+ ..|.+||+.+|+... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 4433333334445556888899999999999665554333 368899998876532 222
Q ss_pred CCcceEEEEEccCCCEEEE-EeCCC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--eEEE
Q 001190 405 VPISVSRVAWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKV 479 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las-~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~i~v 479 (1128)
..+.+...+|||||+.|+. ...+| .|.+||+.+++..+ +..+........|+|||+. ++++...++ .|.+
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----VTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE----cccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 3344567899999999885 44444 58888998876432 4456666778899999995 333443344 5777
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc-C--cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-G--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+| .+|+. ..+...........|++ +|+.|+..+.+ + .|.+||+.++.... +.. ........|+|||+.++.
T Consensus 316 ~d~~~g~~-~~lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGRA-ERVTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCCE-EEeecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEE
Confidence 77 45553 33322222233456765 56677666543 3 47778887765433 222 222335689999999988
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1128)
.... .+...+.+++... ...+.+..+.+ .+...+|+|
T Consensus 391 ~~~~-~g~~~l~~~~~~g-~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATRQ-QGRGVLMLVSING-RVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEec-CCceEEEEEECCC-CceEECcCCCC-CcCCCccCC
Confidence 7642 2355678888753 33344443322 445555654
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.9e-09 Score=112.93 Aligned_cols=327 Identities=12% Similarity=0.189 Sum_probs=194.0
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC-----------CCc
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-----------DSQ 608 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-----------dg~ 608 (1128)
.-+-+.|||.|.+|++.. ..-|.+|--.+-..++.|. |. .+..+.|||..+||++-+. ...
T Consensus 212 Tetyv~wSP~GTYL~t~H-----k~GI~lWGG~~f~r~~RF~-Hp--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFH-----KQGIALWGGESFDRIQRFY-HP--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEe-----ccceeeecCccHHHHHhcc-CC--CceeeecCCccceEEEecCCccccCcccCCCce
Confidence 456789999999999986 5558999877666666665 22 5888999999999999652 257
Q ss_pred EEEEECCCCeeeEEEecCCCCCC-cceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeec
Q 001190 609 IKFWDMDNVNILTSTDAEGGLPN-LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1128)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 687 (1128)
++|||+.+|.....+........ -.-..||.|++++|.-.. ..|.|++...- ..+....
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~lld~Ks--------------- 343 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----MLLDKKS--------------- 343 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----eeecccc---------------
Confidence 99999999999888765322222 244679999999987765 46777765431 1111100
Q ss_pred ccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccE
Q 001190 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (1128)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i 767 (1128)
-....|
T Consensus 344 --------------------------------------------------------------------------lki~gI 349 (698)
T KOG2314|consen 344 --------------------------------------------------------------------------LKISGI 349 (698)
T ss_pred --------------------------------------------------------------------------cCCccc
Confidence 022345
Q ss_pred EEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEE
Q 001190 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (1128)
Q Consensus 768 ~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 847 (1128)
..+.|+|.+..|+- |. ..+.. .+..
T Consensus 350 r~FswsP~~~llAY---------wt----------------------pe~~~----------~par-------------- 374 (698)
T KOG2314|consen 350 RDFSWSPTSNLLAY---------WT----------------------PETNN----------IPAR-------------- 374 (698)
T ss_pred cCcccCCCcceEEE---------Ec----------------------ccccC----------Ccce--------------
Confidence 55666666554432 21 00000 1111
Q ss_pred EEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEE----------EeCCCcEEEEecccceeeecccccccC
Q 001190 848 SATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI----------GTEDSTIHIYNVRVDEVKSKLKGHQKR 917 (1128)
Q Consensus 848 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~las----------g~~dg~v~iwd~~~~~~~~~l~~h~~~ 917 (1128)
+.+..+.+++.+++-.-+.-.-..+.|-. +|.+|+. ++.=..+.|+.+.....--..-.-...
T Consensus 375 ------vtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 375 ------VTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred ------EEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 22222222222222222211112223333 3333332 222234667777655432222234578
Q ss_pred eeEEEEcCCCCEEEEEcCC---CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE----ecCeEEEEe
Q 001190 918 ITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV----HETQLAIYD 990 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~----~d~~i~v~d 990 (1128)
|...+|-|.|..+++.+.. .++.+|.+++......+ +...+. ...+.+.|+|.|++++++ ..|.+..||
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l-Vk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL-VKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh-hhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 9999999999987765433 57899988842211111 111111 456789999999999885 378899999
Q ss_pred cCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEec------CCcEEEEecC
Q 001190 991 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC------DGNIGVFDAD 1037 (1128)
Q Consensus 991 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~------dg~i~vwd~~ 1037 (1128)
.........-... -...+.+.|.|.|+|+++++. |.-.+||+..
T Consensus 524 ~~~a~~k~~~~~e---h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 524 TDYADLKDTASPE---HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred cchhhhhhccCcc---ccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 9853333322221 345678999999999999874 3345555553
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=2.5e-10 Score=131.92 Aligned_cols=223 Identities=17% Similarity=0.141 Sum_probs=142.3
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeecc--CeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|..+.........+.+...+.+.+|||||++++.+...+ ..|.+||+.+++... +..
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~ 231 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VAS 231 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eec
Confidence 4443333333444556777899999999999654443222 479999998876432 333
Q ss_pred CCcceEEEEEccCCCEEEEE-eCCC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEE-ecCCC--eEE
Q 001190 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDK--LIK 478 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s-~s~d~--~i~ 478 (1128)
+.+.+.+++|+|||+.|+.. +.++ .|.+||+.++.... +..+........|+|||+. |+. ...++ .|.
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy 305 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----LTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIY 305 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE----CCCCCCCCCCEEECCCCCE--EEEEECCCCCceEE
Confidence 55567789999999988754 4343 58888988875332 4445555667899999994 443 33333 577
Q ss_pred EEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccC---cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 479 vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+||..+.....+..+...+....|++ +|++++.++.++ .|.+||+.++.... +.. ........|+|||+.|+.
T Consensus 306 ~~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 306 MMDADGGEVRRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMILY 381 (417)
T ss_pred EEECCCCCEEEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEEE
Confidence 77844444455555556667778866 667888877765 78888887643322 222 223455689999999988
Q ss_pred eeeccCCCceEEEEeCCCCceeeEec
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYA 581 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1128)
.... ++...+++.+.. ++....+.
T Consensus 382 ~~~~-~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 382 ATTR-GGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEeC-CCcEEEEEEECC-CceeeECC
Confidence 7753 233456666643 44444443
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=5.2e-10 Score=129.20 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=139.1
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCC---CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--e
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~ 476 (1128)
+..+...+.+.+|||||++||.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 45567789999999999999988654 479999999876432 3345666778999999985 344555554 5
Q ss_pred EEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec-cC--cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeE
Q 001190 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 477 i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
|.+||..+.....+..+........|++ +|+.|+..+. ++ .|.++++...+. ..+..+...+..+.|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEE
Confidence 8888844444555655555555667765 6677766554 33 466677665443 3444455567788999999999
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC---cEEEEECCCCeeeEEEe
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~ 624 (1128)
+...... +...|.+||+.++.... +.... ......|+|++++|+..+.++ .+++.+.. +.....+.
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGERV-LTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 9876421 23479999998865433 22221 234468999999998877543 45565643 33344443
No 269
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.30 E-value=2.7e-10 Score=113.56 Aligned_cols=162 Identities=19% Similarity=0.349 Sum_probs=115.0
Q ss_pred EEEEEccCCCEEEEEeC----------CCeEEEEEccCCC-cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 410 SRVAWSPDGNYVGVAFT----------KHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 410 ~~l~~spdg~~las~~~----------d~~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
..+.|+|+|++|+.-.. -+...+|-++..+ ....+ .+ ...++|.+++|+|+|+.+.+++|..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-EL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-ec-cCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 45789999998886533 1346666664322 22211 12 234579999999999975566677788999
Q ss_pred EEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc---CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 479 vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+||.+++.+..+. ...++.+.|+| +|++|++++.+ |.|.+||.+..+..... +...+..++|+|||+++++
T Consensus 87 lyd~~~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 87 LYDVKGKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EEcCcccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeecc--ccCcEEEEEEcCCCCEEEE
Confidence 9997788888774 46778899977 67899988754 67999999865554443 3335789999999999998
Q ss_pred eeec--cCCCceEEEEeCCCCceeeEe
Q 001190 556 CGTS--KDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 556 ~~~~--~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
+... ...|+.++||+.. |+.+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 8752 1246778999974 5554443
No 270
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.30 E-value=1.3e-10 Score=115.92 Aligned_cols=349 Identities=16% Similarity=0.194 Sum_probs=205.7
Q ss_pred eecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCC--CCeEEEeccCCCCccEEEEEeccCcEE
Q 001190 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHE--APVYSICPHHKENIQFIFSTAIDGKIK 521 (1128)
Q Consensus 446 ~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (1128)
.++||.+.|++...-|-.. -+++.+.|.+++||- ..|+--..+. |. .+++++.+.. +...|+.|-..|++.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~--e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVS--ESRRLYVGQDNGTVT 93 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeec--cceEEEEEEecceEE
Confidence 4779999999988888777 599999999999998 3343322222 33 4566666644 667899999999998
Q ss_pred EEecC----CCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCC
Q 001190 522 AWLYD----TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (1128)
Q Consensus 522 ~wd~~----~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1128)
-+.+. ..........|...+..+.|+....++++.+. |..+.---.+.+..+..+.-... .....+.-
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~d~-- 165 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFETP--ASALQFDA-- 165 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeecc--CCCCceee--
Confidence 88553 33334455667789999999999999999874 44443222333333322211110 01111111
Q ss_pred CEEEEEECCCcEEEEECCCC--eeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCcccc
Q 001190 598 NHFLAVGEDSQIKFWDMDNV--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEA 675 (1128)
Q Consensus 598 ~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 675 (1128)
.+.+.|...|.|.+-.+... .++..+. ++...+.+++|.|...+|.+|..|..+.+||+.........+.
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~--~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~------ 237 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFN--GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ------ 237 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEc--CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec------
Confidence 14555656677766655443 3444444 5566899999999999999999999999999865422222111
Q ss_pred ccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEE
Q 001190 676 LRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLV 755 (1128)
Q Consensus 676 ~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~ 755 (1128)
T Consensus 238 -------------------------------------------------------------------------------- 237 (404)
T KOG1409|consen 238 -------------------------------------------------------------------------------- 237 (404)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCcee-----eeeccceeccC------CCcccccc
Q 001190 756 TMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT-----ASAVPQHWLPS------SGLLMAND 824 (1128)
Q Consensus 756 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~-----~~~~~~~~~~~------~~~~~~~~ 824 (1128)
+|...|..+...+--+.+++++.||.|.+|++........+-.. .-.++-.|+.. .--+....
T Consensus 238 ------gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~ 311 (404)
T KOG1409|consen 238 ------GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHH 311 (404)
T ss_pred ------cchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhh
Confidence 25566666666666677888888888888887653221111000 00011122221 11111100
Q ss_pred ccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECC-------CceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 001190 825 VAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMM-------TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 897 (1128)
Q Consensus 825 ~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~-------~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v 897 (1128)
.. .-...+...+-+.-..+...+.+-.+++.|.- +...+..+..-...|+++.+.. .-.+|++++.|..|
T Consensus 312 cr--kcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi 388 (404)
T KOG1409|consen 312 CR--KCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVI 388 (404)
T ss_pred hh--hhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEE
Confidence 00 01222322332222233333333334444421 1122333433344689999988 77789999999999
Q ss_pred EEEeccc
Q 001190 898 HIYNVRV 904 (1128)
Q Consensus 898 ~iwd~~~ 904 (1128)
+|||+..
T Consensus 389 ~iwd~~~ 395 (404)
T KOG1409|consen 389 KIWDVRS 395 (404)
T ss_pred EEEechh
Confidence 9999864
No 271
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=2e-10 Score=114.42 Aligned_cols=264 Identities=11% Similarity=0.194 Sum_probs=175.0
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceeccccccc-ccccccCccccceeccCCCcceEEEEEccCCC-
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI-WDMAACSLPFQASIFKDVPISVSRVAWSPDGN- 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~- 419 (1128)
...+-|.+|.|..+|. +||||..+|.|.++.-..... ..+.+.. +.-..+...+.. --.-...|..+.|.+++.
T Consensus 23 teadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~ey~~~t~fqshepEFDYLk--SleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-GEYNFQTEFQSHEPEFDYLK--SLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred chhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-cceeeeeeeeccCcccchhh--hhhhhhhhhhceecCCCCc
Confidence 3456799999999999 789999999999997443221 0111110 000011111111 011245788999998654
Q ss_pred -EEEEEeCCCeEEEEEccCCCcce--------------------------------ecee-ecccccceeEEEEecCCCe
Q 001190 420 -YVGVAFTKHLIQLYSYAGSNDLR--------------------------------QHSQ-IDAHVGAVNDLAFAYPNKL 465 (1128)
Q Consensus 420 -~las~~~d~~i~vwd~~~~~~~~--------------------------------~~~~-~~~h~~~v~~l~fs~d~~~ 465 (1128)
.++..+.|++|++|.+.....-. ..+. -.+|+--|+++.+..|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56677899999999886422100 0011 236778899999999998
Q ss_pred EEEEEecCCCeEEEEe--cCCCe--EEEecCC-----CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce-----
Q 001190 466 LCVVTCGDDKLIKVWE--LSGRK--LFNFEGH-----EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR----- 531 (1128)
Q Consensus 466 ~~l~s~s~d~~i~vWd--~~g~~--~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~----- 531 (1128)
.++|+. |=.|.+|+ ...+. +..++.+ ..-|++..|+|... ..++-.+..|+|++.|++.....
T Consensus 178 -t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 566654 88999999 44433 2333333 23578888998754 57777788899999999742211
Q ss_pred -eeecC----------CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC-CCCceeeEeccccC-----------Cc-
Q 001190 532 -VDYDA----------PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE-SEGTIKRTYAGFRK-----------KS- 587 (1128)
Q Consensus 532 -~~~~~----------~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~-~~~~~~~~~~~~~~-----------~~- 587 (1128)
..... --..|..+.|+++|+++++-. --+|.+||+ ...+++.+++.|.. ..
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 11111 112678899999999999853 478999999 46677777776532 11
Q ss_pred --eeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 588 --NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 588 --v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
-..++|+.++.++++|+....+++++...|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2347899999999999999999999965543
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.2e-09 Score=117.79 Aligned_cols=190 Identities=17% Similarity=0.283 Sum_probs=149.4
Q ss_pred cEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE------cc--------------C
Q 001190 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW------SP--------------D 417 (1128)
Q Consensus 358 ~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~------sp--------------d 417 (1128)
.++|..+.||.++||+..+++......- ...-++.-++.+| +| |
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAP----------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeecc----------------chhccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 3778889999999999998876543110 0011223333333 22 3
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~ 496 (1128)
-..|+-|...|.|.+|++..|+.-..+ .-.+|.+.|.++.++.+-. .|.|++.|+.+..|+ .+++.++.+.+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 457778889999999999998855432 3458999999999999888 899999999999999 888888999998889
Q ss_pred eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC-----CCeEEEeeeccCCCceEEEEeC
Q 001190 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
+.++++++ ||..+++++ +.|++||+++.+....+++|.++|+++.|..+ |.++++... .+..+.+|-+
T Consensus 147 ~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVV 219 (541)
T ss_pred cceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEE
Confidence 99999876 678998887 78999999999999999999999999999877 788887654 3555677765
Q ss_pred CC
Q 001190 572 SE 573 (1128)
Q Consensus 572 ~~ 573 (1128)
..
T Consensus 220 ~~ 221 (541)
T KOG4547|consen 220 EK 221 (541)
T ss_pred Ec
Confidence 43
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=8.9e-09 Score=109.38 Aligned_cols=260 Identities=13% Similarity=0.172 Sum_probs=167.9
Q ss_pred ceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEE
Q 001190 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (1128)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~las 890 (1128)
.+||+.+|.+......-......-.-+.||.|++++|--..+.|.||+..+..++..-.-....|....|+| .+.+||.
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAY 363 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAY 363 (698)
T ss_pred EEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEE
Confidence 345566666544322210122223346899999999988888999999988666544333566799999999 8889987
Q ss_pred EeCC-----CcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcC-------CC---cEEEEECCCCcccceeEE
Q 001190 891 GTED-----STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA-------DA---QLCVWSIDTWEKRKSVTI 955 (1128)
Q Consensus 891 g~~d-----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~-------Dg---~i~iwd~~~~~~~~~~~~ 955 (1128)
-... ..+.+-.+.+++.+++-..|.-.=..+-|-.+|.+|+.--. -| .+-|+.+..... ....+
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~v 442 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVV 442 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceee
Confidence 6533 35778888888888776666544456778788888875321 11 234555443221 11111
Q ss_pred eecCCCCCCCccEEEEcCCCCEEEEEe----cCeEEEEecC-CcccccccccCCCCCCCeEEEEEeeCCCEEEEEe---c
Q 001190 956 HIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAIYDAS-KMERIRQWTPQDALSAPISCAVYSCNSQLVFATF---C 1027 (1128)
Q Consensus 956 ~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~~i~v~d~~-~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~---~ 1027 (1128)
.. ...+...+|-|.|..+++-+ ..++.+|.++ +..........+ ....+.+.|||.|++++++. .
T Consensus 443 el-----ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~ 515 (698)
T KOG2314|consen 443 EL-----KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSR 515 (698)
T ss_pred ec-----chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEeccc
Confidence 11 15678899999999888743 4678999888 333333222222 45668999999999988754 5
Q ss_pred CCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCc------EEEEcCC
Q 001190 1028 DGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGS------VKVMEPS 1092 (1128)
Q Consensus 1028 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~------i~iWd~~ 1092 (1128)
.|.+..+|+.-......-.+ .| -..+.+.|.| .|++++++++-+. .++|++.
T Consensus 516 ~g~l~F~D~~~a~~k~~~~~-----------eh-~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 516 RGDLEFYDTDYADLKDTASP-----------EH-FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred ccceEEEecchhhhhhccCc-----------cc-cccccceECC-CCCEEEEeeehhhhccccceEEEEee
Confidence 78999999875333222221 22 2236789999 4999999987543 5677654
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=6.8e-10 Score=119.58 Aligned_cols=193 Identities=13% Similarity=0.174 Sum_probs=153.0
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEe------c------------CCCeEEEEEecCCCe
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------Y------------PNKLLCVVTCGDDKL 476 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs------~------------d~~~~~l~s~s~d~~ 476 (1128)
.|-+.|+|....||.++|||...++....+.....-.+.-++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567799999999999999999987654433222334445555552 1 112237888999999
Q ss_pred EEEEe-cCCCeEEEec--CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeE
Q 001190 477 IKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 477 i~vWd-~~g~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
|.+++ ..|+....+. .|.++|.++.++. +-..|.+++.|+.+..|+................+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 99999 8888777775 6899999998754 44689999999999999998888888888888899999999999999
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCC-----CCEEEEE-ECCCcEEEEECCC
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QNHFLAV-GEDSQIKFWDMDN 616 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-s~dg~i~iwd~~~ 616 (1128)
++++ +.|.+||+++++.+..|.||.. .|.++.|..+ |.+++++ ..+..+.+|-...
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9874 5799999999999999999998 8999999876 6777764 3566677776544
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.13 E-value=2.7e-08 Score=112.75 Aligned_cols=307 Identities=10% Similarity=0.020 Sum_probs=182.3
Q ss_pred ccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCc
Q 001190 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587 (1128)
Q Consensus 508 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 587 (1128)
+..+++++.+|.+..+|..+++................. ++..+++++ .++.++.+|..+|+.+........ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~-~ 137 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGT----EKGEVIALDAEDGKELWRAKLSSE-V 137 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEc----CCCEEEEEECCCCcEeeeeccCce-e
Confidence 357888888999999998888888776655542223332 456666665 378999999999998877654322 1
Q ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCC---cceEEEcCCCCEEEEEEcCCcEEEEEcccCccc
Q 001190 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN---LPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1128)
Q Consensus 588 v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1128)
.....+ .+..++.++.+|.|+.||.++|+.+........... ...... .+..++.+..++.+..+|..++...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence 111122 245788888899999999999998877654332100 011111 1246778888899999998877432
Q ss_pred cccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeE
Q 001190 665 LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLA 744 (1128)
Q Consensus 665 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~ 744 (1128)
...-... +.+.. ..-++.+.
T Consensus 214 W~~~~~~---------------~~g~~--------------------------------------------~~~~~~~~- 233 (377)
T TIGR03300 214 WEQRVAL---------------PKGRT--------------------------------------------ELERLVDV- 233 (377)
T ss_pred eeecccc---------------CCCCC--------------------------------------------chhhhhcc-
Confidence 2110000 00000 00000000
Q ss_pred EEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCcccccc
Q 001190 745 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 824 (1128)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1128)
... ..+ .+..+++++.+|.+..||...++ .+|....+
T Consensus 234 ------------------~~~----p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~------ 270 (377)
T TIGR03300 234 ------------------DGD----PVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS------ 270 (377)
T ss_pred ------------------CCc----cEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC------
Confidence 000 011 13456677778888888754322 13332210
Q ss_pred ccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEec
Q 001190 825 VAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 902 (1128)
Q Consensus 825 ~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~ 902 (1128)
.....+ .++..+++++ +|.+..+|..+++.+...... ........+ .+..|++++.+|.|+++|.
T Consensus 271 --------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 271 --------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred --------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEEC
Confidence 011122 2345555555 899999999999887665322 222233333 2457888999999999999
Q ss_pred ccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 001190 903 RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942 (1128)
Q Consensus 903 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iw 942 (1128)
.+|+.+.++..+...+..--...++ .|+.++.||.|..+
T Consensus 338 ~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 338 EDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 9999998887666544332222333 47778899988765
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=5.7e-10 Score=117.47 Aligned_cols=241 Identities=12% Similarity=0.218 Sum_probs=170.2
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCC-Ccce---eceeecccccceeEEEEecCCCeEEEEEecCCCe
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~-~~~~---~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~ 476 (1128)
.+.||+..|+.++--.+.+-+++++.|++|++|.+... ..+. ...++..|+.+|.++.|-.|-+ .++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 38899999999988888888999999999999998742 2222 3446889999999999999988 56665 899
Q ss_pred EEEEe-cCCCeEEEec-----CCCCCeEEEeccCCCCccEEEEE-eccCcEEEEecCCCCceeeec-----CCCCeEEEE
Q 001190 477 IKVWE-LSGRKLFNFE-----GHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMGSRVDYD-----APGHWCTTM 544 (1128)
Q Consensus 477 i~vWd-~~g~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~-----~~~~~i~~~ 544 (1128)
|.+|| .-|+++..+. +..+.|.++ ++-+..+++.| +...+|+++|.+..+-...+. +....++++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 99999 8888775332 223345544 34344566655 788999999988766554433 344578999
Q ss_pred EEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEE-EECCCCeeeEEE
Q 001190 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF-WDMDNVNILTST 623 (1128)
Q Consensus 545 ~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i-wd~~~~~~~~~~ 623 (1128)
++.+.|+.++.+-. .|.|.+.|.++|+.+..++...- ....++ .|..+.++....|..+.+ |....+......
T Consensus 883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred EeccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99999999998874 88999999999999887775432 111122 244566777777888888 988777655544
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
..... +.. -.-.-|..++++.....+.+|.-
T Consensus 957 kpppe--pah--flqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 957 KPPPE--PAH--FLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCCCc--chh--hhhccCceeEEeccCcEEEEEec
Confidence 32221 111 11224566777777777777753
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=5.7e-10 Score=133.39 Aligned_cols=227 Identities=19% Similarity=0.278 Sum_probs=168.7
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
+...++-..|.++.=+|... +.+||+.||.|++|.+..++.+.. |+ ..|. ..|+.+.|+.+
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~q 2262 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQ 2262 (2439)
T ss_pred eEeecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhccc
Confidence 33445667899999999988 558999999999999998887643 21 2233 88999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEec---CCCeEEEEe--cCCCeEEEecC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE--LSGRKLFNFEG 492 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s---~d~~i~vWd--~~g~~~~~~~~ 492 (1128)
|.....+..||.+.+|.+.. + .+...+.|.....+..|.. . .+++++ +++.+.+|| ..+..-..-..
T Consensus 2263 Gnk~~i~d~dg~l~l~q~~p-k---~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQASP-K---PYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred CCceeeeccCCceeecccCC-c---ceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeee
Confidence 99999999999999999883 2 3335778999999999986 3 466654 467999999 44443333378
Q ss_pred CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC
Q 001190 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
|.+.++++++.| ..++|++|+.+|.|++||++..+.+..+.. +. ...+++++.. .|.++||++.
T Consensus 2335 H~~gaT~l~~~P--~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2335 HDGGATVLAYAP--KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLS 2398 (2439)
T ss_pred cCCCceEEEEcC--cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEcc
Confidence 999999999977 458999999999999999988777665543 23 4556777764 8899999999
Q ss_pred CCceeeEeccccCCc-e----eEEEEeCCCCEEEEEECCC
Q 001190 573 EGTIKRTYAGFRKKS-N----GVVQFDTTQNHFLAVGEDS 607 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~-v----~~~~~~~~~~~l~~~s~dg 607 (1128)
....+.+++..+... + ..-.+-...++|++++.||
T Consensus 2399 ~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2399 EFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred ccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCC
Confidence 988888777543210 1 1001112345677777776
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.09 E-value=9.3e-08 Score=108.41 Aligned_cols=183 Identities=11% Similarity=0.061 Sum_probs=117.8
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 545 (1128)
.++.++.++.|..+| .+|+.+............... ++..++.++.+|.+..+|.++++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 578888899999999 899988766544332222222 346788889999999999988888877665443222222
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCc----eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeE
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 621 (1128)
+ .+..++.+. .++.++.||..+|+.+..+....... .....+. +..++.+..+|.++.+|.++|+.+.
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 2 234555544 38889999999999887766533210 0111222 3477888889999999999998776
Q ss_pred EEecCCCC--CC---cceEEEcC--CCCEEEEEEcCCcEEEEEcccC
Q 001190 622 STDAEGGL--PN---LPRLRFSK--EGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 622 ~~~~~~~~--~~---v~~v~~sp--~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
........ .. +..+.-+| .+..+++++.+|.+..||..++
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 54321110 00 00111111 3457778888999999998776
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=7.2e-08 Score=120.69 Aligned_cols=258 Identities=12% Similarity=0.122 Sum_probs=163.6
Q ss_pred eEEEeccCCCeEEEE-e-CCeEEEEECCCceEEEEeeC--C------------CCCeeEEEEcCCCCC-EEEEEeCCCcE
Q 001190 835 PCIALSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMS--P------------PPASTFLAFHPQDNN-IIAIGTEDSTI 897 (1128)
Q Consensus 835 ~~~~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~--~------------~~~v~~l~~s~~d~~-~lasg~~dg~v 897 (1128)
..+++++++..+.++ . ++.|++||... ..+..+.+ . -.....+++++ ++. ++++-..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 467888865544444 4 67899999864 44444332 1 12357899998 555 44555566789
Q ss_pred EEEecccceeeeccccc-----------------ccCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCCcccceeEE---e
Q 001190 898 HIYNVRVDEVKSKLKGH-----------------QKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTI---H 956 (1128)
Q Consensus 898 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~---~ 956 (1128)
+++|..++.. .++.+- -..-..++|+| ++.++++.+.++.|++||..++........ .
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877653 222110 11235799999 566777778889999999987653211000 0
Q ss_pred ecCC-----CCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCccccccc-----------cc--CC-----CCCCCeE
Q 001190 957 IPAG-----KTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQW-----------TP--QD-----ALSAPIS 1011 (1128)
Q Consensus 957 ~~~~-----~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~-----------~~--~~-----~h~~~v~ 1011 (1128)
...+ ........++++|++.+|++++ ++.|++||+.++...... .. .. .......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0000 0113567899999998777654 789999999876531110 00 00 0012346
Q ss_pred EEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCC-CCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEc
Q 001190 1012 CAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPS-TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1012 ~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd 1090 (1128)
.+++++||+++++-..++.|++||..++......... ..........+.-..+..+++++ +++++++-+.++.|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 8999999998888888999999999988766443311 00111110112223578899999 689999999999999999
Q ss_pred CCCCCC
Q 001190 1091 PSESEG 1096 (1128)
Q Consensus 1091 ~~~~~~ 1096 (1128)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988763
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=1.4e-09 Score=130.09 Aligned_cols=201 Identities=12% Similarity=0.214 Sum_probs=166.0
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
.+.|-..|.++.=+|...+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4556678899999999999999999999999999999888765543 33 8999999999999 788888899999999
Q ss_pred cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe---ccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 482 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
.+.++....+.|......+.|.. ..+++++ .++.+.+||...... -.....|.+.++++++-|..+.+++|+
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 87888888888998888888754 3466653 568999998654333 234477888999999999999999998
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
. +|.|++||++..+++++++. +. ...++++|+..|.++||++.....+..+..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 4 89999999999988887775 23 457899999999999999998877776653
No 281
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.00 E-value=6.9e-08 Score=94.89 Aligned_cols=271 Identities=11% Similarity=0.062 Sum_probs=167.8
Q ss_pred cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc---CCC-EEEEEeCCCeEEEEEccCCCcc
Q 001190 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DGN-YVGVAFTKHLIQLYSYAGSNDL 441 (1128)
Q Consensus 366 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---dg~-~las~~~d~~i~vwd~~~~~~~ 441 (1128)
.|.+.+|++...+.... ..+....+..+..+.|+- +|. .|+-+..+|.|.++.....+..
T Consensus 45 ~Gkl~Lys~~d~~~~~l----------------~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss 108 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPL----------------DTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS 108 (339)
T ss_pred ccceEEEeecccccCcc----------------ceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence 35677777766554321 011222455677777763 555 5666777899999987654332
Q ss_pred eeceeeccccc---ceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE--EEecCCCCCeEEEeccCCCCccEEEEEe
Q 001190 442 RQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1128)
Q Consensus 442 ~~~~~~~~h~~---~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 515 (1128)
..+..+..-.- ...++.|++-+. -++++-.+|.+.+-+ ...... +.+++|+-+.+...|+... .+++++|+
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-pnlvytGg 185 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-PNLVYTGG 185 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-CceEEecC
Confidence 22222222222 234678999888 688888899998666 444443 4889999999999997654 37999999
Q ss_pred ccCcEEEEecCCCCc-eee-ecCCCCeEEEEEEcC-CCCeEEEeeeccCCCceEEEEeCCC-CceeeEeccccCCceeEE
Q 001190 516 IDGKIKAWLYDTMGS-RVD-YDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVV 591 (1128)
Q Consensus 516 ~dg~i~~wd~~~~~~-~~~-~~~~~~~i~~~~~s~-~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~ 591 (1128)
.|+.+..||++..+. ... ...|...|.++.-+| ++.++++|+. |-.|++||.+. ++++..-.. ++.|..+
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~v--~GGVWRi 259 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAKV--GGGVWRI 259 (339)
T ss_pred CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCcc--ccceEEE
Confidence 999999999994442 222 345666788888776 5778888886 78899999984 555544332 2468888
Q ss_pred EEeCCCC-EEEEEECCCcEEEEECCCCeee---EEEecCCCCCCcceEEEcCCCCEEEEEEc-CCcEE-EEEcccC
Q 001190 592 QFDTTQN-HFLAVGEDSQIKFWDMDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFK-ILANAIG 661 (1128)
Q Consensus 592 ~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~v~~sp~~~~l~~~~~-dg~i~-iw~~~~~ 661 (1128)
..+|.-. .++.++.-...+|-+.+.+... .......+.+-+..-.|......+++++. |+.++ +|-.-++
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 8887543 3344444445566666544322 11111122222333344333456777653 56644 6755443
No 282
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.98 E-value=7.1e-08 Score=94.83 Aligned_cols=247 Identities=16% Similarity=0.115 Sum_probs=158.1
Q ss_pred CCCcEEEEEEeC---CCCcEEEEeeccCeEEEEEccCCceecc-cccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 343 QGSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 343 h~~~V~~v~fsp---dg~~lla~gs~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
..+.+..+.|.- +|...++-+-.+|.|.++.......... ..+.. .+-....-.++.|++-|
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~ 133 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSG 133 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccC
Confidence 344566666652 4443456666788888887643322110 00000 00001134578899999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c-CCCeEEE-ecCCCC
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFN-FEGHEA 495 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~-~g~~~~~-~~~h~~ 495 (1128)
..++++..+|.+.+-+..... +.....++.|.-..+.+.|+..... ++++|++|+.+..|| . .++.+.. .+-|..
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 999999999998855544332 3333468899999999999876665 899999999999999 3 5555544 567888
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCC--eEEEeeeccCCCceEEEEeCCC
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS--RLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
.|.++.-++. ...+|++|+.|..|++||.+.......-...++.|..+..+|.-. .++++- -+-.++.+...
T Consensus 212 GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CM-----h~G~ki~~~~~ 285 (339)
T KOG0280|consen 212 GVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACM-----HNGAKILDSSD 285 (339)
T ss_pred ceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHH-----hcCceEEEecc
Confidence 9999987654 568999999999999999997766665555667899999998544 333332 22245555544
Q ss_pred Cce-----eeEeccccCCceeEEEEeCC----CCEEEEEE-CCCcEE-EEECCC
Q 001190 574 GTI-----KRTYAGFRKKSNGVVQFDTT----QNHFLAVG-EDSQIK-FWDMDN 616 (1128)
Q Consensus 574 ~~~-----~~~~~~~~~~~v~~~~~~~~----~~~l~~~s-~dg~i~-iwd~~~ 616 (1128)
+.. ....+.|.. +++..| ...|++++ .|+.++ +|-.-+
T Consensus 286 ~~~e~~~~~~s~~~hdS-----l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDS-----LCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred cccchheeeeccccccc-----eeeccccccccceeeeeeccccceeeeeeecc
Confidence 322 223333333 444433 24577765 455544 554333
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.98 E-value=5.8e-09 Score=114.16 Aligned_cols=270 Identities=16% Similarity=0.246 Sum_probs=179.7
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCc-ee---c--------------------------ccccc
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RL---V--------------------------SKPFK 386 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~-~~---~--------------------------~~~~~ 386 (1128)
....+.-.+++.++.++|.|+- +|.++.-|. .|-|+...- .. + ...--
T Consensus 17 kslsl~v~~~~~a~si~p~grd-i~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai 94 (1081)
T KOG0309|consen 17 KSLSLKVDGGFNAVSINPSGRD-IVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI 94 (1081)
T ss_pred ceeEEEecCcccceeeccccch-hhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh
Confidence 3444555667788888888874 455554442 233332211 00 0 01123
Q ss_pred cccccccCccccceeccCCCcceEEEEEccC-CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCe
Q 001190 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465 (1128)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~ 465 (1128)
+|.++.+......-++.||+..|+.+.|.|. -..||+++.|..+..||+.+... .+..+..-...-..++|+....
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p- 171 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP- 171 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc-
Confidence 4666666666666789999999999999985 45889999999999999988543 3333444555678899987665
Q ss_pred EEEEEecCCCeEEEEe--cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-cCCCCeEE
Q 001190 466 LCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCT 542 (1128)
Q Consensus 466 ~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~i~ 542 (1128)
.+.+.+..+.|.+|| ..+.++..+++|...|+.+.|..... ..+.+.+.||+|++||.+........ .....+|.
T Consensus 172 -~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw 249 (1081)
T KOG0309|consen 172 -NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIW 249 (1081)
T ss_pred -chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcce
Confidence 355566778999999 55678899999999999998865433 46889999999999999766554432 33444677
Q ss_pred EEEEcCCCCeEEEeeeccCCCceEEEE---------eCCC-CceeeEeccccCCceeEEEE--------eCC--CCEEEE
Q 001190 543 TMLYSADGSRLFSCGTSKDGDSFLVEW---------NESE-GTIKRTYAGFRKKSNGVVQF--------DTT--QNHFLA 602 (1128)
Q Consensus 543 ~~~~s~~g~~l~~~~~~~~~~~~i~~w---------d~~~-~~~~~~~~~~~~~~v~~~~~--------~~~--~~~l~~ 602 (1128)
.-.+.|-|+-...--. .|+..+.++ +..+ .+++.+|.||.+ .|.-.-| .-+ .-+|++
T Consensus 250 ~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVT 326 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVT 326 (1081)
T ss_pred eccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEE
Confidence 7777776653332211 123344443 3333 467899999987 3322222 111 237999
Q ss_pred EECCCcEEEEECCC
Q 001190 603 VGEDSQIKFWDMDN 616 (1128)
Q Consensus 603 ~s~dg~i~iwd~~~ 616 (1128)
-+.|..+++|-+.+
T Consensus 327 WSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 327 WSKDQTLRLWPIDS 340 (1081)
T ss_pred eecCCceEeeeccH
Confidence 99999999998754
No 284
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=7.9e-08 Score=106.99 Aligned_cols=115 Identities=14% Similarity=0.343 Sum_probs=87.6
Q ss_pred eecCCCcEE-EEEEeCCCCcEEEEeec----cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 340 SLHQGSTVI-SMDFHPSHQTLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 340 ~~~h~~~V~-~v~fspdg~~lla~gs~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.+...+.|. -..|+|... ++|+++. .|.|.|| .++|++...-. -.-.+++++|
T Consensus 10 E~~Dsdavsti~SWHPseP-lfAVA~fS~er~GSVtIf-adtGEPqr~Vt--------------------~P~hatSLCW 67 (1416)
T KOG3617|consen 10 EFLDSDAVSTISSWHPSEP-LFAVASFSPERGGSVTIF-ADTGEPQRDVT--------------------YPVHATSLCW 67 (1416)
T ss_pred ecccccccccccccCCCCc-eeEEEEecCCCCceEEEE-ecCCCCCcccc--------------------cceehhhhcc
Confidence 333444444 345999988 7787754 5789998 46777543211 1224567999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+|..-.||.|-.-|.+.+|...+.+.-. ....|..+|..+.||++|. .++|+..-|.|.+|.
T Consensus 68 Hpe~~vLa~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 68 HPEEFVLAQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWR 129 (1416)
T ss_pred ChHHHHHhhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEE
Confidence 9999999999999999999988755332 3457999999999999999 899999999999998
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=2.7e-07 Score=104.02 Aligned_cols=214 Identities=14% Similarity=-0.003 Sum_probs=127.7
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeec---cCeEEEEEccCCceecccccccccccccCccccceecc
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1128)
+|-.+..-......+.. ..+....|||||+++++..+. +..|.++|+.+|+... +.
T Consensus 171 l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt 229 (419)
T PRK04043 171 IVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IA 229 (419)
T ss_pred EEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------Ee
Confidence 55554433333333333 378899999999864443233 3578899998876542 33
Q ss_pred CCCcceEEEEEccCCCEEEEEe-C--CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--eEE
Q 001190 404 DVPISVSRVAWSPDGNYVGVAF-T--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIK 478 (1128)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~-~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~i~ 478 (1128)
...+.+...+|||||+.|+... . +..|.++|+.+++..+ +..+.+......|+|||+.+++++ ...+ .|.
T Consensus 230 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy 304 (419)
T PRK04043 230 SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIF 304 (419)
T ss_pred cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEEEEE-CCCCCceEE
Confidence 3455667788999999887543 2 3468888888876332 333443344568999999744443 3333 577
Q ss_pred EEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc---------CcEEEEecCCCCceeeecCCCCeEEEEEEcCC
Q 001190 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (1128)
Q Consensus 479 vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~ 549 (1128)
+.|..+.....+...... ...|+| +|+.|+..+.. ..|.+.|++++... .+... .......|+||
T Consensus 305 ~~dl~~g~~~rlt~~g~~--~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPD 378 (419)
T PRK04043 305 MKKLNSGSVEQVVFHGKN--NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSD 378 (419)
T ss_pred EEECCCCCeEeCccCCCc--CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCC
Confidence 777433333333222111 236655 66777666543 25667777665443 33322 23346889999
Q ss_pred CCeEEEeeeccCCCceEEEEeCCC
Q 001190 550 GSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 550 g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
|+.++..... .+...+.+.++..
T Consensus 379 G~~I~f~~~~-~~~~~L~~~~l~g 401 (419)
T PRK04043 379 GGSIMFIKYL-GNQSALGIIRLNY 401 (419)
T ss_pred CCEEEEEEcc-CCcEEEEEEecCC
Confidence 9998887643 2345577777654
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.92 E-value=7.4e-07 Score=111.79 Aligned_cols=245 Identities=14% Similarity=0.120 Sum_probs=159.6
Q ss_pred EEEEEccC-CCEEEEEeCCCeEEEEEccCCCcceeceeec-----------ccccceeEEEEecCCCeEEEEEecCCCeE
Q 001190 410 SRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-----------AHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 410 ~~l~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~-----------~h~~~v~~l~fs~d~~~~~l~s~s~d~~i 477 (1128)
..++++++ |..+++-..++.|++||..+. .+....... ++-..-..+++.+++.. +.++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCCCceE
Confidence 46889875 556666677889999998653 332211100 01123578999998873 33444445789
Q ss_pred EEEecCCCeEEEecCC-----------------CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC---
Q 001190 478 KVWELSGRKLFNFEGH-----------------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--- 537 (1128)
Q Consensus 478 ~vWd~~g~~~~~~~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--- 537 (1128)
+++|..+..+.++.+- -..-+.+++++. ++.++++.+.++.|++||...+... .+.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9999544555555321 012356788653 4466777778899999998664332 11111
Q ss_pred ------------CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc------------cC--------
Q 001190 538 ------------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------RK-------- 585 (1128)
Q Consensus 538 ------------~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~------------~~-------- 585 (1128)
......++++|+|+.|+++.. +++.|++||+.++.......+. .+
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 123567999999997766553 5789999999876532111000 00
Q ss_pred CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC-----------CCCCCcceEEEcCCCCEEEEEEcCCcEE
Q 001190 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----------GGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1128)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 654 (1128)
.....++++++|+.+++-+.++.|++||..++......... ........++++++|+++++-+.++.|+
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 02346889999998888889999999999887765433210 1122457899999999888888899999
Q ss_pred EEEcccC
Q 001190 655 ILANAIG 661 (1128)
Q Consensus 655 iw~~~~~ 661 (1128)
+||+.++
T Consensus 884 vid~~~~ 890 (1057)
T PLN02919 884 YLDLNKG 890 (1057)
T ss_pred EEECCCC
Confidence 9999876
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=2.3e-09 Score=112.96 Aligned_cols=219 Identities=16% Similarity=0.210 Sum_probs=160.3
Q ss_pred EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc-------ceeeecccccccCeeEEEEcCCCCEEEEEcCCC
Q 001190 865 MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-------DEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (1128)
Q Consensus 865 ~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg 937 (1128)
+..+.+|...|..++--. +.+-+++++.|++|++|.++. ..+..++..|..+|.++.|-.+-++++++ ||
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 456788999999887666 667788999999999999863 24667889999999999999999898865 78
Q ss_pred cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC--CCEEEEE-e-cCeEEEEecCCcccccccccCCC--CCCCeE
Q 001190 938 QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD--QVRMLVV-H-ETQLAIYDASKMERIRQWTPQDA--LSAPIS 1011 (1128)
Q Consensus 938 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--~~~l~~~-~-d~~i~v~d~~~~~~~~~~~~~~~--h~~~v~ 1011 (1128)
.|.+||.--+..+....- ....+.+..+..-++ ...++++ + +.+++++|.+.++....+....+ ...-+.
T Consensus 805 giHlWDPFigr~Laq~~d----apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMED----APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeecccccchhHhhhc----CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 899999877765442211 111134444444443 3444443 3 88999999999988887765422 246689
Q ss_pred EEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEE-Ec
Q 001190 1012 CAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV-ME 1090 (1128)
Q Consensus 1012 ~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~i-Wd 1090 (1128)
+++..+.|++++++-..|+|.+.|..+|+++...++.. . ..+-++. | ..+.++....|.++.+ |-
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme-----------c-dllqlaa-p-sdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME-----------C-DLLQLAA-P-SDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc-----------c-hhhhhcC-c-hhHHHHhhcccceeEeeeh
Confidence 99999999999999999999999999999988777321 1 1122322 4 2466788888888888 98
Q ss_pred CCCCCCCcccCCCC
Q 001190 1091 PSESEGKWGVSPPV 1104 (1128)
Q Consensus 1091 ~~~~~~~w~~~~p~ 1104 (1128)
..++-+.....||.
T Consensus 947 aldgimh~q~kppp 960 (1034)
T KOG4190|consen 947 ALDGIMHLQDKPPP 960 (1034)
T ss_pred hcCCeeeeccCCCC
Confidence 88886655544443
No 288
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=2.7e-07 Score=102.85 Aligned_cols=566 Identities=11% Similarity=0.090 Sum_probs=275.0
Q ss_pred eEEEEEccCCCEEEEEe----CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC
Q 001190 409 VSRVAWSPDGNYVGVAF----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1128)
Q Consensus 409 V~~l~~spdg~~las~~----~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~ 483 (1128)
-+-..|+|...++|+++ ..|.|.||- ++|++-+.. +..- .+++++|+|..- +|+.|=.-|.+.+|. .+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCC
Confidence 33457999999998886 357888874 556644321 2222 366799999887 788998899999999 44
Q ss_pred CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC--C---CC-eEEEEEEcCCCCeE----
Q 001190 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--P---GH-WCTTMLYSADGSRL---- 553 (1128)
Q Consensus 484 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~---~~-~i~~~~~s~~g~~l---- 553 (1128)
.+.-.....|..+|..+.|++ +|..++++..-|.+.+|.++..+....... | .. ...+..+++++.-+
T Consensus 91 ~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la 168 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA 168 (1416)
T ss_pred ceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence 444445567999999999976 678999999999999998875443332221 1 11 23455566664321
Q ss_pred --EEeeeccCCCceEE-EEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCC
Q 001190 554 --FSCGTSKDGDSFLV-EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 554 --~~~~~~~~~~~~i~-~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
++.+ | +..+- .++.+.....+... -.-.|+|..++.++.+|+|+-.| ++|+..........
T Consensus 169 KaaVtg---D-e~alD~~fnwk~~~a~rs~~---------ksgv~~g~~F~~~~~~GtVyyvd-q~g~~~~V~k~dS~-- 232 (1416)
T KOG3617|consen 169 KAAVTG---D-ESALDEPFNWKESLAERSDE---------KSGVPKGTEFLFAGKSGTVYYVD-QNGRQRTVHKLDSE-- 232 (1416)
T ss_pred hhhccC---c-hhhhcccccCccchhhcccc---------ccCCCCCcEEEEEcCCceEEEEc-CCCcEEEEEEccch--
Confidence 1221 1 21111 22211110000000 11246788889999999998887 35666555554332
Q ss_pred CcceEEEcCCCCEEEEEEcCCcEEEEEcc-cCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCC
Q 001190 631 NLPRLRFSKEGNLLAVTTADNGFKILANA-IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (1128)
..+-|.+.-.-+++--.+-.+.++-.. +|..... ..+.++ |+.
T Consensus 233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~--------------~~vk~s--gk~------------------ 276 (1416)
T KOG3617|consen 233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEER--------------CAVKVS--GKL------------------ 276 (1416)
T ss_pred --HHHHHhcccceEEEEeeeceeeEEEecCCCchHHh--------------hhhhhc--ccc------------------
Confidence 345566644444444444444433322 1210000 000000 000
Q ss_pred CCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeE
Q 001190 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK 789 (1128)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 789 (1128)
| ...|. ++++...|.++ . ..+. . ......+.+++++..+..+..+...|.+.
T Consensus 277 -------G-----grqGg-iA~sEssGvLr---~-----~eKy---g----~e~ge~~~c~cY~~~~~~l~agt~~gnv~ 328 (1416)
T KOG3617|consen 277 -------G-----GRQGG-IACSESSGVLR---K-----SEKY---G----LELGEGILCMCYGEKEIRLWAGTKEGNVT 328 (1416)
T ss_pred -------C-----CccCc-ccccccccccc---C-----Ccch---h----hhcCCceEEEEEeccceEEEecccCCcEE
Confidence 0 00010 12221112110 0 0000 0 11446789999999999999999999999
Q ss_pred eeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEee
Q 001190 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM 869 (1128)
Q Consensus 790 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~ 869 (1128)
+|.-....+ ........|.+.+... ..+.|+.+.|.|-...+++-+...|.+..-+. .+.
T Consensus 329 ~w~~v~~~f------~g~p~~d~w~l~~~~e---------~~g~I~~i~Wg~~k~~~avn~~~~v~ll~E~~-----l~~ 388 (1416)
T KOG3617|consen 329 IWLDVNKGF------QGDPTIDVWTLNGKRE---------SLGKISLIRWGPIKSTAAVNTEEDVVLLGENS-----LTV 388 (1416)
T ss_pred EeeecCccc------cCCCCcceEEecCchh---------hccceEEEEeccccchhhhhhhhheeeeccCc-----hHH
Confidence 996332211 1112344555543322 34667888887755555544322222211100 011
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc
Q 001190 870 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949 (1128)
Q Consensus 870 ~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~ 949 (1128)
.|.+...++.-+. ..+.+-...+|.. ..++ ..-++.+++.+.+ .|+ .....+|..|++.+...
T Consensus 389 ~h~~~~~A~q~ss------------~S~~L~hc~sGv~-~~l~-~~~~~~gi~l~e~--~lv-vwNgr~v~~y~lq~SG~ 451 (1416)
T KOG3617|consen 389 KHRGKMAAIQTSS------------NSFTLLHCTSGVS-QDLK-LSIPSAGICLGEK--QLV-VWNGRTVVTYDLQTSGS 451 (1416)
T ss_pred HHhhhhHHhhhcC------------CceEEEeeccchh-hhhh-hccchhhheeccc--eEE-EEcCceEEEEEecccch
Confidence 1222222222221 2222222112211 1111 1223445555433 233 34456788888864321
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCC
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1029 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg 1029 (1128)
........+. .....++....+- .+.....|.++.+. |.....+..... .+.|.-+.+ -|.++.++...+
T Consensus 452 la~~~~~tF~----cet~~la~~nqN~--ycies~~Vfvrt~q-Gtv~q~i~~sei-Eg~~~~ldi--~g~~l~v~t~~~ 521 (1416)
T KOG3617|consen 452 LATIQCTTFS----CETTSLAIVNQNL--YCIESDKVFVRTLQ-GTVRQEISLSEI-EGVVVLLDI--MGELLIVQTVST 521 (1416)
T ss_pred hHHHhhhhhc----cccchHhHhhcce--EEeccCcEEEEecc-hhhhhhccchhc-cCceehhhh--ccceeEEeehHH
Confidence 1111111111 1122233333322 22233445555443 222222222211 334444444 378899888888
Q ss_pred cEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC-EEEEEECC----CcEEEEcCCCCCCC-cccCCC
Q 001190 1030 NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN-QFAIGLTD----GSVKVMEPSESEGK-WGVSPP 1103 (1128)
Q Consensus 1030 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~s~~~d----g~i~iWd~~~~~~~-w~~~~p 1103 (1128)
.++-+|+..-+....... .+..... ...++...+..+..... -++.+..+ .++.+||++.++.. -+...|
T Consensus 522 ~~k~~dvsr~e~ka~~~~-~s~~~~~---d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE~ 597 (1416)
T KOG3617|consen 522 VAKRLDVSRAELKAVSYF-SSDRGMT---DTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLEP 597 (1416)
T ss_pred HHHHhhhhhhcccccccc-ccccccc---CCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccCc
Confidence 888888876655443321 1111110 12223333333332222 22333333 25899999988643 233456
Q ss_pred CCCCccCCCCC
Q 001190 1104 VDNGILNSRTT 1114 (1128)
Q Consensus 1104 ~~~~~~~~~~~ 1114 (1128)
..|-+--+.++
T Consensus 598 ETNakkEs~ts 608 (1416)
T KOG3617|consen 598 ETNAKKESSTS 608 (1416)
T ss_pred cccccccccCC
Confidence 65555444333
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.88 E-value=1.4e-06 Score=86.54 Aligned_cols=236 Identities=16% Similarity=0.184 Sum_probs=142.6
Q ss_pred EEEeccCCCeEEEEeCCeEEEEECCCc--eEEEEee---CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 836 CIALSKNDSYVMSATGGKISLFNMMTF--KVMTTFM---SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 836 ~~~~s~dg~~la~~~dg~i~vwd~~~~--~~~~~~~---~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
.++.+.||++||+..|..|.|-..++. ..+.... .....-..++||| |+.+||.+...|+|++||+....+. .
