Query 001190
Match_columns 1128
No_of_seqs 839 out of 4409
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 15:39:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 2E-68 7E-73 647.9 78.3 564 340-1090 12-577 (577)
2 1nr0_A Actin interacting prote 100.0 9.9E-66 3.4E-70 624.2 70.9 575 343-1092 17-610 (611)
3 1nr0_A Actin interacting prote 100.0 1.4E-62 4.6E-67 596.6 73.9 547 327-1037 43-610 (611)
4 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-63 8.6E-68 659.0 65.3 618 339-1093 610-1249(1249)
5 2ymu_A WD-40 repeat protein; u 100.0 1.6E-61 5.6E-66 587.3 72.5 533 327-1035 42-577 (577)
6 1pgu_A Actin interacting prote 100.0 2.5E-59 8.5E-64 573.4 65.6 558 342-1038 16-614 (615)
7 2oaj_A Protein SNI1; WD40 repe 100.0 2.4E-57 8.3E-62 569.1 66.8 602 337-1047 10-792 (902)
8 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-57 3.8E-62 604.9 66.7 569 400-1096 609-1210(1249)
9 1pgu_A Actin interacting prote 100.0 2E-56 6.7E-61 547.6 61.2 560 403-1093 15-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 6E-55 2E-59 547.4 57.4 587 402-1097 13-787 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 3.3E-47 1.1E-51 482.0 59.0 562 338-1038 6-601 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 7.1E-46 2.4E-50 469.8 56.7 574 400-1093 7-601 (814)
13 1vyh_C Platelet-activating fac 100.0 5.5E-45 1.9E-49 418.8 40.5 283 342-658 106-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 1.8E-39 6.2E-44 359.0 41.2 285 342-658 30-319 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 5.7E-39 1.9E-43 359.1 43.4 292 335-657 45-340 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 8.7E-39 3E-43 359.2 43.0 294 336-657 55-354 (354)
17 3frx_A Guanine nucleotide-bind 100.0 6.9E-39 2.4E-43 354.6 41.0 299 337-661 9-318 (319)
18 2ynn_A Coatomer subunit beta'; 100.0 8.2E-39 2.8E-43 351.5 40.3 290 337-660 5-302 (304)
19 3iz6_a 40S ribosomal protein R 100.0 6.1E-39 2.1E-43 364.8 36.6 301 335-661 56-376 (380)
20 1vyh_C Platelet-activating fac 100.0 2.5E-38 8.7E-43 363.3 40.2 285 402-793 104-409 (410)
21 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.5E-38 2.6E-42 350.6 40.5 302 336-663 6-338 (345)
22 4g56_B MGC81050 protein; prote 100.0 2.2E-38 7.5E-43 356.1 36.1 292 342-661 40-344 (357)
23 3ow8_A WD repeat-containing pr 100.0 7.3E-38 2.5E-42 346.1 39.7 287 402-793 28-319 (321)
24 1got_B GT-beta; complex (GTP-b 100.0 2.4E-37 8.2E-42 345.9 42.3 287 400-792 49-340 (340)
25 4gqb_B Methylosome protein 50; 100.0 9.7E-38 3.3E-42 347.4 36.0 295 763-1095 29-333 (344)
26 4g56_B MGC81050 protein; prote 100.0 4.7E-38 1.6E-42 353.4 33.6 317 730-1095 20-345 (357)
27 4gqb_B Methylosome protein 50; 100.0 3.8E-37 1.3E-41 342.6 39.6 297 342-661 28-332 (344)
28 1r5m_A SIR4-interacting protei 100.0 5.6E-37 1.9E-41 356.1 41.2 328 402-945 41-424 (425)
29 4ery_A WD repeat-containing pr 100.0 2.3E-36 8E-41 334.2 43.8 290 337-659 15-311 (312)
30 1r5m_A SIR4-interacting protei 100.0 7.5E-37 2.5E-41 355.0 41.3 299 338-662 39-363 (425)
31 2ynn_A Coatomer subunit beta'; 100.0 1.1E-36 3.8E-41 334.5 39.6 249 400-661 7-260 (304)
32 2xzm_R RACK1; ribosome, transl 100.0 1.4E-36 4.7E-41 340.4 40.8 294 342-661 19-341 (343)
33 1erj_A Transcriptional repress 100.0 1.3E-36 4.5E-41 347.3 40.5 307 337-660 57-389 (393)
34 2pbi_B Guanine nucleotide-bind 100.0 2.1E-36 7.3E-41 339.7 41.5 287 401-792 59-354 (354)
35 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-36 8.4E-41 338.3 40.1 212 401-660 10-225 (345)
36 2hes_X YDR267CP; beta-propelle 100.0 2.1E-36 7E-41 336.6 38.9 294 337-660 6-328 (330)
37 2pm9_A Protein WEB1, protein t 100.0 1E-37 3.5E-42 361.2 29.5 295 341-662 9-339 (416)
38 1k32_A Tricorn protease; prote 100.0 1.9E-35 6.4E-40 381.2 53.7 554 343-1095 13-639 (1045)
39 3iz6_a 40S ribosomal protein R 100.0 5.2E-37 1.8E-41 348.9 33.5 295 401-795 61-375 (380)
40 4aow_A Guanine nucleotide-bind 100.0 6E-36 2.1E-40 335.7 40.2 302 335-662 28-339 (340)
41 2pm9_A Protein WEB1, protein t 100.0 2.4E-37 8.1E-42 358.1 29.3 336 406-947 12-415 (416)
42 3frx_A Guanine nucleotide-bind 100.0 1.1E-35 3.7E-40 329.0 41.3 247 401-661 12-268 (319)
43 1gxr_A ESG1, transducin-like e 100.0 7E-36 2.4E-40 334.7 38.0 285 343-661 8-297 (337)
44 4ery_A WD repeat-containing pr 100.0 3.7E-35 1.3E-39 324.5 42.3 251 400-661 17-269 (312)
45 3vl1_A 26S proteasome regulato 100.0 6.9E-36 2.4E-40 346.2 31.5 282 346-661 58-366 (420)
46 3vl1_A 26S proteasome regulato 100.0 3.7E-35 1.3E-39 340.1 36.1 344 407-946 57-419 (420)
47 3dm0_A Maltose-binding peripla 100.0 7.6E-35 2.6E-39 359.6 40.8 293 341-659 379-692 (694)
48 2xzm_R RACK1; ribosome, transl 100.0 3.4E-34 1.2E-38 320.9 42.1 247 400-661 15-286 (343)
49 1gxr_A ESG1, transducin-like e 100.0 3.3E-34 1.1E-38 321.0 41.9 282 763-1091 50-335 (337)
50 3ei3_B DNA damage-binding prot 100.0 1.2E-34 4E-39 331.1 37.6 290 341-660 70-382 (383)
51 3gre_A Serine/threonine-protei 100.0 1.5E-35 5.3E-40 345.0 30.6 382 351-943 34-437 (437)
52 2hes_X YDR267CP; beta-propelle 100.0 4E-34 1.4E-38 318.1 40.2 307 573-1038 3-328 (330)
53 2j04_B YDR362CP, TAU91; beta p 100.0 7.7E-36 2.6E-40 348.6 24.6 285 334-643 123-457 (524)
54 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.6E-33 9E-38 326.7 44.7 276 340-661 114-392 (445)
55 3v7d_B Cell division control p 100.0 3.3E-33 1.1E-37 328.2 45.6 292 327-661 104-422 (464)
56 1erj_A Transcriptional repress 100.0 1.2E-33 4.1E-38 322.7 40.6 242 404-661 62-342 (393)
57 1k32_A Tricorn protease; prote 100.0 7.2E-33 2.5E-37 357.1 52.6 484 335-995 43-639 (1045)
58 1sq9_A Antiviral protein SKI8; 100.0 7E-34 2.4E-38 326.6 38.1 291 342-661 14-396 (397)
59 3zwl_B Eukaryotic translation 100.0 2E-33 6.7E-38 319.2 41.4 289 337-661 25-347 (369)
60 2j04_B YDR362CP, TAU91; beta p 100.0 7E-35 2.4E-39 340.5 29.1 349 405-904 132-517 (524)
61 4e54_B DNA damage-binding prot 100.0 1.5E-34 5E-39 335.5 31.1 294 341-661 116-431 (435)
62 1k8k_C P40, ARP2/3 complex 41 100.0 7.6E-34 2.6E-38 323.1 35.7 293 343-666 7-367 (372)
63 3odt_A Protein DOA1; ubiquitin 100.0 3.1E-33 1E-37 309.5 39.1 287 336-661 9-297 (313)
64 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.6E-33 3.3E-37 321.9 44.4 319 401-904 113-442 (445)
65 4aow_A Guanine nucleotide-bind 100.0 6.4E-33 2.2E-37 311.0 40.9 298 401-795 33-337 (340)
66 3v7d_B Cell division control p 100.0 1.2E-32 4E-37 323.5 44.7 345 576-1035 113-460 (464)
67 3k26_A Polycomb protein EED; W 100.0 5.1E-34 1.7E-38 323.7 31.9 290 342-659 16-365 (366)
68 3i2n_A WD repeat-containing pr 100.0 1.6E-33 5.3E-38 318.5 34.5 289 342-661 16-354 (357)
69 3ei3_B DNA damage-binding prot 100.0 3.9E-33 1.3E-37 318.4 36.9 316 568-1093 57-382 (383)
70 4h5i_A Guanine nucleotide-exch 100.0 3.7E-33 1.3E-37 314.4 33.3 301 343-661 13-344 (365)
71 2j04_A TAU60, YPL007P, hypothe 100.0 5E-34 1.7E-38 321.1 24.7 315 343-784 14-350 (588)
72 3dwl_C Actin-related protein 2 100.0 2.5E-34 8.4E-39 327.7 22.1 285 343-658 10-377 (377)
73 3zwl_B Eukaryotic translation 100.0 7E-32 2.4E-36 306.4 41.2 303 399-796 25-347 (369)
74 4a11_B DNA excision repair pro 100.0 5.7E-33 2E-37 320.3 32.1 350 563-1093 22-405 (408)
75 3gre_A Serine/threonine-protei 100.0 7.5E-33 2.6E-37 322.3 32.5 296 335-657 52-437 (437)
76 4aez_A CDC20, WD repeat-contai 100.0 4E-32 1.4E-36 311.6 38.0 290 342-664 89-384 (401)
77 4gga_A P55CDC, cell division c 100.0 9.1E-32 3.1E-36 310.6 40.6 282 346-661 107-396 (420)
78 4e54_B DNA damage-binding prot 100.0 6E-33 2.1E-37 321.9 30.2 303 577-1042 112-434 (435)
79 2pm7_B Protein transport prote 100.0 3.3E-32 1.1E-36 297.7 33.8 252 401-660 4-285 (297)
80 3dm0_A Maltose-binding peripla 100.0 5.1E-32 1.7E-36 334.3 39.3 249 400-661 376-633 (694)
81 3dw8_B Serine/threonine-protei 100.0 2.5E-32 8.7E-37 319.1 33.8 298 341-658 25-444 (447)
82 2pm7_B Protein transport prote 100.0 5.7E-32 1.9E-36 295.8 34.1 249 341-615 6-284 (297)
83 1sq9_A Antiviral protein SKI8; 100.0 5.4E-32 1.8E-36 310.8 35.5 252 400-661 10-323 (397)
84 1k8k_C P40, ARP2/3 complex 41 100.0 2E-31 6.8E-36 303.1 37.4 244 402-660 4-274 (372)
85 4a11_B DNA excision repair pro 100.0 2.2E-31 7.6E-36 307.0 38.3 302 340-662 39-367 (408)
86 3k26_A Polycomb protein EED; W 100.0 1.1E-31 3.8E-36 304.4 34.8 250 400-661 12-319 (366)
87 4ggc_A P55CDC, cell division c 100.0 7.3E-31 2.5E-35 291.1 40.2 280 347-660 28-315 (318)
88 2j04_A TAU60, YPL007P, hypothe 100.0 2.7E-33 9.2E-38 315.2 20.0 223 405-661 14-255 (588)
89 3dwl_C Actin-related protein 2 100.0 7.8E-33 2.7E-37 315.3 24.1 242 402-659 7-280 (377)
90 4h5i_A Guanine nucleotide-exch 100.0 1.3E-31 4.5E-36 301.6 32.1 293 451-947 14-344 (365)
91 3i2n_A WD repeat-containing pr 100.0 1.3E-31 4.3E-36 302.8 31.9 301 762-1095 16-355 (357)
92 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-30 3.9E-35 288.9 36.6 240 400-661 12-256 (313)
93 1yfq_A Cell cycle arrest prote 100.0 5.3E-31 1.8E-35 295.7 34.0 279 342-656 9-320 (342)
94 1p22_A F-BOX/WD-repeat protein 100.0 5.8E-31 2E-35 305.5 35.1 273 342-662 131-416 (435)
95 3bg1_A Protein SEC13 homolog; 100.0 1.2E-31 4E-36 296.1 27.3 248 342-615 11-292 (316)
96 3bg1_A Protein SEC13 homolog; 100.0 1.3E-31 4.6E-36 295.7 25.4 250 401-660 8-293 (316)
97 2aq5_A Coronin-1A; WD40 repeat 100.0 4.9E-31 1.7E-35 302.9 30.4 294 347-661 37-343 (402)
98 4aez_A CDC20, WD repeat-contai 100.0 1.3E-30 4.6E-35 298.9 33.7 285 763-1097 90-384 (401)
99 4gga_A P55CDC, cell division c 100.0 4.2E-30 1.4E-34 296.6 37.5 283 766-1095 107-397 (420)
100 3mmy_A MRNA export factor; mRN 100.0 2E-30 7E-35 294.2 33.3 287 336-658 30-344 (368)
101 4ggc_A P55CDC, cell division c 100.0 2E-29 6.9E-34 279.5 37.7 282 767-1095 28-317 (318)
102 3f3f_A Nucleoporin SEH1; struc 100.0 3.4E-30 1.1E-34 290.0 30.7 297 340-661 7-338 (351)
103 3dw8_B Serine/threonine-protei 100.0 1.9E-29 6.5E-34 294.7 36.3 309 763-1090 27-443 (447)
104 3jrp_A Fusion protein of prote 100.0 7.5E-30 2.6E-34 290.9 32.0 251 342-618 9-289 (379)
105 1yfq_A Cell cycle arrest prote 100.0 4.1E-29 1.4E-33 280.3 34.1 249 402-661 7-283 (342)
106 3jrp_A Fusion protein of prote 100.0 2.4E-29 8.3E-34 286.6 31.7 253 401-661 6-288 (379)
107 1p22_A F-BOX/WD-repeat protein 100.0 7.1E-29 2.4E-33 288.0 35.8 233 403-661 130-366 (435)
108 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.2E-28 7.4E-33 285.1 35.4 299 345-661 5-392 (450)
109 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-28 7E-33 275.3 33.6 263 830-1096 10-340 (351)
110 3mmy_A MRNA export factor; mRN 100.0 2.2E-28 7.4E-33 277.5 33.9 303 480-948 24-348 (368)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-28 3.5E-33 283.5 30.9 276 407-693 35-329 (402)
112 1l0q_A Surface layer protein; 100.0 3E-27 1E-31 270.6 41.7 268 357-661 2-276 (391)
113 3jro_A Fusion protein of prote 100.0 3.3E-29 1.1E-33 310.3 27.1 251 342-618 7-287 (753)
114 3bws_A Protein LP49; two-domai 100.0 1.6E-27 5.6E-32 276.9 36.7 302 327-659 103-431 (433)
115 3vu4_A KMHSV2; beta-propeller 100.0 3.9E-28 1.3E-32 272.5 30.2 276 342-661 17-337 (355)
116 3vu4_A KMHSV2; beta-propeller 100.0 3E-27 1E-31 265.3 36.9 238 402-661 15-272 (355)
117 2xyi_A Probable histone-bindin 100.0 5.1E-28 1.7E-32 279.8 30.7 267 335-617 119-411 (430)
118 3bws_A Protein LP49; two-domai 100.0 6.8E-27 2.3E-31 271.7 39.3 371 343-904 26-432 (433)
119 2w18_A PALB2, fancn, partner a 100.0 6.5E-27 2.2E-31 247.0 33.5 220 763-1036 110-355 (356)
120 2xyi_A Probable histone-bindin 100.0 3.7E-27 1.3E-31 272.5 34.4 311 342-661 43-411 (430)
121 1l0q_A Surface layer protein; 100.0 4.3E-26 1.5E-30 260.9 42.5 327 467-980 4-364 (391)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-27 8.8E-32 276.0 32.1 248 830-1099 101-397 (450)
123 3lrv_A PRE-mRNA-splicing facto 100.0 3.3E-27 1.1E-31 264.3 30.3 279 458-946 43-333 (343)
124 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-27 3.9E-32 268.0 26.2 268 350-659 42-332 (343)
125 3jro_A Fusion protein of prote 100.0 8.2E-28 2.8E-32 297.8 27.2 253 401-661 4-286 (753)
126 4gq1_A NUP37; propeller, trans 100.0 1.7E-27 5.8E-32 271.5 23.3 303 345-659 16-388 (393)
127 2w18_A PALB2, fancn, partner a 100.0 5E-26 1.7E-30 240.2 30.8 283 347-658 42-355 (356)
128 1nir_A Nitrite reductase; hemo 99.9 3.1E-25 1.1E-29 261.6 39.3 332 506-1046 147-522 (543)
129 4gq1_A NUP37; propeller, trans 99.9 8.9E-27 3.1E-31 265.5 23.7 250 341-615 86-388 (393)
130 1nir_A Nitrite reductase; hemo 99.9 9.8E-25 3.4E-29 257.3 40.2 326 459-954 145-522 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.1E-24 7.3E-29 247.1 28.8 305 345-690 63-410 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 2.7E-23 9.3E-28 259.2 36.9 303 344-660 36-413 (741)
133 2ecf_A Dipeptidyl peptidase IV 99.9 8.1E-23 2.8E-27 254.9 36.1 244 830-1095 150-461 (741)
134 1xfd_A DIP, dipeptidyl aminope 99.9 1.5E-23 5.2E-28 260.8 28.8 321 346-697 18-429 (723)
135 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.5E-22 5.2E-27 231.6 30.2 278 327-641 97-409 (415)
136 3u4y_A Uncharacterized protein 99.9 1.3E-21 4.6E-26 217.7 36.6 279 350-661 3-305 (331)
137 1xfd_A DIP, dipeptidyl aminope 99.9 3.6E-22 1.2E-26 248.5 30.9 385 540-1045 18-450 (723)
138 3vgz_A Uncharacterized protein 99.9 6.2E-21 2.1E-25 214.5 35.4 277 341-651 37-335 (353)
139 2z3z_A Dipeptidyl aminopeptida 99.9 2.8E-21 9.7E-26 239.4 34.8 238 408-659 27-341 (706)
140 2z3z_A Dipeptidyl aminopeptida 99.9 2E-21 7E-26 240.7 30.9 321 454-948 28-437 (706)
141 2ojh_A Uncharacterized protein 99.9 2.4E-21 8.1E-26 211.7 27.1 257 362-651 17-293 (297)
142 1ri6_A Putative isomerase YBHE 99.9 4.2E-20 1.4E-24 206.7 36.2 273 357-659 5-307 (343)
143 1ri6_A Putative isomerase YBHE 99.9 8.4E-21 2.9E-25 212.4 30.1 245 830-1094 36-309 (343)
144 3u4y_A Uncharacterized protein 99.9 1.7E-20 5.7E-25 208.9 31.8 289 771-1099 4-310 (331)
145 3vgz_A Uncharacterized protein 99.9 9E-20 3.1E-24 205.0 34.2 273 764-1084 40-335 (353)
146 3hfq_A Uncharacterized protein 99.9 1.7E-19 5.7E-24 202.1 31.6 249 830-1095 38-321 (347)
147 1pby_B Quinohemoprotein amine 99.9 9.7E-20 3.3E-24 203.2 28.8 268 359-662 3-312 (337)
148 1pby_B Quinohemoprotein amine 99.9 3.3E-19 1.1E-23 198.8 32.8 303 509-916 2-322 (337)
149 1z68_A Fibroblast activation p 99.9 7.6E-20 2.6E-24 227.0 29.7 264 349-656 20-340 (719)
150 2ojh_A Uncharacterized protein 99.8 1.5E-19 5.3E-24 197.2 27.8 249 327-607 26-293 (297)
151 2oit_A Nucleoporin 214KDA; NH2 99.8 4.7E-19 1.6E-23 203.1 32.7 316 764-1093 36-405 (434)
152 3o4h_A Acylamino-acid-releasin 99.8 8.6E-20 2.9E-24 220.1 27.9 270 344-658 21-313 (582)
153 2oit_A Nucleoporin 214KDA; NH2 99.8 4.2E-19 1.5E-23 203.4 30.1 259 344-614 36-331 (434)
154 1z68_A Fibroblast activation p 99.8 3.3E-19 1.1E-23 221.2 28.1 287 767-1095 62-445 (719)
155 3hfq_A Uncharacterized protein 99.8 3E-18 1E-22 191.9 31.3 269 327-621 20-324 (347)
156 3o4h_A Acylamino-acid-releasin 99.8 1.1E-18 3.7E-23 210.5 28.3 235 406-658 21-274 (582)
157 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-17 3.9E-22 207.0 36.9 273 346-661 18-354 (740)
158 4a5s_A Dipeptidyl peptidase 4 99.8 1.4E-17 4.6E-22 206.3 37.2 381 541-1046 19-457 (740)
159 3pe7_A Oligogalacturonate lyas 99.8 9.4E-18 3.2E-22 191.2 33.1 295 339-659 25-381 (388)
160 3scy_A Hypothetical bacterial 99.8 2.3E-17 7.8E-22 185.8 34.0 249 830-1095 48-341 (361)
161 1jmx_B Amine dehydrogenase; ox 99.8 5.9E-18 2E-22 189.8 28.7 275 349-661 4-326 (349)
162 3scy_A Hypothetical bacterial 99.8 7.6E-17 2.6E-21 181.5 37.5 271 359-659 15-336 (361)
163 1jmx_B Amine dehydrogenase; ox 99.8 4.4E-18 1.5E-22 190.8 25.2 244 769-1046 4-333 (349)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.1E-17 3.6E-22 188.4 27.9 248 832-1094 40-342 (365)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.5E-17 1.5E-21 183.3 32.0 247 405-661 38-342 (365)
166 3pe7_A Oligogalacturonate lyas 99.8 1.9E-17 6.5E-22 188.7 26.5 253 402-661 26-330 (388)
167 2oiz_A Aromatic amine dehydrog 99.8 8E-16 2.7E-20 171.8 33.4 312 507-928 14-360 (361)
168 2oiz_A Aromatic amine dehydrog 99.7 1E-15 3.5E-20 171.0 30.9 294 355-690 14-360 (361)
169 3c5m_A Oligogalacturonate lyas 99.7 2.3E-16 7.9E-21 180.2 26.0 283 347-659 38-381 (396)
170 3c5m_A Oligogalacturonate lyas 99.7 2.3E-16 7.7E-21 180.3 24.3 318 567-1041 13-387 (396)
171 3azo_A Aminopeptidase; POP fam 99.7 5.9E-15 2E-19 181.1 32.4 252 400-659 17-322 (662)
172 3azo_A Aminopeptidase; POP fam 99.7 3.8E-15 1.3E-19 182.7 29.4 286 342-661 21-370 (662)
173 3fvz_A Peptidyl-glycine alpha- 99.7 8.4E-15 2.9E-19 161.8 28.9 251 831-1094 23-323 (329)
174 1qks_A Cytochrome CD1 nitrite 99.7 1E-13 3.4E-18 162.4 38.8 331 595-1046 165-546 (567)
175 4a2l_A BT_4663, two-component 99.7 9.4E-11 3.2E-15 146.2 67.3 585 344-1093 42-659 (795)
176 3fvz_A Peptidyl-glycine alpha- 99.7 1.7E-14 5.9E-19 159.3 29.1 248 345-616 24-322 (329)
177 1qks_A Cytochrome CD1 nitrite 99.7 5.8E-13 2E-17 156.0 42.9 187 467-661 169-374 (567)
178 1q7f_A NHL, brain tumor CG1071 99.7 6.9E-14 2.4E-18 151.3 32.8 246 343-617 28-281 (286)
179 2gop_A Trilobed protease; beta 99.7 1.4E-14 4.9E-19 161.9 28.0 262 345-659 15-330 (347)
180 1q7f_A NHL, brain tumor CG1071 99.6 1.2E-13 4.1E-18 149.4 31.8 244 404-660 27-280 (286)
181 4a2l_A BT_4663, two-component 99.6 2.3E-10 7.7E-15 142.8 64.4 535 344-1037 87-658 (795)
182 2dg1_A DRP35, lactonase; beta 99.6 1.7E-13 6E-18 152.0 30.6 272 345-651 6-301 (333)
183 2xdw_A Prolyl endopeptidase; a 99.6 2.1E-13 7.3E-18 167.9 32.9 249 403-662 121-416 (710)
184 2gop_A Trilobed protease; beta 99.6 1.4E-13 4.6E-18 153.9 28.2 220 833-1092 60-330 (347)
185 2dg1_A DRP35, lactonase; beta 99.6 2.9E-13 9.9E-18 150.2 29.0 274 765-1083 6-300 (333)
186 3dsm_A Uncharacterized protein 99.6 9E-14 3.1E-18 153.2 24.3 243 832-1100 44-308 (328)
187 3e5z_A Putative gluconolactona 99.6 8.9E-13 3.1E-17 143.3 31.8 244 340-619 23-289 (296)
188 3v9f_A Two-component system se 99.6 5E-09 1.7E-13 130.3 68.5 593 344-1093 18-656 (781)
189 2bkl_A Prolyl endopeptidase; m 99.6 2.3E-13 8E-18 167.0 28.5 246 403-662 117-399 (695)
190 3no2_A Uncharacterized protein 99.6 2.7E-13 9.4E-18 144.4 24.9 251 841-1108 3-267 (276)
191 3no2_A Uncharacterized protein 99.6 9.5E-13 3.2E-17 140.2 28.3 243 359-636 7-272 (276)
192 2xdw_A Prolyl endopeptidase; a 99.6 4.2E-13 1.4E-17 165.3 29.3 248 343-618 123-416 (710)
193 2z2n_A Virginiamycin B lyase; 99.6 1.6E-11 5.4E-16 133.6 38.6 281 763-1095 13-297 (299)
194 2bkl_A Prolyl endopeptidase; m 99.6 1.2E-13 4E-18 169.6 23.6 249 343-620 119-401 (695)
195 3e5z_A Putative gluconolactona 99.6 2E-12 6.9E-17 140.5 30.3 236 402-660 23-286 (296)
196 2z2n_A Virginiamycin B lyase; 99.6 2.3E-11 7.7E-16 132.4 38.6 282 343-661 13-296 (299)
197 1rwi_B Serine/threonine-protei 99.5 1.3E-12 4.3E-17 140.0 26.3 239 833-1095 25-266 (270)
198 3dsm_A Uncharacterized protein 99.5 1.3E-12 4.3E-17 144.0 26.7 268 365-659 15-301 (328)
199 2mad_H Methylamine dehydrogena 99.5 1.9E-11 6.6E-16 136.1 36.3 202 834-1045 127-357 (373)
200 3sjl_D Methylamine dehydrogena 99.5 3.8E-12 1.3E-16 138.9 29.5 205 834-1047 139-372 (386)
201 1rwi_B Serine/threonine-protei 99.5 2.4E-12 8.3E-17 137.8 27.0 240 346-619 25-267 (270)
202 3sjl_D Methylamine dehydrogena 99.5 6.2E-12 2.1E-16 137.2 29.4 300 504-974 40-384 (386)
203 1yr2_A Prolyl oligopeptidase; 99.5 2.4E-12 8.4E-17 159.0 28.6 247 403-662 159-443 (741)
204 3v9f_A Two-component system se 99.5 4.7E-08 1.6E-12 121.5 64.8 558 406-1094 18-612 (781)
205 2qc5_A Streptogramin B lactona 99.5 1.8E-10 6E-15 125.3 37.9 279 343-658 18-298 (300)
206 2mad_H Methylamine dehydrogena 99.5 1.9E-10 6.4E-15 128.1 36.3 277 351-663 27-353 (373)
207 3c75_H MADH, methylamine dehyd 99.4 1.7E-11 5.9E-16 136.5 27.5 204 835-1046 180-410 (426)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 4.1E-11 1.4E-15 131.4 29.8 238 832-1093 18-299 (314)
209 2qc5_A Streptogramin B lactona 99.4 3.8E-10 1.3E-14 122.7 36.6 278 763-1092 18-299 (300)
210 1yr2_A Prolyl oligopeptidase; 99.4 1.2E-11 4E-16 153.0 25.5 247 343-619 161-444 (741)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.1E-10 3.8E-15 127.9 29.8 248 343-616 16-299 (314)
212 3c75_H MADH, methylamine dehyd 99.4 7E-11 2.4E-15 131.6 25.5 273 354-662 82-404 (426)
213 1xip_A Nucleoporin NUP159; bet 99.3 6.2E-11 2.1E-15 130.1 23.2 240 832-1090 38-309 (388)
214 3g4e_A Regucalcin; six bladed 99.3 4.9E-10 1.7E-14 121.3 29.5 228 833-1083 14-263 (297)
215 3hrp_A Uncharacterized protein 99.3 1.1E-09 3.7E-14 123.9 31.6 253 832-1091 131-408 (409)
216 3hrp_A Uncharacterized protein 99.3 6.9E-10 2.4E-14 125.5 29.4 239 345-614 131-408 (409)
217 2qe8_A Uncharacterized protein 99.3 1.9E-10 6.5E-15 127.4 23.9 270 345-651 17-312 (343)
218 2qe8_A Uncharacterized protein 99.3 1.5E-10 5E-15 128.4 21.8 273 765-1089 17-317 (343)
219 3iuj_A Prolyl endopeptidase; h 99.3 3.8E-10 1.3E-14 137.9 25.8 245 403-662 125-407 (693)
220 3iuj_A Prolyl endopeptidase; h 99.3 3.9E-10 1.3E-14 137.8 25.8 251 343-620 127-409 (693)
221 3g4e_A Regucalcin; six bladed 99.3 4.2E-09 1.4E-13 114.0 31.2 229 343-605 11-261 (297)
222 3dr2_A Exported gluconolactona 99.3 1.4E-09 4.8E-14 118.3 27.4 234 342-613 42-303 (305)
223 1mda_H Methylamine dehydrogena 99.2 2.2E-10 7.5E-15 125.6 20.2 197 834-1046 126-354 (368)
224 4a0p_A LRP6, LRP-6, low-densit 99.2 1.8E-05 6.2E-10 93.8 61.9 528 420-1096 8-552 (628)
225 2ghs_A AGR_C_1268P; regucalcin 99.2 7.2E-09 2.5E-13 113.7 30.3 225 346-606 50-292 (326)
226 4a0p_A LRP6, LRP-6, low-densit 99.2 2.9E-05 9.8E-10 92.1 63.7 525 365-1046 13-557 (628)
227 1kb0_A Quinohemoprotein alcoho 99.2 3.7E-09 1.3E-13 127.5 29.9 192 851-1047 189-516 (677)
228 2ghs_A AGR_C_1268P; regucalcin 99.2 8.7E-09 3E-13 113.0 30.0 224 834-1083 51-293 (326)
229 1yiq_A Quinohemoprotein alcoho 99.2 3.9E-09 1.3E-13 127.7 28.9 325 509-931 71-533 (689)
230 1xip_A Nucleoporin NUP159; bet 99.2 5.3E-10 1.8E-14 122.6 18.4 183 346-558 39-233 (388)
231 1mda_H Methylamine dehydrogena 99.2 8.5E-10 2.9E-14 121.0 20.0 266 358-668 33-353 (368)
232 3s94_A LRP-6, low-density lipo 99.2 1.5E-05 5.1E-10 94.4 57.6 524 426-1041 16-554 (619)
233 3dr2_A Exported gluconolactona 99.2 8.3E-09 2.8E-13 112.1 26.9 236 402-654 40-301 (305)
234 1yiq_A Quinohemoprotein alcoho 99.1 6.1E-09 2.1E-13 126.0 28.3 165 877-1046 239-513 (689)
235 1kb0_A Quinohemoprotein alcoho 99.1 6.4E-09 2.2E-13 125.5 27.5 323 509-932 78-536 (677)
236 3q7m_A Lipoprotein YFGL, BAMB; 99.1 3.9E-08 1.3E-12 110.6 31.7 147 467-625 55-216 (376)
237 1fwx_A Nitrous oxide reductase 99.1 1.6E-08 5.3E-13 114.8 24.8 274 548-949 99-434 (595)
238 2hz6_A Endoplasmic reticulum t 99.0 1.7E-11 5.8E-16 137.0 -0.4 229 842-1102 8-249 (369)
239 3ei3_A DNA damage-binding prot 99.0 0.00025 8.4E-09 89.8 65.2 609 348-1038 330-999 (1158)
240 3hxj_A Pyrrolo-quinoline quino 99.0 1.9E-08 6.4E-13 110.9 23.5 179 455-657 23-201 (330)
241 3ei3_A DNA damage-binding prot 99.0 0.00031 1.1E-08 88.9 64.6 570 408-1093 328-999 (1158)
242 2ece_A 462AA long hypothetical 99.0 3.6E-08 1.2E-12 107.8 24.1 236 351-604 88-399 (462)
243 2ece_A 462AA long hypothetical 99.0 6.1E-08 2.1E-12 106.0 25.8 237 774-1026 93-399 (462)
244 3q7m_A Lipoprotein YFGL, BAMB; 99.0 9.1E-08 3.1E-12 107.6 27.2 233 843-1102 103-346 (376)
245 3hxj_A Pyrrolo-quinoline quino 99.0 8.3E-08 2.9E-12 105.7 25.3 266 344-660 59-324 (330)
246 1fwx_A Nitrous oxide reductase 99.0 1.5E-08 5E-13 115.0 19.0 239 837-1097 90-435 (595)
247 2hz6_A Endoplasmic reticulum t 99.0 9.3E-10 3.2E-14 122.8 9.3 189 417-625 8-201 (369)
248 3s94_A LRP-6, low-density lipo 98.9 0.00029 1E-08 83.3 60.9 481 365-948 16-512 (619)
249 1npe_A Nidogen, entactin; glyc 98.9 1.4E-06 4.7E-11 92.3 29.5 202 833-1046 37-246 (267)
250 1npe_A Nidogen, entactin; glyc 98.8 4.9E-06 1.7E-10 88.0 33.0 222 407-642 36-263 (267)
251 1kv9_A Type II quinohemoprotei 98.8 1.1E-06 3.6E-11 106.1 28.6 166 877-1047 234-497 (668)
252 2iwa_A Glutamine cyclotransfer 98.8 6.1E-07 2.1E-11 92.4 21.8 202 833-1040 22-239 (266)
253 1kv9_A Type II quinohemoprotei 98.8 2.1E-06 7.1E-11 103.5 29.8 136 509-652 67-252 (668)
254 2iwa_A Glutamine cyclotransfer 98.8 9.6E-07 3.3E-11 91.0 22.6 222 862-1095 9-239 (266)
255 3ott_A Two-component system se 98.7 0.0018 6.2E-08 79.8 65.5 572 406-1093 21-626 (758)
256 2ad6_A Methanol dehydrogenase 98.7 4.5E-06 1.5E-10 98.3 29.4 147 896-1047 273-503 (571)
257 1w6s_A Methanol dehydrogenase 98.7 6.2E-06 2.1E-10 96.8 30.3 165 877-1047 245-512 (599)
258 2ad6_A Methanol dehydrogenase 98.6 2.7E-06 9.4E-11 100.1 25.4 83 894-982 443-525 (571)
259 3nol_A Glutamine cyclotransfer 98.6 1.6E-06 5.6E-11 87.8 19.7 186 834-1026 45-243 (262)
260 3nol_A Glutamine cyclotransfer 98.6 3.4E-06 1.1E-10 85.5 21.0 195 765-991 43-252 (262)
261 1w6s_A Methanol dehydrogenase 98.6 6.4E-06 2.2E-10 96.7 26.7 250 837-1103 111-513 (599)
262 1flg_A Protein (quinoprotein e 98.6 3.7E-05 1.3E-09 90.5 32.5 148 895-1047 291-525 (582)
263 3nok_A Glutaminyl cyclase; bet 98.6 3.1E-06 1.1E-10 85.6 19.5 184 833-1026 56-253 (268)
264 2fp8_A Strictosidine synthase; 98.6 2.2E-05 7.4E-10 85.7 28.0 238 833-1095 20-315 (322)
265 1flg_A Protein (quinoprotein e 98.5 4.9E-05 1.7E-09 89.5 32.1 82 894-981 465-546 (582)
266 3ott_A Two-component system se 98.5 0.0062 2.1E-07 74.9 61.4 527 344-1037 62-625 (758)
267 2xe4_A Oligopeptidase B; hydro 98.5 9.8E-06 3.4E-10 99.4 26.2 245 346-619 175-461 (751)
268 3nok_A Glutaminyl cyclase; bet 98.5 9.8E-06 3.3E-10 82.0 21.0 194 765-991 55-262 (268)
269 1k3i_A Galactose oxidase precu 98.5 1.1E-05 3.6E-10 97.7 25.6 276 349-649 190-530 (656)
270 2fp8_A Strictosidine synthase; 98.5 3.1E-05 1E-09 84.5 26.8 259 346-616 20-313 (322)
271 3mbr_X Glutamine cyclotransfer 98.5 1.4E-05 4.7E-10 80.4 21.2 188 831-1026 20-222 (243)
272 3mbr_X Glutamine cyclotransfer 98.5 2.8E-05 9.4E-10 78.2 22.8 198 763-992 19-232 (243)
273 3v64_C Agrin; beta propeller, 98.4 0.00013 4.4E-09 80.1 30.2 240 832-1096 34-278 (349)
274 2p4o_A Hypothetical protein; p 98.4 6.1E-05 2.1E-09 81.3 27.3 227 407-650 32-278 (306)
275 3v65_B Low-density lipoprotein 98.4 0.00011 3.7E-09 82.0 28.4 238 834-1096 79-321 (386)
276 2p4o_A Hypothetical protein; p 98.4 0.00016 5.5E-09 77.9 28.9 237 333-606 20-278 (306)
277 3v64_C Agrin; beta propeller, 98.4 0.00082 2.8E-08 73.6 34.5 248 344-624 33-283 (349)
278 2xbg_A YCF48-like protein; pho 98.3 0.0021 7.1E-08 69.8 36.5 281 342-657 33-319 (327)
279 3v65_B Low-density lipoprotein 98.3 0.00066 2.2E-08 75.6 31.9 246 346-624 78-326 (386)
280 1ijq_A LDL receptor, low-densi 98.3 0.00043 1.5E-08 74.7 29.5 229 845-1095 3-240 (316)
281 3tc9_A Hypothetical hydrolase; 98.2 0.00032 1.1E-08 79.3 27.9 250 833-1092 138-429 (430)
282 2xbg_A YCF48-like protein; pho 98.2 0.002 6.9E-08 69.8 33.2 195 832-1036 122-320 (327)
283 3qqz_A Putative uncharacterize 98.2 0.00088 3E-08 68.5 27.8 200 343-570 25-250 (255)
284 2xe4_A Oligopeptidase B; hydro 98.2 7.6E-05 2.6E-09 91.4 23.8 194 833-1036 175-398 (751)
285 1k3i_A Galactose oxidase precu 98.2 0.00016 5.3E-09 87.4 25.6 235 833-1082 244-530 (656)
286 3p5b_L Low density lipoprotein 98.2 0.00081 2.8E-08 75.2 29.6 232 844-1097 84-324 (400)
287 4hw6_A Hypothetical protein, I 98.2 0.00041 1.4E-08 78.4 27.2 252 833-1092 140-432 (433)
288 2xtc_A F-box-like/WD repeat-co 98.2 1.9E-06 6.5E-11 68.9 5.5 60 1-60 1-69 (90)
289 3qqz_A Putative uncharacterize 98.2 0.00057 2E-08 69.9 25.5 204 830-1037 25-252 (255)
290 1ijq_A LDL receptor, low-densi 98.2 0.0032 1.1E-07 67.8 32.5 230 421-661 4-239 (316)
291 3sov_A LRP-6, low-density lipo 98.1 0.0006 2.1E-08 73.4 24.2 228 845-1096 6-241 (318)
292 3amr_A 3-phytase; beta-propell 98.0 0.00052 1.8E-08 72.7 22.3 196 842-1046 39-272 (355)
293 3tc9_A Hypothetical hydrolase; 98.0 0.00053 1.8E-08 77.5 24.1 240 408-658 138-428 (430)
294 3sov_A LRP-6, low-density lipo 98.0 0.0056 1.9E-07 65.8 30.7 232 365-624 11-246 (318)
295 3p5b_L Low density lipoprotein 98.0 0.0075 2.6E-07 67.3 32.5 231 420-661 85-321 (400)
296 3kya_A Putative phosphatase; s 97.9 0.0049 1.7E-07 69.4 29.3 256 833-1095 140-477 (496)
297 4hw6_A Hypothetical protein, I 97.9 0.0023 8E-08 72.1 26.6 239 407-658 139-431 (433)
298 2xzh_A Clathrin heavy chain 1; 97.9 0.016 5.6E-07 59.8 29.7 239 350-620 72-336 (365)
299 3m0c_C LDL receptor, low-densi 97.8 0.018 6.3E-07 69.6 33.6 213 405-624 422-640 (791)
300 3m0c_C LDL receptor, low-densi 97.8 0.0074 2.5E-07 73.0 30.1 222 336-581 415-640 (791)
301 3amr_A 3-phytase; beta-propell 97.8 0.0041 1.4E-07 65.8 23.2 186 467-659 42-262 (355)
302 3kya_A Putative phosphatase; s 97.7 0.0066 2.3E-07 68.3 25.9 244 408-661 140-476 (496)
303 2xzh_A Clathrin heavy chain 1; 97.7 0.046 1.6E-06 56.6 28.9 234 834-1093 69-332 (365)
304 1n7d_A LDL receptor, low-densi 97.7 0.00026 8.8E-09 85.4 14.9 207 832-1046 406-622 (699)
305 2ism_A Putative oxidoreductase 97.7 0.011 3.7E-07 64.7 25.9 225 833-1081 32-333 (352)
306 1bpo_A Protein (clathrin); cla 97.7 0.052 1.8E-06 58.5 29.4 241 349-621 70-336 (494)
307 1n7d_A LDL receptor, low-densi 97.6 0.00098 3.3E-08 80.3 17.9 211 407-625 406-623 (699)
308 2p9w_A MAL S 1 allergenic prot 97.5 0.021 7.1E-07 60.0 24.3 205 832-1038 13-265 (334)
309 3a9g_A Putative uncharacterize 97.4 0.035 1.2E-06 60.5 26.2 224 832-1081 29-330 (354)
310 2p9w_A MAL S 1 allergenic prot 97.4 0.021 7.3E-07 59.9 21.9 164 347-527 15-215 (334)
311 1bpo_A Protein (clathrin); cla 97.3 0.28 9.5E-06 53.0 33.5 263 562-949 46-334 (494)
312 3sre_A PON1, serum paraoxonase 97.2 0.025 8.6E-07 60.9 20.6 203 833-1046 51-308 (355)
313 3a9g_A Putative uncharacterize 97.2 0.22 7.6E-06 54.1 28.6 230 344-603 28-329 (354)
314 2ism_A Putative oxidoreductase 97.1 0.057 1.9E-06 58.9 23.6 229 407-648 31-333 (352)
315 2g8s_A Glucose/sorbosone dehyd 97.1 0.06 2.1E-06 58.7 23.4 238 833-1091 19-350 (353)
316 3pbp_A Nucleoporin NUP82; beta 97.1 0.038 1.3E-06 59.7 20.0 110 837-948 26-160 (452)
317 3ii7_A Kelch-like protein 7; p 97.0 0.024 8.2E-07 60.7 19.3 233 844-1104 13-281 (306)
318 2vpj_A Kelch-like protein 12; 97.0 0.037 1.3E-06 59.0 20.4 235 842-1103 14-286 (301)
319 2xn4_A Kelch-like protein 2; s 97.0 0.063 2.1E-06 57.2 21.6 233 842-1102 15-283 (302)
320 3das_A Putative oxidoreductase 96.9 0.51 1.7E-05 50.5 27.6 231 832-1081 32-326 (347)
321 3sre_A PON1, serum paraoxonase 96.9 0.7 2.4E-05 49.6 31.7 200 407-615 50-297 (355)
322 2vpj_A Kelch-like protein 12; 96.7 0.13 4.4E-06 54.7 21.5 192 417-620 62-282 (301)
323 4asc_A Kelch repeat and BTB do 96.7 0.18 6.2E-06 53.9 22.7 225 850-1101 11-283 (315)
324 1cru_A Protein (soluble quinop 96.7 0.5 1.7E-05 53.2 26.7 103 833-935 28-163 (454)
325 2g8s_A Glucose/sorbosone dehyd 96.6 0.6 2.1E-05 50.6 26.4 235 345-602 18-339 (353)
326 1zgk_A Kelch-like ECH-associat 96.6 0.088 3E-06 56.2 19.0 238 839-1104 21-296 (308)
327 1xi4_A Clathrin heavy chain; a 96.5 0.16 5.6E-06 63.3 22.4 202 834-1046 68-297 (1630)
328 3ii7_A Kelch-like protein 7; p 96.5 0.23 8E-06 52.8 21.9 229 419-661 13-273 (306)
329 2uvk_A YJHT; unknown function, 96.4 0.15 5.1E-06 55.8 20.1 238 842-1105 19-352 (357)
330 2xn4_A Kelch-like protein 2; s 96.3 0.26 8.8E-06 52.3 20.9 230 418-661 16-277 (302)
331 1xi4_A Clathrin heavy chain; a 96.0 0.24 8.1E-06 61.9 20.0 241 349-621 70-336 (1630)
332 2be1_A Serine/threonine-protei 95.9 0.027 9.3E-07 60.0 10.4 203 886-1098 11-236 (339)
333 3sbq_A Nitrous-oxide reductase 95.9 1 3.5E-05 50.3 22.7 116 831-948 322-480 (638)
334 4asc_A Kelch repeat and BTB do 95.8 0.57 1.9E-05 50.0 20.4 194 838-1044 41-283 (315)
335 2woz_A Kelch repeat and BTB do 95.7 0.95 3.2E-05 48.3 22.0 223 852-1101 24-293 (318)
336 1tl2_A L10, protein (tachylect 95.7 0.085 2.9E-06 51.3 11.7 146 833-986 42-203 (236)
337 1zgk_A Kelch-like ECH-associat 95.7 0.62 2.1E-05 49.5 20.1 231 416-661 23-288 (308)
338 1uuj_A Platelet-activating fac 95.7 0.01 3.6E-07 47.2 4.2 54 5-58 10-65 (88)
339 3s25_A Hypothetical 7-bladed b 95.6 2.7 9.3E-05 44.1 25.3 182 349-575 57-257 (302)
340 3das_A Putative oxidoreductase 95.6 3.1 0.0001 44.4 27.3 113 343-471 30-157 (347)
341 3s25_A Hypothetical 7-bladed b 95.5 0.82 2.8E-05 48.1 19.7 201 459-693 21-238 (302)
342 1tl2_A L10, protein (tachylect 95.4 0.26 9E-06 47.9 13.9 146 873-1029 41-201 (236)
343 2woz_A Kelch repeat and BTB do 95.3 0.56 1.9E-05 50.1 18.4 194 838-1044 52-293 (318)
344 3pbp_A Nucleoporin NUP82; beta 95.2 0.56 1.9E-05 50.7 17.1 135 517-656 40-208 (452)
345 2be1_A Serine/threonine-protei 95.2 0.051 1.7E-06 57.9 9.1 196 845-1043 12-236 (339)
346 3sbq_A Nitrous-oxide reductase 94.7 1.7 5.7E-05 48.6 19.4 196 842-1039 141-409 (638)
347 2uvk_A YJHT; unknown function, 94.7 1.8 6.3E-05 46.9 20.6 198 842-1046 65-350 (357)
348 1cru_A Protein (soluble quinop 94.4 2.2 7.5E-05 47.9 20.6 108 873-982 27-162 (454)
349 3qhy_B Beta-lactamase inhibito 93.2 3.4 0.00012 42.9 17.9 222 833-1093 25-246 (282)
350 2nxp_A Transcription initiatio 92.9 0.32 1.1E-05 45.0 8.3 79 71-149 51-136 (156)
351 2wg3_C Hedgehog-interacting pr 92.7 15 0.00051 41.0 25.9 55 408-462 15-79 (463)
352 4hvt_A Ritya.17583.B, post-pro 92.7 18 0.00061 43.0 25.2 246 349-618 133-431 (711)
353 2j4b_A TAF5, transcription ini 92.4 0.13 4.5E-06 46.3 4.8 58 71-129 32-89 (138)
354 2wg3_C Hedgehog-interacting pr 91.2 22 0.00076 39.7 27.2 103 833-937 15-160 (463)
355 2zwa_A Leucine carboxyl methyl 91.1 5.7 0.00019 47.5 18.8 199 841-1042 396-639 (695)
356 3qhy_B Beta-lactamase inhibito 91.0 16 0.00054 37.7 20.1 183 833-1038 64-246 (282)
357 2j49_A Transcription initiatio 90.0 0.2 6.9E-06 45.6 3.6 55 71-126 34-88 (148)
358 3q6k_A 43.2 kDa salivary prote 89.0 2.6 8.8E-05 45.4 11.9 152 938-1093 124-306 (381)
359 3q6k_A 43.2 kDa salivary prote 88.9 28 0.00096 37.4 21.2 155 853-1038 124-306 (381)
360 3b7f_A Glycosyl hydrolase, BNR 88.4 32 0.0011 37.4 25.2 262 831-1101 54-378 (394)
361 4hvt_A Ritya.17583.B, post-pro 85.6 34 0.0012 40.6 20.1 241 411-659 133-429 (711)
362 3b7f_A Glycosyl hydrolase, BNR 78.5 79 0.0027 34.2 31.1 236 406-654 54-366 (394)
363 2zwa_A Leucine carboxyl methyl 78.3 28 0.00097 41.4 16.0 113 549-661 451-578 (695)
364 2zux_A YESW protein; beta-prop 76.2 1.1E+02 0.0036 34.5 27.4 179 449-640 176-424 (591)
365 2zuy_A YESX protein; beta-prop 72.8 1.3E+02 0.0045 34.0 26.2 68 573-640 355-428 (620)
366 3no0_A DNA gyrase subunit A; D 72.7 87 0.003 31.9 21.3 197 886-1093 36-246 (276)
367 1zi0_A DNA gyrase subunit A; b 71.0 1E+02 0.0035 32.0 27.5 192 416-616 1-226 (307)
368 3kci_A Probable E3 ubiquitin-p 70.4 1.2E+02 0.0042 32.6 27.8 208 874-1093 106-345 (389)
369 4gq2_M Nucleoporin NUP120; bet 69.6 53 0.0018 40.6 15.6 40 916-955 236-275 (950)
370 4d9s_A UVB-resistance protein 68.3 1.4E+02 0.0047 32.4 33.4 205 874-1092 122-356 (406)
371 3no0_A DNA gyrase subunit A; D 64.9 1.2E+02 0.0043 30.7 22.2 114 830-946 66-196 (276)
372 3uc1_A DNA gyrase subunit A; D 63.5 1.5E+02 0.0051 31.0 26.6 159 830-993 93-279 (327)
373 4gq2_M Nucleoporin NUP120; bet 62.9 32 0.0011 42.6 11.8 42 1007-1048 235-276 (950)
374 3uc1_A DNA gyrase subunit A; D 57.3 1.9E+02 0.0064 30.2 24.3 160 494-658 94-277 (327)
375 3f7f_A Nucleoporin NUP120; nuc 56.8 1.2E+02 0.0042 35.4 14.2 36 1010-1047 224-259 (729)
376 2d68_A FOP, FGFR1OP; alpha hel 55.3 11 0.00038 29.8 3.6 30 7-36 20-49 (82)
377 3zwu_A Alkaline phosphatase PH 52.7 21 0.00072 41.0 7.1 61 964-1026 476-549 (592)
378 4a9v_A PHOX; hydrolase, beta-p 51.5 26 0.0009 39.6 7.4 61 964-1026 476-549 (592)
379 3l6v_A GYRA, DNA gyrase subuni 49.9 2.6E+02 0.009 29.7 27.8 192 841-1040 5-267 (370)
380 3l6v_A GYRA, DNA gyrase subuni 48.9 2.7E+02 0.0093 29.6 28.3 149 415-572 4-179 (370)
381 1zi0_A DNA gyrase subunit A; b 47.1 2.6E+02 0.0088 28.8 27.0 240 842-1093 2-277 (307)
382 2cn3_A Xyloglucanase, beta-1,4 46.2 4.4E+02 0.015 31.2 21.5 259 833-1101 24-343 (737)
383 1suu_A DNA gyrase subunit A; t 44.8 2.8E+02 0.0096 28.6 27.3 194 841-1039 6-232 (312)
384 3kci_A Probable E3 ubiquitin-p 41.5 3.6E+02 0.012 28.8 29.4 197 833-1038 106-345 (389)
385 3mkr_A Coatomer subunit epsilo 33.9 1.9E+02 0.0065 29.4 10.5 85 6-101 65-157 (291)
386 4gco_A Protein STI-1; structur 33.1 1.1E+02 0.0038 26.3 7.3 81 14-101 22-108 (126)
387 2wpv_A GET4, UPF0363 protein Y 32.7 1E+02 0.0035 31.9 7.8 23 38-60 17-39 (312)
388 1wp5_A Topoisomerase IV; broke 32.7 4.4E+02 0.015 27.3 26.6 207 831-1038 38-277 (323)
389 4fhn_B Nucleoporin NUP120; pro 32.6 1.9E+02 0.0064 36.7 12.0 37 874-911 239-275 (1139)
390 3mez_A Mannose-specific lectin 31.3 1.9E+02 0.0065 24.3 8.2 56 918-991 21-76 (111)
391 4ga2_A E3 SUMO-protein ligase 30.5 2.3E+02 0.0079 25.0 9.4 93 21-121 13-111 (150)
392 3zwu_A Alkaline phosphatase PH 30.5 1.3E+02 0.0044 34.5 8.9 64 540-603 477-548 (592)
393 4gcn_A Protein STI-1; structur 30.3 1.1E+02 0.0037 26.4 6.8 100 15-116 18-123 (127)
394 4asv_A Small glutamine-rich te 29.5 32 0.0011 27.7 2.5 19 1-19 15-33 (92)
395 3lpz_A GET4 (YOR164C homolog); 29.5 1.3E+02 0.0044 31.5 7.9 23 38-60 16-41 (336)
396 2zux_A YESW protein; beta-prop 29.0 6.7E+02 0.023 28.3 27.9 186 453-659 327-531 (591)
397 4a9v_A PHOX; hydrolase, beta-p 27.5 2E+02 0.0067 32.6 9.4 65 540-604 477-549 (592)
398 3f7f_A Nucleoporin NUP120; nuc 25.4 2.2E+02 0.0074 33.3 9.6 37 587-625 223-259 (729)
399 1vk8_A Hypothetical protein TM 25.2 11 0.00036 31.8 -0.9 37 23-60 36-72 (106)
400 1kdl_A YOPD protein; yersinia, 25.0 41 0.0014 19.4 1.7 14 5-18 4-17 (26)
401 2lni_A Stress-induced-phosphop 24.9 3E+02 0.01 22.8 9.3 89 6-101 17-111 (133)
402 2cn3_A Xyloglucanase, beta-1,4 22.8 9.8E+02 0.033 28.1 45.9 105 452-557 23-151 (737)
403 3mkr_A Coatomer subunit epsilo 22.7 2E+02 0.007 29.2 8.3 103 8-118 103-209 (291)
404 3dzw_A Agglutinin; lectin, man 22.6 3.3E+02 0.011 22.6 10.6 57 918-992 20-76 (109)
405 4fhn_B Nucleoporin NUP120; pro 22.3 68 0.0023 40.7 5.2 41 1008-1048 238-278 (1139)
406 1wp5_A Topoisomerase IV; broke 21.8 6.7E+02 0.023 25.9 26.3 193 416-616 3-225 (323)
407 3qou_A Protein YBBN; thioredox 21.6 3.2E+02 0.011 27.6 9.5 104 10-120 122-230 (287)
408 1elr_A TPR2A-domain of HOP; HO 20.5 3.2E+02 0.011 22.4 8.2 94 9-102 8-107 (131)
409 2pl2_A Hypothetical conserved 20.5 4.2E+02 0.014 25.1 9.8 109 6-119 6-128 (217)
410 1elw_A TPR1-domain of HOP; HOP 20.4 3.3E+02 0.011 21.7 8.7 87 8-101 7-99 (118)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-68 Score=647.94 Aligned_cols=564 Identities=21% Similarity=0.348 Sum_probs=486.4
Q ss_pred eecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001190 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1128)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1128)
.-+|++.|+|++|||||+ +||+|+.|++|+|||. +++.+. .+.+|.+.|++++|+|||+
T Consensus 12 L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspdg~ 70 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPDGQ 70 (577)
T ss_dssp ECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTTSS
T ss_pred ECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCCCC
Confidence 346999999999999999 7899999999999995 566553 3889999999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEE
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~ 499 (1128)
+||+++.|++|+|||+. ++.+. .+.+|.+.|.+++|+||++ +|++++.|+.+++|+..+.......+|...|.+
T Consensus 71 ~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (577)
T 2ymu_A 71 TIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 144 (577)
T ss_dssp EEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCEEE
T ss_pred EEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccccceeeeccCCCCceee
Confidence 99999999999999964 45444 5889999999999999999 899999999999999777888888999999999
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
+.+++ ++..+++++.++.+++|+.. .........+...+.++.++|+++++++++ .++.|++||. +++.+..
T Consensus 145 ~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~v~~w~~-~~~~~~~ 216 (577)
T 2ymu_A 145 VAFSP--DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASAS----DDKTVKLWNR-NGQLLQT 216 (577)
T ss_dssp EEECT--TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEE----TTSEEEEECT-TSCEEEE
T ss_pred eeeec--CCccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEc----CCCEEEEEeC-CCcEEEE
Confidence 99976 56789999999999999864 345556677888999999999999999988 4899999995 6778888
Q ss_pred eccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 580 YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
+.+|.. .+.+++|+|++++|++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++.+++++.|+.|++|+..
T Consensus 217 ~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~ 292 (577)
T 2ymu_A 217 LTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292 (577)
T ss_dssp EECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC
Confidence 888877 8999999999999999999999999996 45666666644 4589999999999999999999999999853
Q ss_pred cCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCC
Q 001190 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPK 739 (1128)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 739 (1128)
.. ....
T Consensus 293 ~~--~~~~------------------------------------------------------------------------ 298 (577)
T 2ymu_A 293 GQ--LLQT------------------------------------------------------------------------ 298 (577)
T ss_dssp SC--EEEE------------------------------------------------------------------------
T ss_pred Cc--EEEE------------------------------------------------------------------------
Confidence 21 1100
Q ss_pred cceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCc
Q 001190 740 PWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 819 (1128)
Q Consensus 740 vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1128)
+ .+|...|.+++|+|++..+++++.||.+++|++....
T Consensus 299 -----------------~---~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~---------------------- 336 (577)
T 2ymu_A 299 -----------------L---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH---------------------- 336 (577)
T ss_dssp -----------------E---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE----------------------
T ss_pred -----------------E---ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----------------------
Confidence 1 2277889999999999999999999999999864211
Q ss_pred cccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 001190 820 LMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898 (1128)
Q Consensus 820 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~ 898 (1128)
+ ..+.+ |...+.+++|+|+|++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|+
T Consensus 337 ~--~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 337 L--QTLTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVK 410 (577)
T ss_dssp E--EEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEE
T ss_pred e--EEEeC--CCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEE
Confidence 0 01222 788999999999999999998 899999995 6788889999999999999999 999999999999999
Q ss_pred EEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE
Q 001190 899 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 978 (1128)
Q Consensus 899 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 978 (1128)
+||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||... +....+ ..|. ..+.+++|+||+++|
T Consensus 411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~-----~~~~-~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTL-----TGHS-SSVRGVAFSPDGQTI 482 (577)
T ss_dssp EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEE-----ECCS-SCEEEEEECTTSCEE
T ss_pred EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEE-----cCCC-CCEEEEEEcCCCCEE
Confidence 9995 5778889999999999999999999999999999999999754 332222 2333 789999999999999
Q ss_pred EEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccC
Q 001190 979 LVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1057 (1128)
Q Consensus 979 ~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1057 (1128)
++++ |+.|++||. +++.+..+..| ...|++++|+|||++|++++.||.|+|||. +++.+..+.
T Consensus 483 as~~~d~~i~iw~~-~~~~~~~~~~h---~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~----------- 546 (577)
T 2ymu_A 483 ASASDDKTVKLWNR-NGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT----------- 546 (577)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-----------
T ss_pred EEEeCCCEEEEEcC-CCCEEEEEeCC---CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-----------
Confidence 9975 899999995 57777777654 889999999999999999999999999996 678887777
Q ss_pred CCCccceEEEEEecCCCCEEEEEECCCcEEEEc
Q 001190 1058 GSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1058 ~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd 1090 (1128)
+|...|.+++|+| |+++|++++.||+|++||
T Consensus 547 -~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 -GHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -CCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred -CCCCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 5677889999999 699999999999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.9e-66 Score=624.19 Aligned_cols=575 Identities=13% Similarity=0.165 Sum_probs=460.2
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+.+.+.+++|||||+ +||+++ ++.|+|||+.+++... .+.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 567889999999999 678876 6799999998776543 3889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC----CeEEEEecCCCeEEEecCCCCCeE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d----~~i~vWd~~g~~~~~~~~h~~~v~ 498 (1128)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+|||+ +|++++.+ +.|++|| .+..+..+.+|...|+
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee-CCCCcceecCCCCCce
Confidence 99999999999998765432 225779999999999999999 67777755 4788888 5667788999999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceee
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1128)
+++|+|+. ...|++++.|++|++||....+....+..|...|.+++|+|+|++|++++ .|+.|++||+.+++.+.
T Consensus 152 ~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s----~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG----GDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEE
T ss_pred EEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE----CCCcEEEEECCCCcEee
Confidence 99998743 13699999999999999988877788899999999999999999999998 49999999999999988
Q ss_pred Eec-------cccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC-CCCcceEEEcCCCCEEEEEEcC
Q 001190 579 TYA-------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 579 ~~~-------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
.+. +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..... ...+..+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred eeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCC
Confidence 884 5665 899999999999999999999999999999998888764321 112344555 77899999999
Q ss_pred CcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcc
Q 001190 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1128)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (1128)
+.+++|+..++. ....
T Consensus 304 ~~i~~~~~~~~~-~~~~--------------------------------------------------------------- 319 (611)
T 1nr0_A 304 GFINFVNPELGS-IDQV--------------------------------------------------------------- 319 (611)
T ss_dssp CCEEEEETTTTE-EEEE---------------------------------------------------------------
T ss_pred CcEEEEeCCCCC-cceE---------------------------------------------------------------
Confidence 999999975541 1100
Q ss_pred cCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeecc
Q 001190 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1128)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (1128)
+ .+|...|.+++|+|+|++|++++.|+.|++||+...
T Consensus 320 --------------------------~---~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-------------- 356 (611)
T 1nr0_A 320 --------------------------R---YGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-------------- 356 (611)
T ss_dssp --------------------------E---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------
T ss_pred --------------------------E---cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC--------------
Confidence 1 238889999999999999999999999999986532
Q ss_pred ceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEE---eeCCCCCeeEEEEcCCCCCE
Q 001190 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTT---FMSPPPASTFLAFHPQDNNI 887 (1128)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~---~~~~~~~v~~l~~s~~d~~~ 887 (1128)
........ .|...|.+++|++++.++..+.|+.+++|++.++..... .........+++|+| ++++
T Consensus 357 --------~~~~~~~~--~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~ 425 (611)
T 1nr0_A 357 --------ISNRVFPD--VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDI 425 (611)
T ss_dssp --------CEEECSSC--SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSC
T ss_pred --------ceeeeccc--CCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcE
Confidence 11111112 388899999999887555444499999999876543210 011234567899999 8877
Q ss_pred EEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCcc
Q 001190 888 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDT 967 (1128)
Q Consensus 888 lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 967 (1128)
++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++..... .. ..|. ..+.
T Consensus 426 ~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~---~~-~~h~-~~v~ 495 (611)
T 1nr0_A 426 AVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV---KT-IVHP-AEIT 495 (611)
T ss_dssp EEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE---EE-EECS-SCEE
T ss_pred EEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee---ec-cCCC-CceE
Confidence 7776 467899998 344 44554 888999999999999999999999999999987643211 11 1232 7899
Q ss_pred EEEEcCCCCEEEEEe-cCeEEEEecCC-cccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEE-E
Q 001190 968 RVQFNADQVRMLVVH-ETQLAIYDASK-MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC-Y 1044 (1128)
Q Consensus 968 ~v~~s~d~~~l~~~~-d~~i~v~d~~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~-~ 1044 (1128)
+++|+|||++|++++ |+.|++|++.+ ++.+.. .....|...|.+++|+|||++|++|+.|++|+|||+.++.... .
T Consensus 496 ~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~-~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~ 574 (611)
T 1nr0_A 496 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT-NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 574 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC-CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee-eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccch
Confidence 999999999999976 99999999987 544332 1112358999999999999999999999999999999876321 2
Q ss_pred eCCCCCCCCcccCCCC-ccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1045 IAPSTYLSPSVLNGSQ-TVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1045 ~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
.. .+| ...+.+++|+| ++. |++++.||+|++|++.
T Consensus 575 ~~-----------~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 575 IK-----------GAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ET-----------TSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred hh-----------ccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 22 245 56789999999 566 9999999999999973
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-62 Score=596.64 Aligned_cols=547 Identities=16% Similarity=0.219 Sum_probs=443.1
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 406 (1128)
+|++.... ......+|.+.|++++|||||+ +||+|+.|++|+|||+.+++... ...+.+|.
T Consensus 43 l~~~~~~~-~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~-----------------~~~~~~~~ 103 (611)
T 1nr0_A 43 TVPVGSLT-DTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHIL-----------------KTTIPVFS 103 (611)
T ss_dssp EEETTCSS-CCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCE-----------------EEEEECSS
T ss_pred EecCCCcc-cCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCccee-----------------eEeecccC
Confidence 77775422 2233346999999999999999 78999999999999997655331 12367899
Q ss_pred cceEEEEEccCCCEEEEEeCC----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-
Q 001190 407 ISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd- 481 (1128)
+.|.+++|+|||++||+++.+ +.|++|| +++... .+.+|.+.|++++|+|++.. .|++|+.|++|++||
T Consensus 104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEG 177 (611)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEET
T ss_pred CceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEEC
Confidence 999999999999999999865 3677777 455444 57899999999999999874 599999999999999
Q ss_pred cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-------CCCCeEEEEEEcCCCCeEE
Q 001190 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 482 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-------~~~~~i~~~~~s~~g~~l~ 554 (1128)
.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||+.+++....+. .|...|.+++|+|+|++|+
T Consensus 178 ~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 178 PPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp TTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred CCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE
Confidence 88888999999999999999977 67899999999999999998887776663 6888999999999999999
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCC--ceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCc
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
+++. |+.|++||+.+++.+..+..+... ....+.| ++..+++++.||.+++|+..+++....+.. |...|
T Consensus 256 s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g--h~~~v 327 (611)
T 1nr0_A 256 SASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYG--HNKAI 327 (611)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECC--CSSCE
T ss_pred EEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcC--CCCCE
Confidence 9984 999999999999998888754321 2333444 678999999999999999999987776664 45589
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (1128)
.+++|+|++++|++++.|++|++||+.++.. ...+
T Consensus 328 ~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~-~~~~-------------------------------------------- 362 (611)
T 1nr0_A 328 TALSSSADGKTLFSADAEGHINSWDISTGIS-NRVF-------------------------------------------- 362 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCE-EECS--------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eeec--------------------------------------------
Confidence 9999999999999999999999999876521 1000
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeee
Q 001190 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1128)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~ 792 (1128)
..+|...|.+++|++++ .+++++.|+.+++|+
T Consensus 363 -----------------------------------------------~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~ 394 (611)
T 1nr0_A 363 -----------------------------------------------PDVHATMITGIKTTSKG-DLFTVSWDDHLKVVP 394 (611)
T ss_dssp -----------------------------------------------SCSCSSCEEEEEECTTS-CEEEEETTTEEEEEC
T ss_pred -----------------------------------------------ccCCcceEEEEEECCCC-cEEEEEcCCceEEee
Confidence 01277789999999776 588999999999998
Q ss_pred ccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCC
Q 001190 793 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP 872 (1128)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~ 872 (1128)
+......... .... ........++|+|||+.++++.++.+++|+ .++ +..+. |.
T Consensus 395 ~~~~~~~~~~-----------------~~~~-----~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~ 448 (611)
T 1nr0_A 395 AGGSGVDSSK-----------------AVAN-----KLSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-IS 448 (611)
T ss_dssp SSSSSSCTTS-----------------CCEE-----ECSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CS
T ss_pred cCCccccccc-----------------eeee-----ecCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cC
Confidence 7543211000 0000 033456789999999999888899999999 344 45554 78
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee--eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC-Ccc
Q 001190 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-WEK 949 (1128)
Q Consensus 873 ~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~-~~~ 949 (1128)
..+.+++|+| |+++||+|+.|++|++||+.++.. +.. .+|...|++++|+|||++|++++.|++|++||+.+ ++.
T Consensus 449 ~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 449 YNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp SCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred CCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCce
Confidence 8899999999 999999999999999999987653 334 68999999999999999999999999999999987 433
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccc--cccccCCCC-CCCeEEEEEeeCCCEEEEE
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERI--RQWTPQDAL-SAPISCAVYSCNSQLVFAT 1025 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~--~~~~~~~~h-~~~v~~l~~s~dg~~l~t~ 1025 (1128)
... .....|. ..|.+++|+|||++|++++ |+.|++|++.++... ..+ .+| ...|.+++|+||++ |+++
T Consensus 527 ~~~---~~~~~H~-~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~---~~h~~~~v~~v~fs~d~~-l~s~ 598 (611)
T 1nr0_A 527 AHT---NSWTFHT-AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK---GAHAMSSVNSVIWLNETT-IVSA 598 (611)
T ss_dssp SCC---CCCCCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET---TSSTTSCEEEEEEEETTE-EEEE
T ss_pred eee---eeeeecc-cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh---ccCcccCeeEEEEcCCCE-EEEe
Confidence 211 0112233 7899999999999999976 999999999876532 232 245 78999999999999 9999
Q ss_pred ecCCcEEEEecC
Q 001190 1026 FCDGNIGVFDAD 1037 (1128)
Q Consensus 1026 ~~dg~i~vwd~~ 1037 (1128)
+.|++|++|++.
T Consensus 599 ~~D~~i~lW~~~ 610 (611)
T 1nr0_A 599 GQDSNIKFWNVP 610 (611)
T ss_dssp ETTSCEEEEECC
T ss_pred cCCCCEEEEecc
Confidence 999999999973
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-63 Score=658.98 Aligned_cols=618 Identities=14% Similarity=0.182 Sum_probs=509.0
Q ss_pred EeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
...+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCC
Confidence 3446999999999999999 789999999999999999987653 77899999999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCe
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v 497 (1128)
++||+|+.||.|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++|| .+++++..+.+|.+.|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999998766 577999999999999965544899999999999999 8999999999999999
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC-------------CCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------------~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
++++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++ ++
T Consensus 747 ~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~ 819 (1249)
T 3sfz_A 747 NHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KN 819 (1249)
T ss_dssp EEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TT
T ss_pred EEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CC
Confidence 9999977 6689999999999999999887665544322 23678899999999999986 67
Q ss_pred eEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEE
Q 001190 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 644 (1128)
.+.+||..++..+..+...+...+.+++|+|++..+++++.||.|++||+.++..+..+..+ ...|.+++|+|+++++
T Consensus 820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSF 897 (1249)
T ss_dssp EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEE
T ss_pred cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCCCCEE
Confidence 89999999999988887444458999999999999999999999999999999998888755 4589999999999999
Q ss_pred EEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCC
Q 001190 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS 724 (1128)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1128)
++++.||.|++|++.+........ ......+.+.+++..++
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~------------------------------- 938 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIV--------LKQEIDVVFQENETMVL------------------------------- 938 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSS--------EEEEEEEEEETTEEEEE-------------------------------
T ss_pred EEEeCCCeEEEEEccccceeeeec--------ccceeeEEEcCCCcEEE-------------------------------
Confidence 999999999999987542111100 00111223333332221
Q ss_pred CCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCce
Q 001190 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA 804 (1128)
Q Consensus 725 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~ 804 (1128)
..+..+.+.++... ...... .+...+.+++++|++.++++++.+|.+++|++...
T Consensus 939 ------~~~~~~~~~~~~~~----~~~~~~-------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~-------- 993 (1249)
T 3sfz_A 939 ------AVDNIRGLQLIAGK----TGQIDY-------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN-------- 993 (1249)
T ss_dssp ------EEESSSSEEEEEES----SCCEEE-------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT--------
T ss_pred ------EecCCcceEEEecC----cceEEE-------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC--------
Confidence 11111222222211 111111 14567999999999999999999999999986532
Q ss_pred eeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCC
Q 001190 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 883 (1128)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~ 883 (1128)
.... .+.+ |...|.+++|+|||+++++++ ||.|++||+.+++... +..|...|.+++|++
T Consensus 994 --------------~~~~-~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~- 1054 (1249)
T 3sfz_A 994 --------------RVFS-SGVG--HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ- 1054 (1249)
T ss_dssp --------------SCEE-ECCC--CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-
T ss_pred --------------ceee-eccc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-
Confidence 1111 1222 888999999999999999998 8999999999988764 557999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCC
Q 001190 884 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP 963 (1128)
Q Consensus 884 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 963 (1128)
++ .+++++.||.|++||+.+++....+.+|.+.|++++|+|++++|++++.|++|++||+.+++....+ .+|.
T Consensus 1055 ~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l-----~~h~- 1127 (1249)
T 3sfz_A 1055 DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-----KGHN- 1127 (1249)
T ss_dssp SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC-----CCCS-
T ss_pred CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee-----ccCC-
Confidence 65 5678999999999999999999999999999999999999999999999999999999998765443 2333
Q ss_pred CCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccccccc------CCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEec
Q 001190 964 TGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTP------QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 964 ~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~------~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
..+.+++|+|||+++++++ |+.|++||+.+++.+..+.. ...|...|++++|+|||++|++++ |.|++||+
T Consensus 1128 ~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~ 1205 (1249)
T 3sfz_A 1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNV 1205 (1249)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCS
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEEC
Confidence 7899999999999999976 89999999999988776521 134588999999999999999885 89999999
Q ss_pred CCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1037 DTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
.+++.+..+. .|...+.+++|+| ++.+|++++.||.|++|++.+
T Consensus 1206 ~~g~~~~~~~------------~~~~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1206 ATGDSSQTFY------------TNGTNLKKIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp SSCBCCCCCC------------CSSCCCCCCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred CCCceeeeee------------ccCCcccEEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 9998866655 4455668899999 689999999999999999753
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-61 Score=587.27 Aligned_cols=533 Identities=21% Similarity=0.366 Sum_probs=456.5
Q ss_pred cccCCCCCcceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCC
Q 001190 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1128)
+|+. ..++..++. |...|++++|||||+ +||+|+.|++|+|||+ +++.+. .+.+|
T Consensus 42 iWd~---~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~-~~~~~~-------------------~~~~~ 97 (577)
T 2ymu_A 42 LWNR---NGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQ-------------------TLTGH 97 (577)
T ss_dssp EECT---TSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET-TSCEEE-------------------EECCC
T ss_pred EEEC---CCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEE-------------------EEECC
Confidence 7763 445555555 999999999999999 7899999999999996 455543 27889
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCC
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~ 485 (1128)
.+.|.+++|+|||++|++++.|+.+++|+....... ...+|...|..+.|+|++. .+++++.++.+++|+..+.
T Consensus 98 ~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 171 (577)
T 2ymu_A 98 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNRNGQ 171 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE----EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECTTSC
T ss_pred CCCEEEEEECCCCCEEEEEcCCCceeecccccceee----eccCCCCceeeeeeecCCc--cceecccccceecccccee
Confidence 999999999999999999999999999998764322 4678999999999999999 7899999999999997788
Q ss_pred eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCce
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 565 (1128)
.......|...|.++++++ ++.++++++.||.|++||. ..+....+..+...|.+++|+|++++|++++ .++.
T Consensus 172 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----~d~~ 244 (577)
T 2ymu_A 172 LLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS----DDKT 244 (577)
T ss_dssp EEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE----TTSC
T ss_pred eeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEe----CCCE
Confidence 8888899999999999976 6689999999999999996 4566677888999999999999999999988 4899
Q ss_pred EEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEE
Q 001190 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1128)
Q Consensus 566 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 645 (1128)
|++||. +++.+..+.+|.. .+.+++|+|+++.+++++.|+.|++||. +++.+..+.. +...|.+++|+|++++++
T Consensus 245 i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~--h~~~v~~~~~~~~~~~l~ 319 (577)
T 2ymu_A 245 VKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVWGVAFSPDGQTIA 319 (577)
T ss_dssp EEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECC--CSSCEEEEEECTTSSEEE
T ss_pred EEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEec--CCCCeEEEEECCCCCEEE
Confidence 999995 5678888888876 8999999999999999999999999996 4566666654 445899999999999999
Q ss_pred EEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCC
Q 001190 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1128)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1128)
+++.|+.|++|+..... ..
T Consensus 320 t~~~d~~i~~w~~~~~~--~~----------------------------------------------------------- 338 (577)
T 2ymu_A 320 SASDDKTVKLWNRNGQH--LQ----------------------------------------------------------- 338 (577)
T ss_dssp EEETTSCEEEEETTSCE--EE-----------------------------------------------------------
T ss_pred EEeCCCeEEEEeCCCCe--eE-----------------------------------------------------------
Confidence 99999999999964320 00
Q ss_pred CCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCcee
Q 001190 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (1128)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (1128)
.+ .+|...+.+++|+|+|+++++++.||.+++|+...
T Consensus 339 ------------------------------~~---~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~---------- 375 (577)
T 2ymu_A 339 ------------------------------TL---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---------- 375 (577)
T ss_dssp ------------------------------EE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC----------
T ss_pred ------------------------------EE---eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC----------
Confidence 01 12777899999999999999999999999997431
Q ss_pred eeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCC
Q 001190 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (1128)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d 884 (1128)
..+. .+.+ |...|++++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| +
T Consensus 376 -------------~~~~-~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d 437 (577)
T 2ymu_A 376 -------------QLLQ-TLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-D 437 (577)
T ss_dssp -------------CEEE-EEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-T
T ss_pred -------------CEEE-EecC--CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-C
Confidence 1111 1222 888999999999999999998 899999995 6788889999999999999999 9
Q ss_pred CCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCC
Q 001190 885 NNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPT 964 (1128)
Q Consensus 885 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 964 (1128)
+++|++++.|++|++||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||. +++....+ .+|. .