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-V 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-E
Confidence 367889999999999999888766532 1222222 2334578999999 9999999999999999999854432 2
Q ss_pred cc-c------cccCeeEEEEcCCC------CEEEEEcCCCcEEEEECCCCc---ccceeEEeecCCCCCCCccEEEEcCC
Q 001190 911 LK-G------HQKRITGLAFSTSL------NILVSSGADAQLCVWSIDTWE---KRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1128)
Q Consensus 911 l~-~------h~~~V~~l~~s~d~------~~l~s~~~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~v~~v~~s~d 974 (1128)
+. + -+..|.++.|.+-. ..|+....+|.++=|-+..+. -.....+. ...+.+..+..+.++|.
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-f~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-FSSHYPHGINSAVYHPK 158 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-ecccCCCceeEEEEcCC
Confidence 22 1 23567778775432 245666778888877764321 11122222 33344478999999999
Q ss_pred CCEEEEEe--cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEE--EEEecCCc------EEEEecCCCceEEE
Q 001190 975 QVRMLVVH--ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLV--FATFCDGN------IGVFDADTLRLRCY 1044 (1128)
Q Consensus 975 ~~~l~~~~--d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l--~t~~~dg~------i~vwd~~~~~~~~~ 1044 (1128)
.++|++++ ...-..... . ...+++-..-.+.-|. ++..+|+. -.+|.+-+.....+
T Consensus 159 h~LLlVgG~~~~~~~~s~a-~-------------~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKA-S-------------SCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred CCEEEEeccCCCCCccccc-c-------------ccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence 99988864 111000000 0 1122222221111111 11222221 23444444333332
Q ss_pred eCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC--CCCcccC
Q 001190 1045 IAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES--EGKWGVS 1101 (1128)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~--~~~w~~~ 1101 (1128)
.. .....+..+.-+| |+.+|++...+|.|.+|++.+- +.+|...
T Consensus 225 ~~------------~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 225 QG------------QEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cc------------cCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 22 3445677888899 7999999999999999999854 5568775
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.86 E-value=7.1e-07 Score=94.12 Aligned_cols=225 Identities=14% Similarity=0.146 Sum_probs=142.2
Q ss_pred CCeEEEEECCCceEEEEeeCC--CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCC
Q 001190 851 GGKISLFNMMTFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 851 dg~i~vwd~~~~~~~~~~~~~--~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 928 (1128)
+|.|..||..+|+.+....-. .....+..+ + ++..+++++.++.|+.||..+|+.+.++.. .+++..... .++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccc
Confidence 578999999999998887641 122222223 2 445666778999999999999998877664 222222122 2345
Q ss_pred EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCC-
Q 001190 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDAL- 1006 (1128)
Q Consensus 929 ~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h- 1006 (1128)
.++.++.|+.|..+|..+|+.+........... ..........++..++++. ++.+..+|..+|+.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA--GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC--STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc--ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 566666888999999999998666333221111 1112223333366677665 899999999999997776653211
Q ss_pred CCC------eEEEEEeeCCCEEEEEecCCc-EEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEE
Q 001190 1007 SAP------ISCAVYSCNSQLVFATFCDGN-IGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1079 (1128)
Q Consensus 1007 ~~~------v~~l~~s~dg~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s 1079 (1128)
... +..-....++ .++.+..++. +.+ |+.+|+.+.... . +.. .. .... +++.++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~-----------~~~--~~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-I-----------SGI--YS-LPSV-DGGTLYV 217 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-S-----------S-E--CE-CEEC-CCTEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-C-----------CCc--cC-Ccee-eCCEEEE
Confidence 111 1222233345 7777777886 555 999999765332 1 111 11 1234 5677887
Q ss_pred EECCCcEEEEcCCCCCCCcc
Q 001190 1080 GLTDGSVKVMEPSESEGKWG 1099 (1128)
Q Consensus 1080 ~~~dg~i~iWd~~~~~~~w~ 1099 (1128)
++.++.|..||+.+++.+|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 77999999999999999995
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.85 E-value=9.5e-07 Score=90.91 Aligned_cols=185 Identities=11% Similarity=0.130 Sum_probs=129.6
Q ss_pred EEEeccCCCeEEEEe------CCeEEEEECC-CceEEEEeeCCCCCeeEEEEcCCCCCEEEEEe----------------
Q 001190 836 CIALSKNDSYVMSAT------GGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT---------------- 892 (1128)
Q Consensus 836 ~~~~s~dg~~la~~~------dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~---------------- 892 (1128)
.-+||+||++|.+.. .|.|-|||.. +.+.+.++..|.-.-..+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 578999999999884 2679999999 7888999988887788899999 887776653
Q ss_pred --CCCcEEEEecccceeeec--c--cccccCeeEEEEcCCCCEEEEEcCCC-------cEEEEECCCCcccceeEEeecC
Q 001190 893 --EDSTIHIYNVRVDEVKSK--L--KGHQKRITGLAFSTSLNILVSSGADA-------QLCVWSIDTWEKRKSVTIHIPA 959 (1128)
Q Consensus 893 --~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~~l~s~~~Dg-------~i~iwd~~~~~~~~~~~~~~~~ 959 (1128)
.+-++...|..+|+++.+ + ..|...|..+++.++|..++..-..| .|-+++-.. ....+......
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~ 211 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQ 211 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHH
Confidence 233466677888888766 4 34888999999999987666543322 244444333 11111111000
Q ss_pred -CCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCc
Q 001190 960 -GKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN 1030 (1128)
Q Consensus 960 -~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~ 1030 (1128)
......+-+|++++++.++++++ .+.+.+||..+++.+..... ..+..++-.+++ ++++.+ .|.
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-----~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-----PDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-----CceeeeeecCCc-eEEeCC-Ccc
Confidence 01116788999999999998875 78999999999999887664 345666666666 555554 444
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.84 E-value=7.4e-08 Score=94.96 Aligned_cols=249 Identities=16% Similarity=0.202 Sum_probs=154.4
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCC--cceeceeecccc------------cceeEEEEecCCCeEEEEE
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHV------------GAVNDLAFAYPNKLLCVVT 470 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~------------~~v~~l~fs~d~~~~~l~s 470 (1128)
....|+++.|...|.|||+|...|.|.+|.-+... ..+-+..+++|. ..|..+.|..++.+-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999876432 122223455664 3588899988766556677
Q ss_pred ecCCCeEEEEecCCCeEEEec----------CCCCCeEEEeccCCCCccEEEEEe-ccCcEEEEecCCCCceeeecCCCC
Q 001190 471 CGDDKLIKVWELSGRKLFNFE----------GHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGSRVDYDAPGH 539 (1128)
Q Consensus 471 ~s~d~~i~vWd~~g~~~~~~~----------~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~ 539 (1128)
.+.|++|++|..-.+.+.... ...+++++..-. .+--.+ .|..|.. ..+......|..
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l------~lprls~hd~iiaa-----~p~rvyaNaH~y 173 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKEL------LLPRLSEHDEIIAA-----KPCRVYANAHPY 173 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHh------hcccccccceEEEe-----ccceecccccee
Confidence 778999999993222221111 112222221100 000000 1111111 112222345677
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc---eeeEeccccC----CceeEEEEeCCC-CEEEEEECCCcEEE
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRK----KSNGVVQFDTTQ-NHFLAVGEDSQIKF 611 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~----~~v~~~~~~~~~-~~l~~~s~dg~i~i 611 (1128)
.|.++.|+.|.+.++++- +-.|.+|++.-.. .+..++.|.. ..|++..|+|.. ..+...+..|.|++
T Consensus 174 hiNSiS~NsD~et~lSaD-----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 174 HINSISFNSDKETLLSAD-----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred EeeeeeecCchheeeecc-----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 899999999999999874 8889999876432 2222333321 246777888865 55666778999999
Q ss_pred EECCCCee------eEEEec--------CCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccC
Q 001190 612 WDMDNVNI------LTSTDA--------EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1128)
Q Consensus 612 wd~~~~~~------~~~~~~--------~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 670 (1128)
-|++...+ +..... .+-...|..+.|+++|+++++-+ --++++||.+..+.++++..-
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~ 320 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPM 320 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeech
Confidence 99874321 111110 11233578899999999988765 458999999887666665533
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.80 E-value=4.9e-06 Score=82.79 Aligned_cols=231 Identities=12% Similarity=0.152 Sum_probs=135.7
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCC--CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEE
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN 489 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~--~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~ 489 (1128)
++.++||+.||.. .|..|.|=..+.. ..+......+...-.-+-++||||+. +||.+...|+|+++|..|..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEecccceeEE
Confidence 6778999999877 4556666554432 11121112223334567899999999 89999999999999977777766
Q ss_pred ecCCC-------CCeEEEeccCCCC----ccEEEEEeccCcEEEEecCCC-----CceeeecC---CCCeEEEEEEcCCC
Q 001190 490 FEGHE-------APVYSICPHHKEN----IQFIFSTAIDGKIKAWLYDTM-----GSRVDYDA---PGHWCTTMLYSADG 550 (1128)
Q Consensus 490 ~~~h~-------~~v~~~~~~~~~~----~~~l~s~~~dg~i~~wd~~~~-----~~~~~~~~---~~~~i~~~~~s~~g 550 (1128)
+.... ..|..+.|..... ...|++...+|.++-|-+..+ .....+.. ....|.++.+.|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 64422 3456665543221 125677778888888876332 22223322 24589999999999
Q ss_pred CeEEEeeeccCCCc-------eEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEE
Q 001190 551 SRLFSCGTSKDGDS-------FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST 623 (1128)
Q Consensus 551 ~~l~~~~~~~~~~~-------~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~ 623 (1128)
++|+++|....+++ -+..|.+-++.+ ......+.+...-... .+..+|.+-+.+.....
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-----------yyk~v~~~~~~~~~~~---~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-----------YYKQVTSSEDDITASS---KRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCC-----------cEEEccccCccccccc---cccceeeccceeeeecc
Confidence 99988875332221 122232221111 1100011111110011 11234444333322211
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
......|..|..||||..||+...+|.|.+|++.+-
T Consensus 226 --~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 226 --GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred --ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 123447899999999999999999999999999764
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.79 E-value=5.3e-08 Score=100.31 Aligned_cols=164 Identities=17% Similarity=0.148 Sum_probs=112.8
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE-
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA- 424 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 424 (1128)
.++.+.++|+|+ ++|++..+....++++..... ..++++. ..+.. .-+++.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~---------~~v~~---~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDV---------SCVPK---RPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeE---------eeccc---CcceeeeeeccceEEEEe
Confidence 456677788888 888888888877888765443 1122211 01111 22333443444444443
Q ss_pred --eCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE-ecCCCCCeEEE
Q 001190 425 --FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN-FEGHEAPVYSI 500 (1128)
Q Consensus 425 --~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~-~~~h~~~v~~~ 500 (1128)
+....+.+|....+.+.. +-||-..+++++|+||++ +++++..|..|+|-. ..-..+.. ..||..-|..+
T Consensus 127 kagD~~~~di~s~~~~~~~~----~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEP----ILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcch----hhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 455567777766554432 569999999999999999 899999999999977 33333433 35799999999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeec
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 535 (1128)
++.+ +..|++++.|+++++||+.+++....+.
T Consensus 201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecc---CceeeecCCCCcEEEEecccCCcccccc
Confidence 9753 3579999999999999999888775444
No 295
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=4.3e-06 Score=94.32 Aligned_cols=198 Identities=10% Similarity=-0.008 Sum_probs=123.3
Q ss_pred ceEEEEEccCCCE-EEEEeC---CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC--CeEEEEe
Q 001190 408 SVSRVAWSPDGNY-VGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE 481 (1128)
Q Consensus 408 ~V~~l~~spdg~~-las~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d--~~i~vWd 481 (1128)
.+....|||||+. ++..+. +..|.++|+.+|+... +....+......|+|||+. ++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEE
Confidence 7788999999985 665443 3468999998886543 3334555667889999986 34444444 4677778
Q ss_pred cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe-ccC--cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 482 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
..+.....+..+.+......|+| ||+.|+-.+ ..+ .|.+.|+++++...... .+.. ...|||||+.++....
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred CCCCcEEEcccCCCccCccEECC--CCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEc
Confidence 44444555654444333446766 666555554 334 46666776555433222 2221 2489999999988765
Q ss_pred ccC-----CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC---CcEEEEECCCCe
Q 001190 559 SKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVN 618 (1128)
Q Consensus 559 ~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~ 618 (1128)
..+ +...|.+.|+.++.......+ . ......|+|||+.++..+.+ ..+.+.++....
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRRLTAN-G--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEECCCC-C--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 321 125788999988865433322 1 23357899999988876632 346677775543
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=1.2e-05 Score=84.87 Aligned_cols=219 Identities=16% Similarity=0.125 Sum_probs=140.4
Q ss_pred eEEEecc-CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEc-CCCCCEEEEEeCCCcEEEEecccceeeecc
Q 001190 835 PCIALSK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFH-PQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (1128)
Q Consensus 835 ~~~~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s-~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 911 (1128)
.+++|.+ ++.++.+.- .+.|..|+..+++... +.... ...+++. + ++.++++ .. +.+.++|..+++.....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v~-~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYVA-DS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEEE-ET-TCEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEEE-Ec-CceEEEecCCCcEEEEe
Confidence 3578887 555555554 7889999998876643 22222 6777887 5 6665554 43 44566698888544333
Q ss_pred cc-----cccCeeEEEEcCCCCEEEEEcCC--------CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE
Q 001190 912 KG-----HQKRITGLAFSTSLNILVSSGAD--------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 912 ~~-----h~~~V~~l~~s~d~~~l~s~~~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 978 (1128)
.. .....+.+++.++|++.++.... |.|..++.. ++... ..... .....++|+||++.|
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~------~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGL------GFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEE------SSEEEEEEETTSSEE
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCc------ccccceEECCcchhe
Confidence 22 34568899999999988876543 446666666 34222 22221 556899999999988
Q ss_pred EEEe--cCeEEEEecCCccc-c---cccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCC
Q 001190 979 LVVH--ETQLAIYDASKMER-I---RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLS 1052 (1128)
Q Consensus 979 ~~~~--d~~i~v~d~~~~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1052 (1128)
++++ .+.|..|++..... + ..+.......+....+++..+|++.++....+.|.+++.+ |+++..+..+
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---- 223 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---- 223 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S----
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC----
Confidence 8764 77888888864322 1 1221111102347899999999988887789999999987 9988888822
Q ss_pred CcccCCCCccceEEEEEecCCCC-EEEEE
Q 001190 1053 PSVLNGSQTVYPLVVAAHPLEPN-QFAIG 1080 (1128)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~p~~~~-~l~s~ 1080 (1128)
...+++++|...+.+ +++|.
T Consensus 224 --------~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 --------VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --------SSSEEEEEEESTTSSEEEEEE
T ss_pred --------CCCEEEEEEECCCCCEEEEEe
Confidence 125689999533444 44443
No 297
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.75 E-value=0.0014 Score=76.34 Aligned_cols=600 Identities=13% Similarity=0.091 Sum_probs=291.0
Q ss_pred eecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC--
Q 001190 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-- 417 (1128)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 417 (1128)
.++..+-..|+.+-++| +|.+||.-|.=.+-.+.+......+ +.+. ..+. .-++|..++.-.+
T Consensus 302 ~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy-~~il-----------et~~-NLgPI~Dm~Vvd~d~ 366 (1096)
T KOG1897|consen 302 YLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY-VVIL-----------ETFV-NLGPIVDMCVVDLDR 366 (1096)
T ss_pred ecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch-hhhh-----------hhcc-cccceeeEEEEeccc
Confidence 34556667788888888 5788988776666666554332110 0000 0011 2347777776432
Q ss_pred --CCEEEEEe---CCCeEEEEEccCCCcceeceeecccccceeEEE--EecCCCeEEEEEecCCCeEEEEecCCCeE-EE
Q 001190 418 --GNYVGVAF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWELSGRKL-FN 489 (1128)
Q Consensus 418 --g~~las~~---~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~--fs~d~~~~~l~s~s~d~~i~vWd~~g~~~-~~ 489 (1128)
+..+++|+ .||++++..-.-|-.......+.| -..++.+. +.++-..+++++-. + .-++...+++.. ..
T Consensus 367 q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~-eTrvl~i~~e~ee~~ 443 (1096)
T KOG1897|consen 367 QGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-S-ETRVLNISEEVEETE 443 (1096)
T ss_pred cCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-c-ceEEEEEccceEEec
Confidence 34566664 488899876543322111123555 44577777 54432221333333 2 233444333321 12
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEE
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~w 569 (1128)
..+.......+..+.- ++..|+=. ....||+++-. +....+...+.. +..+.+.+...++.++ +++.+...
T Consensus 444 ~~gf~~~~~Tif~S~i-~g~~lvQv-Ts~~iRl~ss~--~~~~~W~~p~~~-ti~~~~~n~sqVvvA~----~~~~l~y~ 514 (1096)
T KOG1897|consen 444 DPGFSTDEQTIFCSTI-NGNQLVQV-TSNSIRLVSSA--GLRSEWRPPGKI-TIGVVSANASQVVVAG----GGLALFYL 514 (1096)
T ss_pred cccccccCceEEEEcc-CCceEEEE-ecccEEEEcch--hhhhcccCCCce-EEEEEeecceEEEEec----CccEEEEE
Confidence 2222233333333322 22222222 22456666543 233334434443 3333334444555554 25666666
Q ss_pred eCCCCceeeEeccccCCceeEEEEeCCC------CEEEEEECCCcEEE-EECCCCeeeEEEecCCC--CCCcceEEEcCC
Q 001190 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQ------NHFLAVGEDSQIKF-WDMDNVNILTSTDAEGG--LPNLPRLRFSKE 640 (1128)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~s~dg~i~i-wd~~~~~~~~~~~~~~~--~~~v~~v~~sp~ 640 (1128)
++..+.+...........+.|+.++|-+ +.++.|..+..+.+ .-..+...+........ ...|.-..+-.|
T Consensus 515 ~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 515 EIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred EeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 7766654333333333468888888642 26677765544443 33444444433322221 223444455567
Q ss_pred CCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecc------cCCCCCccc
Q 001190 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER------SSPVRPSPI 714 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~------~~~~~~~~~ 714 (1128)
..+|.++..||.+.-+.+....-.....+..... ..|+.--.|+..++..+...+.....+-. ..++. ...
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG--t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls-~ke 671 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG--TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLS-LKE 671 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccccccC--CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccc-hHH
Confidence 8899999999998876655442222221111111 11222223332222211111111111100 00000 000
Q ss_pred ccCCCCCCCCCC-CCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeec
Q 001190 715 INGVDPTSRSMD-KPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1128)
Q Consensus 715 ~~~~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 793 (1128)
+...+.-.++.. ..++.+ ..+.+++..++... .....++| -......+++.+....+.+.+.......=
T Consensus 672 v~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iq---kl~irtvp----l~~~prrI~~q~~sl~~~v~s~r~e~~~~-- 741 (1096)
T KOG1897|consen 672 VNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQ---KLHIRTVP----LGESPRRICYQESSLTFGVLSNRIESSAE-- 741 (1096)
T ss_pred hhhhcccccccCCceEEEe-cCCceEEEEecchh---hcceeeec----CCCChhheEecccceEEEEEecccccchh--
Confidence 011111111111 122222 22555555554322 22222222 12344566666644444443332111100
Q ss_pred cccCCCCCCceeeeeccceeccCCCccccc-cccCCCCCCCeeEEEeccC-CCeEEEEe-----------CCeEEEEECC
Q 001190 794 HRNEQNPSGKATASAVPQHWLPSSGLLMAN-DVAGVNLEEAVPCIALSKN-DSYVMSAT-----------GGKISLFNMM 860 (1128)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~d-g~~la~~~-----------dg~i~vwd~~ 860 (1128)
..+.......++++|..+-+.+.. .+...+....+.++.|..| +.++++|. .|.|.||...
T Consensus 742 ------~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~ 815 (1096)
T KOG1897|consen 742 ------YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE 815 (1096)
T ss_pred ------hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe
Confidence 001111222344555555443221 1111112233555568877 77887773 1678888887
Q ss_pred CceEEEEeeCC--CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCc
Q 001190 861 TFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 938 (1128)
Q Consensus 861 ~~~~~~~~~~~--~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~ 938 (1128)
.+..++....+ .+.+.++..- +|++||. -+..|++|++.+.+.++.-..|..++..+...-.|..++.|.-=+.
T Consensus 816 e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 816 ELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred cCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence 74443333222 3345554433 6777764 4678999999999888887889999999999999999999988887
Q ss_pred EEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecC
Q 001190 939 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1128)
Q Consensus 939 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~ 992 (1128)
+.+-..+..+-. + ......-.+.+.+.+.+-.+..++.+-..+.+.+....
T Consensus 892 itll~y~~~eg~--f-~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 892 ITLLQYKGDEGN--F-EEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEEEEEeccCCc--e-EEeehhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence 777665543311 1 11122222367778888888777777666666665444
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.74 E-value=5.8e-06 Score=94.07 Aligned_cols=309 Identities=9% Similarity=0.039 Sum_probs=168.9
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCC----------eE-EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH----------WC-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~----------~i-~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
..+++++.+|.+.-+|.++++..+....... .+ ..+.. ++..++.++ .++.++.+|..+|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~----~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS----EKGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc----CCCEEEEEECCCCCCc
Confidence 4666677777777777777777666544321 00 01111 344555554 3788999999999988
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC--CCCEEEEEEcCCcEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK--EGNLLAVTTADNGFKI 655 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp--~~~~l~~~~~dg~i~i 655 (1128)
.+...... ......+ .+..++.++.+|.|+-+|.++|+.+.............. .-+| .+..++.++.+|.+..
T Consensus 144 W~~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~v~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 144 WQTKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPATAFGGAIVGGDNGRVSA 219 (394)
T ss_pred ccccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCEEECCEEEEEcCCCEEEE
Confidence 87765432 1111122 245777888899999999999999887764321000000 0112 2335677778888888
Q ss_pred EEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCC
Q 001190 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVT 735 (1128)
Q Consensus 656 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 735 (1128)
+|..++....+..... +.+..
T Consensus 220 ~d~~~G~~~W~~~~~~---------------~~~~~-------------------------------------------- 240 (394)
T PRK11138 220 VLMEQGQLIWQQRISQ---------------PTGAT-------------------------------------------- 240 (394)
T ss_pred EEccCChhhheecccc---------------CCCcc--------------------------------------------
Confidence 8888774322110000 00000
Q ss_pred CCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceecc
Q 001190 736 DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 815 (1128)
Q Consensus 736 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1128)
..-++++. ...++ + .+..+++++.+|.+..+|...++ .+|..
T Consensus 241 ~~~~~~~~-------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~-------------~~W~~ 282 (394)
T PRK11138 241 EIDRLVDV-------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ-------------IVWKR 282 (394)
T ss_pred chhccccc-------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC-------------EEEee
Confidence 00000000 00010 1 12345555666666666543221 13332
Q ss_pred CCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCC-CCeeEEEEcCCCCCEEEEEeCC
Q 001190 816 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTED 894 (1128)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~lasg~~d 894 (1128)
..+ . ...+.. .++..++...+|.+..+|..+|+.+....... ....+..+. + ..|+.++.|
T Consensus 283 ~~~-----------~---~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~ 344 (394)
T PRK11138 283 EYG-----------S---VNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSE 344 (394)
T ss_pred cCC-----------C---ccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeCC
Confidence 111 0 111222 23344444448999999999998765543211 122333332 3 456778999
Q ss_pred CcEEEEecccceeeecccccccCeeE-EEEcCCCCEEEEEcCCCcEEEEEC
Q 001190 895 STIHIYNVRVDEVKSKLKGHQKRITG-LAFSTSLNILVSSGADAQLCVWSI 944 (1128)
Q Consensus 895 g~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~~~Dg~i~iwd~ 944 (1128)
|.|+..|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 99999999999988776543333332 222 2446777899999887764
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=1.1e-05 Score=83.34 Aligned_cols=211 Identities=16% Similarity=0.166 Sum_probs=148.0
Q ss_pred CCCeeEEEecc-CCCeEEEEe-CCe-EEEEECCCceEEEEeeCCCCC--eeEEEEcCCCCCEEEEEeC-----CCcEEEE
Q 001190 831 EEAVPCIALSK-NDSYVMSAT-GGK-ISLFNMMTFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGTE-----DSTIHIY 900 (1128)
Q Consensus 831 ~~~v~~~~~s~-dg~~la~~~-dg~-i~vwd~~~~~~~~~~~~~~~~--v~~l~~s~~d~~~lasg~~-----dg~v~iw 900 (1128)
+.....++.+| ++..++.+. -|+ ..+||..+++....+....+. .-.-.||+ ||++|.+.-. .|.|-||
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEE
Confidence 34455788889 556667776 354 899999999998887655444 23578999 8998887643 4789999
Q ss_pred ecc-cceeeecccccccCeeEEEEcCCCCEEEEEcC------------------CCcEEEEECCCCcccceeEEeecCCC
Q 001190 901 NVR-VDEVKSKLKGHQKRITGLAFSTSLNILVSSGA------------------DAQLCVWSIDTWEKRKSVTIHIPAGK 961 (1128)
Q Consensus 901 d~~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~------------------Dg~i~iwd~~~~~~~~~~~~~~~~~~ 961 (1128)
|.. +.+.+.++..|.-.-..+.+.|||+.|+.+-. +..+..-|..+|+.+....+. ...
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp--~~~ 160 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP--PDL 160 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC--ccc
Confidence 999 66888888877666678889999987776521 234566677788765554332 222
Q ss_pred CCCCccEEEEcCCCCEEEEEe-cC-------eEEEEecCCcccccccccCC----CCCCCeEEEEEeeCCCEEEEEe-cC
Q 001190 962 TPTGDTRVQFNADQVRMLVVH-ET-------QLAIYDASKMERIRQWTPQD----ALSAPISCAVYSCNSQLVFATF-CD 1028 (1128)
Q Consensus 962 ~~~~v~~v~~s~d~~~l~~~~-d~-------~i~v~d~~~~~~~~~~~~~~----~h~~~v~~l~~s~dg~~l~t~~-~d 1028 (1128)
....++.+++.++|..++... .+ -+.+++- ++.+..+.... .-..-+-+|+++.+|.++++.+ .-
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 236799999999999888753 11 1334433 33233322211 1146688999999999887655 78
Q ss_pred CcEEEEecCCCceEEEeC
Q 001190 1029 GNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1029 g~i~vwd~~~~~~~~~~~ 1046 (1128)
+.+.+||..+|+++....
T Consensus 239 g~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CEEEEEECCCCCEeeccc
Confidence 899999999999988776
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.71 E-value=3.1e-07 Score=90.67 Aligned_cols=183 Identities=16% Similarity=0.231 Sum_probs=115.9
Q ss_pred ccEEEEEEecCc--ceEEEeeccceeEeeeccccCC-------------CC-CCceeeeeccceeccCCCc-ccc---cc
Q 001190 765 SKVVRLLYTNSA--VGLLALGSNGVQKLWKWHRNEQ-------------NP-SGKATASAVPQHWLPSSGL-LMA---ND 824 (1128)
Q Consensus 765 ~~i~~l~~s~~g--~~l~~~~~dg~i~lw~~~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~-~~~---~~ 824 (1128)
..|..+.|..++ ..++..+.|.+|++|.+..... .| .|..+...++.+-.+.... .+. ..
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 456666666554 3467778899999999876521 11 1111111111111111100 000 01
Q ss_pred ccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceE---EEEeeCCCC-----CeeEEEEcCCCCCEEEEEeCCCc
Q 001190 825 VAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV---MTTFMSPPP-----ASTFLAFHPQDNNIIAIGTEDST 896 (1128)
Q Consensus 825 ~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~---~~~~~~~~~-----~v~~l~~s~~d~~~lasg~~dg~ 896 (1128)
.....|...+.++.|..|.+.++++.|=.|-+|+++--.. +-.++.|.. -|++..|+|.....+...+..|+
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred eccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 1123488889999999999999999999999998863221 223333433 48899999977888888999999
Q ss_pred EEEEeccccee------eec----------ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q 001190 897 IHIYNVRVDEV------KSK----------LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 948 (1128)
Q Consensus 897 v~iwd~~~~~~------~~~----------l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~ 948 (1128)
|++-|++...+ +.. +.+-...|..+.|+++|+++++-+. -+|+|||+...+
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 99999974311 111 1223356788899999999887765 479999987643
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.71 E-value=1.1e-05 Score=91.89 Aligned_cols=188 Identities=13% Similarity=0.101 Sum_probs=114.0
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCC--CeE-----EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEA--PVY-----SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 538 (1128)
.++.++.++.+.-+| .+|+.+-+...... ... .+.-.+.-++..++.++.+|.+..+|.++++..+......
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 467777788999999 78888765542210 000 0000011123567788899999999999999888776654
Q ss_pred CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCc----eeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 539 ~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
....+..+. ++ .++.+. .++.++.+|..+|+.+..+....... ...... .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~~-~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-DG-LVLVHT----SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-CC-EEEEEC----CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222222 33 444443 37889999999999988776432100 011111 1346777888999999999
Q ss_pred CCCeeeEEEecCCCC--CC---cceEEEcC--CCCEEEEEEcCCcEEEEEcccCc
Q 001190 615 DNVNILTSTDAEGGL--PN---LPRLRFSK--EGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~--~~---v~~v~~sp--~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
.+|+.+......... .. ...+..+| .+..+++++.+|.+..+|..+++
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 999877655321110 00 11111223 34567777778888888887763
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.4e-06 Score=90.91 Aligned_cols=256 Identities=14% Similarity=0.099 Sum_probs=174.2
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
-|.+.|+.|.-+-.. ++.+++.||.++.|.-..-..+. -...+..|-+.|.+++.|-||.++
T Consensus 7 mhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvE----------------fVKhFraHL~~I~sl~~S~dg~L~ 68 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVE----------------FVKHFRAHLGVILSLAVSYDGWLF 68 (558)
T ss_pred cccceeeeEeeehhh--eEEeeecchhhhhcCCCCcccee----------------ehhhhHHHHHHHHhhhccccceeE
Confidence 478888888776553 78999999999999854311110 001266789999999999999999
Q ss_pred EEEeC-CCeEEEEEccCCCcceeceeecccccceeEEEEecC-CCeEEEEEecCCCeEEEEe--cCCCe-EEEecCCCCC
Q 001190 422 GVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE--LSGRK-LFNFEGHEAP 496 (1128)
Q Consensus 422 as~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d-~~~~~l~s~s~d~~i~vWd--~~g~~-~~~~~~h~~~ 496 (1128)
.|++. |..++++|+++-..+.-+ .+..-.+.+..+ .++. -..++.++.-.++.+.|+| .++.+ ...-.-|..+
T Consensus 69 ~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP 146 (558)
T KOG0882|consen 69 RSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP 146 (558)
T ss_pred eeccCcccceeEEEeeccchhhhc-ccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc
Confidence 99887 999999999876544211 122222222211 1221 1112445555678999999 34423 3444569999
Q ss_pred eEEEeccCCCCccEEEEEeccCcEEEEecCC------CCceeee---------cCCCCeEEEEEEcCCCCeEEEeeeccC
Q 001190 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDT------MGSRVDY---------DAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~------~~~~~~~---------~~~~~~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
|..+.+.+. +..+++....|.|.-|..+. ......+ ........++.|+|+|..+...+
T Consensus 147 V~~i~y~qa--~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---- 220 (558)
T KOG0882|consen 147 VKKIRYNQA--GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---- 220 (558)
T ss_pred eEEEEeecc--ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC----
Confidence 999998774 45788998999999998763 1111111 11233578999999999999887
Q ss_pred CCceEEEEeCCCCceeeEecc--------------------------------ccCCceeEEEEeCCCCEEEEEECCCcE
Q 001190 562 GDSFLVEWNESEGTIKRTYAG--------------------------------FRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~--------------------------------~~~~~v~~~~~~~~~~~l~~~s~dg~i 609 (1128)
.|..|++++..+|++++.+.. +.......+.|...+++|+.++-= .|
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gi 299 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GI 299 (558)
T ss_pred cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eE
Confidence 489999999999887765432 111123346788889999988764 37
Q ss_pred EEEECCCCeeeEEEe
Q 001190 610 KFWDMDNVNILTSTD 624 (1128)
Q Consensus 610 ~iwd~~~~~~~~~~~ 624 (1128)
++.++.++..+..+.
T Consensus 300 kvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 300 KVINLDTNTVVRILG 314 (558)
T ss_pred EEEEeecCeEEEEec
Confidence 889998888777653
No 303
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.66 E-value=3.5e-07 Score=94.41 Aligned_cols=159 Identities=12% Similarity=0.041 Sum_probs=108.1
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc-cceeEEeecCCCCCCCccEEEEcCCCCEEEEE----ecCeEEEEec
Q 001190 917 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEK-RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV----HETQLAIYDA 991 (1128)
Q Consensus 917 ~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~----~d~~i~v~d~ 991 (1128)
....+..++.++++|.+..++...++++..... .+........ ...+.+.|..+.....++ +...+.+|..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc----cCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 344556677888888887777766776655433 1111111111 344566666666665553 3456667776
Q ss_pred CCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEec
Q 001190 992 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1071 (1128)
Q Consensus 992 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1071 (1128)
..+..... -+|-+-++.++||||+++|+++..|..|+|-....--.+..+- -+|..+|..++.-+
T Consensus 140 ~~~~~~~~----lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-----------lGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 140 DSGRCEPI----LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-----------LGHKEFVSTISLTD 204 (390)
T ss_pred cccCcchh----hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc-----------cccHhheeeeeecc
Confidence 66433222 2348999999999999999999999999998877654444333 25666777777665
Q ss_pred CCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1072 LEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1072 ~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
++.|++||.|++|++||..+|..
T Consensus 205 --~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 205 --NYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred --CceeeecCCCCcEEEEecccCCc
Confidence 57799999999999999999875
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.62 E-value=5.2e-06 Score=80.80 Aligned_cols=177 Identities=6% Similarity=-0.042 Sum_probs=123.9
Q ss_pred EEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCC
Q 001190 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439 (1128)
Q Consensus 360 la~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~ 439 (1128)
+..++.|.++++.+++.+..... +....-.+.++++|+|++++++.+....|..|.++...
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~-------------------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s 191 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFA-------------------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES 191 (344)
T ss_pred eeeccCCcceeEEEEecCcccce-------------------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc
Confidence 45567899999998876543211 11111238899999999999999999999999998654
Q ss_pred cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE-----EEecCCCCCeEEEeccCCCCccEEEE
Q 001190 440 DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-----FNFEGHEAPVYSICPHHKENIQFIFS 513 (1128)
Q Consensus 440 ~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s 513 (1128)
...........++.-.+..|+.... .+|++..||++.||| ...... ..-..|.+.+..+.|++.+-..+|+.
T Consensus 192 ey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~ 269 (344)
T KOG4532|consen 192 EYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI 269 (344)
T ss_pred ceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE
Confidence 4332223344555667888998887 799999999999999 433322 12245899999999987665567777
Q ss_pred EeccCcEEEEecCCCCceeeecCCC--------CeEEEEEEcCCCCeEEEee
Q 001190 514 TAIDGKIKAWLYDTMGSRVDYDAPG--------HWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 514 ~~~dg~i~~wd~~~~~~~~~~~~~~--------~~i~~~~~s~~g~~l~~~~ 557 (1128)
.-.-+.+.+.|+++......+.... ..|....|+.++..+.+..
T Consensus 270 sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 270 SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 7777899999998876554333222 2366777777776666554
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.61 E-value=3e-05 Score=81.89 Aligned_cols=218 Identities=17% Similarity=0.165 Sum_probs=138.6
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEe-cCCCeEEEEEecCCCeEEEEe-cCCCeE
Q 001190 411 RVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA-YPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1128)
Q Consensus 411 ~l~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs-~d~~~~~l~s~s~d~~i~vWd-~~g~~~ 487 (1128)
+++|.+ +|.++++--..+.|..|+..+++... +... . ...+++. +++. ++.+..+ .+.++| .+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~-~-~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLP-G-PNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESS-S-EEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecC-C-CceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 568888 67777776678999999998875322 1111 1 6777887 6765 4444444 445559 666543
Q ss_pred EEecC-----CCCCeEEEeccCCCCccEEEEEecc--------CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEE
Q 001190 488 FNFEG-----HEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 488 ~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 554 (1128)
..... .....+.+++.+ +|.+.++.... |.|..++.+ .........-...+.++|+||++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 32221 234578888865 66666665433 446556554 33333333345678999999999887
Q ss_pred EeeeccCCCceEEEEeCCCCce----eeEeccccC--CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC
Q 001190 555 SCGTSKDGDSFLVEWNESEGTI----KRTYAGFRK--KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG 628 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~ 628 (1128)
.+.. ..+.|..+++..... ...+..... .....+++..+|+..++....+.|.+++.+ |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6543 477888888853221 122221111 136679999999888888889999999987 888888877633
Q ss_pred CCCcceEEEc-CCCCEEEEEE
Q 001190 629 LPNLPRLRFS-KEGNLLAVTT 648 (1128)
Q Consensus 629 ~~~v~~v~~s-p~~~~l~~~~ 648 (1128)
.+++++|. ++.+.|.+.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 68899994 6766666554
No 306
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.60 E-value=5.7e-06 Score=80.53 Aligned_cols=223 Identities=10% Similarity=0.002 Sum_probs=147.2
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAP 496 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~ 496 (1128)
...+||.|+..|...+|...+.+.... ....|...|+-+.=..|.+. -+..++.|.++++.+.++....... |...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~~-h~~~ 158 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFAV-HNQN 158 (344)
T ss_pred cccEEEeccccceeeeecccCccccee--eecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCccccee-eccc
Confidence 456899999999999999987654322 23344444433322223332 4667888999999995554432222 3332
Q ss_pred --eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee---ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 497 --VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 497 --v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
+.++++++ +++++++.+....|..|.++....... .......-.+..|+.....++++. +|+.+.|||+
T Consensus 159 ~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~----Qdg~~~I~DV 232 (344)
T KOG4532|consen 159 LTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF----QDGTCAIYDV 232 (344)
T ss_pred cceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe----cCCcEEEEEe
Confidence 66677654 778999999999999999877554332 222333456788999888888887 6999999999
Q ss_pred CCCceee----EeccccCCceeEEEEeCCC--CEEEEEECCCcEEEEECCCCeeeEEEecCCCC------CCcceEEEcC
Q 001190 572 SEGTIKR----TYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL------PNLPRLRFSK 639 (1128)
Q Consensus 572 ~~~~~~~----~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~sp 639 (1128)
+...... .-+.|+++.+..+.|++.| ..|+..-.-+.+.+.|++++...+.+...... ..|....|+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 8755332 3345666789999999865 34555555678999999998776665433221 2355666666
Q ss_pred CCCEEEEEEc
Q 001190 640 EGNLLAVTTA 649 (1128)
Q Consensus 640 ~~~~l~~~~~ 649 (1128)
++..+.+.+.
T Consensus 313 ~n~s~~v~~e 322 (344)
T KOG4532|consen 313 ENESNDVKNE 322 (344)
T ss_pred CCcccccccc
Confidence 6655555443
No 307
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.58 E-value=0.00021 Score=69.66 Aligned_cols=137 Identities=9% Similarity=-0.054 Sum_probs=88.6
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCce
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 588 (1128)
.+++.|+..+.+.--|..++...++..... .+.+-+.- -|++++.++. .+.+++.+..+|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 355555666666656655555554433222 23222221 4667888875 78899999999988887775543 22
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEE
Q 001190 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1128)
Q Consensus 589 ~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 654 (1128)
......+++..+.+|+.|+..+..|..+...+...+..+. ...+-++.|-...|..+...|.+.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEE
Confidence 2345678899999999999999999999999988776554 234455666333444444455543
No 308
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.57 E-value=7.6e-07 Score=100.76 Aligned_cols=181 Identities=14% Similarity=0.185 Sum_probs=136.8
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeE
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 920 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 920 (1128)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445666666 677889999999888777655556766666 7799999999999999999999999999999999976
Q ss_pred EEEcCCCCEEEEEcC---------CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC--CCEEEEEecCeEEEE
Q 001190 921 LAFSTSLNILVSSGA---------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD--QVRMLVVHETQLAIY 989 (1128)
Q Consensus 921 l~~s~d~~~l~s~~~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--~~~l~~~~d~~i~v~ 989 (1128)
+.. .|+.|+++|. |..|+|||+..-+.+..+.+. ....-+.|.|. .+.++++..|...+-
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-------~~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-------YGPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-------cCchhhhhcccccceEEEEecccceeec
Confidence 555 6889999875 567899999987766555444 22345677775 334444568999998
Q ss_pred ecCCccc--ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEe
Q 001190 990 DASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 990 d~~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
|..+... ......+.. +..+..+.+|++|..++.|..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence 8432221 111222211 56699999999999999999999999998
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=7.7e-06 Score=84.41 Aligned_cols=248 Identities=12% Similarity=0.132 Sum_probs=146.0
Q ss_pred eccCCCcceEEEEEccCCC-EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 401 IFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
++.+|...|..++|||..+ ++..++.+..|+|.|+++...+. .+..| ..+++++|.-|..+ +++.|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5888999999999999887 77889999999999999976655 35556 78999999999877 8999999999999
Q ss_pred Ee--cCCCeEEEecC--CCCCeEEEeccCC----CCccEEEEEeccCcEEEEecCCCCcee--eecCC-CCeEEEEEEcC
Q 001190 480 WE--LSGRKLFNFEG--HEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAP-GHWCTTMLYSA 548 (1128)
Q Consensus 480 Wd--~~g~~~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~-~~~i~~~~~s~ 548 (1128)
+| .....+..+.+ ...+|..++..+. ..+.+|+....+ ...|++....... .+... .+...++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 33333444433 2334554442211 122344444332 4456553322222 22222 33555666666
Q ss_pred CCCeEEEeeeccCCCceEE----EEeCCCCceeeEec-cc---cCCc---eeEEEEeCCCCEEEE-EECCCcEEEEECCC
Q 001190 549 DGSRLFSCGTSKDGDSFLV----EWNESEGTIKRTYA-GF---RKKS---NGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (1128)
Q Consensus 549 ~g~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~-~~---~~~~---v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~ 616 (1128)
-.+.++........-..++ --|-.+|..+..-+ ++ .... -..+.-.++.++++. +...+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 5566655543211111111 11222333222111 11 0000 111222345566655 44678899999999
Q ss_pred CeeeEEEecCCCCCCcceEEEcC-CC-CEEEEEEcCCcEEEEEcc
Q 001190 617 VNILTSTDAEGGLPNLPRLRFSK-EG-NLLAVTTADNGFKILANA 659 (1128)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~sp-~~-~~l~~~~~dg~i~iw~~~ 659 (1128)
++.++.+.... +|..+.... ++ .+|++-. |..++|+..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999987652 566665543 33 3455444 6678887643
No 310
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.1e-06 Score=89.90 Aligned_cols=173 Identities=13% Similarity=0.185 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCC--------cCHHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHH
Q 001190 5 SRELVFLILQFLEEEKFKESVHKLEKESGFF--------FNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEI 76 (1128)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1128)
+.-+.|+|+.||..+||.++|..|-++|.+. .++..++++|+.|+...|+.-.+.-+..-. .....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHH
Confidence 4457899999999999999999999999975 237789999999999999888765311111 1122378999
Q ss_pred HHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCCchHHHHHHHH--HHHhhcccC
Q 001190 77 RKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLI--ELKKLIEAN 154 (1128)
Q Consensus 77 ~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~--~l~~~~~~~ 154 (1128)
+.|.|+||+..+++.+|+.+.++.|.|....++++++....++.++.......+... ....|=..+. .++.+..-
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sky~~l--~~~~rw~~l~~lF~s~a~~l- 270 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSKYLNL--LTADRWSVLADLFLSEALKL- 270 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCcccccCc--ccHHHHHHHHHHhhHHHHHH-
Confidence 999999999999999999999999999988889999999999988755443332211 2233333333 23333222
Q ss_pred cccccccCCCCCCh-HHHHHHHHHHHHHH-HhhCCCCC
Q 001190 155 PLFRDKLAFPTLKS-SRLRTLINQSLNWQ-HQLCKNPR 190 (1128)
Q Consensus 155 ~~~~~~~~~~~~p~-~rL~~ll~qa~~~q-~~~~~~~~ 190 (1128)
| .+|. .+|..+|+-.+..| .-.|.++.
T Consensus 271 --------~-~i~~~~~L~~~l~~GLsalKTp~c~~~~ 299 (389)
T KOG0396|consen 271 --------F-GIPINPALTIYLQAGLSALKTPRCLNDE 299 (389)
T ss_pred --------h-CCCCCcHHHHHHHhhhhhcccccccccc
Confidence 1 1222 25888888777777 44566553
No 311
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.51 E-value=0.00034 Score=68.29 Aligned_cols=116 Identities=8% Similarity=0.082 Sum_probs=81.8
Q ss_pred EeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEE
Q 001190 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1128)
Q Consensus 352 fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~ 431 (1128)
.-+|.+.+++.||..+.+.--|..+|+.....- -...|-+-+.- -|++++.|+..|.+.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 345667789999999999999999998764311 12233332222 477899999999999
Q ss_pred EEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 432 vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
+.+.++|+.+..+..+.. --......+++. ++..|+.|++...-| .+..++.+.+-.
T Consensus 77 fl~~~tGs~~w~f~~~~~---vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcg 134 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILET---VKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCG 134 (354)
T ss_pred EEEecchhheeeeeehhh---hccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccC
Confidence 999999977654332221 111233456788 899999999999999 888888776543
No 312
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.50 E-value=0.0063 Score=71.13 Aligned_cols=621 Identities=12% Similarity=0.090 Sum_probs=308.2
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEcc-CCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
+..-..+++|.++ ..|..+|.+...-+. +++.......+ ...-|...-..|+..-++| .|.+|+
T Consensus 260 ~~~~~v~~~~~~y-Ll~d~~G~Lf~l~l~~~~e~~s~~~lk-------------ve~lge~siassi~~L~ng-~lFvGS 324 (1096)
T KOG1897|consen 260 VCYGRVDLQGSRY-LLGDEDGMLFKLLLSHTGETVSGLDLK-------------VEYLGETSIASSINYLDNG-VLFVGS 324 (1096)
T ss_pred EEcccccCCccEE-EEecCCCcEEEEEeecccccccceEEE-------------EEecCCcchhhhhhcccCc-eEEEec
Confidence 3444567788755 456778877655544 55543321111 1234455566677776666 666787
Q ss_pred CCCeEEEEEccCCCcc----eeceeecccccceeEEEEecC---CCeEEEEEec---CCCeEEEEe--cCCCe--EEEec
Q 001190 426 TKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG---DDKLIKVWE--LSGRK--LFNFE 491 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~fs~d---~~~~~l~s~s---~d~~i~vWd--~~g~~--~~~~~ 491 (1128)
.-|.=++-.+.+.... ....++ ..-++|.+++.... |+. -++||+ .||++++.. ..=.. ...+.
T Consensus 325 ~~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~ 402 (1096)
T KOG1897|consen 325 RFGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELASIDLP 402 (1096)
T ss_pred cCCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeEeecC
Confidence 7665455555443221 111112 23458888887543 222 355544 478999987 22122 23444
Q ss_pred CCCCCeEEEe--ccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEc-CCCCeEEEeeeccCCCceEEE
Q 001190 492 GHEAPVYSIC--PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 492 ~h~~~v~~~~--~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
| -..++.+. +.++.|. +|+.+-.+ .-++..+...-......+-......+..| -.|+.|+=.. ...|++
T Consensus 403 G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~~iRl 474 (1096)
T KOG1897|consen 403 G-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SNSIRL 474 (1096)
T ss_pred C-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cccEEE
Confidence 5 23466666 5555454 55544333 23344443221111111111111122221 1333333222 345677
Q ss_pred EeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC--C----C
Q 001190 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE--G----N 642 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~--~----~ 642 (1128)
++-. ..+..+....+ +++...+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +
T Consensus 475 ~ss~--~~~~~W~~p~~--~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~ 549 (1096)
T KOG1897|consen 475 VSSA--GLRSEWRPPGK--ITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSR 549 (1096)
T ss_pred Ecch--hhhhcccCCCc--eEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcce
Confidence 7644 23334443332 3444444555678888888888777777665 333333333457899999973 2 2
Q ss_pred EEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCC
Q 001190 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (1128)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1128)
++++|..+..+.+.-. .||+..+....-+ .+.-+...+ -..+
T Consensus 550 ~~aVG~Ws~~~~~l~~---------------------------~pd~~~~~~~~l~--------~~~iPRSIl---~~~~ 591 (1096)
T KOG1897|consen 550 LLAVGLWSDISMILTF---------------------------LPDLILITHEQLS--------GEIIPRSIL---LTTF 591 (1096)
T ss_pred EEEEEeecceEEEEEE---------------------------CCCcceeeeeccC--------CCccchhee---eEEe
Confidence 6777776555444322 2222221100000 000000000 0011
Q ss_pred CCCCCCcccCCCCCCCCcceeEEEe--eCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCC
Q 001190 723 RSMDKPRTVDDVTDKPKPWQLAEIV--DSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 800 (1128)
Q Consensus 723 ~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~ 800 (1128)
..|..++.++..||.+..|.+.... .... +... -...++.=-.|+..++.-+.+.+|.-..+|..
T Consensus 592 e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~-Kk~~-----lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~------- 658 (1096)
T KOG1897|consen 592 EGDIHYLLVALGDGALLYFVLDINTGQLSDR-KKVT-----LGTQPISLRTFSSKSRTAVFALSDRPTVIYSS------- 658 (1096)
T ss_pred eccceEEEEEcCCceEEEEEEEcccceEccc-cccc-----cCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-------
Confidence 2235566777777777666554311 1111 1000 02233444455555555555555544444421
Q ss_pred CCceeeeeccceeccCCCccccccccCCCCCCCeeE-EEeccC--CCeEEEEeCCeEEEEECCCceE--EEEeeCCCCCe
Q 001190 801 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC-IALSKN--DSYVMSATGGKISLFNMMTFKV--MTTFMSPPPAS 875 (1128)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~d--g~~la~~~dg~i~vwd~~~~~~--~~~~~~~~~~v 875 (1128)
++++...++. -..+.. +.|+.+ ...++++..+.+++..++.-+. ++++.- ....
T Consensus 659 ----------------n~kLv~spls----~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~p 717 (1096)
T KOG1897|consen 659 ----------------NGKLVYSPLS----LKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GESP 717 (1096)
T ss_pred ----------------CCcEEEeccc----hHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCCh
Confidence 1111111110 011111 223322 3467777777777776654332 233321 2234
Q ss_pred eEEEEcCCCCCEEEEEeC-----------C---CcEEEEecccceeeecccc----cccCeeEEEEcCC-CCEEEEEc--
Q 001190 876 TFLAFHPQDNNIIAIGTE-----------D---STIHIYNVRVDEVKSKLKG----HQKRITGLAFSTS-LNILVSSG-- 934 (1128)
Q Consensus 876 ~~l~~s~~d~~~lasg~~-----------d---g~v~iwd~~~~~~~~~l~~----h~~~V~~l~~s~d-~~~l~s~~-- 934 (1128)
..+++.+ ...++++.+. . ..++++|-++-+.+...+- -.-.|.++.|..| +.+++.|.
T Consensus 718 rrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~ 796 (1096)
T KOG1897|consen 718 RRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGL 796 (1096)
T ss_pred hheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEe
Confidence 5556654 3333333321 1 1366666666554432211 1124556668887 66777664
Q ss_pred --------CCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCC
Q 001190 935 --------ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDAL 1006 (1128)
Q Consensus 935 --------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h 1006 (1128)
..|.|.++.+..++.++........ + ...+...-...++++-+..|++|++.+.+.++.- ..|
T Consensus 797 v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~----G--av~aL~~fngkllA~In~~vrLye~t~~~eLr~e---~~~ 867 (1096)
T KOG1897|consen 797 VYPDENEPVNGRIIVFEFEELNSLELVAETVVK----G--AVYALVEFNGKLLAGINQSVRLYEWTTERELRIE---CNI 867 (1096)
T ss_pred eccCCCCcccceEEEEEEecCCceeeeeeeeec----c--ceeehhhhCCeEEEecCcEEEEEEccccceehhh---hcc
Confidence 2477888888774433333222211 1 1223333344556666789999999988655443 334
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEe--cCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCC
Q 001190 1007 SAPISCAVYSCNSQLVFATFCDGNIGVFD--ADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG 1084 (1128)
Q Consensus 1007 ~~~v~~l~~s~dg~~l~t~~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg 1084 (1128)
..++..+...-.|..+++|.--++|.+-. ...|...-.-+ .=++-+.+++.+-. +..++-+-.+|
T Consensus 868 ~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-----------D~~p~Wmtaveil~--~d~ylgae~~g 934 (1096)
T KOG1897|consen 868 SNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-----------DYNPNWMTAVEILD--DDTYLGAENSG 934 (1096)
T ss_pred cCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh-----------hhCccceeeEEEec--CceEEeecccc
Confidence 78899999999999999999888877654 44444443333 12334556666543 56777778888
Q ss_pred cEEEEcCC
Q 001190 1085 SVKVMEPS 1092 (1128)
Q Consensus 1085 ~i~iWd~~ 1092 (1128)
.+.+-...
T Consensus 935 Nlf~v~~d 942 (1096)
T KOG1897|consen 935 NLFTVRKD 942 (1096)
T ss_pred cEEEEEec
Confidence 88776554
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.50 E-value=2.9e-05 Score=81.79 Aligned_cols=220 Identities=15% Similarity=0.099 Sum_probs=138.2
Q ss_pred CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCC
Q 001190 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK 505 (1128)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~ 505 (1128)
+|+|..||..+|+.+-... +..-.....+. ..+++. .+++++.++.+..|| .+|+.+..+.. .+++.... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~---~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-LGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP---V 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE---E
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee---e
Confidence 6789999998888765431 21101112111 333455 567778899999999 79998877764 22221111 1
Q ss_pred CCccEEEEEeccCcEEEEecCCCCceeee-cCCC---CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec
Q 001190 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPG---HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1128)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~---~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 581 (1128)
.++..++.++.++.+..+|..+++..... .... ..........++..++++.. ++.|..+|..+|+.+..+.
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 13346777778889999999999888874 3221 11122223333777777653 7899999999999988887
Q ss_pred cccCCc---------eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCc
Q 001190 582 GFRKKS---------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1128)
Q Consensus 582 ~~~~~~---------v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~ 652 (1128)
...... ...-....++ .++.++.++.+..+|..+++.+.... .. .+.. ....++..|++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCCE
Confidence 644211 1111222233 78888888864444999999765333 22 1222 14567788888889999
Q ss_pred EEEEEcccCccc
Q 001190 653 FKILANAIGLRS 664 (1128)
Q Consensus 653 i~iw~~~~~~~~ 664 (1128)
|..||+.+++..
T Consensus 224 l~~~d~~tG~~~ 235 (238)
T PF13360_consen 224 LYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCCEE
Confidence 999999998543
No 314
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.47 E-value=7.6e-07 Score=98.09 Aligned_cols=222 Identities=14% Similarity=0.174 Sum_probs=146.3
Q ss_pred cccCCCCCcceE-Eee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVA-VSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~-~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|.+.......+ ..+ +|..+|+.+-|+|..+-++|+++.|..|..||+.+..... -. ...
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~----ys--------------~~~ 156 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF----YS--------------TSS 156 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce----ee--------------eec
Confidence 888766554433 334 4999999999999999899999999999999998754322 11 112
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--c
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~ 482 (1128)
-...-..|+|+-....+.+.+..+.|.+||...|..... .+++|...|+.++|..--.. .+.+++.|++|+.|| .
T Consensus 157 w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~--s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 157 WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC--SLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ccccCceeeecccCcchhhhccCCceEEEeccCCCcceE--EecccceeeehHHHhhhhhh-hhcccCCCCceeeecccc
Confidence 234567789987555555556777899999987765433 67889999999999764322 588999999999999 2
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEE---------ecC-CCCceeeecCCCCeEEEEEEcCCC--
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW---------LYD-TMGSRVDYDAPGHWCTTMLYSADG-- 550 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w---------d~~-~~~~~~~~~~~~~~i~~~~~s~~g-- 550 (1128)
+-+.-........+|+--++.|-++|.++.---.+..+.++ +.. ....+..+.+|...|....|-..+
T Consensus 234 St~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~ 313 (1081)
T KOG0309|consen 234 STTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKEC 313 (1081)
T ss_pred cccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccc
Confidence 22222233334556666666666665444322222333333 322 234556778887766555443222
Q ss_pred --------CeEEEeeeccCCCceEEEEeCCC
Q 001190 551 --------SRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 551 --------~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
-.|++-+ .|..+++|.+..
T Consensus 314 ~~d~d~rdfQLVTWS----kD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 314 DGDYDSRDFQLVTWS----KDQTLRLWPIDS 340 (1081)
T ss_pred cCCCCccceeEEEee----cCCceEeeeccH
Confidence 2567766 488999998764
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.46 E-value=4.8e-06 Score=80.76 Aligned_cols=207 Identities=14% Similarity=0.189 Sum_probs=125.8
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeC
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 426 (1128)
|+.+.|+-+- .|+++-.++.+......++.+... |+...... +...+..|+.+-.+-+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcC--ceeeeeccCCCCCcccccccCCceEecCC
Confidence 7777777664 578888888887777666555431 22222212 22234456555555556666888999999
Q ss_pred CCeEEEEEccCCCcceeceeec-ccccceeEEEEecCCCeEEEEEecCCCe------EEEEe-cCCCeEEEecCCCCCeE
Q 001190 427 KHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKL------IKVWE-LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~fs~d~~~~~l~s~s~d~~------i~vWd-~~g~~~~~~~~h~~~v~ 498 (1128)
||.+.+.+.+.- ++....+. .|.+ --+.+....+. .+.++ .=|+ .+.|+ ..-+.+..-......|.
T Consensus 110 dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s~-~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~ 183 (319)
T KOG4714|consen 110 DGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILSG-GCGNWNAQDNFYANTLDPIKTLIPSKKALDAVT 183 (319)
T ss_pred CceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEecC-CcceEeeccceeeecccccccccccccccccch
Confidence 999999998762 22111111 1222 11222333444 33332 2333 33444 11111111111223489
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCcee-eecCCCCeEEEEEEcC-CCCeEEEeeeccCCCceEEEEeCCC
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~-~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
+++-+|.. .+.+++|+.||.+-+||.+...... .+..|..++..+-|.| ++..|++++ ++|.+..||..+
T Consensus 184 ~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s----edGslw~wdas~ 255 (319)
T KOG4714|consen 184 ALCSHPAQ-QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS----EDGSLWHWDAST 255 (319)
T ss_pred hhhCCccc-ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec----CCCcEEEEcCCC
Confidence 99988875 4788999999999999998764433 4566788999999998 567888887 589999999765
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=3e-05 Score=91.49 Aligned_cols=274 Identities=8% Similarity=0.092 Sum_probs=160.7
Q ss_pred cccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCC
Q 001190 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 843 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 843 (1128)
...|.++.|..++..++.+...|.|.+-|....... +.+ .-...|.+++||||+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-------------------------ivg-~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-------------------------IVG-NVDNGISAASWSPDE 121 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-------------------------eee-eccCceEEEeecCCC
Confidence 468999999999999999999999888754322110 111 145679999999999
Q ss_pred CeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee-----e------eccc
Q 001190 844 SYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-----K------SKLK 912 (1128)
Q Consensus 844 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-----~------~~l~ 912 (1128)
++++..+.+..-++...+..++....-+. .-.+ .++ .+.+++...=.-+....|+. + ....
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk-~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~ 193 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSK-FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE 193 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhcccccc------cccc-ccc-cceecccccceeeecchhhhcccccccccccccchh
Confidence 99999985444444444444443322111 0111 122 22333222111222122210 1 1011
Q ss_pred ccccCeeEEEEcCCCCEEEEEc----CC-CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE----ec
Q 001190 913 GHQKRITGLAFSTSLNILVSSG----AD-AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV----HE 983 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~~----~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~----~d 983 (1128)
.| +.=+.+.|--||+++|+.. .+ +.|+|||-+ |.....- ......-.+++|-|.|.++++. ++
T Consensus 194 ~~-~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s------e~~~~l~~~LsWkPsgs~iA~iq~~~sd 265 (1265)
T KOG1920|consen 194 QD-DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS------EPVEGLQHSLSWKPSGSLIAAIQCKTSD 265 (1265)
T ss_pred hc-cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc------CcccccccceeecCCCCeEeeeeecCCC
Confidence 12 3345799999999998732 23 789999987 3321111 1111344679999999999984 46
Q ss_pred CeEEEEecCCcccccccccCCC-CCCCeEEEEEeeCCCEEEE---EecCCcEEEEecCCCceEEEeCCCCCCCCcccCCC
Q 001190 984 TQLAIYDASKMERIRQWTPQDA-LSAPISCAVYSCNSQLVFA---TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGS 1059 (1128)
Q Consensus 984 ~~i~v~d~~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~t---~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1128)
+.|.+|.-+ |-.-..+..... ...+|..++|+.++..|++ ......|++|-+.+..-..+.... ..
T Consensus 266 ~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~---------~~ 335 (1265)
T KOG1920|consen 266 SDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ---------FS 335 (1265)
T ss_pred CcEEEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe---------cc
Confidence 779888854 322222221111 1344999999999999997 444445999999886543332210 11
Q ss_pred CccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1060 QTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1060 ~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
... -+.|+|..+..+..-..+|.+.+.++.
T Consensus 336 ~~~---~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 336 QKA---LLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred ccc---cccccCCCceeEEEEecCCcEEEEEEE
Confidence 111 177888767777766677777666554
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.1e-06 Score=84.26 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=148.7
Q ss_pred CCCCeeEEEeccCCC-eEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce-
Q 001190 830 LEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE- 906 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~-~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~- 906 (1128)
+...|+.++|||..+ ++..++ +.+|+|.|+++...+..+..+ ..+.+++|.-++..++..|..+|.|.|||++..+
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 778899999999887 667777 899999999999999999887 7899999999778889999999999999998542
Q ss_pred eeecccc--cccCeeEEE------EcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE
Q 001190 907 VKSKLKG--HQKRITGLA------FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 907 ~~~~l~~--h~~~V~~l~------~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 978 (1128)
.+..+.+ ...+|..++ ..+-|.+|+....+ +..|.+............. ..++...++++.+-.+.+
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel---e~pG~cismqy~~~snh~ 345 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL---EPPGICISMQYHGVSNHL 345 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc---CCCcceeeeeecCccceE
Confidence 2222222 223444433 33345566655544 6677776533221111111 111344555566644555
Q ss_pred EEEe-c-------CeEEE-EecCCcccccccccCC-C----CCCCeEEEEEeeCCCEEE-EEecCCcEEEEecCCCceEE
Q 001190 979 LVVH-E-------TQLAI-YDASKMERIRQWTPQD-A----LSAPISCAVYSCNSQLVF-ATFCDGNIGVFDADTLRLRC 1043 (1128)
Q Consensus 979 ~~~~-d-------~~i~v-~d~~~~~~~~~~~~~~-~----h~~~v~~l~~s~dg~~l~-t~~~dg~i~vwd~~~~~~~~ 1043 (1128)
+++. . ..+-. -|-.+|..+....... + .-..-..+.-.+|..+|+ +|+.-+.+.+||..+++.+.
T Consensus 346 l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 346 LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheee
Confidence 5431 1 01111 1111222222111100 0 000111222244566666 46677889999999999999
Q ss_pred EeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1044 YIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
++.. .. .+..+.....++.-++..-+|..++|+..+.
T Consensus 426 ~l~~-----------~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 426 TLAL-----------SE--PVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred eccc-----------Cc--ceeecceeecCCcchhhheecceEEEEecCC
Confidence 8882 22 2355655555666677777888999986543
No 318
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.43 E-value=0.0002 Score=79.92 Aligned_cols=296 Identities=16% Similarity=0.184 Sum_probs=155.3
Q ss_pred eCCCCcEEEEe--------eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 353 HPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 353 spdg~~lla~g--------s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
||||+++|+.- +..+.+.|||+.+++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78998655522 234688999999876543 11125678899999999999988
Q ss_pred eCCCeEEEEEccCCCcceeceeeccc----------------ccceeEEEEecCCCeEEEEEe-cCCCeEEEEecCCCeE
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQIDAH----------------VGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKL 487 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~~h----------------~~~v~~l~fs~d~~~~~l~s~-s~d~~i~vWd~~g~~~ 487 (1128)
. ++.|.+++..+++..+. +..|- -+.-..+-|||||++ |+.. -++..|..+. +
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~-----~ 130 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP-----L 130 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE-----E
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE-----e
Confidence 5 56799999887754432 22220 122356889999995 4433 2233343333 0
Q ss_pred EEecCCCC---CeEEEeccCCCCccEEEEEeccC--cEEEEecCCCCcee-ee----cCCCCeEEEEEEcCCCCeEEEee
Q 001190 488 FNFEGHEA---PVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGSRV-DY----DAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 488 ~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~-~~----~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
........ .+..+.+ |.. |..+- .+.++|+.+++... .. .....-+..+.|+++++.++...
T Consensus 131 ~~~~~~~~~yp~~~~~~Y-Pk~-------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~ 202 (353)
T PF00930_consen 131 PDYSPPDSQYPEVESIRY-PKA-------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW 202 (353)
T ss_dssp EEESSSTESS-EEEEEE---BT-------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred eccCCccccCCccccccc-CCC-------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence 00111111 2333332 211 11122 34557776665432 21 23455788999999999555444
Q ss_pred eccC-CCceEEEEeCCCCceeeEeccccCCce---eEEEEe-CCCCEEEEEE-CCC--cEEEEECCCCeeeEEEecCCCC
Q 001190 558 TSKD-GDSFLVEWNESEGTIKRTYAGFRKKSN---GVVQFD-TTQNHFLAVG-EDS--QIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 558 ~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~l~~~s-~dg--~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
.+++ ....+.+.|..++............-+ ....+. +++..++..+ .+| .|++++..++....... +.
T Consensus 203 ~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~---G~ 279 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS---GD 279 (353)
T ss_dssp EETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS----SS
T ss_pred cccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc---Cc
Confidence 4433 344667788887766544443333222 245554 6666655544 555 46666776666442222 22
Q ss_pred CCcc-eEEEcCCCCEEEEEEcC---C--cEEEEEcccCccccccccCCccccccCcceeeeeeccccccccc
Q 001190 630 PNLP-RLRFSKEGNLLAVTTAD---N--GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1128)
Q Consensus 630 ~~v~-~v~~sp~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 695 (1128)
-.|. .+.++++++.|...+.. + .|...++.. ....+.+...... -..+.|+|+|++++..
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~-~~~~~~LT~~~~~-----~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS-GGEPKCLTCEDGD-----HYSASFSPDGKYYVDT 345 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE-TTEEEESSTTSST-----TEEEEE-TTSSEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC-CCCeEeccCCCCC-----ceEEEECCCCCEEEEE
Confidence 2453 46788887776644432 2 344444441 1222222221111 1478999999988643
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.42 E-value=2.1e-05 Score=88.86 Aligned_cols=182 Identities=10% Similarity=0.030 Sum_probs=120.1
Q ss_pred EeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC----cEEEEecccceeeecc
Q 001190 838 ALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS----TIHIYNVRVDEVKSKL 911 (1128)
Q Consensus 838 ~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l 911 (1128)
=++|||+.+...+ .+.+.+.|.++.+...++.-.. ....+++++ +++++++.+.+. ++..-+..+...+..+
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 3567887765444 4678899999988877766433 456789999 888887776322 2333322221111111
Q ss_pred cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC-----CcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cC
Q 001190 912 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-----WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ET 984 (1128)
Q Consensus 912 ~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~ 984 (1128)
.- ..+ -++.++|++... .++.|.+.|..+ .+.+..++.. .....+.++|||++++++. +.
T Consensus 277 ni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-------KsPHGV~vSPDGkylyVanklS~ 343 (635)
T PRK02888 277 NI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-------KNPHGVNTSPDGKYFIANGKLSP 343 (635)
T ss_pred ch--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-------CCccceEECCCCCEEEEeCCCCC
Confidence 10 000 133457876665 367899999987 3333333333 5677899999999999975 88
Q ss_pred eEEEEecCCccc------------ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 985 QLAIYDASKMER------------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 985 ~i~v~d~~~~~~------------~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
.+.|+|+.+.+. +.+... ...-...+|.++|....+-.-|..|..|++.+
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999999998653 222222 34445778999998777888999999999987
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.41 E-value=4.2e-05 Score=86.44 Aligned_cols=138 Identities=15% Similarity=0.165 Sum_probs=90.4
Q ss_pred eccCCCeEEEEeCCeEEEEECCC-----ceEEEEeeCCCCCeeEEEEcCCCCCEEEE-EeCCCcEEEEeccccee-----
Q 001190 839 LSKNDSYVMSATGGKISLFNMMT-----FKVMTTFMSPPPASTFLAFHPQDNNIIAI-GTEDSTIHIYNVRVDEV----- 907 (1128)
Q Consensus 839 ~s~dg~~la~~~dg~i~vwd~~~-----~~~~~~~~~~~~~v~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~----- 907 (1128)
+.+||++... .+++|.+.|..+ .+.+..+. -......++++| ||+++++ +..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457876665 467899999988 34455554 445678899999 7776655 45689999999987542
Q ss_pred -------eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC------C----cccceeEEeecCCCCCCCccEEE
Q 001190 908 -------KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT------W----EKRKSVTIHIPAGKTPTGDTRVQ 970 (1128)
Q Consensus 908 -------~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~------~----~~~~~~~~~~~~~~~~~~v~~v~ 970 (1128)
..+..--.++ ...+|.++|....|...|..|..||+.. | ..+..+.++-..+|. ...-.=.
T Consensus 361 ~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~-~~~~g~t 438 (635)
T PRK02888 361 IKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN-HASMGET 438 (635)
T ss_pred CCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcccee-eecCCCc
Confidence 3333322222 3678999999888999999999999986 2 222333333333322 1111112
Q ss_pred EcCCCCEEEEE
Q 001190 971 FNADQVRMLVV 981 (1128)
Q Consensus 971 ~s~d~~~l~~~ 981 (1128)
-.|||+||++.
T Consensus 439 ~~~dgk~l~~~ 449 (635)
T PRK02888 439 KEADGKWLVSL 449 (635)
T ss_pred CCCCCCEEEEc
Confidence 37899999984
No 321
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.40 E-value=9.8e-07 Score=83.97 Aligned_cols=134 Identities=22% Similarity=0.227 Sum_probs=98.3
Q ss_pred HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001190 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQ 117 (1128)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1128)
...++++|++|+++.|++.++...+.-..... .+.|.|++|+|+||+..++..+|+.+.|+.+.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 46789999999999999999886332211112 38999999999999999999999999999997765445667888888
Q ss_pred hhcccCccc--hhhhcccCCchHHHHHHHHHHHhhcccCcccccccCCCCCC-hHHHHHHHHHHHHHH
Q 001190 118 LLTLSNFRE--NEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLK-SSRLRTLINQSLNWQ 182 (1128)
Q Consensus 118 ll~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1128)
+|....... ...+...-+. .+|+++.+.+.+.+-..- .+| .+.|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~~-~~~~~la~~~~~~~l~~~---------~~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLSP-ERREELAEEFNSAILKSY---------GLPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHhCh-HHHHHHHHHHHHHHHHHh---------CcCCCCHHHHHHHHHHHHh
Confidence 887766554 2233333333 778899999988765422 133 457888888776554
No 322
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=9.1e-07 Score=89.08 Aligned_cols=162 Identities=16% Similarity=0.139 Sum_probs=119.2
Q ss_pred EEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeE
Q 001190 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1128)
Q Consensus 351 ~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i 430 (1128)
+||-+-.-+-++.+.+..|-|-|+++|-... +. ..+.|.++.|.-.+.++..|+.+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcE
Confidence 5653322122333467789999999886532 22 57789999999989999999999999
Q ss_pred EEEEccCCCc---ceeceeecccccceeEEEEec-CCCeEEEEEecCCCeEEEEe-cCCCe---EEEecCCCCCeEEEec
Q 001190 431 QLYSYAGSND---LRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGHEAPVYSICP 502 (1128)
Q Consensus 431 ~vwd~~~~~~---~~~~~~~~~h~~~v~~l~fs~-d~~~~~l~s~s~d~~i~vWd-~~g~~---~~~~~~h~~~v~~~~~ 502 (1128)
.+.|+..+.. -.. .---|...|+++..-. +++ +|++.+-+|.|++|| .--++ +..+.||-..-.-+-+
T Consensus 277 ~~iDLR~rnqG~~~~a--~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCA--QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred EEEEeeecccCCCcce--EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence 9999986511 111 1225899999998777 566 788889999999999 54444 8899999776555555
Q ss_pred cCCCCccEEEEEeccCcEEEEecCCCCceeeecCC
Q 001190 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (1128)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 537 (1128)
+-++....+++++.|...|+|.++.+....++...
T Consensus 353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 55556678999999999999999887766655443
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.39 E-value=5.2e-05 Score=84.48 Aligned_cols=284 Identities=14% Similarity=0.082 Sum_probs=164.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
|...|.--+++..++ +++.|+.-|.+.+|+-.+|+.... ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 455666677788888 789999999999999888776532 1333456677788999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceee---cccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCC-----eEEEecCCC
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR-----KLFNFEGHE 494 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~---~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~-----~~~~~~~h~ 494 (1128)
.|+..|.|.|+-++.+.+-.....- ..|...|++++|++|+. .+++|...|.|..-..+.. ..+.+..-.
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 9999999999999875543322111 24778999999999999 7999999999987773331 123333345
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCC--eEEEEEEcCC----CCeEEEeeeccCCCceEEE
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSAD----GSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~i~~~~~s~~----g~~l~~~~~~~~~~~~i~~ 568 (1128)
+.|-.+... ++.+|++... . -.+++.+.......-..... .-...+|-|. .+-.+.++ ....++
T Consensus 171 s~IVQlD~~---q~~LLVStl~-r-~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-----RPG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTLT-R-CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-----RPGLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhhh-h-hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-----cCCCce
Confidence 566666542 3333433332 2 22344433221111111111 1233444443 33344443 334678
Q ss_pred EeCCC-CceeeEeccc-------------cC---C-------ceeEEE----EeCCCCEEEEEECCCcEEEEECCCCeee
Q 001190 569 WNESE-GTIKRTYAGF-------------RK---K-------SNGVVQ----FDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 569 wd~~~-~~~~~~~~~~-------------~~---~-------~v~~~~----~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
|.++- |..+++..-. .. . .-..+. +.-.+.++++-++-| |+|+|.++.+.+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 87652 3333332210 00 0 000011 111223455555444 889998877665
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCcc
Q 001190 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~ 663 (1128)
.-.... + .|..++ -+++-|.+-..|+.+++..+.+..+
T Consensus 320 l~se~~-~--DI~dVs--~~~neiFvL~~d~~l~~~sv~s~qr 357 (726)
T KOG3621|consen 320 LWSEGG-H--DILDVS--HCGNEIFVLNLDRGLKVESVASRQR 357 (726)
T ss_pred EeecCC-C--ceeEEe--ecCceEEEEecCCceeEEEeehhHH
Confidence 544322 1 344444 3566677777777777777766533
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=3.2e-07 Score=102.88 Aligned_cols=200 Identities=18% Similarity=0.209 Sum_probs=147.4
Q ss_pred eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCC--cEE
Q 001190 863 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA--QLC 940 (1128)
Q Consensus 863 ~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg--~i~ 940 (1128)
+..+++..|....+|++|+. +.++|++|+-.|.|++|++.+|.......+|..+|+.+.-+.||..+++.+.-. ...
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 44556777888999999999 889999999999999999999999999999999999999999999777655433 478
Q ss_pred EEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccccc-ccCCCCCCCeEEEEEeeC
Q 001190 941 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQW-TPQDALSAPISCAVYSCN 1018 (1128)
Q Consensus 941 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~-~~~~~h~~~v~~l~~s~d 1018 (1128)
+|++..-- ...|......++.|+.....-+.|. .....+||+.++..+..+ ....+.+..-++..|||+
T Consensus 1171 LW~~~s~~---------~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1171 LWDASSTG---------GPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred Hhcccccc---------CccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence 99987621 1122225567888888755545554 567889999999887763 333333455588899999
Q ss_pred CCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1019 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1019 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
+++++ .|| .+||+...+.+.++...+ .+ ..=.|+|+ +..++.-+ -|||+-+-..
T Consensus 1242 D~LIl---ndG--vLWDvR~~~aIh~FD~ft------------~~-~~G~FHP~-g~eVIINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1242 DTLIL---NDG--VLWDVRIPEAIHRFDQFT------------DY-GGGGFHPS-GNEVIINS-----EIWDMRTFKL 1295 (1516)
T ss_pred cceEe---eCc--eeeeeccHHHHhhhhhhe------------ec-ccccccCC-CceEEeec-----hhhhhHHHHH
Confidence 99887 455 689999988888877432 11 12347884 66666654 4677666443
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.38 E-value=7.3e-07 Score=62.52 Aligned_cols=39 Identities=28% Similarity=0.564 Sum_probs=37.0
Q ss_pred ceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001190 905 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1128)
Q Consensus 905 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd 943 (1128)
++++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.36 E-value=0.00011 Score=86.84 Aligned_cols=277 Identities=13% Similarity=0.165 Sum_probs=159.7
Q ss_pred CcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
+.|.++.|.-++.. +..+..+|.|.+-|..+..... ...-.++|.+++||||++.++..
T Consensus 69 ~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLALI 127 (1265)
T ss_pred cceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEEE
Confidence 58999999999884 5667789999999887765432 34457799999999999999999
Q ss_pred eCCCeEEEEEccCCCcceeceeecc---cccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCe-EEEecCCCCCeEE
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK-LFNFEGHEAPVYS 499 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~~---h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~-~~~~~~h~~~v~~ 499 (1128)
+..+++.+-+- +-.++... .+.. ..+..-.+-|-....+ +-|+ .|...--+ ..... +....-+ +.=++
T Consensus 128 T~~~tll~mT~-~f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~~ 200 (1265)
T KOG1920|consen 128 TGRQTLLFMTK-DFEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIEQD-DHKTS 200 (1265)
T ss_pred eCCcEEEEEec-cccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchhhc-cCCce
Confidence 88887765432 21222110 0100 0111222333222211 1111 01111111 00000 0000011 12244
Q ss_pred EeccCCCCccEEEEE-----eccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC-
Q 001190 500 ICPHHKENIQFIFST-----AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE- 573 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~-----~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~- 573 (1128)
++| .+||+++++. ...+.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ +..|.++.-+.
T Consensus 201 IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNGL 276 (1265)
T KOG1920|consen 201 ISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNGL 276 (1265)
T ss_pred EEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecCCc
Confidence 666 5588888883 223799999865 3333333333445568999999999998775443 55788887543
Q ss_pred --CceeeEeccccCCceeEEEEeCCCCEEEE---EECCCcEEEEECCCCeeeEE--EecCCCCCCcceEEEcCC-CCEEE
Q 001190 574 --GTIKRTYAGFRKKSNGVVQFDTTQNHFLA---VGEDSQIKFWDMDNVNILTS--TDAEGGLPNLPRLRFSKE-GNLLA 645 (1128)
Q Consensus 574 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~v~~sp~-~~~l~ 645 (1128)
|.....++.... .+..++|+.++..|++ ......|++|...+...... +..... .-+.|+|. ...+.
T Consensus 277 ~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L~ 351 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTLH 351 (1265)
T ss_pred cccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeEE
Confidence 222222333332 3788999999998888 44555699999988764332 332222 23889984 33444
Q ss_pred EEEcCCcEEEEEc
Q 001190 646 VTTADNGFKILAN 658 (1128)
Q Consensus 646 ~~~~dg~i~iw~~ 658 (1128)
+-..+|...+++.
T Consensus 352 v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 352 VLRESGQRLVRDF 364 (1265)
T ss_pred EEecCCcEEEEEE
Confidence 4446777666654
No 327
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.35 E-value=0.00019 Score=75.20 Aligned_cols=206 Identities=18% Similarity=0.258 Sum_probs=133.9
Q ss_pred eeEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecc-cceeee
Q 001190 834 VPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VDEVKS 909 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~ 909 (1128)
...+++|.||+++.+.. ...|.|-|+...+.+.++.... +..+ -|..++-+.+-|.||.+.-..+. .|+...
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEE--EecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 44578999999998886 4679999999999998886432 2222 23234557788889999998887 455432
Q ss_pred c----ccccccCe-eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecC------CCCCCCccEEEEcCCCCEE
Q 001190 910 K----LKGHQKRI-TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 910 ~----l~~h~~~V-~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~l 978 (1128)
+ |..-.+++ ..-+++.++..++..+.+|.|+--|+............... +-.+..-..+++++....|
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 2 22222222 23344555556666788898988888776543333332211 1111445568888766655
Q ss_pred EEE-e---c-------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCC-EEEEE-ecCCcEEEEecCCCceEEEe
Q 001190 979 LVV-H---E-------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFAT-FCDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 979 ~~~-~---d-------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~t~-~~dg~i~vwd~~~~~~~~~~ 1045 (1128)
.+- + + ..|.+||+.+++.+..+.. ..++.+|+.|.|.+ +|++. ..++.+.|||..+|+.+..+
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 552 1 1 2488899999999999887 45788999999988 55544 45899999999999999998
Q ss_pred CC
Q 001190 1046 AP 1047 (1128)
Q Consensus 1046 ~~ 1047 (1128)
..
T Consensus 329 ~~ 330 (342)
T PF06433_consen 329 EQ 330 (342)
T ss_dssp --
T ss_pred hc
Confidence 83
No 328
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=1.9e-06 Score=86.85 Aligned_cols=164 Identities=12% Similarity=0.142 Sum_probs=121.7
Q ss_pred EEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC----Cce
Q 001190 456 DLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM----GSR 531 (1128)
Q Consensus 456 ~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~----~~~ 531 (1128)
.++|+-+-..+. ++.+.+..|-+-|..+...+.|. ..+.|.++.|+.. +.+++.|+..|.|...|++.. ...
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhccc--CCeeEecccCCcEEEEEeeecccCCCcc
Confidence 346665433324 55666778888884443444554 5667888888653 469999999999999999876 333
Q ss_pred eeecCCCCeEEEEEEcC-CCCeEEEeeeccCCCceEEEEeCCCCce---eeEeccccCCcee-EEEEeCCCCEEEEEECC
Q 001190 532 VDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNG-VVQFDTTQNHFLAVGED 606 (1128)
Q Consensus 532 ~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~-~~~~~~~~~~l~~~s~d 606 (1128)
.....|+..|+++..-. ++++|++... ++.|.+||.+.-++ ++.+.||-+.... -+-+.+.+..++++|.|
T Consensus 292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 44556788899988777 7777777764 89999999998777 8999999763322 23456777889999999
Q ss_pred CcEEEEECCCCeeeEEEecCC
Q 001190 607 SQIKFWDMDNVNILTSTDAEG 627 (1128)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~ 627 (1128)
...+||.+..|.++.+++...
T Consensus 368 cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eEEEEEecccCceeeccCCCC
Confidence 999999999999998886543
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.2e-05 Score=90.67 Aligned_cols=190 Identities=15% Similarity=0.185 Sum_probs=136.4
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccc
Q 001190 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK 951 (1128)
Q Consensus 872 ~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~ 951 (1128)
...++|.+++ +++++.|+.+|.|++++.... . .+...|+.. ..+|.+++||+.||+|.|-.+.+.+...
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3457778885 579999999999999987643 2 444446554 5689999999999999999999987766
Q ss_pred eeEEeecCCCCCCCccEEEEcCC-----CCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe
Q 001190 952 SVTIHIPAGKTPTGDTRVQFNAD-----QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 952 ~~~~~~~~~~~~~~v~~v~~s~d-----~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
....+ .++.+|+++|| .+.+++|+...+.++.-.=.........+.. .++|.++.|. |.++|=++
T Consensus 108 ~~df~-------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~-eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 108 QYDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEG-EGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred eEecC-------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecC-ccceEEEEec--CcEEEEec
Confidence 66665 78899999998 5567777654477776442222222222222 7899999994 77888887
Q ss_pred cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1027 CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1027 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
.+| |+|||..+++.+..+.++.... ....++-.+.|.+. ..|+.| ..-+|+|..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~------R~e~fpphl~W~~~--~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSV------RPELFPPHLHWQDE--DRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCC------CcccCCCceEecCC--CeEEEe-cCCeEEEEEEe
Confidence 666 8999999999999988665332 22345567888873 555554 34467777777
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=4.1e-05 Score=87.03 Aligned_cols=199 Identities=13% Similarity=0.166 Sum_probs=131.0
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC-eeEEEEcCCCCEEEEEcCCCc-----EEEEECCCCcccc-
Q 001190 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLNILVSSGADAQ-----LCVWSIDTWEKRK- 951 (1128)
Q Consensus 879 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~~~Dg~-----i~iwd~~~~~~~~- 951 (1128)
+|++ ++..+|.|+.+|.|.+.+ ..-+.+..++++... |..+....+..+|++.+.|+. |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 778899999999988886 334555788888777 555555555579999888754 8999997643222
Q ss_pred eeEE-----ee-cCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecC--CcccccccccCCCCCCCeEEEEEeeCCCEE
Q 001190 952 SVTI-----HI-PAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDAS--KMERIRQWTPQDALSAPISCAVYSCNSQLV 1022 (1128)
Q Consensus 952 ~~~~-----~~-~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~--~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1022 (1128)
.... .. ..+..+.+++.++.+.+-+.+++|- +|.|..+.-. ..+-.+....+.+ ..+|+.++|-.|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-KEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC-CCCceeeEEecCCcee
Confidence 1111 11 2222347889999999988888884 8888888533 2222222222222 8899999999999974
Q ss_pred EEEecCCcEEEEecCCCce--EEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1023 FATFCDGNIGVFDADTLRL--RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1023 ~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+-+.+-..|.+|.+. |+. ...+. .+.+...|.+|++..+. |++|+ +.-+.+++.+.-+
T Consensus 187 lFv~Tt~~V~~y~l~-gr~p~~~~ld------------~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLS-GRTPSLKVLD------------NNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred EEEEecceeEEEEec-CCCcceeeec------------cCCccceeeecCCCCcc-EEEec-CceEEEEcCCCcc
Confidence 444456789999998 443 23344 45566778888875333 44433 2467777776543
No 331
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.29 E-value=5.6e-06 Score=80.28 Aligned_cols=198 Identities=17% Similarity=0.145 Sum_probs=117.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecccceee------------ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 001190 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK------------SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVW 942 (1128)
Q Consensus 875 v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~------------~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iw 942 (1128)
++.+.++ +...|+++..++.+......++.+. +.+..|+++-.+-+.+--+..+++++.||.+.+.
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 4444444 2345555555555544443333222 2333455444444445556789999999999999
Q ss_pred ECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE------ecCeEEEEecCCcccccccccCCCCCCCeEEEEEe
Q 001190 943 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYS 1016 (1128)
Q Consensus 943 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s 1016 (1128)
+.+.-.... -++...+ ..-.+.++...+..+.++ .-+..++|++...+....-.. . ...|.+++-.
T Consensus 117 s~~~~~~~~---~~i~~~~--~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--~-~~~v~~l~~h 188 (319)
T KOG4714|consen 117 STDKDLALM---SRIPSIH--SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--A-LDAVTALCSH 188 (319)
T ss_pred echHHHhhh---hhccccc--ccccccceeecccEEecCCcceEeeccceeeeccccccccccccc--c-cccchhhhCC
Confidence 987622111 1111111 112223333445555543 245566676654332221111 1 3448888888
Q ss_pred eCCC-EEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1017 CNSQ-LVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1017 ~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
|..+ .+++|+.||.+-+||++......... ..|...+.-+-|+|+++..|++++.||.+.-||-++
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l-----------~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLL-----------KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHH-----------HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 8655 55678899999999998874322222 255566678999999999999999999999999884
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.29 E-value=0.00068 Score=71.11 Aligned_cols=245 Identities=13% Similarity=0.135 Sum_probs=147.4
Q ss_pred eeEEEeccCCCeEEEEe----C-------CeEEEEECCCceEEEEeeCCCC-------CeeEEEEcCCCCCEEEEEe--C
Q 001190 834 VPCIALSKNDSYVMSAT----G-------GKISLFNMMTFKVMTTFMSPPP-------ASTFLAFHPQDNNIIAIGT--E 893 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~----d-------g~i~vwd~~~~~~~~~~~~~~~-------~v~~l~~s~~d~~~lasg~--~ 893 (1128)
.-.+.+||||+.+++++ . ..|.+||..+.....++.-... ....++++. |++++.+.. -
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~-dgk~~~V~N~TP 116 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSA-DGKFLYVQNFTP 116 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-T-TSSEEEEEEESS
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEcc-CCcEEEEEccCC
Confidence 44578899999988753 1 2399999999988887654332 234567777 777776543 3
Q ss_pred CCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECC-CCcccceeEEeecCCCCCCCccEEEEc
Q 001190 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID-TWEKRKSVTIHIPAGKTPTGDTRVQFN 972 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~~s 972 (1128)
-..|.|-|+..++.+.++.- ..+..+--+.+ +-+.+.+.||.+.-..++ .|+.. ......+.......+..-+++
T Consensus 117 a~SVtVVDl~~~kvv~ei~~--PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDT--PGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYS 192 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEG--TSEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEE
T ss_pred CCeEEEEECCCCceeeeecC--CCEEEEEecCC-CceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceE
Confidence 45788889888888776652 22223322332 457788889999999998 45544 333334433332333344555
Q ss_pred CC-CCEEEEEecCeEEEEecCCcccc--cccccCC-------CCCCCeEEEEEeeCCCEEEEEec---CC-------cEE
Q 001190 973 AD-QVRMLVVHETQLAIYDASKMERI--RQWTPQD-------ALSAPISCAVYSCNSQLVFATFC---DG-------NIG 1032 (1128)
Q Consensus 973 ~d-~~~l~~~~d~~i~v~d~~~~~~~--~~~~~~~-------~h~~~v~~l~~s~dg~~l~t~~~---dg-------~i~ 1032 (1128)
.. +.++.++-+|.|+-.|+...... ..+.... --.+...-+++.+....|++... ++ .|-
T Consensus 193 ~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW 272 (342)
T PF06433_consen 193 RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW 272 (342)
T ss_dssp TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence 44 45666666888887777654321 1111100 00234456777776655554332 22 388
Q ss_pred EEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEE-ECCCcEEEEcCCCCCC
Q 001190 1033 VFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG-LTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1033 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~-~~dg~i~iWd~~~~~~ 1096 (1128)
++|+.+++.+.++.. .+. +.+|+.+.++..+|.+. ..++.+.+||..+|+.
T Consensus 273 v~D~~t~krv~Ri~l-----------~~~--~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 273 VYDLKTHKRVARIPL-----------EHP--IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEETTTTEEEEEEEE-----------EEE--ESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EEECCCCeEEEEEeC-----------CCc--cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 889999999999982 222 34677778766677665 4589999999999864
No 333
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=7.4e-06 Score=85.58 Aligned_cols=213 Identities=13% Similarity=0.074 Sum_probs=151.1
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc--c-eeeecccccccCeeEEEEcCCCCEEEEEcC-CCcEEEEECCC
Q 001190 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV--D-EVKSKLKGHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDT 946 (1128)
Q Consensus 871 ~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~--~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~-Dg~i~iwd~~~ 946 (1128)
|...|+.+..+ ..+++.+++.||.++.|.-.. | +.+..+..|.+.|.+++.+.||..+.|++. |..++++|+.+
T Consensus 8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 66777777766 467999999999999997543 2 456778889999999999999999999887 99999999988
Q ss_pred CcccceeEEeecCCCCCCCccEEEEcCC-CC-EEEEE--ecCeEEEEecCCccc-ccccccCCCCCCCeEEEEEeeCCCE
Q 001190 947 WEKRKSVTIHIPAGKTPTGDTRVQFNAD-QV-RMLVV--HETQLAIYDASKMER-IRQWTPQDALSAPISCAVYSCNSQL 1021 (1128)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~v~~v~~s~d-~~-~l~~~--~d~~i~v~d~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~ 1021 (1128)
-.....+.+...++ ...+..++. -. .++++ .++.+.|+|-..+.+ ...+.. -|..+|.++.+.+-+.-
T Consensus 86 ~DminmiKL~~lPg-----~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk--lH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG-----FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK--LHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCCC-----ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc--cccCceEEEEeeccccc
Confidence 55443333332211 112222332 22 34443 478999999775553 333332 35899999999999999
Q ss_pred EEEEecCCcEEEEecCC------CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1022 VFATFCDGNIGVFDADT------LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1022 l~t~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+++....|-|.-|..+. .++...+.....+..- ......+.++.|+| ++..+.+-+.|..|+++++.+|.
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f---~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF---PKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcc---cccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 99999999999999883 2222222211211111 13345678999999 69999999999999999999886
Q ss_pred C
Q 001190 1096 G 1096 (1128)
Q Consensus 1096 ~ 1096 (1128)
.
T Consensus 235 l 235 (558)
T KOG0882|consen 235 L 235 (558)
T ss_pred h
Confidence 3
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.25 E-value=0.00032 Score=78.19 Aligned_cols=301 Identities=15% Similarity=0.166 Sum_probs=148.8
Q ss_pred eCCCCEEEEEE---------CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccc
Q 001190 594 DTTQNHFLAVG---------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1128)
Q Consensus 594 ~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~ 664 (1128)
|||+++++... ..+.+.+||+++++....... ...+....|||+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 46777766632 356799999999876655443 23578999999999999887 578999987766222
Q ss_pred cccccCCcc--c---------cccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCC
Q 001190 665 LRAVENPPF--E---------ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDD 733 (1128)
Q Consensus 665 ~~~~~~~~~--~---------~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 733 (1128)
.-+..+... . ...+.-..+-+||||+.|+ ...
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la-------------------------------------~~~ 119 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA-------------------------------------FLR 119 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE-------------------------------------EEE
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEE-------------------------------------EEE
Confidence 212212000 0 0011123445555555553 222
Q ss_pred -CCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccce
Q 001190 734 -VTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 812 (1128)
Q Consensus 734 -~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~ 812 (1128)
.+..++.+.+........ ....+..+.+-.-| ..+..+.+| +
T Consensus 120 ~d~~~v~~~~~~~~~~~~~-----------~yp~~~~~~YPk~G------~~np~v~l~--------------------v 162 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDS-----------QYPEVESIRYPKAG------DPNPRVSLF--------------------V 162 (353)
T ss_dssp EE-TTS-EEEEEEESSSTE-----------SS-EEEEEE--BTT------S---EEEEE--------------------E
T ss_pred ECCcCCceEEeeccCCccc-----------cCCcccccccCCCC------CcCCceEEE--------------------E
Confidence 224444444433222111 00012222221111 112222222 3
Q ss_pred eccCCCcccccccc--CCCCCCCeeEEEeccCCCeEEEE-e--C-C--eEEEEECCCceEEEEeeC-CCC---CeeEEEE
Q 001190 813 WLPSSGLLMANDVA--GVNLEEAVPCIALSKNDSYVMSA-T--G-G--KISLFNMMTFKVMTTFMS-PPP---ASTFLAF 880 (1128)
Q Consensus 813 ~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~dg~~la~~-~--d-g--~i~vwd~~~~~~~~~~~~-~~~---~v~~l~~ 880 (1128)
+++.+++....... .......+..+.|++|++.|+.. . + + .+.++|..++.....+.. ... .-....|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~ 242 (353)
T PF00930_consen 163 VDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHF 242 (353)
T ss_dssp EESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE
T ss_pred EECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccc
Confidence 34444433211111 00145568899999999944433 2 2 2 277778877765433332 112 2335665
Q ss_pred c-CCCCCEEEEEeCCCcEEEE--ecccceeeecccccccCeeE-EEEcCCCCEEE-EEcCC--CcEEEE--ECC-CCccc
Q 001190 881 H-PQDNNIIAIGTEDSTIHIY--NVRVDEVKSKLKGHQKRITG-LAFSTSLNILV-SSGAD--AQLCVW--SID-TWEKR 950 (1128)
Q Consensus 881 s-~~d~~~lasg~~dg~v~iw--d~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~-s~~~D--g~i~iw--d~~-~~~~~ 950 (1128)
. ++++.+|.....||.-+|| +...+. ...+....-.|.. +.++++++.|. ++..+ +.-.|| +++ .++.
T Consensus 243 ~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~- 320 (353)
T PF00930_consen 243 LGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP- 320 (353)
T ss_dssp -TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-
T ss_pred ccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-
Confidence 5 6466777777788865554 555554 3355544556744 67788877554 44442 234444 455 3221
Q ss_pred ceeEEeecCCCCCCCc-cEEEEcCCCCEEEEE
Q 001190 951 KSVTIHIPAGKTPTGD-TRVQFNADQVRMLVV 981 (1128)
Q Consensus 951 ~~~~~~~~~~~~~~~v-~~v~~s~d~~~l~~~ 981 (1128)
.++. .. ... ..+.|||+|++++..
T Consensus 321 --~~LT---~~--~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 321 --KCLT---CE--DGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp --EESS---TT--SSTTEEEEE-TTSSEEEEE
T ss_pred --Eecc---CC--CCCceEEEECCCCCEEEEE
Confidence 1111 11 223 589999999998863
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00021 Score=81.45 Aligned_cols=204 Identities=13% Similarity=0.161 Sum_probs=132.6
Q ss_pred EEeCCCCcEEEEeeccCeEEEEEccCCcee-cccccccccccccCccccceeccCCCcc-eEEEEEccCCCEEEEEeCCC
Q 001190 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSPDGNYVGVAFTKH 428 (1128)
Q Consensus 351 ~fspdg~~lla~gs~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spdg~~las~~~d~ 428 (1128)
+|++.+. .+|.|+.+|.|.+.+- +-.. .. +..+... |..+-.-.+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~--s~~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~ 87 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNS--SFQLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDE 87 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecc--cceeeeh-------------------heecchhhhhHhhcccCceEEEEEeecC
Confidence 3567766 7899999998877763 2222 11 3445555 33333333346788777664
Q ss_pred -----eEEEEEccCC------Ccceeceee----cccccceeEEEEecCCCeEEEEEecCCCeEEEEe--c---CCCeEE
Q 001190 429 -----LIQLYSYAGS------NDLRQHSQI----DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L---SGRKLF 488 (1128)
Q Consensus 429 -----~i~vwd~~~~------~~~~~~~~~----~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~---~g~~~~ 488 (1128)
.++||+++.- .++.....+ .....++.+++.+.+-+ .+|.|-.+|.|..+. . .|....
T Consensus 88 ~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 88 QGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred CCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhcccccee
Confidence 4999998743 222111111 12356789999999977 899999999999886 1 222222
Q ss_pred EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
-.....++|+.+++.. ++..++-+..-..|.+|.+..... ...+..++....|.++++....+++++ ...+.
T Consensus 166 ~~~~~~~pITgL~~~~--d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~ 238 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRS--DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLY 238 (933)
T ss_pred eeccCCCCceeeEEec--CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEE
Confidence 2233467899999865 444433334456789999885552 334777888999999988777566664 66799
Q ss_pred EEeCCCCceeeEec-cccC
Q 001190 568 EWNESEGTIKRTYA-GFRK 585 (1128)
Q Consensus 568 ~wd~~~~~~~~~~~-~~~~ 585 (1128)
+|+....+....|. ++..
T Consensus 239 fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 239 FYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEcCCCcceeeeecCCCeE
Confidence 99998777777777 5543
No 336
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.18 E-value=5.8e-06 Score=57.87 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=36.8
Q ss_pred ceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001190 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1128)
Q Consensus 862 ~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd 901 (1128)
++++.++.+|...|.+++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.16 E-value=0.0019 Score=75.36 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=95.4
Q ss_pred EEEEcCCCCCEEEEEeCCC------------------cEEEEecccceeeecccccccCe------eEEEEc----CCCC
Q 001190 877 FLAFHPQDNNIIAIGTEDS------------------TIHIYNVRVDEVKSKLKGHQKRI------TGLAFS----TSLN 928 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~~dg------------------~v~iwd~~~~~~~~~l~~h~~~V------~~l~~s----~d~~ 928 (1128)
..++.+ .+..++.++.++ .|.-+|..+|+.+-.++.-.... ....+. -+|.
T Consensus 221 ~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 221 SPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 345555 455666776565 79999999998886654211111 011111 2343
Q ss_pred ---EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE------------------EecCeEE
Q 001190 929 ---ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV------------------VHETQLA 987 (1128)
Q Consensus 929 ---~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~------------------~~d~~i~ 987 (1128)
.++.++.+|.+...|..+|+.+-...... ..++.+| +..++. ..++.+.
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~ 369 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLA 369 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEeec---------cccccCC-ceEEEccccccccCcccccCCCCCCCceEEE
Confidence 57778899999999999999776554431 1122233 111111 1246788
Q ss_pred EEecCCcccccccccCCCC-----CCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 988 IYDASKMERIRQWTPQDAL-----SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~~h-----~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
-.|..+|+.+-........ ..+...-...-.+.+|++++.||.|+.+|.++|+.+.+..
T Consensus 370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 8888888776555432100 0111111112356789999999999999999999999877
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.00018 Score=80.40 Aligned_cols=280 Identities=17% Similarity=0.118 Sum_probs=158.6
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
+...|.=-+++..+++++.|++-|.+++|+-. .++.......+ ....+..+.+|++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~----------------------~~~~~~~~~~~--~~~~~~~~~vs~~ 87 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRH----------------------TGEMRKLKNEG--ATGITCVRSVSSV 87 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecC----------------------chhhhcccccC--ccceEEEEEecch
Confidence 44556666778889999999999999998643 22222222222 3455667788899
Q ss_pred CCeEEEEe-CCeEEEEECCCceEE-----EEe-eCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce----eeecc
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVM-----TTF-MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE----VKSKL 911 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~-----~~~-~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l 911 (1128)
..++|.|+ .|.|.++-+...... ... ..|...|+|++|++ ++..+.+|...|+|..-.+++.. ..+.+
T Consensus 88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i 166 (726)
T KOG3621|consen 88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI 166 (726)
T ss_pred hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhcccccee
Confidence 88888888 688999887653321 111 23778899999999 99999999999999998888721 11122
Q ss_pred cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc--cceeEEeecCCCCCCCccEEEEcCC----CCEEEEEecCe
Q 001190 912 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK--RKSVTIHIPAGKTPTGDTRVQFNAD----QVRMLVVHETQ 985 (1128)
Q Consensus 912 ~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~v~~s~d----~~~l~~~~d~~ 985 (1128)
..-.+.|..+... ++.+|++.... ..+.+.+.+.. +...+.. ...-...+|-|. ..-.+.+..-.