T Consensus 438 ~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~-----~~h~-~ 509 (577)
T 2ymu_A 438 DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-----TGHS-S 509 (577)
T ss_dssp SSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE-----ECCS-S
T ss_pred CCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE-----eCCC-C
Confidence 999999999999999996 56778889999999999999999999999999999999996 44443333 2333 7
Q ss_pred CccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEe
Q 001190 965 GDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 965 ~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
.+.+++|+|||++|++++ |+.|++||. +++.+..+..| ...|++++|+|||++|++++.|++|++||
T Consensus 510 ~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h---~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 510 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 899999999999999875 899999996 56777766654 89999999999999999999999999997
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.5e-59 Score=573.36 Aligned_cols=558 Identities=12% Similarity=0.203 Sum_probs=476.5
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCC----ceecccccccccccccCccccceeccCCCcc-eEEEEEcc
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR----DRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSP 416 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp 416 (1128)
.|.+.|.+++|||||+ +||+|+ ++.|+|||+.++ +... .+.+|... |++++|+|
T Consensus 16 ~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 4888999999999999 677776 889999999987 4433 38889999 99999999
Q ss_pred --CCCEEEEEeCCCeEEEEEccCCC-----cceeceeecccccceeEEEEecCCCeEEEEEecCC----CeEEEEecCCC
Q 001190 417 --DGNYVGVAFTKHLIQLYSYAGSN-----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGR 485 (1128)
Q Consensus 417 --dg~~las~~~d~~i~vwd~~~~~-----~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d----~~i~vWd~~g~ 485 (1128)
+|++||+|+.||.|++||+.++. .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE-CCC
Confidence 99999999999999999998651 1122335778999999999999999 78888877 6899999 778
Q ss_pred eEEEecCCCCCeEEEeccCCCCcc-EEEEEeccCcEEEEecCCCCceeeecCCCC---eEEEEEEcCC-CCeEEEeeecc
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSAD-GSRLFSCGTSK 560 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---~i~~~~~s~~-g~~l~~~~~~~ 560 (1128)
.+..+.+|...|.+++|+++ +. ++++++.|+.|++||+...+....+..|.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--
T ss_pred cceeeecCCccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC--
Confidence 89999999999999999874 44 899999999999999998888888888888 9999999999 999999884
Q ss_pred CCCceEEEEeCCCCceeeEe-c---cccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC--CCCcce
Q 001190 561 DGDSFLVEWNESEGTIKRTY-A---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPR 634 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~ 634 (1128)
++.|++||+.+++.+..+ . .|.. .+.+++|+ ++.+|++++.||.|++||+.+++.+..+..+.. ...+.+
T Consensus 228 --dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 303 (615)
T 1pgu_A 228 --DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303 (615)
T ss_dssp --TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEE
T ss_pred --CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeE
Confidence 899999999999999998 5 5655 89999999 999999999999999999999999888876521 235667
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCccc
Q 001190 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1128)
+.|+ ++.++++++.||.|++||+.++ .....+.+ +..+|.+++| |+ +
T Consensus 304 ~~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~-----~~~~v~~~~~-~~---l---------------------- 350 (615)
T 1pgu_A 304 VVAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISG-----HNKGITALTV-NP---L---------------------- 350 (615)
T ss_dssp EEEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECC-----CSSCEEEEET-TT---T----------------------
T ss_pred EEeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeC-----CCCCEEEEEe-cC---c----------------------
Confidence 7775 8899999999999999999875 34444443 3456777877 65 2
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeecc
Q 001190 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 794 (1128)
Q Consensus 715 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~ 794 (1128)
++++.|+.+++|++. .+. .+|...|.+++| +++..+++++.||.+++|++.
T Consensus 351 ---------------~~~~~dg~i~~w~~~---------~~~----~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~ 401 (615)
T 1pgu_A 351 ---------------ISGSYDGRIMEWSSS---------SMH----QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGIT 401 (615)
T ss_dssp ---------------EEEETTSCEEETTTT---------EEE----CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEE
T ss_pred ---------------EEECCCCeEEEEEch---------hhc----CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcc
Confidence 477888999999976 112 348999999999 778889999999999999865
Q ss_pred ccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCC
Q 001190 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA 874 (1128)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~ 874 (1128)
... ....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...
T Consensus 402 ~~~--------------------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 448 (615)
T 1pgu_A 402 KHE--------------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSP 448 (615)
T ss_dssp EEE--------------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred cCc--------------------------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCC
Confidence 321 1225789999999999999888999999999999988887 8889
Q ss_pred eeEEEEcCCCCCEEEEEeC-CCcEEEEecccceee-ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccce
Q 001190 875 STFLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVK-SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 952 (1128)
Q Consensus 875 v~~l~~s~~d~~~lasg~~-dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~ 952 (1128)
+.+++|+ +++|++++. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++....
T Consensus 449 ~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 525 (615)
T 1pgu_A 449 GSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS 525 (615)
T ss_dssp EEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred ceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeE
Confidence 9999998 679999999 999999999998776 78889999999999999999999999999999999999875433
Q ss_pred eEEeecCCCCCCCccEEEEcC----------CCCEEEEEe-cCeEEEEecCCc-ccccccccCCCCCCCeEEEEEeeCCC
Q 001190 953 VTIHIPAGKTPTGDTRVQFNA----------DQVRMLVVH-ETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQ 1020 (1128)
Q Consensus 953 ~~~~~~~~~~~~~v~~v~~s~----------d~~~l~~~~-d~~i~v~d~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~ 1020 (1128)
........+.+++|+| ++++|++++ |+.|++||+.++ +.+..+..| ...|.+++|+||++
T Consensus 526 -----~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 526 -----RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH---KDGVNNLLWETPST 597 (615)
T ss_dssp -----CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS---TTCEEEEEEEETTE
T ss_pred -----eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC---ccceEEEEEcCCCC
Confidence 2331237899999999 999999976 899999999988 566665544 89999999999999
Q ss_pred EEEEEecCCcEEEEecCC
Q 001190 1021 LVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 1021 ~l~t~~~dg~i~vwd~~~ 1038 (1128)
|++++.||.|++|++++
T Consensus 598 -l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 598 -LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -EEEEETTSCEEEEEEC-
T ss_pred -eEEecCCceEEEEeeec
Confidence 99999999999999975
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-57 Score=569.07 Aligned_cols=602 Identities=10% Similarity=0.092 Sum_probs=450.3
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
.....+|.+.|+|++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 10 ~~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp 68 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK 68 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET
T ss_pred cccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC
Confidence 345568999999999999998 88999999999999987765432 234788999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE--------
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-------- 487 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~-------- 487 (1128)
|++|++++.|++|+|||+.+++.+.. +. |.+.|++++|+|+++ +|++|+.||+|++|| .+++..
T Consensus 69 -g~~L~S~s~D~~v~lWd~~~~~~~~~---~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 69 -GIYLVVINAKDTVYVLSLYSQKVLTT---VF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp -TTEEEEEETTCEEEEEETTTCSEEEE---EE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred -CCEEEEEECcCeEEEEECCCCcEEEE---Ec-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccc
Confidence 88999999999999999999887663 43 778999999999999 899999999999999 555543
Q ss_pred ---EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC------------------CCeEEEEEE
Q 001190 488 ---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------------GHWCTTMLY 546 (1128)
Q Consensus 488 ---~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------------------~~~i~~~~~ 546 (1128)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||++.......+..+ ...|.+++|
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred ccccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence 234679999999999874 34689999999999 9999988777666654 357999999
Q ss_pred cCCCCeEEEeeeccCCCceEEEEeCCCCceeeE--ec---cc------------cCCceeEEEEeC----CC-CEEEEEE
Q 001190 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT--YA---GF------------RKKSNGVVQFDT----TQ-NHFLAVG 604 (1128)
Q Consensus 547 s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~~---~~------------~~~~v~~~~~~~----~~-~~l~~~s 604 (1128)
+|+|++|++++ .|+.|++||+.+++++.. +. .| +...|..++|++ ++ ..+++|+
T Consensus 220 spdg~~lasgs----~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 220 HPNSLHIITIH----EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp CTTSSEEEEEE----TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred cCCCCEEEEEE----CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 99999999998 499999999999987654 21 22 123688999964 43 4566676
Q ss_pred CC-----CcEEEEECC------------------CCeeeEEEecCCCCCCcceEEEcC----------CCCEEEEEEcCC
Q 001190 605 ED-----SQIKFWDMD------------------NVNILTSTDAEGGLPNLPRLRFSK----------EGNLLAVTTADN 651 (1128)
Q Consensus 605 ~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~sp----------~~~~l~~~~~dg 651 (1128)
.| ..+.+|++. +.+....+.. .+...|..+.+.+ +...+++++.||
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg 374 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG 374 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTS
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec-CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCC
Confidence 65 378899842 1222333322 1223577777654 345789999999
Q ss_pred cEEEEEcccCccccccccCC-ccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcc
Q 001190 652 GFKILANAIGLRSLRAVENP-PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1128)
Q Consensus 652 ~i~iw~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (1128)
.|++|++.++.........+ ....+...|.+++|++....+....
T Consensus 375 ~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~---------------------------------- 420 (902)
T 2oaj_A 375 EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA---------------------------------- 420 (902)
T ss_dssp CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH----------------------------------
T ss_pred cEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH----------------------------------
Confidence 99999997763332221111 1223345677788776543321100
Q ss_pred cCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeecc
Q 001190 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1128)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (1128)
.+.++. ..| .+ .+|...+..++|+|+++.+++++.|++|++||+........
T Consensus 421 -~~~~~~-~~~--------------~l---~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~--------- 472 (902)
T 2oaj_A 421 -LSAAQN-KDY--------------LL---KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN--------- 472 (902)
T ss_dssp -HHTTBC-CCC--------------SC---CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT---------
T ss_pred -HhcccC-CCC--------------cc---cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC---------
Confidence 000000 000 11 34777788899999999999999999999999865421000
Q ss_pred ceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCc---------------------------
Q 001190 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF--------------------------- 862 (1128)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~--------------------------- 862 (1128)
..+... +...+ +..|...|.+++|+|||++||+|+ ||+|++||+.++
T Consensus 473 ~~~~~~----l~~~~-~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (902)
T 2oaj_A 473 ASFEVN----LSRTL-NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTN 547 (902)
T ss_dssp BCEEEE----HHHHT-TCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSS
T ss_pred ceEEee----chhhc-CCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCc
Confidence 000000 00000 113889999999999999999998 899999999866
Q ss_pred ------------------eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee-----ccc-ccccCe
Q 001190 863 ------------------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-----KLK-GHQKRI 918 (1128)
Q Consensus 863 ------------------~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h~~~V 918 (1128)
+++..+.+|.+.|++++||| || +||+|+.|++|+|||+.++..+. .+. +|.+.|
T Consensus 548 ~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V 625 (902)
T 2oaj_A 548 GVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACV 625 (902)
T ss_dssp CSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCE
T ss_pred cccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccce
Confidence 24677889999999999999 88 99999999999999998876543 454 899999
Q ss_pred eEEEEc-----CCC---CEEEEEcCCCcEEEEEC---CCCcccceeEEeecCCCCCCCccEEE-Ec--------------
Q 001190 919 TGLAFS-----TSL---NILVSSGADAQLCVWSI---DTWEKRKSVTIHIPAGKTPTGDTRVQ-FN-------------- 972 (1128)
Q Consensus 919 ~~l~~s-----~d~---~~l~s~~~Dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~v~-~s-------------- 972 (1128)
++|+|+ ||| ++|++++.|++|++||+ .+|+....+.-+....+. ..+..++ |+
T Consensus 626 ~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~a~~~~~ 704 (902)
T 2oaj_A 626 TCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSK-GPIHKIDAFSKETKSSCLATIPKM 704 (902)
T ss_dssp EEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSS-CCCCEEEEEETTTCCBCBCBHHHH
T ss_pred EEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCC-CceEEEEeEecCCCCcccCCHHHH
Confidence 999999 886 79999999999999999 777766655554433222 5555565 65
Q ss_pred --------CCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEE---E------EeeCCCEEEEEecCCcEEEEe
Q 001190 973 --------ADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCA---V------YSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 973 --------~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l---~------~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
+++.. +++++..++||++.++++.+....+ ...+.++ . |+++|..|++++.||.|++|+
T Consensus 705 ~~l~~~~~~~~~~-l~~~~~~ir~~~~~~~k~~~k~~~~---~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s 780 (902)
T 2oaj_A 705 QNLSKGLCIPGIV-LITGFDDIRLITLGKSKSTHKGFKY---PLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFT 780 (902)
T ss_dssp HGGGGTCCCCEEE-EEECSSEEEEECTTCCCEEEEECSS---CEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEE
T ss_pred hccCCCCCCCeEE-EEEeccceEEEeCccccceeeEccc---ceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEE
Confidence 45544 4445889999999999887766433 4445554 5 789999999999999999999
Q ss_pred cCCCceEEEeCC
Q 001190 1036 ADTLRLRCYIAP 1047 (1128)
Q Consensus 1036 ~~~~~~~~~~~~ 1047 (1128)
+.+++.+.....
T Consensus 781 ~p~l~~~~~~~~ 792 (902)
T 2oaj_A 781 IPDFKEQMSEHI 792 (902)
T ss_dssp TTTCCEEEEEEC
T ss_pred CcchHHHhhccC
Confidence 999999998874
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-57 Score=604.86 Aligned_cols=569 Identities=16% Similarity=0.255 Sum_probs=465.6
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+|+ +|++|+.|++|++
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKI 683 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEE
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEE
Confidence 3578999999999999999999999999999999999998766 5779999999999999999 8999999999999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
|| .+++.+..+.+|...|.+++|++..++.++++++.||.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 99 89999999999999999999998777789999999999999999999999999999999999999999999999984
Q ss_pred ccCCCceEEEEeCCCCceeeEecccc------------CCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFR------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 626 (1128)
++.|++||+.+++....+.... ...+.+++|+|++..+++++ ++.+.+||..++.....+..
T Consensus 764 ----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~- 837 (1249)
T 3sfz_A 764 ----DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT- 837 (1249)
T ss_dssp ----SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-
T ss_pred ----CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-
Confidence 8999999999988777664321 12577899999999999887 68999999999988877753
Q ss_pred CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceeccc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1128)
++...|.+++|+|+++++++++.||.|++|++.++. ....+.+
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~------------------------------------ 880 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-KVADCRG------------------------------------ 880 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-EEEEECC------------------------------------
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-eeeecCC------------------------------------
Confidence 345589999999999999999999999999987762 2222221
Q ss_pred CCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccc
Q 001190 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1128)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 786 (1128)
|...|.+++|+|+|..+++++.||
T Consensus 881 --------------------------------------------------------h~~~v~~v~~spdg~~l~s~s~dg 904 (1249)
T 3sfz_A 881 --------------------------------------------------------HLSWVHGVMFSPDGSSFLTASDDQ 904 (1249)
T ss_dssp --------------------------------------------------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred --------------------------------------------------------CccceEEEEECCCCCEEEEEeCCC
Confidence 455555556666665555555566
Q ss_pred eeEeeeccccCCCCCCceee------------------eeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEE
Q 001190 787 VQKLWKWHRNEQNPSGKATA------------------SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (1128)
Q Consensus 787 ~i~lw~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 848 (1128)
.+++|++............. .....++...++.... .+...+.+++|+|+++++++
T Consensus 905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~sp~g~~l~~ 978 (1249)
T 3sfz_A 905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY------LPEAQVSCCCLSPHLEYVAF 978 (1249)
T ss_dssp CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE------ECCSCEEEEEECTTSSEEEE
T ss_pred eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE------cccCcEEEEEEcCCCCEEEE
Confidence 66666544321100000000 0001112222222211 14667999999999999999
Q ss_pred Ee-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCC
Q 001190 849 AT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL 927 (1128)
Q Consensus 849 ~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 927 (1128)
++ +|.|++||+.+++....+.+|...|++++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++
T Consensus 979 g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A 979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS 1056 (1249)
T ss_dssp EETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS
T ss_pred EcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC
Confidence 98 89999999999999999999999999999999 9999999999999999999999876 456899999999999975
Q ss_pred CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCC
Q 001190 928 NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDAL 1006 (1128)
Q Consensus 928 ~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h 1006 (1128)
.+++++.|+.|++||+.+++....+..+ . ..+.+++|+||++++++++ |+.|++||+.+++.+..+..+
T Consensus 1057 -~l~~~~~dg~v~vwd~~~~~~~~~~~~~-----~-~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h--- 1126 (1249)
T 3sfz_A 1057 -RLLSWSFDGTVKVWNVITGRIERDFTCH-----Q-GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH--- 1126 (1249)
T ss_dssp -EEEEEESSSEEEEEETTTTCCCEEEECC-----S-SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC---
T ss_pred -cEEEEECCCcEEEEECCCCceeEEEccc-----C-CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC---
Confidence 5788999999999999998876554332 2 6789999999999999875 899999999999988777654
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcE
Q 001190 1007 SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSV 1086 (1128)
Q Consensus 1007 ~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i 1086 (1128)
...|++++|+|||++|++|+.||.|++||+.+++.+..+.+...... ...|...+.+++|+| |+.++++++ |.|
T Consensus 1127 ~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~l~fs~-dg~~l~s~~--g~v 1200 (1249)
T 3sfz_A 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG---TATHGGWVTDVCFSP-DSKTLVSAG--GYL 1200 (1249)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC----------CCSCCCEEEECT-TSSCEEEES--SSE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccc---ccccCceEEEEEECC-CCCEEEECC--CeE
Confidence 88999999999999999999999999999999988766532211111 124566789999999 688888885 899
Q ss_pred EEEcCCCCCC
Q 001190 1087 KVMEPSESEG 1096 (1128)
Q Consensus 1087 ~iWd~~~~~~ 1096 (1128)
++||+.+++.
T Consensus 1201 ~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1201 KWWNVATGDS 1210 (1249)
T ss_dssp EEBCSSSCBC
T ss_pred EEEECCCCce
Confidence 9999998875
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2e-56 Score=547.64 Aligned_cols=560 Identities=11% Similarity=0.111 Sum_probs=464.1
Q ss_pred cCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCC----Ccceeceeecccccc-eeEEEEec--CCCeEEEEEecCCC
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS----NDLRQHSQIDAHVGA-VNDLAFAY--PNKLLCVVTCGDDK 475 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~-v~~l~fs~--d~~~~~l~s~s~d~ 475 (1128)
..|.+.|.+++|+|||++||+++ ++.|+|||+.++ +... .+.+|.+. |++++|+| +++ +|++|+.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 45889999999999999999998 789999999987 5554 58899999 99999999 999 899999999
Q ss_pred eEEEEe-cCC--------CeEEEecCCCCCeEEEeccCCCCccEEEEEecc----CcEEEEecCCCCceeeecCCCCeEE
Q 001190 476 LIKVWE-LSG--------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCT 542 (1128)
Q Consensus 476 ~i~vWd-~~g--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~~~i~ 542 (1128)
+|++|| .++ ..+..+.+|...|.+++|++ ++++|++++.+ +.|++|| .......+..|...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 999999 544 67788899999999999976 67899999987 6888887 5667778888999999
Q ss_pred EEEEcCCCC-eEEEeeeccCCCceEEEEeCCCCceeeEeccccCC--ceeEEEEeCC-CCEEEEEECCCcEEEEECCCCe
Q 001190 543 TMLYSADGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 543 ~~~~s~~g~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
+++|+|++. .+++++ .++.|++||..+++.+..+.+|... .+.+++|+|+ +++|++++.||.|++||+.+++
T Consensus 165 ~~~~~~~~~~~l~~~~----~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVG----DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEECSSSSCEEEEEE----TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEECCCCCcEEEEEe----CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999998 677776 4899999999999999999987642 6899999999 9999999999999999999999
Q ss_pred eeEEEecC--CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccC
Q 001190 619 ILTSTDAE--GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1128)
Q Consensus 619 ~~~~~~~~--~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 696 (1128)
.+..+... .+...|.+++|+ ++++|++++.|+.|++||+.++ .....+..+. ......+..+.+. +
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~-~~~~~~~~~~~~~-~-------- 308 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDK-QQLGNQQVGVVAT-G-------- 308 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCT-TCGGGCEEEEEEE-E--------
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCC-CcccCceeEEEeC-C--------
Confidence 88887221 334589999999 9999999999999999999877 3333333321 1112234444443 3
Q ss_pred CCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCc
Q 001190 697 TPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 776 (1128)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 776 (1128)
+..+++++.++.+++|++..... ...+. +|...|.+++| |+
T Consensus 309 -----------------------------~~~l~~~~~~g~i~~~d~~~~~~-----~~~~~---~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 309 -----------------------------NGRIISLSLDGTLNFYELGHDEV-----LKTIS---GHNKGITALTV-NP- 349 (615)
T ss_dssp -----------------------------TTEEEEEETTSCEEEEETTEEEE-----EEEEC---CCSSCEEEEET-TT-
T ss_pred -----------------------------CCeEEEEECCCCEEEEECCCCcE-----EEEEe---CCCCCEEEEEe-cC-
Confidence 34456788889999999865221 12233 48999999999 88
Q ss_pred ceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEE
Q 001190 777 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKIS 855 (1128)
Q Consensus 777 ~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~ 855 (1128)
+++++.||.+++|++. .+. . .|...|.+++| +++..+++++ |+.|+
T Consensus 350 --l~~~~~dg~i~~w~~~-------------------------~~~---~--~~~~~v~~~~~-~~~~~l~~~~~d~~i~ 396 (615)
T 1pgu_A 350 --LISGSYDGRIMEWSSS-------------------------SMH---Q--DHSNLIVSLDN-SKAQEYSSISWDDTLK 396 (615)
T ss_dssp --TEEEETTSCEEETTTT-------------------------EEE---C--CCCSCEEEEEC-CSTTCCEEEETTTEEE
T ss_pred --cEEECCCCeEEEEEch-------------------------hhc---C--cccCceEEEEE-CCCcEEEEEeCCCCEE
Confidence 9999999999999753 000 1 38899999999 6667777776 89999
Q ss_pred EEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcC
Q 001190 856 LFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA 935 (1128)
Q Consensus 856 vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~ 935 (1128)
+||+.+++... .+.+++++| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+ +++|++++.
T Consensus 397 ~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~ 464 (615)
T 1pgu_A 397 VNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLE 464 (615)
T ss_dssp ETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEET
T ss_pred EEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeec
Confidence 99987665432 678999999 88888877 79999999999999888886 88999999999 889999999
Q ss_pred -CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEE
Q 001190 936 -DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCA 1013 (1128)
Q Consensus 936 -Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l 1013 (1128)
|+.|++||+.+++... .....+. ..+.+++|+|++++|++++ |+.|++||+.+++.+..+... |...|+++
T Consensus 465 ~d~~i~~~~~~~~~~~~----~~~~~~~-~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~~ 537 (615)
T 1pgu_A 465 EGNTIQVFKLSDLEVSF----DLKTPLR-AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF--RTSKINAI 537 (615)
T ss_dssp TTSCEEEEETTEEEEEE----ECSSCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC--CSSCEEEE
T ss_pred CCCeEEEEECCCccccc----cccCCcc-CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC--CCCceeEE
Confidence 9999999999864321 2233333 7899999999999999976 899999999999988776551 48999999
Q ss_pred EEee----------CCCEEEEEecCCcEEEEecCCC-ceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEEC
Q 001190 1014 VYSC----------NSQLVFATFCDGNIGVFDADTL-RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT 1082 (1128)
Q Consensus 1014 ~~s~----------dg~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~ 1082 (1128)
+|+| |+++|++++.||.|++||+.++ +.+..+. .|...+.+++|+| ++. |++++.
T Consensus 538 ~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------~h~~~v~~l~~s~-~~~-l~s~~~ 603 (615)
T 1pgu_A 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN------------AHKDGVNNLLWET-PST-LVSSGA 603 (615)
T ss_dssp EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT------------SSTTCEEEEEEEE-TTE-EEEEET
T ss_pred EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh------------cCccceEEEEEcC-CCC-eEEecC
Confidence 9999 9999999999999999999998 5666555 5677889999999 577 999999
Q ss_pred CCcEEEEcCCC
Q 001190 1083 DGSVKVMEPSE 1093 (1128)
Q Consensus 1083 dg~i~iWd~~~ 1093 (1128)
||.|++|++..
T Consensus 604 d~~v~iw~~~~ 614 (615)
T 1pgu_A 604 DACIKRWNVVL 614 (615)
T ss_dssp TSCEEEEEEC-
T ss_pred CceEEEEeeec
Confidence 99999999875
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-55 Score=547.44 Aligned_cols=587 Identities=11% Similarity=0.099 Sum_probs=432.3
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..||.+.|++++|+|+|++||+|+.||+|+||+..+++... ...|...|++++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 55899999999999999999999999999999998765443 235888999999999 87 799999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce-----------eeecCCCCeEEEEEEcCC
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----------VDYDAPGHWCTTMLYSAD 549 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-----------~~~~~~~~~i~~~~~s~~ 549 (1128)
.+++++..+. |.+.|++++|++ ++.+|++|+.||.|++||++..... ..+..|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 8888888886 778999999977 6789999999999999999876543 123557789999999996
Q ss_pred C-CeEEEeeeccCCCceEEEEeCCCCceeeEeccc-----------------cCCceeEEEEeCCCCEEEEEECCCcEEE
Q 001190 550 G-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-----------------RKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1128)
Q Consensus 550 g-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~s~dg~i~i 611 (1128)
+ ..+++++ .++.| +||+++++.+..+..| +...|.+++|+|++.+|++++.||.|++
T Consensus 163 ~~~~l~~g~----~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISY----EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEEC----SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEe----CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 5677765 48899 9999999999888766 1236999999999999999999999999
Q ss_pred EECCCCeeeEEEec-----C-----------CCCCCcceEEEc----CCC-CEEEEEEcC-----CcEEEEEcccCcccc
Q 001190 612 WDMDNVNILTSTDA-----E-----------GGLPNLPRLRFS----KEG-NLLAVTTAD-----NGFKILANAIGLRSL 665 (1128)
Q Consensus 612 wd~~~~~~~~~~~~-----~-----------~~~~~v~~v~~s----p~~-~~l~~~~~d-----g~i~iw~~~~~~~~~ 665 (1128)
||+.+++.+..... + .+...|.+++|+ |++ .++++|+.+ +.+.+|++..... .
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~-~ 316 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR-Y 316 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC-G
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC-c
Confidence 99999987764221 1 123368999995 443 567777665 3677887532100 0
Q ss_pred ccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEE
Q 001190 666 RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAE 745 (1128)
Q Consensus 666 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~ 745 (1128)
.+++.+....+|+
T Consensus 317 ----------------------------------------------------------------~~~s~~~~~~~~~--- 329 (902)
T 2oaj_A 317 ----------------------------------------------------------------SITSYEGMKNYYA--- 329 (902)
T ss_dssp ----------------------------------------------------------------GGCCHHHHHHHHH---
T ss_pred ----------------------------------------------------------------cccchhhhhhhhc---
Confidence 0000000000010
Q ss_pred EeeCCceeEEEecCCCCCcccEEEEEEec----------CcceEEEeeccceeEeeeccccCCCCC------------Cc
Q 001190 746 IVDSGQCRLVTMPESTDTSSKVVRLLYTN----------SAVGLLALGSNGVQKLWKWHRNEQNPS------------GK 803 (1128)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~----------~g~~l~~~~~dg~i~lw~~~~~~~~~~------------~~ 803 (1128)
...... .+. .++...|..+.+.+ +...+++++.||.+++|++..+..... ..
T Consensus 330 ---~~~~~~-~~~--~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~ 403 (902)
T 2oaj_A 330 ---NPKQMK-IFP--LPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPL 403 (902)
T ss_dssp ---SCSEEE-EEC--CSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTB
T ss_pred ---CccceE-EEe--cCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCC
Confidence 000000 000 01455677777654 334688888899999999854321000 00
Q ss_pred e----eeeeccceeccCCC--ccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEE----EE--ee-
Q 001190 804 A----TASAVPQHWLPSSG--LLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM----TT--FM- 869 (1128)
Q Consensus 804 ~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~----~~--~~- 869 (1128)
. .......+|+.... ......+.+ |...+..++|+||+++|++|+ |++|++||+.++... .. +.
T Consensus 404 v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G--~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~ 481 (902)
T 2oaj_A 404 ATTSMAASVPNKLWLGALSAAQNKDYLLKG--GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSR 481 (902)
T ss_dssp EEEEEEEEEEHHHHHHHHHTTBCCCCSCCC--SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHH
T ss_pred eeEEEEEEcCHHHHHHHHhcccCCCCcccC--CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechh
Confidence 0 00011223332110 001113344 777888899999999999998 999999999887431 11 11
Q ss_pred ----CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce---------------------------------------
Q 001190 870 ----SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--------------------------------------- 906 (1128)
Q Consensus 870 ----~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------------------------- 906 (1128)
+|...|.+++|+| ++++||+|+.||+|+|||+.+++
T Consensus 482 ~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (902)
T 2oaj_A 482 TLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG 560 (902)
T ss_dssp HTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred hcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence 7889999999999 99999999999999999998762
Q ss_pred ------eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecC-CCCCCCccEEEEc-----CC
Q 001190 907 ------VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA-GKTPTGDTRVQFN-----AD 974 (1128)
Q Consensus 907 ------~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~v~~s-----~d 974 (1128)
++..+.+|.+.|++|+||||| +||+|+.|++|+|||+.++..+....+.... +|. ..|.+++|+ ||
T Consensus 561 ~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~-~~V~sv~Fs~~~~~~D 638 (902)
T 2oaj_A 561 VRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS-ACVTCIEFVIMEYGDD 638 (902)
T ss_dssp CSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC-CCEEEEEEEEEECTTS
T ss_pred CCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc-cceEEEEEEEEecCCC
Confidence 367788999999999999999 9999999999999999886643222222232 444 789999999 88
Q ss_pred C---CEEEEEe-cCeEEEEec---CCcccccccccCC--CCCCCeEEEE-Ee----------------------eCCCEE
Q 001190 975 Q---VRMLVVH-ETQLAIYDA---SKMERIRQWTPQD--ALSAPISCAV-YS----------------------CNSQLV 1022 (1128)
Q Consensus 975 ~---~~l~~~~-d~~i~v~d~---~~~~~~~~~~~~~--~h~~~v~~l~-~s----------------------~dg~~l 1022 (1128)
| ++|++++ |++|++||+ .+|+....+..+. .|..+|.+++ |+ ++|.+|
T Consensus 639 g~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l 718 (902)
T 2oaj_A 639 GYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVL 718 (902)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEE
T ss_pred CCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEE
Confidence 6 7888875 999999999 7888777666543 2357787777 66 455555
Q ss_pred EEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEE---E------EecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1023 FATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV---A------AHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1023 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
+++ +..|+||++.+++...+.. .|...+..+ . |++ ++..|++++.||+|++|++.+
T Consensus 719 ~~~--~~~ir~~~~~~~k~~~k~~------------~~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~ 783 (902)
T 2oaj_A 719 ITG--FDDIRLITLGKSKSTHKGF------------KYPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPD 783 (902)
T ss_dssp EEC--SSEEEEECTTCCCEEEEEC------------SSCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTT
T ss_pred EEe--ccceEEEeCccccceeeEc------------ccceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcc
Confidence 544 7889999999998887765 333444554 5 677 588999999999999999999
Q ss_pred CCCC
Q 001190 1094 SEGK 1097 (1128)
Q Consensus 1094 ~~~~ 1097 (1128)
.+..
T Consensus 784 l~~~ 787 (902)
T 2oaj_A 784 FKEQ 787 (902)
T ss_dssp CCEE
T ss_pred hHHH
Confidence 8753
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.3e-47 Score=482.01 Aligned_cols=562 Identities=13% Similarity=0.151 Sum_probs=424.3
Q ss_pred EEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 338 AVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 338 ~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
...+ +|.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|.+.|++++|+|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~ 65 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIA 65 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEG
T ss_pred ceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeC
Confidence 3344 4999999999999999 789999999999999999887643 778999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-CeEEEecCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHE 494 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g-~~~~~~~~h~ 494 (1128)
+|++||+|+.||.|+|||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|++|++|| .++ .....+.+|.
T Consensus 66 ~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 140 (814)
T 3mkq_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (814)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence 99999999999999999999998765 5778999999999999999 799999999999999 655 6678889999
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC-CeEEEEEEcC--CCCeEEEeeeccCCCceEEEEeC
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~~~~s~--~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
..|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++ .++.|++||+
T Consensus 141 ~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----~dg~i~~~d~ 215 (814)
T 3mkq_A 141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS----DDLTIKIWDY 215 (814)
T ss_dssp SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC----TTSEEEEEET
T ss_pred CcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe----CCCEEEEEEC
Confidence 99999999763 45799999999999999998887777766655 7899999999 999999987 4899999999
Q ss_pred CCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCC--EEEEEEc
Q 001190 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTA 649 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l~~~~~ 649 (1128)
.+++.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++. ++++++
T Consensus 216 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~- 291 (814)
T 3mkq_A 216 QTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASGF- 291 (814)
T ss_dssp TTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEEEEE-
T ss_pred CCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEEEEe-
Confidence 99999999998876 89999999999999999999999999999999888887654 4799999999987 355554
Q ss_pred CCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCc
Q 001190 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPR 729 (1128)
Q Consensus 650 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (1128)
++.+.+|++... ...+.++|+|+.++++........ . ..
T Consensus 292 ~~~~~~~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~~~~----------~-------------~~ 330 (814)
T 3mkq_A 292 DNGFTVLSLGND------------------EPTLSLDPVGKLVWSGGKNAAASD----------I-------------FT 330 (814)
T ss_dssp TTEEEEEECSCC------------------SCCEEECSSSEEEEECCTTSCTTC----------E-------------EE
T ss_pred CCCEEEEEcCCC------------------CceeEECCCCCEEEECccccccee----------e-------------ee
Confidence 677888887544 123577788877764332211000 0 00
Q ss_pred ccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeec
Q 001190 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1128)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~ 809 (1128)
.... ..|++.... ........+ ..+...+.+++|+|+|+++++++ +|.+.+|++...
T Consensus 331 ~~~~-----~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~------------- 387 (814)
T 3mkq_A 331 AVIR-----GNEEVEQDE-PLSLQTKEL---GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW------------- 387 (814)
T ss_dssp EECC-----SCCCCCSSS-CBCCCCEEE---CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT-------------
T ss_pred eecc-----cccccccCc-cceeeeecC---CCCccCCceeEECCCCCEEEEec-CCEEEEEECccc-------------
Confidence 0000 001111000 000000111 12566789999999999888887 899999985321
Q ss_pred cceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCC---
Q 001190 810 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN--- 885 (1128)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~--- 885 (1128)
.. .+...+.+++|+|||+++++++ +|.|++|+. +.+|...+.+++|+| ++
T Consensus 388 ----~~-------------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~ 441 (814)
T 3mkq_A 388 ----RN-------------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFS 441 (814)
T ss_dssp ----EE-------------EEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEEC
T ss_pred ----cc-------------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceec
Confidence 00 1345688999999999999998 899999963 345788899999999 77
Q ss_pred CEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEE------cCCCcEEEEECC--------------
Q 001190 886 NIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS------GADAQLCVWSID-------------- 945 (1128)
Q Consensus 886 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~------~~Dg~i~iwd~~-------------- 945 (1128)
.+|++++.|+.|++||+.+++.+..+..|.. .++|+|||++|+++ +.++.+.+|--.
T Consensus 442 ~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (814)
T 3mkq_A 442 GALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDD 518 (814)
T ss_dssp SSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBT
T ss_pred ceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCcc
Confidence 5788899999999999999999999988865 89999999999999 666655555421
Q ss_pred -CCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEE
Q 001190 946 -TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 1023 (1128)
Q Consensus 946 -~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1023 (1128)
.+........... ...+.+..|. +..++... .+.+..+. .+... .+... ..++..+.|.+++..++
T Consensus 519 ~~~~~~~~~~~~~~----~~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~-~~~~~---~~~~~~~~~~~~~~~l~ 586 (814)
T 3mkq_A 519 SEGVDEAFDVLYEL----SESITSGKWV--GDVFIFTTATNRLNYFV--GGKTY-NLAHY---TKEMYLLGYLARDNKVY 586 (814)
T ss_dssp TTBCTTTEEEEEEE----CSCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEE-EEEEC---SSCCEEEEEEGGGTEEE
T ss_pred ccchhhheeeeeEe----ccEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeE-EEEEC---CccEEEEEEEecCCEEE
Confidence 0000001111100 1335566665 33333333 34444432 12211 11111 45667777889999999
Q ss_pred EEecCCcEEEEecCC
Q 001190 1024 ATFCDGNIGVFDADT 1038 (1128)
Q Consensus 1024 t~~~dg~i~vwd~~~ 1038 (1128)
....++.+.+|++..
T Consensus 587 ~~d~~~~~~~~~l~~ 601 (814)
T 3mkq_A 587 LADREVHVYGYEISL 601 (814)
T ss_dssp EECTTCCEEEEECCH
T ss_pred EEcCCCCEEEEEECc
Confidence 999999999999764
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.1e-46 Score=469.76 Aligned_cols=574 Identities=14% Similarity=0.185 Sum_probs=420.5
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
+.+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+. .+.+|.++|++++|+|+++ +|++|+.||.|++
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~v 81 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRV 81 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3588999999999999999999999999999999999987666 5778999999999999999 8999999999999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC-CceeeecCCCCeEEEEEEcC-CCCeEEEe
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSC 556 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~~~~s~-~g~~l~~~ 556 (1128)
|| .+++.+..+.+|.+.|.+++|++ ++.+|++++.||.|++||++.. .....+..|...|.+++|+| ++..++++
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 99 89999999999999999999977 6689999999999999999887 45567788889999999999 88889888
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC--CCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
+ .++.|++||+.+++....+..+....+.+++|+| ++.++++++.||.|++||+.+++.+..+..+. ..|.+
T Consensus 160 ~----~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~ 233 (814)
T 3mkq_A 160 C----LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (814)
T ss_dssp E----TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred e----CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEE
Confidence 7 4899999999999988888888766899999999 99999999999999999999999988887554 47999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCccc
Q 001190 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1128)
++|+|+++++++++.||.|++||+.++ .....+.. +...+.+++++|+|..++
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~-----~~~~v~~~~~~~~~~~~~--------------------- 286 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNV-----GLERSWCIATHPTGRKNY--------------------- 286 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTC-SEEEEECC-----SSSSEEEEEECTTCGGGE---------------------
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeec-----CCCcEEEEEEccCCCceE---------------------
Confidence 999999999999999999999999886 33333333 234688888888876431
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeE-eeec
Q 001190 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK-LWKW 793 (1128)
Q Consensus 715 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~-lw~~ 793 (1128)
++.+.++.+.+|++.. ....+.++|+|..+++++.+.... ++..
T Consensus 287 ---------------~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 331 (814)
T 3mkq_A 287 ---------------IASGFDNGFTVLSLGN--------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTA 331 (814)
T ss_dssp ---------------EEEEETTEEEEEECSC--------------------CSCCEEECSSSEEEEECCTTSCTTCEEEE
T ss_pred ---------------EEEEeCCCEEEEEcCC--------------------CCceeEECCCCCEEEECcccccceeeeee
Confidence 1223334555555321 123467788888888776653211 1100
Q ss_pred cccCCCCCCceeeeeccceeccCCCcccccccc-CCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCC
Q 001190 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVA-GVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP 872 (1128)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~ 872 (1128)
.....|+...+........ ...+...+.+++|+|||++++++++|.+.+|++...... +.
T Consensus 332 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~-----~~ 392 (814)
T 3mkq_A 332 --------------VIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNK-----AF 392 (814)
T ss_dssp --------------ECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEE-----EE
T ss_pred --------------ecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECcccccc-----CC
Confidence 0001223333322211110 012566789999999999999999999999998765443 23
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCC---CEEEEEcCCCcEEEEECCCCcc
Q 001190 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL---NILVSSGADAQLCVWSIDTWEK 949 (1128)
Q Consensus 873 ~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~---~~l~s~~~Dg~i~iwd~~~~~~ 949 (1128)
+.+.+++|+| +++++|+++.+|.|++|+ .+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++.
T Consensus 393 ~~i~~~~~sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~ 463 (814)
T 3mkq_A 393 GKCQDFVWGP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTL 463 (814)
T ss_dssp EECSEEEECT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCE
T ss_pred CceEEEEEeC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcE
Confidence 5688999999 999999999999999995 456788899999999998 6889999999999999999876
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEE------ecCeEEEEecCCccccccccc-----CCCCCCCeEEEEEeeC
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV------HETQLAIYDASKMERIRQWTP-----QDALSAPISCAVYSCN 1018 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~------~d~~i~v~d~~~~~~~~~~~~-----~~~h~~~v~~l~~s~d 1018 (1128)
+.....+ ...++|+|||++++++ .++.+.++....+.....+.. ..........+. + -
T Consensus 464 ~~~~~~~---------~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 532 (814)
T 3mkq_A 464 VRRIDVN---------AKDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLY-E-L 532 (814)
T ss_dssp EEEESSC---------EEEEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEE-E-E
T ss_pred EEEEecC---------CCEEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeee-E-e
Confidence 4443222 2289999999999998 666666664432221111100 000001111110 0 0
Q ss_pred CCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1019 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1019 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
+..+.++..++.+.+|....++......... ..+....+.. ..+.|.+ ++..++....++.++.|++..
T Consensus 533 ~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~-~~~~l~~~d~~~~~~~~~l~~ 601 (814)
T 3mkq_A 533 SESITSGKWVGDVFIFTTATNRLNYFVGGKT---YNLAHYTKEM--YLLGYLA-RDNKVYLADREVHVYGYEISL 601 (814)
T ss_dssp CSCCSEEEEETTEEEEECTTSEEEEEETTEE---EEEEECSSCC--EEEEEEG-GGTEEEEECTTCCEEEEECCH
T ss_pred ccEEEeeEEeCCEEEEEcCCCeEEEEeCCee---EEEEECCccE--EEEEEEe-cCCEEEEEcCCCCEEEEEECc
Confidence 1112233334455555443332222111000 0000012333 3455667 578889999999999998753
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.5e-45 Score=418.80 Aligned_cols=283 Identities=21% Similarity=0.378 Sum_probs=262.9
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
+|.++|++++|+|+++ +|++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|++|
T Consensus 106 gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGKLL 165 (410)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCCEE
Confidence 6889999999999998 78999999999999999987654 388999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
++|+.|++|++||+.++++++ ++.+|...|.+++|+|++. +|++|+.|++|++|| .++.++..+.+|...|.++
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 999999999999999987766 5789999999999999999 899999999999999 8999999999999999999
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC--------------------CCeEEEeeecc
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--------------------GSRLFSCGTSK 560 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~--------------------g~~l~~~~~~~ 560 (1128)
++++ ++.+|++++.|+.|++||+.+......+..|...|.+++|+|+ |.++++++
T Consensus 241 ~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--- 315 (410)
T 1vyh_C 241 RPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--- 315 (410)
T ss_dssp EECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE---
T ss_pred EECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe---
Confidence 9866 6789999999999999999999988899999999999999997 66788887
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
.|+.|++||+.+++.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+
T Consensus 316 -~D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~ 391 (410)
T 1vyh_C 316 -RDKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTSLDFHKT 391 (410)
T ss_dssp -TTSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEEEEECSS
T ss_pred -CCCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEEEEEcCC
Confidence 499999999999999999999887 89999999999999999999999999999999998887654 47999999999
Q ss_pred CCEEEEEEcCCcEEEEEc
Q 001190 641 GNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~ 658 (1128)
+++|++|+.||+|++|++
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999985
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=358.96 Aligned_cols=285 Identities=16% Similarity=0.233 Sum_probs=259.6
Q ss_pred cCCCcEEEEEEeCC----CCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC
Q 001190 342 HQGSTVISMDFHPS----HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1128)
Q Consensus 342 ~h~~~V~~v~fspd----g~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 417 (1128)
+|.+.|++++|+|+ +. +|++|+.|++|+|||+.+++... ...+.+|...|.+++|+|+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~-----------------~~~l~gh~~~v~~~~~~~~ 91 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDL-----------------QWSLEGHQLGVVSVDISHT 91 (321)
T ss_dssp SSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECSS
T ss_pred cCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeee-----------------eeeeccCCCCEEEEEECCC
Confidence 59999999999985 44 78999999999999998765432 1237899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~ 496 (1128)
+.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++|| .+++....+..|...
T Consensus 92 ~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~ 166 (321)
T 3ow8_A 92 LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166 (321)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred CCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCce
Confidence 9999999999999999999988765 4678999999999999999 899999999999999 889999999999999
Q ss_pred eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce
Q 001190 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1128)
|.+++|++ ++++|++++.||.|++||+++++....+..|...|.+++|+|++++|++++ .|+.|++||+++++.
T Consensus 167 v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s----~dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 167 ILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS----DDGYIKIYDVQHANL 240 (321)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC----TTSCEEEEETTTCCE
T ss_pred EEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc----CCCeEEEEECCCcce
Confidence 99999977 678999999999999999999888888999999999999999999999998 489999999999999
Q ss_pred eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEE
Q 001190 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1128)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw 656 (1128)
...+.+|.. .|.+++|+|++.+|++++.||.|++||+.+++++..+..+ ...|.+++|+|++++|++++.||.|++|
T Consensus 241 ~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 241 AGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp EEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 999999987 8999999999999999999999999999999999888754 4589999999999999999999999999
Q ss_pred Ec
Q 001190 657 AN 658 (1128)
Q Consensus 657 ~~ 658 (1128)
|.
T Consensus 318 d~ 319 (321)
T 3ow8_A 318 DC 319 (321)
T ss_dssp EC
T ss_pred eC
Confidence 96
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.7e-39 Score=359.13 Aligned_cols=292 Identities=18% Similarity=0.278 Sum_probs=260.2
Q ss_pred cceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 335 RTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 335 ~~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
.....++ +|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.+++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~ 104 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEE
Confidence 3344444 5999999999999998 789999999999999998887643 677999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCc-ceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEec
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~ 491 (1128)
|+|+|++||+|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++|| .+++.+..+.
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEc
Confidence 999999999999999999999987642 233346789999999999999885 88999999999999 8899999999
Q ss_pred CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
+|.+.|.+++|++ ++.++++|+.||.|++||++++.....+..|...|.+++|+|+++++++++ .|+.|++||+
T Consensus 182 ~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s----~d~~v~iwd~ 255 (340)
T 1got_B 182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS----DDATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEET
T ss_pred CCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc----CCCcEEEEEC
Confidence 9999999999977 668999999999999999999988889999999999999999999999998 4899999999
Q ss_pred CCCceeeEecccc-CCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC
Q 001190 572 SEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 572 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
++++.+..+..+. ...+.+++|+|++++|++|+.||.|++||+.+++.+..+..| ...|.+++|+|++.+|++|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC--CCcEEEEEEcCCCCEEEEEcCC
Confidence 9998887775332 235889999999999999999999999999999988888755 4589999999999999999999
Q ss_pred CcEEEEE
Q 001190 651 NGFKILA 657 (1128)
Q Consensus 651 g~i~iw~ 657 (1128)
+.|++||
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.7e-39 Score=359.17 Aligned_cols=294 Identities=17% Similarity=0.247 Sum_probs=261.3
Q ss_pred ceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
....++ +|.+.|+|++|+|||+ +|++|+.||+|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 444555 5999999999999998 789999999999999988876543 5668889999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCc---ceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~---~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~ 490 (1128)
+|+|.+||+|+.|+.+++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++|| .+++.+..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999875421 122335678999999999999999 799999999999999 899999999
Q ss_pred cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEe
Q 001190 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1128)
Q Consensus 491 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd 570 (1128)
.+|...|.++++++.+++.+|++|+.||.|++||++++.....+..|...|.+++|+|++.++++++. |+.|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 99999999999998877889999999999999999999988899999999999999999999999984 89999999
Q ss_pred CCCCceeeEeccccC-CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc
Q 001190 571 ESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1128)
Q Consensus 571 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 649 (1128)
+++++.+..+..+.. ..+.+++|+|++.+|++|+.|+.|++||+.+++.+..+..| ...|.+++|+|++++|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECCCCCEEEEEcC
Confidence 999888777765432 25788999999999999999999999999999988877654 458999999999999999999
Q ss_pred CCcEEEEE
Q 001190 650 DNGFKILA 657 (1128)
Q Consensus 650 dg~i~iw~ 657 (1128)
|++|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.9e-39 Score=354.64 Aligned_cols=299 Identities=21% Similarity=0.288 Sum_probs=258.7
Q ss_pred eEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
+..++ +|.+.|++++|+|++..+|++|+.|++|++||+.+...... .+...+.+|...|.+++|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~~s 74 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCTLT 74 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEEEC
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEEEC
Confidence 33444 49999999999998755899999999999999875432211 0123488999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCC
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA 495 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~ 495 (1128)
|+|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||..++.+..+.+|..
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~~~~~~~~h~~ 149 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQCLATLLGHND 149 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSCEEEEECCCSS
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeccCC
Confidence 999999999999999999999998665 5789999999999999999 89999999999999988889999999999
Q ss_pred CeEEEeccCCC----CccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 496 PVYSICPHHKE----NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 496 ~v~~~~~~~~~----~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
.|.++++.+.. ++.++++++.|+.|++||++.......+..|...|.+++|+|+|++|++++ .|+.|++||+
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~----~dg~i~iwd~ 225 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG----KDGEIMLWNL 225 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE----TTCEEEEEET
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe----CCCeEEEEEC
Confidence 99999998743 355899999999999999998888888899999999999999999999998 4999999999
Q ss_pred CCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC------CCCCCcceEEEcCCCCEEE
Q 001190 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE------GGLPNLPRLRFSKEGNLLA 645 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~v~~sp~~~~l~ 645 (1128)
.+++.+..+..+. .+.+++|+|++.++++++.+ .+++|++..+..+..+... .+...+.+++|+|||++|+
T Consensus 226 ~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 302 (319)
T 3frx_A 226 AAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302 (319)
T ss_dssp TTTEEEEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE
T ss_pred CCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEE
Confidence 9999999888653 69999999999998888755 5999999988877766432 1234578999999999999
Q ss_pred EEEcCCcEEEEEcccC
Q 001190 646 VTTADNGFKILANAIG 661 (1128)
Q Consensus 646 ~~~~dg~i~iw~~~~~ 661 (1128)
+|+.||.|++|++.++
T Consensus 303 sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 303 AGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEETTSCEEEEEEEEC
T ss_pred EeecCceEEEEEEeec
Confidence 9999999999998764
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.2e-39 Score=351.53 Aligned_cols=290 Identities=18% Similarity=0.308 Sum_probs=252.3
Q ss_pred eEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
...++ +|.+.|++++|||+|+ +|++|+.||+|+|||+.+++.+.. +.+|..+|.+++|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~ 64 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEe
Confidence 34445 4999999999999998 789999999999999998876643 77899999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-CeEEEecCC
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGH 493 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g-~~~~~~~~h 493 (1128)
|++++|++|+.|++|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++|+.|++|++|| .++ .....+.+|
T Consensus 65 ~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h 139 (304)
T 2ynn_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (304)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred CCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhccc
Confidence 999999999999999999999998766 5789999999999999999 899999999999999 666 455788999
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-CCCCeEEEEEEcC--CCCeEEEeeeccCCCceEEEEe
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWN 570 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~~~~s~--~g~~l~~~~~~~~~~~~i~~wd 570 (1128)
...|.+++|+|. ++.+|++|+.|++|++||+........+. .+...+..+.|+| ++.+|++++ .|+.|++||
T Consensus 140 ~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s----~D~~i~iWd 214 (304)
T 2ynn_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS----DDLTIKIWD 214 (304)
T ss_dssp CSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE----TTSEEEEEE
T ss_pred CCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc----CCCeEEEEe
Confidence 999999999874 45799999999999999998877666554 4456889999987 778899988 499999999
Q ss_pred CCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCC--EEEEEE
Q 001190 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTT 648 (1128)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l~~~~ 648 (1128)
+++++++..+.+|.. .+.+++|+|++.+|++|+.||.|++||..+++....+..+ ...+.+++|+|++. ++++|+
T Consensus 215 ~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS--SSSEEEEEECTTCGGGCEEEEE
T ss_pred CCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC--CccEEEEEECCCCCceEEEEec
Confidence 999999999999987 8999999999999999999999999999999999888754 34789999999875 577777
Q ss_pred cCCcEEEEEccc
Q 001190 649 ADNGFKILANAI 660 (1128)
Q Consensus 649 ~dg~i~iw~~~~ 660 (1128)
.+ .+.+|++..
T Consensus 292 ~~-g~~~~~~~~ 302 (304)
T 2ynn_A 292 DN-GFTVLSLGN 302 (304)
T ss_dssp TT-EEEEEECC-
T ss_pred CC-ceEEEEecc
Confidence 55 466777643
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.1e-39 Score=364.80 Aligned_cols=301 Identities=17% Similarity=0.267 Sum_probs=260.2
Q ss_pred cceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 335 RTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 335 ~~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
..+..++ +|.+.|++++|+|+|+ +|++|+.|++|+|||+.+++.... +.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence 3445555 4999999999999998 789999999999999998876643 778999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCc----ceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEE
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~ 488 (1128)
|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++|| .+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999976421 1122357799999999999998654 699999999999999 8888887
Q ss_pred Ee-----cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC-CCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCC
Q 001190 489 NF-----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1128)
Q Consensus 489 ~~-----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~ 562 (1128)
.+ .+|...|.+++|++. ++.++++|+.||+|++||++. ......+..|...|.+++|+|+|+++++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 77 689999999999753 567999999999999999984 4566778889999999999999999999984
Q ss_pred CceEEEEeCCCCceeeEeccccC------CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec--CCCCCCcce
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA--EGGLPNLPR 634 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~ 634 (1128)
|+.|++||+++++.+..+..+.. ..+.+++|+|++++|++|+.||.|++||..+++.+..+.. .+|...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 99999999999999888876533 2478999999999999999999999999999988777632 345668999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++|+|++++|++|+.|++|++|++...
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999998765
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-38 Score=363.31 Aligned_cols=285 Identities=19% Similarity=0.310 Sum_probs=259.4
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++..+ ++.+|.+.|++++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 77899999999999999999999999999999999998766 5889999999999999999 899999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+++++..+.+|...|.+++|++ ++.+|++|+.|++|++||++++.....+..|...|.++.++|+|.++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 88899999999999999999987 5679999999999999999999998899999999999999999999999984
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCC--------------------CCEEEEEECCCcEEEEECCCCeee
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--------------------QNHFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
|+.|++||+.+++....+.+|.. .+.+++|+|+ +.+|++|+.||.|++||+.++..+
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 89999999999999999999887 8999999986 678999999999999999999999
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCc
Q 001190 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 700 (1128)
..+..|. ..|.+++|+|++++|++++.||.|++||+.++. ....
T Consensus 332 ~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~-~~~~--------------------------------- 375 (410)
T 1vyh_C 332 MTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-CMKT--------------------------------- 375 (410)
T ss_dssp EEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSC-CCEE---------------------------------
T ss_pred EEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eEEE---------------------------------
Confidence 8887554 479999999999999999999999999986541 1111
Q ss_pred ceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEE
Q 001190 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1128)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 780 (1128)
+ .+|...|.+++|+|++.+|+
T Consensus 376 --------------------------------------------------------~---~~h~~~v~~l~~~~~~~~l~ 396 (410)
T 1vyh_C 376 --------------------------------------------------------L---NAHEHFVTSLDFHKTAPYVV 396 (410)
T ss_dssp --------------------------------------------------------E---ECCSSCEEEEEECSSSSCEE
T ss_pred --------------------------------------------------------E---cCCCCcEEEEEEcCCCCEEE
Confidence 0 12788899999999999999
Q ss_pred EeeccceeEeeec
Q 001190 781 ALGSNGVQKLWKW 793 (1128)
Q Consensus 781 ~~~~dg~i~lw~~ 793 (1128)
+++.||.|++|++
T Consensus 397 sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 397 TGSVDQTVKVWEC 409 (410)
T ss_dssp EEETTSEEEEEC-
T ss_pred EEeCCCcEEEEeC
Confidence 9999999999974
No 21
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-38 Score=350.63 Aligned_cols=302 Identities=17% Similarity=0.242 Sum_probs=247.5
Q ss_pred ceEEee-cCCC-cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 336 TVAVSL-HQGS-TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 336 ~~~~~~-~h~~-~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
.+..++ +|.+ .|++++|+|+|+ +||+|+.|++|+|||+.++..... .....+|...|.+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVA 68 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEE
Confidence 344445 4877 999999999999 789999999999999987754321 122578999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC---eEEE
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFN 489 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~---~~~~ 489 (1128)
|+|+|++||+|+.|++|++||+.++.. .....+.+|...|++++|+|+++ +|++|+.|++|++|| .++. .+..
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~ 145 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV 145 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence 999999999999999999999987642 22336889999999999999999 899999999999999 5543 4567
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc--eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
+.+|...|.+++|+| ++.+|++++.|+.|++||++.... ...+..|...|.+++|+|+|++|++++ .|+.|+
T Consensus 146 ~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s----~D~~v~ 219 (345)
T 3fm0_A 146 LNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS----DDRTVR 219 (345)
T ss_dssp ECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSCEE
T ss_pred ecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe----CCCeEE
Confidence 889999999999987 567999999999999999987653 356788889999999999999999998 499999
Q ss_pred EEeCCCC---------------ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee----e---EEEec
Q 001190 568 EWNESEG---------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI----L---TSTDA 625 (1128)
Q Consensus 568 ~wd~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~----~---~~~~~ 625 (1128)
+|+.... +++..+.+.+...|..++|++++..|++++.|+.|++|+...+.. . .....
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 299 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH 299 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET
T ss_pred EeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec
Confidence 9996321 334556664555899999999999999999999999999876431 1 11122
Q ss_pred CCCCCCcceEEEcCCC-CEEEEEEcCCcEEEEEcccCcc
Q 001190 626 EGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLR 663 (1128)
Q Consensus 626 ~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~ 663 (1128)
.+|...|.+++|+|++ .+|++++.||.|++|++.+++.
T Consensus 300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 3556689999999987 5999999999999999987743
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-38 Score=356.13 Aligned_cols=292 Identities=15% Similarity=0.164 Sum_probs=239.0
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeec------cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
.|...|++|+|||||+ +||+|+. |+.|++|+..++...... .....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~---------------~~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESL---------------CTAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGG---------------CSEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeE---------------ecccCCCCCCEEEEEEc
Confidence 5999999999999999 7899987 678999998777654321 11255789999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceec-eeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
|++++| +++.||+|+|||+.+++..... ....+|.+.|++++|+|+++ +|++|+.|++|++|| .+++.+..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 6778999999999988765322 23458999999999999999 899999999999999 889999999999
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec--CCCCeEEEEEEcCCCC-eEEEeeeccCCCceEEEEe
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWN 570 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~~~~s~~g~-~l~~~~~~~~~~~~i~~wd 570 (1128)
...|++++|++..+ .++++++.||.|++||+++++....+. .+...+.+++|+|++. ++++++ .++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~----~d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD----ETGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE----SSSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee----cccceeEEE
Confidence 99999999987543 478999999999999998877665443 4556899999999865 566665 488999999
Q ss_pred CCCCceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCCEEEEEE
Q 001190 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTT 648 (1128)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~ 648 (1128)
+++++.+..+.+|.. .|.+++|+|++ ++|++|+.||.|+|||+++++.+..+ +|...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999887 89999999987 57889999999999999999887665 4556899999998 899999999
Q ss_pred cCCcEEEEEcccC
Q 001190 649 ADNGFKILANAIG 661 (1128)
Q Consensus 649 ~dg~i~iw~~~~~ 661 (1128)
.||+|++|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999999765
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.3e-38 Score=346.08 Aligned_cols=287 Identities=14% Similarity=0.273 Sum_probs=255.8
Q ss_pred ccCCCcceEEEEEccC----CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeE
Q 001190 402 FKDVPISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spd----g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i 477 (1128)
+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+++.. ....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 6689999999999985 679999999999999999876532 2335789999999999999999 89999999999
Q ss_pred EEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 478 ~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
++|| .+++.+..+..|...+.+++|+| ++++|++++.||.|++|+++.......+..+...+.+++|+|+|++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999 88999999999999999999977 67899999999999999999999988898899999999999999999999
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
+. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.||.|++||+.+++....+..+ ...|.+++
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~ 255 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVA 255 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEEEE
Confidence 84 89999999999999999999887 8999999999999999999999999999999988887754 45799999
Q ss_pred EcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCccccc
Q 001190 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIN 716 (1128)
Q Consensus 637 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1128)
|+|++++|++++.|++|++||+.++. ....
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~~-~~~~------------------------------------------------- 285 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTRT-CVHT------------------------------------------------- 285 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTE-EEEE-------------------------------------------------
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCE-EEEE-------------------------------------------------
Confidence 99999999999999999999987652 1111
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeec
Q 001190 717 GVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1128)
Q Consensus 717 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 793 (1128)
+ .+|...|.+++|+|++..|++++.||.|++||.
T Consensus 286 ----------------------------------------~---~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 286 ----------------------------------------F---FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ----------------------------------------E---CCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ----------------------------------------E---cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 1 127788999999999999999999999999985
No 24
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.4e-37 Score=345.94 Aligned_cols=287 Identities=16% Similarity=0.220 Sum_probs=255.9
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.+|.+.|.+++|+|||++|++|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ +|++|+.|+.|++
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~i 123 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSI 123 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEE
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEE
Confidence 3588999999999999999999999999999999999988665 5778999999999999999 8999999999999
Q ss_pred Ee-cCC----CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEE
Q 001190 480 WE-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 480 Wd-~~g----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 554 (1128)
|| .++ .....+.+|.+.|.++.|++ ++ .+++++.|++|++||++++.....+..|...|.+++|+|++++++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLD--DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECC--CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence 99 444 34577889999999999965 33 589999999999999999988888999999999999999999999
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
+++. |+.|++||+++++.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+........|.+
T Consensus 201 sg~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 201 SGAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp EEET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred EEeC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 9884 99999999999999999999887 899999999999999999999999999999988887765555557999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCccc
Q 001190 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1128)
++|+|++++|++|+.|+.|++||+.++.. ..
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~------------------------------------------------ 306 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADR-AG------------------------------------------------ 306 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCE-EE------------------------------------------------
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcE-ee------------------------------------------------
Confidence 99999999999999999999999865411 10
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeee
Q 001190 715 INGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 792 (1128)
Q Consensus 715 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~ 792 (1128)
.+ .+|...|.+++|+|+|.+|++++.||.|++||
T Consensus 307 -----------------------------------------~~---~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 307 -----------------------------------------VL---AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----------------------------------------EE---ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -----------------------------------------Ee---ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 01 22888999999999999999999999999995
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.7e-38 Score=347.39 Aligned_cols=295 Identities=13% Similarity=0.136 Sum_probs=233.3
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCc-cccccccCCCCCCCeeEEEecc
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL-LMANDVAGVNLEEAVPCIALSK 841 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~ 841 (1128)
+...|.+++|+|||++|++++ |+++++|+... .+|+..... ..........+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 667899999999999777665 88899997421 112111110 0000011112567899999999
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEE----eeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccccccc
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTT----FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK 916 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~----~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 916 (1128)
|+.+ ++++ ||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+
T Consensus 93 d~~l-~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 ERGI-LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TTEE-EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCeE-EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 9754 5555 99999999998875443 458999999999999 999999999999999999999999999999999
Q ss_pred CeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC-CCEEEEEe-cCeEEEEecCC
Q 001190 917 RITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QVRMLVVH-ETQLAIYDASK 993 (1128)
Q Consensus 917 ~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-~~~l~~~~-d~~i~v~d~~~ 993 (1128)
.|++++|++++. +|++++.|++|++||+.+++....+... .....+.+++|+|+ +.++++++ |+.|++||+.+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS----APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecc----eeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 999999999985 7899999999999999998765443222 12256889999995 56777765 89999999999
Q ss_pred cccccccccCCCCCCCeEEEEEeeCC-CEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecC
Q 001190 994 MERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1072 (1128)
Q Consensus 994 ~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1072 (1128)
++.+..+..| ...|++++|+||| ++|++|+.|++|+|||+.++++.. +. +|...|.+++|+|+
T Consensus 247 ~~~~~~~~~h---~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~------------~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 247 TSCVLSSAVH---SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ------------AHRDFVRDATWSPL 310 (344)
T ss_dssp --CCEEEECC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC------------CCSSCEEEEEECSS
T ss_pred CcEEEEEcCC---CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec------------CCCCCEEEEEEeCC
Confidence 9998888765 8899999999998 589999999999999999987653 33 56677899999997
Q ss_pred CCCEEEEEECCCcEEEEcCCCCC
Q 001190 1073 EPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1073 ~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+..+|++||.||+|++|++.+..
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC--
T ss_pred CCeEEEEEcCCCeEEEEECCCCC
Confidence 66688899999999999998754
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.7e-38 Score=353.39 Aligned_cols=317 Identities=16% Similarity=0.206 Sum_probs=234.2
Q ss_pred ccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeec
Q 001190 730 TVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 809 (1128)
Q Consensus 730 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~ 809 (1128)
+.++.+.....|++.... ...|...|.+++|+|||++|++++.|. +++||- .
T Consensus 20 ~~~~g~~~~~~w~~p~~~------------p~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------~ 71 (357)
T 4g56_B 20 FQSNGSSKGSAWGRPVTA------------PACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------S 71 (357)
T ss_dssp --------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------E
T ss_pred EecCCCccccccCCCCCC------------cccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------e
Confidence 444445677888765211 134899999999999999999998753 344542 2
Q ss_pred cceeccCCCcccccc-ccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEE----EeeCCCCCeeEEEEcCCC
Q 001190 810 PQHWLPSSGLLMAND-VAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMT----TFMSPPPASTFLAFHPQD 884 (1128)
Q Consensus 810 ~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~l~~s~~d 884 (1128)
+.+|+..++...... .....|...|.+++|+|++++++++.||+|++||+.+++... ...+|...|++++|+| +
T Consensus 72 v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d 150 (357)
T 4g56_B 72 IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-D 150 (357)
T ss_dssp EEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-S
T ss_pred EEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-C
Confidence 334444444322111 111237888999999999988877679999999999887543 3447999999999999 9
Q ss_pred CCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCC
Q 001190 885 NNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP 963 (1128)
Q Consensus 885 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 963 (1128)
+++|++|+.||+|++||+.+++.+..+.+|...|++++|++++. ++++++.|+.|++||+.+++....... ....
T Consensus 151 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~----~~~~ 226 (357)
T 4g56_B 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF----CASD 226 (357)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC----TTCC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee----cccc
Confidence 99999999999999999999999999999999999999999875 789999999999999998876543322 1222
Q ss_pred CCccEEEEcCCC-CEEEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCC-CEEEEEecCCcEEEEecCCCc
Q 001190 964 TGDTRVQFNADQ-VRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDADTLR 1040 (1128)
Q Consensus 964 ~~v~~v~~s~d~-~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~t~~~dg~i~vwd~~~~~ 1040 (1128)
..+.+++|+|++ .++++++ |+.|++||+.+++.+..+..+ ...|.+++|+|++ ++|++|+.||+|+|||+++++
T Consensus 227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH---SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc---ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 678999999985 5677765 899999999999988877665 7899999999987 589999999999999999998
Q ss_pred eEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1041 LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
.+..+ +|...|.+++|+|.++.+|++|+.||+|++|++.+..
T Consensus 304 ~~~~~-------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 304 VFRDL-------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEEEC-------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EeEEC-------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 76543 3556789999999789999999999999999997653
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.8e-37 Score=342.59 Aligned_cols=297 Identities=14% Similarity=0.124 Sum_probs=239.0
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceeccccccccccccc-CccccceeccCCCcceEEEEEccCCCE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAAC-SLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
.|...|.+++|||||+ +|++|+ |+++++||..... |+.... ...........|...|.+++|+||+ .
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWL---------FKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEE---------ESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeee---------eccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 4677899999999999 777776 7888888743211 100000 0000111233467889999999985 6
Q ss_pred EEEEeCCCeEEEEEccCCCcceec-eeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeE
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~ 498 (1128)
|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|||+ +|++|+.|++|++|| .+++++..+.+|.+.|.
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 889999999999999998876543 23568999999999999999 899999999999999 89999999999999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec--CCCCeEEEEEEcCCC-CeEEEeeeccCCCceEEEEeCCCCc
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGT 575 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~~~~s~~g-~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1128)
+++|++.. ..+|++++.|++|++||+++++....+. .+...+.+++|+|++ +++++++ .|+.|++||+++++
T Consensus 174 ~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~----~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 174 CVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD----ENGTVSLVDTKSTS 248 (344)
T ss_dssp EEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE----TTSEEEEEESCC--
T ss_pred EEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec----cCCcEEEEECCCCc
Confidence 99998753 2588999999999999999888776654 445579999999965 4566666 48999999999999
Q ss_pred eeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCC-EEEEEEcCCcE
Q 001190 576 IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGF 653 (1128)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i 653 (1128)
++..+.+|.. .|.+++|+|++ ++|++|+.||.|++||+.++++.. +. +|...|.+++|+|+++ +|++++.|++|
T Consensus 249 ~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 249 CVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred EEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 9999999987 89999999998 578999999999999999998654 33 5566899999999876 67799999999
Q ss_pred EEEEcccC
Q 001190 654 KILANAIG 661 (1128)
Q Consensus 654 ~iw~~~~~ 661 (1128)
++|++.+.
T Consensus 325 ~~w~v~~~ 332 (344)
T 4gqb_B 325 VHHVVPTE 332 (344)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99998764
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-37 Score=356.09 Aligned_cols=328 Identities=14% Similarity=0.194 Sum_probs=262.4
Q ss_pred ccCCCcceEEEEEccCCC-EEEEEeCCCeEEEEEc----cCCCc------ceec-eeec------ccccceeEEEEecCC
Q 001190 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSY----AGSND------LRQH-SQID------AHVGAVNDLAFAYPN 463 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~vwd~----~~~~~------~~~~-~~~~------~h~~~v~~l~fs~d~ 463 (1128)
...|.+.|++++|+|+|+ +||+|+.||.|++||+ .+++. ...+ ..+. +|.+.|++++|+|++
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 345679999999999999 9999999999999999 88772 2211 1122 268899999999999
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCe---
Q 001190 464 KLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW--- 540 (1128)
Q Consensus 464 ~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~--- 540 (1128)
+ +|++|+.|+.|++||.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.++.....+..+...
T Consensus 121 ~--~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 121 N--SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp S--EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred C--EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 9 89999999999999988999999999999999999977 6689999999999999999988888777777665
Q ss_pred ------------EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCc
Q 001190 541 ------------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ 608 (1128)
Q Consensus 541 ------------i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~ 608 (1128)
+.+++|++++. +++++ .++.|++||+.+++.+..+..|.. .+.+++|+|++++|++++.||.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDK-FVIPG----PKGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp ---------CCCBSCCEEEETTE-EEEEC----GGGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSC
T ss_pred eeeccccCCcceeeEEEEcCCCE-EEEEc----CCCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCE
Confidence 89999999865 55555 388999999998877777766554 5666666666666666666666
Q ss_pred EEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecc
Q 001190 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1128)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 688 (1128)
|++||+.+++.+..+.
T Consensus 271 i~i~d~~~~~~~~~~~---------------------------------------------------------------- 286 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFY---------------------------------------------------------------- 286 (425)
T ss_dssp EEEECSSSBSCSEEEC----------------------------------------------------------------
T ss_pred EEEEECCCCccceEec----------------------------------------------------------------
Confidence 6666554331000000
Q ss_pred cccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEE
Q 001190 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1128)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1128)
T Consensus 287 -------------------------------------------------------------------------------- 286 (425)
T 1r5m_A 287 -------------------------------------------------------------------------------- 286 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEE
Q 001190 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (1128)
Q Consensus 769 ~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 848 (1128)
.|...|.+++|+|++ ++++
T Consensus 287 ------------------------------------------------------------~~~~~i~~~~~~~~~-~l~~ 305 (425)
T 1r5m_A 287 ------------------------------------------------------------GHSQSIVSASWVGDD-KVIS 305 (425)
T ss_dssp ------------------------------------------------------------CCSSCEEEEEEETTT-EEEE
T ss_pred ------------------------------------------------------------CCCccEEEEEECCCC-EEEE
Confidence 044557777888887 6666
Q ss_pred Ee-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce--------------------e
Q 001190 849 AT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--------------------V 907 (1128)
Q Consensus 849 ~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~ 907 (1128)
++ |+.|++||+.+++.+..+..|...|.+++|+| ++++|++++.||.|++||+.+++ .
T Consensus 306 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (425)
T 1r5m_A 306 CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL 384 (425)
T ss_dssp EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCE
T ss_pred EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchh
Confidence 66 78888888888888888888999999999999 89999999999999999999988 8
Q ss_pred eeccccccc--CeeEEEEcCCCCEEEEEcCCCcEEEEECC
Q 001190 908 KSKLKGHQK--RITGLAFSTSLNILVSSGADAQLCVWSID 945 (1128)
Q Consensus 908 ~~~l~~h~~--~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~ 945 (1128)
+..+.+|.. .|++++|+|++++|++++.||.|++||+.
T Consensus 385 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 385 YASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred hhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 899999977 99999999999999999999999999986
No 29
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-36 Score=334.18 Aligned_cols=290 Identities=18% Similarity=0.293 Sum_probs=255.0
Q ss_pred eEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
+..++ +|.+.|++++|+|+|+ +|++|+.||.|+||++.+++... .+.+|...|.+++|+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~ 74 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWS 74 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEEC
T ss_pred eEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEc
Confidence 34444 5999999999999999 78999999999999998887654 277899999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCC
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~ 494 (1128)
|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++|| .+++.+..+..|.
T Consensus 75 ~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 149 (312)
T 4ery_A 75 SDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHS 149 (312)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred CCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCC
Confidence 999999999999999999999988665 5779999999999999999 899999999999999 8899999999999
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
.+|.+++|++ ++.++++++.||.|++||+.+......+. .+...+..++|+|+++++++++ .++.|++||+.+
T Consensus 150 ~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~d~~i~iwd~~~ 223 (312)
T 4ery_A 150 DPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT----LDNTLKLWDYSK 223 (312)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE----TTTEEEEEETTT
T ss_pred CcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc----CCCeEEEEECCC
Confidence 9999999976 66899999999999999999887766554 4456899999999999999988 489999999999
Q ss_pred CceeeEeccccCCc--eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEE--c
Q 001190 574 GTIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--A 649 (1128)
Q Consensus 574 ~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--~ 649 (1128)
++.+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..+ ...|.+++|+|+++++++++ .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~~~ 301 (312)
T 4ery_A 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH--TDVVISTACHPTENIIASAALEN 301 (312)
T ss_dssp TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC--SSCEEEEEECSSSSEEEEEECTT
T ss_pred CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc--CCcEEEEeecCcCCceEEEEccC
Confidence 99999999887632 222233467889999999999999999999998888755 44799999999999999997 6
Q ss_pred CCcEEEEEcc
Q 001190 650 DNGFKILANA 659 (1128)
Q Consensus 650 dg~i~iw~~~ 659 (1128)
|+.|++|+.+
T Consensus 302 d~~i~~W~~d 311 (312)
T 4ery_A 302 DKTIKLWKSD 311 (312)
T ss_dssp TCCEEEEECC
T ss_pred CccEEEecCC
Confidence 9999999863
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-37 Score=355.02 Aligned_cols=299 Identities=14% Similarity=0.213 Sum_probs=248.9
Q ss_pred EEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEc----cCCce------ecccccccccccccCccccceeccCCCc
Q 001190 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWEL----AMRDR------LVSKPFKIWDMAACSLPFQASIFKDVPI 407 (1128)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 407 (1128)
.....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++. ...... .........+|.+
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH---------PFALSASSGKTTN 109 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC---------CCCCC------CB
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc---------cccccccccCCCC
Confidence 3344578999999999999856799999999999999 88773 211000 0000011234788
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCe
Q 001190 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1128)
Q Consensus 408 ~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~ 486 (1128)
.|++++|+|+|++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcE
Confidence 999999999999999999999999999 4555444 5778999999999999999 899999999999999 88999
Q ss_pred EEEecCCCCC---------------eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCC
Q 001190 487 LFNFEGHEAP---------------VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1128)
Q Consensus 487 ~~~~~~h~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~ 551 (1128)
+..+..+... +.+++|++. ..+++++.||.|++||+........+..+...|.+++|+|+++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 260 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK 260 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC
Confidence 9999888777 888898763 4689999999999999999888888888999999999999999
Q ss_pred eEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
++++++ .++.|++||+.+++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..
T Consensus 261 ~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~ 332 (425)
T 1r5m_A 261 LLLSAS----DDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VP 332 (425)
T ss_dssp EEEEEE----TTSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CC
T ss_pred EEEEEc----CCCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--cc
Confidence 999988 489999999999999999988876 89999999999 99999999999999999999988887654 47
Q ss_pred cceEEEcCCCCEEEEEEcCCcEEEEEcccCc
Q 001190 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
|.+++|+|++++|++++.||.|++|++.++.
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999999999999999999998763
No 31
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-36 Score=334.51 Aligned_cols=249 Identities=18% Similarity=0.306 Sum_probs=224.7
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.+|.+.|.+++|+|+|++||+|+.||+|++||+.++..++ .+.+|..+|.+++|+|+++ +|++|+.|++|++
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~v 81 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRV 81 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEE
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEE
Confidence 3588999999999999999999999999999999999987665 5778999999999999999 8999999999999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc-eeeecCCCCeEEEEEEcC-CCCeEEEe
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSA-DGSRLFSC 556 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~i~~~~~s~-~g~~l~~~ 556 (1128)
|| .+++.+..+.+|.+.|.+++|++ ++.+|++|+.||+|++||++.... ...+..|...|.+++|+| ++..++++
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 99 89999999999999999999987 568999999999999999987644 456788999999999999 67888888
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC--CCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
+ .|+.|++||+.++.....+..++...+..+.|+| ++.+|++++.|+.|++||+.+++.+..+..|. ..|.+
T Consensus 160 s----~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~ 233 (304)
T 2ynn_A 160 C----LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (304)
T ss_dssp E----TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred e----CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEE
Confidence 8 4999999999988887777766655788888886 67899999999999999999999999888654 48999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++|+|++++|++++.||+|++||..++
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999999999999998765
No 32
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-36 Score=340.39 Aligned_cols=294 Identities=17% Similarity=0.284 Sum_probs=241.8
Q ss_pred cCCCcEEEEEE-----eC-CCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 342 HQGSTVISMDF-----HP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 342 ~h~~~V~~v~f-----sp-dg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
+|.+.|++++| +| ||+ +|++|+.|++|+|||+.+++.... .......+.+|...|.+++|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~~~~~~ 85 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVSDLALS 85 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEEEEEEC
T ss_pred cchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceEEEEEC
Confidence 59999999999 77 887 889999999999999976543210 001223488999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec---C
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE---G 492 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~---~ 492 (1128)
|++.+|++|+.|++|++||+.+++.+. .+.+|...|++++|+|+++ +|++++.|++|++||..+....... +
T Consensus 86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 160 (343)
T 2xzm_R 86 QENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGECKFSSAEKEN 160 (343)
T ss_dssp SSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCEEEECCTTTS
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCceeeeecccC
Confidence 999999999999999999999988665 5789999999999999999 8999999999999995566555544 7
Q ss_pred CCCCeEEEeccCCCC--------ccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 493 HEAPVYSICPHHKEN--------IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 493 h~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++++ .|+
T Consensus 161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs----~dg 235 (343)
T 2xzm_R 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGG----KDK 235 (343)
T ss_dssp CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEE----TTC
T ss_pred CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEc----CCC
Confidence 899999999987532 268999999999999994 4455667788999999999999999999998 499
Q ss_pred eEEEEeCCC-CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeE--EEec---------CCCCCCc
Q 001190 565 FLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STDA---------EGGLPNL 632 (1128)
Q Consensus 565 ~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~---------~~~~~~v 632 (1128)
.|++||+.. ......+.. . ..+.+++|+|++.+++ ++.|+.|++||+.+++... .+.. .++...|
T Consensus 236 ~v~iwd~~~~~~~~~~~~~-~-~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 312 (343)
T 2xzm_R 236 KLLIWDILNLTYPQREFDA-G-STINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC 312 (343)
T ss_dssp EEEEEESSCCSSCSEEEEC-S-SCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCE
T ss_pred eEEEEECCCCcccceeecC-C-CcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCce
Confidence 999999944 444444432 2 2699999999988765 5568889999998876544 3321 1455578
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.+++|+|++++|++|+.||.|++|++.++
T Consensus 313 ~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 313 TSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 99999999999999999999999998765
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-36 Score=347.30 Aligned_cols=307 Identities=17% Similarity=0.255 Sum_probs=248.5
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
+...++|.+.|+|++|||||+ +||+|+ ++.++||++.+++.+.......-. ..............+...|.+++|+|
T Consensus 57 ~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred eEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECC
Confidence 445668999999999999999 778875 789999999998876431100000 00000000011123445699999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~ 495 (1128)
||++||+|+.|+.|+|||+.+++.+. .+.+|...|++++|+|+++ +|++|+.|++|++|| .+++....+. +..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 207 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED 207 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence 99999999999999999999987655 5789999999999999999 899999999999999 7888777776 566
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-------cCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-------~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
.+.+++|++. ++.+|++++.||.|++||++++.....+ ..|...|.+++|+|+|++|++++. |+.|++
T Consensus 208 ~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKL 282 (393)
T ss_dssp CEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred CcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEE
Confidence 7999999763 5689999999999999999887766555 467789999999999999999984 999999
Q ss_pred EeCCCC------------ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 569 WNESEG------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 569 wd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
||+.+. .+...+.+|.. .+.+++|++++.+|++|+.||.|++||..+++.+..+..|. ..|.+++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v~ 359 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVA 359 (393)
T ss_dssp EEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEEE
Confidence 999763 34567778876 79999999999999999999999999999999988887554 4799999
Q ss_pred EcC------CCCEEEEEEcCCcEEEEEccc
Q 001190 637 FSK------EGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 637 ~sp------~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
|++ ++++|++|+.||+|++|++..