T Consensus 167 l~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~eti~QIG~k~R~------~~~~~GACF~~g~~~~q~~~IycaRPG 237 (726)
T KOG3621|consen 167 LSEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEAETITQIGKKPRK------SLIDFGACFFPGQCKAQKPQIYCARPG 237 (726)
T ss_pred eccCcceEEeecc-cceehHhhhhh--hheeecchhHHHHhcCCCcC------CccccceEEeeccccCCCceEEEecCC
Confidence 2233566666665 34455544433 23444443221 1111110 011233444443 33444455555
Q ss_pred EEEEecC-CcccccccccCCC--------------------------CCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 986 LAIYDAS-KMERIRQWTPQDA--------------------------LSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 986 i~v~d~~-~~~~~~~~~~~~~--------------------------h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
.++|.++ .|..+++....++ +.-....+.+-.++ .+++-++-| |+|+|+.+
T Consensus 238 ~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~~ 315 (726)
T KOG3621|consen 238 LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSNN 315 (726)
T ss_pred CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEecc
Confidence 6777765 2333322111110 00111122222233 344443334 99999998
Q ss_pred CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC
Q 001190 1039 LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~ 1094 (1128)
..++..... .+. +..++- +++.|+.-..|+.+++..+.+.
T Consensus 316 ~~v~l~se~-----------~~D--I~dVs~---~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 316 SQVYLWSEG-----------GHD--ILDVSH---CGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred ceEEEeecC-----------CCc--eeEEee---cCceEEEEecCCceeEEEeehh
Confidence 887776641 232 344443 4566777777787777766654
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.14 E-value=0.0007 Score=78.92 Aligned_cols=243 Identities=12% Similarity=0.115 Sum_probs=141.7
Q ss_pred CeEEEEe-CCeEEEEECCCceEEEEeeCCCCC-----e-eEEEEcCCCCCEEEEEe---------CCCcEEEEeccccee
Q 001190 844 SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA-----S-TFLAFHPQDNNIIAIGT---------EDSTIHIYNVRVDEV 907 (1128)
Q Consensus 844 ~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~-----v-~~l~~s~~d~~~lasg~---------~dg~v~iwd~~~~~~ 907 (1128)
..++.++ ++.|..+|.++|+.+..+...... + ....+. ++ +++.++ .+|.|+-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 4455554 899999999999998887643321 1 222332 33 444453 367899999999988
Q ss_pred eeccccccc--------------------Ce-eEEEEcCCCCEEEEEcCCC------------------cEEEEECCCCc
Q 001190 908 KSKLKGHQK--------------------RI-TGLAFSTSLNILVSSGADA------------------QLCVWSIDTWE 948 (1128)
Q Consensus 908 ~~~l~~h~~--------------------~V-~~l~~s~d~~~l~s~~~Dg------------------~i~iwd~~~~~ 948 (1128)
+-.+..... .| ...++.+.+..++.++.|+ .|.-.|.++|+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 766543211 01 1234455566777776665 69999999998
Q ss_pred ccceeEEeecCCC--CCCCccEEE-E-cCCCC---EEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCC
Q 001190 949 KRKSVTIHIPAGK--TPTGDTRVQ-F-NADQV---RMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 1020 (1128)
Q Consensus 949 ~~~~~~~~~~~~~--~~~~v~~v~-~-s~d~~---~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 1020 (1128)
..-.......... .......+. . .-+|. .++++ .+|.+...|..+|+.+-..... ...++.+| .
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~--~ 339 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP--G 339 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC--c
Confidence 7765543211100 000000111 0 12333 34444 4889999999999987665421 11223333 2
Q ss_pred EEEEE------------------ecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEEC
Q 001190 1021 LVFAT------------------FCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT 1082 (1128)
Q Consensus 1021 ~l~t~------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~ 1082 (1128)
.++.+ ..+|.+.-.|+.+|+.+.+...........++......+..+ .+++++.++.
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-----~g~~v~~g~~ 414 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-----AGNLVFAGAA 414 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-----cCCeEEEECC
Confidence 33332 246789999999999888776321000000000000111112 4578999999
Q ss_pred CCcEEEEcCCCCCCCcccCC
Q 001190 1083 DGSVKVMEPSESEGKWGVSP 1102 (1128)
Q Consensus 1083 dg~i~iWd~~~~~~~w~~~~ 1102 (1128)
||.|+.+|..+|+..|....
T Consensus 415 dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 415 DGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCeEEEEECCCCceeeEEEC
Confidence 99999999999999999754
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00024 Score=80.40 Aligned_cols=178 Identities=12% Similarity=0.130 Sum_probs=123.2
Q ss_pred cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeE
Q 001190 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKI 854 (1128)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i 854 (1128)
++.++.|..+|.+++.+.+... ...+. |... ..+|.++++++ ||+|
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~------------------------~~~~~---~s~~------~~~Gey~asCS~DGkv 95 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP------------------------KTNFD---HSSS------ILEGEYVASCSDDGKV 95 (846)
T ss_pred cceeeeccccceEEEEecCCcc------------------------ccccc---cccc------ccCCceEEEecCCCcE
Confidence 5668888889999998754310 00000 1111 56899999999 8999
Q ss_pred EEEECCCceEEEEeeCCCCCeeEEEEcCC----CCCEEEEEeCCCcEEEEecccc--eeeecccccccCeeEEEEcCCCC
Q 001190 855 SLFNMMTFKVMTTFMSPPPASTFLAFHPQ----DNNIIAIGTEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 855 ~vwd~~~~~~~~~~~~~~~~v~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~ 928 (1128)
.|..+-+.+...++. -..++.+++++|+ ..+.+++|+.-| +.++.-.-- +.-..+..-.++|.++.|. |.
T Consensus 96 ~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~ 171 (846)
T KOG2066|consen 96 VIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GN 171 (846)
T ss_pred EEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--Cc
Confidence 999988887776665 3567899999992 256788899888 777754311 1111344456889999995 77
Q ss_pred EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecC
Q 001190 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1128)
Q Consensus 929 ~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~ 992 (1128)
++|=++.+| |+|||+.+++.+..++..............+.|.++.+ |++|-..+|+|..++
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 899888777 99999999887665554433333334556778877765 555656678888887
No 341
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.08 E-value=5.5e-06 Score=51.14 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhc
Q 001190 6 RELVFLILQFLEEEKFKESVHKLEKES 32 (1128)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (1128)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 342
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.02 E-value=0.011 Score=63.42 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=50.7
Q ss_pred EEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe
Q 001190 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 545 ~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
+|.+||+.|+.++ +.++...+++.|+.+++..+.-.+... ......++++++.++.......|+-.|+++.+....+.
T Consensus 42 ~ft~dG~kllF~s-~~dg~~nly~lDL~t~~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFAS-DFDGNRNLYLLDLATGEITQLTDGPGD-NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE--TTSS-EEEEEETTT-EEEE---SS-B--TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEe-ccCCCcceEEEEcccCEEEECccCCCC-CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 5789999988866 356788999999999998877665433 23346677888888877777789999999988766665
Q ss_pred cCCC
Q 001190 625 AEGG 628 (1128)
Q Consensus 625 ~~~~ 628 (1128)
.+..
T Consensus 120 ~p~~ 123 (386)
T PF14583_consen 120 VPDD 123 (386)
T ss_dssp --TT
T ss_pred CCcc
Confidence 5443
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.01 E-value=0.00062 Score=76.52 Aligned_cols=218 Identities=15% Similarity=0.196 Sum_probs=117.1
Q ss_pred CCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 831 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
......+.++|+|++++++++|.-.+|.....+.... +.-..++|.+ .++ +|+-..+++|.|+.--+.+..+.
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 3447889999999999999999999998655555432 2345688887 665 55666688999974333333333
Q ss_pred ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEe
Q 001190 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYD 990 (1128)
Q Consensus 911 l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d 990 (1128)
+... ..+..+-. |.+|...+.+ .|.+||+.+++.+..+.. ..+..|.|+++|.+++...+..+.|++
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--------~~vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--------SAVKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---------E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--------CCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence 3322 12333333 7877776654 899999999876555433 347899999999999999988999988
Q ss_pred cCCcc-----------cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCce--EEEeCCCCCCCCcccC
Q 001190 991 ASKME-----------RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL--RCYIAPSTYLSPSVLN 1057 (1128)
Q Consensus 991 ~~~~~-----------~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~ 1057 (1128)
..... .+..+... ...|.+.+|..| -+++|.. . +++- +-.|+. +..+.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYtT~-~-~lkY--l~~Ge~~~i~~ld----------- 232 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYTTS-N-HLKY--LVNGETGIIAHLD----------- 232 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE-T-T-EEEE--EETTEEEEEEE-S-----------
T ss_pred ecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEEcC-C-eEEE--EEcCCcceEEEcC-----------
Confidence 65440 11111110 456667777655 3333332 2 5555 333332 22222
Q ss_pred CCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1058 GSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1058 ~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
.+.++ +.+.| ..+.+.....|+.|..+.+.
T Consensus 233 --~~~yl--lgy~~-~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 233 --KPLYL--LGYLP-KENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp --S--EE--EEEET-TTTEEEEE-TT--EEEEE--
T ss_pred --CceEE--EEEEc-cCCEEEEEECCCCEEEEEEC
Confidence 33444 44455 35788888888888877654
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.94 E-value=0.0076 Score=69.33 Aligned_cols=248 Identities=13% Similarity=0.087 Sum_probs=135.6
Q ss_pred EEEEEEeCCCCcEEEEeeccC----eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 347 VISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+....+||||++++++-+..| .|+|+|+.+|+.+.. . +.. ..-..++|.+||+.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEEE
Confidence 447889999996655544444 699999999976542 0 111 1122399999999887
Q ss_pred EEeCCC-----------eEEEEEccCCCcceeceeecccccc--eeEEEEecCCCeEEEEEecCC--CeEEEEe-cCC--
Q 001190 423 VAFTKH-----------LIQLYSYAGSNDLRQHSQIDAHVGA--VNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSG-- 484 (1128)
Q Consensus 423 s~~~d~-----------~i~vwd~~~~~~~~~~~~~~~h~~~--v~~l~fs~d~~~~~l~s~s~d--~~i~vWd-~~g-- 484 (1128)
....+. .|..|.+.++..-.. ..+...... ...+..++|++.+++.+.+.. ..+.+-| ..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~-lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE-LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-E-EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCe-eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 765332 377777766543211 124443333 568889999997444344333 3477777 432
Q ss_pred --CeEEEecCCCCCe-EEEeccCCCCccEEEEEe---ccCcEEEEecCCCCc---eeeecCCCC--eEEEEEEcCCCCeE
Q 001190 485 --RKLFNFEGHEAPV-YSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAPGH--WCTTMLYSADGSRL 553 (1128)
Q Consensus 485 --~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~---~~~~~~~~~--~i~~~~~s~~g~~l 553 (1128)
.....+......+ ..+... ++.+++... ..+.|...++..... ...+..+.. .+..+. ..+++|
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~L 339 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYL 339 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEE
T ss_pred CcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEE
Confidence 2334443333333 333322 223333332 235666667776653 224444444 344444 455566
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEE--EE--CCCcEEEEECCCCeeeE
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA--VG--EDSQIKFWDMDNVNILT 621 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s--~dg~i~iwd~~~~~~~~ 621 (1128)
+.... .++...|++++...+...........+.+..+...++++.+.. .| .-++++.||+.+++...
T Consensus 340 vl~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 340 VLSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 65543 3467789999998555555555544445555555555554443 22 34678889998887643
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.94 E-value=0.0021 Score=72.39 Aligned_cols=225 Identities=12% Similarity=0.102 Sum_probs=120.1
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+.........+.++|+|++++++ .||.-.|+.... .+. ...+.-...+|.+.++ +|+-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~---~r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALA---WRN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTT---TEE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccC---Ccc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 44556678999999999999995 567777777322 221 2345567789999665 56666688999976
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.++.....+... ..+..+.. |.+|...+ ++.|.+||+++.+....+... +|..+.|+++|++++..+
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--- 163 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--- 163 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE----
T ss_pred cCccccceEEcCC-cccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe---
Confidence 544443333321 23444431 45565554 448999999988777777644 489999999999999886
Q ss_pred CCCceEEEEeCCCC---------c--eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCC
Q 001190 561 DGDSFLVEWNESEG---------T--IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~---------~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
+..+.+++.... - ....+... ...|.+.+|..+ .++..+.. .|+. +-+|+.-......
T Consensus 164 --~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld--- 232 (443)
T PF04053_consen 164 --KDSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD--- 232 (443)
T ss_dssp --S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S---
T ss_pred --CCeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC---
Confidence 556777765433 0 11111111 225777777655 44444444 6655 3344432222211
Q ss_pred CCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.++.-+.+.+..+.+.....++.+..+.++..
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 25677778887788888888989888877653
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.93 E-value=0.0033 Score=69.75 Aligned_cols=115 Identities=19% Similarity=0.277 Sum_probs=80.4
Q ss_pred CccEEEEcCC-CCEEEEE-----ecCe----EEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEE
Q 001190 965 GDTRVQFNAD-QVRMLVV-----HETQ----LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1034 (1128)
Q Consensus 965 ~v~~v~~s~d-~~~l~~~-----~d~~----i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vw 1034 (1128)
....+.||-. ...+.+. .+|. ..+|+....+.-+.-...-.....|.+.+++|+.+.|+.|+.||+|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 3466777763 3334432 1332 4577776544322111111227899999999999999999999999999
Q ss_pred ecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC
Q 001190 1035 DADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1035 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~ 1094 (1128)
|..++.....- ....++.++||| ++.++++|+.-|.+.+||+.-+
T Consensus 287 D~~~~~t~~~k--------------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVTLLAK--------------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCeeeeee--------------ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 99887544331 224568899999 6999999999999999997744
No 347
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.88 E-value=8.9e-06 Score=62.95 Aligned_cols=52 Identities=38% Similarity=0.552 Sum_probs=42.8
Q ss_pred HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHHHHhHHhHhhccCCH
Q 001190 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDK 90 (1128)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~ell~~~~~ 90 (1128)
+..++++|+.|+|+.|++.++..........+ .+.|.|++|+|+||++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999987554333323 39999999999999998764
No 348
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.87 E-value=0.0003 Score=80.51 Aligned_cols=183 Identities=13% Similarity=0.128 Sum_probs=136.4
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 545 (1128)
.++-|+....+...| .+++..+...-..+.|.-++. +++++.+|...|+|.+-|..+.+.+.++..|.+.|..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 577777778888889 666666555544545776653 568999999999999999999999999999999887654
Q ss_pred EcCCCCeEEEeeeccC-----CCceEEEEeCCCCceeeEeccccCCceeEEEEeCC-CCEEEEEECCCcEEEEECCC-Ce
Q 001190 546 YSADGSRLFSCGTSKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDN-VN 618 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~-~~ 618 (1128)
-.|+.|++||.+.. -|..|.|||++..+.+.-+.-+.+. ..+.|.|. ..++++++..|...+-|..+ +.
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--hhhhhcccccceEEEEecccceeeccccccCC
Confidence 57889999886542 3667899999988877666555442 34667775 35788889999999998332 11
Q ss_pred e-eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 619 I-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 619 ~-~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
+ ......+...+.+..+.+++++..++.|..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 1 12222222233588999999999999999999999997
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.87 E-value=0.0045 Score=68.76 Aligned_cols=252 Identities=15% Similarity=0.200 Sum_probs=133.0
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceec------c------------cccccccccccCc------ccccee
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV------S------------KPFKIWDMAACSL------PFQASI 401 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~------~------------~~~~~~~~~~~~~------~~~~~~ 401 (1128)
.|+++.|+++.. =||+|...|.|.||.+...+.-. . .+-++.|+...-. -.+...
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 589999999977 46889999999999987654331 0 0122223322111 113334
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecc------cccceeEEEEec-----CC-CeEEEE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAY-----PN-KLLCVV 469 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~------h~~~v~~l~fs~-----d~-~~~~l~ 469 (1128)
+....++|++++.| |=-++|.|..+|.+.|.|+.....+... .+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 56668999999998 5559999999999999999776554431 2222 344688898872 32 225788
Q ss_pred EecCCCeEEEEe-c--C-CCeE----EEecCCCCCeEEEeccCCCC-------------------ccEEEEEeccCcEEE
Q 001190 470 TCGDDKLIKVWE-L--S-GRKL----FNFEGHEAPVYSICPHHKEN-------------------IQFIFSTAIDGKIKA 522 (1128)
Q Consensus 470 s~s~d~~i~vWd-~--~-g~~~----~~~~~h~~~v~~~~~~~~~~-------------------~~~l~s~~~dg~i~~ 522 (1128)
.|...|.+.+|. . . |.-. .....+.++|..+......+ -.-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 899999999997 3 2 2222 11224666766665321111 012444555788999
Q ss_pred EecCCCCceeeecCCCCeEEEEEEc-----CCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccC---CceeEEEEe
Q 001190 523 WLYDTMGSRVDYDAPGHWCTTMLYS-----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFD 594 (1128)
Q Consensus 523 wd~~~~~~~~~~~~~~~~i~~~~~s-----~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~ 594 (1128)
+...+.+..............+++- ..+..|++.. .+|.++++.+...+.+..+..... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766655554332334444553 2444555554 589999999999888877765432 123335566
Q ss_pred CCCCEEEEEE
Q 001190 595 TTQNHFLAVG 604 (1128)
Q Consensus 595 ~~~~~l~~~s 604 (1128)
++|+.++..+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 6666444443
No 350
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.87 E-value=0.00093 Score=73.94 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=86.4
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEe----eccC----eEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVG----SSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~g----s~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1128)
.++......+....++.||-...+.+.|- +.+| .-.+|++..++... + ..+--...
T Consensus 196 lEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr---v-------------svtsipL~ 259 (545)
T PF11768_consen 196 LEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR---V-------------SVTSIPLP 259 (545)
T ss_pred EEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE---E-------------EEEEEecC
Confidence 34444445555667888886444333332 2233 23467765544321 1 11122467
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..|.|++++|+.+.|+.|+.||+|++||...+... +..+.-..+.++|+|+|. ++++|+..|.+.+||
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFD 327 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEE
Confidence 79999999999999999999999999999876322 224455688999999999 899999999999999
No 351
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.85 E-value=2.5e-05 Score=52.60 Aligned_cols=32 Identities=38% Similarity=0.546 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHHHhcCCC
Q 001190 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFF 35 (1128)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~ 35 (1128)
.++++.++|+|||...||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999975
No 352
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0021 Score=72.07 Aligned_cols=202 Identities=13% Similarity=0.101 Sum_probs=123.0
Q ss_pred eEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe--cc--CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCC
Q 001190 476 LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--ID--GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1128)
Q Consensus 476 ~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~d--g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~ 551 (1128)
.+.+=|.+|.....+..-...+..-+|++. ++.++-.+ .. ..+.+++++++....... ..+.-....|+|||+
T Consensus 174 ~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~--~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYDGYNQQKLTDSGSLILTPAWSPD--GKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccCCcceeEecccCcceeccccCcC--CCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 455555446666666655556666677664 34433321 22 358888998877766555 233345678999999
Q ss_pred eEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC-CC--cEEEEECCCCeeeEEEecCCC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DS--QIKFWDMDNVNILTSTDAEGG 628 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~~ 628 (1128)
.|+.+.. +++...|++.|+.+++..+ +....+ .-..-.|+|||++++..+. .| .|++.+.+.+....... ...
T Consensus 251 ~l~f~~~-rdg~~~iy~~dl~~~~~~~-Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~ 326 (425)
T COG0823 251 KLAFSSS-RDGSPDIYLMDLDGKNLPR-LTNGFG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGG 326 (425)
T ss_pred EEEEEEC-CCCCccEEEEcCCCCccee-cccCCc-cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCC
Confidence 9998774 5577889999998887444 333222 2335679999999998763 33 46777777766533332 222
Q ss_pred CCCcceEEEcCCCCEEEEEEcC-Cc--EEEEEcccCccccccccCCccccccCcceeeeeeccccccc
Q 001190 629 LPNLPRLRFSKEGNLLAVTTAD-NG--FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1128)
Q Consensus 629 ~~~v~~v~~sp~~~~l~~~~~d-g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 693 (1128)
. -..-.|+|||++++..+.. |. |.+.++.++.. .+.+... .....-.+.++|+.+.
T Consensus 327 ~--~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~------~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 327 G--NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTST------YLNESPSWAPNGRMIM 385 (425)
T ss_pred C--CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcccc------ccCCCCCcCCCCceEE
Confidence 1 1277899999999988753 44 55555555432 2222221 1123345666666664
No 353
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.83 E-value=1.7e-05 Score=86.86 Aligned_cols=252 Identities=12% Similarity=0.133 Sum_probs=153.8
Q ss_pred CCCeeEEEeccCCC--eEEEEe-CCeEEEEECCCceE--EEEeeCCCCCeeEEEEcCCCCCEEEEEe----CCCcEEEEe
Q 001190 831 EEAVPCIALSKNDS--YVMSAT-GGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGT----EDSTIHIYN 901 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~--~la~~~-dg~i~vwd~~~~~~--~~~~~~~~~~v~~l~~s~~d~~~lasg~----~dg~v~iwd 901 (1128)
...+.|++...+.+ .+++|. +|.|.+-....... .....++....++++|.+-|...||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 44567777665443 566665 78888877653322 2334457778999999997788888875 466899999
Q ss_pred cccc--ee--eecccc-cccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC-CC
Q 001190 902 VRVD--EV--KSKLKG-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-DQ 975 (1128)
Q Consensus 902 ~~~~--~~--~~~l~~-h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-d~ 975 (1128)
+.++ .+ ...|.+ -.....+++|-.+.+++.+|...+.+.++|+.-..... ..+. ...+..+..+| .+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svn------Tk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVN------TKYVQGITVDPFSP 208 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhh------hhhcccceecCCCC
Confidence 9876 11 122222 33456688898888999999999999999987321110 0011 03567788899 78
Q ss_pred CEEEEEecCeEEEEe-cCCcccccccccCC--CCCCCeEEEEEeeCCC-EEEE-EecCCcEEEEecCC------CceEEE
Q 001190 976 VRMLVVHETQLAIYD-ASKMERIRQWTPQD--ALSAPISCAVYSCNSQ-LVFA-TFCDGNIGVFDADT------LRLRCY 1044 (1128)
Q Consensus 976 ~~l~~~~d~~i~v~d-~~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~-~l~t-~~~dg~i~vwd~~~------~~~~~~ 1044 (1128)
.+++...|+.|.+|| ..+-+.......+. .....+..++|+|-.. .+++ .-..++|+.+|+.. ++....
T Consensus 209 nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~ 288 (783)
T KOG1008|consen 209 NYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVF 288 (783)
T ss_pred CceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccce
Confidence 899988899999999 33333222211111 1134589999999533 3444 44567899999753 111111
Q ss_pred eCCCCCCCCcccCC-CCccceEEEEEecCC-CCEEEEEECCCcEEEEcCC
Q 001190 1045 IAPSTYLSPSVLNG-SQTVYPLVVAAHPLE-PNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1045 ~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~-~~~l~s~~~dg~i~iWd~~ 1092 (1128)
+...... .+.+ +...+|....||+.+ -+....+-..-++.-+++.
T Consensus 289 ~~~~s~~---~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 289 VNYESKY---PVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred eeecccc---cccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 1111100 1222 224577888888865 2344455555555555544
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.01 Score=67.04 Aligned_cols=198 Identities=14% Similarity=0.110 Sum_probs=108.8
Q ss_pred EEeccCCCeEEEEeCC------------eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc
Q 001190 837 IALSKNDSYVMSATGG------------KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 904 (1128)
Q Consensus 837 ~~~s~dg~~la~~~dg------------~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~ 904 (1128)
++.+|.|..+|...|. .|+||+.. |+.+.++.-..+.+.++.|+. +. .|++...||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 4566777777666544 58999874 566666554448999999987 54 455677899999999863
Q ss_pred ce------eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCc-cccee---EEeecCCCCCCCccE-EEEcC
Q 001190 905 DE------VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE-KRKSV---TIHIPAGKTPTGDTR-VQFNA 973 (1128)
Q Consensus 905 ~~------~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~-~~~~~---~~~~~~~~~~~~v~~-v~~s~ 973 (1128)
.. .+....-....+....+..+|-.+++ .++.+.+-+-.... ..... +......+....... ..++.
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence 22 11111112222333344445533333 33433333221111 10100 000000000011111 23444
Q ss_pred CCCEEEE-EecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 974 DQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 974 d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
+....+. ..++.+.+.+....+. +.. .+++..+++||+|++||.-..+|.+.|....-.+..+.+.
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~----~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDS----DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccC----CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 5444333 3455666444433212 111 4789999999999999998899999999877666666666
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.0013 Score=73.88 Aligned_cols=204 Identities=15% Similarity=0.101 Sum_probs=120.5
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeecc---CeEEEEEccCCceecccccccccccccCccccceecc
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1128)
+|-.+..-........-...+..-+|+|+++.+....-.. ..+.++++++++.....
T Consensus 175 l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~-------------------- 234 (425)
T COG0823 175 LALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL-------------------- 234 (425)
T ss_pred EEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--------------------
Confidence 4444433223333333566788899999999655443222 35999999988764321
Q ss_pred CCCcceEEEEEccCCCEEEEEe-CCCe--EEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 404 DVPISVSRVAWSPDGNYVGVAF-TKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~-~d~~--i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.-.+.-..-+|||||++||.+. .||. |.+.|+.++...+ +..-.+.-..=.|+|||+. ++++.+..|.-.||
T Consensus 235 ~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~ 309 (425)
T COG0823 235 NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIY 309 (425)
T ss_pred ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceE
Confidence 1233444568999999998764 4555 6666777765322 3333333346789999997 44555666654555
Q ss_pred --ecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc-Cc--EEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-GK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 481 --d~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
|.+|.....+....+.-..-.+ ++||++++..+.. |. |.+.|+.+... ..............+.++|+.++.
T Consensus 310 ~~~~~g~~~~riT~~~~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 310 LYDLEGSQVTRLTFSGGGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EECCCCCceeEeeccCCCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEE
Confidence 4666665555444333223344 4477787777643 44 55555555443 222223334455677888888877
Q ss_pred eee
Q 001190 556 CGT 558 (1128)
Q Consensus 556 ~~~ 558 (1128)
.+.
T Consensus 387 ~s~ 389 (425)
T COG0823 387 SSG 389 (425)
T ss_pred ecc
Confidence 653
No 356
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.78 E-value=0.0055 Score=65.80 Aligned_cols=291 Identities=17% Similarity=0.112 Sum_probs=138.6
Q ss_pred EEEEEecCcceEEEeec-cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeE
Q 001190 768 VRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1128)
Q Consensus 768 ~~l~~s~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1128)
+.=+|.+||+.|+.++. +|.-.+|-+ |+.+++..+..-. .........++++++.+
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QLTdg---~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQLTDG---PGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE---S---S-B-TTT-EE-TTSSEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEECccC---CCCCccceEEecCCCeE
Confidence 34467889987777665 666666644 4444443331111 11222245677888887
Q ss_pred EEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEc-CCCCCEEEEEe---C-------------------CCcEEEEec
Q 001190 847 MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFH-PQDNNIIAIGT---E-------------------DSTIHIYNV 902 (1128)
Q Consensus 847 a~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s-~~d~~~lasg~---~-------------------dg~v~iwd~ 902 (1128)
+... +..|+..|+.+++....+..+..-+....|. ..|+..++-.- . ...|..-|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 7665 5689999999998877776666655555554 22566554321 1 123555667
Q ss_pred ccceeeecccccccCeeEEEEcCCCCEEEEEc----CCCc-EEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCE
Q 001190 903 RVDEVKSKLKGHQKRITGLAFSTSLNILVSSG----ADAQ-LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 977 (1128)
Q Consensus 903 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~----~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 977 (1128)
.+|+....+. -..-+..+.|||....++.-+ .|.. -|||-+++..... .++. .......+..=-|.|||..
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v~--~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKVH--RRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS-----TTEEEEEEEE-TTSS-
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eeee--cCCCCcccccccccCCCCE
Confidence 7776544443 335567889999766555433 3332 3677665422111 1111 1111234455578999998
Q ss_pred EEEE-e-----cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCC----------------cEEEEe
Q 001190 978 MLVV-H-----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG----------------NIGVFD 1035 (1128)
Q Consensus 978 l~~~-~-----d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg----------------~i~vwd 1035 (1128)
+..- . +..|.-++..+++...... ......+.-++||++++-=+.|. -|++++
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~ 326 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGERRRLME-----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFD 326 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--EEEEEE-----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEE
T ss_pred EEEEeecCCCCceEEEeeCCCCCCceEEEe-----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEec
Confidence 8762 1 3457778888776533222 23455666778999776522332 567788
Q ss_pred cCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1036 ADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
++.++...-..-. .+-.++.+.....--...|+|++...|.++...|...|+=++
T Consensus 327 ~~~~~~~~l~~h~--~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 327 VEAGRFRKLARHD--TSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTTTEEEEEEE---------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cccCceeeeeecc--CcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 8877754322210 011112222222235689999655567778888887777443
No 357
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.78 E-value=0.07 Score=62.51 Aligned_cols=109 Identities=11% Similarity=0.010 Sum_probs=65.4
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCC-eEE----------EEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCT----------TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~i~----------~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
..++.++.++.|.-.|..+++....+..... .+. .+++ .+..++.+. .++.+.-.|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t----~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGT----LDARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEc----CCCEEEEEECCCCCEE
Confidence 3666677777777778877777776554221 111 1122 123455544 3788999999999998
Q ss_pred eEeccccCC---ceeE-EEEeCCCCEEEEEE------CCCcEEEEECCCCeeeEEEec
Q 001190 578 RTYAGFRKK---SNGV-VQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 578 ~~~~~~~~~---~v~~-~~~~~~~~~l~~~s------~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
-.+...... .+.+ -.+. +..++++. .+|.|+-+|.++|+.+.....
T Consensus 144 W~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 776532110 1111 1111 33555554 268999999999998877543
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.74 E-value=0.0098 Score=66.13 Aligned_cols=241 Identities=13% Similarity=0.157 Sum_probs=134.3
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcc----------------------------------------eeceee
Q 001190 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL----------------------------------------RQHSQI 447 (1128)
Q Consensus 408 ~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~----------------------------------------~~~~~~ 447 (1128)
.|+.+.|+++..-||+|...|.|.||.+...+.. ....-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5899999999999999999999999876532111 011122
Q ss_pred cccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCe-EEE--ecC------CCCCeEEEecc---CCCCc---cEEE
Q 001190 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK-LFN--FEG------HEAPVYSICPH---HKENI---QFIF 512 (1128)
Q Consensus 448 ~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~-~~~--~~~------h~~~v~~~~~~---~~~~~---~~l~ 512 (1128)
....++|++++.|.=| +++.|..+|.+.|.|..|.. ++. +.. ....|+++.|. ..+|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3346789999998666 79999999999999965543 333 222 23357777664 23333 5788
Q ss_pred EEeccCcEEEEecCC-CCceee------ecCCCCeEEEEE-EcCC-C--------------------CeEEEeeeccCCC
Q 001190 513 STAIDGKIKAWLYDT-MGSRVD------YDAPGHWCTTML-YSAD-G--------------------SRLFSCGTSKDGD 563 (1128)
Q Consensus 513 s~~~dg~i~~wd~~~-~~~~~~------~~~~~~~i~~~~-~s~~-g--------------------~~l~~~~~~~~~~ 563 (1128)
+|...|.+.+|.+.. ....+. ...+..+|..+. ++.+ | .++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999998752 222111 113334444443 3222 1 1344443 6
Q ss_pred ceEEEEeCCCCceeeEeccccCCceeEEEE-----eCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC--CCCcceEE
Q 001190 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQF-----DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLR 636 (1128)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 636 (1128)
..++++...+.+...+.....- ....+++ ...+..|++-..+|.++++.+..-+.+........ ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 7799999888777665552211 2233344 23456788888999999999999998888776421 11345667
Q ss_pred EcCCCCEEEEEEcCCcEEEEEc
Q 001190 637 FSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 637 ~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
++++|..++..+. ..+.++.+
T Consensus 314 is~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SS-SEEEEEEE
T ss_pred ECCCCCEEEEeCc-ccEEEEEE
Confidence 7888886665543 34444443
No 359
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.70 E-value=1.7e-05 Score=86.81 Aligned_cols=204 Identities=13% Similarity=0.180 Sum_probs=129.8
Q ss_pred CCcEEEEEEeCCCC-cEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEE
Q 001190 344 GSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (1128)
Q Consensus 344 ~~~V~~v~fspdg~-~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 421 (1128)
...+.|++..-+.+ -++++|..+|.|.+-.+.....- ...+..+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 44677777655433 58999999999999887643221 1234667888999999998 66777
Q ss_pred EEEe----CCCeEEEEEccCC--Ccceeceeecc-cccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCC
Q 001190 422 GVAF----TKHLIQLYSYAGS--NDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1128)
Q Consensus 422 as~~----~d~~i~vwd~~~~--~~~~~~~~~~~-h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~ 494 (1128)
|+|- .|..+.|||+.++ .+.... .+.+ ......+++|-.|.+ ++.+|...+.+.++|....+...-.-.+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnT 195 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNT 195 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhh
Confidence 7773 3567999999987 222111 1222 445567899998888 7889998999999993333222222223
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEe-cCCCCceeeecCCC-----CeEEEEEEcCCCC-eEEEeeeccCCCceEE
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWL-YDTMGSRVDYDAPG-----HWCTTMLYSADGS-RLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd-~~~~~~~~~~~~~~-----~~i~~~~~s~~g~-~l~~~~~~~~~~~~i~ 567 (1128)
..+..+.+.|- .+.++++-. ||.|-+|| ....+.......+. ..+..++|.|... .+++... ..++|+
T Consensus 196 k~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr 270 (783)
T KOG1008|consen 196 KYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR 270 (783)
T ss_pred hhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence 33444555442 234666555 99999999 33333222222221 2488999999654 3444443 477888
Q ss_pred EEeCC
Q 001190 568 EWNES 572 (1128)
Q Consensus 568 ~wd~~ 572 (1128)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 88865
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.65 E-value=0.11 Score=60.98 Aligned_cols=148 Identities=12% Similarity=0.083 Sum_probs=89.0
Q ss_pred cEEEEecccceeeecccccccCee---------EEEEcCCCC---EEEEEcCCCcEEEEECCCCcccceeEE--------
Q 001190 896 TIHIYNVRVDEVKSKLKGHQKRIT---------GLAFSTSLN---ILVSSGADAQLCVWSIDTWEKRKSVTI-------- 955 (1128)
Q Consensus 896 ~v~iwd~~~~~~~~~l~~h~~~V~---------~l~~s~d~~---~l~s~~~Dg~i~iwd~~~~~~~~~~~~-------- 955 (1128)
.|.-.|+++|+..-.++.....+. -+.+..+|+ .++.+.++|.+.+.|-.+|+.+.....
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 566678888888766654222221 223334666 778899999999999999987421100
Q ss_pred eec--CC------------------------CC-CCCccEEEEcCCCCEEEEEe--------------------------
Q 001190 956 HIP--AG------------------------KT-PTGDTRVQFNADQVRMLVVH-------------------------- 982 (1128)
Q Consensus 956 ~~~--~~------------------------~~-~~~v~~v~~s~d~~~l~~~~-------------------------- 982 (1128)
... .+ .. ...-..++++|+..++++..
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 000 00 00 00012256777666655421
Q ss_pred --------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 983 --------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 983 --------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
-+.+.-+|+.+++..-..... .+...-.+.-.|.+++.+..||.++.+|.+||+.+.....
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~----~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKED----FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCC----CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 134777888888776554432 1111111223566788888899999999999999998873
No 361
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.025 Score=56.66 Aligned_cols=239 Identities=16% Similarity=0.111 Sum_probs=146.8
Q ss_pred CCeeEEEeccCCC-eEEEEe-CCe-EEEEECCCceEEEEeeCCCCC--eeEEEEcCCCCCEEEEEeCC-----CcEEEEe
Q 001190 832 EAVPCIALSKNDS-YVMSAT-GGK-ISLFNMMTFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGTED-----STIHIYN 901 (1128)
Q Consensus 832 ~~v~~~~~s~dg~-~la~~~-dg~-i~vwd~~~~~~~~~~~~~~~~--v~~l~~s~~d~~~lasg~~d-----g~v~iwd 901 (1128)
.....++|+|.-. -++.+- -|+ ..++|..+.+...++....+. .-.=.||| ||.+|...-.| |.|-|||
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEe
Confidence 3445677887543 455554 355 788999888776665433322 22346899 89888765433 6799999
Q ss_pred cccc-eeeecccccccCeeEEEEcCCCCEEEEEcC------C------------CcEEEEECCCCcccceeEEeecCCCC
Q 001190 902 VRVD-EVKSKLKGHQKRITGLAFSTSLNILVSSGA------D------------AQLCVWSIDTWEKRKSVTIHIPAGKT 962 (1128)
Q Consensus 902 ~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~------D------------g~i~iwd~~~~~~~~~~~~~~~~~~~ 962 (1128)
...+ +.+.++..|.-.-..+.+.+||+.|+.+.. | -++.+.|..+|+.+....+.....
T Consensus 147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~-- 224 (366)
T COG3490 147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR-- 224 (366)
T ss_pred cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh--
Confidence 9855 667788888877889999999999887643 1 234556666666555444331111
Q ss_pred CCCccEEEEcCCCCEEEEEe------cCeEEEEecCCcccccccccCCC----CCCCeEEEEEeeCCCEEEEEe-cCCcE
Q 001190 963 PTGDTRVQFNADQVRMLVVH------ETQLAIYDASKMERIRQWTPQDA----LSAPISCAVYSCNSQLVFATF-CDGNI 1031 (1128)
Q Consensus 963 ~~~v~~v~~s~d~~~l~~~~------d~~i~v~d~~~~~~~~~~~~~~~----h~~~v~~l~~s~dg~~l~t~~-~dg~i 1031 (1128)
...++.+...+||+..+.+. |.-..|=-...++.+..+..... -..-|-+++..-+..+++..+ ..+..
T Consensus 225 ~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred hcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 15678889999998887753 11122222223333333222110 023456777776666666544 56678
Q ss_pred EEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEc
Q 001190 1032 GVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1032 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd 1090 (1128)
.+||..+|+++..-... +. -.++ + ..+=|+..+.+|.++++.
T Consensus 305 vi~da~tG~vv~~a~l~-----------da---aGva--~-~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 305 VIWDAATGAVVSEAALP-----------DA---AGVA--A-AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEEcCCCcEEeccccc-----------cc---ccce--e-ccCceEEecCCceEEecc
Confidence 89999999987765511 11 1122 1 234466777789988874
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.017 Score=61.65 Aligned_cols=219 Identities=14% Similarity=0.102 Sum_probs=127.0
Q ss_pred EEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc--
Q 001190 837 IALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-- 912 (1128)
Q Consensus 837 ~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-- 912 (1128)
..|.++...|+... .+.|.-|+..+++.. .+. +.+.+.++..-..++. |+++ +..+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~-Lv~~--~~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGR-LIAC--EHGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCe-EEEE--ccccEEEeccCCceeEEeccc
Confidence 45677777666665 688999999866442 232 2333344443331444 4433 3346677766554422221
Q ss_pred --cc-ccCeeEEEEcCCCCEEEEEcC------C---CcEEEEECC-CCcccceeEEeecCCCCCCCccEEEEcCCCCEEE
Q 001190 913 --GH-QKRITGLAFSTSLNILVSSGA------D---AQLCVWSID-TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 979 (1128)
Q Consensus 913 --~h-~~~V~~l~~s~d~~~l~s~~~------D---g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 979 (1128)
+. ...-+.+...|+|.+.++... + ..=.||-+. .+..+....... ...+.++||||++.+.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~------~~~NGla~SpDg~tly 178 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL------TIPNGLAFSPDGKTLY 178 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE------EecCceEECCCCCEEE
Confidence 11 134567788899988776444 1 112455555 333322221111 4567899999999888
Q ss_pred EEe--cCeEEEEecCC--cccccc--cccCCCCCCCeEEEEEeeCCCEEEEEecCC-cEEEEecCCCceEEEeCCCCCCC
Q 001190 980 VVH--ETQLAIYDASK--MERIRQ--WTPQDALSAPISCAVYSCNSQLVFATFCDG-NIGVFDADTLRLRCYIAPSTYLS 1052 (1128)
Q Consensus 980 ~~~--d~~i~v~d~~~--~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg-~i~vwd~~~~~~~~~~~~~~~~~ 1052 (1128)
.++ .+.|.-|+... +..... +.......+....++...+|.+.+++..+| .|.+|+.. |+++..+..+.
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--- 254 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--- 254 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC---
Confidence 876 47788777752 211111 111111256777888889999876555554 99999998 99999888431
Q ss_pred CcccCCCCccceEEEEEecCCCCEEEE
Q 001190 1053 PSVLNGSQTVYPLVVAAHPLEPNQFAI 1079 (1128)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~p~~~~~l~s 1079 (1128)
..+.+++|--.+.+.|..
T Consensus 255 ---------~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 255 ---------KRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred ---------CCCccceEeCCCcCEEEE
Confidence 344666765434444433
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.017 Score=64.88 Aligned_cols=209 Identities=14% Similarity=0.136 Sum_probs=147.1
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEE-EEe--CCCcEEEEeccccee
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA-IGT--EDSTIHIYNVRVDEV 907 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~la-sg~--~dg~v~iwd~~~~~~ 907 (1128)
.-..+++++++..+.... ++.|.+.|..+.+......-.. ....+++++ +++.+. +-. .++++.+.|-.+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345678889988665554 6889999988777776654322 667899999 554444 444 378999999999888
Q ss_pred eecccccccCeeEEEEcCCCCEEEEE-cCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--c-
Q 001190 908 KSKLKGHQKRITGLAFSTSLNILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E- 983 (1128)
Q Consensus 908 ~~~l~~h~~~V~~l~~s~d~~~l~s~-~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d- 983 (1128)
+.....-..+ ..++++|+|..+..+ ..++.|.+.|..+..... - ..............+.++|+|.++.+.. +
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G-SVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c-ccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 8775544345 899999999955544 478899999977754432 1 1000111125667899999999887753 2
Q ss_pred -CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEec-CCcEEEEecCCCceEEEeCCC
Q 001190 984 -TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC-DGNIGVFDADTLRLRCYIAPS 1048 (1128)
Q Consensus 984 -~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~ 1048 (1128)
+.+...|..++.....-..... . ....+.++|+|+++.+... .+.+.+-|..+......+...
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 5888888888777665222110 2 5667899999999998754 489999999998888776633
No 364
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.58 E-value=0.022 Score=58.65 Aligned_cols=201 Identities=9% Similarity=0.082 Sum_probs=112.0
Q ss_pred CCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 830 LEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
-...+..++|.|+.+.|++.. .+.|..++. +|+.++.+.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence 455699999999877666555 467888886 57888777533 35577889987 77777766678999999984321
Q ss_pred ------eeecc-----cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC---CcccceeEEee-c-CCCCCCCccEEE
Q 001190 907 ------VKSKL-----KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT---WEKRKSVTIHI-P-AGKTPTGDTRVQ 970 (1128)
Q Consensus 907 ------~~~~l-----~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~---~~~~~~~~~~~-~-~~~~~~~v~~v~ 970 (1128)
....+ ..+...+-+++|.+.++.|+.+-...-..||.+.. ........... . .......++.++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 11111 13445688999999988888777777777777764 22211111110 1 111125578899
Q ss_pred EcCCCCEEEE-Ee-cCeEEEEecCCcccccccccCCC------CCCCeEEEEEeeCCCEEEEEecCCcEEEE
Q 001190 971 FNADQVRMLV-VH-ETQLAIYDASKMERIRQWTPQDA------LSAPISCAVYSCNSQLVFATFCDGNIGVF 1034 (1128)
Q Consensus 971 ~s~d~~~l~~-~~-d~~i~v~d~~~~~~~~~~~~~~~------h~~~v~~l~~s~dg~~l~t~~~dg~i~vw 1034 (1128)
++|....|.+ ++ ...|..+| .+|+.+..+....+ .-...-.|+|.++|++ +..++-+..++|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E-EEEETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE-EEEcCCceEEEe
Confidence 9997655544 43 56788888 56666554443321 1245789999999974 455577766665
No 365
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.55 E-value=0.012 Score=60.59 Aligned_cols=191 Identities=12% Similarity=0.135 Sum_probs=108.8
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-.+.+..++|.|+.+.|+|+....+.|...+. +|+.+...+ +.+ .+..-.|++.-++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 44569999999997778888888888888886 467664311 333 35677888988888888
Q ss_pred EEeCCCeEEEEEccCCCc-c--eece--ee---cccccceeEEEEecCCCeEEEEEecCCCeEEEEecC----CCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSND-L--RQHS--QI---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS----GRKLFNF 490 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~-~--~~~~--~~---~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~----g~~~~~~ 490 (1128)
+--.++.+.+.++..... + .... .+ ..++..+-.++|.+.++. |+.+-......++... +..+...
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 776789999999844321 1 1101 11 135567999999999885 4445556566666622 2222111
Q ss_pred --------cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC---------CeEEEEEEcCCCCeE
Q 001190 491 --------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRL 553 (1128)
Q Consensus 491 --------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---------~~i~~~~~s~~g~~l 553 (1128)
......+.++++++. .+++++-......|..+|. .++....+.... ...-.++|.++|++.
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 123445788888876 5577888888888888883 444444443333 257789999999776
Q ss_pred EEe
Q 001190 554 FSC 556 (1128)
Q Consensus 554 ~~~ 556 (1128)
++.
T Consensus 237 Ivs 239 (248)
T PF06977_consen 237 IVS 239 (248)
T ss_dssp EEE
T ss_pred EEc
Confidence 665
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.52 E-value=0.012 Score=69.24 Aligned_cols=212 Identities=14% Similarity=0.114 Sum_probs=115.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEe------CCC--cEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCC-CcEEEE
Q 001190 872 PPASTFLAFHPQDNNIIAIGT------EDS--TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD-AQLCVW 942 (1128)
Q Consensus 872 ~~~v~~l~~s~~d~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~D-g~i~iw 942 (1128)
...+...+++| +|+.+|... .|+ .|.+++.. +.......+. ..+.-.|+|||+.|++.... ..+++.
T Consensus 349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 34678999999 777776655 244 45555542 2222222332 37889999999877776532 222332
Q ss_pred ECCCCcccceeEEeecCC--CCCCCccEEEEcCCCCEEEEEecCeEEE---EecCCcccccc-----cccCCCCCCCeEE
Q 001190 943 SIDTWEKRKSVTIHIPAG--KTPTGDTRVQFNADQVRMLVVHETQLAI---YDASKMERIRQ-----WTPQDALSAPISC 1012 (1128)
Q Consensus 943 d~~~~~~~~~~~~~~~~~--~~~~~v~~v~~s~d~~~l~~~~d~~i~v---~d~~~~~~~~~-----~~~~~~h~~~v~~ 1012 (1128)
+-.....+.......... .....+..+.|||||..++...++.|++ -....|. ... +... ....+.+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~--l~~~~~~ 501 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPG--LGDTAVS 501 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecc--cCCcccc
Confidence 221111111111110000 1125799999999999999877888877 4444443 111 1111 1334688
Q ss_pred EEEeeCCCEEEEEecCCcEEEEecCC-CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcC
Q 001190 1013 AVYSCNSQLVFATFCDGNIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1013 l~~s~dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
+.|..++.++ ++..++...+|.+.- |.....+. . ......+.+|+-.+ ..+..+..+|.+.+=.-
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~-~---------~n~~~~v~~vaa~~---~~iyv~~~~g~~~l~~~ 567 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALP-S---------RNLSAPVVAVAASP---STVYVTDARAVLQLPNS 567 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccC-C---------CCccCceEEEecCC---ceEEEEcCCceEEecCC
Confidence 9999999955 555555555665432 22211111 0 11123346677665 24666677775554433
Q ss_pred CCCCCCcccCCCC
Q 001190 1092 SESEGKWGVSPPV 1104 (1128)
Q Consensus 1092 ~~~~~~w~~~~p~ 1104 (1128)
.+++.-|-+-+++
T Consensus 568 ~~~~~~W~ev~~l 580 (591)
T PRK13616 568 DSGDQYWREVPGL 580 (591)
T ss_pred CCCCCCceECccc
Confidence 4445568876665
No 367
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00064 Score=71.27 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC----------HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHH
Q 001190 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFF 74 (1128)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~ 74 (1128)
.+.+..+|..|+...|..+.+..|-+|+|...+ +..+-++|.+|+-.-|++.+......-.+.. ..+-|
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~-s~LE~ 194 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS-SSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc-ccHHH
Confidence 344689999999999999999999999998753 7889999999999999999876421111111 23889
Q ss_pred HHHHhHHhHhhccCCHH--HHHHHHHhhcccccccCHHHHHHHHHh
Q 001190 75 EIRKQKYLEALDRQDKA--KAVDILVNDLKVFSTFNEELFKEITQL 118 (1128)
Q Consensus 75 ~i~~~~~~ell~~~~~~--~a~~~l~~~~~~~~~~~~~~~~~l~~l 118 (1128)
.+..+.|++++..|... +|+...|+.++|+.......++.+-..
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~s 240 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGS 240 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHH
Confidence 99999999999999877 999999999999965554555555443
No 368
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.52 E-value=0.028 Score=60.44 Aligned_cols=234 Identities=13% Similarity=0.123 Sum_probs=134.6
Q ss_pred cCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCe
Q 001190 774 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK 853 (1128)
Q Consensus 774 ~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~ 853 (1128)
..++.|+.|+.+| +.++++... ...... .+...|..+...++-+.+++-+|+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~----------------------~~~~~i----~~~~~I~ql~vl~~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP----------------------SKPTRI----LKLSSITQLSVLPELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC----------------------ccceeE----eecceEEEEEEecccCEEEEEcCCc
Confidence 4567788888888 777765110 000000 1334499999999999999889999
Q ss_pred EEEEECCCceEEEEe--------------eCCCCCeeEEE--EcCCCCCEEEEEeCCCcEEEEecccc-----eeeeccc
Q 001190 854 ISLFNMMTFKVMTTF--------------MSPPPASTFLA--FHPQDNNIIAIGTEDSTIHIYNVRVD-----EVKSKLK 912 (1128)
Q Consensus 854 i~vwd~~~~~~~~~~--------------~~~~~~v~~l~--~s~~d~~~lasg~~dg~v~iwd~~~~-----~~~~~l~ 912 (1128)
+.++++......... ......+...+ -...+...|+++. ..+|.+|..... +..+++.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence 999999765544311 11222344444 1122444555444 558888887653 3445554
Q ss_pred ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecC-----CCCCCCccEEEEcCCCCEEEEEecCeEE
Q 001190 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA-----GKTPTGDTRVQFNADQVRMLVVHETQLA 987 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~s~d~~~l~~~~d~~i~ 987 (1128)
-.+.+..++|. ++.++.+..+ ...+.|+.++............ .........+.--+++.+|++.+ . +.
T Consensus 137 -lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~-~-~g 210 (275)
T PF00780_consen 137 -LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD-N-IG 210 (275)
T ss_pred -cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec-c-eE
Confidence 33778899998 4567766654 4888999977653332211111 00001222233333455555433 2 33
Q ss_pred EEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
+|=-..|+..+.....- .....++++. ..||+..+. +.|.||++.+++++..+.