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 876 688999999999999999864
No 34
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-36 Score=339.69 Aligned_cols=287 Identities=14% Similarity=0.175 Sum_probs=254.0
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+.+|.+.|.+++|+||+++||+|+.||+|+|||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 388999999999999999999999999999999999887655 4668999999999999999 89999999999999
Q ss_pred e-cCC------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcC--CCC
Q 001190 481 E-LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGS 551 (1128)
Q Consensus 481 d-~~g------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~--~g~ 551 (1128)
+ ..+ .....+.+|.+.|.+++|++ ++..|++++.|++|++||++++.....+..|...|.+++++| +|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 9 322 24567788999999999976 567999999999999999999999889999999999999987 578
Q ss_pred eEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
++++++. |+.|++||+++++.+..+.+|.. .|.+++|+|++.+|++++.|+.|++||+..++.+..+..+.....
T Consensus 212 ~l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 212 TFVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred EEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 9999884 89999999999999999999887 899999999999999999999999999999988877765555456
Q ss_pred cceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCC
Q 001190 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 711 (1128)
+.+++|+|++++|++|+.|+.|++||+.++.. ..
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~--------------------------------------------- 320 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-VS--------------------------------------------- 320 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EE---------------------------------------------
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCce-EE---------------------------------------------
Confidence 88999999999999999999999999866521 10
Q ss_pred cccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEee
Q 001190 712 SPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 791 (1128)
Q Consensus 712 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw 791 (1128)
.+ .+|.+.|.+++|+|+|++|++++.||.|++|
T Consensus 321 --------------------------------------------~l---~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 321 --------------------------------------------IL---FGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp --------------------------------------------EE---CCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred --------------------------------------------EE---ECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 01 2388899999999999999999999999999
Q ss_pred e
Q 001190 792 K 792 (1128)
Q Consensus 792 ~ 792 (1128)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 5
No 35
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=338.28 Aligned_cols=212 Identities=16% Similarity=0.237 Sum_probs=176.0
Q ss_pred eccCCCc-ceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 401 IFKDVPI-SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 401 ~~~~h~~-~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
.+.+|.. .|.+++|+|||++||+|+.|++|+|||+.++..........+|...|++++|+|+|+ +|++|+.|++|++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i 87 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence 4778987 999999999999999999999999999998764433323468999999999999999 8999999999999
Q ss_pred Ee-cCC--CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 480 WE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 480 Wd-~~g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
|| ..+ +.+..+.+|...|.+++|++ ++++|++++.|++|++||++.....
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~------------------------- 140 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEY------------------------- 140 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCE-------------------------
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCe-------------------------
Confidence 99 554 35678899999999999977 6689999999999999988543210
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
..+..+.+|.. .+.+++|+|++++|++++.|+.|++||..+++........++...|.+++
T Consensus 141 ------------------~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~ 201 (345)
T 3fm0_A 141 ------------------ECVSVLNSHTQ-DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201 (345)
T ss_dssp ------------------EEEEEECCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred ------------------EEEEEecCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEE
Confidence 01122334544 78889999999999999999999999998887554444445666899999
Q ss_pred EcCCCCEEEEEEcCCcEEEEEccc
Q 001190 637 FSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 637 ~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
|+|++++|++++.|++|++|+...
T Consensus 202 ~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 202 FDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEecccc
Confidence 999999999999999999999643
No 36
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=336.58 Aligned_cols=294 Identities=16% Similarity=0.223 Sum_probs=230.5
Q ss_pred eEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceec-c-CCCcceEEEE
Q 001190 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF-K-DVPISVSRVA 413 (1128)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~l~ 413 (1128)
+...+ +|.+.|++++|+|+ +||+|+.|++|+|||+.++.... . ..+ . +|...|.+++
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~----------------~-~~~~~~~h~~~v~~v~ 65 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTL----------------I-DVLDETAHKKAIRSVA 65 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEE----------------E-EEECTTCCCSCEEEEE
T ss_pred cceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEE----------------E-EEEecCCccCCEEEEE
Confidence 34444 49999999999998 68999999999999998753211 0 113 3 4999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCC----cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEec-CC----
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSN----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SG---- 484 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~----~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~-~g---- 484 (1128)
|+|++++||+|+.|++|+|||+..+. .......+.+|.+.|++++|+|+|+ +|++|+.|++|++||. .+
T Consensus 66 ~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCC
T ss_pred ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCe
Confidence 99999999999999999999996432 1223346789999999999999999 8999999999999993 32
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC--CceeeecCCCCeEEEEEEcCC--CCeEEEeeecc
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSAD--GSRLFSCGTSK 560 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~i~~~~~s~~--g~~l~~~~~~~ 560 (1128)
+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +.+|++++
T Consensus 144 ~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--- 218 (330)
T 2hes_X 144 ECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--- 218 (330)
T ss_dssp EEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE---
T ss_pred EEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe---
Confidence 45678899999999999987 5689999999999999998765 455678889999999999999 67888887
Q ss_pred CCCceEEEEeCCCC--------ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee--eEEEecCCCCC
Q 001190 561 DGDSFLVEWNESEG--------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLP 630 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~ 630 (1128)
.|+.|++||+.++ .....+.+.+...|.+++|++++ .|++++.||.|++|+..+++. .... ..++..
T Consensus 219 -~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~ 295 (330)
T 2hes_X 219 -DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGV 295 (330)
T ss_dssp -TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTT
T ss_pred -CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccccc
Confidence 4899999998765 34555555334489999999654 899999999999999988753 2222 233444
Q ss_pred -CcceEEEcC--CCCEEEEEEcCCcEEEEEccc
Q 001190 631 -NLPRLRFSK--EGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 631 -~v~~v~~sp--~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
.|.+++|+| ++++|++|+.||+|++|++..
T Consensus 296 ~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 296 YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 789999999 789999999999999999764
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-37 Score=361.16 Aligned_cols=295 Identities=16% Similarity=0.270 Sum_probs=247.6
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEe----------eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVG----------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~g----------s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1128)
+.+...|.+++|+|+|+.+|++| +.|+.|+|||+.+++.... .....|...|.
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~ 71 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFN 71 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEE
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceE
Confidence 34556799999999998789999 8899999999988763210 01335889999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEccCCCc-ceeceeecccccceeEEEEecC-CCeEEEEEecCCCeEEEEe-cCCC--
Q 001190 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR-- 485 (1128)
Q Consensus 411 ~l~~spdg~~las~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~fs~d-~~~~~l~s~s~d~~i~vWd-~~g~-- 485 (1128)
+++|+|++++|++|+.||.|++||+.+... ......+.+|...|++++|+|+ +. +|++++.|+.|++|| .+++
T Consensus 72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~ 149 (416)
T 2pm9_A 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTES 149 (416)
T ss_dssp EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSC
T ss_pred EEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccc
Confidence 999999999999999999999999987211 1122357799999999999998 67 799999999999999 6665
Q ss_pred ----eEE---EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC------CCeEEEEEEcCCC-C
Q 001190 486 ----KLF---NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADG-S 551 (1128)
Q Consensus 486 ----~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~~~i~~~~~s~~g-~ 551 (1128)
... .+.+|...|.+++|+++ .+.+|++++.||.|++||++..+....+..+ ...+.+++|+|++ .
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 150 PSNYTPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp TTTCCCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred cccccccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 332 34679999999999874 2579999999999999999998888777776 6789999999998 4
Q ss_pred eEEEeeeccCCCc---eEEEEeCCCC-ceeeEec-cccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 552 RLFSCGTSKDGDS---FLVEWNESEG-TIKRTYA-GFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 552 ~l~~~~~~~~~~~---~i~~wd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
++++++. ++ .|++||++++ +.+..+. +|.. .+.+++|+| ++++|++++.||.|++||+.+++.+..+..
T Consensus 229 ~l~~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 229 RVATATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp EEEEEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred EEEEEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence 6777663 55 9999999987 6677777 7766 899999999 899999999999999999999999988886
Q ss_pred CCCCCCcceEEEcCCC-CEEEEEEcCCcEEEEEcccCc
Q 001190 626 EGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 626 ~~~~~~v~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
+. ..|.+++|+|++ .+|++++.|+.|++|++.+..
T Consensus 304 ~~--~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 304 RG--NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp SS--SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred CC--CceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 54 479999999998 899999999999999998763
No 38
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.9e-35 Score=381.25 Aligned_cols=554 Identities=13% Similarity=0.077 Sum_probs=393.4
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+...+.+.+|||+ .||..+. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~---~iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD---RIIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT---EEEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC---EEEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4567999999964 3455443 789999998876432 677999999999999999999
Q ss_pred EEeCC------CeEEEEEccCCCcceeceeecccccce-------eEEEEecCCCeEEEEEecCC------CeEEEEecC
Q 001190 423 VAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAV-------NDLAFAYPNKLLCVVTCGDD------KLIKVWELS 483 (1128)
Q Consensus 423 s~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v-------~~l~fs~d~~~~~l~s~s~d------~~i~vWd~~ 483 (1128)
+++.+ ..|++||+.+++. + .+..|...+ ..++|+|||+ ++++++.+ ..|.+||..
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 3799999998763 2 477888888 9999999998 67777754 468888844
Q ss_pred CCeEEEecCCCCCeEEEeccCCCCccEEEEEec------------cCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCC
Q 001190 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI------------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1128)
Q Consensus 484 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~ 551 (1128)
+.....+..+. ...++|++ | ++++++. +...++|.....+....+..+...+.++.|+++ .
T Consensus 143 ~g~~~~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 143 GINFVPLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp GTEEEECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E
T ss_pred CCCeEEecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E
Confidence 44445554443 34566765 5 7887653 345677755444555566788889999999988 3
Q ss_pred eEEEeeeccCCCceEEEEeCCC-CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCC---
Q 001190 552 RLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG--- 627 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~--- 627 (1128)
.++++. .++.+.+|.+.. +.....+..+. .+...+|+|+|++|+++ .++.|++|++...... .+..+.
T Consensus 216 l~~~~~----~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~ 287 (1045)
T 1k32_A 216 IYFITD----IDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLES 287 (1045)
T ss_dssp EEEEEC----TTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCB
T ss_pred EEEEEe----ccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccc
Confidence 334433 356667776543 34445555554 35667999999998887 4899999999554433 443221
Q ss_pred ------CCCCcceEEEc-CCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCc
Q 001190 628 ------GLPNLPRLRFS-KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1128)
Q Consensus 628 ------~~~~v~~v~~s-p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 700 (1128)
+...+..++|+ |||+.|++++ ++.|++|+..++.. . .+
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-~-~~-------------------------------- 332 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-L-KV-------------------------------- 332 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-E-EC--------------------------------
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-E-Ec--------------------------------
Confidence 12258899999 9999999888 78899998765410 0 00
Q ss_pred ceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcc-cEEEEEEecCcceE
Q 001190 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSS-KVVRLLYTNSAVGL 779 (1128)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l 779 (1128)
..+.. .+..++|+ ||+.+
T Consensus 333 ------------------------------------------------------------~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 333 ------------------------------------------------------------PEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp ------------------------------------------------------------SCCSCEEEEEECSS-SEEEE
T ss_pred ------------------------------------------------------------cCCCcceEEeeeEc-CCCeE
Confidence 01344 67888999 99989
Q ss_pred EEeeccceeE-eeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEE
Q 001190 780 LALGSNGVQK-LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 857 (1128)
Q Consensus 780 ~~~~~dg~i~-lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vw 857 (1128)
+.++.++.+. +|++.. +.... +.+ +...+..++|||||++|++++ ++.|++|
T Consensus 352 ~~~s~~~~l~~~~d~~~----------------------~~~~~--l~~--~~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRT----------------------GKAEK--FEE--NLGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp EEEETTEEEEEEEETTT----------------------CCEEE--CCC--CCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEECCCceEEEEECCC----------------------CCceE--ecC--CccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 8888877676 776432 22111 112 667899999999999999988 7899999
Q ss_pred ECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC----------cEEEEecccceeeecccccccCeeEEEEcCCC
Q 001190 858 NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS----------TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL 927 (1128)
Q Consensus 858 d~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 927 (1128)
|+.+++....+.+|...+.+++||| ||++|++++.++ .|++||+.+++ ...+..|...+..++|+|||
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG 483 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS 483 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS
T ss_pred ECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC
Confidence 9999998888878999999999999 999998887654 89999999887 66788888889999999999
Q ss_pred CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE--EEEe--cCeEEEEecCCcc-ccccccc
Q 001190 928 NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM--LVVH--ETQLAIYDASKME-RIRQWTP 1002 (1128)
Q Consensus 928 ~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l--~~~~--d~~i~v~d~~~~~-~~~~~~~ 1002 (1128)
++|++++.++...+|+....... .. + ...+..+.+++++... +... +.....|++.... .+..+..
T Consensus 484 ~~l~~~s~~~~~~~~~~~~~~~~------~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~ 554 (1045)
T 1k32_A 484 KNLYYLSYRSLDPSPDRVVLNFS------FE--V-VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV 554 (1045)
T ss_dssp CEEEEEESCCCCCEECSSSSCEE------CC--S-CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC
T ss_pred CEEEEEecccCCcCcchhccccc------cc--c-CceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCC
Confidence 99999999999999987643210 00 0 1223344445444332 2211 1111235544311 1222222
Q ss_pred CCCCCCCeEEEEEeeCCCEEEE-------------EecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEE
Q 001190 1003 QDALSAPISCAVYSCNSQLVFA-------------TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1069 (1128)
Q Consensus 1003 ~~~h~~~v~~l~~s~dg~~l~t-------------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1128)
|...+..++++|||+++++ ......|++||+.+++..... ..+..++|
T Consensus 555 ---~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----------------~~v~~~~~ 615 (1045)
T 1k32_A 555 ---DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----------------NNLTDLRL 615 (1045)
T ss_dssp ---CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----------------EEEEEEEE
T ss_pred ---CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee----------------cCcceEEE
Confidence 3678999999999997775 123557899999998854322 23467899
Q ss_pred ecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1070 HPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1070 ~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+| |+..|++++.| .|++||+.+++
T Consensus 616 S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 616 SA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred CC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 99 79999998876 89999998876
No 39
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.2e-37 Score=348.88 Aligned_cols=295 Identities=17% Similarity=0.196 Sum_probs=251.9
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++... .+.+|...|.+++|+|+|+ +|++|+.|+.|++|
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw 135 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIF 135 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEE
Confidence 488999999999999999999999999999999999987665 5789999999999999999 89999999999999
Q ss_pred e-cCC-------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-----cCCCCeEEEEEEc
Q 001190 481 E-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-----DAPGHWCTTMLYS 547 (1128)
Q Consensus 481 d-~~g-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-----~~~~~~i~~~~~s 547 (1128)
| .++ .....+.+|.+.|.++.|.+.. +..|++|+.|++|++||+.++.....+ ..|...|.+++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9 432 1345688999999999998753 457999999999999999998877666 5677799999998
Q ss_pred C-CCCeEEEeeeccCCCceEEEEeCC-CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 548 A-DGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 548 ~-~g~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
+ ++.++++++ .|+.|++||++ .++.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+..
T Consensus 215 ~~~~~~l~sgs----~D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 215 SLNANMFISGS----CDTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp SSSCCEEEEEE----TTSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred cCCCCEEEEEE----CCCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 7 788899888 49999999998 5578888999887 899999999999999999999999999999998887754
Q ss_pred CCC-----CCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCc
Q 001190 626 EGG-----LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1128)
Q Consensus 626 ~~~-----~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 700 (1128)
+.. ...|.+++|+|+|++|++|+.||.|++||..++.... .+..
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~-~~~~------------------------------ 338 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL-NLGT------------------------------ 338 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE-EECC------------------------------
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE-EEec------------------------------
Confidence 322 2248999999999999999999999999986652111 0000
Q ss_pred ceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEE
Q 001190 701 CKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 780 (1128)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 780 (1128)
...+|.+.|.+++|+|+|.+|+
T Consensus 339 ----------------------------------------------------------~~~~h~~~v~~l~~s~dg~~l~ 360 (380)
T 3iz6_a 339 ----------------------------------------------------------LQNSHEGRISCLGLSSDGSALC 360 (380)
T ss_dssp ----------------------------------------------------------SCSSCCCCCCEEEECSSSSEEE
T ss_pred ----------------------------------------------------------ccCCCCCceEEEEECCCCCEEE
Confidence 0023888999999999999999
Q ss_pred EeeccceeEeeeccc
Q 001190 781 ALGSNGVQKLWKWHR 795 (1128)
Q Consensus 781 ~~~~dg~i~lw~~~~ 795 (1128)
+++.||.|++|++..
T Consensus 361 sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 361 TGSWDKNLKIWAFSG 375 (380)
T ss_dssp EECTTSCEEEEECCS
T ss_pred EeeCCCCEEEEecCC
Confidence 999999999998753
No 40
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6e-36 Score=335.75 Aligned_cols=302 Identities=22% Similarity=0.307 Sum_probs=257.8
Q ss_pred cceEEeec-CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE
Q 001190 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1128)
Q Consensus 335 ~~~~~~~~-h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 413 (1128)
..+..+|. |.+.|++|+|+|++..+||||+.|++|+|||+.+++.... .+...+.+|...|.+++
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~~ 93 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDVV 93 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEEE
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEEE
Confidence 34455564 9999999999998544899999999999999987654321 12235889999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-CeEEEec
Q 001190 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFE 491 (1128)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g-~~~~~~~ 491 (1128)
|+|||++|++|+.|+.|++|+...+.... ....+...+..+.+++++. +|++|+.|+.+++|| ... .....+.
T Consensus 94 ~s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~ 168 (340)
T 4aow_A 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDE 168 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred ECCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEec
Confidence 99999999999999999999999876554 4567888999999999999 799999999999999 333 3345567
Q ss_pred CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
+|...+..++|++.....++++++.|+.|++||++.......+..|...|.+++|+|++++|++++. |+.|++||+
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~ 244 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDL 244 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEET
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEe
Confidence 8999999999998877789999999999999999999888899999999999999999999999984 999999999
Q ss_pred CCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec-------CCCCCCcceEEEcCCCCEE
Q 001190 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-------EGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~sp~~~~l 644 (1128)
.+++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+.. ..+...|.+++|+|++++|
T Consensus 245 ~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 321 (340)
T 4aow_A 245 NEGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL 321 (340)
T ss_dssp TTTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEE
T ss_pred ccCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEE
Confidence 9999998888764 688999999865 56677899999999999887766542 2456689999999999999
Q ss_pred EEEEcCCcEEEEEcccCc
Q 001190 645 AVTTADNGFKILANAIGL 662 (1128)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~ 662 (1128)
++|+.||.|+|||+.+|.
T Consensus 322 ~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 322 FAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEETTSCEEEEEEEC--
T ss_pred EEEeCCCEEEEEeCCCcC
Confidence 999999999999999874
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-37 Score=358.11 Aligned_cols=336 Identities=12% Similarity=0.143 Sum_probs=264.1
Q ss_pred CcceEEEEEccCCC-EEEEE----------eCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC
Q 001190 406 PISVSRVAWSPDGN-YVGVA----------FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1128)
Q Consensus 406 ~~~V~~l~~spdg~-~las~----------~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d 474 (1128)
...|.+++|+|+|+ +||+| +.|+.|+|||+.+++....... ..|...|++++|+|+++ +|++|+.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~--~l~~~~~d 88 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNK--IIAGALDN 88 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSS--CEEEEESS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCC--eEEEEccC
Confidence 34788999999997 99999 8899999999998764322222 36899999999999999 79999999
Q ss_pred CeEEEEe-cC----CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC------ceee---ecCCCCe
Q 001190 475 KLIKVWE-LS----GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG------SRVD---YDAPGHW 540 (1128)
Q Consensus 475 ~~i~vWd-~~----g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~------~~~~---~~~~~~~ 540 (1128)
+.|++|| .+ .+.+..+.+|...|.+++|+++ ++.+|++++.||.|++||+.... .... ...+...
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 9999999 44 3588899999999999999874 25799999999999999998876 3322 2456667
Q ss_pred EEEEEEcCC-CCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee
Q 001190 541 CTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1128)
Q Consensus 541 i~~~~~s~~-g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 619 (1128)
|.+++|+|+ +.++++++ .++.|++||+.+++.+..+..+...
T Consensus 168 v~~~~~~~~~~~~l~~~~----~dg~v~iwd~~~~~~~~~~~~~~~~--------------------------------- 210 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAG----SSNFASIWDLKAKKEVIHLSYTSPN--------------------------------- 210 (416)
T ss_dssp CCEEEECSSCTTEEEEES----SSSCEEEEETTTTEEEEEECCCCCS---------------------------------
T ss_pred eeEEEeCCCCCcEEEEEc----CCCCEEEEECCCCCcceEEeccccc---------------------------------
Confidence 888888887 55666655 3666777777666655555443220
Q ss_pred eEEEecCCCCCCcceEEEcCCC-CEEEEEEcCC---cEEEEEcccCccccccccCCccccccCcceeeeeeccccccccc
Q 001190 620 LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1128)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~~-~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 695 (1128)
.++...|.+++|+|++ .++++++.|+ .|++||+.++......
T Consensus 211 ------~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~---------------------------- 256 (416)
T 2pm9_A 211 ------SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT---------------------------- 256 (416)
T ss_dssp ------SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC----------------------------
T ss_pred ------cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE----------------------------
Confidence 1224478999999986 6889999888 8999987654111000
Q ss_pred CCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecC
Q 001190 696 GTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS 775 (1128)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 775 (1128)
T Consensus 257 -------------------------------------------------------------------------------- 256 (416)
T 2pm9_A 257 -------------------------------------------------------------------------------- 256 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc-CCCeEEEEe-CCe
Q 001190 776 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGK 853 (1128)
Q Consensus 776 g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~-dg~ 853 (1128)
+. ..|...|.+++|+| ++++|++++ ||.
T Consensus 257 -------------------------------------------------~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~ 286 (416)
T 2pm9_A 257 -------------------------------------------------LN-QGHQKGILSLDWCHQDEHLLLSSGRDNT 286 (416)
T ss_dssp -------------------------------------------------CC-SCCSSCEEEEEECSSCSSCEEEEESSSE
T ss_pred -------------------------------------------------ee-cCccCceeEEEeCCCCCCeEEEEeCCCC
Confidence 00 01566788888888 888888887 889
Q ss_pred EEEEECCCceEEEEeeCCCCCeeEEEEcCCCC-CEEEEEeCCCcEEEEecccceeeecccc-------------------
Q 001190 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN-NIIAIGTEDSTIHIYNVRVDEVKSKLKG------------------- 913 (1128)
Q Consensus 854 i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~-~~lasg~~dg~v~iwd~~~~~~~~~l~~------------------- 913 (1128)
|++||+.+++.+..+.+|...|.+++|+| ++ .+|++++.||.|++|++.+++.......
T Consensus 287 v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (416)
T 2pm9_A 287 VLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSRE 365 (416)
T ss_dssp EEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC---------------------
T ss_pred EEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccc
Confidence 99999999999999999999999999999 66 8999999999999999987754433211
Q ss_pred ----------------cccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCC
Q 001190 914 ----------------HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 947 (1128)
Q Consensus 914 ----------------h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~ 947 (1128)
|..++.+++|+|||++|++++.|+.|+||++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 366 ESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 6778889999999999999999999999999874
No 42
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-35 Score=328.99 Aligned_cols=247 Identities=19% Similarity=0.309 Sum_probs=219.1
Q ss_pred eccCCCcceEEEEEccCC-CEEEEEeCCCeEEEEEccCCCcc--eeceeecccccceeEEEEecCCCeEEEEEecCCCeE
Q 001190 401 IFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i 477 (1128)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|++++|+|+|+ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 488999999999999965 89999999999999999754321 22346889999999999999999 89999999999
Q ss_pred EEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCC------C
Q 001190 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD------G 550 (1128)
Q Consensus 478 ~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~------g 550 (1128)
++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++ ......+..|...|.++.++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999 89999999999999999999976 66899999999999999996 4566678888899999999985 4
Q ss_pred CeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCC
Q 001190 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
..+++++ .|+.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+ .
T Consensus 167 ~~l~s~~----~d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~ 238 (319)
T 3frx_A 167 VTIISAG----NDKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---D 238 (319)
T ss_dssp CEEEEEE----TTSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---S
T ss_pred cEEEEEe----CCCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---C
Confidence 4788887 499999999999999999999987 8999999999999999999999999999999998888754 3
Q ss_pred CcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.|.+++|+|++.++++++.+ .+++|++...
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 69999999999999988754 5999998764
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7e-36 Score=334.75 Aligned_cols=285 Identities=14% Similarity=0.155 Sum_probs=243.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
|.+.|.+++|+|||+ +++++..++.+.+|......... ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 567899999999999 66777666666666443322221 2457999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeec--ccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC--eEEEecCCCCCe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPV 497 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~--~~~~~~~h~~~v 497 (1128)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ +|++++.|+.|++|| .+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 999 9999999999887655444444 7999999999999999 899999999999999 6666 567788999999
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
.+++|++ +++++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++ .++.|++||+.+++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG----LDNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe----cCCcEEEEECCCCceE
Confidence 9999977 668999999999999999999888888888999999999999999999988 4899999999999988
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
..+.. . ..+.+++|+|+++++++++.||.|++||+.+++... +. .+...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~-~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-T-SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-S-SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-C-CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec--CCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 87753 3 368999999999999999999999999999887643 33 4455899999999999999999999999999
Q ss_pred cccC
Q 001190 658 NAIG 661 (1128)
Q Consensus 658 ~~~~ 661 (1128)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8765
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.7e-35 Score=324.52 Aligned_cols=251 Identities=21% Similarity=0.324 Sum_probs=225.3
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.+|...|++++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~v 91 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKI 91 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEE
Confidence 3578999999999999999999999999999999999887655 5779999999999999999 8999999999999
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+++......+..|...|.+++|+|+++++++++.
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 99 88999999999999999999977 5689999999999999999999888889889999999999999999999884
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
++.|++||+.+++.+..+..+....+..++|+|++++|++++.||.|++||+.+++.+..+..+..........++
T Consensus 170 ----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 170 ----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp ----TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred ----CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 8999999999999888887666668999999999999999999999999999999998888765543222333444
Q ss_pred -CCCCEEEEEEcCCcEEEEEcccC
Q 001190 639 -KEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 639 -p~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++.+|++|+.||.|++||+.++
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTC
T ss_pred eCCCcEEEEECCCCEEEEEECCCc
Confidence 67899999999999999998765
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.9e-36 Score=346.19 Aligned_cols=282 Identities=15% Similarity=0.140 Sum_probs=237.9
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
.+++++|+|+|+ +|++|+.|+.|++||+.+++.... +.+| ..+...+|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 455899999999 578999999999999988765432 4445 4555668899999999999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccC
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~ 504 (1128)
.||.|++||+.+++... .+.+|.+.|++++|+|+++ +|++|+.|++|++|| .+++.+..+.+|...|.+++|++
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999887654 4679999999999999999 899999999999999 88999999999999999999977
Q ss_pred CCCccEEEEEeccCcEEEEecCCCCceeeecCC---CCeEEE---------------------EEEcCCCCeEEEeeecc
Q 001190 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTT---------------------MLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 505 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---~~~i~~---------------------~~~s~~g~~l~~~~~~~ 560 (1128)
++.+|++++.||.|++||+++++....+..+ ...+.+ ++|+|+|+++++++
T Consensus 192 --~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--- 266 (420)
T 3vl1_A 192 --RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH--- 266 (420)
T ss_dssp --TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE---
T ss_pred --CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc---
Confidence 6689999999999999999988877776642 334444 44578999999987
Q ss_pred CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCC-EEEEEECCCcEEEEECCCCee-eEEEecCCCCCCcceEEEc
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s 638 (1128)
.++.|++||+.+++.+..+...+...+.+++|+|++. +|++++.||.|++||+.+++. +..+..+ +...|.++.+
T Consensus 267 -~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~- 343 (420)
T 3vl1_A 267 -VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYF- 343 (420)
T ss_dssp -TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEE-
T ss_pred -CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEe-
Confidence 4899999999999988888765555899999999998 999999999999999998754 5666543 2336777755
Q ss_pred CCCCEEEEEEcCCcEEEEEcccC
Q 001190 639 KEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++++|++++.|+.|++|++...
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.7e-35 Score=340.11 Aligned_cols=344 Identities=9% Similarity=0.094 Sum_probs=276.5
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~ 485 (1128)
..+++++|+|+|++|++|+.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++|| .+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345689999999999999999999999999877654 34455 4455567899999 899999999999999 7788
Q ss_pred eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCce
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 565 (1128)
....+.+|.+.|.+++|++ ++.+|++++.||.|++||+++.+....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 8888889999999999987 5689999999999999999999988899999999999999999999999884 899
Q ss_pred EEEEeCCCCceeeEecccc--CCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCE
Q 001190 566 LVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 566 i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 643 (1128)
|++||+.+++.+..+..+. ...+.++++.+.+... ... .+...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCE
Confidence 9999999999999988643 2356777776543221 011 12346889999999999
Q ss_pred EEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCC
Q 001190 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSR 723 (1128)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1128)
|++++.||.|++||+.++......
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------------------------- 285 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQL-------------------------------------------------------- 285 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEE--------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEEc--------------------------------------------------------
Confidence 999999999999998654110000
Q ss_pred CCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCc
Q 001190 724 SMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (1128)
Q Consensus 724 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~ 803 (1128)
T Consensus 286 -------------------------------------------------------------------------------- 285 (420)
T 3vl1_A 286 -------------------------------------------------------------------------------- 285 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCC-eEEEEe-CCeEEEEECCCceE-EEEeeC-CCCCeeEEE
Q 001190 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFKV-MTTFMS-PPPASTFLA 879 (1128)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~la~~~-dg~i~vwd~~~~~~-~~~~~~-~~~~v~~l~ 879 (1128)
.. .|...|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...|.++.
T Consensus 286 ---------------------~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 342 (420)
T 3vl1_A 286 ---------------------PS--KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY 342 (420)
T ss_dssp ---------------------CC--TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE
T ss_pred ---------------------cc--ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE
Confidence 00 1556677888888887 777777 78888888887643 566665 666788886
Q ss_pred EcCCCCCEEEEEeCCCcEEEEecccc---------eeeecccccccCeeEEEEcCCCC---EEEEEcCCCcEEEEECCC
Q 001190 880 FHPQDNNIIAIGTEDSTIHIYNVRVD---------EVKSKLKGHQKRITGLAFSTSLN---ILVSSGADAQLCVWSIDT 946 (1128)
Q Consensus 880 ~s~~d~~~lasg~~dg~v~iwd~~~~---------~~~~~l~~h~~~V~~l~~s~d~~---~l~s~~~Dg~i~iwd~~~ 946 (1128)
+. ++++|++++.||.|++|++... .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 343 ~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 343 FA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred eC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 54 6789999999999999998863 12234567889999999999999 788888899999999875
No 47
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.6e-35 Score=359.57 Aligned_cols=293 Identities=20% Similarity=0.299 Sum_probs=250.7
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
-+|.+.|++++|+|++..+|++|+.|++|+|||+.++..... .....+.+|...|.+++|+|+|++
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g~~ 444 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDGQF 444 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTSSE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCCCE
Confidence 359999999999998766899999999999999987543211 012348899999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEe----cCCCCC
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGHEAP 496 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~----~~h~~~ 496 (1128)
|++|+.||+|+|||+.++..++ .+.+|...|.+++|+|+++ +|+||+.|++|++||..+.....+ .+|...
T Consensus 445 l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~ 519 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519 (694)
T ss_dssp EEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred EEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence 9999999999999999987665 5789999999999999999 799999999999999555554443 478999
Q ss_pred eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce
Q 001190 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1128)
|.+++|+++.....+++++.|++|++||++.......+..|...|.+++|+|+|++|++++. |+.|++||+.+++.
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGKK 595 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTEE
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCce
Confidence 99999988665578999999999999999998888899999999999999999999999984 99999999999998
Q ss_pred eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC-----------------CCCcceEEEcC
Q 001190 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-----------------LPNLPRLRFSK 639 (1128)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~v~~sp 639 (1128)
+..+..+. .+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+++|+|
T Consensus 596 ~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp 672 (694)
T 3dm0_A 596 LYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672 (694)
T ss_dssp EECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT
T ss_pred EEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC
Confidence 88776543 699999999988777665 56699999999998877643211 11367899999
Q ss_pred CCCEEEEEEcCCcEEEEEcc
Q 001190 640 EGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~ 659 (1128)
+|++|++|+.||.|++|++.
T Consensus 673 dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 673 DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TSSEEEEEETTSEEEEEEC-
T ss_pred CCCEEEEEcCCCeEEEEecc
Confidence 99999999999999999974
No 48
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.4e-34 Score=320.95 Aligned_cols=247 Identities=20% Similarity=0.313 Sum_probs=208.7
Q ss_pred eeccCCCcceEEEEE-----cc-CCCEEEEEeCCCeEEEEEccCCCcc----eeceeecccccceeEEEEecCCCeEEEE
Q 001190 400 SIFKDVPISVSRVAW-----SP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVV 469 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~fs~d~~~~~l~ 469 (1128)
..+.+|.+.|++++| +| |+++||+|+.|++|++||+.+++.. .....+.+|...|++++|+|++. +++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~ 92 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAI 92 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEE
Confidence 358899999999999 77 9999999999999999999865421 22336789999999999999999 899
Q ss_pred EecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec---CCCCeEEEEE
Q 001190 470 TCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTML 545 (1128)
Q Consensus 470 s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~~~ 545 (1128)
+|+.|++|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+.. ....... .+...|.+++
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeee
Confidence 999999999999 88999999999999999999977 668999999999999999973 3333322 5677899999
Q ss_pred EcCCC----------CeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECC
Q 001190 546 YSADG----------SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1128)
Q Consensus 546 ~s~~g----------~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 615 (1128)
|+|++ .++++++ .|+.|++|| ..++....+.+|.. .+.+++|+|++++|++|+.||.|++||+.
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVG----WDGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEE----TTSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred eccccccccccCCCCCEEEEEc----CCCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 99987 6788887 499999999 45677778888876 89999999999999999999999999994
Q ss_pred -CCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 616 -NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 616 -~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.......+.. + ..|.+++|+|++.+++++ .|+.|++|++.++
T Consensus 244 ~~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 244 NLTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp CCSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CCcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 4444444432 2 269999999999888765 5778999998765
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.3e-34 Score=321.05 Aligned_cols=282 Identities=12% Similarity=0.190 Sum_probs=242.2
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
|...|.+++|+|+++++++++ ||.+++|++........ . ..+....|...|.+++|+|+
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~------------------~--~~~~~~~~~~~v~~~~~~~~ 108 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP------------------V--SQLDCLNRDNYIRSCKLLPD 108 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC------------------S--EEEECSCTTSBEEEEEECTT
T ss_pred CCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee------------------e--ecccccCCCCcEEEEEEcCC
Confidence 899999999999999999998 99999999764321000 0 01111127889999999999
Q ss_pred CCeEEEEe-CCeEEEEECCCce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCee
Q 001190 843 DSYVMSAT-GGKISLFNMMTFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 919 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 919 (1128)
+++|++++ |+.|++||+.+++ ....+..|...|.+++|+| +++++++++.||.|++||+.+++.+..+.+|...|.
T Consensus 109 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~ 187 (337)
T 1gxr_A 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 187 (337)
T ss_dssp SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceE
Confidence 99999998 8999999999887 6677888999999999999 899999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccc
Q 001190 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 920 ~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
+++|+|++++|++++.|+.|++||+.+++....... ...+..++|+|++.+++++. ++.|++||+.+++...
T Consensus 188 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~ 260 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred EEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-------CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE
Confidence 999999999999999999999999999876544322 26789999999999999976 8999999999877543
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
+. .|...|.+++|+||+++|++++.||.|++||+.+++.+.... +...+.+++|+| ++++|+
T Consensus 261 -~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~-~~~~l~ 322 (337)
T 1gxr_A 261 -LH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-------------ESSSVLSCDISV-DDKYIV 322 (337)
T ss_dssp -EC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------------CSSCEEEEEECT-TSCEEE
T ss_pred -Ec---CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-------------CCCcEEEEEECC-CCCEEE
Confidence 22 348899999999999999999999999999999998875543 345678999999 689999
Q ss_pred EEECCCcEEEEcC
Q 001190 1079 IGLTDGSVKVMEP 1091 (1128)
Q Consensus 1079 s~~~dg~i~iWd~ 1091 (1128)
+++.||.|++|++
T Consensus 323 ~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 323 TGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSCEEEEEE
T ss_pred EecCCCeEEEEEE
Confidence 9999999999986
No 50
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-34 Score=331.06 Aligned_cols=290 Identities=13% Similarity=0.183 Sum_probs=243.2
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCC
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 419 (1128)
.+|.+.|++++|+|+|..+|++|+.||.|+|||+.+++.... ....+|...|.+++|+| ++.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------~~~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----------------IQGMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------ECCCSTTCBEEEEEEETTEEE
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------eecCCcCCceeEEEeCCCCCC
Confidence 359999999999999933889999999999999998776532 11357999999999999 789
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEE
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~ 499 (1128)
+|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||.+++.+..+.+|...|.+
T Consensus 133 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp EEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEETTSCEEEEEECSSSCEEE
T ss_pred EEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEECCCCEEEEeccCCCcEEE
Confidence 999999999999999996 44444333345668999999999999 899999999999999889999999999999999
Q ss_pred EeccCCCCcc-EEEEEeccCcEEEEecCC----CCceeeecCCCCeEEEEEEcC-CCCeEEEeeeccCCCceEEEEeCCC
Q 001190 500 ICPHHKENIQ-FIFSTAIDGKIKAWLYDT----MGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 500 ~~~~~~~~~~-~l~s~~~dg~i~~wd~~~----~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
++|++ ++. ++++++.|+.|++||++. ......+ .+...|.+++|+| ++++|++++. ++.|++||+.+
T Consensus 210 ~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~~ 282 (383)
T 3ei3_B 210 AEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSYD 282 (383)
T ss_dssp EEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEEEETTB
T ss_pred EEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECCC
Confidence 99987 456 999999999999999987 3333344 6888999999999 9999999884 89999999999
Q ss_pred CceeeEeccccC----------------CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE
Q 001190 574 GTIKRTYAGFRK----------------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1128)
Q Consensus 574 ~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1128)
++....+.+|.. ..+..++|+|++++ +++.||.|++||+.+++.+..+..+.+...+.+++|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~ 360 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF 360 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE
T ss_pred CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE
Confidence 988877775532 12333555666655 667899999999999999999987665557788899
Q ss_pred cCCCCEEEEEEcCCcEEEEEccc
Q 001190 638 SKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 638 sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
+|++++|++++ |+.|++|++++
T Consensus 361 s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 361 SPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTTSSEEEEEE-TTEEEEEECC-
T ss_pred ecCccEEEEec-CCcEEEEecCC
Confidence 99999999997 99999999864
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=345.04 Aligned_cols=382 Identities=11% Similarity=0.123 Sum_probs=277.2
Q ss_pred EEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEEEEEeCCCe
Q 001190 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAFTKHL 429 (1128)
Q Consensus 351 ~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~ 429 (1128)
.|+|+++ .+++++ .|+. +++.+.. +..+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~-~~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQE-IVRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCC-CCCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCccc-cccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 4788888 456543 3773 3554432 2388999999999999 9999999999999
Q ss_pred EEEEEccC---CCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c---CCCeEEEecCCCCCeEEEec
Q 001190 430 IQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---SGRKLFNFEGHEAPVYSICP 502 (1128)
Q Consensus 430 i~vwd~~~---~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~---~g~~~~~~~~h~~~v~~~~~ 502 (1128)
|+|||+.+ +...+....+ +|.+.|++++|+|+++ +|++|+.|++|++|| . +++.+..+.+| .+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~ 162 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINL 162 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEc
Confidence 99999987 5533322223 5999999999999999 899999999999999 3 67777777666 6777777
Q ss_pred cCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEE--EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML--YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~--~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
++.+ +...+.++. +++++.++++++ .++.|++||+++++.+..+
T Consensus 163 ~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 163 KNFG------------------------------KNEYAVRMRAFVNEEKSLLVALT----NLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp GGGS------------------------------SCCCEEEEEEEECSSCEEEEEEE----TTSEEEEEETTTCCEEEEE
T ss_pred cCcc------------------------------cccCceEEEEEEcCCCCEEEEEe----CCCeEEEEeCCCCeeeEEE
Confidence 5521 112233444 678999999988 4899999999999999999
Q ss_pred cc--ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc----CCCCEEEEEEcCCcEE
Q 001190 581 AG--FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS----KEGNLLAVTTADNGFK 654 (1128)
Q Consensus 581 ~~--~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----p~~~~l~~~~~dg~i~ 654 (1128)
.+ |.. .+.+++|+|++++|++|+.||.|++||+++++.+..+.... ...|.+++|+ |++.+|++++.||.|+
T Consensus 209 ~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 209 ENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp ECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred ccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 98 555 89999999999999999999999999999999988876322 3478999554 5788999999999999
Q ss_pred EEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCC
Q 001190 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (1128)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 734 (1128)
+||+.++. ....+.++. ..+..+.|+|+++.+
T Consensus 287 iwd~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~l------------------------------------------ 318 (437)
T 3gre_A 287 IWNFVKGH-CQYAFINSD-----EQPSMEHFLPIEKGL------------------------------------------ 318 (437)
T ss_dssp EEETTTTE-EEEEEESSS-----SCCCGGGGSCBCSSG------------------------------------------
T ss_pred EEEcCCCc-EEEEEEcCC-----CCCccceeccccccc------------------------------------------
Confidence 99998763 333332221 122222333322211
Q ss_pred CCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceec
Q 001190 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1128)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 814 (1128)
.+.