T Consensus 211 ~fv~~~G~~~r~~~i~W--~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 211 VFVNKNGEPSRKSTIQW--SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEcCCCCcCcccEEEc--CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 33333454444111111 3455666663 457777654 569999999999988887
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.51 E-value=0.062 Score=61.82 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=128.0
Q ss_pred eeEEEeccCCCeEEEEe--CC----eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC-----------Cc
Q 001190 834 VPCIALSKNDSYVMSAT--GG----KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-----------ST 896 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~--dg----~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d-----------g~ 896 (1128)
+....+||||+++|.+- +| .++++|+++++.+...-.. .....+.|.+ +++.++....+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeC-CCCEEEEEEeCcccccccCCCCcE
Confidence 44678999999998773 33 3999999999876543111 1223499999 76666555432 23
Q ss_pred EEEEecccceee--ecccccccC--eeEEEEcCCCCEEEEEcC---C-CcEEEEECCCC--cccceeEEeecCCCCCCCc
Q 001190 897 IHIYNVRVDEVK--SKLKGHQKR--ITGLAFSTSLNILVSSGA---D-AQLCVWSIDTW--EKRKSVTIHIPAGKTPTGD 966 (1128)
Q Consensus 897 v~iwd~~~~~~~--~~l~~h~~~--V~~l~~s~d~~~l~s~~~---D-g~i~iwd~~~~--~~~~~~~~~~~~~~~~~~v 966 (1128)
|+.|++.+...- ..+...... ...+..++|+++|+.... + ..+.+.++..+ .......+.... ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~----~~~ 279 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE----DGV 279 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS----SS-
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC----Cce
Confidence 788888765322 334433333 568889999998775332 2 34778888775 111122222111 222
Q ss_pred cEEEEcCCCCEEEEEe----cCeEEEEecCCcccc--c-ccccCCCCCCCeEEEEEeeCCCEEEEEe-cCC--cEEEEec
Q 001190 967 TRVQFNADQVRMLVVH----ETQLAIYDASKMERI--R-QWTPQDALSAPISCAVYSCNSQLVFATF-CDG--NIGVFDA 1036 (1128)
Q Consensus 967 ~~v~~s~d~~~l~~~~----d~~i~v~d~~~~~~~--~-~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg--~i~vwd~ 1036 (1128)
....-+..+.+++.+. .+.|...++.+.... . .+..+ ...+.-..+...+.+|+... .++ .|+++++
T Consensus 280 ~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~---~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 280 EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE---DEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC---CCceeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence 2222223444444442 467777787776531 1 22222 34333334444566666543 444 5889999
Q ss_pred CCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC---CcEEEEcCCCCCC
Q 001190 1037 DTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD---GSVKVMEPSESEG 1096 (1128)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d---g~i~iWd~~~~~~ 1096 (1128)
..+.....+... ..+.+..+...+....++++.++- +++.-+|+.+++.
T Consensus 357 ~~~~~~~~~~~p-----------~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 357 DDGKESREIPLP-----------EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp T-TEEEEEEESS-----------SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCCcEEeeecCC-----------cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 834444433321 122234454445434444444433 3577778887764
No 370
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.51 E-value=0.01 Score=65.33 Aligned_cols=175 Identities=15% Similarity=0.189 Sum_probs=104.4
Q ss_pred CeEEEEECCCceEEEEeeCCCC-CeeEE---EEcCC---CCCEEEEEeC----------CCcEEEEecccc----eeeec
Q 001190 852 GKISLFNMMTFKVMTTFMSPPP-ASTFL---AFHPQ---DNNIIAIGTE----------DSTIHIYNVRVD----EVKSK 910 (1128)
Q Consensus 852 g~i~vwd~~~~~~~~~~~~~~~-~v~~l---~~s~~---d~~~lasg~~----------dg~v~iwd~~~~----~~~~~ 910 (1128)
..|++.|..+.+.+.++.-... .+.++ .+..+ ...++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888888877766553322 34443 33321 1568887762 288999999884 12221
Q ss_pred c--cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCc-ccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeE
Q 001190 911 L--KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE-KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQL 986 (1128)
Q Consensus 911 l--~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i 986 (1128)
+ ....++|++++-- +++++++. .+.|.+|++...+ ........ .....+.....+.++++++ ...+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~-------~~~~i~sl~~~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYD-------SPFYITSLSVFKNYILVGDAMKSV 151 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE--------BSSSEEEEEEETTEEEEEESSSSE
T ss_pred EEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheec-------ceEEEEEEeccccEEEEEEcccCE
Confidence 1 2346889998876 44444433 4789999999877 32222222 2223334444456888887 6777
Q ss_pred EEEecCC-cccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 987 AIYDASK-MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 987 ~v~d~~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
.++.... ...+..+.. +.....++++.|-.|++.++++..+|.+.++...
T Consensus 152 ~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 7775543 222322222 2225678999998777899999999999999886
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.46 E-value=0.0063 Score=71.45 Aligned_cols=189 Identities=11% Similarity=0.057 Sum_probs=108.0
Q ss_pred CCeeEEEeccCCCeEEEEe-------CC--eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC--------
Q 001190 832 EAVPCIALSKNDSYVMSAT-------GG--KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-------- 894 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~-------dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d-------- 894 (1128)
..+.+.++||||+.++... |. .|.+++.. +.......+ ...+...|+| +|+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3578899999999887664 32 36666652 333222222 2488999999 77766665422
Q ss_pred ----CcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEE---EECCCCcccceeEEeecCCCCCCCcc
Q 001190 895 ----STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCV---WSIDTWEKRKSVTIHIPAGKTPTGDT 967 (1128)
Q Consensus 895 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~v~ 967 (1128)
+.+.+.+++.++... ...+.|..+.|||||++++... ++.|.+ -....|+............ ....+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~-l~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG-LGDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc-cCCccc
Confidence 334444555444332 2346799999999999888766 477777 4444554211111111111 113357
Q ss_pred EEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcE
Q 001190 968 RVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1031 (1128)
Q Consensus 968 ~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i 1031 (1128)
.+.|.+++.+++...++...+|.+.-...........+...++.+++-+++ -++.+..+|.+
T Consensus 501 ~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 899999999765554444455655533332222122122566777776653 35555556633
No 372
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.069 Score=60.06 Aligned_cols=242 Identities=14% Similarity=0.170 Sum_probs=155.2
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
....+++.+++..+.... .+.+...+................-..+++++.+.+..+....++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 455678888886655554 334555555422222212211134567788884455777777789999999877766654
Q ss_pred ccccccCeeEEEEcCCCCEEEEEcC---CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCe
Q 001190 911 LKGHQKRITGLAFSTSLNILVSSGA---DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQ 985 (1128)
Q Consensus 911 l~~h~~~V~~l~~s~d~~~l~s~~~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~ 985 (1128)
..--. .-..++++++++.+..+.. ++++.+.|-.+++........ .....++++|+|..+.+.. ++.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-------~~P~~~a~~p~g~~vyv~~~~~~~ 183 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-------NTPTGVAVDPDGNKVYVTNSDDNT 183 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-------CCcceEEECCCCCeEEEEecCCCe
Confidence 43222 4568999999976665544 688888888887766553332 1237899999999888865 899
Q ss_pred EEEEecCCccccccccc--CCCCCCCeEEEEEeeCCCEEEEEecC---CcEEEEecCCCceEEEeCCCCCCCCcccCCCC
Q 001190 986 LAIYDASKMERIRQWTP--QDALSAPISCAVYSCNSQLVFATFCD---GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1060 (1128)
Q Consensus 986 i~v~d~~~~~~~~~~~~--~~~h~~~v~~l~~s~dg~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1128)
+.+.|.......+ ... ...-...-..+.+++||+++.+.... +.+.+.|..++......... ..
T Consensus 184 v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~----------~~ 252 (381)
T COG3391 184 VSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV----------GS 252 (381)
T ss_pred EEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc----------cc
Confidence 9999977665553 110 01114455688999999977765544 58999999998887763321 11
Q ss_pred ccceEEEEEecCCCCEEEEE-ECCCcEEEEcCCCCC
Q 001190 1061 TVYPLVVAAHPLEPNQFAIG-LTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1061 ~~~~~~~~~~p~~~~~l~s~-~~dg~i~iWd~~~~~ 1095 (1128)
. .+..+..+| ++..+... +..+.+.+-|..+..
T Consensus 253 ~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 253 G-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred C-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence 1 345677778 45555444 444677777766543
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.45 E-value=0.011 Score=70.24 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=98.3
Q ss_pred CCCEEEEE-eCCCcEEEEecccceeeecccccccC-eeEEEEcCCC-------CEEEEEcCCCcEEEEECCCCcccceeE
Q 001190 884 DNNIIAIG-TEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSL-------NILVSSGADAQLCVWSIDTWEKRKSVT 954 (1128)
Q Consensus 884 d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~-------~~l~s~~~Dg~i~iwd~~~~~~~~~~~ 954 (1128)
+..+|+.. .....|+-.|+..|+.+..+..|... |..+ .|+. ..-+.|-.+..+..||..-... ....
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCC-ceee
Confidence 44554443 35678999999999999999988654 5444 4432 2334466678899999875321 1111
Q ss_pred EeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEE
Q 001190 955 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1034 (1128)
Q Consensus 955 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vw 1034 (1128)
.....-......++++-+.+|..++.+.+|.|++||- .|..-++..+ +.+.+|..|..+.||+||++.+ +.++.++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALP--GLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCC--CCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 1111112236778888888888777777999999994 3333222222 2279999999999999998765 7788888
Q ss_pred ecC
Q 001190 1035 DAD 1037 (1128)
Q Consensus 1035 d~~ 1037 (1128)
+..
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 863
No 374
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.37 E-value=0.16 Score=57.62 Aligned_cols=167 Identities=11% Similarity=0.136 Sum_probs=92.3
Q ss_pred eEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-------CCCCeEEEEEEcC
Q 001190 476 LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSA 548 (1128)
Q Consensus 476 ~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-------~~~~~i~~~~~s~ 548 (1128)
.|+||+..|+.+.++.-..+.|.++.|..+ ..|+....||.++++|+.... ...+. .....+....+..
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~---e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD---EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC---CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 588999889888777655589999999653 467788899999999985333 11111 1111222333444
Q ss_pred CCCeEEEeeeccCCCceEEEEeCCCCc-eeeEe---ccccC-----Ccee-EEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 549 DGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTY---AGFRK-----KSNG-VVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 549 ~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~---~~~~~-----~~v~-~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
+|-.+++. ++.+++.+-.... ..+.+ .+... .... ...++.+....+....++.+++.+....+
T Consensus 138 ~GivvLt~------~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 138 NGIVVLTG------NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred CCEEEECC------CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 55333332 3344443322211 11111 11000 0011 02234444444444555555544433221
Q ss_pred eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
. +. ..+++..+++||+++++|.-..+|.+.+.+.
T Consensus 212 ~---i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 212 Q---ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred c---cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 1 11 1236899999999999999999999888754
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.34 E-value=0.06 Score=57.94 Aligned_cols=224 Identities=15% Similarity=0.151 Sum_probs=125.4
Q ss_pred cCCCeEEEEeCCeEEEEECC-CceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc--------
Q 001190 841 KNDSYVMSATGGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-------- 911 (1128)
Q Consensus 841 ~dg~~la~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-------- 911 (1128)
..++.|+.|.++.+.+++.. ..+..... +...|..+...+ +-+.|++-+ |+.++++++..-.....-
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~--~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRIL--KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEe--ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 46778888885449999993 33333333 233499999999 555555554 599999999864433211
Q ss_pred ------cccccCeeEEE--EcCCCCEEEEEcCCCcEEEEECCCCccc---ceeEEeecCCCCCCCccEEEEcCCCCEEEE
Q 001190 912 ------KGHQKRITGLA--FSTSLNILVSSGADAQLCVWSIDTWEKR---KSVTIHIPAGKTPTGDTRVQFNADQVRMLV 980 (1128)
Q Consensus 912 ------~~h~~~V~~l~--~s~d~~~l~s~~~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 980 (1128)
......+...+ -...+...+.+...+.|.+|........ ....+.. +..+..++|. +..+++
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-----p~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-----PDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-----CCCcEEEEEe--CCEEEE
Confidence 11223344444 1123333333444568999988764211 1111111 1678888888 667888
Q ss_pred EecCeEEEEecCCcccccccccCCC---------CCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEE--EeCCCC
Q 001190 981 VHETQLAIYDASKMERIRQWTPQDA---------LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC--YIAPST 1049 (1128)
Q Consensus 981 ~~d~~i~v~d~~~~~~~~~~~~~~~---------h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~--~~~~~~ 1049 (1128)
+..+...+.|+.++.....+..... ...++..+.. +++.+|++- |. +-+|=-..|+... .+.
T Consensus 154 ~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~-~g~fv~~~G~~~r~~~i~--- 226 (275)
T PF00780_consen 154 GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DN-IGVFVNKNGEPSRKSTIQ--- 226 (275)
T ss_pred EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cc-eEEEEcCCCCcCcccEEE---
Confidence 8788899999997766444332211 0223444444 346666653 22 3333223444322 111
Q ss_pred CCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1050 YLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
.. ..+..+++.. .++++.+. +.|.||++.+++.
T Consensus 227 --------W~--~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 227 --------WS--SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred --------cC--CchhEEEEEC---CEEEEECC-CEEEEEECcCCcE
Confidence 11 1345566643 35555554 5599999999864
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.29 E-value=0.038 Score=56.33 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=118.1
Q ss_pred CeeEEEeccCCCeEEEEe-CC--eEEEEECCCceEEEEeeCCCCC-eeEEEEcCCCCCEEEEEeCCCcEEEEecccceee
Q 001190 833 AVPCIALSKNDSYVMSAT-GG--KISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 908 (1128)
-...+.|..+|.++-+.+ -| .|+.+|+.+++......-...- =-.++.. ++++....-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 355788878888877766 44 4999999999987665533221 1233333 4566667778999999999999888
Q ss_pred ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEE
Q 001190 909 SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAI 988 (1128)
Q Consensus 909 ~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v 988 (1128)
.++.- .+.-++++ .|++.|+.......|.++|..+.+....+. |
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~---------------------------------V 167 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ---------------------------------V 167 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE----------------------------------
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE---------------------------------E
Confidence 88763 46777887 456666666556779999988755433222 2
Q ss_pred EecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccC---CCCccceE
Q 001190 989 YDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN---GSQTVYPL 1065 (1128)
Q Consensus 989 ~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 1065 (1128)
.+ .+.. -..++-+.|- +|...|=.=....|..-|.++|++...+....-....... +....-..
T Consensus 168 ~~--~g~p----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN 234 (264)
T PF05096_consen 168 TD--NGRP----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN 234 (264)
T ss_dssp EE--TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE
T ss_pred EE--CCEE----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE
Confidence 21 1121 2234455553 6665555556778888999999999888632211110000 01122357
Q ss_pred EEEEecCCCCEEEEE
Q 001190 1066 VVAAHPLEPNQFAIG 1080 (1128)
Q Consensus 1066 ~~~~~p~~~~~l~s~ 1080 (1128)
.|||.|..+.+++||
T Consensus 235 GIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 235 GIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred eEeEeCCCCEEEEEe
Confidence 899999766677776
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.08 Score=56.66 Aligned_cols=221 Identities=15% Similarity=0.111 Sum_probs=133.4
Q ss_pred EEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeE
Q 001190 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1128)
Q Consensus 351 ~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i 430 (1128)
.|.|++..++.+--..+.|.-|+..+|+... + .+.+.+.++..-.++..|+++.. .+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~-~~p~~~~~~~~~d~~g~Lv~~~~--g~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------F-PSPGGFSSGALIDAGGRLIACEH--GV 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------E-ECCCCcccceeecCCCeEEEEcc--cc
Confidence 4566767677777778899999988775431 1 13344555555555556655533 36
Q ss_pred EEEEccCCCcceeceeec-cc-ccceeEEEEecCCCeEEEEEecCC------------CeEEEEecCCCeEEEecCCCCC
Q 001190 431 QLYSYAGSNDLRQHSQID-AH-VGAVNDLAFAYPNKLLCVVTCGDD------------KLIKVWELSGRKLFNFEGHEAP 496 (1128)
Q Consensus 431 ~vwd~~~~~~~~~~~~~~-~h-~~~v~~l~fs~d~~~~~l~s~s~d------------~~i~vWd~~g~~~~~~~~h~~~ 496 (1128)
.+++.+++.....+.... +. ...-+.+...|+|. +.+ +... |.|+..|..|..+..+..+-..
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 777877665433222111 22 24667889999998 333 3322 2333333456666666666556
Q ss_pred eEEEeccCCCCccEEEEEec-cCcEEEEecCC-----CCc--eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 497 VYSICPHHKENIQFIFSTAI-DGKIKAWLYDT-----MGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~-----~~~--~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
-+.++|+| |++.++.+.. .+.|.-|+++. ... ........+..-.++...+|.+-+++.. +.+.|.+
T Consensus 165 ~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~ 239 (307)
T COG3386 165 PNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVR 239 (307)
T ss_pred cCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEE
Confidence 68899987 5556666544 47888887763 111 1222233445566777888887754432 2348999
Q ss_pred EeCCCCceeeEeccccCCceeEEEEe-CCCCEEEEEE
Q 001190 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s 604 (1128)
|+.. |+++..+..... .+++++|. ++.+.|++.+
T Consensus 240 ~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 240 FNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 9988 999988887754 56677775 4455555554
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.25 E-value=0.064 Score=59.44 Aligned_cols=82 Identities=12% Similarity=0.225 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCC-----------------E-EE
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-----------------H-FL 601 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~-l~ 601 (1128)
.+.+++.+|++++.++. |.-|+|.++|+.++..++.++|..+..+.-+.....+. + ++
T Consensus 309 ~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred eEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 57889999998876664 36889999999999999999998875444332222111 2 23
Q ss_pred EEECCCcEEEEECCCCeeeEEEec
Q 001190 602 AVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 602 ~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
.+-.-|.|.||++.+|..+..+..
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 355789999999999988877764
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.02 Score=57.28 Aligned_cols=191 Identities=10% Similarity=0.080 Sum_probs=115.6
Q ss_pred EEeccCCCeEEEEe-C-----CeEEEEECCCc-eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeC----------------
Q 001190 837 IALSKNDSYVMSAT-G-----GKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---------------- 893 (1128)
Q Consensus 837 ~~~s~dg~~la~~~-d-----g~i~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~---------------- 893 (1128)
=+|||||.+|.... | |.|-|||...+ +.+.++..|.-.-..+.+.+ ||+.++.+..
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchh
Confidence 47999999998774 2 66999998743 55677888888888999999 8998887642
Q ss_pred --CCcEEEEecccceeeec--cc--ccccCeeEEEEcCCCCEEEEEcCCCc-----EEEEECCCCcccceeEEeecC-CC
Q 001190 894 --DSTIHIYNVRVDEVKSK--LK--GHQKRITGLAFSTSLNILVSSGADAQ-----LCVWSIDTWEKRKSVTIHIPA-GK 961 (1128)
Q Consensus 894 --dg~v~iwd~~~~~~~~~--l~--~h~~~V~~l~~s~d~~~l~s~~~Dg~-----i~iwd~~~~~~~~~~~~~~~~-~~ 961 (1128)
.-++.+.|..+|+++.+ +. .+.-.|..++..+||+.++-+-..|. --+=-...++..+.+...... ..
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 11344555556655533 22 35567888999888887765432221 111111122222111111000 00
Q ss_pred CCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEe
Q 001190 962 TPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 962 ~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
....+-+|+...+..+++..+ .+...+||..+|..+..-...+ +.-.-+...=+++.+.+|.+..+.
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-------aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-------AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-------cccceeccCceEEecCCceEEecc
Confidence 004567788887777777654 6788999999999887655432 111223333345555678887773
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.06 E-value=0.16 Score=56.35 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=57.9
Q ss_pred EEEeccCCCeEEEEeCCeEE----EEECC-----CceEEEEee----CCC-CCeeEEEEcCC----------CCCEEEEE
Q 001190 836 CIALSKNDSYVMSATGGKIS----LFNMM-----TFKVMTTFM----SPP-PASTFLAFHPQ----------DNNIIAIG 891 (1128)
Q Consensus 836 ~~~~s~dg~~la~~~dg~i~----vwd~~-----~~~~~~~~~----~~~-~~v~~l~~s~~----------d~~~lasg 891 (1128)
.++.+|++++||.+..+++. -|+.. .+....... ... ..|+++.+-|- |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 56889999999999865533 35331 122222222 111 45777665441 56899999
Q ss_pred eCCCcEEEEecccceeeecccccccCeeEEEEc
Q 001190 892 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 924 (1128)
Q Consensus 892 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 924 (1128)
..+|.|++|.- +|.++..-.-|.++|..+.+-
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999985 676666655678888777764
No 381
>PHA02713 hypothetical protein; Provisional
Probab=96.96 E-value=0.035 Score=65.74 Aligned_cols=228 Identities=13% Similarity=0.056 Sum_probs=118.5
Q ss_pred eEEEEECCCceEEE--EeeCCCCCeeEEEEcCCCCCEEEEEeCC------CcEEEEeccccee--eecccccccCeeEEE
Q 001190 853 KISLFNMMTFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGTED------STIHIYNVRVDEV--KSKLKGHQKRITGLA 922 (1128)
Q Consensus 853 ~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~V~~l~ 922 (1128)
.+..||..+.+-.. .+..... -.+++.. ++.+++.|+.+ ..+..||..+..- +..+....... ..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eE
Confidence 46677877654322 2211111 1223332 67788888854 3477888776532 22222111111 22
Q ss_pred EcCCCCEEEEEcCCC-----cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-c-------------
Q 001190 923 FSTSLNILVSSGADA-----QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E------------- 983 (1128)
Q Consensus 923 ~s~d~~~l~s~~~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d------------- 983 (1128)
..-+|+..+.||.++ .+..||..+.+-. ......... .....+ .-+|+..++|+ +
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~---~~~~mp~~r-~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK---MLPDMPIAL-SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCeEE---ECCCCCccc-ccccEE--EECCEEEEEeCCCccccccccccccc
Confidence 233678888888764 4788998765321 111111000 111112 23566666653 2
Q ss_pred ----------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC------CcEEEEecCC-CceEEEeC
Q 001190 984 ----------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD------GNIGVFDADT-LRLRCYIA 1046 (1128)
Q Consensus 984 ----------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d------g~i~vwd~~~-~~~~~~~~ 1046 (1128)
..+..||..+.+-...-... ......-+..-+|++.+.|+.+ ..+..||.++ .+-. .+.
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~~m~---~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~-~~~ 497 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLPNFW---TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE-LIT 497 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecCCCC---cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee-Ecc
Confidence 24777887766442221111 1111222234467777777654 2467899887 4432 222
Q ss_pred CCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCC--cEEEEcCCCCCCCcccCCCCCCCcc
Q 001190 1047 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG--SVKVMEPSESEGKWGVSPPVDNGIL 1109 (1128)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg--~i~iWd~~~~~~~w~~~~p~~~~~~ 1109 (1128)
. ++... .. .+++.. ++.+.++||.|| .+-.+|+.+.+ |....|.-++++
T Consensus 498 ~---m~~~r---~~----~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~~~ 548 (557)
T PHA02713 498 T---TESRL---SA----LHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSNSY 548 (557)
T ss_pred c---cCccc---cc----ceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhcCCce
Confidence 1 11111 11 122222 678999999999 78889999876 999998877655
No 382
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.023 Score=61.91 Aligned_cols=139 Identities=11% Similarity=0.103 Sum_probs=96.9
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEE-----EEEecCCCeEEEEe--cCCC-eEEEecCC
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC-----VVTCGDDKLIKVWE--LSGR-KLFNFEGH 493 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~-----l~s~s~d~~i~vWd--~~g~-~~~~~~~h 493 (1128)
.++.....++-.|++.|+.+.. ..-|.. |+-+.+.|+.+.-. -+.|-.|+.|+-|| ..|. .+..-.+|
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeE---Wk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEE---WKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eCCCCcCcceeeecccceeeeE---eeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 3455556688889999987763 444555 78888888754211 23466688999999 5665 33333444
Q ss_pred C----CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEE
Q 001190 494 E----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1128)
Q Consensus 494 ~----~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~w 569 (1128)
+ ....|.+- .++ .++++|+.+|.||+||--.......+.+-+.+|..+..+.||++|++.+ +..+.+.
T Consensus 426 qy~~k~nFsc~aT--T~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~tyLlLi 497 (644)
T KOG2395|consen 426 QYSTKNNFSCFAT--TES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----KTYLLLI 497 (644)
T ss_pred ccccccccceeee--cCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----ccEEEEE
Confidence 3 23445443 334 4899999999999998744455556788888999999999999999876 6677777
Q ss_pred eCC
Q 001190 570 NES 572 (1128)
Q Consensus 570 d~~ 572 (1128)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 653
No 383
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.89 E-value=0.11 Score=57.34 Aligned_cols=216 Identities=15% Similarity=0.138 Sum_probs=117.2
Q ss_pred CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC----CCEEEEEeC----------CCeEEE
Q 001190 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----GNYVGVAFT----------KHLIQL 432 (1128)
Q Consensus 367 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~las~~~----------d~~i~v 432 (1128)
+.|+|.|..+.+.+....+. -..+-..+..+.|..+ ..+|++|+. .|.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 35778887777665432221 0111122333444433 468887753 288999
Q ss_pred EEccCC----CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecC--CCCCeEEEeccCC
Q 001190 433 YSYAGS----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG--HEAPVYSICPHHK 505 (1128)
Q Consensus 433 wd~~~~----~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~--h~~~v~~~~~~~~ 505 (1128)
+++... ..++.... ....++|++++-. +|. ++++. .+.|.+|+ ...+.+..... ....+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999884 23333222 2457889999877 443 34433 48899999 44441322222 23356666653
Q ss_pred CCccEEEEEeccCcEEEEecCCCCceee---ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC-------C-
Q 001190 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-------G- 574 (1128)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-------~- 574 (1128)
+.+++.|...+.+.++.++....... .......++++.|-++++.++++- .++.+.++.... +
T Consensus 139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-SS-SSTTTTT
T ss_pred --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEECCCCccccccc
Confidence 34899999889998886665333222 223455789999987776555543 588888887652 1
Q ss_pred -ceeeEeccccCCceeEE---EEeC--CC------CEEEEEECCCcEEE
Q 001190 575 -TIKRTYAGFRKKSNGVV---QFDT--TQ------NHFLAVGEDSQIKF 611 (1128)
Q Consensus 575 -~~~~~~~~~~~~~v~~~---~~~~--~~------~~l~~~s~dg~i~i 611 (1128)
++.....-|-+..+.++ ++.| .+ ..++.++.+|.|.+
T Consensus 213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 23333334444455555 3333 11 13666777777763
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.89 E-value=0.72 Score=49.12 Aligned_cols=159 Identities=9% Similarity=0.055 Sum_probs=82.8
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc
Q 001190 870 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949 (1128)
Q Consensus 870 ~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~ 949 (1128)
...+.+..+..++ |+++++++.......-||--...-...-+.-+.+|.++.|+|++.+.+.+ ..|.|+.=+.....
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~- 218 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG- 218 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE-
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc-
Confidence 3456788888898 99999888655555667643221111222245789999999998876644 78888887722111
Q ss_pred cceeEEeecCC-CCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC
Q 001190 950 RKSVTIHIPAG-KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD 1028 (1128)
Q Consensus 950 ~~~~~~~~~~~-~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d 1028 (1128)
.......... ...-.+..++|.+++...+++..+.+ +.....|+.-..-............+.|.++.+-++.| .+
T Consensus 219 -~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~ 295 (302)
T PF14870_consen 219 -ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QD 295 (302)
T ss_dssp -EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--ST
T ss_pred -cccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CC
Confidence 1111111111 11244788999999888888777744 44555555433333222226678999998776655555 68
Q ss_pred CcEEEE
Q 001190 1029 GNIGVF 1034 (1128)
Q Consensus 1029 g~i~vw 1034 (1128)
|.|.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 887655
No 385
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0042 Score=68.96 Aligned_cols=94 Identities=18% Similarity=0.339 Sum_probs=71.6
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceE-EEEEccCCCEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS-RVAWSPDGNYVG 422 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~la 422 (1128)
...|.-+.|+|.-. ++|++..+|.|.|..+. -+.+.. +.-|.-.++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwt-------------------ip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWT-------------------IPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEe-------------------ccCCCCccceeeeecCCCCEEE
Confidence 34688899999987 89999999999999887 333322 333555666 999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA 460 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs 460 (1128)
.|-.||+|++-|+++|..+... ...-...|.++-|.
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 9999999999999998766532 12234556666665
No 386
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0049 Score=68.44 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=78.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCee-EEEEcCCCCEEEEEcCCCcEEEEECCCCccc
Q 001190 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT-GLAFSTSLNILVSSGADAQLCVWSIDTWEKR 950 (1128)
Q Consensus 872 ~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~ 950 (1128)
...+.-+.|+| .-.++|.+..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34577889999 88899999999999999988 777888887777787 9999999999999999999999999998876
Q ss_pred ceeEEeecCCCCCCCccEEEEc
Q 001190 951 KSVTIHIPAGKTPTGDTRVQFN 972 (1128)
Q Consensus 951 ~~~~~~~~~~~~~~~v~~v~~s 972 (1128)
...... ....+..+.|+
T Consensus 98 ~~~~~s-----~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFS-----VETDISKGIWD 114 (665)
T ss_pred eccccc-----cccchheeecc
Confidence 654221 11567777776
No 387
>PRK10115 protease 2; Provisional
Probab=96.78 E-value=2.2 Score=52.05 Aligned_cols=242 Identities=8% Similarity=0.003 Sum_probs=118.5
Q ss_pred cceEEEEEccCCCEEEEEeCC-----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC-----Ce
Q 001190 407 ISVSRVAWSPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KL 476 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d-----~~ 476 (1128)
-.+..+.|||||++||.+... ..|++-|+.+|+.+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 357778999999999976432 3588999988864322 1222 1 146999999986 34443322 35
Q ss_pred EEEEe-cCC--CeEEEecCCCCCeEEEeccCCCCccEEEEEec---cCcEEEEecCC--CCceeeecCCCCeEEEEEEcC
Q 001190 477 IKVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDT--MGSRVDYDAPGHWCTTMLYSA 548 (1128)
Q Consensus 477 i~vWd-~~g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~wd~~~--~~~~~~~~~~~~~i~~~~~s~ 548 (1128)
|..++ .++ +....+........ +......++++++..+. ++.+.+++.+. ......+.........+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 67777 555 22333443333333 22222335566555443 35688888533 222222322223222222 2
Q ss_pred CCCeEEEeeeccCCCceEEEEeCCC-CceeeEeccc-cCCceeEEEEeCCCCEEEEEECCCcEEEE--ECCCCeeeEEEe
Q 001190 549 DGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIKFW--DMDNVNILTSTD 624 (1128)
Q Consensus 549 ~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iw--d~~~~~~~~~~~ 624 (1128)
.+..+......+.....|...++.. ++. ..+..+ .+..+..+.+.. +..+++...+|.-+++ +..++ .+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR-EVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC-ceEEec
Confidence 2334443332222344555556552 322 233333 333566677762 3344445556665554 44333 333333
Q ss_pred cCCCCCCcceEEEc--CCCC-EEEEEEc---CCcEEEEEcccC
Q 001190 625 AEGGLPNLPRLRFS--KEGN-LLAVTTA---DNGFKILANAIG 661 (1128)
Q Consensus 625 ~~~~~~~v~~v~~s--p~~~-~l~~~~~---dg~i~iw~~~~~ 661 (1128)
.... ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 1111 112223344 3433 4433332 466778887765
No 388
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.71 E-value=0.003 Score=43.35 Aligned_cols=38 Identities=34% Similarity=0.581 Sum_probs=33.7
Q ss_pred eeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 001190 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 943 (1128)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd 943 (1128)
+....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778889999999999999999999999999996
No 389
>PRK10115 protease 2; Provisional
Probab=96.67 E-value=2.6 Score=51.43 Aligned_cols=241 Identities=10% Similarity=0.058 Sum_probs=119.5
Q ss_pred cEEEEEEeCCCCcEEEEeeccC----eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
.+..+.+||||++++.+-..+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 4778899999995544433333 788899988764321 0111 11469999999988
Q ss_pred EEEeCC------CeEEEEEccCCC--cceeceeeccccccee-EEEEecCCCeEEEEEecC-CCeEEEEe--c-CCCeEE
Q 001190 422 GVAFTK------HLIQLYSYAGSN--DLRQHSQIDAHVGAVN-DLAFAYPNKLLCVVTCGD-DKLIKVWE--L-SGRKLF 488 (1128)
Q Consensus 422 as~~~d------~~i~vwd~~~~~--~~~~~~~~~~h~~~v~-~l~fs~d~~~~~l~s~s~-d~~i~vWd--~-~g~~~~ 488 (1128)
+....+ ..|..+++.++. ... .+........ .+..+.|++.+++.+.+. ++.+.+++ . ++....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l---v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL---VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE---EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceE
Confidence 776542 357778888772 222 2333333333 333444888643333332 35688888 2 344322
Q ss_pred EecCCCCCeEEEeccCCCCccEEEEEec-cCcEEEE--ecCCCCceeeecCC--CCeEEEEEEcCCCCeEEEeeeccCCC
Q 001190 489 NFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAW--LYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 489 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~w--d~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
.+..-.+....+. +. .+.+++.... ....++. ++........+..+ ...+..+.+. ++.|+.... .++.
T Consensus 264 ~~~~~~~~~~~~~-~~--~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~ 337 (686)
T PRK10115 264 FLPRRKDHEYSLD-HY--QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGL 337 (686)
T ss_pred EEECCCCCEEEEE-eC--CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCE
Confidence 2222222222222 22 1223332222 1233333 44321222223333 3367777776 345554443 2245
Q ss_pred ceEEEEeCCCCceeeEec-cccCCceeEEEEe--CCCC-EEEEEE---CCCcEEEEECCCCe
Q 001190 564 SFLVEWNESEGTIKRTYA-GFRKKSNGVVQFD--TTQN-HFLAVG---EDSQIKFWDMDNVN 618 (1128)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~ 618 (1128)
..+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 338 ~~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 338 TSLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 556667755433 33333 1111 22223344 3334 333333 45778889988765
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.037 Score=60.41 Aligned_cols=146 Identities=13% Similarity=0.124 Sum_probs=98.7
Q ss_pred EEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCC--EE-----EEEcCCCcEEEEECCCCcccceeEEeecC
Q 001190 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN--IL-----VSSGADAQLCVWSIDTWEKRKSVTIHIPA 959 (1128)
Q Consensus 887 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~--~l-----~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~ 959 (1128)
+|.++.....++-.|++.|+.+.++.-|.+ |+-+.+.|+.+ .| +.|-.|..|+=||..-...-.....+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 445566667899999999999999988866 88888988764 22 22445788999998743221111111111
Q ss_pred CCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 960 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 960 ~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
-.......+.+-..+|..++.+.+|.|++||- .+..-++..+. ...+|..+..+.||++|+..+ +.++.+-++.
T Consensus 427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg--LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPG--LGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccc--cCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 12225566777777776666667999999997 45444433332 289999999999999988665 6677776653
No 391
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.63 E-value=1.5 Score=48.28 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=35.4
Q ss_pred CCEEEEEECCCcEEEEECCCCeee-EEEecCCCC-CCcceEEEcCCCCEEEEEEcCCcEE
Q 001190 597 QNHFLAVGEDSQIKFWDMDNVNIL-TSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFK 654 (1128)
Q Consensus 597 ~~~l~~~s~dg~i~iwd~~~~~~~-~~~~~~~~~-~~v~~v~~sp~~~~l~~~~~dg~i~ 654 (1128)
+.++++.-..+.|....++.+..+ ......... .++..+++.|||.+.++...+|.|+
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 344555445677888777644332 222212222 2688999999999988888888764
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.59 E-value=0.55 Score=49.28 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=90.1
Q ss_pred CeeEEEEcCCCCCEEEEEe---CCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEE-CCCCcc
Q 001190 874 ASTFLAFHPQDNNIIAIGT---EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS-IDTWEK 949 (1128)
Q Consensus 874 ~v~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd-~~~~~~ 949 (1128)
.+.+.++++ +++.+|... ....++++..... ....+.+ ..+....|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999 676665544 3344555543322 2222233 3788889999988777777677777774 333332
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe----cCeEEEEecC---Cccc--c-cccccCCCCCCCeEEEEEeeCC
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAIYDAS---KMER--I-RQWTPQDALSAPISCAVYSCNS 1019 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~~i~v~d~~---~~~~--~-~~~~~~~~h~~~v~~l~~s~dg 1019 (1128)
........... ..|..+.+||||..++... ++.|.+--+. .+.. + ............+..+.|.+++
T Consensus 101 -~~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 101 -EPVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred -eeEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 12222221111 2789999999999999854 6777776554 2201 1 1111111125688999999999
Q ss_pred CEEEEEecCC
Q 001190 1020 QLVFATFCDG 1029 (1128)
Q Consensus 1020 ~~l~t~~~dg 1029 (1128)
.+++.+...+
T Consensus 178 ~L~V~~~~~~ 187 (253)
T PF10647_consen 178 TLVVLGRSAG 187 (253)
T ss_pred EEEEEeCCCC
Confidence 9877765444
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.56 E-value=0.62 Score=47.76 Aligned_cols=201 Identities=11% Similarity=0.088 Sum_probs=119.5
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccc-cccCCCCCCCeeEEEecc
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN-DVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~ 841 (1128)
...-..++.|..+|..+-+++.-|.-.+- .+++.+|+.... .+. ...--..+++..
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~--------------------~~d~~tg~~~~~~~l~---~~~FgEGit~~~ 99 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLR--------------------KVDLETGKVLQSVPLP---PRYFGEGITILG 99 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEE--------------------EEETTTSSEEEEEE-T---TT--EEEEEEET
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEE--------------------EEECCCCcEEEEEECC---ccccceeEEEEC
Confidence 34456788998889888888876643332 224444443321 121 222234455544
Q ss_pred CCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-----c
Q 001190 842 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-----K 916 (1128)
Q Consensus 842 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~ 916 (1128)
|.-+.++--++...+||..+.+.+.++.-. +.=..++. |++.|+.......++++|..+-+..+.+.... .
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred CEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence 443444555899999999999999888643 44456663 56666666667789999988776666554332 2
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCC---------CCCCCccEEEEcCCCCEEEEEecCeEE
Q 001190 917 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG---------KTPTGDTRVQFNADQVRMLVVHETQLA 987 (1128)
Q Consensus 917 ~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~v~~v~~s~d~~~l~~~~d~~i~ 987 (1128)
.++-+.+- +|...|=.-....|..-|..+|+......+..... ......+.+|+.|....+.+....--+
T Consensus 176 ~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~ 254 (264)
T PF05096_consen 176 NLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPK 254 (264)
T ss_dssp -EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SE
T ss_pred CcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCc
Confidence 35567775 67777777777788888999998877665432211 112567899999988877776544444
Q ss_pred EEec
Q 001190 988 IYDA 991 (1128)
Q Consensus 988 v~d~ 991 (1128)
+|.+
T Consensus 255 lyeV 258 (264)
T PF05096_consen 255 LYEV 258 (264)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4443
No 394
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=96.54 E-value=2.9 Score=50.41 Aligned_cols=174 Identities=13% Similarity=0.163 Sum_probs=94.6
Q ss_pred eEEEEECCCceEEEEeeCCCC----CeeEEEEcCCCCC-EEEEEe-----------CCCcEEEEeccc-ceeeecccccc
Q 001190 853 KISLFNMMTFKVMTTFMSPPP----ASTFLAFHPQDNN-IIAIGT-----------EDSTIHIYNVRV-DEVKSKLKGHQ 915 (1128)
Q Consensus 853 ~i~vwd~~~~~~~~~~~~~~~----~v~~l~~s~~d~~-~lasg~-----------~dg~v~iwd~~~-~~~~~~l~~h~ 915 (1128)
.|+++|..+++.+..+....+ .+.++.|+..+.. ++++|. .+|.++.|++-. |+.+ .|- |.
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~l-ell-h~ 931 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKL-ELL-HK 931 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCcee-eee-ec
Confidence 378888887777665543222 4667777763444 444443 345577777643 3322 222 32
Q ss_pred cCee--EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecC
Q 001190 916 KRIT--GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDAS 992 (1128)
Q Consensus 916 ~~V~--~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~ 992 (1128)
..+. -.++.|-..++++ +....+++||+...+.+.....+. .+..++.++ ..+.++++|+ ...+.++..+
T Consensus 932 T~~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~----~p~~Is~iq--t~~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 932 TEIPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKF----IPNRISSIQ--TYGARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred cCCCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhcc----CceEEEEEe--ecceEEEEeeccceEEEEEEe
Confidence 2222 2355565555554 345689999998876655544432 112333333 3455777765 3444444333
Q ss_pred C-cccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 993 K-MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 993 ~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
. ++.+..+... .-...|+++.+-..+ -+|.+..-|.+.+-.+.
T Consensus 1005 ~~~n~l~~fadD-~~pR~Vt~~~~lD~~-tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1005 REDNQLIVFADD-PVPRHVTALELLDYD-TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred cCCCeEEEEeCC-CccceeeEEEEecCC-ceeeccccCcEEEEECC
Confidence 2 2233333322 225667777765444 47778777877777654
No 395
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.49 E-value=0.09 Score=45.51 Aligned_cols=102 Identities=16% Similarity=0.152 Sum_probs=65.1
Q ss_pred EEEEEE---eCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 347 VISMDF---HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 347 V~~v~f---spdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
|+++++ .-||..-|++||.|..|+||+=+ +.+.. ..-.+.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 555555 45676788999999999999843 22221 113567888887766 56889
Q ss_pred EeCCCeEEEEEccCCCcceeceeecccccceeEEEEec---CCCeEEEEEecCCCeEE
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~---d~~~~~l~s~s~d~~i~ 478 (1128)
+..+|+|-+|+-... ..+ .+ .+..+.++++.. ||.. -|++|=.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R-lWR----iK-SK~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR-LWR----IK-SKNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce-eee----ec-cCCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999986432 111 22 222356665543 4444 577777777653
No 396
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.48 E-value=0.28 Score=53.48 Aligned_cols=237 Identities=14% Similarity=0.124 Sum_probs=105.6
Q ss_pred CcceEEEee-ccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe---
Q 001190 775 SAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--- 850 (1128)
Q Consensus 775 ~g~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--- 850 (1128)
+.++|+..+ ..+.|.+.|+......|.-..+ .....+.. -.+ . .....+-.-|+|++++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~Kv----------Ie~~ev~~-k~g--~-s~PHT~Hclp~G~imIS~lGd~ 151 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKV----------IEPEEVFE-KTG--L-SRPHTVHCLPDGRIMISALGDA 151 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEE----------E-HHHHHH-HH---E-EEEEEEEE-SS--EEEEEEEET
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEee----------eCHHHHHh-hcC--C-CCCceeeecCCccEEEEeccCC
Confidence 345666666 5788999987755433221111 11100000 000 0 1111223347898888772
Q ss_pred C----CeEEEEECCCceEEEEeeCCCC---CeeEEEEcCCCCCEEEEEe--------------------CCCcEEEEecc
Q 001190 851 G----GKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGT--------------------EDSTIHIYNVR 903 (1128)
Q Consensus 851 d----g~i~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~d~~~lasg~--------------------~dg~v~iwd~~ 903 (1128)
+ |.+.++|-++.+.......... --..+-|.| ..+.+++.. ...++.+||+.
T Consensus 152 ~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~ 230 (461)
T PF05694_consen 152 DGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS 230 (461)
T ss_dssp TS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT
T ss_pred CCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC
Confidence 2 4589999999888877764322 234566777 666776654 23579999999
Q ss_pred cceeeeccccccc--CeeEEEEcCC--CCEEE-EEcCCCcEEEE-ECCCCcccceeEEeecCCC---------------C
Q 001190 904 VDEVKSKLKGHQK--RITGLAFSTS--LNILV-SSGADAQLCVW-SIDTWEKRKSVTIHIPAGK---------------T 962 (1128)
Q Consensus 904 ~~~~~~~l~~h~~--~V~~l~~s~d--~~~l~-s~~~Dg~i~iw-d~~~~~~~~~~~~~~~~~~---------------~ 962 (1128)
+.+.++++.--.. ....|.|..+ ..+=+ .+.-..+|..| .-+.++-.....+.+.... .
T Consensus 231 ~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~ 310 (461)
T PF05694_consen 231 TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAV 310 (461)
T ss_dssp TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE
T ss_pred CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccC
Confidence 9999988864332 3456666554 33322 22334444444 3344432222222222110 0
Q ss_pred CCCccEEEEcCCCCEEEEEe--cCeEEEEecCCccccccc---ccC-------------CCCCCCeEEEEEeeCCCEEEE
Q 001190 963 PTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQW---TPQ-------------DALSAPISCAVYSCNSQLVFA 1024 (1128)
Q Consensus 963 ~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~---~~~-------------~~h~~~v~~l~~s~dg~~l~t 1024 (1128)
+.-++.+..|.|.++|.++. .|.++.||++.-...+.. ... ..-.+...-+..|-||+.|++
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 24578999999999999975 999999999864332211 100 001234578889999998887
Q ss_pred Ee
Q 001190 1025 TF 1026 (1128)
Q Consensus 1025 ~~ 1026 (1128)
.+
T Consensus 391 Tn 392 (461)
T PF05694_consen 391 TN 392 (461)
T ss_dssp E-
T ss_pred Ee
Confidence 65
No 397
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.41 E-value=0.7 Score=45.33 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=62.9
Q ss_pred EEEEEecCcceEEEeec-cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeE
Q 001190 768 VRLLYTNSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1128)
Q Consensus 768 ~~l~~s~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1128)
++++|+.+.+.+....+ +-.|.-||.+... |... ..-.+++++..+..... ....+++..+|.+.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~t----G~~s--nr~~i~dlrk~~~~e~~--------~PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPT----GDLS--NRKVIFDLRKSQPFESL--------EPDGMTIDTEGNLY 226 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCc----cccc--CcceeEEeccCCCcCCC--------CCCcceEccCCcEE
Confidence 45677766666655443 5566667743211 1111 11124455443322211 12245556688877
Q ss_pred EEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcC
Q 001190 847 MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 882 (1128)
Q Consensus 847 a~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~ 882 (1128)
++.- .++|...|..+|+.+.+++-....|+|++|--
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 6665 78899999999999999999999999999954
No 398
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.40 E-value=0.0098 Score=40.63 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=33.8
Q ss_pred ceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001190 862 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1128)
Q Consensus 862 ~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd 901 (1128)
+++...+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 345667778889999999999 778999999999999996
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.051 Score=64.76 Aligned_cols=249 Identities=11% Similarity=0.038 Sum_probs=139.5
Q ss_pred CCCCeeEEEeccCCCeEEEEe--CC-eEEEEECCCceEEE-----EeeC------CCCCeeEEEEcCCCCCEEEEEeCCC
Q 001190 830 LEEAVPCIALSKNDSYVMSAT--GG-KISLFNMMTFKVMT-----TFMS------PPPASTFLAFHPQDNNIIAIGTEDS 895 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~--dg-~i~vwd~~~~~~~~-----~~~~------~~~~v~~l~~s~~d~~~lasg~~dg 895 (1128)
..-++..++..+|++..++.. +| .|..||+.+...-. -+.. ...-..++.|.|.-....|....|+
T Consensus 99 k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl 178 (1405)
T KOG3630|consen 99 KEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL 178 (1405)
T ss_pred ccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcccc
Confidence 345677778888987766553 44 48999997543321 1111 2233567788873334456777899
Q ss_pred cEEEEecccce-eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC
Q 001190 896 TIHIYNVRVDE-VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1128)
Q Consensus 896 ~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 974 (1128)
.|++..+.-.. ....+. -...+++++|+|.|+.++.|-..|++.-|...-... ..++.........|.+|+|-..
T Consensus 179 sl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik---~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK---SEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred chhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccccee---ecccCCCcCCCcceeEEEEecc
Confidence 99988765332 222222 446789999999999999999999999887654321 1122222222256777777777
Q ss_pred CCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCc
Q 001190 975 QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS 1054 (1128)
Q Consensus 975 ~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1054 (1128)
..++++-.. -++ . . ..+...+++.+ .-.-+|.+..-..-.+..-. ....
T Consensus 255 ~eflvvy~n--------~ts-----~-~----~dpd~y~~~~~------k~kp~g~~nF~E~~d~tppf-------g~~~ 303 (1405)
T KOG3630|consen 255 QEFLVVYGN--------VTS-----E-T----DDPDSYDQKMY------KIKPDGSANFQETFDITPPF-------GQIV 303 (1405)
T ss_pred eeEEEEecc--------ccc-----C-c----CCchhhhhccc------cccCcceeeeccccCCCCCc-------cccC
Confidence 666665221 111 0 0 01111111111 01123333332222221100 0000
Q ss_pred ccCCCCccceEEEEEecCCCCEEEEEE-CCCcEEEEcCCCCCCCcccCCCCCCCccCCCCCCCCCC
Q 001190 1055 VLNGSQTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTS 1119 (1128)
Q Consensus 1055 ~~~~~~~~~~~~~~~~p~~~~~l~s~~-~dg~i~iWd~~~~~~~w~~~~p~~~~~~~~~~~~~~~~ 1119 (1128)
-+.|...++-..|.+.+.++++.|+ ....|-+|... ..|.+..+.|. .+...|.+.++.
T Consensus 304 --rq~h~y~~~L~~W~~~~~~vVvvansaSsEvsila~~---~qW~~w~~vde-~ra~LP~s~k~d 363 (1405)
T KOG3630|consen 304 --RQPHMYKVTLSGWIEPDANVVVVANSASSEVSILASM---KQWIEWSQVDE-KRAVLPISEKTD 363 (1405)
T ss_pred --ccchhHHHhhhhhcccccceEEEecccccchhhhhhh---cceeecccccc-ceeeecccccCC
Confidence 0123333455778887777665554 44568999883 45999999887 777778777776
No 400
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.24 E-value=0.31 Score=57.68 Aligned_cols=234 Identities=13% Similarity=0.137 Sum_probs=128.3
Q ss_pred cCCCeEEEEe-C------CeEEEEECCCceEEEEeeC-CCCCeeEEEEcCCCCCEEEEEeCC-C-----cEEEEecccce
Q 001190 841 KNDSYVMSAT-G------GKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTED-S-----TIHIYNVRVDE 906 (1128)
Q Consensus 841 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~lasg~~d-g-----~v~iwd~~~~~ 906 (1128)
..+.+++.|+ . ..+..||..+++-.....- ....-.++++. ++.+.++|+.| | ++..||..+++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3455666665 3 3488899887743322211 22223445554 56888999988 3 57788887654
Q ss_pred e--eecccccccCeeEEEEcCCCCEEEEEcCCCc-----EEEEECCCCcccceeEEeecCCCCCCCccEEE-EcCCCCEE
Q 001190 907 V--KSKLKGHQKRITGLAFSTSLNILVSSGADAQ-----LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ-FNADQVRM 978 (1128)
Q Consensus 907 ~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~-~s~d~~~l 978 (1128)
= +..+........... -+|.+.|.||.||. +-.||..+.+-...-+.. ......+ ..-+|+..
T Consensus 361 W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-------~~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-------TRRSGHGVAVLGGKLY 431 (571)
T ss_pred eeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCC-------cceeeeEEEEECCEEE
Confidence 2 222222222222222 26788899999864 667777664421111111 1122222 23356666
Q ss_pred EEEe-c------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCc-----EEEEecCCCceEEEeC
Q 001190 979 LVVH-E------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN-----IGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 979 ~~~~-d------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~-----i~vwd~~~~~~~~~~~ 1046 (1128)
++|+ + .++..||..+..-...-.... ...-.. .-.-++++.+.|+.|+. |..||..+.+-...-.
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~--~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT--RRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCccc--ccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 6543 2 458899988775433222211 111112 23347777888887763 7889988776544311
Q ss_pred CCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCc-----EEEEcCCCCCCCcccCCC
Q 001190 1047 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGS-----VKVMEPSESEGKWGVSPP 1103 (1128)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~-----i~iWd~~~~~~~w~~~~p 1103 (1128)
+... .++ ..++ ..++.+.+.|+.||. |..||..+.+ |....+
T Consensus 509 ----m~~~---rs~----~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 509 ----MTSP---RSA----VGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred ----Cccc---ccc----ccEE--EECCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 1111 111 1111 125788999999984 7788888866 888766
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.22 E-value=3 Score=47.17 Aligned_cols=126 Identities=21% Similarity=0.374 Sum_probs=78.5
Q ss_pred ecCCCcEEEEEEeCC----CCcEEEEeeccCeEEEEEcc-----CCceecccccccccccccCccccceeccCCCcceEE
Q 001190 341 LHQGSTVISMDFHPS----HQTLLLVGSSNGEITLWELA-----MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 341 ~~h~~~V~~v~fspd----g~~lla~gs~d~~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
++.-+.|..+.|.|- -..|||+ .....|.||.+. +++.+..+..++-+ ++ .---..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e------~~--------pvLpQG 117 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIRE------PF--------PVLPQG 117 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccC------Cc--------ccCCCc
Confidence 444456999999986 3347776 477899999985 23333332222110 00 011224
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCC
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g 484 (1128)
+.|+|....|++-.....=.++++..... +....+ ...+.|.|.+|.+||+++.++.|+ .=.-++||...
T Consensus 118 CVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~q 187 (671)
T PF15390_consen 118 CVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQ 187 (671)
T ss_pred ccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCch
Confidence 78999999988876655545667654322 121123 456779999999999986555555 55778999333
No 402
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.22 E-value=0.69 Score=48.54 Aligned_cols=146 Identities=13% Similarity=0.096 Sum_probs=90.7
Q ss_pred CCeeEEEeccCCCeEEEEe--CCe--EEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe-cccce
Q 001190 832 EAVPCIALSKNDSYVMSAT--GGK--ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN-VRVDE 906 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~--dg~--i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd-~~~~~ 906 (1128)
..+.+.++|+||+.+|... ++. +.++.. +....... ....++...|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 544 555544 33333321 233788899999 688777777677777774 33332
Q ss_pred ee-ecc--cccccCeeEEEEcCCCCEEEEEc---CCCcEEEEECCCCccc----ceeEEeecCCCCCCCccEEEEcCCCC
Q 001190 907 VK-SKL--KGHQKRITGLAFSTSLNILVSSG---ADAQLCVWSIDTWEKR----KSVTIHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 907 ~~-~~l--~~h~~~V~~l~~s~d~~~l~s~~---~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
.. ..+ ..-.+.|..+.+||||..+|... .++.|.+=-+.....- .......... ....+..+.|.+++.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~-~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP-LLSDVTDVAWSDDST 178 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc-ccCcceeeeecCCCE
Confidence 21 111 11112899999999999887655 3577777665432211 1111121111 126788999999999
Q ss_pred EEEEEe
Q 001190 977 RMLVVH 982 (1128)
Q Consensus 977 ~l~~~~ 982 (1128)
+++.+.
T Consensus 179 L~V~~~ 184 (253)
T PF10647_consen 179 LVVLGR 184 (253)
T ss_pred EEEEeC
Confidence 888864
No 403
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.21 E-value=0.23 Score=43.05 Aligned_cols=103 Identities=7% Similarity=0.059 Sum_probs=61.6
Q ss_pred eEEEeccC-CCC-ccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 497 VYSICPHH-KEN-IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 497 v~~~~~~~-~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
|+++++.. +.+ ...|++|+.|..||+|+- .....++. ....|.+++-...++ ++.+. .+|+|-+|+- .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~~-F~Y~l----~NGTVGvY~~--~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGGR-FAYAL----ANGTVGVYDR--S 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCCE-EEEEe----cCCEEEEEeC--c
Confidence 55666543 222 268999999999999953 23333433 455688888777755 44444 3888999875 3
Q ss_pred ceeeEeccccCCceeEEEEeCCC---CEEEEEECCCcEE
Q 001190 575 TIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIK 610 (1128)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~ 610 (1128)
+.+...+..+. .+....+..++ ..|++|-.+|.|-
T Consensus 72 ~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33333333332 33333333332 3688888888774
No 404
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.19 E-value=0.13 Score=61.49 Aligned_cols=141 Identities=11% Similarity=0.098 Sum_probs=96.7
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCC-eEEEeccCC---CCccEEEEEeccCcEEEEecCCCCceeee-c----C
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP-VYSICPHHK---ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-D----A 536 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~----~ 536 (1128)
+|........|+-.| ..|+.+..+..|... |..++-... -+....+.|-.++.+..||.+..+..... . .
T Consensus 496 il~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred EeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 455555668899999 999999999888754 777653211 01234567778889999999876532221 1 1
Q ss_pred CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 537 ~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
.....+|++-+.+|. ||+|+ .+|.|++||--..+....+++... +|..+..+.||+++++.+.. .|.+++.
T Consensus 576 ~~~~Fs~~aTt~~G~-iavgs----~~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDGY-IAVGS----NKGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCce-EEEEe----CCCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 233678888888885 55555 488999999654444455666554 89999999999998887754 5556554
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.14 E-value=2.8 Score=46.12 Aligned_cols=242 Identities=15% Similarity=0.133 Sum_probs=119.6
Q ss_pred eeEEEeccCCCeEEEEeCCeEEEEECCCceE---EEEee----CCCCCeeEEEEcCC---CCCEEEEEeCC--------C
Q 001190 834 VPCIALSKNDSYVMSATGGKISLFNMMTFKV---MTTFM----SPPPASTFLAFHPQ---DNNIIAIGTED--------S 895 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~---~~~~~----~~~~~v~~l~~s~~---d~~~lasg~~d--------g 895 (1128)
.+.|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5789999999988876699999999 44443 22221 23446789999982 24444444422 2
Q ss_pred cEEEEecccc-------eee-ecccc---cccCeeEEEEcCCCCEEEEEcCCCc-----------EEEEECCC-Ccccce
Q 001190 896 TIHIYNVRVD-------EVK-SKLKG---HQKRITGLAFSTSLNILVSSGADAQ-----------LCVWSIDT-WEKRKS 952 (1128)
Q Consensus 896 ~v~iwd~~~~-------~~~-~~l~~---h~~~V~~l~~s~d~~~l~s~~~Dg~-----------i~iwd~~~-~~~~~~ 952 (1128)
.|.-|.+..+ +.+ ..+.. .......|.|.|||.+.++.+..+. =+|+.+.. ++....
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~d 162 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPAD 162 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TT
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCC
Confidence 3444444333 111 11111 1223456999999988777765432 01222111 110000
Q ss_pred eEE--------ee-cCCCCCCCccEEEEcCC-CCEEEE--EecCeEEEEecCCcccc----cc------------cccC-
Q 001190 953 VTI--------HI-PAGKTPTGDTRVQFNAD-QVRMLV--VHETQLAIYDASKMERI----RQ------------WTPQ- 1003 (1128)
Q Consensus 953 ~~~--------~~-~~~~~~~~v~~v~~s~d-~~~l~~--~~d~~i~v~d~~~~~~~----~~------------~~~~- 1003 (1128)
.+. .+ ..+. .....++|+|. |.+.++ +.+..=.|..+..+... .. ....
T Consensus 163 nP~~~~~~~~~~i~A~Gl--RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 163 NPFVGDDGADSEIYAYGL--RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp STTTTSTTSTTTEEEE----SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CccccCCCceEEEEEeCC--CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 000 00 0000 34567999999 666665 22333333333333210 00 0000
Q ss_pred --------CCCCCCeEEEEEee-------CCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEE
Q 001190 1004 --------DALSAPISCAVYSC-------NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVA 1068 (1128)
Q Consensus 1004 --------~~h~~~v~~l~~s~-------dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1128)
..+...+..+.|-. +|.++++.-..+.|....++++..+..... +-......+..++
T Consensus 241 ~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~r~~~v~ 312 (331)
T PF07995_consen 241 GFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--------FLGGFGGRPRDVA 312 (331)
T ss_dssp TS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--------ECTTSSS-EEEEE
T ss_pred CcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--------ccccCCCCceEEE
Confidence 01235566677754 344666655567787777775543322220 0012333678999
Q ss_pred EecCCCCEEEEEECCCcEE
Q 001190 1069 AHPLEPNQFAIGLTDGSVK 1087 (1128)
Q Consensus 1069 ~~p~~~~~l~s~~~dg~i~ 1087 (1128)
+.| |+.++++.+.+|.|.
T Consensus 313 ~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EET-TSEEEEEE-TTTTEE
T ss_pred EcC-CCeEEEEECCCCeEe
Confidence 999 699999988888874
No 406
>PRK13684 Ycf48-like protein; Provisional
Probab=96.14 E-value=2.8 Score=46.13 Aligned_cols=157 Identities=10% Similarity=0.060 Sum_probs=90.3
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEE-Eecccceee-ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc
Q 001190 872 PPASTFLAFHPQDNNIIAIGTEDSTIHI-YNVRVDEVK-SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949 (1128)
Q Consensus 872 ~~~v~~l~~s~~d~~~lasg~~dg~v~i-wd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~ 949 (1128)
...+..+.+.+ ++.+++++. .|.+.. ++ ..++.- ..-..-...++++.+.++++.++.+ ..|.+++=..+.|..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688899998 777766554 555443 22 112211 1112234578999999998876654 567665333444432
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCC
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1029 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg 1029 (1128)
-... ..........+..+.+.+++..++++.+|.+. .....++.-........-......+.|..+++.+++| ..|
T Consensus 248 W~~~--~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G 323 (334)
T PRK13684 248 WSKP--IIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRG 323 (334)
T ss_pred cccc--cCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCc
Confidence 1111 11111111346778999999888887777655 4445555444332211113467888888777766655 588
Q ss_pred cEEEEec
Q 001190 1030 NIGVFDA 1036 (1128)
Q Consensus 1030 ~i~vwd~ 1036 (1128)
.|..|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 8887764
No 407
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.11 E-value=3.2 Score=46.48 Aligned_cols=277 Identities=10% Similarity=0.134 Sum_probs=145.6
Q ss_pred eCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-----CCCEEEEEeCC
Q 001190 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-----DGNYVGVAFTK 427 (1128)
Q Consensus 353 spdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~las~~~d 427 (1128)
+++++..+++||..|.++||+...+..... ...+...-..+|..++.-+ +...||+ -.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~---------------~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE---------------DLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc---------------cEEEEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 355566789999999999999855442110 0011222356787777643 3345555 455
Q ss_pred CeEEEEEccCCC-------cceeceeeccccc--ceeEEEEec----CCCeEEEEEecCCCeEEEEecCCCeE-EEecC-
Q 001190 428 HLIQLYSYAGSN-------DLRQHSQIDAHVG--AVNDLAFAY----PNKLLCVVTCGDDKLIKVWELSGRKL-FNFEG- 492 (1128)
Q Consensus 428 ~~i~vwd~~~~~-------~~~~~~~~~~h~~--~v~~l~fs~----d~~~~~l~s~s~d~~i~vWd~~g~~~-~~~~~- 492 (1128)
..+.||.+.... ... +..+..|.- ....++.-| .|+. ++..=+-||.+.+++.+.-.. +.+.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ 174 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDF 174 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCC
Confidence 678888884221 111 112223322 222233322 2233 788889999999999554443 33332
Q ss_pred -CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC-----------------------ceeeecCCCC--eEEEEEE
Q 001190 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------SRVDYDAPGH--WCTTMLY 546 (1128)
Q Consensus 493 -h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-----------------------~~~~~~~~~~--~i~~~~~ 546 (1128)
..+++ ++.+.. +.+++++.+..+..|....-. ..+.+..... .|..+.+
T Consensus 175 llPgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~ 249 (418)
T PF14727_consen 175 LLPGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRF 249 (418)
T ss_pred CCCcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEc
Confidence 33444 333333 468888888888888652110 0111221111 2334444
Q ss_pred cCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC----CC---CEEEEEECCCcEEEEECCCCee
Q 001190 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT----TQ---NHFLAVGEDSQIKFWDMDNVNI 619 (1128)
Q Consensus 547 s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~s~dg~i~iwd~~~~~~ 619 (1128)
+.....+++-+ +..+.+.+. +|.+....+-.-. +...+.|.. ++ ..++.++.++.+.||.-. ++
T Consensus 250 ~~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L 320 (418)
T PF14727_consen 250 SSSESDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TL 320 (418)
T ss_pred CCCCceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eE
Confidence 43334444443 667777775 4554433333211 232232322 22 248889999999999743 34
Q ss_pred eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+.........-.+....|..-...|++-+.+|.+.+-=+-|.
T Consensus 321 ~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 321 VWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 433333221101122223333457888888999998777665
No 408
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.49 Score=45.53 Aligned_cols=191 Identities=15% Similarity=0.104 Sum_probs=106.2
Q ss_pred CCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCe
Q 001190 842 NDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 918 (1128)
Q Consensus 842 dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V 918 (1128)
||.++.+.+ ...|++||+.+++.+.+-.-....+..=-...-+..+.+..-.+|.-.++|.++.+++..+.- .+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 555665554 356999999999887765433222221111111334455566788899999999888776652 3444
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCccccc
Q 001190 919 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 998 (1128)
Q Consensus 919 ~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~ 998 (1128)
++++- |++-|..++...++..-|.++........+. -| |.++.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT----------------~~-------------------g~pv~ 176 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT----------------DD-------------------GVPVS 176 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEE----------------EC-------------------Ceecc
Confidence 55543 5555666655566776666654332222111 11 11211
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
.+ +.+.|- ||...|-.=.+..|..-|.++|+++..+....-....-....+..-...+++.|+.+++++
T Consensus 177 ~L----------NELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i 245 (262)
T COG3823 177 KL----------NELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI 245 (262)
T ss_pred cc----------cceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence 11 122221 4555554445566777788888888877744333322222233344578999997667777
Q ss_pred EEE
Q 001190 1079 IGL 1081 (1128)
Q Consensus 1079 s~~ 1081 (1128)
+|-
T Consensus 246 TGK 248 (262)
T COG3823 246 TGK 248 (262)
T ss_pred ecC
Confidence 763
No 409
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.023 Score=67.32 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=70.8
Q ss_pred EEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCC
Q 001190 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~ 438 (1128)
+++.|+..|.|-..|+.+.=... ..-..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~------------------~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL------------------HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh------------------hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 57888899999998886531100 001224679999999999999999999999999999999
Q ss_pred CcceeceeecccccceeE---EEEecCCCeEEEEEecCCCeEEEEe
Q 001190 439 NDLRQHSQIDAHVGAVND---LAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 439 ~~~~~~~~~~~h~~~v~~---l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+.++. +..|..+.++ +.+..++. .++++...|. +|.
T Consensus 163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWK 201 (1206)
T ss_pred cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEE
Confidence 88775 4445444444 44455555 6777776665 676
No 410
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.92 E-value=3.9 Score=45.83 Aligned_cols=279 Identities=13% Similarity=0.145 Sum_probs=145.6
Q ss_pred cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc-----CCCeEEEEe
Q 001190 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-----NDSYVMSAT 850 (1128)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----dg~~la~~~ 850 (1128)
...+++|+..|.+++|+-......+.. .++.. ....+|..+..-. +...||+-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~----------------lllE~-----~l~~PILqv~~G~F~s~~~~~~LaVLh 95 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPED----------------LLLET-----QLKDPILQVECGKFVSGSEDLQLAVLH 95 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCcc----------------EEEEE-----ecCCcEEEEEeccccCCCCcceEEEec
Confidence 357888999999999974322221110 01111 1345555554422 334566656
Q ss_pred CCeEEEEECCC--ce-------EEEEeeCCCC--CeeEEEEcCC----CCCEEEEEeCCCcEEEEecccceeeecccccc
Q 001190 851 GGKISLFNMMT--FK-------VMTTFMSPPP--ASTFLAFHPQ----DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ 915 (1128)
Q Consensus 851 dg~i~vwd~~~--~~-------~~~~~~~~~~--~v~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 915 (1128)
-.++.||.+.. |. .+..+..|.- ....+++-|. +..++++-+.||.+.+|+-+.-.....+.+ .
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 77777887621 11 1222222322 2223333331 246888999999999999776544444433 1
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc------------------cceeEEe-ecCCCCCCCccEEEEcCCCC
Q 001190 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK------------------RKSVTIH-IPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~------------------~~~~~~~-~~~~~~~~~v~~v~~s~d~~ 976 (1128)
---..+.+.+....+++++.+..+.-|....-.. ....+.. ..-+...-.+..+.++....
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~ 254 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSES 254 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCc
Confidence 1123467888888899998888888887632000 0000000 00010001222333344444
Q ss_pred EEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEee----CCC---EEEEEecCCcEEEEecCCCceEEEeCCCC
Q 001190 977 RMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC----NSQ---LVFATFCDGNIGVFDADTLRLRCYIAPST 1049 (1128)
Q Consensus 977 ~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~----dg~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 1049 (1128)
.+++-.+..+.+.+. +|......+. + ..+.....|.. ++. .+++++.++.+.||.=.+..--+.+.
T Consensus 255 ~IvvLger~Lf~l~~-~G~l~~~krL-d--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~--- 327 (418)
T PF14727_consen 255 DIVVLGERSLFCLKD-NGSLRFQKRL-D--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP--- 327 (418)
T ss_pred eEEEEecceEEEEcC-CCeEEEEEec-C--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC---
Confidence 555556666776665 3433322222 1 12222222322 322 47788899999999755433333332
Q ss_pred CCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1050 YLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
..++.+....|.. -.++|++-+.+|.+.+-=+-+
T Consensus 328 ---------~~PVal~v~~~~~-~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 328 ---------HVPVALSVANFNG-LKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred ---------CCCEEEEecccCC-CCceEEEEcCCCcEEEEEeCC
Confidence 2333333333333 478999999999998764444
No 411
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.82 E-value=2 Score=52.47 Aligned_cols=240 Identities=11% Similarity=0.033 Sum_probs=122.3
Q ss_pred CCCeEEEEeCCeEEEEECCCceEEEEeeCCCCC--------eeEEEEcC---------------CCCCEEEEEeCCCcEE
Q 001190 842 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA--------STFLAFHP---------------QDNNIIAIGTEDSTIH 898 (1128)
Q Consensus 842 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~l~~s~---------------~d~~~lasg~~dg~v~ 898 (1128)
++.++++..++.|.-.|..+|+.+-++...... ...+++.. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444444788999999999988776532211 12233321 0234677888999999
Q ss_pred EEecccceeeecccccccCee-------------EEEEcC--CCCEEEEEcC----------CCcEEEEECCCCccccee
Q 001190 899 IYNVRVDEVKSKLKGHQKRIT-------------GLAFST--SLNILVSSGA----------DAQLCVWSIDTWEKRKSV 953 (1128)
Q Consensus 899 iwd~~~~~~~~~l~~h~~~V~-------------~l~~s~--d~~~l~s~~~----------Dg~i~iwd~~~~~~~~~~ 953 (1128)
-.|.++|+....+.. .+.|. .+.-+| .+..++.++. +|.|+-+|+.+|+.+-..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998866532 12110 011111 1234555532 688999999999987665
Q ss_pred EEeecCCCCCCCccEEEEcCCCCEEEEEecC--eEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcE
Q 001190 954 TIHIPAGKTPTGDTRVQFNADQVRMLVVHET--QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1031 (1128)
Q Consensus 954 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~--~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i 1031 (1128)
........ .. -+++.....+..+ ...-||.+.+....-.-. . +..+....+........++|
T Consensus 353 ~~g~p~~~--~~------~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn----~----~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 353 DPGNPDPT--AP------PAPGETYTRNTPNSWSVASYDEKLGLVYLPMGN----Q----TPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred ecCCCCcc--cC------CCCCCEeccCCCCccCceEEcCCCCeEEEeCCC----c----cccccCCccccCcccccceE
Confidence 43211110 00 0122221111111 122333332222110000 0 00010011101111235668
Q ss_pred EEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC---EEEEEECCCcEEEEcCCCCCCCcccC
Q 001190 1032 GVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN---QFAIGLTDGSVKVMEPSESEGKWGVS 1101 (1128)
Q Consensus 1032 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~l~s~~~dg~i~iWd~~~~~~~w~~~ 1101 (1128)
.-.|++||+.+..++... .-.....-...+.-+.+...+++ .++.++.+|.+.+.|..+|+..|...
T Consensus 417 vALD~~TGk~~W~~Q~~~---hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 417 VALDATTGKERWVFQTVH---HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEEeCCCCceEEEecccC---CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 888999999988777311 00011111111111222221342 79999999999999999999999853
No 412
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.1 Score=62.08 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=76.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~ 495 (1128)
.+..++.|+..|.+-..|+.+. ++....=..-.++|++++|+.||. .++.|-.+|.|.+|| ..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667899999999988888764 221111223467999999999999 889999999999999 88899999988888
Q ss_pred CeEEEeccC-CCCccEEEEEeccCcEEEEec
Q 001190 496 PVYSICPHH-KENIQFIFSTAIDGKIKAWLY 525 (1128)
Q Consensus 496 ~v~~~~~~~-~~~~~~l~s~~~dg~i~~wd~ 525 (1128)
+.+++-++. ..++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877765432 234456777777776 5654
No 413
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.79 E-value=0.77 Score=54.35 Aligned_cols=232 Identities=11% Similarity=0.030 Sum_probs=117.3
Q ss_pred CCCEEEEEeCC------CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC------CeEEEEe-cC
Q 001190 417 DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-LS 483 (1128)
Q Consensus 417 dg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d------~~i~vWd-~~ 483 (1128)
.+..++.||.+ ..+..||..+++-.. ...+. +...-.++++. ++. +.++||.| .++..|| ..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~-~~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVL-NGK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEE-CCE--EEEEccccCCCcccceEEEecCCC
Confidence 34556666655 357888888764322 11222 22234445554 345 67888888 3677888 55
Q ss_pred CCeEE--EecCCCCCeEEEeccCCCCccEEEEEeccCc-----EEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 484 GRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGK-----IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 484 g~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
++-.. .+...........+ +|.+.++|+.||. |-.||..+.+=...-......-..-...-+|...++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 54322 11111111111121 5678888998864 5667655433222221122112222233466666777
Q ss_pred eeccCCC--ceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC-----cEEEEECCCCeeeEEEecCCCC
Q 001190 557 GTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 557 ~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
|.+...+ ..+..||..+.+-...-+-.....-..++ .-++...+.||.|+ .|..||..+.+....-......
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 6543322 57888888876543322221111111122 22456666677665 3778888887765543222222
Q ss_pred CCcceEEEcCCCCEEEEEEcCCc-----EEEEEccc
Q 001190 630 PNLPRLRFSKEGNLLAVTTADNG-----FKILANAI 660 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l~~~~~dg~-----i~iw~~~~ 660 (1128)
..+..+.+ ++...++|+.||. |..||..+
T Consensus 514 s~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 514 SAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 12222222 6677788877654 44555444
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.74 E-value=2.1 Score=47.02 Aligned_cols=206 Identities=15% Similarity=0.124 Sum_probs=88.1
Q ss_pred CCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceecc-CCCcceEEEEEccCCCEEEEEe--C----C
Q 001190 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGVAF--T----K 427 (1128)
Q Consensus 355 dg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las~~--~----d 427 (1128)
+.++|++-|-.++.|.|.|+.+.-..- +-.|+.+.. .+.. .--..-..+-.-|+|+.++++- . -
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P-~l~KvIe~~--------ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP-RLHKVIEPE--------EVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS--EEEEEE-HH--------HHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC-ceEeeeCHH--------HHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence 345455555578899999987532110 001111100 0000 0001122233346888888762 2 2
Q ss_pred CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC--------------------CCeEEEEe-cCCCe
Q 001190 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--------------------DKLIKVWE-LSGRK 486 (1128)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~--------------------d~~i~vWd-~~g~~ 486 (1128)
|.+.+.|-++.+.......-.+...--+++-|.|..+ .++|... ..++.+|| .+.+.
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 4577888776554432211112223345566666655 5666542 36899999 88888
Q ss_pred EEEecCCC--CCeEEEeccCCCCccEEEEEe-ccCcEEEEec-CCCC----ceeeecCC-----------------CCeE
Q 001190 487 LFNFEGHE--APVYSICPHHKENIQFIFSTA-IDGKIKAWLY-DTMG----SRVDYDAP-----------------GHWC 541 (1128)
Q Consensus 487 ~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~-~~~~----~~~~~~~~-----------------~~~i 541 (1128)
++++.--. .....+.|..+++..+-++++ ....|..|-- +.+. ....+... ..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 88876432 234567776666555544443 3344444422 2111 11111110 2347
Q ss_pred EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
+.+.+|.|.++|..+.. ..|.|+.||+...
T Consensus 315 tDI~iSlDDrfLYvs~W---~~GdvrqYDISDP 344 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNW---LHGDVRQYDISDP 344 (461)
T ss_dssp --EEE-TTS-EEEEEET---TTTEEEEEE-SST
T ss_pred EeEEEccCCCEEEEEcc---cCCcEEEEecCCC
Confidence 89999999999998886 6899999999864
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.71 E-value=0.029 Score=40.32 Aligned_cols=35 Identities=29% Similarity=0.556 Sum_probs=30.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCce
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~ 379 (1128)
....|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus 10 l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 345799999999998 8999999999999998 4543
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.63 E-value=0.89 Score=46.66 Aligned_cols=171 Identities=8% Similarity=0.092 Sum_probs=115.0
Q ss_pred ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEE
Q 001190 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIY 989 (1128)
Q Consensus 911 l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~ 989 (1128)
+.+-...|.++.|+|+.+.|++......-.||=-..|+.+..+++... .-.-.+.+..+|++.++-. ++.+.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-----~DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-----SDPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-----CChhHeEEecCCEEEEEehhcceEEEE
Confidence 445556699999999999999998888888887788888887776642 3345688888888888764 7888888
Q ss_pred ecCCccccccccc-----C-CCC-CCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCc-
Q 001190 990 DASKMERIRQWTP-----Q-DAL-SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQT- 1061 (1128)
Q Consensus 990 d~~~~~~~~~~~~-----~-~~h-~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~- 1061 (1128)
.+..+..+..... . ..+ +...-.++|+|.++.|+.+-+-.-+.||....+..-...... ..+...
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~-------~~~~~~~ 228 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHAS-------LDPTADR 228 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccc-------cCccccc
Confidence 8776533222111 1 111 567789999999999999888888888877633211111100 001111
Q ss_pred ----cceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1062 ----VYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1062 ----~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
.-+.++.|++..+.+++-+..++.+.--|...
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 12456788887778888887777777666543
No 417
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.62 E-value=0.042 Score=39.51 Aligned_cols=34 Identities=18% Similarity=0.420 Sum_probs=29.9
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~ 439 (1128)
....|.+++|+|...+||.|+.+|.|.++.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3457999999999999999999999999998 444
No 418
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.42 E-value=2.8 Score=45.92 Aligned_cols=188 Identities=14% Similarity=0.173 Sum_probs=107.7
Q ss_pred EEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccC--CCCccE--EEEEec-c---CcEEEEecCCCCceee-ecC-
Q 001190 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH--KENIQF--IFSTAI-D---GKIKAWLYDTMGSRVD-YDA- 536 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~--~~~~~~--l~s~~~-d---g~i~~wd~~~~~~~~~-~~~- 536 (1128)
+++....++-+.+||..|+.++.+. .++++.+.+.. .-+|+. |+.++. + .+|++|.++....... +..
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 6777788889999999999998885 34455443211 112222 344443 2 4699998875433332 211
Q ss_pred ------CCCeEEEEEE--cC-CCCeEEEeeeccCCCceEEEEeCC---CC----ceeeEeccccCCceeEEEEeCCCCEE
Q 001190 537 ------PGHWCTTMLY--SA-DGSRLFSCGTSKDGDSFLVEWNES---EG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1128)
Q Consensus 537 ------~~~~i~~~~~--s~-~g~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1128)
....++.+|+ ++ +|.+.+.... .++.+..|.+. .+ +++++|.... .+..|.......+|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 1124667776 33 4665555543 46767766553 33 4677777654 57778888888899
Q ss_pred EEEECCCcEEEEECCC-----CeeeEEEecCCCCCCcceEEEc--CCCC-EEEEEE-cCCcEEEEEcccC
Q 001190 601 LAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFS--KEGN-LLAVTT-ADNGFKILANAIG 661 (1128)
Q Consensus 601 ~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s--p~~~-~l~~~~-~dg~i~iw~~~~~ 661 (1128)
+.+-++--|.-|+.+. ++.+.......-...|..+++- .++. +|++.+ .+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999888888762 2223233332334467777764 3332 444444 4778999997653
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.25 E-value=3.7 Score=50.15 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=94.6
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeE-------------EEeccCCCCccEEEEEec----------cCcEEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY-------------SICPHHKENIQFIFSTAI----------DGKIKA 522 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~~ 522 (1128)
.++.++.|+.+.-.| .+|+.+..+.. .+.|. .+.-.|.-.+..+++|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 577788899999999 99998876632 22111 000001001235666643 688999
Q ss_pred EecCCCCceeeecCCC---------C--------eE-EEEEEcCCCCeEEEeeec--------------cCCCceEEEEe
Q 001190 523 WLYDTMGSRVDYDAPG---------H--------WC-TTMLYSADGSRLFSCGTS--------------KDGDSFLVEWN 570 (1128)
Q Consensus 523 wd~~~~~~~~~~~~~~---------~--------~i-~~~~~s~~g~~l~~~~~~--------------~~~~~~i~~wd 570 (1128)
+|.++++....+.... + .+ ..++++++...++....+ ..-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 9999999888765310 0 11 234555555555443210 01235677788
Q ss_pred CCCCceeeEecc-ccC-------CceeEEEEeC-CCC---EEEEEECCCcEEEEECCCCeeeEEEe
Q 001190 571 ESEGTIKRTYAG-FRK-------KSNGVVQFDT-TQN---HFLAVGEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 571 ~~~~~~~~~~~~-~~~-------~~v~~~~~~~-~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
.++|+.+-.++. |++ .....+.+.. +|+ .++.++.+|.++++|.++|+.+....
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 899998888775 321 0011122333 443 78888899999999999998887654
No 420
>PHA02713 hypothetical protein; Provisional
Probab=95.22 E-value=0.63 Score=55.24 Aligned_cols=185 Identities=12% Similarity=0.109 Sum_probs=95.1
Q ss_pred cCCCeEEEEe-C------CeEEEEECCCceEEE--EeeCCCCCeeEEEEcCCCCCEEEEEeCCC-----cEEEEecccc-
Q 001190 841 KNDSYVMSAT-G------GKISLFNMMTFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVD- 905 (1128)
Q Consensus 841 ~dg~~la~~~-d------g~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~- 905 (1128)
-++.+++.|+ + ..+..||..+.+-.. .+....... +++.. ++++.+.|+.++ ++..||..+.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 3667767665 3 237788887664321 111111112 22222 788888898764 4888998765
Q ss_pred -eeeecccccccCeeEEEEcCCCCEEEEEcCCC-----------------------cEEEEECCCCcccceeEEeecCCC
Q 001190 906 -EVKSKLKGHQKRITGLAFSTSLNILVSSGADA-----------------------QLCVWSIDTWEKRKSVTIHIPAGK 961 (1128)
Q Consensus 906 -~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~ 961 (1128)
..+..+.........++ -+|++.+.||.++ .+..||..+.+=....+.. ..
T Consensus 379 W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~- 453 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TG- 453 (557)
T ss_pred EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC--cc-
Confidence 23333322212222222 3678888887653 3667777664321111110 00
Q ss_pred CCCCccEEEEcCCCCEEEEEe-c------CeEEEEecCC-cccc--cccccCCCCCCCeEEEEEeeCCCEEEEEecCC--
Q 001190 962 TPTGDTRVQFNADQVRMLVVH-E------TQLAIYDASK-MERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCDG-- 1029 (1128)
Q Consensus 962 ~~~~v~~v~~s~d~~~l~~~~-d------~~i~v~d~~~-~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg-- 1029 (1128)
..-.+++ .-+|+..++|+ + ..+..||..+ .+-. ..+... ......+ .-+|++.++|+.||
T Consensus 454 --r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~---r~~~~~~--~~~~~iyv~Gg~~~~~ 525 (557)
T PHA02713 454 --TIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR---LSALHTI--LHDNTIMMLHCYESYM 525 (557)
T ss_pred --cccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc---cccceeE--EECCEEEEEeeeccee
Confidence 1111222 23455555543 2 2467899887 4332 222211 1222222 23788888999888
Q ss_pred cEEEEecCCCce
Q 001190 1030 NIGVFDADTLRL 1041 (1128)
Q Consensus 1030 ~i~vwd~~~~~~ 1041 (1128)
.+..||..+.+-
T Consensus 526 ~~e~yd~~~~~W 537 (557)
T PHA02713 526 LQDTFNVYTYEW 537 (557)
T ss_pred ehhhcCcccccc
Confidence 788888887664
No 421
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=1.2 Score=48.19 Aligned_cols=135 Identities=11% Similarity=0.191 Sum_probs=87.7
Q ss_pred cccCCCCCcceEEeec--CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDDLPRTVAVSLH--QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~--h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
-|.+......+...+. .+++|.++.||+|.+ ++|+--.+.+|.+++....+...... ...+.
T Consensus 47 gvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~ 110 (657)
T KOG2377|consen 47 GVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKT 110 (657)
T ss_pred EEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhcc
Confidence 3444433334444443 677999999999998 88999999999999985433221100 01222
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
.+..|....|+.. .-+|.....| +.+|.+...+ +..+..+.|...|.-..|.++....+|+|+-..+++.=+.
T Consensus 111 k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~ 183 (657)
T KOG2377|consen 111 KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH 183 (657)
T ss_pred CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence 3456889999866 6777776666 7788776533 2222456789999999999999864455543444444444
No 422
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.17 E-value=0.053 Score=52.98 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=67.2
Q ss_pred CeEEEE-eCCeEEEEECCCceEEE-EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-cCeeE
Q 001190 844 SYVMSA-TGGKISLFNMMTFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRITG 920 (1128)
Q Consensus 844 ~~la~~-~dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~ 920 (1128)
.-+++| ++|.|.+|...-.-... .+..-...|-+..-.-.++.+..+++.||.|+.|++.-++.+...-.|. .++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 344455 48999999876221111 1111122233332222355688999999999999999998888887787 56666
Q ss_pred EEEcCCCCEEEEE--cCCCcEEEEECCC
Q 001190 921 LAFSTSLNILVSS--GADAQLCVWSIDT 946 (1128)
Q Consensus 921 l~~s~d~~~l~s~--~~Dg~i~iwd~~~ 946 (1128)
+..+..++.++++ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 6666666777776 7777777777765
No 423
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.14 E-value=0.063 Score=52.46 Aligned_cols=107 Identities=10% Similarity=0.086 Sum_probs=59.2
Q ss_pred EEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE-EecCeEEEEecCCcccccccccCCCCCC
Q 001190 930 LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSA 1008 (1128)
Q Consensus 930 l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~ 1008 (1128)
|..-+.||.|+-+++..-+.-..... .+ ... ...-.-+..+++ +.++.|++|...-........... ..
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~----~~--~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~--~e 102 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSER----FI--DEG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG--EE 102 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhh----hh--hcc--eeecccCceEEeecccceEEEecCCccchHHHhhhcc--cc
Confidence 44456788888877765321100000 00 001 111122233444 469999999987433332222211 23
Q ss_pred CeEEE-EEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 1009 PISCA-VYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1009 ~v~~l-~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.|.++ .-..++.+..++..||.|+-|+++-++.+....
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred cceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 33333 233356688899999999999999888877766
No 424
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.12 E-value=0.24 Score=53.09 Aligned_cols=160 Identities=13% Similarity=0.067 Sum_probs=100.1
Q ss_pred CCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEE-EEee-CCCC----Cee-EEEEcCCCCCEEEEEeCCCcEEEE-e
Q 001190 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVM-TTFM-SPPP----AST-FLAFHPQDNNIIAIGTEDSTIHIY-N 901 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~-~~~~-~~~~----~v~-~l~~s~~d~~~lasg~~dg~v~iw-d 901 (1128)
....+..+-..|||+.+..-+..++.++++.+.... +++- ...+ .|+ ++..-. ++.-+.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456688889999999999888888999988754331 1111 1111 233 233333 67778889999998877 4
Q ss_pred cccc-e----eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCC
Q 001190 902 VRVD-E----VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 902 ~~~~-~----~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
+..+ . .++.++-...++..+.--.+.+-+++-+..|++.++.-...+..-..+.. ....-+++||.+.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~-------~~~~~~~~Sp~~~ 370 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY-------QAPQLVAMSPNQA 370 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh-------cCcceeeeCcccc
Confidence 4322 1 12222222233444433334556777788888887765443322111111 4566789999999
Q ss_pred EEEEEecCeEEEEecCCcccc
Q 001190 977 RMLVVHETQLAIYDASKMERI 997 (1128)
Q Consensus 977 ~l~~~~d~~i~v~d~~~~~~~ 997 (1128)
++++-+.++++++.+++...-
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred hheeecCCceEEEEecCCCCC
Confidence 999999999999998866543
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.95 E-value=3.4 Score=40.81 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=77.8
Q ss_pred ccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCC--------CCeEEEeccCCCCccEEEEEeccCcEE
Q 001190 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE--------APVYSICPHHKENIQFIFSTAIDGKIK 521 (1128)
Q Consensus 451 ~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~--------~~v~~~~~~~~~~~~~l~s~~~dg~i~ 521 (1128)
..+.++-..+|+|+ +.+-.-.|-. -+.. ..|.+-.-+.+|. +--+.++|..+ .-.+.++-+.+-+|.
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--eeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEEe
Confidence 45667778899998 4322111211 1222 2222222233332 22245666532 224455566777888
Q ss_pred EEecCCCCc-------eeeecC----CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeE
Q 001190 522 AWLYDTMGS-------RVDYDA----PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1128)
Q Consensus 522 ~wd~~~~~~-------~~~~~~----~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 590 (1128)
-||.+-... ...+.. .....-.+++..+|.+.+++. ..++|...|..+|+.+.++.-... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~----ng~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF----NGGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe----cCcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 888543222 111211 111233455667787777766 378899999999999999988865 8999
Q ss_pred EEEeCC
Q 001190 591 VQFDTT 596 (1128)
Q Consensus 591 ~~~~~~ 596 (1128)
+||...
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 999744
No 426
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=0.71 Score=55.66 Aligned_cols=143 Identities=8% Similarity=0.086 Sum_probs=89.9
Q ss_pred CeeEEEEcCCCCEEEE--EcCCCcEEEEECCCCcccc---e--eEEeecCCCCCCCccEEEEcCCCCEE--EEEecCeEE
Q 001190 917 RITGLAFSTSLNILVS--SGADAQLCVWSIDTWEKRK---S--VTIHIPAGKTPTGDTRVQFNADQVRM--LVVHETQLA 987 (1128)
Q Consensus 917 ~V~~l~~s~d~~~l~s--~~~Dg~i~iwd~~~~~~~~---~--~~~~~~~~~~~~~v~~v~~s~d~~~l--~~~~d~~i~ 987 (1128)
+|..+...+|+...+. .+.+-.|..||+.+-..-. . +..+...........++.|.|.-... +...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4566677778764443 3445578999997643222 1 11111111122455677787764333 334688888
Q ss_pred EEecCCccccccc-ccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEE
Q 001190 988 IYDASKMERIRQW-TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1066 (1128)
Q Consensus 988 v~d~~~~~~~~~~-~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1128)
+..+........- .. ....++++|||.|+.++.|...|++.-|.. +++.+..+..+... ...+|++
T Consensus 182 V~~~~~~~~~v~s~p~----t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~--------e~yrvl~ 248 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPV----TNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVE--------ENYRVLS 248 (1405)
T ss_pred hhhhhhhhhhhcccCc----ccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcC--------CCcceeE
Confidence 8887654433322 22 677899999999999999999999998875 56665655533322 2467899
Q ss_pred EEEecC
Q 001190 1067 VAAHPL 1072 (1128)
Q Consensus 1067 ~~~~p~ 1072 (1128)
|.|...
T Consensus 249 v~Wl~t 254 (1405)
T KOG3630|consen 249 VTWLST 254 (1405)
T ss_pred EEEecc
Confidence 999875
No 427
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.88 E-value=0.62 Score=52.32 Aligned_cols=156 Identities=12% Similarity=0.172 Sum_probs=90.4
Q ss_pred CCeeEEEEcCCCCCEEEEEe--CCCcEEEEecccceeeecccccccCeeEEEEcCCC----CEEEEEcCCCcEEEEECCC
Q 001190 873 PASTFLAFHPQDNNIIAIGT--EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL----NILVSSGADAQLCVWSIDT 946 (1128)
Q Consensus 873 ~~v~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~----~~l~s~~~Dg~i~iwd~~~ 946 (1128)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.++.|.|-+ ..|+..-..+.|.||.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3678889974 444444432 333333321 2334344 459999999853 2455566778899999862
Q ss_pred -----CcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeE-EEEecCCcccccccccCCCCCCCeEEEEEeeCCC
Q 001190 947 -----WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL-AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 1020 (1128)
Q Consensus 947 -----~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i-~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 1020 (1128)
++.+......+.+ ..+.-...+.|+|....|++-....+ .++++......-...... .+.|.|.+|..||+
T Consensus 92 s~~e~~K~l~sQtcEi~e-~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~--~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIRE-PFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT--SGLIHCACWTKDGQ 168 (671)
T ss_pred CccccccceeeeeeeccC-CcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC--CceEEEEEecCcCC
Confidence 2222222222211 11234567889999998888543333 445554333222222211 78899999999999
Q ss_pred EEEEEe-cCCcEEEEecCCC
Q 001190 1021 LVFATF-CDGNIGVFDADTL 1039 (1128)
Q Consensus 1021 ~l~t~~-~dg~i~vwd~~~~ 1039 (1128)
.|+++- ..=.-+|||-...
T Consensus 169 RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEEeCCeEEEEEecCchh
Confidence 887654 3445789986544
No 428
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.68 E-value=8.5 Score=43.46 Aligned_cols=311 Identities=13% Similarity=0.064 Sum_probs=147.7
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-...|.++.|...|.+ -+|+.|| +..||..+++.+....- .-..+|..+.-+-.|+ |-
T Consensus 163 ~d~~V~aLv~D~~g~l--WvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg~-LW 220 (671)
T COG3292 163 KDTPVVALVFDANGRL--WVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQGR-LW 220 (671)
T ss_pred cCccceeeeeeccCcE--EEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcCc-EE
Confidence 4557899999999973 4455665 56778777776542110 0113455555554554 45
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEE-ecCCC--CCeEE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHE--APVYS 499 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~-~~~h~--~~v~~ 499 (1128)
.|+.+| |.+.+.++.+..... ..-..+.|..+.=..+|. +-.|+..|-.+.=-..+..... .+-|. ..|.+
T Consensus 221 VGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vns 294 (671)
T COG3292 221 VGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNS 294 (671)
T ss_pred EEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCccccccc
Confidence 576666 677776652211100 001223344444434443 4445444433221122222111 12221 23444
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcC--CCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
+.. +.+| -|.+++.+|.+++=+-+-..........+..+...+.+| .+..+-... ..+.+.+-+-.+|..+
T Consensus 295 L~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~v 367 (671)
T COG3292 295 LWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGELV 367 (671)
T ss_pred eee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcEE
Confidence 433 3343 466777777665533221111111111122222222222 111111111 1234555556667766
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC-CeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw 656 (1128)
+......+..++.+++.. +..+-.|+...-+..|+.++ +........ -..++|..+.-.|+++ |..|+.+|.++.
T Consensus 368 ~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dns-LWIGTs~Glvk~- 443 (671)
T COG3292 368 RSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGTSGGLVKR- 443 (671)
T ss_pred EEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCC-EEEeccCCeEec-
Confidence 665555555677777776 44566666665566677666 332222222 2244678888888887 778888887654
Q ss_pred EcccCccccccccCCccccccCcceeeeeeccccccc
Q 001190 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1128)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 693 (1128)
+.+.+ +....+.........+.+..+.+.|+|++-+
T Consensus 444 ~pe~~-~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~ 479 (671)
T COG3292 444 DPESG-RVLNLLNPGSHGLDGSRVEQLGLGPDGRLWL 479 (671)
T ss_pred Ccccc-chhcccccccCcCCcchhhhhccCCCCceEE
Confidence 22221 1111111111111223366677777776643
No 429
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.66 E-value=7.4 Score=41.60 Aligned_cols=233 Identities=10% Similarity=0.010 Sum_probs=109.4
Q ss_pred CeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEee---CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee-e
Q 001190 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM---SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-K 908 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~ 908 (1128)
...++.|..+ ..+++|..+ +.+...+.|+.-..+. .-.+....+.... ++..++ .+..|.|+.=. +.|+- .
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEEES-STTSSEE
T ss_pred eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEEeC-CCCCCee
Confidence 3667777543 445555555 3344444444332221 1122333333333 333333 34445443321 22221 1
Q ss_pred ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEE
Q 001190 909 SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAI 988 (1128)
Q Consensus 909 ~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v 988 (1128)
.....-.+.+..+..++||++++.+..-....-||-.... ..+... .....+..|.|+|++.+.+++..+.|+.
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r---~~~~riq~~gf~~~~~lw~~~~Gg~~~~ 211 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNR---NSSRRIQSMGFSPDGNLWMLARGGQIQF 211 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE-----SSS-EEEEEE-TTS-EEEEETTTEEEE
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEcc---CccceehhceecCCCCEEEEeCCcEEEE
Confidence 1223344778899999999999888766666677654311 111111 1126789999999999888888888888
Q ss_pred Ee-cCCcccccc-cccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEE
Q 001190 989 YD-ASKMERIRQ-WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1066 (1128)
Q Consensus 989 ~d-~~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1128)
=+ ....+.... ..........+..++|.++++..++|+ .|.+ +.....|+.-.+.... ..-+.....
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~---------~~~~~n~~~ 280 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVG---------ENVPSNLYR 280 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGG---------TTSSS---E
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccc---------cCCCCceEE
Confidence 77 222222111 111111156689999999988777665 4543 3355566655554411 112234577
Q ss_pred EEEecCCCCEEEEEECCCcEEEE
Q 001190 1067 VAAHPLEPNQFAIGLTDGSVKVM 1089 (1128)
Q Consensus 1067 ~~~~p~~~~~l~s~~~dg~i~iW 1089 (1128)
|.|.+. +.-++-+.+|.|--|
T Consensus 281 i~f~~~--~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFVNP--DKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEET--TEEEEE-STTEEEEE
T ss_pred EEEcCC--CceEEECCCcEEEEe
Confidence 888763 566667778887544
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=6.2 Score=46.05 Aligned_cols=223 Identities=13% Similarity=0.141 Sum_probs=113.3
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1128)
-|...+ ..........-+++-+|..+|....=++ +..-.|+|++.. |..+.. ++-.|.
T Consensus 27 ~W~l~d-l~~~~fa~Ap~gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~------------------~~w~~~ 84 (829)
T KOG2280|consen 27 KWPLTD-LYYVYFACAPFGGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGR------------------ILWKHG 84 (829)
T ss_pred CCcccc-cceeEEEecccCCceEEEeccccccccc--ccceeEEEEecc-ccchHH------------------HHhcCC
Confidence 455532 2333333444556667777775321122 344568899864 555432 122233
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceec-eeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g 484 (1128)
.+..+.||.+..+| ....+|+++||++-... +... .-.......|..+.|...|= .+.+. +|.+.+-. .+.
T Consensus 85 -~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~ 157 (829)
T KOG2280|consen 85 -ELIGMGWSDDEELI-CVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEE 157 (829)
T ss_pred -CeeeecccCCceEE-EEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCc
Confidence 88899999776555 56799999999986532 2211 01123344577777777663 33333 45555444 333
Q ss_pred CeEEEecC---CCCCeEEEeccCC-CCccEEEEEe-ccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 485 RKLFNFEG---HEAPVYSICPHHK-ENIQFIFSTA-IDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 485 ~~~~~~~~---h~~~v~~~~~~~~-~~~~~l~s~~-~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
..+.++.. ...+-.|-..... .....++-.. ..+ ..++..+.... ...+......+..+.+||+.++|+.-..
T Consensus 158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~ 236 (829)
T KOG2280|consen 158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE 236 (829)
T ss_pred chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec
Confidence 23333322 1111111111111 0111111111 011 01121122111 1122223456888999999999988763
Q ss_pred ccCCCceEEEEeCCCCceeeEeccc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGF 583 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1128)
.|.|.+-+.+..+....+...
T Consensus 237 ----~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 237 ----TGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred ----CCcEEEEecchhhhhhccCCC
Confidence 888888888877777766643
No 431
>PRK13684 Ycf48-like protein; Provisional
Probab=94.27 E-value=10 Score=41.69 Aligned_cols=279 Identities=11% Similarity=0.071 Sum_probs=131.3
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-...+.+|+|..+.+ .+|+|. +| .||...++-.- |...... +......+.++.|.++ ..++
T Consensus 44 ~~~~l~~v~F~d~~~-g~avG~-~G--~il~T~DgG~t-------W~~~~~~-------~~~~~~~l~~v~~~~~-~~~~ 104 (334)
T PRK13684 44 TEANLLDIAFTDPNH-GWLVGS-NR--TLLETNDGGET-------WEERSLD-------LPEENFRLISISFKGD-EGWI 104 (334)
T ss_pred CCCceEEEEEeCCCc-EEEEEC-CC--EEEEEcCCCCC-------ceECccC-------CcccccceeeeEEcCC-cEEE
Confidence 355789999986555 667774 44 34555443221 1110000 1112334778888754 3344
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec-CCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~-~h~~~v~~~~ 501 (1128)
+ +..+.|.. .-+.|+.-.....-....+....+....++. .++. +..|.|..=+..|+.=..+. .-.+.+.++.
T Consensus 105 ~-G~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~-g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~ 179 (334)
T PRK13684 105 V-GQPSLLLH-TTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AEMA-TNVGAIYRTTDGGKNWEALVEDAAGVVRNLR 179 (334)
T ss_pred e-CCCceEEE-ECCCCCCCeEccCCcCCCCCceEEEEECCCc--ceee-eccceEEEECCCCCCceeCcCCCcceEEEEE
Confidence 4 34443222 2333433332111000111122232222333 2333 33454433323343322222 2245677888
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceee--ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
+.+ ++.++ ..+..|.+.. ..+....... .......++++.+.++++.++++. .+.+++=....|..-..