T Consensus 319 -------------------------------------------------~~~---------------------------- 321 (437)
T 3gre_A 319 -------------------------------------------------EEL---------------------------- 321 (437)
T ss_dssp -------------------------------------------------GGC----------------------------
T ss_pred -------------------------------------------------ccc----------------------------
Confidence 000
Q ss_pred cCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCC---CeeEEEEcCCCCCEEEE
Q 001190 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAI 890 (1128)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~d~~~las 890 (1128)
.+.+..|...|.+++|+ ++++|++++ |+.|++||+.+++....+.+|.. .+....+++ +..+++.
T Consensus 322 ---------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 390 (437)
T 3gre_A 322 ---------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLR 390 (437)
T ss_dssp ---------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEE
T ss_pred ---------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEE
Confidence 00011267789999999 888999998 99999999999999998887643 355666666 5444443
Q ss_pred EeCCCcEEEEecccceeeecccccccCeeEEEEcCC--CCEEEEEcCCCcEEEEE
Q 001190 891 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS--LNILVSSGADAQLCVWS 943 (1128)
Q Consensus 891 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~s~~~Dg~i~iwd 943 (1128)
. |+...+.....+..|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 391 ~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 391 K--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp E--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred e--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 3 333444555667789999999999998 77999999999999995
No 52
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-34 Score=318.08 Aligned_cols=307 Identities=15% Similarity=0.208 Sum_probs=227.5
Q ss_pred CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCC--eeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
+.+++..+.+|.. .|.+++|+++ +|++|+.|+.|++||+.++ .....+...+|...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4566788888887 8999999987 9999999999999999875 344444333366689999999999999999999
Q ss_pred CcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcc
Q 001190 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1128)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (1128)
++|++|++....... .
T Consensus 80 ~~v~iw~~~~~~~~~-------~--------------------------------------------------------- 95 (330)
T 2hes_X 80 STVSIWAKEESADRT-------F--------------------------------------------------------- 95 (330)
T ss_dssp SCEEEEEC--------------C---------------------------------------------------------
T ss_pred CcEEEEEcccCcCcc-------c---------------------------------------------------------
Confidence 999999975320000 0
Q ss_pred cCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeecc
Q 001190 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1128)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (1128)
. +. + +.
T Consensus 96 ------~---~~------------------------------------~--------~~--------------------- 101 (330)
T 2hes_X 96 ------E---MD------------------------------------L--------LA--------------------- 101 (330)
T ss_dssp ------C---CE------------------------------------E--------EE---------------------
T ss_pred ------c---ce------------------------------------e--------EE---------------------
Confidence 0 00 0 00
Q ss_pred ceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCC----ceEEEEeeCCCCCeeEEEEcCCCC
Q 001190 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT----FKVMTTFMSPPPASTFLAFHPQDN 885 (1128)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~----~~~~~~~~~~~~~v~~l~~s~~d~ 885 (1128)
.+. .|...|.+++|+|+|++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++
T Consensus 102 -------------~~~--~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~ 165 (330)
T 2hes_X 102 -------------IIE--GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SE 165 (330)
T ss_dssp -------------EEC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SS
T ss_pred -------------EEc--CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CC
Confidence 001 1666777777777777777777 77788887732 356778889999999999999 89
Q ss_pred CEEEEEeCCCcEEEEecccc--eeeecccccccCeeEEEEcCC--CCEEEEEcCCCcEEEEECCCCcccc---eeEEeec
Q 001190 886 NIIAIGTEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTS--LNILVSSGADAQLCVWSIDTWEKRK---SVTIHIP 958 (1128)
Q Consensus 886 ~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d--~~~l~s~~~Dg~i~iwd~~~~~~~~---~~~~~~~ 958 (1128)
.+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.... .......
T Consensus 166 ~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 245 (330)
T 2hes_X 166 ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL 245 (330)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC
T ss_pred CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeec
Confidence 99999999999999999866 678899999999999999999 6799999999999999997643211 1222233
Q ss_pred CCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCccc--ccccccCCCCCC-CeEEEEEee--CCCEEEEEecCCcEEE
Q 001190 959 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMER--IRQWTPQDALSA-PISCAVYSC--NSQLVFATFCDGNIGV 1033 (1128)
Q Consensus 959 ~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~--~~~~~~~~~h~~-~v~~l~~s~--dg~~l~t~~~dg~i~v 1033 (1128)
.......+.+++|++++.++..+.|+.|++|+..++.. +... ...|.. .|.+++|+| |+++|++|+.||.|+|
T Consensus 246 ~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~ 323 (330)
T 2hes_X 246 PDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR--ALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323 (330)
T ss_dssp CSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE--SCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred ccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc--ccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence 33233789999999877544445699999999987642 2222 123355 899999999 7999999999999999
Q ss_pred EecCC
Q 001190 1034 FDADT 1038 (1128)
Q Consensus 1034 wd~~~ 1038 (1128)
||+++
T Consensus 324 W~~~~ 328 (330)
T 2hes_X 324 WSLEK 328 (330)
T ss_dssp EEC--
T ss_pred EEecc
Confidence 99875
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-36 Score=348.64 Aligned_cols=285 Identities=10% Similarity=0.082 Sum_probs=216.5
Q ss_pred CcceEEeecCCCcEEEEEEeCCC---------CcEEEE-------------------eeccCeEEEEEccCCceeccccc
Q 001190 334 PRTVAVSLHQGSTVISMDFHPSH---------QTLLLV-------------------GSSNGEITLWELAMRDRLVSKPF 385 (1128)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fspdg---------~~lla~-------------------gs~d~~i~iwd~~~~~~~~~~~~ 385 (1128)
......++.+.+.|++|+|+|++ + +||+ |+.|++|+|||+.+++....
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~--- 198 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV--- 198 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEE---
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce---
Confidence 34455566677888888888876 3 5555 45788999999987764211
Q ss_pred ccccccccCccccceeccCCCcceEEEEEccC------CCEEEEEeCCCeEEEEEccCCCcc--------eeceeecccc
Q 001190 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPD------GNYVGVAFTKHLIQLYSYAGSNDL--------RQHSQIDAHV 451 (1128)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------g~~las~~~d~~i~vwd~~~~~~~--------~~~~~~~~h~ 451 (1128)
....+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++... ....++.+|.
T Consensus 199 ------------~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~ 266 (524)
T 2j04_B 199 ------------KVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD 266 (524)
T ss_dssp ------------EEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT
T ss_pred ------------EEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC
Confidence 01225678899999999997 579999999999999999877532 1123577999
Q ss_pred cceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-CeEEEecCCCCCeEEEeccCCCCc-cEEEEEeccCcEEEEecCCC
Q 001190 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYDTM 528 (1128)
Q Consensus 452 ~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g-~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~ 528 (1128)
..|++++|++++ .|++|+.||+|++|| .++ .+...+.+|...|.++++...+++ .+|++++.|++|++||+++.
T Consensus 267 ~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 267 SLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp TCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred CCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 999999999864 699999999999999 555 445678999999999943224465 79999999999999999887
Q ss_pred CceeeecCCC--CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC
Q 001190 529 GSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1128)
Q Consensus 529 ~~~~~~~~~~--~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d 606 (1128)
.....+..+. ..|.+++|+|+++.+++++ .++.|++||++++..+..+.+|.. .|.+++|+|+++.|++|+.|
T Consensus 344 ~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~----~d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 344 ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD----GASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp HHHCEEEEECSCCSCCCEEEETTTTEEEEEC----SSSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCBCEEEETT
T ss_pred CcccccccccccCcccceEeCCCcCeEEEeC----CCCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCeEEEEECC
Confidence 6665555443 2578999999999988887 488999999999999889999887 89999999999999999999
Q ss_pred CcEEEEECCCCeeeEEEecC---CCCCCcceEEEcCCCCE
Q 001190 607 SQIKFWDMDNVNILTSTDAE---GGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~sp~~~~ 643 (1128)
|+|++||...+ .+...... .....+..++|+|++..
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 457 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDK 457 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCE
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCe
Confidence 99999998654 22211100 01113567788888763
No 54
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.6e-33 Score=326.70 Aligned_cols=276 Identities=18% Similarity=0.278 Sum_probs=242.0
Q ss_pred eecCCCcE-EEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 340 SLHQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 340 ~~~h~~~V-~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
..+|.+.| +| ++++|+ ++++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+ +
T Consensus 114 l~~h~~~v~~~--~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~ 169 (445)
T 2ovr_B 114 LKGHDDHVITC--LQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--D 169 (445)
T ss_dssp EECSTTSCEEE--EEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--T
T ss_pred ecccCCCcEEE--EEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--C
Confidence 34588775 55 555677 789999999999999999887643 77899999999998 6
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCe
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v 497 (1128)
.+|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++|| .+++.+..+.+|...|
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v 242 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred CEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccE
Confidence 699999999999999999987665 577999999999996 45 799999999999999 8899999999999999
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
.++++ ++.++++++.||.|++||+++......+..|...|.++.| ++.++++++ .++.|++||+.+++.+
T Consensus 243 ~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~----~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 243 RCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS----LDTSIRVWDVETGNCI 312 (445)
T ss_dssp EEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE----TTSCEEEEETTTCCEE
T ss_pred EEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe----CCCeEEEEECCCCCEE
Confidence 99998 4578999999999999999998888889889999999999 888999988 4899999999999999
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCC-CCCCcceEEEcCCCCEEEEEEcCCcEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~~~~~dg~i~iw 656 (1128)
..+.+|.. .+.++.+ +++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||.|++|
T Consensus 313 ~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 313 HTLTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW 387 (445)
T ss_dssp EEECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred EEEcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEE
Confidence 99998876 6666665 56799999999999999999999988887532 45678999995 5799999999999999
Q ss_pred EcccC
Q 001190 657 ANAIG 661 (1128)
Q Consensus 657 ~~~~~ 661 (1128)
|+.++
T Consensus 388 d~~~~ 392 (445)
T 2ovr_B 388 DLKTG 392 (445)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 99876
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.3e-33 Score=328.23 Aligned_cols=292 Identities=16% Similarity=0.254 Sum_probs=249.2
Q ss_pred cccCCCCCcceEEeecCCCcE-EEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V-~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1128)
.|.............+|...| .|+.| +++ ++++|+.||+|+|||+.+++.+.. +.+|
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h 161 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGH 161 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCC
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCC
Confidence 344333333444445687774 66666 455 789999999999999999887653 7789
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec--CCCeEEEEEecCCCeEEEEe-c
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-L 482 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~--d~~~~~l~s~s~d~~i~vWd-~ 482 (1128)
.+.|.+++|+|++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++|| .
T Consensus 162 ~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 162 DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp SSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECC
T ss_pred CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCC
Confidence 9999999999998 99999999999999999987665 5789999999999995 566 899999999999999 5
Q ss_pred CCC-----------------------eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCC
Q 001190 483 SGR-----------------------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539 (1128)
Q Consensus 483 ~g~-----------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 539 (1128)
++. .+..+.+|...|.++.. ++.++++++.||.|++||+.+.+....+..|..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 311 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 311 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence 544 25577889999998853 567999999999999999999988889999999
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 619 (1128)
.|.+++|+|+++++++++. ++.|++||+.+++.+..+.+|.. .+.+++++ ++++++++.||.|++||+.++..
T Consensus 312 ~v~~~~~~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp CEEEEEEETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred CEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCce
Confidence 9999999999999999984 89999999999999999999887 88888887 58999999999999999999877
Q ss_pred eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
...... ...+..++|+++++++++++ ||.|++||+.++
T Consensus 385 ~~~~~~---~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 385 KFSYHH---TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEEC---TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred eeeecC---CCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 666542 23578889999999999998 899999999887
No 56
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-33 Score=322.74 Aligned_cols=242 Identities=19% Similarity=0.314 Sum_probs=206.4
Q ss_pred CCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccc------------------cceeEEEEecCCCe
Q 001190 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV------------------GAVNDLAFAYPNKL 465 (1128)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~------------------~~v~~l~fs~d~~~ 465 (1128)
+|.+.|.+++|||||++||+|+ ++.++||++.+++.+.. +.+|. ..|++++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR---LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE---ECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE---ecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 67899999999886653 33332 2499999999999
Q ss_pred EEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEE
Q 001190 466 LCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (1128)
Q Consensus 466 ~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 544 (1128)
+|++|+.|++|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++++.....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999 88888999999999999999977 66899999999999999999887766665 44579999
Q ss_pred EEcC-CCCeEEEeeeccCCCceEEEEeCCCCceeeEe-------ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC
Q 001190 545 LYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY-------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1128)
Q Consensus 545 ~~s~-~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 616 (1128)
+|+| +++++++++. ++.|++||+.+++.+..+ .+|.. .|.+++|+|++++|++++.||.|++||+.+
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999 8999999884 899999999999888776 45555 899999999999999999999999999976
Q ss_pred Ce------------eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 617 VN------------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 617 ~~------------~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.. ....+. ++...|.+++|+|++.+|++|+.|+.|++||..++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp -------------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred CCCcccccCCCCCcceEEEe--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 43 233344 44557999999999999999999999999998765
No 57
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=7.2e-33 Score=357.11 Aligned_cols=484 Identities=13% Similarity=0.053 Sum_probs=356.6
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEeecc------CeEEEEEccCCceecccccccccccccCccccceeccCCCcc
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (1128)
........|...|.+++|||||+ .||.++.+ ..|.+||+.+++.. .+.+|...
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~-~la~~s~~~~~~~~~~i~~~d~~~g~~~--------------------~lt~~~~~ 101 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGR-KIAIRVMRGSSLNTADLYFYNGENGEIK--------------------RITYFSGK 101 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSS-EEEEEEEESTTCCEEEEEEEETTTTEEE--------------------ECCCCCEE
T ss_pred CcEEEeeeCCCcccCeEECCCCC-EEEEEEeeccCCCCCeEEEEECCCCCeE--------------------EcccCCCc
Confidence 44555667999999999999999 45655433 48999999887642 26778888
Q ss_pred e-------EEEEEccCCCEEEEEeCC------CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC--
Q 001190 409 V-------SRVAWSPDGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-- 473 (1128)
Q Consensus 409 V-------~~l~~spdg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~-- 473 (1128)
+ .+++|||||+.+++++.+ ..|.+|++.+++... +..+ ....++|+| | ++++++.
T Consensus 102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~l~~~~~~~ 171 (1045)
T 1k32_A 102 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---RRVIGRNTF 171 (1045)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---EEEEEESCS
T ss_pred ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---EEEEeccCC
Confidence 8 999999999977777654 358888888876432 3233 245778999 6 4666542
Q ss_pred ----------CCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC-ceeeecCCCCeE
Q 001190 474 ----------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWC 541 (1128)
Q Consensus 474 ----------d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~i 541 (1128)
+...++|. ..+.....+.+|...+.++.|++ + .++++++.|+.+++|.++... ....+..+. .+
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~ 247 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DY 247 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SS
T ss_pred CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Cc
Confidence 34567776 44456667799999999999965 4 577788889999999876533 333444333 45
Q ss_pred EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecccc----------CCceeEEEEe-CCCCEEEEEECCCcEE
Q 001190 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR----------KKSNGVVQFD-TTQNHFLAVGEDSQIK 610 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~~-~~~~~l~~~s~dg~i~ 610 (1128)
...+|+|||+.++++. ++.|++||....+. ..+.++. ...+..++|+ |+|++|++++ ++.|+
T Consensus 248 ~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~ 320 (1045)
T 1k32_A 248 YPRHLNTDGRRILFSK-----GGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAF 320 (1045)
T ss_dssp CEEEEEESSSCEEEEE-----TTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEE
T ss_pred ceeeEcCCCCEEEEEe-----CCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEE
Confidence 6779999999999874 78899999954443 3555421 1257889999 9999999888 78999
Q ss_pred EEECCCCeeeEEEecCCCCC-CcceEEEcCCCCEEEEEEcCCcEE-EEEcccCccccccccCCccccccCcceeeeeecc
Q 001190 611 FWDMDNVNILTSTDAEGGLP-NLPRLRFSKEGNLLAVTTADNGFK-ILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1128)
Q Consensus 611 iwd~~~~~~~~~~~~~~~~~-~v~~v~~sp~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 688 (1128)
+|+..+++... +. .+.. .+..++|+ ||+.+++++.++.+. +|++.++.. ..
T Consensus 321 ~~~~~~~~~~~-~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~--~~--------------------- 373 (1045)
T 1k32_A 321 IQDVSGTYVLK-VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA--EK--------------------- 373 (1045)
T ss_dssp EECTTSSBEEE-CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE--EE---------------------
T ss_pred EEcCCCCceEE-cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc--eE---------------------
Confidence 99998887554 22 2333 67899999 999999999887787 888654310 00
Q ss_pred cccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEE
Q 001190 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1128)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1128)
+ .++...+.
T Consensus 374 --------------------------------------------------------------------l---~~~~~~~~ 382 (1045)
T 1k32_A 374 --------------------------------------------------------------------F---EENLGNVF 382 (1045)
T ss_dssp --------------------------------------------------------------------C---CCCCCSEE
T ss_pred --------------------------------------------------------------------e---cCCcccee
Confidence 0 01455678
Q ss_pred EEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEE
Q 001190 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (1128)
Q Consensus 769 ~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 848 (1128)
.++|+|||++|++++.++.+++||+.. +.... ...+ |...+.+++|||||++|++
T Consensus 383 ~~~~SpDG~~la~~~~~~~v~~~d~~t----------------------g~~~~-~~~~--~~~~v~~~~~SpDG~~la~ 437 (1045)
T 1k32_A 383 AMGVDRNGKFAVVANDRFEIMTVDLET----------------------GKPTV-IERS--REAMITDFTISDNSRFIAY 437 (1045)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTT----------------------CCEEE-EEEC--SSSCCCCEEECTTSCEEEE
T ss_pred eeEECCCCCEEEEECCCCeEEEEECCC----------------------CceEE-eccC--CCCCccceEECCCCCeEEE
Confidence 899999999999999999999997643 22111 1112 6777899999999999988
Q ss_pred Ee-CC----------eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce-----------
Q 001190 849 AT-GG----------KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE----------- 906 (1128)
Q Consensus 849 ~~-dg----------~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----------- 906 (1128)
++ ++ .|++||+.+++ ...+..|...+..++|+| ||+.|++++.++...+|+.....
T Consensus 438 ~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1045)
T 1k32_A 438 GFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 515 (1045)
T ss_dssp EEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEE
T ss_pred EecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCCcCcchhccccccccCceeEE
Confidence 76 33 79999999987 667777888899999999 99999999987776666543211
Q ss_pred --------------------------------eeecccccccCeeEEEEcCCCCEEEE-------------EcCCCcEEE
Q 001190 907 --------------------------------VKSKLKGHQKRITGLAFSTSLNILVS-------------SGADAQLCV 941 (1128)
Q Consensus 907 --------------------------------~~~~l~~h~~~V~~l~~s~d~~~l~s-------------~~~Dg~i~i 941 (1128)
.+..+..|.+.+..++++|||+++++ .+.+..|.+
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~ 595 (1045)
T 1k32_A 516 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 595 (1045)
T ss_dssp EESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEE
T ss_pred EEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEE
Confidence 11233456778899999999987875 123457888
Q ss_pred EECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcc
Q 001190 942 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKME 995 (1128)
Q Consensus 942 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~ 995 (1128)
||+.+++..... ..+..++|||||++|+++.++.+++||+.+++
T Consensus 596 ~d~~~~~~~~l~----------~~v~~~~~S~DG~~l~~~~~~~i~~~d~~~~~ 639 (1045)
T 1k32_A 596 YDVKTRKVTEVK----------NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 639 (1045)
T ss_dssp EETTTCCEEEEE----------EEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred EECCCCcEEEee----------cCcceEEECCCCCEEEEEcCCcEEEEeCccCc
Confidence 899887642221 34678899999999999988899999998876
No 58
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7e-34 Score=326.60 Aligned_cols=291 Identities=13% Similarity=0.162 Sum_probs=250.5
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC----
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---- 417 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---- 417 (1128)
+|.+.|++++|+| + +|++|+.||.|+|||+.+++.... + .....+.+|...|.+++|+|+
T Consensus 14 ~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~--~-----------~~~~~~~~h~~~v~~~~~~~~~~~~ 77 (397)
T 1sq9_A 14 AHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENP--K-----------DKSYSHFVHKSGLHHVDVLQAIERD 77 (397)
T ss_dssp CSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCG--G-----------GGEEEEECCTTCEEEEEEEEEEETT
T ss_pred hhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccC--C-----------CcceEEecCCCcEEEEEEecccccC
Confidence 5999999999999 4 789999999999999998772110 0 011236789999999999999
Q ss_pred C---CEEEEEeCCCeEEEEEccCCCc-----ceeceeeccc-----ccceeEEEEe----cCCCeEE-EEEecCCCeEEE
Q 001190 418 G---NYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAH-----VGAVNDLAFA----YPNKLLC-VVTCGDDKLIKV 479 (1128)
Q Consensus 418 g---~~las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h-----~~~v~~l~fs----~d~~~~~-l~s~s~d~~i~v 479 (1128)
| ++|++++.||.|++||+.+++. +. .+.+| ...|.+++|+ |+++ + |++++.|+.|++
T Consensus 78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 78 AFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTYI 152 (397)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEEE
T ss_pred CccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEEE
Confidence 9 9999999999999999999875 44 46677 5999999999 9999 7 999999999999
Q ss_pred Ee-cC------CCeEE-----Ee-------cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC---C
Q 001190 480 WE-LS------GRKLF-----NF-------EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA---P 537 (1128)
Q Consensus 480 Wd-~~------g~~~~-----~~-------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~---~ 537 (1128)
|| .+ ++.+. .+ ..|...|.+++|++ ++ ++++++.||.|++||++.......+.. |
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h 229 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 229 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccc
Confidence 99 66 66665 66 44889999999977 66 999999999999999999888888888 7
Q ss_pred ---CCeEEEEEEcCCCCeEEEeeeccCCC---ceEEEEeCCCCceeeEecc-------------ccCCceeEEEEeCCCC
Q 001190 538 ---GHWCTTMLYSADGSRLFSCGTSKDGD---SFLVEWNESEGTIKRTYAG-------------FRKKSNGVVQFDTTQN 598 (1128)
Q Consensus 538 ---~~~i~~~~~s~~g~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~ 598 (1128)
...|.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |.. .+.+++|+|+++
T Consensus 230 ~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 304 (397)
T 1sq9_A 230 INNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGE 304 (397)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSSS
T ss_pred cccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECCCCC
Confidence 889999999999999999885 6 8999999999999999988 665 899999999999
Q ss_pred EEEEEECCCcEEEEECCCCeeeEEEe------cC-------------CCCCCcceEEEcCCC----------CEEEEEEc
Q 001190 599 HFLAVGEDSQIKFWDMDNVNILTSTD------AE-------------GGLPNLPRLRFSKEG----------NLLAVTTA 649 (1128)
Q Consensus 599 ~l~~~s~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~sp~~----------~~l~~~~~ 649 (1128)
+|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|++++.
T Consensus 305 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~ 384 (397)
T 1sq9_A 305 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL 384 (397)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET
T ss_pred EEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC
Confidence 99999999999999999999999887 43 014589999999998 79999999
Q ss_pred CCcEEEEEcccC
Q 001190 650 DNGFKILANAIG 661 (1128)
Q Consensus 650 dg~i~iw~~~~~ 661 (1128)
||.|++|++.++
T Consensus 385 dg~i~iw~~~~g 396 (397)
T 1sq9_A 385 DRSIRWFREAGG 396 (397)
T ss_dssp TTEEEEEEEEC-
T ss_pred CCcEEEEEcCCC
Confidence 999999999875
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=319.24 Aligned_cols=289 Identities=12% Similarity=0.110 Sum_probs=255.2
Q ss_pred eEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
.....+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+|
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~ 84 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDC 84 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECT
T ss_pred cEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcC
Confidence 334456999999999999999 789999999999999999887643 778999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC-----CeEEEEe-cCCC-----
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGR----- 485 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d-----~~i~vWd-~~g~----- 485 (1128)
++++|++++.||.|++||+.+++.+.. +. |...|.+++|+|+++ ++++++.+ +.|++|| ..+.
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVAT---WK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEE---EE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEE---ee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceee
Confidence 999999999999999999999887663 33 888999999999999 78899888 9999999 4442
Q ss_pred ------eEEEecCCCC--CeEEEeccCCCCccEEEEEeccCcEEEEecCC-CCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 486 ------KLFNFEGHEA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 486 ------~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
.+..+..|.+ .+.+++|++ ++.+|++++.||.|++||++. ......+..+...|.+++|+|++++|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 159 TKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS 236 (369)
T ss_dssp EEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe
Confidence 4455666766 899999977 668999999999999999998 56667788889999999999999999998
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC--------------cEEEEECCCCeeeEE
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--------------QIKFWDMDNVNILTS 622 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------------~i~iwd~~~~~~~~~ 622 (1128)
+ .++.|++||+.+++.+..+.. . ..+..++|+|+++++++++.++ .+++||..+++.+..
T Consensus 237 ~----~d~~i~v~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 310 (369)
T 3zwl_B 237 S----RDTNSFLVDVSTLQVLKKYET-D-CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR 310 (369)
T ss_dssp E----TTSEEEEEETTTCCEEEEEEC-S-SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE
T ss_pred c----CCceEEEEECCCCceeeeecC-C-CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence 7 489999999999999988883 3 3789999999999999999888 899999999999988
Q ss_pred EecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+..+. ..|.+++|+|++++|++++.||.|++|++..+
T Consensus 311 ~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 311 VQGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred eeccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 87554 48999999999999999999999999999875
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-35 Score=340.52 Aligned_cols=349 Identities=9% Similarity=0.031 Sum_probs=245.5
Q ss_pred CCcceEEEEEccCC---------CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC
Q 001190 405 VPISVSRVAWSPDG---------NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 405 h~~~V~~l~~spdg---------~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
+.+.|.+++|+|++ ++||+|+.++.. -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 67899999999987 799999866420 01368888 799999999
Q ss_pred eEEEEe-cCCCeE----EEecCCCCCeEEEeccCC----CCccEEEEEeccCcEEEEecCCCCc-----------eeeec
Q 001190 476 LIKVWE-LSGRKL----FNFEGHEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGS-----------RVDYD 535 (1128)
Q Consensus 476 ~i~vWd-~~g~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~~wd~~~~~~-----------~~~~~ 535 (1128)
+|+||| .+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 999999 556542 456778899999999986 3467999999999999999976542 23566
Q ss_pred CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc-eeeEeccccCCceeEE--EEeCCC-CEEEEEECCCcEEE
Q 001190 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVV--QFDTTQ-NHFLAVGEDSQIKF 611 (1128)
Q Consensus 536 ~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~s~dg~i~i 611 (1128)
.|...|.+++|++++ .|++++ .|+.|++||++++. +...+.+|.. .|.++ +|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs----~DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGF----KNGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEE----TTSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEe----CCCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788899999999865 788887 49999999999874 4556888877 78888 578887 89999999999999
Q ss_pred EECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeeccccc
Q 001190 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1128)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 691 (1128)
||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++.. ...
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~-~~~------------------------ 392 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA-VHP------------------------ 392 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC-CEE------------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc-cee------------------------
Confidence 9999887766665443323578999999999999999999999999866411 000
Q ss_pred ccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEE
Q 001190 692 AVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLL 771 (1128)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 771 (1128)
+ .+|.+.|.+++
T Consensus 393 -----------------------------------------------------------------l---~gH~~~V~sva 404 (524)
T 2j04_B 393 -----------------------------------------------------------------L---VSRETTITAIG 404 (524)
T ss_dssp -----------------------------------------------------------------E---EECSSCEEEEE
T ss_pred -----------------------------------------------------------------e---ecCCCceEEEE
Confidence 0 12888999999
Q ss_pred EecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeC
Q 001190 772 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG 851 (1128)
Q Consensus 772 ~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d 851 (1128)
|+|+|+.|++++.||+|++|++..... ....+ .....+...+.+++|+|+|+.+.. .
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~---------------~~~~~------~~~~~~~~~v~~v~~sp~g~~~~~--~ 461 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRLL---------------HGIKN------SSATQKSLRLWKWDYSIKDDKYRI--D 461 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSSTT---------------TCC------------CCCCEEEECBCCSSSCEEEE--C
T ss_pred eCCCCCeEEEEECCCEEEEEechHhhc---------------ccccc------CccceeeeEEEEeccCCCCCeEEc--c
Confidence 999999999999999999998643110 00000 000002234678999999996533 2
Q ss_pred CeEEEEECC-CceEEEEeeCCCCCeeEEEEcCCC---CCEEEEEeCCCcEEEEeccc
Q 001190 852 GKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQD---NNIIAIGTEDSTIHIYNVRV 904 (1128)
Q Consensus 852 g~i~vwd~~-~~~~~~~~~~~~~~v~~l~~s~~d---~~~lasg~~dg~v~iwd~~~ 904 (1128)
+.+.+|+.. ++.++..+.+|...|.+++|+| + +..+|+|+.||.|+||++.-
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 233344332 5677888999999999999999 6 45999999999999999763
No 61
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.5e-34 Score=335.49 Aligned_cols=294 Identities=17% Similarity=0.236 Sum_probs=238.7
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCC
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 419 (1128)
.+|...|+|++|||++..+||+|+.||.|+|||+.+++.... ..+.+|.+.|++|+|+| ++.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCC
Confidence 358889999999996555899999999999999987764321 12678999999999998 789
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEE
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~ 499 (1128)
+|++|+.||+|++||++++. +........+...+.+++|+|+++ +|++|+.||.|++||.+++.+..+.+|...|.+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTH 255 (435)
T ss_dssp EEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEE
T ss_pred EEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccCcceeEEEecccceEEe
Confidence 99999999999999998754 332222334556789999999999 899999999999999888889999999999999
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceee---ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1128)
++|++.. ..++++++.|+.|++||++....... ...|...|.+++|+|+|++|++++. |+.|++||+.++..
T Consensus 256 v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 256 VALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDC 330 (435)
T ss_dssp EEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSS
T ss_pred eeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCcc
Confidence 9998753 35889999999999999987665433 3467789999999999999999984 89999999999988
Q ss_pred eeEeccccCC-----ceeEEEEeCCCCEEEEEE------------CCCcEEEEECCCCeeeEEEecCCCCCCcceE-EEc
Q 001190 577 KRTYAGFRKK-----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRL-RFS 638 (1128)
Q Consensus 577 ~~~~~~~~~~-----~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s 638 (1128)
...+..|... ......|++++..+++++ .++.|++||..+++.+..+.. .+...|.++ +|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~fs 409 (435)
T 4e54_B 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEFN 409 (435)
T ss_dssp EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEEC
T ss_pred ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEEC
Confidence 8877766431 123356777777777664 245799999999998887753 334467777 699
Q ss_pred CCCCEEEEEEcCCcEEEEEcccC
Q 001190 639 KEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
|+|++|++|+ |+.|+||++.++
T Consensus 410 pdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 410 PMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TTSSCEEEEC-SSEEEECCCC--
T ss_pred CCCCEEEEEc-CCcEEEEECCcC
Confidence 9999999876 789999999876
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.6e-34 Score=323.11 Aligned_cols=293 Identities=15% Similarity=0.099 Sum_probs=247.6
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCc--eecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
|.++|++++|+|+|+ +|++|+.|+.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 889999999999998 78999999999999998876 332 37789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCe----EEEecCCCC
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK----LFNFEGHEA 495 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~----~~~~~~h~~ 495 (1128)
|++++.||.|++||+.+++..... .+.+|...|.+++|+|+++ +|++++.|+.|++|| ..+.. .....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPTL-VILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEE-ECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeeeeE-EeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 999999999999999987644322 3568999999999999999 899999999999999 55552 233467899
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecC------------------CCCceeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYD------------------TMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~------------------~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
.|.+++|++ ++.+|++++.||.|++||+. .......+..+...|.+++|+|+++++++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999977 66899999999999999954 4566667778888999999999999999988
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC--CeeeE--E-----------
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILT--S----------- 622 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~~--~----------- 622 (1128)
.++.|++||+.+++.+..+..|.. .+.+++|+|++.+++++ .|+.|++|++.+ +.... .
T Consensus 222 ----~d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 ----HDSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp ----TTTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred ----CCCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 489999999999999999998876 89999999999877776 999999999987 53110 0
Q ss_pred -----------------------Eec-CCCCCCcceEEEc-CCC---CEEEEEEcCCcEEEEEcccCccccc
Q 001190 623 -----------------------TDA-EGGLPNLPRLRFS-KEG---NLLAVTTADNGFKILANAIGLRSLR 666 (1128)
Q Consensus 623 -----------------------~~~-~~~~~~v~~v~~s-p~~---~~l~~~~~dg~i~iw~~~~~~~~~~ 666 (1128)
... .+|...|.+++|+ ++| .+|++++.||.|++|++.++.+.++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 111 2566689999966 676 9999999999999999988755443
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-33 Score=309.54 Aligned_cols=287 Identities=17% Similarity=0.265 Sum_probs=249.9
Q ss_pred ceEEee-cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
.....+ +|.+.|++++| |+++ +|++|+.||.|+|||+.+++... .+..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEE
Confidence 444555 49999999999 9988 68999999999999998876553 26679999999999
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCC
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~ 494 (1128)
+|++++|++|+.||.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|.
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d-~~~~~~~~~~~~ 142 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK-EGSLVYNLQAHN 142 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE-TTEEEEEEECCS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc-CCcEEEecccCC
Confidence 999999999999999999999876544445568899999999999 466 799999999999999 788889999999
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC-CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~ 573 (1128)
..+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++ .++.|++||+.+
T Consensus 143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~----~dg~i~i~d~~~ 214 (313)
T 3odt_A 143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS----NDGLIKLVDMHT 214 (313)
T ss_dssp SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE----TTSEEEEEETTT
T ss_pred CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc----CCCeEEEEECCc
Confidence 99999998763 457999999999999998 3445555665 788999999999998 77766 489999999999
Q ss_pred CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE
Q 001190 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1128)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 653 (1128)
++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..|.+++|+|+++ +++++.||.|
T Consensus 215 ~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 215 GDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp CCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEETTSCE
T ss_pred hhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeCCCcE
Confidence 999999998887 89999999998 69999999999999999999998887654 4799999999998 6679999999
Q ss_pred EEEEcccC
Q 001190 654 KILANAIG 661 (1128)
Q Consensus 654 ~iw~~~~~ 661 (1128)
++|++.++
T Consensus 290 ~iw~~~~~ 297 (313)
T 3odt_A 290 RIFSQEKS 297 (313)
T ss_dssp EEEESCGG
T ss_pred EEEeCCCC
Confidence 99999876
No 64
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.6e-33 Score=321.92 Aligned_cols=319 Identities=19% Similarity=0.308 Sum_probs=270.3
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
.+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+ +. ++++|+.|++|++|
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence 47889887643 356679999999999999999999998766 577999999999998 45 79999999999999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
| .+++.+..+.+|...|.+++++ +..+++++.||.|++||+.+++....+..+...|.++.+ +++++++++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-- 256 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA-- 256 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEE--
T ss_pred ECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEc--
Confidence 9 8899999999999999999984 358999999999999999999988899999999999998 788899887
Q ss_pred cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (1128)
.++.|++||+.+++.+..+.+|.. .+.++.| ++.++++++.||.|++||+.+++.+..+..+. ..+.++.+
T Consensus 257 --~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~-- 327 (445)
T 2ovr_B 257 --YDFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ--SLTSGMEL-- 327 (445)
T ss_dssp --TTSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCC--SCEEEEEE--
T ss_pred --CCCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc--ccEEEEEE--
Confidence 489999999999999999998876 7888888 78999999999999999999999988887543 35666665
Q ss_pred CCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCC
Q 001190 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719 (1128)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1128)
+++++++++.||.|++||+.++.. ...+..
T Consensus 328 ~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~------------------------------------------------- 357 (445)
T 2ovr_B 328 KDNILVSGNADSTVKIWDIKTGQC-LQTLQG------------------------------------------------- 357 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCE-EEEECS-------------------------------------------------
T ss_pred eCCEEEEEeCCCeEEEEECCCCcE-EEEEcc-------------------------------------------------
Confidence 567999999999999999865411 100000
Q ss_pred CCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCC
Q 001190 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN 799 (1128)
Q Consensus 720 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~ 799 (1128)
T Consensus 358 -------------------------------------------------------------------------------- 357 (445)
T 2ovr_B 358 -------------------------------------------------------------------------------- 357 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEe-----eCCCC
Q 001190 800 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF-----MSPPP 873 (1128)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~-----~~~~~ 873 (1128)
. ..|...|.+++|+ ++++++++ ||.|++||+.+++.+..+ ..|.+
T Consensus 358 -------------------------~--~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 408 (445)
T 2ovr_B 358 -------------------------P--NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 408 (445)
T ss_dssp -------------------------T--TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred -------------------------C--CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc
Confidence 0 0155667778874 57888887 888999999999888887 46788
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCc----EEEEeccc
Q 001190 874 ASTFLAFHPQDNNIIAIGTEDST----IHIYNVRV 904 (1128)
Q Consensus 874 ~v~~l~~s~~d~~~lasg~~dg~----v~iwd~~~ 904 (1128)
.|.+++|+| ++.++|+|+.||+ |.+||+..
T Consensus 409 ~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 409 VVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 899999999 9999999999998 99999874
No 65
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.4e-33 Score=311.04 Aligned_cols=298 Identities=17% Similarity=0.273 Sum_probs=246.3
Q ss_pred eccCCCcceEEEEEccC-CCEEEEEeCCCeEEEEEccCCCcc--eeceeecccccceeEEEEecCCCeEEEEEecCCCeE
Q 001190 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i 477 (1128)
.|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+++.. .....+.+|...|.+++|+|+|+ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 48999999999999997 689999999999999999876542 22346789999999999999999 89999999999
Q ss_pred EEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee-eecCCCCeEEEEEEcCCCC--eE
Q 001190 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGS--RL 553 (1128)
Q Consensus 478 ~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~~g~--~l 553 (1128)
++|+ ..+........+...+..+.+.+ ++.+|++++.|+.+++||+....... ....+...+..++|++++. .+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 9999 77878888888888898888866 56789999999999999987654433 3456777899999998764 45
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcc
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1128)
++++ .++.|++||+.+++.+..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+.+.+..+..+. .|.
T Consensus 189 ~s~~----~d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~ 260 (340)
T 4aow_A 189 VSCG----WDKLVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---IIN 260 (340)
T ss_dssp EEEE----TTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEc----CCCEEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eEE
Confidence 5665 488999999999999999999887 89999999999999999999999999999999988887543 689
Q ss_pred eEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcc
Q 001190 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1128)
Q Consensus 634 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~ 713 (1128)
++.|+|++.++ +++.|+.|++||+.++. ....+.....