T Consensus 180 ~~~--~g~~v-~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 180 RSP--DGKYV-AVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSK 250 (334)
T ss_pred ECC--CCeEE-EEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCcccc
Confidence 755 44444 4444565432 1122222221 223345788999999998877653 45454322333332111
Q ss_pred eccc---cCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec-CCCCCCcceEEEcCCCCEEEEEEcCCcEEE
Q 001190 580 YAGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1128)
Q Consensus 580 ~~~~---~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 655 (1128)
.... ....+..+.+.+++. ++.++.+|.+. .....++.-..... ..-....+.+.|..+++.+++| ..|.|.-
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~ 327 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLR 327 (334)
T ss_pred ccCCccccccceeeEEEcCCCC-EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEE
Confidence 1111 112356678888765 55566677665 34455554444332 1112246777777776666554 5677766
Q ss_pred EE
Q 001190 656 LA 657 (1128)
Q Consensus 656 w~ 657 (1128)
|+
T Consensus 328 ~~ 329 (334)
T PRK13684 328 YV 329 (334)
T ss_pred ec
Confidence 64
No 432
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.15 E-value=11 Score=42.26 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=78.8
Q ss_pred CCeeEEEeccCCCeEEEEe------------C-CeEEEEECCC--ce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC
Q 001190 832 EAVPCIALSKNDSYVMSAT------------G-GKISLFNMMT--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTED 894 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~------------d-g~i~vwd~~~--~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d 894 (1128)
.....|+|.++|+++++-. . +.|.+++-.+ |+ ....+...-.....+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4467899999999887742 2 3677776542 33 2234443344568899988 77 444 3433
Q ss_pred CcEEEE-eccc-------ce-eeecccc----cccCeeEEEEcCCCCEEEEEcCC-------------------CcEEEE
Q 001190 895 STIHIY-NVRV-------DE-VKSKLKG----HQKRITGLAFSTSLNILVSSGAD-------------------AQLCVW 942 (1128)
Q Consensus 895 g~v~iw-d~~~-------~~-~~~~l~~----h~~~V~~l~~s~d~~~l~s~~~D-------------------g~i~iw 942 (1128)
.|..| |... .+ .+..+.. +......++|.|||.+.++.+.. |.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 34434 4321 11 1222322 23447789999999977765521 334444
Q ss_pred ECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE
Q 001190 943 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 981 (1128)
Q Consensus 943 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 981 (1128)
+.++++.. .. ..+ ......++|+++|.++++-
T Consensus 170 ~pdg~~~e----~~-a~G--~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 170 NPDGGKLR----VV-AHG--FQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ecCCCeEE----EE-ecC--cCCCccceECCCCCEEEEc
Confidence 44443311 11 111 1445789999999987763
No 433
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.09 E-value=0.04 Score=63.80 Aligned_cols=199 Identities=10% Similarity=0.138 Sum_probs=113.0
Q ss_pred CCCCeeEEEeccCC-CeEEEEeCCeEEEEECC--CceEEEEee-----CCCCCeeEEEEcCC--CCCEEEEEeCCCcEEE
Q 001190 830 LEEAVPCIALSKND-SYVMSATGGKISLFNMM--TFKVMTTFM-----SPPPASTFLAFHPQ--DNNIIAIGTEDSTIHI 899 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg-~~la~~~dg~i~vwd~~--~~~~~~~~~-----~~~~~v~~l~~s~~--d~~~lasg~~dg~v~i 899 (1128)
..+.+-.+.|.+.. ..+. -.-|.+.|||++ .|+....+. .....+.-+.|.|. +.-++..+..+++|++
T Consensus 131 f~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l 209 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL 209 (1283)
T ss_pred CCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence 56667677764321 1111 112678888875 343322221 11222333333331 4567778888899998
Q ss_pred EecccceeeecccccccCeeEEE-----------EcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccE
Q 001190 900 YNVRVDEVKSKLKGHQKRITGLA-----------FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTR 968 (1128)
Q Consensus 900 wd~~~~~~~~~l~~h~~~V~~l~-----------~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 968 (1128)
....+... ..+.+|+..++.++ .||||+.+|.++.||.+++|.+.-..+....+++....|...+..|
T Consensus 210 L~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC 288 (1283)
T KOG1916|consen 210 LNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVC 288 (1283)
T ss_pred eeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCcee
Confidence 77665433 55667887776654 5899999999999999999988654444455566666665433333
Q ss_pred EEEcCC-------CCEE--EEEe--cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCE------------EEEE
Q 001190 969 VQFNAD-------QVRM--LVVH--ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL------------VFAT 1025 (1128)
Q Consensus 969 v~~s~d-------~~~l--~~~~--d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~------------l~t~ 1025 (1128)
.-|+.. +.+. +++. +..+++|.....++...+. ...|..+. -+||+. ++..
T Consensus 289 ~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r 362 (1283)
T KOG1916|consen 289 WLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSR 362 (1283)
T ss_pred eeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHHHHh
Confidence 334432 2222 2232 5678888877666652221 23333343 334431 2234
Q ss_pred ecCCcEEEEec
Q 001190 1026 FCDGNIGVFDA 1036 (1128)
Q Consensus 1026 ~~dg~i~vwd~ 1036 (1128)
+-++.|.+|.=
T Consensus 363 ~v~~~i~~~qn 373 (1283)
T KOG1916|consen 363 SVDGTIKIWQN 373 (1283)
T ss_pred hhHHHHHHhhc
Confidence 56778888853
No 434
>PHA03098 kelch-like protein; Provisional
Probab=94.08 E-value=1.6 Score=52.18 Aligned_cols=194 Identities=10% Similarity=0.108 Sum_probs=95.8
Q ss_pred CCCEEEEEeCCC------cEEEEecccceeee--cccccccCeeEEEEcCCCCEEEEEcCC-----CcEEEEECCCCccc
Q 001190 884 DNNIIAIGTEDS------TIHIYNVRVDEVKS--KLKGHQKRITGLAFSTSLNILVSSGAD-----AQLCVWSIDTWEKR 950 (1128)
Q Consensus 884 d~~~lasg~~dg------~v~iwd~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l~s~~~D-----g~i~iwd~~~~~~~ 950 (1128)
++.+++.|+.++ .+..||..+.+-.. .+.........+. -+++.++.||.+ ..+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556666666442 46778877654322 1211111122222 367777888865 34677887765421
Q ss_pred ceeEEeecCCCCCCCccEEEEcCCCCEEEEEe---c----CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEE
Q 001190 951 KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---E----TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 1023 (1128)
Q Consensus 951 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d----~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1023 (1128)
...... ....-..++ .-+++.++.|+ + ..+..||..+.+-...-.... ......+...++++.+
T Consensus 372 ~~~~lp-----~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~---~r~~~~~~~~~~~iyv 442 (534)
T PHA03098 372 EEPPLI-----FPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI---SHYGGCAIYHDGKIYV 442 (534)
T ss_pred eCCCcC-----cCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc---cccCceEEEECCEEEE
Confidence 111111 001111222 23455555543 1 458889987654332211111 1111122334677666
Q ss_pred EEecC--------CcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC-----CcEEEEc
Q 001190 1024 ATFCD--------GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVME 1090 (1128)
Q Consensus 1024 t~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-----g~i~iWd 1090 (1128)
.|+.+ ..+.+||..+++-... .. .+.. +... ..+.+ ++.+++.||.+ +.+.++|
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~---~~~~---r~~~---~~~~~---~~~iyv~GG~~~~~~~~~v~~yd 509 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTEL-SS---LNFP---RINA---SLCIF---NNKIYVVGGDKYEYYINEIEVYD 509 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeC-CC---CCcc---cccc---eEEEE---CCEEEEEcCCcCCcccceeEEEe
Confidence 77643 2388899888754332 11 1111 1111 11222 46778888765 4688888
Q ss_pred CCCCCCCcccCCC
Q 001190 1091 PSESEGKWGVSPP 1103 (1128)
Q Consensus 1091 ~~~~~~~w~~~~p 1103 (1128)
+.+.+ |...++
T Consensus 510 ~~~~~--W~~~~~ 520 (534)
T PHA03098 510 DKTNT--WTLFCK 520 (534)
T ss_pred CCCCE--EEecCC
Confidence 88765 976543
No 435
>PHA03098 kelch-like protein; Provisional
Probab=93.94 E-value=1.4 Score=52.68 Aligned_cols=187 Identities=13% Similarity=0.057 Sum_probs=91.7
Q ss_pred cCCCeEEEEe-C------CeEEEEECCCceEEEEeeCC--CCCeeEEEEcCCCCCEEEEEeCC-----CcEEEEecccce
Q 001190 841 KNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGTED-----STIHIYNVRVDE 906 (1128)
Q Consensus 841 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~--~~~v~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~ 906 (1128)
.++.+++.|+ + ..+..||..+.+-...-.-. ......+.+ ++++++.|+.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4556666664 2 24778888776543211111 111222222 67788888865 347778877653
Q ss_pred e--eecccccccCeeEEEEcCCCCEEEEEcCC------CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE
Q 001190 907 V--KSKLKGHQKRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 907 ~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 978 (1128)
- ...+....... ++ ..-++++.+.||.+ ..+..||..+++-...... ... ....++ ..-+++.+
T Consensus 370 W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~---r~~~~~-~~~~~~iy 441 (534)
T PHA03098 370 WREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PIS---HYGGCA-IYHDGKIY 441 (534)
T ss_pred eeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--Ccc---ccCceE-EEECCEEE
Confidence 2 22222111111 12 22356777777732 3578888876542111111 101 111122 22345555
Q ss_pred EEEe-c--------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCce
Q 001190 979 LVVH-E--------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRL 1041 (1128)
Q Consensus 979 ~~~~-d--------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~~ 1041 (1128)
+.|+ . ..+.+||..+.+-...-..... ......+ ..++++++.|+.+ +.|.+||.++.+-
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 5542 1 2388899887654322111110 1111122 2377777777754 4688899887654
No 436
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.85 E-value=2 Score=50.34 Aligned_cols=119 Identities=11% Similarity=0.135 Sum_probs=76.3
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc-ccccCeeEEEEc--CCCCEEEEEcCCCcEEEEECC--
Q 001190 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-GHQKRITGLAFS--TSLNILVSSGADAQLCVWSID-- 945 (1128)
Q Consensus 871 ~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~l~s~~~Dg~i~iwd~~-- 945 (1128)
.....+-+.-|. -++..++.+...++.|||...+....+-. ...+.|.++.|. |||+.+++.|-.+.|.++.-.
T Consensus 28 ~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 28 GISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 334455555555 55555555556689999999886432221 346889999885 789999999999999998542
Q ss_pred ---C-CcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEec
Q 001190 946 ---T-WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDA 991 (1128)
Q Consensus 946 ---~-~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~ 991 (1128)
. +..-..+.......+++.++....|.++|.+++ +.++++.|+|-
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 1 111111111112334446788999999997654 45677888774
No 437
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.85 E-value=9.3 Score=39.58 Aligned_cols=162 Identities=11% Similarity=0.083 Sum_probs=104.8
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..|-...|.++.|+|+.+.|.+......-.||=-..|+.++.+ .+.+ -..-..+++..+|+ ++++--.++.+.++.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g-~~DpE~Ieyig~n~--fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTG-FSDPETIEYIGGNQ--FVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-cccc-cCChhHeEEecCCE--EEEEehhcceEEEEE
Confidence 3444556999999999999999988888888877788877754 3444 33456788888888 788888888888887
Q ss_pred -cCCCeEE-------Eec--CC-CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec---CC-------CCe
Q 001190 482 -LSGRKLF-------NFE--GH-EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---AP-------GHW 540 (1128)
Q Consensus 482 -~~g~~~~-------~~~--~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~-------~~~ 540 (1128)
..+..+. .+. .+ ......++|.+ ..+.|+.+-+-.-+.+|.+.......... .+ -..
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~--~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP--VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCC--CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 3332211 111 12 44567889866 44678888887777777665332111111 11 124
Q ss_pred EEEEEEcCCCCeEEEeeeccCCCceEEEEeCC
Q 001190 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 541 i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
+.++.|.+....+++-+. +.+.+.-.|..
T Consensus 235 vSgl~~~~~~~~LLVLS~---ESr~l~Evd~~ 263 (316)
T COG3204 235 VSGLEFNAITNSLLVLSD---ESRRLLEVDLS 263 (316)
T ss_pred cccceecCCCCcEEEEec---CCceEEEEecC
Confidence 677888876665555542 46666666654
No 438
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.71 E-value=16 Score=44.34 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=55.8
Q ss_pred CCCCeeEEEeccCCCeEEEEeCCeEEEEECCCc-eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee
Q 001190 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 908 (1128)
..-.|..+.++++|++||..+...|.|..+... -....+.+....|.|=.+.- +..++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~-------------------- 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF-------------------- 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence 445799999999999999988766776666421 11111222222222222211 11111
Q ss_pred ecccccccCeeEEEEcCC---CCEEEEEcCCCcEEEEECCCC
Q 001190 909 SKLKGHQKRITGLAFSTS---LNILVSSGADAQLCVWSIDTW 947 (1128)
Q Consensus 909 ~~l~~h~~~V~~l~~s~d---~~~l~s~~~Dg~i~iwd~~~~ 947 (1128)
...+...|..+.|+|. +..|+.-..|+++|+||+...
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 0123456778888876 467777788888888888653
No 439
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.69 E-value=10 Score=39.56 Aligned_cols=260 Identities=13% Similarity=0.078 Sum_probs=127.3
Q ss_pred cceEEEcCCCCEEEEEEcCCcEEEEEcccC------ccccccccCCccccccCcceeeeeecccccccccCCCCcceecc
Q 001190 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG------LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~ 705 (1128)
-+.++++|.+.+.++....+...+||.+.. ..+.-.+............+.+.|.......+.....
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~------- 97 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI------- 97 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc-------
Confidence 478999999988888888889999998622 1111111111111112234455555444333221110
Q ss_pred cCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecC--cceEEEee
Q 001190 706 SSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS--AVGLLALG 783 (1128)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~--g~~l~~~~ 783 (1128)
.....++.++.||+|.-|.............+.+.. .....-...+++... +.+|..+.
T Consensus 98 ------------------~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~-s~~gavYkGLAi~~~~~~~~LYaad 158 (336)
T TIGR03118 98 ------------------TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDA-SQQGNVYKGLAVGPTGGGDYLYAAN 158 (336)
T ss_pred ------------------ccceeEEEEeCCceEEeecCcCCcccccccEEEEcc-CCCcceeeeeEEeecCCCceEEEec
Confidence 011235677888999999853221100011122211 111222345666543 45555443
Q ss_pred -ccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEE-eCCeEEEEECCC
Q 001190 784 -SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-TGGKISLFNMMT 861 (1128)
Q Consensus 784 -~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~dg~i~vwd~~~ 861 (1128)
.+++|.++|-.-......+...-... ..+..-. .+..+...--|+-..-.++++.=+.+ .-|.|-+||+ .
T Consensus 159 F~~g~IDVFd~~f~~~~~~g~F~DP~i------PagyAPF-nIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~ 230 (336)
T TIGR03118 159 FRQGRIDVFKGSFRPPPLPGSFIDPAL------PAGYAPF-NVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-N 230 (336)
T ss_pred cCCCceEEecCccccccCCCCccCCCC------CCCCCCc-ceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-C
Confidence 47888888744332211111110000 0000000 00000000011111112222221122 2467999998 4
Q ss_pred ceEEEEeeC--CCCCeeEEEEcC-----CCCCEEEEEeCCCcEEEEecccceeeeccccccc------CeeEEEEcC
Q 001190 862 FKVMTTFMS--PPPASTFLAFHP-----QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK------RITGLAFST 925 (1128)
Q Consensus 862 ~~~~~~~~~--~~~~v~~l~~s~-----~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~------~V~~l~~s~ 925 (1128)
|..++.+.. .-..-..|+..| -.+.+|+---.||+|..||..+++.+..+....+ ..+.|+|-.
T Consensus 231 G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 231 GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 677777642 223445666654 2567887777899999999999988877765433 456777754
No 440
>PHA02790 Kelch-like protein; Provisional
Probab=93.27 E-value=2.8 Score=48.99 Aligned_cols=183 Identities=11% Similarity=-0.008 Sum_probs=89.4
Q ss_pred CCCeEEEEe-C-----CeEEEEECCCceEEE--EeeCCCCCeeEEEEcCCCCCEEEEEeCC--CcEEEEecccce--eee
Q 001190 842 NDSYVMSAT-G-----GKISLFNMMTFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGTED--STIHIYNVRVDE--VKS 909 (1128)
Q Consensus 842 dg~~la~~~-d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~l~~s~~d~~~lasg~~d--g~v~iwd~~~~~--~~~ 909 (1128)
++.++++|+ + ..+..||..+.+-.. .+....... +++ .- ++.+.+.|+.+ ..+..||..+++ .+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455556665 2 247778887655332 221111112 222 23 77888888864 357888876542 223
Q ss_pred cccccccCeeEEEEcCCCCEEEEEcCCC---cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeE
Q 001190 910 KLKGHQKRITGLAFSTSLNILVSSGADA---QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 986 (1128)
Q Consensus 910 ~l~~h~~~V~~l~~s~d~~~l~s~~~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i 986 (1128)
.+....... ....-+|+..+.||.++ .+..||..+.+=.. .. .......-. .+..-+|+..++| |.+
T Consensus 348 ~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~---~~--~m~~~r~~~-~~~~~~~~IYv~G--G~~ 417 (480)
T PHA02790 348 SLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF---GP--STYYPHYKS-CALVFGRRLFLVG--RNA 417 (480)
T ss_pred CCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe---CC--CCCCccccc-eEEEECCEEEEEC--Cce
Confidence 332111111 12233678888887654 46778876643211 11 000001111 2223455555555 457
Q ss_pred EEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCc
Q 001190 987 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLR 1040 (1128)
Q Consensus 987 ~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~ 1040 (1128)
.+||..+.+-...-..... ...... ..-+|+..++|+.+ ..|.+||.++++
T Consensus 418 e~ydp~~~~W~~~~~m~~~-r~~~~~--~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYP-RDNPEL--IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEecCCCCcEeEcCCCCCC-ccccEE--EEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 7888876543322111110 111222 23477877778754 357777777654
No 441
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.20 E-value=3.9 Score=46.03 Aligned_cols=205 Identities=15% Similarity=0.094 Sum_probs=107.7
Q ss_pred EEEEeCCCcEEEEecccceeeeccccc--ccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCC
Q 001190 888 IAIGTEDSTIHIYNVRVDEVKSKLKGH--QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 965 (1128)
Q Consensus 888 lasg~~dg~v~iwd~~~~~~~~~l~~h--~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 965 (1128)
+..+..+|.|.-.|..+++.+-....- ...+..-.+..+|+ ++.++.++.+..+|..+|+......... . ..
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~----~~ 144 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S----PY 144 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C----eE
Confidence 444567777777777777654322211 12222223333666 6668888889999998888766555442 0 01
Q ss_pred ccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEec--CCcEEEEecCCCceEE
Q 001190 966 DTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC--DGNIGVFDADTLRLRC 1043 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~--dg~i~vwd~~~~~~~~ 1043 (1128)
...-..-.++..++...++.+...+..+|...-.......-...+..-....++. ++.+.. ++.+.-.|+++|..+.
T Consensus 145 ~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 145 YASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred EecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCCCcceEEEEEccCCcEee
Confidence 1111222344333333567777777777766444322110011111111133444 444444 6678888999999888
Q ss_pred EeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCCCcccCCC
Q 001190 1044 YIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPP 1103 (1128)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~~w~~~~p 1103 (1128)
.......................+. .+..+..++.+|.+...+..+++.+|....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~----v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVY----VDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeecccCcccccccccccCceEE----ECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7431111110000000011111111 1233477888888999999999999999876
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.09 E-value=1.8 Score=52.23 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=62.3
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEecCC----------C--ceEEEeCCCCCCCCcccCCCCccceEEEEEecC--
Q 001190 1007 SAPISCAVYSCNSQLVFATFCDGNIGVFDADT----------L--RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL-- 1072 (1128)
Q Consensus 1007 ~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-- 1072 (1128)
...|..+.++++|++|+..|..| |.|-.+.. | +..|+.. ......+.......+.-+.|+|.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~---~v~~~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTV---PVDERFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEE---EechhhccCCCCceEEEEEEcCCCC
Confidence 56789999999999999888755 44444431 1 1122222 11111222355677899999996
Q ss_pred CCCEEEEEECCCcEEEEcCCCCCCCcccCC
Q 001190 1073 EPNQFAIGLTDGSVKVMEPSESEGKWGVSP 1102 (1128)
Q Consensus 1073 ~~~~l~s~~~dg~i~iWd~~~~~~~w~~~~ 1102 (1128)
++..|+.-..|+++|+||+.+.+.-|-..+
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 257899999999999999998776665543
No 443
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.03 E-value=2.1 Score=50.14 Aligned_cols=110 Identities=14% Similarity=0.181 Sum_probs=73.1
Q ss_pred eeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEec-CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecC-----
Q 001190 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD----- 526 (1128)
Q Consensus 454 v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~----- 526 (1128)
..-+.-+.-++ ..+.-+....+.||| ..+.....-. ...+.|.++.|...++++.+++.+..+.|.++.-.
T Consensus 32 ~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 32 PSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 34444444455 334444456899999 5555433222 35778999999999999999999999999998431
Q ss_pred CCCc----ee--eecC-CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 527 TMGS----RV--DYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 527 ~~~~----~~--~~~~-~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
.... .. .+.. ..++|....|.++|..++.++ +.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 1111 11 1222 336899999999998887663 46788764
No 444
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.02 E-value=18 Score=40.54 Aligned_cols=153 Identities=10% Similarity=0.071 Sum_probs=85.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEecccc--eeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccce
Q 001190 875 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 952 (1128)
Q Consensus 875 v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~ 952 (1128)
...+..++ ++.+++.|..-..++-||--.. +.+ . ......++++.+.+++..++.+ .+|.+ +|....++.-..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~-~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPH-N-RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEe-c-CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34456667 7777776654333333432111 111 1 2234568999999998887755 55654 444444432111
Q ss_pred eEEeecCC-CCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcE
Q 001190 953 VTIHIPAG-KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1031 (1128)
Q Consensus 953 ~~~~~~~~-~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i 1031 (1128)
........ .....+..+.|.+++..++++..|.+.... ..|+.-........-......+.|.++++.+++| .+|.|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 01111111 111457889999999998888887665553 4444433322111115678899998887766655 68877
Q ss_pred EEE
Q 001190 1032 GVF 1034 (1128)
Q Consensus 1032 ~vw 1034 (1128)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 445
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=1.1 Score=49.34 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=68.7
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEe---------cCCCc--eEEEeCCCCCCCCcccCCCCccceEEEEEecCC--
Q 001190 1007 SAPISCAVYSCNSQLVFATFCDGNIGVFD---------ADTLR--LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLE-- 1073 (1128)
Q Consensus 1007 ~~~v~~l~~s~dg~~l~t~~~dg~i~vwd---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-- 1073 (1128)
.-.|..+..|+.|..++..+.+|.+.++= ++.|+ ..|+..+ .....+-.+....+.-.+|+|+.
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~---i~~~~ftss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTP---VAERFFTSSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeec---ccceeeccCCceeeeeccccCCccC
Confidence 55678888999999999999999776653 23342 2233221 11112222345567788999975
Q ss_pred CCEEEEEECCCcEEEEcCCCCCCCcccCCC-CCCCccCC
Q 001190 1074 PNQFAIGLTDGSVKVMEPSESEGKWGVSPP-VDNGILNS 1111 (1128)
Q Consensus 1074 ~~~l~s~~~dg~i~iWd~~~~~~~w~~~~p-~~~~~~~~ 1111 (1128)
...|+.-+.|++||+|++++....|-..+| .-++..+|
T Consensus 180 D~hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~S 218 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNVS 218 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchhhccCCCcCCCCccce
Confidence 678888999999999999998877876533 34444443
No 446
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=92.79 E-value=14 Score=47.47 Aligned_cols=148 Identities=11% Similarity=0.149 Sum_probs=85.2
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
|-..++.|.-+|+|.++ =. .|+.++.||....... .- -..-...++.+.-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~l-Rl--Hd~~LY~~d~~~~~Wk---------~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQL-RL--HDDRLYQFDPNTARWK---------PP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeE-Ee--ecCceeeeccccceec---------CC----------CCcccchhhhhcccCCCceEe
Confidence 55557777777887743 22 6778888887654321 00 011234566666666777666
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe---cCCCe------EEEecCC
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRK------LFNFEGH 493 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd---~~g~~------~~~~~~h 493 (1128)
.++. .|-|+.++..-. ..-..|.+...+++|.- .+.++....++.+|+ ..+.. ...+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 244555543211 12345777888899984 467777777889998 22221 1223333
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 527 (1128)
.....+|.++. ..|+++..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 33556666643 3688899999887666543
No 447
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.54 E-value=23 Score=40.31 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=74.2
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g 484 (1128)
-..+|..+.+.-.|.+. .|+.|| +..||..+++.+... ......+|..+.-+-.|+ +..|+.+| |.+.+..|
T Consensus 163 ~d~~V~aLv~D~~g~lW-vgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGRLW-VGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCcEE-EecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 35688889998888544 577777 678888887766531 122336777777777776 66677554 56666555
Q ss_pred CeEEEec--CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-cCC--CCeEEEEEEcCCCCeEEE
Q 001190 485 RKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAP--GHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 485 ~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~--~~~i~~~~~s~~g~~l~~ 555 (1128)
....... -..+.|..+.- +.. ..+..|+..|..+. ........... ..+ -..|.++....+|..-+.
T Consensus 235 ~~~sn~~~~lp~~~I~ll~q--D~q-G~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~ 306 (671)
T COG3292 235 WRASNWGPMLPSGNILLLVQ--DAQ-GELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVG 306 (671)
T ss_pred ccccccCCCCcchheeeeec--ccC-CCEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeee
Confidence 3222211 12233444332 222 25666666665432 22222221111 111 124566666677765443
No 448
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=9.5 Score=44.61 Aligned_cols=181 Identities=11% Similarity=0.093 Sum_probs=95.0
Q ss_pred eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec----ccccccCeeEEEEcCCCC
Q 001190 853 KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK----LKGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 853 ~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~----l~~h~~~V~~l~~s~d~~ 928 (1128)
.|+||++ +|..+..+.-..+.+..+.|+. + ..|.+...||++++|++.... +.. +......|..+.|..+|-
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce
Confidence 3788887 4555555443444888999996 4 456677899999999986322 221 122233455555555664
Q ss_pred EEEEEcCCCcEE-EEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEE--EEec--CeEEEEecCCccc-cccccc
Q 001190 929 ILVSSGADAQLC-VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML--VVHE--TQLAIYDASKMER-IRQWTP 1002 (1128)
Q Consensus 929 ~l~s~~~Dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~--~~~d--~~i~v~d~~~~~~-~~~~~~ 1002 (1128)
.+.+. +|.+. +-+...... ......+... ....+.+.-+++.... ..-+ -...++....+.. ...+..
T Consensus 141 avlt~--~g~v~~i~~~~~~~~---~~~~diP~~~-~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPKL---RKMPDIPYNE-LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSW 214 (829)
T ss_pred EEEec--CCcEEEEcCCCcchh---hhCCCCCCcc-CCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCC
Confidence 44443 34333 333322111 0111101111 1112222222221111 1111 1112222222211 111111
Q ss_pred CCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 1003 QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1003 ~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
. .+.+..++.||+.++|+.=...|.|.+-+++..+..+.+.
T Consensus 215 ~---~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 215 P---NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred C---CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1 4678899999999999998899999999988888777776
No 449
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.18 E-value=17 Score=38.05 Aligned_cols=204 Identities=13% Similarity=0.103 Sum_probs=117.3
Q ss_pred ceeEEEEecCCCeEEEEEecCCCeEEEEecC-----CC---eEEEecC-----CCCCeEEEeccCCCC----------cc
Q 001190 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-----GR---KLFNFEG-----HEAPVYSICPHHKEN----------IQ 509 (1128)
Q Consensus 453 ~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~-----g~---~~~~~~~-----h~~~v~~~~~~~~~~----------~~ 509 (1128)
.-+.|+|+|.+. +-++...-+...+||.. +. .+..+.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 467899999887 67777778899999933 22 2333332 123456666643211 12
Q ss_pred EEEEEeccCcEEEEecCCCCc-----eeeecCC--CCeEEEEEEc--CCCCeEEEeeeccCCCceEEEEeCCCCceee--
Q 001190 510 FIFSTAIDGKIKAWLYDTMGS-----RVDYDAP--GHWCTTMLYS--ADGSRLFSCGTSKDGDSFLVEWNESEGTIKR-- 578 (1128)
Q Consensus 510 ~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~--~~~i~~~~~s--~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~-- 578 (1128)
.++.+++||+|.-|....... ...+... ..-...+++- ..+.+|..+-. ..++|.++|-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 367789999999997433222 2223211 2233445554 34667766654 47889999865333211
Q ss_pred Eecccc---C-CceeEEEE-----------eCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC----
Q 001190 579 TYAGFR---K-KSNGVVQF-----------DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---- 639 (1128)
Q Consensus 579 ~~~~~~---~-~~v~~~~~-----------~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---- 639 (1128)
.|.... + .+.....+ .++...=+.|-.-|.|-+||. .|+.++.+...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 111100 0 00111111 111111222334478999997 677788776666666667888866
Q ss_pred --CCCEEEEEEcCCcEEEEEcccCc
Q 001190 640 --EGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 640 --~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
.+.+|+---.||+|..+|..++.
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCc
Confidence 46677776779999999998874
No 450
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.14 E-value=15 Score=37.48 Aligned_cols=237 Identities=14% Similarity=0.072 Sum_probs=142.1
Q ss_pred CCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee
Q 001190 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 908 (1128)
....-..++-++||..-.++. .+.|--.|-.+|+....--+....-..+...| |+..-++-+.. .|.-.|-++.+..
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceE
Confidence 345566788899998888887 67788889999988766656566667788888 55544443322 4444454444321
Q ss_pred -ec--ccccccCeeEEEEcCCCCEEEEEcCC---------CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCC
Q 001190 909 -SK--LKGHQKRITGLAFSTSLNILVSSGAD---------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 909 -~~--l~~h~~~V~~l~~s~d~~~l~s~~~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
.. .+.-........|.++|.+.+++... +.|++|+.-.| .....|+..|||.
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG----------------~gpyGi~atpdGs 201 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG----------------GGPYGICATPDGS 201 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC----------------CCCcceEECCCCc
Confidence 11 12223456778899999988887532 34555554432 4567789999998
Q ss_pred EEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcc
Q 001190 977 RMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSV 1055 (1128)
Q Consensus 977 ~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1055 (1128)
.-+++ .++.|...|..++.. ..+.........-..+.-+|.|+.-++....+.+..||..+..- .......
T Consensus 202 vwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW-~eypLPg------ 273 (353)
T COG4257 202 VWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSW-IEYPLPG------ 273 (353)
T ss_pred EEEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccc-eeeeCCC------
Confidence 77775 467777777766632 22222222133445555667788888877788888888776542 2222111
Q ss_pred cCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCCC
Q 001190 1056 LNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGK 1097 (1128)
Q Consensus 1056 ~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~~ 1097 (1128)
..-...++.... .+...++--..|.|.-+|..+....
T Consensus 274 ----s~arpys~rVD~-~grVW~sea~agai~rfdpeta~ft 310 (353)
T COG4257 274 ----SKARPYSMRVDR-HGRVWLSEADAGAIGRFDPETARFT 310 (353)
T ss_pred ----CCCCcceeeecc-CCcEEeeccccCceeecCcccceEE
Confidence 111112222222 2444454555566776777666543
No 451
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.14 E-value=24 Score=39.70 Aligned_cols=202 Identities=13% Similarity=0.022 Sum_probs=110.5
Q ss_pred eccCCCeEEEEeCCeEEEEECCCceEEEEeeCCC--CCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-
Q 001190 839 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ- 915 (1128)
Q Consensus 839 ~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~- 915 (1128)
..-||+.++...+|.|.-.|..+++.+.....-. ..+..-.+.. +|+ +..++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3346666666568888888888888665433221 2333333333 565 6678889989999988898887776554
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCC
Q 001190 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASK 993 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~ 993 (1128)
-.+..-.+..++. +..++.|+.+.-.|..+|+.......... .. ..+..-....++..++... ++.+.-.++.+
T Consensus 143 ~~~~~~~v~~~~~-v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~--~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 143 PYYASPPVVGDGT-VYVGTDDGHLYALNADTGTLKWTYETPAP-LS--LSIYGSPAIASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred eEEecCcEEcCcE-EEEecCCCeEEEEEccCCcEEEEEecCCc-cc--cccccCceeecceEEEecCCCcceEEEEEccC
Confidence 1222222333433 33333678888888887776544333211 00 0111111133344444333 44677777777
Q ss_pred cccccccccCCCC-CCCe------EEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 994 MERIRQWTPQDAL-SAPI------SCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 994 ~~~~~~~~~~~~h-~~~v------~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
|...........- ...+ ..-..--++. ++.++.++.+...|..+|+.+.....
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGG-VYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCc-EEEEecCCeEEEEEcCCCceEEEEec
Confidence 7665553211100 1111 1111111222 35667788899999999999888874
No 452
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.13 E-value=5.9 Score=49.39 Aligned_cols=150 Identities=11% Similarity=0.178 Sum_probs=97.5
Q ss_pred eCCCcEEEEecccceeeecccccccCeeEEEE--------cCCCCEEEEEcCCCcEEEEECCCCcccceeEE---eecCC
Q 001190 892 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF--------STSLNILVSSGADAQLCVWSIDTWEKRKSVTI---HIPAG 960 (1128)
Q Consensus 892 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--------s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~---~~~~~ 960 (1128)
+-|+.+.+|+.+++.....+.+-+..|..|.. .|.=++++..+.--.|.++-+.-.+....... ...-.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45889999999998878888887777777754 33445566566666788776644332211111 00111
Q ss_pred CCCCCccEEEEcCCCCEEEEEecCeEE--EEecCCc---c-c-------------ccc-cccCCCCCCCeEEEEEeeCCC
Q 001190 961 KTPTGDTRVQFNADQVRMLVVHETQLA--IYDASKM---E-R-------------IRQ-WTPQDALSAPISCAVYSCNSQ 1020 (1128)
Q Consensus 961 ~~~~~v~~v~~s~d~~~l~~~~d~~i~--v~d~~~~---~-~-------------~~~-~~~~~~h~~~v~~l~~s~dg~ 1020 (1128)
..+..+.++....+|+.+++|.||.++ +|...++ + + +.. +.....+..+|..++....-.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 223678888989999999999888554 2332221 1 0 001 111113467999999988888
Q ss_pred EEEEEecCCcEEEEecCC-Cce
Q 001190 1021 LVFATFCDGNIGVFDADT-LRL 1041 (1128)
Q Consensus 1021 ~l~t~~~dg~i~vwd~~~-~~~ 1041 (1128)
.+.+-++.|.|.+||+.. |..
T Consensus 256 IlY~lsek~~v~~Y~i~~~G~~ 277 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGNGLG 277 (1311)
T ss_pred eeeeeccCceEEEEEccCCCcc
Confidence 999999999999999987 443
No 453
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.09 E-value=0.047 Score=59.09 Aligned_cols=244 Identities=14% Similarity=0.111 Sum_probs=138.7
Q ss_pred EEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeE
Q 001190 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1128)
Q Consensus 767 i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1128)
.....+.+.+..++.++.+..+..||-.. +.+. ....+.....+++..+|..+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~ag-----------------------q~~l----e~n~tg~aldm~wDkegdvl 89 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAG-----------------------QVIL----ELNPTGKALDMAWDKEGDVL 89 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhc-----------------------ceec----ccCCchhHhhhhhccccchh
Confidence 34456777777788888888888776321 1110 11245556678888888777
Q ss_pred EEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEc
Q 001190 847 MSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 924 (1128)
Q Consensus 847 a~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 924 (1128)
+... .+.+.+||+.+...-..-.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++.
T Consensus 90 avlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 6554 68899999975432111111122222378999 88899999999999999988877666655599999999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEE---EEcCCCCEEEEEecCeEEEE--ecC--Ccccc
Q 001190 925 TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV---QFNADQVRMLVVHETQLAIY--DAS--KMERI 997 (1128)
Q Consensus 925 ~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v---~~s~d~~~l~~~~d~~i~v~--d~~--~~~~~ 997 (1128)
+.+ +.+.++.|..+.+-...+... ........... .....+ .|..-|..+...-.+.+.+. .+. .+..-
T Consensus 169 lEd-~vil~dcd~~L~v~~qegeta-~ltevggepdn--m~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pva 244 (615)
T KOG2247|consen 169 LED-YVILCDCDNTLSVTTQEGETA-SLTEVGGEPDN--MDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVA 244 (615)
T ss_pred ccc-eeeecCcHHHHHHhhhcccee-eeeeccCccch--hhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccc
Confidence 876 455566666554433222110 00001000000 000111 12233334433222222111 111 11111
Q ss_pred cccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 998 RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 998 ~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
..++.. .+.+.|+.|--||. |.-+..-|.|.+-.+.++++...+.
T Consensus 245 l~fq~~---~gni~cyrwylDg~-i~igf~ag~iV~iS~h~aeLgaeff 289 (615)
T KOG2247|consen 245 LQFQEK---YGNIHCYRWYLDGY-ILIGFDAGYIVSISAHNAELGAEFF 289 (615)
T ss_pred eEeeec---CCceeEEEEecccc-ccccccceeEEEEeccchHHHHHHH
Confidence 123322 67788888888886 5567777788777787777655443
No 454
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=91.97 E-value=21 Score=38.65 Aligned_cols=209 Identities=11% Similarity=-0.009 Sum_probs=102.3
Q ss_pred CCCCeeEEEeccCCCeEEEEeCCe--EEEEECCCceEE---------------EEeeCCCCCeeEEEEcCCCCCEEEEEe
Q 001190 830 LEEAVPCIALSKNDSYVMSATGGK--ISLFNMMTFKVM---------------TTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~--i~vwd~~~~~~~---------------~~~~~~~~~v~~l~~s~~d~~~lasg~ 892 (1128)
+...|+++...+..+.|++-+|.. ++++++...... ...-.+.......++.......++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 567899999999999888888766 999998543320 111133333444444432223344455
Q ss_pred CCCcEEEEecccc----eeeecc---c-ccccCeeEEEEcCC--CCEEEEEcCCCcEEEEECCC--CcccceeEEeecCC
Q 001190 893 EDSTIHIYNVRVD----EVKSKL---K-GHQKRITGLAFSTS--LNILVSSGADAQLCVWSIDT--WEKRKSVTIHIPAG 960 (1128)
Q Consensus 893 ~dg~v~iwd~~~~----~~~~~l---~-~h~~~V~~l~~s~d--~~~l~s~~~Dg~i~iwd~~~--~~~~~~~~~~~~~~ 960 (1128)
...+|.++..... ...+.+ . .-..++..+..+++ ...+..|+..+...++++.. ..... ........
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d-~sl~~~~~ 199 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKED-LSLPFLSE 199 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccc-cccccccc
Confidence 5667777644322 111110 0 01123444443433 34566666542345555533 11000 00000000
Q ss_pred CCCCCccEEEEcCCCCEEEEEecCeEEEEecCCc-ccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCC
Q 001190 961 KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1039 (1128)
Q Consensus 961 ~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~ 1039 (1128)
........+..-+++.+|++-+ ....+.|.. | +..+.....- .....++++. ..||+.-. +..|.|+++.++
T Consensus 200 ~~~~~p~~i~~l~~~e~Llc~~-~~~v~Vn~~-G~~~~r~~~l~w--~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 200 ETSLKPISVVQVPRDEFLLCYD-EFGVFVNLY-GKRRSRNPILHW--EFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred ccccCceEEEEECCCeEEEEEC-cEEEEEeCC-CCccccceEEEc--CCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 0000233344444555555443 333344433 3 2222111111 4455677776 45666654 566999999999
Q ss_pred ceEEEeC
Q 001190 1040 RLRCYIA 1046 (1128)
Q Consensus 1040 ~~~~~~~ 1046 (1128)
+.+..+.
T Consensus 273 ~l~q~i~ 279 (302)
T smart00036 273 ELLQELA 279 (302)
T ss_pred ceEEEEe
Confidence 9888776
No 455
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.85 E-value=4.3 Score=45.50 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=55.9
Q ss_pred CcEEEEEEeCCCCcEEEEee-----------ccC-eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001190 345 STVISMDFHPSHQTLLLVGS-----------SNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs-----------~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1128)
....+|+|.++|+ ++++-. ..+ .|.+++-.++.-... ...++...-.....+
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---------------~~~vfa~~l~~p~Gi 77 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---------------KSNVFAEELSMVTGL 77 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---------------eeEEeecCCCCccce
Confidence 4578899999999 544421 223 677776543321111 111233333456889
Q ss_pred EEccCCCEEEEEeCCCeEEEEEccCCC----cceec-eeecc----cccceeEEEEecCCCeEEEEEe
Q 001190 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN----DLRQH-SQIDA----HVGAVNDLAFAYPNKLLCVVTC 471 (1128)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~----~~~~~-~~~~~----h~~~v~~l~fs~d~~~~~l~s~ 471 (1128)
++.++| .++ +......++.|.+... ..+.+ ..+.. +......++|.|||.. ++..|
T Consensus 78 ~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Yv~~G 142 (367)
T TIGR02604 78 AVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-YFNHG 142 (367)
T ss_pred eEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-EEecc
Confidence 999999 444 4444333333543211 11111 11222 2345788999999983 34334
No 456
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.71 E-value=3.9 Score=47.52 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=31.1
Q ss_pred CCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCCCcccCCCCC
Q 001190 1058 GSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVD 1105 (1128)
Q Consensus 1058 ~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~~w~~~~p~~ 1105 (1128)
..+...+.++.+.+.++.+++++=.-..|...|..+++-+|...++..
T Consensus 267 ~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 267 GRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp TSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT
T ss_pred CCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCC
Confidence 345566889999996555455444444899999999999999998763
No 457
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.68 E-value=6.9 Score=35.40 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=72.5
Q ss_pred EEcCCCCEEEEEcCCCcEEEEECCCCcccce---eEEeecCCCCCCCccEEEEcC-----CCCEEEEEecCeEEEEecCC
Q 001190 922 AFSTSLNILVSSGADAQLCVWSIDTWEKRKS---VTIHIPAGKTPTGDTRVQFNA-----DQVRMLVVHETQLAIYDASK 993 (1128)
Q Consensus 922 ~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~v~~v~~s~-----d~~~l~~~~d~~i~v~d~~~ 993 (1128)
.|.....-|+.++.-|.|.|.+......... ..+..... ...+++++--+ +...|++++...+..||+.+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 3444445677777778888887664322111 00000000 14455554433 45688889999999999998
Q ss_pred cccccccccCCCCCCCeEEEEEee----CCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 994 MERIRQWTPQDALSAPISCAVYSC----NSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 994 ~~~~~~~~~~~~h~~~v~~l~~s~----dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
...+..... ...|.++.+-. +..++++| .+..|.=||.+-.+...+..
T Consensus 83 N~d~Fyke~----~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 83 NSDLFYKEV----PDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred CchhhhhhC----ccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEec
Confidence 777665555 46677777643 34455555 47889989987777665543
No 458
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.59 E-value=0.41 Score=56.01 Aligned_cols=126 Identities=16% Similarity=0.269 Sum_probs=79.9
Q ss_pred CCCcEEEEEEe----CCCCcEEEEeeccCeEEEEEccC--CceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 343 QGSTVISMDFH----PSHQTLLLVGSSNGEITLWELAM--RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 343 h~~~V~~v~fs----pdg~~lla~gs~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
..++|-.++|- |.|+ . .-|...||+++- |+......++ ....-...+.-+.|.|
T Consensus 131 f~G~v~dl~fah~~~pk~~-~-----~vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR-R-----LVGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHH-H-----HhhhhheeehHhhccccccceEEe--------------ecCcCCCCcceeeecc
Confidence 45667777763 4444 1 225778898753 4433221111 1122233344555554
Q ss_pred ---CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEE-----------ecCCCeEEEEEecCCCeEEEEe-
Q 001190 417 ---DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-----------AYPNKLLCVVTCGDDKLIKVWE- 481 (1128)
Q Consensus 417 ---dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~f-----------s~d~~~~~l~s~s~d~~i~vWd- 481 (1128)
+..++..+-.++.|++..+++... . .+.+|...+.+++| ||||. .++.++.||.++.|.
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 677888888888988887776432 1 35578888877664 89999 899999999999998
Q ss_pred -cCCC----eEEEecCCC
Q 001190 482 -LSGR----KLFNFEGHE 494 (1128)
Q Consensus 482 -~~g~----~~~~~~~h~ 494 (1128)
.+|+ +++.++.|+
T Consensus 265 yi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeccccHhhhhccCCCC
Confidence 6665 445666776
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.59 E-value=6.3 Score=39.06 Aligned_cols=154 Identities=12% Similarity=0.134 Sum_probs=83.1
Q ss_pred CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe----cC---eEEEEe---cC--Ccc
Q 001190 928 NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ET---QLAIYD---AS--KME 995 (1128)
Q Consensus 928 ~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~---~i~v~d---~~--~~~ 995 (1128)
+.|+.+...+.|.+|++...++.....+... +.+..+.++.-|.++++-. .. .+|+|- .. ...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-----~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-----GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-----hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 3444445567899999995443333322221 6788999999999999953 22 566652 11 111
Q ss_pred cccc-cccCC------------------CCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCce-EEEeCCCCCCCCcc
Q 001190 996 RIRQ-WTPQD------------------ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL-RCYIAPSTYLSPSV 1055 (1128)
Q Consensus 996 ~~~~-~~~~~------------------~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~ 1055 (1128)
.++. +.++. ....++.+++-.|-..-|++|+ ++.+.+|.+..... ...+.-.-+. ...
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe-~~l 181 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFE-RSL 181 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEech-hhh
Confidence 1110 11100 0145667777777433355565 67899998876544 1111100111 112
Q ss_pred cCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1056 LNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1056 ~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
+.+.....+..+++.. ++++ ..++-.+++.++.
T Consensus 182 ~~~~~~~~p~~v~ic~---~yiA-~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 182 IDHIDNFKPTQVAICE---GYIA-VMSDLEVLVLKLE 214 (215)
T ss_pred hheecCceEEEEEEEe---eEEE-EecCCEEEEEEEe
Confidence 2334444567777764 4454 4456777777653
No 460
>PHA02790 Kelch-like protein; Provisional
Probab=91.44 E-value=7.1 Score=45.64 Aligned_cols=188 Identities=9% Similarity=0.033 Sum_probs=93.3
Q ss_pred CCCEEEEEeCCC-----cEEEEeccccee--eecccccccCeeEEEEcCCCCEEEEEcCC--CcEEEEECCCCcccceeE
Q 001190 884 DNNIIAIGTEDS-----TIHIYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGAD--AQLCVWSIDTWEKRKSVT 954 (1128)
Q Consensus 884 d~~~lasg~~dg-----~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~D--g~i~iwd~~~~~~~~~~~ 954 (1128)
++.++++|+.++ ++..||..+++- +..+.........+ .-+++..+.||.+ ..+..||..+++- ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W---~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAW---VN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeE---EE
Confidence 566777777543 466788776542 22222211122222 2467777778764 3577788665421 11
Q ss_pred EeecCCCCCCCccEEEEcCCCCEEEEEe-c---CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCc
Q 001190 955 IHIPAGKTPTGDTRVQFNADQVRMLVVH-E---TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN 1030 (1128)
Q Consensus 955 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d---~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~ 1030 (1128)
.. .-.. ......+..-+|+..++|+ + ..+..||..+..-...-.... ..-...+..-+|++.+.| |.
T Consensus 346 ~~--~l~~-~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~---~r~~~~~~~~~~~IYv~G---G~ 416 (480)
T PHA02790 346 MP--SLLK-PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY---PHYKSCALVFGRRLFLVG---RN 416 (480)
T ss_pred CC--CCCC-CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC---ccccceEEEECCEEEEEC---Cc
Confidence 11 1111 1111122233566666643 2 457788877654332211111 111112234567766666 45
Q ss_pred EEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC-----CcEEEEcCCCCCCCccc
Q 001190 1031 IGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGV 1100 (1128)
Q Consensus 1031 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-----g~i~iWd~~~~~~~w~~ 1100 (1128)
+.+||.++++-.. +.+ ++.. +.+. +++.. ++.+++.||.+ .++..+|+.+++ |..
T Consensus 417 ~e~ydp~~~~W~~-~~~---m~~~---r~~~----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~--W~~ 476 (480)
T PHA02790 417 AEFYCESSNTWTL-IDD---PIYP---RDNP----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS--WNI 476 (480)
T ss_pred eEEecCCCCcEeE-cCC---CCCC---cccc----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe--EEe
Confidence 7889988765432 221 1111 1111 12222 56788888865 357888888765 753
No 461
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.36 E-value=0.61 Score=32.45 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=26.6
Q ss_pred CcEEEEEEeCCCC--cEEEEeeccCeEEEEEccCC
Q 001190 345 STVISMDFHPSHQ--TLLLVGSSNGEITLWELAMR 377 (1128)
Q Consensus 345 ~~V~~v~fspdg~--~lla~gs~d~~i~iwd~~~~ 377 (1128)
++|.++.|||+.. .||+..-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998543 47888778899999999853
No 462
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.06 E-value=46 Score=40.88 Aligned_cols=103 Identities=14% Similarity=0.216 Sum_probs=60.9
Q ss_pred EEeccCCCeEEEEeCCeEEEEECCCceEEEEee--CCCCCeeEEEEcCCCCCEEEEEeCCCcEEE--Eecccceeeeccc
Q 001190 837 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHI--YNVRVDEVKSKLK 912 (1128)
Q Consensus 837 ~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~l~~s~~d~~~lasg~~dg~v~i--wd~~~~~~~~~l~ 912 (1128)
.|+.|-+.++.+|-+..+++||+...++++... .-...|+.+.+ .+..+++|..--.|.+ |+-...+++ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 455577778888888999999998776655433 23556777777 4456777765555554 444444433 332
Q ss_pred ccc--cCeeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001190 913 GHQ--KRITGLAFSTSLNILVSSGADAQLCVWSI 944 (1128)
Q Consensus 913 ~h~--~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~ 944 (1128)
... ..|+++.+-.. ..+|.+..=|.+.+-.+
T Consensus 1015 dD~~pR~Vt~~~~lD~-~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELLDY-DTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CCCccceeeEEEEecC-CceeeccccCcEEEEEC
Confidence 221 23566655533 45565555555555444
No 463
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.99 E-value=20 Score=36.64 Aligned_cols=196 Identities=12% Similarity=0.103 Sum_probs=130.1
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCccccee
Q 001190 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV 953 (1128)
Q Consensus 874 ~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~ 953 (1128)
.-..++-+| ||..-.++...+.|--.|-.+|+....--+....-..+..-|||...++-+.. -|.=.|-++.+ ..
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e---vt 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE---VT 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc---eE
Confidence 345677778 88888888888888888888887766555555556678888998877764433 34444555543 22
Q ss_pred EEeecCCCCCCCccEEEEcCCCCEEEEEecC----------eEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEE
Q 001190 954 TIHIPAGKTPTGDTRVQFNADQVRMLVVHET----------QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 1023 (1128)
Q Consensus 954 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~----------~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1023 (1128)
.......+.........|.++|.+-+++..| .|++|+.. . ...-..|+..|||...+
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------q--G~gpyGi~atpdGsvwy 204 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------Q--GGGPYGICATPDGSVWY 204 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------C--CCCCcceEECCCCcEEE
Confidence 3333444555788899999999998886432 34555543 2 45557888999999888
Q ss_pred EEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCCCccc
Q 001190 1024 ATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGV 1100 (1128)
Q Consensus 1024 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~~w~~ 1100 (1128)
+.-.++.|..-|..++....... ...+. . ....+--+| -+..-++....+.+.-+|.+... |.+
T Consensus 205 aslagnaiaridp~~~~aev~p~-P~~~~--------~-gsRriwsdp-ig~~wittwg~g~l~rfdPs~~s--W~e 268 (353)
T COG4257 205 ASLAGNAIARIDPFAGHAEVVPQ-PNALK--------A-GSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTS--WIE 268 (353)
T ss_pred EeccccceEEcccccCCcceecC-CCccc--------c-cccccccCc-cCcEEEeccCCceeeEeCccccc--cee
Confidence 87788888888888774332222 11111 1 112333344 47788888888899999888866 876
No 464
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.42 E-value=0.86 Score=31.74 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=26.8
Q ss_pred cceEEEEEccCC---CEEEEEeCCCeEEEEEccCC
Q 001190 407 ISVSRVAWSPDG---NYVGVAFTKHLIQLYSYAGS 438 (1128)
Q Consensus 407 ~~V~~l~~spdg---~~las~~~d~~i~vwd~~~~ 438 (1128)
+.|.++.|||+. .+|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 478999999854 58888888899999999863
No 465
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.38 E-value=32 Score=37.87 Aligned_cols=154 Identities=12% Similarity=0.180 Sum_probs=91.6
Q ss_pred eeEEEeccCCCeEEEEeCCeEEEEECCCc--eEEEEe-eCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee--
Q 001190 834 VPCIALSKNDSYVMSATGGKISLFNMMTF--KVMTTF-MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-- 908 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~dg~i~vwd~~~~--~~~~~~-~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-- 908 (1128)
-+.+-|...++.++....|.+.-|.+... .....+ ....++|.++.||+ |++.||+--.|.+|.+++....+..