T Consensus 261 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~-~~~~~~~~~~---------------------------------------- 298 (340)
T 4aow_A 261 ALCFSPNRYWL-CAATGPSIKIWDLEGKI-IVDELKQEVI---------------------------------------- 298 (340)
T ss_dssp EEEECSSSSEE-EEEETTEEEEEETTTTE-EEEEECCC------------------------------------------
T ss_pred eeecCCCCcee-eccCCCEEEEEECCCCe-EEEeccccce----------------------------------------
Confidence 99999987655 55569999999987652 2221111000
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeec
Q 001190 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1128)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 793 (1128)
.... .+|...|.+++|+|+|++|++++.||.|++|++
T Consensus 299 ----------------------------------------~~~~---~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 299 ----------------------------------------STSS---KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ------------------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ----------------------------------------eeec---cCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 0000 238889999999999999999999999999987
Q ss_pred cc
Q 001190 794 HR 795 (1128)
Q Consensus 794 ~~ 795 (1128)
..
T Consensus 336 ~t 337 (340)
T 4aow_A 336 TI 337 (340)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 66
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-32 Score=323.45 Aligned_cols=345 Identities=16% Similarity=0.208 Sum_probs=268.7
Q ss_pred eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEE
Q 001190 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1128)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 655 (1128)
....+.+|....+.++.+ +++++++|+.||.|++||+.+++.+..+..| ...|.+++|+|++ ++++|+.||+|++
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC--CcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 456788888755666666 5679999999999999999999999888754 4589999999988 9999999999999
Q ss_pred EEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCC
Q 001190 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVT 735 (1128)
Q Consensus 656 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 735 (1128)
||+.++. ....
T Consensus 188 wd~~~~~-~~~~-------------------------------------------------------------------- 198 (464)
T 3v7d_B 188 WDIKKGC-CTHV-------------------------------------------------------------------- 198 (464)
T ss_dssp EETTTTE-EEEE--------------------------------------------------------------------
T ss_pred EECCCCc-EEEE--------------------------------------------------------------------
Confidence 9987652 1111
Q ss_pred CCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEe--cCcceEEEeeccceeEeeeccccCCCCCCceeeeecccee
Q 001190 736 DKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT--NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 813 (1128)
Q Consensus 736 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~ 813 (1128)
+ .+|...|.+++|+ +++.++++++.||.+++|++....................
T Consensus 199 ---------------------~---~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 199 ---------------------F---EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp ---------------------E---CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred ---------------------E---CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 1 1277888999888 5788999999999999999876543211111000000011
Q ss_pred ccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEe
Q 001190 814 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 892 (1128)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~ 892 (1128)
...........+.+ |...+.++ +++++++++++ ||.|++||+.+++.+..+.+|...|.+++|+| +++++++|+
T Consensus 255 ~~~~~~~~~~~~~~--~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~ 329 (464)
T 3v7d_B 255 TPEENPYFVGVLRG--HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISAS 329 (464)
T ss_dssp CGGGCTTEEEEECC--CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEE
T ss_pred ccCCCeEEEEEccC--ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEe
Confidence 11111111222333 67777766 68899999998 89999999999999999999999999999999 999999999
Q ss_pred CCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEc
Q 001190 893 EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 972 (1128)
Q Consensus 893 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 972 (1128)
.||.|++||+.+++++..+.+|...|.+++|+ +.+|++++.||.|++||+.+++...... ....+..++|+
T Consensus 330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-------~~~~~~~~~~~ 400 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-------HTNLSAITTFY 400 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-------CTTCCCEEEEE
T ss_pred CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-------CCCCccEEEEE
Confidence 99999999999999999999999999999997 5799999999999999999876433221 12567888999
Q ss_pred CCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEe
Q 001190 973 ADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 973 ~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd 1035 (1128)
+++.++++++|+.|++||+.+++.+...... |...|.+++|+ ++.++++++.||.+.+|-
T Consensus 401 ~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~--~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 401 VSDNILVSGSENQFNIYNLRSGKLVHANILK--DADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp ECSSEEEEEETTEEEEEETTTCCEEESCTTT--TCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred eCCCEEEEecCCeEEEEECCCCcEEehhhcc--CCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 9999999999999999999999988764333 38899999997 444555566777666554
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.1e-34 Score=323.71 Aligned_cols=290 Identities=15% Similarity=0.235 Sum_probs=244.5
Q ss_pred cCCCcEEEEEEeCC---CCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-
Q 001190 342 HQGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1128)
Q Consensus 342 ~h~~~V~~v~fspd---g~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 417 (1128)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCC
Confidence 59999999999995 444666667788999999998776532 1 11123347889999999999
Q ss_pred ---CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec-CCCeEEEEEecCCCeEEEEe-cCCCeEEEe--
Q 001190 418 ---GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (1128)
Q Consensus 418 ---g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~-d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~-- 490 (1128)
|++|++|+.||.|++||+.+++.+. .+.+|...|++++|+| ++. +|++|+.|+.|++|| .+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999988765 5778999999999999 888 899999999999999 888888888
Q ss_pred -cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec----------------------------CCCCeE
Q 001190 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----------------------------APGHWC 541 (1128)
Q Consensus 491 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~----------------------------~~~~~i 541 (1128)
.+|...|.+++|++ ++.+|++++.||.|++||++.......+. .+...|
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 78999999999977 66899999999999999998765443322 277889
Q ss_pred EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce--------------eeEeccccCCceeEEEEeCC--CCEEEEEEC
Q 001190 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--------------KRTYAGFRKKSNGVVQFDTT--QNHFLAVGE 605 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~ 605 (1128)
.+++|+ ++++++++. ++.|++||+.+++. +..+.+|.. .+.+++|+|+ +++|++++.
T Consensus 235 ~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999998 778888874 89999999988754 677777776 7899999999 999999999
Q ss_pred CCcEEEEECCCCee----eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 606 DSQIKFWDMDNVNI----LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 606 dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
||.|++||+.+++. ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999998764 3356655446789999999999999999999999999975
No 68
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=318.49 Aligned_cols=289 Identities=13% Similarity=0.198 Sum_probs=241.2
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeec---cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC-
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 417 (1128)
+|.+.|++++|+|+|++++++|+. |+.|+|||+.+++.... ...+|...|.+++|+|+
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCGTFGATS 77 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEEECTTCC
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEEEEcCCC
Confidence 499999999999999878888887 99999999998876431 13368999999999999
Q ss_pred --CCEEEEEeCCCeEEEEEccCCC-cceeceeecccccceeEEEE------ecCCCeEEEEEecCCCeEEEEe-cCCC-e
Q 001190 418 --GNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLIKVWE-LSGR-K 486 (1128)
Q Consensus 418 --g~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~f------s~d~~~~~l~s~s~d~~i~vWd-~~g~-~ 486 (1128)
|.+|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++|| .+++ .
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSC
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCc
Confidence 7999999999999999999987 444 57799999999955 67898 899999999999999 6665 6
Q ss_pred EEEecCCCC----CeEEEecc--CCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcC---CCCeEEEee
Q 001190 487 LFNFEGHEA----PVYSICPH--HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA---DGSRLFSCG 557 (1128)
Q Consensus 487 ~~~~~~h~~----~v~~~~~~--~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~~~ 557 (1128)
+..+..|.+ .+.+++|. ..+++.++++++.||.|++||++..... ....+...|.+++|+| ++.++++++
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 231 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATS 231 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEEC
Confidence 777766655 78888832 1347789999999999999999887664 3455677899999999 999999987
Q ss_pred eccCCCceEEEEeCCCCceeeEec-----cccCCceeEEEEeCCCC-EEEEEECCCcEEEEECCCC--------------
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYA-----GFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV-------------- 617 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~-------------- 617 (1128)
. ++.|++||+++++....+. +|.. .+.+++|+|++. ++++++.||.|++||+.++
T Consensus 232 ~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 232 L----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp S----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred C----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence 4 8999999999887766665 7765 899999999998 8999999999999999754
Q ss_pred -----eeeEEEecCCCCCCcceEEEcCCCCEEE-EEEcCCcEEEEEcccC
Q 001190 618 -----NILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIG 661 (1128)
Q Consensus 618 -----~~~~~~~~~~~~~~v~~v~~sp~~~~l~-~~~~dg~i~iw~~~~~ 661 (1128)
+.+..+.. +...|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus 307 ~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 307 VAGSVSLLQNVTL--STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCEEEEEEEEEC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccccceeecccc--CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 34445554 455899999999999998 7999999999998764
No 69
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.9e-33 Score=318.39 Aligned_cols=316 Identities=15% Similarity=0.205 Sum_probs=252.8
Q ss_pred EEeCCCCceeeEeccccCCceeEEEEeCCC-CEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCCEEE
Q 001190 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLA 645 (1128)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~ 645 (1128)
+|+....+....+.+|.. .|.+++|+|++ ++|++|+.||.|++||+.+++....+...++...|.+++|+| ++++|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 345556677778888886 89999999999 999999999999999999998888877656777999999999 789999
Q ss_pred EEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCC
Q 001190 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1128)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1128)
+++.|+.|++||+.+. ....+..
T Consensus 136 s~~~d~~i~iwd~~~~--~~~~~~~------------------------------------------------------- 158 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS--VIQVFAK------------------------------------------------------- 158 (383)
T ss_dssp EEETTTEEEEEETTSC--EEEEEEC-------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC--ceEEEec-------------------------------------------------------
Confidence 9999999999997532 0000000
Q ss_pred CCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCcee
Q 001190 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (1128)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (1128)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCC
Q 001190 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 884 (1128)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d 884 (1128)
.. .+...|.+++|+|++++|++++ |+.|++||+ +++.+..+.+|...|.+++|+| +
T Consensus 159 -------------------~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~ 215 (383)
T 3ei3_B 159 -------------------TD--SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-R 215 (383)
T ss_dssp -------------------CC--CSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-S
T ss_pred -------------------cC--CCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-C
Confidence 00 1456688888889888888888 788999998 5778888899999999999999 7
Q ss_pred CC-EEEEEeCCCcEEEEeccc----ceeeecccccccCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCCcccceeEEeec
Q 001190 885 NN-IIAIGTEDSTIHIYNVRV----DEVKSKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 958 (1128)
Q Consensus 885 ~~-~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~l~~s~-d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~ 958 (1128)
++ +|++|+.|+.|++||+.+ +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+.+++....+..+..
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence 77 999999999999999998 5666666 6999999999999 999999999999999999999877655543321
Q ss_pred CCCC-CCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 959 AGKT-PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 959 ~~~~-~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
.... ...+. +.|+| ...+..++|+|||++ +++.||.|+|||+.
T Consensus 295 ~~~~~~~~~~-~~~~p---------------------------------~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 295 RQFQHLTPIK-ATWHP---------------------------------MYDLIVAGRYPDDQL--LLNDKRTIDIYDAN 338 (383)
T ss_dssp CCCTTSCCCC-CEECS---------------------------------SSSEEEEECBCCTTT--CTTCCCCEEEEETT
T ss_pred cccccccceE-EeccC---------------------------------CCCceEEEecCCccc--ccCCCCeEEEEecC
Confidence 1110 01111 23333 345667889999998 88999999999999
Q ss_pred CCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1038 TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
+++.+..+.. +.+...+..++|+| ++.+|++|+ ||.|++||+.+
T Consensus 339 ~~~~~~~l~~----------~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 SGGLVHQLRD----------PNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCEEEEECB----------TTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred CCceeeeecC----------CCCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 9999888872 23455566779999 689999997 99999999875
No 70
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.7e-33 Score=314.37 Aligned_cols=301 Identities=11% Similarity=0.113 Sum_probs=231.2
Q ss_pred CCCcEEEEEEeCCCCcEEEEeecc-------CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSN-------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
...+|+|++|+|||+ +|++|+.| +.|+||++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 345899999999998 78888653 36999999876543211110 01122477899999988765
Q ss_pred cCCCEEEEEe-----------CCCeEEEEEccCCCcceec------eeecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 416 PDGNYVGVAF-----------TKHLIQLYSYAGSNDLRQH------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 416 pdg~~las~~-----------~d~~i~vwd~~~~~~~~~~------~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
+..+++|. .|+.+++|++..+...... .....+...+.+++|+|||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 55666653 5778999999876432111 1122455678999999999965566778899999
Q ss_pred EEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee--ecCCCCeEEEEEEcCCCCeEEE
Q 001190 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 479 vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
||| .+++++..+. |.+.|.+++|+| +|+++++++.+ .+++|+..++..... ...+...|.+++|+|+|+++++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 999 8888888876 778899999977 77899998855 566666666665543 3456678999999999999999
Q ss_pred eeeccCCCceEEEEeCCCCce----eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCC
Q 001190 556 CGTSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
++.++.....+++|++..... ...+.+|.. .|.+++|+|+|++|++|+.|+.|+|||+.+++++..+. .+|...
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~-~gH~~~ 314 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK-QAHSFA 314 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET-TSSSSC
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec-CcccCC
Confidence 987544445788999877653 345667766 79999999999999999999999999999999888752 244568
Q ss_pred cceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 632 LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
|++++|+|||++|++++.|++|+||++..+
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999765
No 71
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-34 Score=321.14 Aligned_cols=315 Identities=11% Similarity=0.083 Sum_probs=245.4
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-..+|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 457899999999999 889999999999 6444332 46899999999999999
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCC-----Ce
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA-----PV 497 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~-----~v 497 (1128)
.++.+.+|+.+....+ .+ +|...|++++|||||+ .|++++.||+|++||..+ ++..+. |.. .|
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCE
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccE
Confidence 4555555554332211 12 5688999999999999 799999999999999444 666677 766 49
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCc-------eeee----cCCCCeEEEEEEcCCCCeEEEeeeccCCCceE
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-------RVDY----DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-------~~~~----~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i 566 (1128)
.+++|+| ||++|++|+.||+|++||+..+.. ...+ .+|..+|.+++|+||| +++++ .|+.|
T Consensus 133 ~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass----~D~tV 204 (588)
T 2j04_A 133 HCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL----SNNSV 204 (588)
T ss_dssp EEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE----TTCCE
T ss_pred EEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe----CCCeE
Confidence 9999977 779999999999999999988653 3444 5566799999999999 66665 38999
Q ss_pred EEEeCCCCce---eeEec-cccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEE--cCC
Q 001190 567 VEWNESEGTI---KRTYA-GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF--SKE 640 (1128)
Q Consensus 567 ~~wd~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--sp~ 640 (1128)
++||+.++.. .+++. +|. ..|..++|+ ++.|++++ ++.|++||..+++...... ++...|..++| +|+
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d 278 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASR-RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSS
T ss_pred EEEECCCCccccceeeeccccc-CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCC
Confidence 9999988874 35664 554 489999999 68888887 6999999999888744433 35568999999 999
Q ss_pred CCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCC
Q 001190 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP 720 (1128)
Q Consensus 641 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1128)
+..+++++.+|+ ++|..+ .++++||+..++
T Consensus 279 ~~~La~a~edG~-klw~~d----------------------~~~~spd~~l~a--------------------------- 308 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED----------------------ELHVTADNIIAP--------------------------- 308 (588)
T ss_dssp CEEEEECSSCEE-EEEESS----------------------SEEEECCCSSHH---------------------------
T ss_pred CCEEEEEcCCCC-EEEeec----------------------cEEECCCceEEE---------------------------
Confidence 999999999999 999875 145777777653
Q ss_pred CCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeec
Q 001190 721 TSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 784 (1128)
Q Consensus 721 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 784 (1128)
. .|+++++|+.... ... . ..+...|.+++|+|||+.+++++.
T Consensus 309 ----------~--~d~~v~lW~~~g~----~l~-----~-~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 309 ----------Y--LEKKFKKWSTIWN----EFN-----N-YETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ----------H--HHHHHHHTTTTTT----SSS-----S-SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred ----------E--cCCEEEEEECCCC----cee-----e-eccceEEEEEEECCCCCEEEEEEe
Confidence 2 2578888876321 111 1 113556999999999998888765
No 72
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-34 Score=327.71 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=224.9
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCC--ceecccccccccccccCccccceeccCCCcceEEEEEccCCCE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 420 (1128)
+.+.|++++|+|+|+ +||+|+.|+.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 567899999999999 7899999999999999987 3332 37789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC---eEEEecC-CCC
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEG-HEA 495 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~---~~~~~~~-h~~ 495 (1128)
|++|+.|+.|++||+.+++.......+.+|...|++++|+|+++ +|++|+.|+.|++|| .+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999999873333335778999999999999999 799999999999999 6655 4677887 999
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCC------------------CCceeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------------------MGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~------------------~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
.|.+++|++ ++.+|++++.|+.|++||+.. ......+ .|...|.+++|+|+|++|++++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 999999987 668999999999999999853 2233344 7788999999999999999998
Q ss_pred eccCCCceEEEEeCCCCce----eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee--------------
Q 001190 558 TSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-------------- 619 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~-------------- 619 (1128)
.++.|++||+.+++. +..+.+|.. .+.+++|+|++++|++++.++.+ +|+......
T Consensus 225 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 ----HDSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp ----TTTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred ----CCCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 489999999999987 788888876 89999999999988888766655 666542110
Q ss_pred -------------------------eEEEec-----------CCCCCCcceEEEcCC-CC---EEEEEEcCCcEEEEEc
Q 001190 620 -------------------------LTSTDA-----------EGGLPNLPRLRFSKE-GN---LLAVTTADNGFKILAN 658 (1128)
Q Consensus 620 -------------------------~~~~~~-----------~~~~~~v~~v~~sp~-~~---~l~~~~~dg~i~iw~~ 658 (1128)
...... ..|...|.++++.+. +. .+++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000000 115567899987654 33 6999999999999984
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-32 Score=306.42 Aligned_cols=303 Identities=12% Similarity=0.156 Sum_probs=246.7
Q ss_pred ceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 399 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
...+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+. .+.+|...|++++|+|+++ +|++++.|+.|+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~ 99 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIK 99 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEE
Confidence 34588999999999999999999999999999999999988765 5789999999999999999 899999999999
Q ss_pred EEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc-----CcEEEEecCCCCc-----------eeeecCCCC--
Q 001190 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGS-----------RVDYDAPGH-- 539 (1128)
Q Consensus 479 vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~-----------~~~~~~~~~-- 539 (1128)
+|| .+++.+..+. |...|.+++|++ ++.++++++.+ |.|++||+..... ...+..+..
T Consensus 100 iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD 176 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred EEECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence 999 8888888888 888999999977 66899999998 9999999977643 223334444
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC-CceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
.+.+++|+|+++++++++ .++.|++||+.+ ++.+..+..|.. .+.+++|+|++++|++++.||.|++||+.+++
T Consensus 177 ~~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGH----KDGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp CEEEEEECGGGCEEEEEE----TTSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ceeEEEEcCCCCEEEEEc----CCCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 899999999999999987 489999999999 788888888876 89999999999999999999999999999999
Q ss_pred eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCC
Q 001190 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1128)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 698 (1128)
.+..+.. ...+.+++|+|+++++++++.++.+.+|.......
T Consensus 252 ~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------------------- 293 (369)
T 3zwl_B 252 VLKKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEG----------------------------------- 293 (369)
T ss_dssp EEEEEEC---SSCEEEEEECSSSSEEEEEECCC-----------------------------------------------
T ss_pred eeeeecC---CCCceeEEecCCCceEEEeecCCCceEEEEecCCC-----------------------------------
Confidence 9888873 33689999999999999999998555543322100
Q ss_pred CcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcce
Q 001190 699 ANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (1128)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 778 (1128)
...+++|+.... . ....+ .+|...|.+++|+|++++
T Consensus 294 ------------------------------------~~~i~~~d~~~~----~-~~~~~---~~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 294 ------------------------------------KFEARFYHKIFE----E-EIGRV---QGHFGPLNTVAISPQGTS 329 (369)
T ss_dssp -------------------------------------CEEEEEETTTC----C-EEEEE---ECCSSCEEEEEECTTSSE
T ss_pred ------------------------------------cceeEEEecCCC----c-chhhe---ecccCcEEEEEECCCCCE
Confidence 012233332210 0 01112 238889999999999999
Q ss_pred EEEeeccceeEeeecccc
Q 001190 779 LLALGSNGVQKLWKWHRN 796 (1128)
Q Consensus 779 l~~~~~dg~i~lw~~~~~ 796 (1128)
|++++.||.|++|++...
T Consensus 330 l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEEEETTSEEEEEEECHH
T ss_pred EEEEcCCCeEEEEECccc
Confidence 999999999999998653
No 74
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.7e-33 Score=320.30 Aligned_cols=350 Identities=15% Similarity=0.187 Sum_probs=246.7
Q ss_pred CceEEEEeCCCCceeeEeccccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCCeeeEEEec-----------CCCCC
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDA-----------EGGLP 630 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~ 630 (1128)
+..+++|+...++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....+.. .++..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 44577888888888888888876 899999999 999999999999999999998766554431 23556
Q ss_pred CcceEEEcC-CCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCC
Q 001190 631 NLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1128)
Q Consensus 631 ~v~~v~~sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 709 (1128)
.|.+++|+| ++.++++++.||.|++||+.++.. ...
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~------------------------------------------ 137 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADV------------------------------------------ 137 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEE------------------------------------------
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-cee------------------------------------------
Confidence 899999999 778999999999999999865410 000
Q ss_pred CCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeE
Q 001190 710 RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQK 789 (1128)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 789 (1128)
T Consensus 138 -------------------------------------------------------------------------------- 137 (408)
T 4a11_B 138 -------------------------------------------------------------------------------- 137 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc---CCCeEEEEe-CCeEEEEECCCceEE
Q 001190 790 LWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK---NDSYVMSAT-GGKISLFNMMTFKVM 865 (1128)
Q Consensus 790 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---dg~~la~~~-dg~i~vwd~~~~~~~ 865 (1128)
+ .+...+.++++++ ++.++++++ ++.|++||+.+++.+
T Consensus 138 -~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 138 -F-------------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp -E-------------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred -c-------------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence 0 0223345555555 445788887 889999999999999
Q ss_pred EEeeCCCCCeeEEEEcCCCCC-EEEEEeCCCcEEEEecccce-eeecc---------------cccccCeeEEEEcCCCC
Q 001190 866 TTFMSPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRVDE-VKSKL---------------KGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 866 ~~~~~~~~~v~~l~~s~~d~~-~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~s~d~~ 928 (1128)
..+.+|...|.+++|+| ++. ++++|+.||.|++||+.++. .+..+ .+|...|.+++|+|+++
T Consensus 180 ~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 258 (408)
T 4a11_B 180 HILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258 (408)
T ss_dssp EEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred eeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence 99999999999999999 666 69999999999999998764 22222 67999999999999999
Q ss_pred EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCC
Q 001190 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSA 1008 (1128)
Q Consensus 929 ~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~ 1008 (1128)
+|++++.||.|++||+.+++....................+.....+.+++++.++.|++||+.+++.+..+..+ ..
T Consensus 259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~ 335 (408)
T 4a11_B 259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH---YK 335 (408)
T ss_dssp EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC---SS
T ss_pred EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC---CC
Confidence 999999999999999999876544332222222223333344455566777778999999999999998888765 88
Q ss_pred CeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEE
Q 001190 1009 PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1088 (1128)
Q Consensus 1009 ~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~i 1088 (1128)
.|.+++|+||+++|++++.||.|++||+.+++.+...... .....+.+.....+.+++.|+.+++
T Consensus 336 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (408)
T 4a11_B 336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET---------------TTKSQLNPAFEDAWSSSDEEGGTSA 400 (408)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEECC--------------------------------------------------
T ss_pred eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce---------------EeccccccccceeecccCccCceee
Confidence 9999999999999999999999999999999876655411 1123344545667888999999999
Q ss_pred EcCCC
Q 001190 1089 MEPSE 1093 (1128)
Q Consensus 1089 Wd~~~ 1093 (1128)
|+...
T Consensus 401 W~~~~ 405 (408)
T 4a11_B 401 WSHPQ 405 (408)
T ss_dssp -----
T ss_pred cCCcc
Confidence 97653
No 75
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-33 Score=322.34 Aligned_cols=296 Identities=13% Similarity=0.185 Sum_probs=241.5
Q ss_pred cceEEee--cCCCcEEEEEEeC-CCCcEEEEeeccCeEEEEEccC---CceecccccccccccccCccccceeccCCCcc
Q 001190 335 RTVAVSL--HQGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAM---RDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (1128)
Q Consensus 335 ~~~~~~~--~h~~~V~~v~fsp-dg~~lla~gs~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 408 (1128)
..+...+ +|.+.|++++|+| +|+ +||+|+.||+|+|||+.+ +.... .....+|.+.
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~-----------------~~~~~~h~~~ 113 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYS-----------------SSLTYDCSST 113 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCS-----------------CSEEEECSSC
T ss_pred ceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccc-----------------eeeeccCCCC
Confidence 4555555 4899999999999 998 789999999999999977 33211 0112259999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEEcc---CCCcceece-------eecc--cccceeEEE--EecCCCeEEEEEecCC
Q 001190 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYA---GSNDLRQHS-------QIDA--HVGAVNDLA--FAYPNKLLCVVTCGDD 474 (1128)
Q Consensus 409 V~~l~~spdg~~las~~~d~~i~vwd~~---~~~~~~~~~-------~~~~--h~~~v~~l~--fs~d~~~~~l~s~s~d 474 (1128)
|.+++|+|++++|++|+.||.|++||+. +++.+.... .+.. +...+.++. +++++. +|++|+.|
T Consensus 114 v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d 191 (437)
T 3gre_A 114 VTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS--LLVALTNL 191 (437)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE--EEEEEETT
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC--EEEEEeCC
Confidence 9999999999999999999999999995 554433110 1112 556677777 557788 89999999
Q ss_pred CeEEEEe-cCCCeEEEecC--CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-CCCCeEEEEEEc---
Q 001190 475 KLIKVWE-LSGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYS--- 547 (1128)
Q Consensus 475 ~~i~vWd-~~g~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~~~~s--- 547 (1128)
+.|++|| .+++.+..+.+ |.+.|++++|++ ++.+|++|+.||.|++||++.......+. .+...|.+++++
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 269 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY 269 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecccc
Confidence 9999999 89999999998 899999999977 57899999999999999999877777765 566799999665
Q ss_pred -CCCCeEEEeeeccCCCceEEEEeCCCCceeeEecccc-------------------------CCceeEEEEeCCCCEEE
Q 001190 548 -ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-------------------------KKSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 548 -~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-------------------------~~~v~~~~~~~~~~~l~ 601 (1128)
+++.++++++ .|+.|++||+.+++.+..+.+|. ...+.+++|+ ++++|+
T Consensus 270 s~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~ 344 (437)
T 3gre_A 270 GKNSVIVVGGS----SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL 344 (437)
T ss_dssp CTTEEEEEEES----TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred CCCccEEEEEc----CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence 5677888887 48999999999999888887652 2357889999 778999
Q ss_pred EEECCCcEEEEECCCCeeeEEEecCC-----------------------------------CCCCcceEEEcCC--CCEE
Q 001190 602 AVGEDSQIKFWDMDNVNILTSTDAEG-----------------------------------GLPNLPRLRFSKE--GNLL 644 (1128)
Q Consensus 602 ~~s~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~v~~sp~--~~~l 644 (1128)
+|+.||.|++||+.+++....+..+. |...|.+++|+++ +.+|
T Consensus 345 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l 424 (437)
T 3gre_A 345 TDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLL 424 (437)
T ss_dssp EEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEE
T ss_pred ecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEE
Confidence 99999999999999998777766431 5668999999998 7899
Q ss_pred EEEEcCCcEEEEE
Q 001190 645 AVTTADNGFKILA 657 (1128)
Q Consensus 645 ~~~~~dg~i~iw~ 657 (1128)
++|+.||.|++|+
T Consensus 425 ~s~~~dG~I~iw~ 437 (437)
T 3gre_A 425 VACDNSGLIGIFQ 437 (437)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEcCCceEEEeC
Confidence 9999999999994
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-32 Score=311.63 Aligned_cols=290 Identities=14% Similarity=0.228 Sum_probs=243.7
Q ss_pred cCCCc--EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001190 342 HQGST--VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1128)
Q Consensus 342 ~h~~~--V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1128)
+|.+. +.+++|++ .. +++++.|+.|+|||+.+++.... ....|...|.+++|+|+|+
T Consensus 89 ~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGS 147 (401)
T ss_dssp TCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSS
T ss_pred CCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCC
Confidence 45555 44555554 43 46677999999999999886542 1334899999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c-CCCeEEEecCCCCCe
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFEGHEAPV 497 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~-~g~~~~~~~~h~~~v 497 (1128)
+|++|+.||.|++||+.+++.+. .+.+|...|.+++|. +. ++++|+.|+.|++|| . .+..+..+.+|.+.|
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 99999999999999999988666 577999999999994 55 799999999999999 4 577788999999999
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
.+++|++ ++.+|++++.||.|++||++.......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+
T Consensus 221 ~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 221 CGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEE
T ss_pred eEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEE
Confidence 9999987 6789999999999999999998888888889999999999998876665431 113899999999999999
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEE--CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 655 (1128)
..+..+ ..+.+++|+|+++++++++ .||.|++||+.+++........++...|.+++|+|++++|++++.||.|++
T Consensus 298 ~~~~~~--~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 298 NTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375 (401)
T ss_dssp EEEECS--SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred EEEeCC--CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 888643 3699999999999999954 899999999999877766554556668999999999999999999999999
Q ss_pred EEcccCccc
Q 001190 656 LANAIGLRS 664 (1128)
Q Consensus 656 w~~~~~~~~ 664 (1128)
|++.++...
T Consensus 376 w~~~~~~~~ 384 (401)
T 4aez_A 376 WRVYDGDHV 384 (401)
T ss_dssp EECCC----
T ss_pred EECCCCccc
Confidence 999887443
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.1e-32 Score=310.57 Aligned_cols=282 Identities=15% Similarity=0.254 Sum_probs=241.4
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
..+.++||+++ +||+|. |++|+|||+.+|+.... ..+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~-----------------~~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQL-----------------LQMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEE-----------------EECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEE-----------------EEecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999875 778874 99999999999987642 12567889999999999999999999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCCCCeEEEecc
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~~v~~~~~~ 503 (1128)
.||.|+|||+.+++.++ .+.+|...|.+++|. +. +|++|+.|+.+++|| .....+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999998766 578999999998875 55 799999999999999 4456678899999999999997
Q ss_pred CCCCccEEEEEeccCcEEEEecCCCCc----eeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 504 HKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
+ ++.++++++.|+.+++|+...... ......+...|.+++|+|++..+++.+. +..|+.|++||+.+++....
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~-gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE-CTTTCEEEEEETTTTEEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe-ecCCCEEEEEeCCcccccee
Confidence 6 668999999999999999987653 3456677889999999998765554321 12589999999999999998
Q ss_pred eccccCCceeEEEEeCCCCEEEEEE--CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 580 YAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
+..+. .+..+.|+++++.+++++ .||.|+|||+.+++.+..+..| ...|.+++|+|||++|++|+.|++|++||
T Consensus 317 ~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 317 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred ecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 88765 588899999999998876 7999999999999999988755 55899999999999999999999999999
Q ss_pred cccC
Q 001190 658 NAIG 661 (1128)
Q Consensus 658 ~~~~ 661 (1128)
+...
T Consensus 393 v~~~ 396 (420)
T 4gga_A 393 CFEL 396 (420)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 8764
No 78
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6e-33 Score=321.94 Aligned_cols=303 Identities=15% Similarity=0.197 Sum_probs=232.0
Q ss_pred eeEeccccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCCEEEEEEcCCcEE
Q 001190 577 KRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFK 654 (1128)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~~dg~i~ 654 (1128)
.....+|.. .|++++|+| +++.|++|+.||.|+|||+.+++....+...+|...|.+++|+| ++.+|++++.||+|+
T Consensus 112 ~~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 112 LQKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CCEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 344455554 799999999 45789999999999999999887777776667778999999998 789999999999999
Q ss_pred EEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCC
Q 001190 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDV 734 (1128)
Q Consensus 655 iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 734 (1128)
+||+.++. ...+
T Consensus 191 iwd~~~~~--~~~~------------------------------------------------------------------ 202 (435)
T 4e54_B 191 LQDFKGNI--LRVF------------------------------------------------------------------ 202 (435)
T ss_dssp EEETTSCE--EEEE------------------------------------------------------------------
T ss_pred EeeccCCc--eeEE------------------------------------------------------------------
Confidence 99975431 0000
Q ss_pred CCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceec
Q 001190 735 TDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWL 814 (1128)
Q Consensus 735 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~ 814 (1128)
... +
T Consensus 203 ----------------------------------------------~~~-~----------------------------- 206 (435)
T 4e54_B 203 ----------------------------------------------ASS-D----------------------------- 206 (435)
T ss_dssp ----------------------------------------------ECC-S-----------------------------
T ss_pred ----------------------------------------------ecc-C-----------------------------
Confidence 000 0
Q ss_pred cCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeC
Q 001190 815 PSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1128)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~ 893 (1128)
.+...+.+++|+|++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.
T Consensus 207 --------------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 207 --------------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp --------------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred --------------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 0233466788888888888887 7889999985 45667788899999999999955568999999
Q ss_pred CCcEEEEecccceeeec---ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEE
Q 001190 894 DSTIHIYNVRVDEVKSK---LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 970 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~---l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~ 970 (1128)
|+.|+|||+.+++.... ..+|...|++++|+|+|.+|++++.||.|+|||+.+++.......+..............
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 99999999988765443 467999999999999999999999999999999999876554433322221113344567
Q ss_pred EcCCCCEEEEEe-------------cCeEEEEecCCcccccccccCCCCCCCeEEE-EEeeCCCEEEEEecCCcEEEEec
Q 001190 971 FNADQVRMLVVH-------------ETQLAIYDASKMERIRQWTPQDALSAPISCA-VYSCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 971 ~s~d~~~l~~~~-------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l-~~s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
|+|++.+++++. ++.|++||..+++.+..+..+ |...|.++ +|+|||++|++|+ |+.|+||++
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~--~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP--ESSGISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS--SCCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC--CCCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 777777776642 357999999999988776543 37788887 6999999999876 889999999
Q ss_pred CCCceE
Q 001190 1037 DTLRLR 1042 (1128)
Q Consensus 1037 ~~~~~~ 1042 (1128)
++|+.+
T Consensus 429 ~~gk~r 434 (435)
T 4e54_B 429 QEARTR 434 (435)
T ss_dssp C-----
T ss_pred CcCeee
Confidence 998753
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.3e-32 Score=297.69 Aligned_cols=252 Identities=19% Similarity=0.292 Sum_probs=212.4
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~ 478 (1128)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++.. +...++.+|.++|++++|+++ ++ +|+||+.|++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEE
Confidence 4788999999999999999999999999999999975421 122368899999999999864 77 899999999999
Q ss_pred EEe-cCCC--eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc--eeeecCCCCeEEEEEEcCC----
Q 001190 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSAD---- 549 (1128)
Q Consensus 479 vWd-~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~i~~~~~s~~---- 549 (1128)
+|| .+++ .+..+.+|...|.+++|+|..++.+|++++.|+.|++||++.... ...+..|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 999 6663 567788999999999998865578999999999999999987542 3566788889999999997
Q ss_pred ---------CCeEEEeeeccCCCceEEEEeCCCCc----eeeEeccccCCceeEEEEeCCC---CEEEEEECCCcEEEEE
Q 001190 550 ---------GSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWD 613 (1128)
Q Consensus 550 ---------g~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd 613 (1128)
+++|++++. |+.|++||+++++ ....+.+|.. .|.+++|+|++ .+|++++.|+.|++||
T Consensus 161 ~~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ---------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 568888884 8999999998776 6677888887 89999999984 7999999999999999
Q ss_pred CCCCe---eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 614 MDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 614 ~~~~~---~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
+.+.. ....+....+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 97743 112232234456799999999999999999999999999753
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.1e-32 Score=334.28 Aligned_cols=249 Identities=20% Similarity=0.275 Sum_probs=215.2
Q ss_pred eeccCCCcceEEEEEccCC-CEEEEEeCCCeEEEEEccCCCcc--eeceeecccccceeEEEEecCCCeEEEEEecCCCe
Q 001190 400 SIFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg-~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~ 476 (1128)
..+.+|.+.|++++|+|++ ++|++|+.|++|++||+.++... .....+.+|...|++++|+|+++ +|++|+.|++
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~ 453 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGE 453 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCc
Confidence 3588999999999999975 79999999999999999865432 12235789999999999999999 8999999999
Q ss_pred EEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee---cCCCCeEEEEEEcCCC--
Q 001190 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSADG-- 550 (1128)
Q Consensus 477 i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~i~~~~~s~~g-- 550 (1128)
|++|| .++..+..+.+|...|.+++|++ ++.+|++++.|++|++||.......... ..|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 99999 88999999999999999999977 6689999999999999997543322221 3466789999999987
Q ss_pred CeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCC
Q 001190 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 551 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
..+++++ .|+.|++||+.+++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ .
T Consensus 532 ~~l~s~s----~d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~ 603 (694)
T 3dm0_A 532 PTIVSAS----WDKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---S 603 (694)
T ss_dssp CEEEEEE----TTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---S
T ss_pred ceEEEEe----CCCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---C
Confidence 4678877 489999999999999999999987 8999999999999999999999999999999988776543 3
Q ss_pred CcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.|.+++|+|++.++++++ ++.|++||+.++
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 689999999998888776 566999999876
No 81
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=319.15 Aligned_cols=298 Identities=14% Similarity=0.223 Sum_probs=233.7
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC------------cc
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP------------IS 408 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~ 408 (1128)
+.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ........+.+|. ..
T Consensus 25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCc
Confidence 56788999999999999 789999999999999988763110000 0000123477898 88
Q ss_pred eEEEEEccCC--CEEEEEeCCCeEEEEEccCCCccee------------------------------------c-eeecc
Q 001190 409 VSRVAWSPDG--NYVGVAFTKHLIQLYSYAGSNDLRQ------------------------------------H-SQIDA 449 (1128)
Q Consensus 409 V~~l~~spdg--~~las~~~d~~i~vwd~~~~~~~~~------------------------------------~-~~~~~ 449 (1128)
|.+++|+|++ .+|++++.|+.|++||+.+++.... . ....+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 8999999999999999987443100 0 11368
Q ss_pred cccceeEEEEecCCCeEEEEEecCCCeEEEEe-c-CCCeEE-------EecCCCCCeEEEeccCCCCc-cEEEEEeccCc
Q 001190 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLF-------NFEGHEAPVYSICPHHKENI-QFIFSTAIDGK 519 (1128)
Q Consensus 450 h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~-~g~~~~-------~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~ 519 (1128)
|...|++++|+|+++ +|++| .|+.|++|| . .++.+. .+.+|...|.+++|++ ++ .+|++++.||.
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGT 250 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSC
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCe
Confidence 999999999999999 78888 799999999 4 344444 3678999999999987 44 79999999999
Q ss_pred EEEEecCCCCc----eeeecCCCC------------eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC-CceeeEecc
Q 001190 520 IKAWLYDTMGS----RVDYDAPGH------------WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAG 582 (1128)
Q Consensus 520 i~~wd~~~~~~----~~~~~~~~~------------~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~ 582 (1128)
|++||++.... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+.+ ++.+..+.+
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEES
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeec
Confidence 99999998776 567777765 899999999999999886 38999999997 888888888
Q ss_pred ccCCc--------------eeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC----------------------
Q 001190 583 FRKKS--------------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE---------------------- 626 (1128)
Q Consensus 583 ~~~~~--------------v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~---------------------- 626 (1128)
|.... +..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccc
Confidence 75310 223899999999999999999999999998876422110
Q ss_pred --------CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 627 --------GGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 627 --------~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
.....|..++|+|++++||+++.++ +++|..