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhH
Confidence 34455655555555444444444544321 112222 23466899999999 9999999999999999998433222
Q ss_pred --ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe---c
Q 001190 909 --SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---E 983 (1128)
Q Consensus 909 --~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d 983 (1128)
.+.+..+..|.+..|+.. .-+|.....| +-+|.+...+.. +.....+. ..+....|.++...++.++ .
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrs----lRlVks~~-~nvnWy~yc~et~v~LL~t~~~~ 176 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRS----LRLVKSHN-LNVNWYMYCPETAVILLSTTVLE 176 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhh----hhhhhhcc-cCccEEEEccccceEeeeccccc
Confidence 233344556889999876 5666666555 777776553211 11111111 6788888999887665542 3
Q ss_pred CeEEEEecCCcc
Q 001190 984 TQLAIYDASKME 995 (1128)
Q Consensus 984 ~~i~v~d~~~~~ 995 (1128)
+.+.=+.++++.
T Consensus 177 n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 177 NVLNPFHFRAGT 188 (657)
T ss_pred cccccEEEeece
Confidence 444444444443
No 466
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.18 E-value=33 Score=37.70 Aligned_cols=164 Identities=12% Similarity=0.141 Sum_probs=92.7
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCc------EEEEeccc--c--eee-----eccccccc--------CeeEEEEcCCCC
Q 001190 872 PPASTFLAFHPQDNNIIAIGTEDST------IHIYNVRV--D--EVK-----SKLKGHQK--------RITGLAFSTSLN 928 (1128)
Q Consensus 872 ~~~v~~l~~s~~d~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~ 928 (1128)
-+.+..+.+.+.++. +++.+.+|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 456788888863444 445566666 66555543 1 000 11111111 233678888898
Q ss_pred EEEEEcCC------CcEEEEECCCCcccceeEEeec---------CCCCCCCccEEEEcCCCCEEEEE------ecC--e
Q 001190 929 ILVSSGAD------AQLCVWSIDTWEKRKSVTIHIP---------AGKTPTGDTRVQFNADQVRMLVV------HET--Q 985 (1128)
Q Consensus 929 ~l~s~~~D------g~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~v~~v~~s~d~~~l~~~------~d~--~ 985 (1128)
++++.-.+ ..|..++.. |+....+.+... ........-.++++|||+.|++. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 788888877 665544432221 11222678899999999955553 122 1
Q ss_pred -------EE--EEecCC-cccccccccCCC------CCCCeEEEEEeeCCCEEEEEe-----cCCcEEEEecC
Q 001190 986 -------LA--IYDASK-MERIRQWTPQDA------LSAPISCAVYSCNSQLVFATF-----CDGNIGVFDAD 1037 (1128)
Q Consensus 986 -------i~--v~d~~~-~~~~~~~~~~~~------h~~~v~~l~~s~dg~~l~t~~-----~dg~i~vwd~~ 1037 (1128)
++ .||..+ +.....+..... ....|..+.+-+|+++|+.== ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 34 455544 323332221111 257889999999999777421 23456666544
No 467
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.99 E-value=8.8 Score=38.05 Aligned_cols=49 Identities=12% Similarity=0.388 Sum_probs=36.2
Q ss_pred CEEEEEECCCcEEEEECC--CCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc
Q 001190 598 NHFLAVGEDSQIKFWDMD--NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1128)
Q Consensus 598 ~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 649 (1128)
+.|+.+...+.|.+|++. ..+....+.. .+.|..+.++..|.+|++--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEe
Confidence 456555677889999988 3445555543 347899999999999998754
No 468
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=89.94 E-value=47 Score=39.20 Aligned_cols=391 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred EEEeCCCCcEEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccCC-------CcceEEEEEcc-----
Q 001190 350 MDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDV-------PISVSRVAWSP----- 416 (1128)
Q Consensus 350 v~fspdg~~lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp----- 416 (1128)
++..|.|| .++.+..++.+.|+.++. ...... ...| ...|..++|-.
T Consensus 49 l~vDP~~R-~i~v~a~e~~~~v~~l~~~~~~~~~-------------------~~~~~~~pi~s~~~i~~~~FL~~~~~~ 108 (504)
T PF10433_consen 49 LAVDPSGR-CIAVSAYEGNFLVYPLNRSLDSDIA-------------------FSPHINSPIKSEGNILDMCFLHPSVGY 108 (504)
T ss_dssp EEE-TTSS-EEEEEEBTTEEEEEE-SS----T-T-------------------T---EEEE--S-SEEEEEEEES---S-
T ss_pred EEECCcCC-EEEEEecCCeEEEEEeccccccccc-------------------ccccccccccCCceEEEEEEEecccCC
Q ss_pred CCCEEEEEeCCCe------EEEEEccCCCcceeceeecc------cccceeEEEEecCCCeEEEEEecCCCeEEEEe--c
Q 001190 417 DGNYVGVAFTKHL------IQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (1128)
Q Consensus 417 dg~~las~~~d~~------i~vwd~~~~~~~~~~~~~~~------h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~ 482 (1128)
+...+|.--.+.. ..-|+...+-.......-.. +..+..-+..-.... .++.++..-.+..=. .
T Consensus 109 ~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g--gllV~~~~~i~y~~~~~~ 186 (504)
T PF10433_consen 109 DNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG--GLLVGGENIIIYKNHLIG 186 (504)
T ss_dssp SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT---SEEEEESSEEEEEE----
T ss_pred CCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc--EEEEECCEEEEEeccccc
Q ss_pred CCCeEEEecCC-----CCCeEEEec-----cCCCCccEEEEEeccCcEEEEecCCCC--ceeeecCC-CCeEEEEEEcCC
Q 001190 483 SGRKLFNFEGH-----EAPVYSICP-----HHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAP-GHWCTTMLYSAD 549 (1128)
Q Consensus 483 ~g~~~~~~~~h-----~~~v~~~~~-----~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~-~~~i~~~~~s~~ 549 (1128)
.+.....-... ..-+.+.+. ....++..++.+..+|.+..-.+.... ......+. .....++++..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~ 266 (504)
T PF10433_consen 187 SGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKN 266 (504)
T ss_dssp --TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEEST
T ss_pred ccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcC
Q ss_pred C--CeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEe----CCCC------EEEEEE---CCCcEEEEEC
Q 001190 550 G--SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD----TTQN------HFLAVG---EDSQIKFWDM 614 (1128)
Q Consensus 550 g--~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~------~l~~~s---~dg~i~iwd~ 614 (1128)
| -.++.+.. +|+.+.-|....-+.+..+..-. ++..+++. .... .+++++ .+|.+++..-
T Consensus 267 g~d~lf~gs~~---gds~l~~~~~~~l~~~~~~~N~~--Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 267 GGDYLFVGSEF---GDSQLLQISLSNLEVLDSLPNWG--PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp T--EEEEEESS---S-EEEEEEESESEEEEEEE------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred CCEEEEEEEec---CCcEEEEEeCCCcEEEEeccCcC--CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Q ss_pred CCCee--eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc--cCccccccccCCccccccCcceeeeeecccc
Q 001190 615 DNVNI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA--IGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1128)
Q Consensus 615 ~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 690 (1128)
.-+-. ......-.+...++.+....+....+..+....-+++.+. .....+..+....+......+..-.+. +.
T Consensus 342 Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~ 419 (504)
T PF10433_consen 342 GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DG 419 (504)
T ss_dssp SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TT
T ss_pred cCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CC
Q ss_pred cccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEE
Q 001190 691 SAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRL 770 (1128)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 770 (1128)
.+ +
T Consensus 420 ~i-----------------------------------------------------------------------------v 422 (504)
T PF10433_consen 420 RI-----------------------------------------------------------------------------V 422 (504)
T ss_dssp EE-----------------------------------------------------------------------------E
T ss_pred eE-----------------------------------------------------------------------------E
Q ss_pred EEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe
Q 001190 771 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 850 (1128)
Q Consensus 771 ~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 850 (1128)
.+.+.+-.++..........|.. ..+..-..+...++..+++..
T Consensus 423 QVt~~~i~l~~~~~~~~~~~w~~------------------------------------~~~~~I~~a~~~~~~v~v~~~ 466 (504)
T PF10433_consen 423 QVTPKGIRLIDLEDGKLTQEWKP------------------------------------PAGSIIVAASINDPQVLVALS 466 (504)
T ss_dssp EEESSEEEEEESSSTSEEEEEE-------------------------------------TTS---SEEEESSSEEEEEE-
T ss_pred EEecCeEEEEECCCCeEEEEEeC------------------------------------CCCCeEEEEEECCCEEEEEEe
Q ss_pred CCeEEEEECCCceEEEEeeCC-----CCCeeEEEEcC
Q 001190 851 GGKISLFNMMTFKVMTTFMSP-----PPASTFLAFHP 882 (1128)
Q Consensus 851 dg~i~vwd~~~~~~~~~~~~~-----~~~v~~l~~s~ 882 (1128)
++.+..+.+............ ...|.|+...|
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 467 GGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
No 469
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.45 E-value=12 Score=34.04 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=71.1
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-----CCCEEEE
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-----DGNYVGV 423 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~las 423 (1128)
.-.|..... -|++++.-|.|.|.+.......... ......+-.-...|++++-.| +...|+.
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~------------~~~~i~~LNin~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR------------QDSDISFLNINQEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCcccccccc------------ccCceeEEECCCceEEEEEEecCCCCCcCEEEE
Confidence 344555555 5688888999999998755432210 000111333456788876554 3456666
Q ss_pred EeCCCeEEEEEccCCCcceeceeecccccceeEEEEec----CCCeEEEEEecCCCeEEEEecCCCeE
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY----PNKLLCVVTCGDDKLIKVWELSGRKL 487 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~----d~~~~~l~s~s~d~~i~vWd~~g~~~ 487 (1128)
|+. ..+..||+.....+. .+.-.+.|+++.+-. +.. +++.|+ ...|.-+|.+|..+
T Consensus 70 Gt~-t~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~--l~ivGG-ncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 70 GTQ-TSLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSP--LVIVGG-NCSIQGFDYEGNEI 129 (136)
T ss_pred ecc-ceEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCc--EEEECc-eEEEEEeCCCCcEE
Confidence 655 469999999876654 334456788887732 233 455554 67888888666654
No 470
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.43 E-value=52 Score=38.95 Aligned_cols=58 Identities=14% Similarity=0.289 Sum_probs=38.8
Q ss_pred CCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEE
Q 001190 831 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 888 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~l 888 (1128)
...+...+|.-....++.+..+.+++|...+..-.....-....+.-+.|+|.....|
T Consensus 295 dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl 352 (1243)
T COG5290 295 DEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTL 352 (1243)
T ss_pred hhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEE
Confidence 3445666776666777777788999999877654444333455677889998433333
No 471
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=89.15 E-value=1 Score=41.66 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=46.7
Q ss_pred hHHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhh
Q 001190 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQL 130 (1128)
Q Consensus 71 ~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 130 (1128)
.++|.++-+.||||+..|...+|..|+++.-.-+.....+++++|+.+....+..+++..
T Consensus 28 ~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~ 87 (133)
T cd08044 28 QLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELA 87 (133)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHH
Confidence 399999999999999999999999999876555544567778888777666555544443
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.54 E-value=3.8 Score=50.93 Aligned_cols=169 Identities=14% Similarity=0.234 Sum_probs=97.8
Q ss_pred CCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceE
Q 001190 331 DDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1128)
Q Consensus 331 ~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1128)
.+.|..+...+.|...=+.+-+-|.=.+.-+ +.|+.+.+|+++++..... +.+-+..|.
T Consensus 65 ~~IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl 123 (1311)
T KOG1900|consen 65 VNIPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTIL 123 (1311)
T ss_pred ccCCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhhe
Confidence 3444455555555555555555555332444 4789999999998654432 334444555
Q ss_pred EEEE--------ccCCCEEEEEeCCCeEEEEEccCCCcceeceeec------ccccceeEEEEecCCCeEEEEEecCCCe
Q 001190 411 RVAW--------SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID------AHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1128)
Q Consensus 411 ~l~~--------spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~------~h~~~v~~l~fs~d~~~~~l~s~s~d~~ 476 (1128)
.|.. -|.=++++..+.--.|.++-+.-.+.......+. -..-.|+++....+|+ .++ +|.||
T Consensus 124 ~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg- 199 (1311)
T KOG1900|consen 124 KVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG- 199 (1311)
T ss_pred eeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC-
Confidence 5433 3333455555444556776554222111111122 2355788999888888 555 45566
Q ss_pred EEEEe-----cCC---C-e----------------EEEec-CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC
Q 001190 477 IKVWE-----LSG---R-K----------------LFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1128)
Q Consensus 477 i~vWd-----~~g---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 527 (1128)
.+|. .+| + + +..+. .+.++|..+.+.. ....+++-+..|+|.+|++..
T Consensus 200 -~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 200 -NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 4454 111 1 0 11223 5677999999854 447899999999999999865
No 473
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.39 E-value=0.25 Score=53.80 Aligned_cols=127 Identities=17% Similarity=0.270 Sum_probs=88.9
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.+....+.-+...-.++|.-+|..+++.+-..+.+.|||+.+..... + ..-..|.... +.|
T Consensus 65 gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq---L--------------E~gg~~s~sl--l~w 125 (615)
T KOG2247|consen 65 GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---L--------------ESGGTSSKSL--LAW 125 (615)
T ss_pred cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---H--------------hccCcchHHH--Hhh
Confidence 34444444555666777777887666667788999999997654211 0 0011233333 789
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCe
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK 486 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~ 486 (1128)
++.+..++.+...|.+.|++..+.+... ....|..++++++|.+++. .+.++.|..+.+-...|..
T Consensus 126 sKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~qeget 191 (615)
T KOG2247|consen 126 SKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTTQEGET 191 (615)
T ss_pred ccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhhhccce
Confidence 9999999999999999999988765443 3444999999999999985 7888888877666533433
No 474
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=88.36 E-value=82 Score=39.82 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=18.0
Q ss_pred CcccEEEEEEecCcceEEEeecc
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSN 785 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~d 785 (1128)
+...+.+++++|||...++-..+
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCc
Confidence 66778899999999977665444
No 475
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.31 E-value=1.7 Score=29.82 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=22.9
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeecc--CeEEEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSN--GEITLW 372 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d--~~i~iw 372 (1128)
.....-.+..|||||++++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455678999999999888887777 766666
No 476
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.30 E-value=3.1 Score=40.71 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=25.6
Q ss_pred cceEEEEEccCC------CEEEEEeCCCeEEEEEccC
Q 001190 407 ISVSRVAWSPDG------NYVGVAFTKHLIQLYSYAG 437 (1128)
Q Consensus 407 ~~V~~l~~spdg------~~las~~~d~~i~vwd~~~ 437 (1128)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 489999999943 4788889999999998664
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.23 E-value=21 Score=41.99 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=72.6
Q ss_pred CCccEEEEcCCCCEEEEE-ecC-----eEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 964 TGDTRVQFNADQVRMLVV-HET-----QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 964 ~~v~~v~~s~d~~~l~~~-~d~-----~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
+.-..+.|-|.|..+++- +|| .+.++.- +|-.-..+.........+..++|.-....++.+ ..+.|++|-..
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttk 324 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTK 324 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEcc
Confidence 334568999999999983 232 3444443 332222222111114556667776666655544 57789999987
Q ss_pred CCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCCCcccCCCCCCCc
Q 001190 1038 TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGI 1108 (1128)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~~w~~~~p~~~~~ 1108 (1128)
+-.-..+... ....+.-+.|+|...+.+...+.....+ =.++......+...|.|+|.
T Consensus 325 NyhWYLK~e~------------~ip~~s~vkwhpe~~nTl~f~d~~~I~~-V~f~~k~~~~~s~~p~d~g~ 382 (1243)
T COG5290 325 NYHWYLKVER------------QIPGISYVKWHPEEKNTLLFRDGERILR-VFFSEKKTHHGSEYPFDNGT 382 (1243)
T ss_pred ceEEEEEEee------------cCCCcceeeeccccCcEEEEecCCeEEE-EEeehhhhcCCcccCccCCc
Confidence 7655444331 1112245789998777666655443333 33444434455567777764
No 478
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.10 E-value=40 Score=38.48 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=61.3
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce--eeeccc-----ccccCeeEEEEcCCC------CEEEEEc-C--
Q 001190 872 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--VKSKLK-----GHQKRITGLAFSTSL------NILVSSG-A-- 935 (1128)
Q Consensus 872 ~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--~~~~l~-----~h~~~V~~l~~s~d~------~~l~s~~-~-- 935 (1128)
-.....|+|.| |+++|++--..|.|++++-.++. .+..+. .-.+....|+++|+- .+|.... .
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 34568899999 88887766557999999865542 221121 124668899999884 2333221 1
Q ss_pred -------CCcEEEEECCCC--cccc-eeEEeecCCCCCCCccEEEEcCCCCEEEEEec
Q 001190 936 -------DAQLCVWSIDTW--EKRK-SVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE 983 (1128)
Q Consensus 936 -------Dg~i~iwd~~~~--~~~~-~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d 983 (1128)
...|.-|.+... .... ...+..........-..|+|.|||.++++..|
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 223444554421 1111 11111111111134678899999987776443
No 479
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.48 E-value=22 Score=42.51 Aligned_cols=111 Identities=12% Similarity=0.246 Sum_probs=72.2
Q ss_pred CCeeEEEecc--CCCeEEEEe-CCeEEEEECCCc-----------e---------EEEEeeCCCCCeeEEEEc--CCCCC
Q 001190 832 EAVPCIALSK--NDSYVMSAT-GGKISLFNMMTF-----------K---------VMTTFMSPPPASTFLAFH--PQDNN 886 (1128)
Q Consensus 832 ~~v~~~~~s~--dg~~la~~~-dg~i~vwd~~~~-----------~---------~~~~~~~~~~~v~~l~~s--~~d~~ 886 (1128)
..|+.+.+.. +...|+.+. ||.|.+|.+++- + +...+. -...+..++++ . ..+
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~r 178 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSR 178 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cce
Confidence 3455555443 445666665 899999976311 0 111111 23467889998 6 788
Q ss_pred EEEEEeCCCcEEEEecccc--eeee-cccccccCeeEEEEcCCC-----C-EEEEEcCCCcEEEEEC
Q 001190 887 IIAIGTEDSTIHIYNVRVD--EVKS-KLKGHQKRITGLAFSTSL-----N-ILVSSGADAQLCVWSI 944 (1128)
Q Consensus 887 ~lasg~~dg~v~iwd~~~~--~~~~-~l~~h~~~V~~l~~s~d~-----~-~l~s~~~Dg~i~iwd~ 944 (1128)
+||+++....|.||-.... +... .-..|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999998888888866542 1111 111256678999997653 2 7888999999999888
No 480
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.47 E-value=59 Score=37.16 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=40.2
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
..-+..+.++|.|||+ +|++--..|.|++++-.++.......+ .......-.+....|+|+|+-
T Consensus 27 ~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 3456789999999998 767653369999998655432110000 000111136788999999984
No 481
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=87.20 E-value=4.4 Score=35.46 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=52.1
Q ss_pred CcchHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcCHHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHHHHhHH
Q 001190 2 SSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1128)
Q Consensus 2 ~~~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1128)
..+..|-+..|..|++..| +.+.+++|.||++- ..|.-+ |+.+..|.......... ...+...
T Consensus 32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYP--TvR~rL-----d~ii~~lg~~~~~~~~~-------~~~~~~I 94 (113)
T PF09862_consen 32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYP--TVRNRL-----DKIIEKLGYEEDEEEEE-------EDERKEI 94 (113)
T ss_pred hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcH--HHHHHH-----HHHHHHhCCCCCccccc-------chhHHHH
Confidence 3566778889999999999 99999999999994 222211 33333333311111111 1236778
Q ss_pred hHhhccCC--HHHHHHHHH
Q 001190 82 LEALDRQD--KAKAVDILV 98 (1128)
Q Consensus 82 ~ell~~~~--~~~a~~~l~ 98 (1128)
|+.|+.|+ .++|++.|+
T Consensus 95 L~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 95 LDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHcCCCCHHHHHHHhC
Confidence 89999988 677888764
No 482
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.71 E-value=54 Score=35.99 Aligned_cols=111 Identities=7% Similarity=-0.013 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCC-----cEEEEECCCCccc-ceeEEeecCCCCCCCccEEEEcCCCCEEEEEe------cCeEEEEecCC
Q 001190 926 SLNILVSSGADA-----QLCVWSIDTWEKR-KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH------ETQLAIYDASK 993 (1128)
Q Consensus 926 d~~~l~s~~~Dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~------d~~i~v~d~~~ 993 (1128)
++.+++.|+.++ .+..+|+.+.+-. ...... .......-..++. -+++..+.+. ...+..||..+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~--~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIG--NLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC--CCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 556777777643 4666777664421 011111 1111011112222 2455555543 23588888876
Q ss_pred cccccccccCCCCCCCeEEEEEeeCCCEEEEEecCC----cEEEEecCCCce
Q 001190 994 MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG----NIGVFDADTLRL 1041 (1128)
Q Consensus 994 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg----~i~vwd~~~~~~ 1041 (1128)
.+-...-.... .......+...++++.+.|+.++ .+.+||.++.+-
T Consensus 149 ~~W~~~~~~p~--~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 149 QEWFELPDFPG--EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCeeECCCCCC--CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 54322111110 11222333455777777777654 356888887653
No 483
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=86.71 E-value=0.9 Score=42.53 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=39.7
Q ss_pred HHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCc
Q 001190 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNF 124 (1128)
Q Consensus 72 ~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~ 124 (1128)
++|.|+-+.|++|+..+..++|..|+.+.-.-+.....+++++|..+....+.
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l 92 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHL 92 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHH
Confidence 99999999999999999999999999886555544456667777655444433
No 484
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.35 E-value=40 Score=37.01 Aligned_cols=173 Identities=18% Similarity=0.203 Sum_probs=93.6
Q ss_pred CcccEEEEEEecCcceEEEeeccce------eEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeE
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGV------QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~------i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 836 (1128)
.-+.+.++.+.+++..+++.+.+|. +...++..... ..+.........+-+.. |.... . ..-...+
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~----~--~~~D~Eg 89 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP----K--NGLDPEG 89 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC----c--CCCChhH
Confidence 4567788999977667777787776 55554443111 11111111111111111 11110 0 1225667
Q ss_pred EEeccCCCeEEEEe-C------CeEEEEECCCceEEEEee---------------CCCCCeeEEEEcCCCCCEEEEEeC-
Q 001190 837 IALSKNDSYVMSAT-G------GKISLFNMMTFKVMTTFM---------------SPPPASTFLAFHPQDNNIIAIGTE- 893 (1128)
Q Consensus 837 ~~~s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~---------------~~~~~v~~l~~s~~d~~~lasg~~- 893 (1128)
+++.++|.++++.. + ..|..++.. |+....+. ..+...-+|+++| +|+.|.++.+
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~ 167 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES 167 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence 88888888888876 5 568888876 66554441 1234578999999 8885555432
Q ss_pred ----CC--c-------EEEEecc--c-ceeee----cccc-----cccCeeEEEEcCCCCEEEEE-----cCCCcEEEEE
Q 001190 894 ----DS--T-------IHIYNVR--V-DEVKS----KLKG-----HQKRITGLAFSTSLNILVSS-----GADAQLCVWS 943 (1128)
Q Consensus 894 ----dg--~-------v~iwd~~--~-~~~~~----~l~~-----h~~~V~~l~~s~d~~~l~s~-----~~Dg~i~iwd 943 (1128)
|+ . ++|+... + ++... .+.. ....|..+.+-+++++|+-= +....++|+.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 22 1 4555443 3 22222 2221 34678888898998866641 1233455555
Q ss_pred CC
Q 001190 944 ID 945 (1128)
Q Consensus 944 ~~ 945 (1128)
+.
T Consensus 248 v~ 249 (326)
T PF13449_consen 248 VD 249 (326)
T ss_pred EE
Confidence 44
No 485
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.13 E-value=27 Score=44.41 Aligned_cols=233 Identities=9% Similarity=0.089 Sum_probs=110.9
Q ss_pred CCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCC-CeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee
Q 001190 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 907 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~-~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~ 907 (1128)
.......++|+|..+++|.+. .|.|++|-...-+.......... .+..+.+-. ..........+..+.+|.......
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~ 112 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV-GISRNLVLSDDDSLHLWSIKIKTG 112 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeee-cccccceeecccceeeecccccce
Confidence 345667899999999999998 89999997654443332221111 222222222 112223344556666665543221
Q ss_pred eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEE
Q 001190 908 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLA 987 (1128)
Q Consensus 908 ~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~ 987 (1128)
+. +...+++...-+--.+ .-+ ..+.+++||..--.... .......... .......++.-.......+-.-.
T Consensus 113 ~~----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~ 183 (993)
T KOG1983|consen 113 VF----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSD-LKYAGTESSN--FVPYESLSPTLSIEGLVIDLDTV 183 (993)
T ss_pred ee----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhcc-ceeccccccc--cceeeeeccceeeeccccccccc
Confidence 11 1122333222221123 334 78888888876432211 1111111100 00000001100000000111111
Q ss_pred EEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEE
Q 001190 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1067 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1128)
++.+..-. ..+ ..+..++.+..+..++..+. +...+.+-+|+............ .. .
T Consensus 184 ~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~------------~ 240 (993)
T KOG1983|consen 184 LISLPDAY--LGL---SLIEYESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYLP-----NG------------Q 240 (993)
T ss_pred eeeccccc--ccc---cccccccceeeeecCCCcce-eeeeeeeeehhcccccchhhccc-----cc------------c
Confidence 11111111 011 11256666666666665443 44567778887766554333331 11 1
Q ss_pred EEecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1068 AAHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1068 ~~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
.+.+ ++..++++..||.+.+||++.+..
T Consensus 241 ~~~~-~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 241 LESR-DGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cCcc-CCceEEEEEecCCEEeeecCCCce
Confidence 1134 688999999999999999999865
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.99 E-value=91 Score=38.98 Aligned_cols=238 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc-ccccCee
Q 001190 843 DSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-GHQKRIT 919 (1128)
Q Consensus 843 g~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~ 919 (1128)
+.+|++|. +-.=.-+....-..+....|..+.+..++.- +...+..+..++....-+.........+. .-..+|.
T Consensus 6 ~~Lla~g~i~~~~~~r~~~~~~~i~A~asGesg~~L~L~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~PI~ 83 (765)
T PF10214_consen 6 GSLLAIGEIQDVSDLRSGSRPVPILAFASGESGSVLRLSRL--DEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGSPIK 83 (765)
T ss_pred CccEEEEEeeecccCCCCCceeEEEEEecCCCCCeeEEEEe--cccccccccccccccccCCCCccccceeEcCCCCCee
Q ss_pred EEEEc------CCCCEEEEEcCCCcEEEEE----------CCCCcccceeEEeecCCCCC--CCccEEEEcC-CCCEEEE
Q 001190 920 GLAFS------TSLNILVSSGADAQLCVWS----------IDTWEKRKSVTIHIPAGKTP--TGDTRVQFNA-DQVRMLV 980 (1128)
Q Consensus 920 ~l~~s------~d~~~l~s~~~Dg~i~iwd----------~~~~~~~~~~~~~~~~~~~~--~~v~~v~~s~-d~~~l~~ 980 (1128)
.|.|+ .....++.+=....+.|+. -.....+...++.....+.. .+...|+|+| +...+|+
T Consensus 84 qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~Ai 163 (765)
T PF10214_consen 84 QIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAI 163 (765)
T ss_pred EEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEE
Q ss_pred Ee-cCeEEEEec--CCcccccccccCCCCCCCe------E----EEEEeeCCCEEEEEecCCcEEEEecCCCceEE-EeC
Q 001190 981 VH-ETQLAIYDA--SKMERIRQWTPQDALSAPI------S----CAVYSCNSQLVFATFCDGNIGVFDADTLRLRC-YIA 1046 (1128)
Q Consensus 981 ~~-d~~i~v~d~--~~~~~~~~~~~~~~h~~~v------~----~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~-~~~ 1046 (1128)
.+ .|...||++ ........+.....+.+.+ . .+.|.++-..|++.+ ...+.++|+++..... ...
T Consensus 164 VD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~ 242 (765)
T PF10214_consen 164 VDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNWQTEYLVT 242 (765)
T ss_pred EeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCCCccchhcc
Q ss_pred CCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1047 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
.....+++.+.-+|.+..+++.-.. .+|.+.++....
T Consensus 243 -----------~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~~~ 279 (765)
T PF10214_consen 243 -----------AKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKSSS 279 (765)
T ss_pred -----------CCChhheeeEEecCCccceEEEEec-CeEEEEEccCCC
No 487
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.95 E-value=2.5 Score=42.97 Aligned_cols=73 Identities=11% Similarity=0.159 Sum_probs=52.0
Q ss_pred EcCCCCEEEEEcCCCcEEEEECCCCccccee-EEe-ecCC------CCCCCccEEEEcCCCCEEEEEecCeEEEEecCCc
Q 001190 923 FSTSLNILVSSGADAQLCVWSIDTWEKRKSV-TIH-IPAG------KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 994 (1128)
Q Consensus 923 ~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~-~~~-~~~~------~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~ 994 (1128)
+..++++|+....+|.+++||+.+++..... .+. .... .....+..+.++.+|.-+++-++|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4557889999999999999999997754333 111 1110 2236778888888898888878888888887644
Q ss_pred c
Q 001190 995 E 995 (1128)
Q Consensus 995 ~ 995 (1128)
.
T Consensus 98 ~ 98 (219)
T PF07569_consen 98 C 98 (219)
T ss_pred e
Confidence 3
No 488
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.89 E-value=14 Score=40.97 Aligned_cols=150 Identities=14% Similarity=0.106 Sum_probs=88.8
Q ss_pred EEEcCCCCCEEE-EEeCCCcEEEEecccceeeecccccccCeeEEEEcCCC--------CEEEEEcCCCcEEEEECCC-C
Q 001190 878 LAFHPQDNNIIA-IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL--------NILVSSGADAQLCVWSIDT-W 947 (1128)
Q Consensus 878 l~~s~~d~~~la-sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~--------~~l~s~~~Dg~i~iwd~~~-~ 947 (1128)
+..+.++..+|. .|.....++-.|+..|+.+.++..|..- -|.|.|+. +.|+-.+ |..|.--|..- |
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccC
Confidence 334333555554 4556677888899999999999888665 57788754 3455444 44444334332 2
Q ss_pred cccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe
Q 001190 948 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
..+....... -......++..-... -+++++ ..|.|++||--..+....+... +..|..+..+.+|+++++.+
T Consensus 549 NKi~v~esKd--Y~tKn~Fss~~tTes-GyIa~as~kGDirLyDRig~rAKtalP~l---G~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 549 NKIKVVESKD--YKTKNKFSSGMTTES-GYIAAASRKGDIRLYDRIGKRAKTALPGL---GDAIKHIDVTANGKHILATC 622 (776)
T ss_pred Cceeeeeehh--ccccccccccccccC-ceEEEecCCCceeeehhhcchhhhcCccc---ccceeeeEeecCCcEEEEee
Confidence 2222211111 111122333333334 455554 5899999996544433333333 78899999999999988776
Q ss_pred cCCcEEEEecC
Q 001190 1027 CDGNIGVFDAD 1037 (1128)
Q Consensus 1027 ~dg~i~vwd~~ 1037 (1128)
..++.+-|+.
T Consensus 623 -k~yllL~d~~ 632 (776)
T COG5167 623 -KNYLLLTDVP 632 (776)
T ss_pred -cceEEEEecc
Confidence 5677777764
No 489
>PLN02153 epithiospecifier protein
Probab=84.72 E-value=70 Score=35.45 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=15.1
Q ss_pred CCCEEEEEcCC-----CcEEEEECCCCc
Q 001190 926 SLNILVSSGAD-----AQLCVWSIDTWE 948 (1128)
Q Consensus 926 d~~~l~s~~~D-----g~i~iwd~~~~~ 948 (1128)
++++++.||.+ ..+.+||..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 56677777754 247788887643
No 490
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.48 E-value=6.2 Score=46.88 Aligned_cols=135 Identities=10% Similarity=0.104 Sum_probs=77.7
Q ss_pred EEEEEEeCC-CCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc--cCCCEEEE
Q 001190 347 VISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS--PDGNYVGV 423 (1128)
Q Consensus 347 V~~v~fspd-g~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~las 423 (1128)
|+.+...-- |..+|+.+..||.|.+|.+++=-......-+-.+...........+...-...+..++++ ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 444443332 234788889999999998743110000000000000000001111222345689999998 88899999
Q ss_pred EeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCC----eEEEEEecCCCeEEEEe
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK----LLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~----~~~l~s~s~d~~i~vWd 481 (1128)
++....|.||-......-.....-..|...|-+|+|.++.. ...+++++-.|.+.+|+
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 99888888887665311111101113667899999987641 13688899999988877
No 491
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.40 E-value=5.1 Score=40.79 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=51.9
Q ss_pred EeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEE
Q 001190 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1128)
Q Consensus 352 fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~ 431 (1128)
+..++.+ |.+-+.+|.+++||+.+++.+... +.+..+-.... ... ......|..+.++.+|.-|++-+ +|...
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~-~~~---~~~~~~i~~~~lt~~G~PiV~ls-ng~~y 90 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSP-VSD---KSSSPNITSCSLTSNGVPIVTLS-NGDSY 90 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccc-ccc---CCCCCcEEEEEEcCCCCEEEEEe-CCCEE
Confidence 5556774 555678999999999999877532 11111100000 000 04667899999999998887765 46788
Q ss_pred EEEccCCC
Q 001190 432 LYSYAGSN 439 (1128)
Q Consensus 432 vwd~~~~~ 439 (1128)
.|+.+-+.
T Consensus 91 ~y~~~L~~ 98 (219)
T PF07569_consen 91 SYSPDLGC 98 (219)
T ss_pred Eeccccce
Confidence 88876543
No 492
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.21 E-value=33 Score=38.27 Aligned_cols=151 Identities=9% Similarity=0.085 Sum_probs=90.5
Q ss_pred eeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCC------CccEEEEEeccCcEEEEecC
Q 001190 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE------NIQFIFSTAIDGKIKAWLYD 526 (1128)
Q Consensus 454 v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~~wd~~ 526 (1128)
..-+....+.+.+++..|+....++-.| ..|+.+..+.-|...| +.|.|.. +.+.|+ |-.+..|.--|.+
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR 545 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPR 545 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEeccc
Confidence 3344444444544666777777888888 8899998888777653 3443321 223444 4445555445655
Q ss_pred CCCceeeecCCCC-----eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEE
Q 001190 527 TMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 527 ~~~~~~~~~~~~~-----~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 601 (1128)
..+.......... ...+..-. ...++++++. .|-|++||.-..+....+++... .|..+..+.+|++++
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~il 619 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHIL 619 (776)
T ss_pred ccCCceeeeeehhccccccccccccc-cCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEE
Confidence 5443332222111 12222222 3347777764 77799999766666666666655 777889999999988
Q ss_pred EEECCCcEEEEEC
Q 001190 602 AVGEDSQIKFWDM 614 (1128)
Q Consensus 602 ~~s~dg~i~iwd~ 614 (1128)
+.+.. .+.+-|+
T Consensus 620 aTCk~-yllL~d~ 631 (776)
T COG5167 620 ATCKN-YLLLTDV 631 (776)
T ss_pred Eeecc-eEEEEec
Confidence 87754 5555554
No 493
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.94 E-value=9.6 Score=37.25 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=32.3
Q ss_pred ceEEEEEecC-----CCCEEEEEECCCcEEEEcCCCC-CCCcccC
Q 001190 1063 YPLVVAAHPL-----EPNQFAIGLTDGSVKVMEPSES-EGKWGVS 1101 (1128)
Q Consensus 1063 ~~~~~~~~p~-----~~~~l~s~~~dg~i~iWd~~~~-~~~w~~~ 1101 (1128)
.+..++|||. ...+|++.+.+|.|.||..... .++|...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v 131 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRV 131 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeee
Confidence 6789999994 2457999999999999999876 7778864
No 494
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.33 E-value=23 Score=45.08 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=45.0
Q ss_pred CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC
Q 001190 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1128)
Q Consensus 537 ~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 616 (1128)
+...+.+..+......++... .+.+..|+.........+...... .+.++..++++..||.+.+||...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQL------ESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred cccccceeeeecCCCcceeee-----eeeeeehhcccccchhhccccccc------CccCCceEEEEEecCCEEeeecCC
Confidence 344455555554444444432 556666765544444444333221 177889999999999999999998
Q ss_pred Cee
Q 001190 617 VNI 619 (1128)
Q Consensus 617 ~~~ 619 (1128)
+..
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 765
No 495
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=83.29 E-value=69 Score=34.31 Aligned_cols=166 Identities=11% Similarity=0.085 Sum_probs=84.0
Q ss_pred eEEEEe-cCCCeEEEecC------CCCCeEEEeccCCCC----ccEEEEEeccCcEEEEecCCCCceeeecCC-------
Q 001190 476 LIKVWE-LSGRKLFNFEG------HEAPVYSICPHHKEN----IQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------- 537 (1128)
Q Consensus 476 ~i~vWd-~~g~~~~~~~~------h~~~v~~~~~~~~~~----~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------- 537 (1128)
.|.+|| .+++.++++.- ..+.+..+.+..... +...++-+..+-|.++|+.+++....+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 455677 66766665532 234566776654322 223334444568889998876554433221
Q ss_pred ------------CCeEEEEEEcC---CCCeEEEeeeccCCCceEEEEeCCCCc--------------eeeEeccccCCce
Q 001190 538 ------------GHWCTTMLYSA---DGSRLFSCGTSKDGDSFLVEWNESEGT--------------IKRTYAGFRKKSN 588 (1128)
Q Consensus 538 ------------~~~i~~~~~s~---~g~~l~~~~~~~~~~~~i~~wd~~~~~--------------~~~~~~~~~~~~v 588 (1128)
...+..++.+| +|+.|..... ..-.+|.+.+.- .++.+ +......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l-----ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL-----SSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET-----T-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeC-----CCCcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 11255666655 6666665542 112333332210 11111 2222245
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCCe---eeEEEecCCC-CCCcceEEEcC--CCCEEEEE
Q 001190 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---ILTSTDAEGG-LPNLPRLRFSK--EGNLLAVT 647 (1128)
Q Consensus 589 ~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~-~~~v~~v~~sp--~~~~l~~~ 647 (1128)
..++++++|..+++--..+.|..|+..+.- ....+..... ...+..+.+.+ +|.+.+..
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 668889988888888889999999987621 1222222121 23456777777 55444433
No 496
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.98 E-value=34 Score=33.58 Aligned_cols=136 Identities=9% Similarity=0.065 Sum_probs=79.0
Q ss_pred CCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccccc--c---c
Q 001190 842 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH--Q---K 916 (1128)
Q Consensus 842 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h--~---~ 916 (1128)
|.-+..+-.+|.-..+|.++.+++..+.- .+.=..++. |++-|..+....+++.-|.++-....++... . .
T Consensus 101 d~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~ 176 (262)
T COG3823 101 DYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVS 176 (262)
T ss_pred ceEEEEEeccceeEEEChHHhhhhccccc-CCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecc
Confidence 43455666689999999999988877652 333345544 4444656655666777776654433332211 1 1
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecC------CCCCCCccEEEEcCCCCEEEEEe
Q 001190 917 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVRMLVVH 982 (1128)
Q Consensus 917 ~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~l~~~~ 982 (1128)
.++-+.|- ||...|-.-.+..|..-+.++|+....+.+.... .........+++.|++..+....
T Consensus 177 ~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 177 KLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 22334443 5666666655666666777777766655443211 11124677899999986555543
No 497
>PLN02153 epithiospecifier protein
Probab=82.84 E-value=83 Score=34.86 Aligned_cols=193 Identities=15% Similarity=0.094 Sum_probs=89.1
Q ss_pred CCCeEEEEe-C-------CeEEEEECCCceEEEEee-C--CCC---CeeEEEEcCCCCCEEEEEeCC-----CcEEEEec
Q 001190 842 NDSYVMSAT-G-------GKISLFNMMTFKVMTTFM-S--PPP---ASTFLAFHPQDNNIIAIGTED-----STIHIYNV 902 (1128)
Q Consensus 842 dg~~la~~~-d-------g~i~vwd~~~~~~~~~~~-~--~~~---~v~~l~~s~~d~~~lasg~~d-----g~v~iwd~ 902 (1128)
++++++.|+ + ..+.+||..+.+-...-. + ... ....+.+ ++++++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEEC
Confidence 455666554 2 247888887754322111 0 110 1122233 66788888754 35788888
Q ss_pred ccce--eeecccc---cccCeeEEEEcCCCCEEEEEcCC-----------CcEEEEECCCCcccceeEEeecC-CCCCCC
Q 001190 903 RVDE--VKSKLKG---HQKRITGLAFSTSLNILVSSGAD-----------AQLCVWSIDTWEKRKSVTIHIPA-GKTPTG 965 (1128)
Q Consensus 903 ~~~~--~~~~l~~---h~~~V~~l~~s~d~~~l~s~~~D-----------g~i~iwd~~~~~~~~~~~~~~~~-~~~~~~ 965 (1128)
.+.+ .+..+.. ........+...++++++.|+.+ ..+.+||..+.+=. .+.... ......
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~---~l~~~~~~~~~r~ 185 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV---QLPDPGENFEKRG 185 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe---eCCCCCCCCCCCC
Confidence 7653 2222210 11111222223456777777754 24677888764321 111110 000011
Q ss_pred ccEEEEcCCCCEEEEEe--------------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC---
Q 001190 966 DTRVQFNADQVRMLVVH--------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD--- 1028 (1128)
Q Consensus 966 v~~v~~s~d~~~l~~~~--------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d--- 1028 (1128)
-..++. -+++.++++. ...+.+||..+.+-...-.............+..-++++++.|+..
T Consensus 186 ~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~ 264 (341)
T PLN02153 186 GAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPD 264 (341)
T ss_pred cceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCc
Confidence 112222 3455555432 1458889887665432211000001111112223367777777742
Q ss_pred -----------CcEEEEecCCCce
Q 001190 1029 -----------GNIGVFDADTLRL 1041 (1128)
Q Consensus 1029 -----------g~i~vwd~~~~~~ 1041 (1128)
+.+..+|+++.+-
T Consensus 265 ~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 265 LKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred cccccccccccccEEEEEcCccEE
Confidence 2578888877654
No 498
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.84 E-value=5.3 Score=43.39 Aligned_cols=171 Identities=12% Similarity=0.110 Sum_probs=94.4
Q ss_pred eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee-ecc-ccccc----Cee-EEEEcCCCCEEEEEcC
Q 001190 863 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-SKL-KGHQK----RIT-GLAFSTSLNILVSSGA 935 (1128)
Q Consensus 863 ~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~d~~~l~s~~~ 935 (1128)
+.++.+......+..+-..| |++.+..-+. .++.++++.+.... +++ ....+ .|+ .+..-..|.-|..++.
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 33444555667788999999 8988876664 78899988765322 111 11111 122 2222345666777888
Q ss_pred CCcEEEE-ECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE-EecCeEEEEecCCcccccccccCCCCCCCeEEE
Q 001190 936 DAQLCVW-SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCA 1013 (1128)
Q Consensus 936 Dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l 1013 (1128)
||.|.-| |+..+............ -.+.++..+.-..+.+-+++ ...|++.++.....+.+..-.. -..+.-+
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~-l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~----~~~~~~~ 363 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFK-LAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA----YQAPQLV 363 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccc-cCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh----hcCccee
Confidence 9988777 55443321111111100 00122222221122222333 2367777766554444332222 3456788
Q ss_pred EEeeCCCEEEEEecCCcEEEEecCCCce
Q 001190 1014 VYSCNSQLVFATFCDGNIGVFDADTLRL 1041 (1128)
Q Consensus 1014 ~~s~dg~~l~t~~~dg~i~vwd~~~~~~ 1041 (1128)
++||.+.+|++- ..|.|+++.+++...
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCC
Confidence 999999998875 477899999887543
No 499
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.73 E-value=1.1e+02 Score=36.08 Aligned_cols=418 Identities=11% Similarity=0.092 Sum_probs=0.0
Q ss_pred ccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEE
Q 001190 435 YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFST 514 (1128)
Q Consensus 435 ~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 514 (1128)
+.+.++-+ .......++++.-+|.|+ -++++..||+|++++...+....+-....+-..+.|...+ |++.
T Consensus 2 ikt~~~s~----~~k~~e~~~aiqshp~~~--s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg----l~~~ 71 (1636)
T KOG3616|consen 2 IKTFDCSR----DPKEDEFTTAIQSHPGGQ--SFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG----LVTA 71 (1636)
T ss_pred CccccccC----CccccceeeeeeecCCCc--eEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc----eEEE
Q ss_pred eccCcEEEEecCCCCceeeecCCCC---eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEE
Q 001190 515 AIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (1128)
Q Consensus 515 ~~dg~i~~wd~~~~~~~~~~~~~~~---~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 591 (1128)
..|..+.-|. +.+-....+..... ...++...|..+.++..-. +.|..+
T Consensus 72 tsdrr~la~~-~dgvvqqqfdyndqsekefss~~cdptaqnvvgtlc---------------------------ggv~q~ 123 (1636)
T KOG3616|consen 72 TSDRRALAWK-EDGVVQQQFDYNDQSEKEFSSILCDPTAQNVVGTLC---------------------------GGVEQF 123 (1636)
T ss_pred eccchhheee-ccCcchhhccccchhhhhccceecCchhhhhhhhhc---------------------------cceeee
Q ss_pred EEe-----CCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccc
Q 001190 592 QFD-----TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (1128)
Q Consensus 592 ~~~-----~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1128)
.++ -.+++=.+--.-..|.+-|+.++.....+...+- .|--+.+-...++++.-... +|.+=|+++..-..-
T Consensus 124 dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~--aidelkilgkdryli~~ts~-siii~d~es~rfsei 200 (1636)
T KOG3616|consen 124 DCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGL--AIDELKILGKDRYLIAHTSE-SIIIADLESNRFSEI 200 (1636)
T ss_pred hHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCc--chhhhhhccccceEEeeccc-cEEEeecccchhhhh
Q ss_pred cccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEE
Q 001190 667 AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEI 746 (1128)
Q Consensus 667 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~ 746 (1128)
..++... ..-..++..+
T Consensus 201 ~wqgsgg--------------------------------------------------------------~ekfffd~~n- 217 (1636)
T KOG3616|consen 201 AWQGSGG--------------------------------------------------------------HEKFFFDFEN- 217 (1636)
T ss_pred hcccCCC--------------------------------------------------------------cceeeeecCc-
Q ss_pred eeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCC----------------CCCCceeeeecc
Q 001190 747 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ----------------NPSGKATASAVP 810 (1128)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~----------------~~~~~~~~~~~~ 810 (1128)
.|+.|....-.++--+.|+++---....... ..-.......-.
T Consensus 218 ---------------------~cli~nageltlveyg~d~slg~vrte~~nphlisvqike~~qksygrnfdse~n~~~a 276 (1636)
T KOG3616|consen 218 ---------------------CCLIFNAGELTLVEYGNDDSLGSVRTEFMNPHLISVQIKEACQKSYGRNFDSEDNKKLA 276 (1636)
T ss_pred ---------------------EEEEEecCeeEEEEecCCCcchhhhhhhcCceeeehHHHHHHHHhhCCCCCcchhhhHH
Q ss_pred ceeccCCCc-cccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEE-EECCCceEEEEeeCCCCCeeEEEEcCCCCC
Q 001190 811 QHWLPSSGL-LMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISL-FNMMTFKVMTTFMSPPPASTFLAFHPQDNN 886 (1128)
Q Consensus 811 ~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~v-wd~~~~~~~~~~~~~~~~v~~l~~s~~d~~ 886 (1128)
..-|+.+|+ ++...+ ......++-|--..+--+... =-.|.| -|+-.|.....+. |.+.|--+.... .+.
T Consensus 277 ~~~di~tgqicvfsdf----lqrrtssvffiikakakifndlqlphi~ipvdli~g~~~~~in-h~~~vdwielne-~~~ 350 (1636)
T KOG3616|consen 277 EHIDIKTGQICVFSDF----LQRRTSSVFFIIKAKAKIFNDLQLPHIAIPVDLIGGQNEGFIN-HEGAVDWIELNE-RAH 350 (1636)
T ss_pred HHhccccCceeeehhh----hhhccccceeeehhhhhhcccccCcceeeeeecccCccccccc-ccccccceeccc-hhh
Q ss_pred EEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCc
Q 001190 887 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 966 (1128)
Q Consensus 887 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 966 (1128)
.|..-...-.+.++|+.+.+....+ .-.+-+.|-|....++.-+.|.....|+++..++...+.+. +.|
T Consensus 351 kllfrdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~dnl~iwyn~d~peqvt~~kik-------gdv 419 (1636)
T KOG3616|consen 351 KLLFRDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGDNLCIWYNIDAPEQVTMFKIK-------GDV 419 (1636)
T ss_pred hhhcccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCCceEEEecCCcchhheeeEec-------ccc
Q ss_pred cEEEEcCCCCEEEEEecCeEEEEecCCc
Q 001190 967 TRVQFNADQVRMLVVHETQLAIYDASKM 994 (1128)
Q Consensus 967 ~~v~~s~d~~~l~~~~d~~i~v~d~~~~ 994 (1128)
..+.-..+..-+++-..-.-.-|.+..+
T Consensus 420 ~~l~r~~~kteviv~e~takvayeld~~ 447 (1636)
T KOG3616|consen 420 EALERDADKTEVIVMEGTAKVAYELDEG 447 (1636)
T ss_pred hhhhcCCCceeEEEeecceeEEEEecCc
No 500
>PLN02193 nitrile-specifier protein
Probab=82.40 E-value=1.1e+02 Score=35.81 Aligned_cols=164 Identities=11% Similarity=0.074 Sum_probs=76.9
Q ss_pred CCCEEEEEcCC-----CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-c-----CeEEEEecCCc
Q 001190 926 SLNILVSSGAD-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E-----TQLAIYDASKM 994 (1128)
Q Consensus 926 d~~~l~s~~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d-----~~i~v~d~~~~ 994 (1128)
++++++.|+.+ ..+..+|+.+.+-...... ...........++. -+++.++.+. + ..+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~--~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPV--EEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcC--CCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 56677777765 3577888876432111111 00001011112222 2444444442 2 34678887765
Q ss_pred ccccccccCCCCCCCeEEEEEeeCCCEEEEEecC----CcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEe
Q 001190 995 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD----GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAH 1070 (1128)
Q Consensus 995 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1128)
+-...-.............+..-++++++.++.+ ..+.+||+.+.+-... ......+.... .| .++.+
T Consensus 305 ~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~-~~~g~~P~~R~--~~----~~~~~- 376 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQV-ETFGVRPSERS--VF----ASAAV- 376 (470)
T ss_pred EEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEe-ccCCCCCCCcc--ee----EEEEE-
Confidence 4322111000000111111223477877777755 4589999988764332 21111111110 11 11222
Q ss_pred cCCCCEEEEEECC--------------CcEEEEcCCCCCCCcccCCCC
Q 001190 1071 PLEPNQFAIGLTD--------------GSVKVMEPSESEGKWGVSPPV 1104 (1128)
Q Consensus 1071 p~~~~~l~s~~~d--------------g~i~iWd~~~~~~~w~~~~p~ 1104 (1128)
++++++.|+.+ +.+.++|+.+.+ |...++.
T Consensus 377 --~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~--W~~~~~~ 420 (470)
T PLN02193 377 --GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ--WERLDKF 420 (470)
T ss_pred --CCEEEEECCccCCccccccCccceeccEEEEEcCcCE--EEEcccC
Confidence 46788888854 246777777654 9876543
Done!