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2234678899999999999998775 777764
No 82
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.7e-32 Score=295.84 Aligned_cols=249 Identities=14% Similarity=0.194 Sum_probs=206.4
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC--C
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 418 (1128)
.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+|+ |
T Consensus 6 ~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~-----------------~~~~l~gH~~~V~~v~~s~~~~g 67 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHK-----------------LIDTLTGHEGPVWRVDWAHPKFG 67 (297)
T ss_dssp CSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBC-----------------CCEEECCCSSCEEEEEECCGGGC
T ss_pred cCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcE-----------------EEEEEccccCCeEEEEecCCCcC
Confidence 36999999999999999 7899999999999999754211 11248899999999999864 8
Q ss_pred CEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEEEEe-cCCC--eEEEecCC
Q 001190 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGH 493 (1128)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~vWd-~~g~--~~~~~~~h 493 (1128)
++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ |. +|++++.|++|++|| .++. ....+.+|
T Consensus 68 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp SEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred CEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 99999999999999999987522 22257789999999999998 77 899999999999999 5443 24677899
Q ss_pred CCCeEEEeccCCC-----------CccEEEEEeccCcEEEEecCCCC----ceeeecCCCCeEEEEEEcCCC---CeEEE
Q 001190 494 EAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSADG---SRLFS 555 (1128)
Q Consensus 494 ~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~~i~~~~~s~~g---~~l~~ 555 (1128)
...|.+++|+|.. ++++|++|+.|++|++||++... ....+..|...|.+++|+|++ .+|++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 9999999998752 35799999999999999998766 345677899999999999995 78888
Q ss_pred eeeccCCCceEEEEeCCCCce---eeEe--ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECC
Q 001190 556 CGTSKDGDSFLVEWNESEGTI---KRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 615 (1128)
++ .|+.|++||+.++.. ...+ ..|.. .+.+++|+|++++|++++.||.|++|+..
T Consensus 225 ~s----~D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 225 VS----QDRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EE----TTSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EE----CCCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 87 499999999987531 1222 34443 78999999999999999999999999976
No 83
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.4e-32 Score=310.85 Aligned_cols=252 Identities=9% Similarity=0.070 Sum_probs=216.8
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCc---ceeceeecccccceeEEEEecC----C---CeEEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYP----N---KLLCVV 469 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~---~~~~~~~~~h~~~v~~l~fs~d----~---~~~~l~ 469 (1128)
..+.+|.+.|++++|+| ++|++|+.||.|++||+.+++. ......+.+|...|++++|+|+ + + +|+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~ 85 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVA 85 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEE
Confidence 45889999999999999 8999999999999999999871 1112257799999999999999 8 8 899
Q ss_pred EecCCCeEEEEe-cCCCe-----EEEecCC-----CCCeEEEeccCC--CCccE-EEEEeccCcEEEEecCC------CC
Q 001190 470 TCGDDKLIKVWE-LSGRK-----LFNFEGH-----EAPVYSICPHHK--ENIQF-IFSTAIDGKIKAWLYDT------MG 529 (1128)
Q Consensus 470 s~s~d~~i~vWd-~~g~~-----~~~~~~h-----~~~v~~~~~~~~--~~~~~-l~s~~~dg~i~~wd~~~------~~ 529 (1128)
+++.|+.|++|| .+++. +..+.+| ...|.+++|++. +++.+ |++++.||.|++||+.. ..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999 77776 8888888 589999999822 36788 99999999999999988 55
Q ss_pred cee-----ee-------cCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc---c---cCCceeEE
Q 001190 530 SRV-----DY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F---RKKSNGVV 591 (1128)
Q Consensus 530 ~~~-----~~-------~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~~v~~~ 591 (1128)
... .+ ..+...|.+++|+|++ ++++++ .++.|++||+++++.+..+.. | .. .+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~~i 239 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF----NNGTVQISELSTLRPLYNFESQHSMINNSN-SIRSV 239 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC----TTSEEEEEETTTTEEEEEEECCC---CCCC-CEEEE
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe----CCCcEEEEECCCCceeEEEeccccccccCC-ccceE
Confidence 544 55 4477789999999999 888887 489999999999999999998 7 55 89999
Q ss_pred EEeCCCCEEEEEECC---CcEEEEECCCCeeeEEEecCC-----------CCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 592 QFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 592 ~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
+|+|++++|++++.| |.|++||+.+++.+..+.... +...|.+++|+|++++|++++.||.|++||
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999 999999999999888887511 345899999999999999999999999999
Q ss_pred cccC
Q 001190 658 NAIG 661 (1128)
Q Consensus 658 ~~~~ 661 (1128)
+.++
T Consensus 320 ~~~~ 323 (397)
T 1sq9_A 320 VKTK 323 (397)
T ss_dssp TTTT
T ss_pred cCCC
Confidence 9876
No 84
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2e-31 Score=303.13 Aligned_cols=244 Identities=15% Similarity=0.133 Sum_probs=214.5
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCC--cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
+..|.++|++++|+|+|++||+|+.|+.|++||+.+++ .+. .+.+|...|++++|+|+++ +|++++.|+.|++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~v 78 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH---ELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYV 78 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE---EEECCSSCEEEEEEETTTT--EEEEEETTSCEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee---eecCCCCcccEEEEeCCCC--EEEEEcCCCeEEE
Confidence 55599999999999999999999999999999999876 343 5779999999999999999 8999999999999
Q ss_pred Ee-cCCCeEE--EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc----eeeecCCCCeEEEEEEcCCCCe
Q 001190 480 WE-LSGRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSR 552 (1128)
Q Consensus 480 Wd-~~g~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~i~~~~~s~~g~~ 552 (1128)
|| .+++... .+.+|...|.+++|++ ++.+|++++.||.|++||++.... ......+...|.+++|+|++++
T Consensus 79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 79 WTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred EECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 99 6666443 4477999999999977 668999999999999999988764 2233556789999999999999
Q ss_pred EEEeeeccCCCceEEEEeC------------------CCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 553 LFSCGTSKDGDSFLVEWNE------------------SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
+++++ .++.|++||+ ..++.+..+.+|.. .+.+++|+|++++|++++.||.|++||+
T Consensus 157 l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 157 LAAGS----CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEEEE----TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEEEc----CCCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 99988 4899999995 46788888888776 8999999999999999999999999999
Q ss_pred CCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
.+++.+..+..+. ..|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 232 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 232 DKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999988887554 479999999999988887 899999999987
No 85
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.2e-31 Score=306.96 Aligned_cols=302 Identities=16% Similarity=0.189 Sum_probs=241.7
Q ss_pred eecCCCcEEEEEEeC-CCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-C
Q 001190 340 SLHQGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-D 417 (1128)
Q Consensus 340 ~~~h~~~V~~v~fsp-dg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d 417 (1128)
..+|.+.|++++|+| +|+ +|++|+.||.|+|||+.+++.......... .........+|...|.+++|+| +
T Consensus 39 ~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp CCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEEECTTC
T ss_pred eeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEEEccCC
Confidence 335999999999999 998 789999999999999998876542111000 0000111356999999999999 7
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEec---CCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~---d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h 493 (1128)
+.+|++++.||.|++||+.+++.+.. + .+...+.++.|++ ++. ++++++.|+.|++|| .+++.+..+.+|
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 185 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQTADV---F-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSHILQGH 185 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEEEEE---E-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCEEECCC
T ss_pred CcEEEEEeCCCeEEEeeCCCCcccee---c-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceeeeecCC
Confidence 88999999999999999999876653 2 4778899999998 445 789999999999999 889999999999
Q ss_pred CCCeEEEeccCCCCcc-EEEEEeccCcEEEEecCCCCce-eee---------------cCCCCeEEEEEEcCCCCeEEEe
Q 001190 494 EAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSR-VDY---------------DAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~-~~~---------------~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
...|.+++|++. +. ++++++.||.|++||++..... ..+ ..+...|.+++|+|++++++++
T Consensus 186 ~~~v~~~~~~~~--~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 186 RQEILAVSWSPR--YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp CSCEEEEEECSS--CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEEECCC--CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 999999999874 45 6999999999999999876522 222 4567789999999999999999
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccC----CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCc
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1128)
+. ++.|++||+.+++....+..+.. ..+........+..+++++.++.|++||+.+++.+..+..+ ...|
T Consensus 264 ~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~v 337 (408)
T 4a11_B 264 GT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH--YKTV 337 (408)
T ss_dssp ET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC--SSCE
T ss_pred cC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC--CCeE
Confidence 84 88999999999887665543321 12222333344567788888999999999999999988755 4589
Q ss_pred ceEEEcCCCCEEEEEEcCCcEEEEEcccCc
Q 001190 633 PRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 633 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
.+++|+|++++|++++.||.|++|++.+..
T Consensus 338 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 338 DCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred EEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 999999999999999999999999998873
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-31 Score=304.37 Aligned_cols=250 Identities=15% Similarity=0.236 Sum_probs=212.6
Q ss_pred eeccCCCcceEEEEEccC----CCEEEEEeCCCeEEEEEccCCCcceeceeec--ccccceeEEEEecC----CCeEEEE
Q 001190 400 SIFKDVPISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYP----NKLLCVV 469 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spd----g~~las~~~d~~i~vwd~~~~~~~~~~~~~~--~h~~~v~~l~fs~d----~~~~~l~ 469 (1128)
.+..+|.+.|++++|+|+ ...+++++.++.|++||+.+++.+..+..+. .|...|++++|+|+ +. +|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~ 89 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLA 89 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEE
Confidence 346689999999999994 4566667777799999999887766543332 36788999999999 55 799
Q ss_pred EecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee---cCCCCeEEEEE
Q 001190 470 TCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTML 545 (1128)
Q Consensus 470 s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~i~~~~ 545 (1128)
+|+.|+.|++|| .+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||++.++....+ ..+...|.+++
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 999999999999 889999999999999999999763 4579999999999999999988877777 67888999999
Q ss_pred EcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc----------------------------ccCCceeEEEEeCCC
Q 001190 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG----------------------------FRKKSNGVVQFDTTQ 597 (1128)
Q Consensus 546 ~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~ 597 (1128)
|+|+++++++++. ++.|++||+.+++....+.. |.. .+.+++|+ +
T Consensus 169 ~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~ 241 (366)
T 3k26_A 169 YDLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--G 241 (366)
T ss_dssp ECTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--T
T ss_pred ECCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--C
Confidence 9999999999984 89999999998876654443 554 79999998 6
Q ss_pred CEEEEEECCCcEEEEECCCCee--------------eEEEecCCCCCCcceEEEcCC--CCEEEEEEcCCcEEEEEcccC
Q 001190 598 NHFLAVGEDSQIKFWDMDNVNI--------------LTSTDAEGGLPNLPRLRFSKE--GNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 598 ~~l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~sp~--~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++++++.||.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred CEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 7999999999999999987643 5555544 447999999999 999999999999999999776
No 87
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.3e-31 Score=291.15 Aligned_cols=280 Identities=15% Similarity=0.264 Sum_probs=235.4
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeC
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 426 (1128)
.++|+||+++ +||+| .|++|+|||+.+|+.+.. ..+.+|...|++++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg-~D~tV~iWd~~tg~~~~~-----------------~~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVA-LDNSVYLWSASSGDILQL-----------------LQMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEE-ETTEEEEEETTTCCEEEE-----------------EECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEE-eCCEEEEEECCCCCEEEE-----------------EEecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999986 67887 599999999999987642 125678999999999999999999999
Q ss_pred CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe--cCCCeEEEecCCCCCeEEEeccC
Q 001190 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHH 504 (1128)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd--~~g~~~~~~~~h~~~v~~~~~~~ 504 (1128)
||+|++||+++++.++ .+.+|...+.++.+ ++. .+++++.++.+++|+ .....+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999998766 57789988877665 456 799999999999999 44566788899999999999966
Q ss_pred CCCccEEEEEeccCcEEEEecCCCCce----eeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 505 KENIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 505 ~~~~~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
++.++++++.||.|++||+.+++.. .....+...|.++.++|++..++.... +..++.|++||..........
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 6689999999999999999876543 345566778999999998876654332 235889999999988877666
Q ss_pred ccccCCceeEEEEeCCCCEEEEEE--CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
.... .+..+.|+++++.+++++ .|+.|++||+.+++.+..+..| ...|.+++|+|++++|++|+.||+|+|||+
T Consensus 238 ~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 5443 588899999999988865 7999999999999999988755 458999999999999999999999999998
Q ss_pred cc
Q 001190 659 AI 660 (1128)
Q Consensus 659 ~~ 660 (1128)
.+
T Consensus 314 ~~ 315 (318)
T 4ggc_A 314 FE 315 (318)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 88
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=315.21 Aligned_cols=223 Identities=9% Similarity=0.012 Sum_probs=181.2
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g 484 (1128)
-...|.+++|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+..+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~~ 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQQ 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCCC
Confidence 457999999999999999999999999 755554 346999999999999998 377777777444
Q ss_pred CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCC-----eEEEEEEcCCCCeEEEeeec
Q 001190 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 485 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-----~i~~~~~s~~g~~l~~~~~~ 559 (1128)
..+..+ .|...|.+++|+| +|.+|++++.||.|++||.+. ....+. +.. .+.+++|||||++|++++
T Consensus 77 ~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs-- 148 (588)
T 2j04_A 77 NGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN-- 148 (588)
T ss_dssp SCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE--
T ss_pred ceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc--
Confidence 444443 4588999999977 778999999999999999544 333444 444 599999999999999998
Q ss_pred cCCCceEEEEeCCCCce-------eeEe----ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeee---EEEec
Q 001190 560 KDGDSFLVEWNESEGTI-------KRTY----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL---TSTDA 625 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~-------~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~---~~~~~ 625 (1128)
.|+.|++||+.++.. +.++ .+|.. .|.+++|+|+| +++++.|+.|++||+.++... ..+..
T Consensus 149 --~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~-~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 149 --EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD-WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp --TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred --CCCEEEEEECCCCccccccceeeeeeecccccccc-cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence 499999999998863 5666 55554 89999999998 889999999999999887742 34432
Q ss_pred CCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 626 ~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++...|.+++|+ ++.|++++ +++|++|++.++
T Consensus 224 -~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 224 -ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp -CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred -cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 334579999999 68999987 699999998776
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.8e-33 Score=315.31 Aligned_cols=242 Identities=14% Similarity=0.105 Sum_probs=201.0
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCC--CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~--~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
+..|.++|++++|+|+|++||+|+.|+.|+|||+.++ +.+. .+.+|.+.|++++|+|+++ +|++++.|++|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 4447789999999999999999999999999999987 4443 5789999999999999999 7999999999999
Q ss_pred Ee-cCCC---eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc---eeeecC-CCCeEEEEEEcCCCC
Q 001190 480 WE-LSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDA-PGHWCTTMLYSADGS 551 (1128)
Q Consensus 480 Wd-~~g~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~-~~~~i~~~~~s~~g~ 551 (1128)
|| .+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||++.... ...+.. |...|.+++|+|+++
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 99 6665 6788889999999999977 668999999999999999988763 556666 888999999999999
Q ss_pred eEEEeeeccCCCceEEEEeCC------------------CCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEE
Q 001190 552 RLFSCGTSKDGDSFLVEWNES------------------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 613 (1128)
+|++++. ++.|++||+. .++++..+ +|.. .+.+++|+|++++|++++.||.|++||
T Consensus 160 ~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 160 LLAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999984 8999999985 35566666 6655 899999999999999999999999999
Q ss_pred CCCCee----eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 614 MDNVNI----LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 614 ~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
+.+++. +..+..+ ...|.+++|+|++++|++++.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999887 5666644 4479999999999999998876666 66554
No 90
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-31 Score=301.64 Aligned_cols=293 Identities=12% Similarity=0.133 Sum_probs=204.4
Q ss_pred ccceeEEEEecCCCeEEEEEecCCC-------eEEEEe-cCCCe----------EEEecCCCCCeEEEeccCCCCccEEE
Q 001190 451 VGAVNDLAFAYPNKLLCVVTCGDDK-------LIKVWE-LSGRK----------LFNFEGHEAPVYSICPHHKENIQFIF 512 (1128)
Q Consensus 451 ~~~v~~l~fs~d~~~~~l~s~s~d~-------~i~vWd-~~g~~----------~~~~~~h~~~v~~~~~~~~~~~~~l~ 512 (1128)
..||++++|+|||+ +|++|+.|. .|++|+ ..+.. ...+.+|...|.++++. +..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~----~~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS----KGIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE----TTEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC----CCEEE
Confidence 45899999999999 899987543 599999 43321 13467788888888763 34677
Q ss_pred EEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee----eEec----ccc
Q 001190 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK----RTYA----GFR 584 (1128)
Q Consensus 513 s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~----~~~~----~~~ 584 (1128)
+|+.++..++|... .++.+++|++.+.... .... ...
T Consensus 88 ~g~~~~~~~l~s~~-----------------------------------~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (365)
T 4h5i_A 88 VGCNENSTKITQGK-----------------------------------GNKHLRKFKYDKVNDQLEFLTSVDFDASTNA 132 (365)
T ss_dssp EECCCCHHHHHHTS-----------------------------------CCCCEEEEEEETTTTEEEEEEEECSSCCCCT
T ss_pred EEECCCccEEEEec-----------------------------------CCCcEEEEEecCCCceEEEeeeeceeecCCc
Confidence 76655444333221 1223333333222110 0000 011
Q ss_pred CCceeEEEEeCCCCEEEEEE--CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCc
Q 001190 585 KKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
...+.+++|+|||+++++++ .|+.|+|||+.+++.+..+..+ ..|.+++|+|||+++++++.+ .+.+|+..++.
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~---~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR---GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS---SCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC---CceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence 12477899999999987655 6899999999999998888633 369999999999999999855 56666654431
Q ss_pred cccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcce
Q 001190 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQ 742 (1128)
Q Consensus 663 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~ 742 (1128)
......
T Consensus 209 ~~~~~~-------------------------------------------------------------------------- 214 (365)
T 4h5i_A 209 CIARKT-------------------------------------------------------------------------- 214 (365)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 110000
Q ss_pred eEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCcccc
Q 001190 743 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 822 (1128)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1128)
. .+|...
T Consensus 215 --------------~---~~~~~~-------------------------------------------------------- 221 (365)
T 4h5i_A 215 --------------D---FDKNWS-------------------------------------------------------- 221 (365)
T ss_dssp --------------C---CCTTEE--------------------------------------------------------
T ss_pred --------------c---CCCCCC--------------------------------------------------------
Confidence 0 013333
Q ss_pred ccccCCCCCCCeeEEEeccCCCeEEEEe-CC----eEEEEECCCceE----EEEeeCCCCCeeEEEEcCCCCCEEEEEeC
Q 001190 823 NDVAGVNLEEAVPCIALSKNDSYVMSAT-GG----KISLFNMMTFKV----MTTFMSPPPASTFLAFHPQDNNIIAIGTE 893 (1128)
Q Consensus 823 ~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg----~i~vwd~~~~~~----~~~~~~~~~~v~~l~~s~~d~~~lasg~~ 893 (1128)
|.+++|+|||+++++++ ++ .+++|++..... ...+.+|...|++++|+| ++++||+|+.
T Consensus 222 -----------v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~ 289 (365)
T 4h5i_A 222 -----------LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASN 289 (365)
T ss_dssp -----------EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEET
T ss_pred -----------EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcC
Confidence 44455555555555444 32 355566554432 345678999999999999 9999999999
Q ss_pred CCcEEEEecccceeeec-ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCC
Q 001190 894 DSTIHIYNVRVDEVKSK-LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 947 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~ 947 (1128)
|++|+|||+.+++++.. +.+|...|++|+|+|||++|||+|.|++|+|||+...
T Consensus 290 D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 290 DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999887 5799999999999999999999999999999999653
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=302.79 Aligned_cols=301 Identities=11% Similarity=0.173 Sum_probs=233.3
Q ss_pred CCcccEEEEEEecCcceEEEee-c---cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEE
Q 001190 762 DTSSKVVRLLYTNSAVGLLALG-S---NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (1128)
Q Consensus 762 ~~~~~i~~l~~s~~g~~l~~~~-~---dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 837 (1128)
+|...|.+++|+|++..+++++ . ||.|++|++.... ....... .|...|.++
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----------------------~~~~~~~--~~~~~v~~~ 71 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----------------------LKLLREI--EKAKPIKCG 71 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----------------------EEEEEEE--EESSCEEEE
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----------------------ccceeee--cccCcEEEE
Confidence 3999999999999997666544 4 8999999875321 1111111 278899999
Q ss_pred EeccC---CCeEEEEe-CCeEEEEECCCce-EEEEeeCCCCCeeEEE------EcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 838 ALSKN---DSYVMSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLA------FHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 838 ~~s~d---g~~la~~~-dg~i~vwd~~~~~-~~~~~~~~~~~v~~l~------~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
+|+|+ |++|++++ ||.|++||+.+++ .+..+.+|...|.+++ |+| ++++|++++.||.|++||+.+++
T Consensus 72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCS
T ss_pred EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCC
Confidence 99999 69999998 8999999999988 8889999999999995 467 89999999999999999999886
Q ss_pred -eeeccccccc----CeeEEE----EcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC---C
Q 001190 907 -VKSKLKGHQK----RITGLA----FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA---D 974 (1128)
Q Consensus 907 -~~~~l~~h~~----~V~~l~----~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~---d 974 (1128)
.+..+..|.+ .|.+++ |++++++|++++.|+.|++||+.+++...... + ...+.+++|+| +
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~-~~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 151 DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN------I-KNGVCSLEFDRKDIS 223 (357)
T ss_dssp SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE------C-SSCEEEEEESCSSSS
T ss_pred CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC------C-CCceEEEEcCCCCCC
Confidence 6777766655 789998 78999999999999999999999977532211 1 26799999999 8
Q ss_pred CCEEEEEe-cCeEEEEecCCcccccccc--cCCCCCCCeEEEEEeeCCC-EEEEEecCCcEEEEecCCCceEEEeCCCCC
Q 001190 975 QVRMLVVH-ETQLAIYDASKMERIRQWT--PQDALSAPISCAVYSCNSQ-LVFATFCDGNIGVFDADTLRLRCYIAPSTY 1050 (1128)
Q Consensus 975 ~~~l~~~~-d~~i~v~d~~~~~~~~~~~--~~~~h~~~v~~l~~s~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~ 1050 (1128)
+.+++++. |+.|++||+.+++.+..+. ....|...|.+++|+|+++ +|++++.||.|++||+.++...........
T Consensus 224 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~ 303 (357)
T 3i2n_A 224 MNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGI 303 (357)
T ss_dssp CCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSC
T ss_pred CCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCC
Confidence 99999875 9999999999888776654 1123589999999999999 899999999999999987654322111000
Q ss_pred CCC-------cccCCCCccceEEEEEecCCCCEEE-EEECCCcEEEEcCCCCC
Q 001190 1051 LSP-------SVLNGSQTVYPLVVAAHPLEPNQFA-IGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1051 ~~~-------~~~~~~~~~~~~~~~~~p~~~~~l~-s~~~dg~i~iWd~~~~~ 1095 (1128)
... ...-..|...+.+++|+| ++.+|+ +++.||.|++||+.+.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 304 EMGVAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCCCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 000 000014566789999999 577776 89999999999998764
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-30 Score=288.86 Aligned_cols=240 Identities=15% Similarity=0.227 Sum_probs=211.1
Q ss_pred eeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~v 479 (1128)
..+.+|.+.|++++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ +|++++.|+.|++
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~ 85 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMING 85 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEE
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEE
Confidence 358899999999999 999999999999999999998876554 4678999999999999999 8999999999999
Q ss_pred Ee-cC---CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcC-CCCeEE
Q 001190 480 WE-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLF 554 (1128)
Q Consensus 480 Wd-~~---g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~ 554 (1128)
|+ .. ++.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.+++++| +++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence 99 33 3567888999999999998 346999999999999998 5666777888999999999988 899999
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
+++ .++.|++|| .++....+...+...+.+++|+|++. +++++.||.|++||+.+++.+..+..+. ..|.+
T Consensus 160 ~~~----~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~ 230 (313)
T 3odt_A 160 TAS----ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFVYC 230 (313)
T ss_dssp EEE----TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SCEEE
T ss_pred EEE----CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ceEEE
Confidence 887 489999999 66777788874555899999999987 9999999999999999999998887554 48999
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 635 v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++|+|++ .+++++.||.|++||+.++
T Consensus 231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 231 IKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEEecCC-CEEEEecCCEEEEEECCCC
Confidence 9999999 5889999999999998765
No 93
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.3e-31 Score=295.69 Aligned_cols=279 Identities=10% Similarity=0.106 Sum_probs=237.5
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC-E
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-Y 420 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~ 420 (1128)
+|.+.|++++|+|+|+ +|++|+.|+.|+|||+.+++... ....+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNV----------------DLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEE----------------EEEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccc----------------cceeeeecCCceEEEEECCCCCcE
Confidence 5999999999999998 78999999999999998876211 0112557999999999999999 9
Q ss_pred EEEEeCCCeEEEEEc-cCCCcceeceeecc--cccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC---------CCeE
Q 001190 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS---------GRKL 487 (1128)
Q Consensus 421 las~~~d~~i~vwd~-~~~~~~~~~~~~~~--h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~---------g~~~ 487 (1128)
|++|+.||.|++||+ .+++.. .+.+ |...|.+++|+| +. ++++++.|+.|++|| .+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSFQ----ALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEE----ECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCceE----eccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 887542 4778 999999999999 87 899999999999999 66 6666
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC-CCc--eeeecCCCCeEEEEEEcC-CCCeEEEeeeccCCC
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGD 563 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~--~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~~~~ 563 (1128)
..+. |...|.+++|++ ++ +++++.|+.|++||++. ... ......+...+.+++|+| +++++++++ .+
T Consensus 145 ~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~----~d 215 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS----ID 215 (342)
T ss_dssp SSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE----TT
T ss_pred eEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe----cC
Confidence 6666 889999999975 33 99999999999999987 443 334556677899999999 999999988 48
Q ss_pred ceEEEEeCCCC------ceeeEeccccC--------CceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCC
Q 001190 564 SFLVEWNESEG------TIKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 564 ~~i~~wd~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
+.|++|++... +....+..|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+ +.
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~ 294 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NE 294 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SS
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc-cC
Confidence 99999999887 77888887753 37899999999999999999999999999999998887654 14
Q ss_pred CCcceEEEcCCCCEEEEEEcCCc-EEEE
Q 001190 630 PNLPRLRFSKEGNLLAVTTADNG-FKIL 656 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l~~~~~dg~-i~iw 656 (1128)
..|.+++ |++++|++++.||. .+.+
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~ 320 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCS
T ss_pred CCceEec--CCCCeEEEEecCCcccccc
Confidence 4788988 99999999999998 4433
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.8e-31 Score=305.55 Aligned_cols=273 Identities=19% Similarity=0.281 Sum_probs=236.7
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
+|...|.|++| +|+ ++++|+.||.|+|||+.+++.+.. +.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEE
Confidence 47788999888 777 789999999999999999887643 7889999999999 88999
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE---EEecCCCCCe
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPV 497 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~---~~~~~h~~~v 497 (1128)
++|+.||.|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++|| .++... ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999998765 5779999999999974 4 799999999999999 666654 6788999999
Q ss_pred EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
.++++ ++.++++|+.||.|++||++++.....+..|...|.++.+ +++++++++ .++.|++||+.+++.+
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~----~dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS----SDNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE----TTSCEEEEETTTCCEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe----CCCeEEEEECCCCCEE
Confidence 99998 4579999999999999999999999999999999999998 467888887 4899999999999999
Q ss_pred eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe---------eeEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001190 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1128)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 648 (1128)
..+.+|.. .+.+++| ++.+|++|+.||.|++||+.++. .+..+..+ ...|.+++| ++.+|++++
T Consensus 330 ~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 330 RVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECC
T ss_pred EEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEe
Confidence 99999887 7888888 78899999999999999997665 56666544 458999999 778999999
Q ss_pred cCCcEEEEEcccCc
Q 001190 649 ADNGFKILANAIGL 662 (1128)
Q Consensus 649 ~dg~i~iw~~~~~~ 662 (1128)
.||.|++||+.+..
T Consensus 403 ~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 403 HDDTILIWDFLNDP 416 (435)
T ss_dssp SSSEEEEEC-----
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998763
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-31 Score=296.10 Aligned_cols=248 Identities=15% Similarity=0.218 Sum_probs=203.7
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--CCC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 419 (1128)
+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+| +++
T Consensus 11 ~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~-----------------~~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQIL-----------------IADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ---CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEECCGGGSS
T ss_pred cccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEE-----------------EEEEcCCCccEEEEEeCCCCCCC
Confidence 6999999999999999 78999999999999998775321 123789999999999986 489
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEEEEe-cCCCe---EEEecCC
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGH 493 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~vWd-~~g~~---~~~~~~h 493 (1128)
+||+|+.|++|++||+.+++.. ....+.+|...|++++|+|+ +. +|++|+.|++|++|| ..+.. ...+.+|
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 9999999999999999987532 22357799999999999998 66 799999999999999 54432 3556789
Q ss_pred CCCeEEEeccCCC---------------CccEEEEEeccCcEEEEecCCCC---ceeeecCCCCeEEEEEEcCCC----C
Q 001190 494 EAPVYSICPHHKE---------------NIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADG----S 551 (1128)
Q Consensus 494 ~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~i~~~~~s~~g----~ 551 (1128)
...|.+++|++.. ++.+|++|+.|+.|++||++... ....+..|...|.+++|+|++ .
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 9999999998752 14689999999999999997542 445677888899999999987 7
Q ss_pred eEEEeeeccCCCceEEEEeCCCCc----eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 615 (1128)
+|++++ .|+.|++|++.+.. ....+..|.. .+.+++|+|++++|++++.||.|++|+..
T Consensus 230 ~las~s----~D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 230 TIASCS----QDGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEE----TTCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEc----CCCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 888888 49999999987631 2234455554 89999999999999999999999999975
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.3e-31 Score=295.68 Aligned_cols=250 Identities=17% Similarity=0.292 Sum_probs=205.0
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~ 478 (1128)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 47889999999999999999999999999999999987532 22368899999999999863 77 799999999999
Q ss_pred EEe-cCC--CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCc---eeeecCCCCeEEEEEEcCC---
Q 001190 479 VWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD--- 549 (1128)
Q Consensus 479 vWd-~~g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~i~~~~~s~~--- 549 (1128)
+|| .++ ..+..+.+|...|.+++|+|+.++.+|++++.|+.|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 999 666 4667888999999999999876678999999999999999987543 2345567778999999998
Q ss_pred --------------CCeEEEeeeccCCCceEEEEeCCCC---ceeeEeccccCCceeEEEEeCCC----CEEEEEECCCc
Q 001190 550 --------------GSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQ 608 (1128)
Q Consensus 550 --------------g~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~ 608 (1128)
+++|++++ .|+.|++||+..+ +.+..+.+|.. .|.+++|+|++ .+|++++.||.
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs----~D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGG----CDNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCB----TTSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEec----CCCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 46888887 4899999999765 46677888876 89999999986 78999999999
Q ss_pred EEEEECCCC---e-eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 609 IKFWDMDNV---N-ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 609 i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
|++|++.+. . ....+.. +...|.+++|+|++++|++++.|+.|++|+...
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999998763 1 1222332 345799999999999999999999999999753
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=4.9e-31 Score=302.94 Aligned_cols=294 Identities=13% Similarity=0.160 Sum_probs=239.6
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc-CCCEEEEEe
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAF 425 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~ 425 (1128)
...++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++||+|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s 101 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASGS 101 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEEE
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEEe
Confidence 456889999876677789999999999965433211 1123788999999999999 999999999
Q ss_pred CCCeEEEEEccCCCcc----eeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe--cCCCCCeE
Q 001190 426 TKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--EGHEAPVY 498 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~--~~h~~~v~ 498 (1128)
.||.|+|||+.++... .....+.+|...|++++|+|++.. +|++++.|++|++|| .+++.+..+ .+|...|.
T Consensus 102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 180 (402)
T 2aq5_A 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY 180 (402)
T ss_dssp TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE
T ss_pred CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE
Confidence 9999999999987421 223367899999999999999843 799999999999999 889999999 88999999
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-cCCCCe-EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~-i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~ 576 (1128)
+++|++ ++.+|++++.||.|++||++++.....+ ..+... +.++.|+|++++++++. +...++.|++||+.+++.
T Consensus 181 ~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 181 SVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CTTCCEEEEEEETTBCSS
T ss_pred EEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cCCCCceEEEEcCccccC
Confidence 999987 6689999999999999999988877777 566654 89999999999888872 111489999999998765
Q ss_pred -eeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCee-eEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE
Q 001190 577 -KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1128)
Q Consensus 577 -~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 653 (1128)
+..........+..++|+|+++++++++ .||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.+
T Consensus 258 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~ 335 (402)
T 2aq5_A 258 PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIA 335 (402)
T ss_dssp CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEE
T ss_pred CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeE
Confidence 4444433334788999999999997654 799999999998874 445544445568999999999988775 56799
Q ss_pred EEEEcccC
Q 001190 654 KILANAIG 661 (1128)
Q Consensus 654 ~iw~~~~~ 661 (1128)
++|++.++
T Consensus 336 ~~~~l~~~ 343 (402)
T 2aq5_A 336 RFYKLHER 343 (402)
T ss_dssp EEEEEETT
T ss_pred EEEEcCCC
Confidence 99999875
No 98
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=1.3e-30 Score=298.91 Aligned_cols=285 Identities=15% Similarity=0.263 Sum_probs=232.6
Q ss_pred Cccc--EEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 763 TSSK--VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 763 ~~~~--i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
|... +..+.++ +..+++++.||.|++|++... ........ .|...|.+++|+
T Consensus 90 ~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~----------------------~~~~~~~~--~~~~~v~~v~~s 143 (401)
T 4aez_A 90 IIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSG----------------------SVSALAET--DESTYVASVKWS 143 (401)
T ss_dssp CCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTC----------------------CEEEEEEC--CTTCCEEEEEEC
T ss_pred CcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCC----------------------cEeEeeec--CCCCCEEEEEEC
Confidence 4444 3445555 466889999999999986532 21111111 278889999999
Q ss_pred cCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecc-cceeeecccccccCe
Q 001190 841 KNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VDEVKSKLKGHQKRI 918 (1128)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~~l~~h~~~V 918 (1128)
|++++|++++ ||.|++||+.+++.+..+.+|...|.+++|+ +.++++|+.||.|++||+. .+..+..+.+|.+.|
T Consensus 144 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 144 HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred CCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 9999999998 8999999999999999999999999999994 4699999999999999998 567788899999999
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCE-EEEEe---cCeEEEEecCCc
Q 001190 919 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR-MLVVH---ETQLAIYDASKM 994 (1128)
Q Consensus 919 ~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~-l~~~~---d~~i~v~d~~~~ 994 (1128)
.+++|+|++++|++++.|+.|++||+.+++....+ ..+. ..+.+++|+|++.. +++++ |+.|++||+.++
T Consensus 221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-----~~~~-~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK-----TNHN-AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE-----CCCS-SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred eEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe-----cCCc-ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 99999999999999999999999999987654332 2232 78999999998754 44453 899999999999
Q ss_pred ccccccccCCCCCCCeEEEEEeeCCCEEEEE--ecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecC
Q 001190 995 ERIRQWTPQDALSAPISCAVYSCNSQLVFAT--FCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1072 (1128)
Q Consensus 995 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1072 (1128)
+.+..+.. ...|.+++|+|++++++++ +.||.|+|||+.+++....... ..|...+.+++|+|
T Consensus 295 ~~~~~~~~----~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~----------~~h~~~v~~~~~s~- 359 (401)
T 4aez_A 295 ARVNTVDA----GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI----------PAHDTRVLYSALSP- 359 (401)
T ss_dssp CEEEEEEC----SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE----------ECCSSCCCEEEECT-
T ss_pred CEEEEEeC----CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe----------cCCCCCEEEEEECC-
Confidence 88887753 6789999999999999994 4899999999999766554331 14566778999999
Q ss_pred CCCEEEEEECCCcEEEEcCCCCCCC
Q 001190 1073 EPNQFAIGLTDGSVKVMEPSESEGK 1097 (1128)
Q Consensus 1073 ~~~~l~s~~~dg~i~iWd~~~~~~~ 1097 (1128)
++.+|++++.||.|++|++.+++..
T Consensus 360 dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 360 DGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp TSSEEEEECTTSEEEEEECCC----
T ss_pred CCCEEEEEeCCCcEEEEECCCCccc
Confidence 6999999999999999999998754
No 99
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=4.2e-30 Score=296.62 Aligned_cols=283 Identities=16% Similarity=0.224 Sum_probs=234.5
Q ss_pred cEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCe
Q 001190 766 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 845 (1128)
Q Consensus 766 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 845 (1128)
.++.++|++++ +++++.|++|++||... |.+.. .+....|...|++++|+|||++
T Consensus 107 y~~~l~wS~~n--~lAvgld~tV~lWd~~t----------------------g~~~~-~~~~~~~~~~V~sv~fspdg~~ 161 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQ-LLQMEQPGEYISSVAWIKEGNY 161 (420)
T ss_dssp TCBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEE-EEECCSTTCCEEEEEECTTSSE
T ss_pred cceeEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEE-EEEecCCCCcEEEEEECCCCCE
Confidence 45678999765 44555699999997643 32221 1111137888999999999999
Q ss_pred EEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-eeeecccccccCeeEEEE
Q 001190 846 VMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQKRITGLAF 923 (1128)
Q Consensus 846 la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~ 923 (1128)
|++|+ ||.|++||+.+++.+..+.+|...+.+++++ +.+|++|+.|+.+++||.... ..+..+.+|...+..+.+
T Consensus 162 lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~ 238 (420)
T 4gga_A 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 238 (420)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeee
Confidence 99998 8999999999999999999999999998884 579999999999999998864 556788999999999999
Q ss_pred cCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEE-EEE---ecCeEEEEecCCcccccc
Q 001190 924 STSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM-LVV---HETQLAIYDASKMERIRQ 999 (1128)
Q Consensus 924 s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l-~~~---~d~~i~v~d~~~~~~~~~ 999 (1128)
+|+++++++++.|+.+++|+..+++....... ....+. ..+..++|+|++..+ +++ .|+.|++||+.++..+..
T Consensus 239 ~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~-~~~~~~-~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 239 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCCSSCSCCSE-EECCCS-SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred cCCCCeeeeeeccccceEEeeccccccceeee-eecccC-CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 99999999999999999999998764332221 122232 789999999976544 443 389999999999998887
Q ss_pred cccCCCCCCCeEEEEEeeCCCEEEEEe--cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEE
Q 001190 1000 WTPQDALSAPISCAVYSCNSQLVFATF--CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1077 (1128)
Q Consensus 1000 ~~~~~~h~~~v~~l~~s~dg~~l~t~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1077 (1128)
+.. ...+.++.|+++++.+++++ .||.|+|||+.+++.+..+. +|...|++++|+| |+.+|
T Consensus 317 ~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~------------gH~~~V~~l~~sp-dg~~l 379 (420)
T 4gga_A 317 VDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK------------GHTSRVLSLTMSP-DGATV 379 (420)
T ss_dssp EEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC------------CCSSCEEEEEECT-TSSCE
T ss_pred ecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc------------CCCCCEEEEEEcC-CCCEE
Confidence 765 56899999999999988765 79999999999999999988 6777889999999 69999
Q ss_pred EEEECCCcEEEEcCCCCC
Q 001190 1078 AIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1078 ~s~~~dg~i~iWd~~~~~ 1095 (1128)
++|+.||+|+|||+.+.+
T Consensus 380 ~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 380 ASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEETTTEEEEECCSCSS
T ss_pred EEEecCCeEEEEECCCCC
Confidence 999999999999998755
No 100
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=2e-30 Score=294.17 Aligned_cols=287 Identities=17% Similarity=0.225 Sum_probs=237.8
Q ss_pred ceEEee-cCCCcEEEEEEeCC---CCcEEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccCCCcceE
Q 001190 336 TVAVSL-HQGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1128)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspd---g~~lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 410 (1128)
.....+ +|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+. ..+.+|.+.|.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h~~~v~ 90 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMHTGPVL 90 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEE------------------EEEEECSSCEE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeE------------------EEeccccCCEE
Confidence 344444 49999999999999 56 789999999999999987 44331 23778999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEE--ecCCCeEEEEEecCCCeEEEEe-cCCCeE
Q 001190 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF--AYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1128)
Q Consensus 411 ~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~f--s~d~~~~~l~s~s~d~~i~vWd-~~g~~~ 487 (1128)
+++|+|++++|++|+.||.|++||+.+++.+. +.+|...|++++| ++++. +|++++.|+.|++|| .+++.+
T Consensus 91 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~ 164 (368)
T 3mmy_A 91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPM 164 (368)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCS
T ss_pred EEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEE
Confidence 99999999999999999999999999987554 5679999999999 88888 899999999999999 888888
Q ss_pred EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec--CCCCeEEEEEEcCCCCe----EEEeeeccC
Q 001190 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSR----LFSCGTSKD 561 (1128)
Q Consensus 488 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~~~~s~~g~~----l~~~~~~~~ 561 (1128)
..+..|. .+.++.+.. ..+++++.++.+++|+++......... .....+.++.+.+++.. +++++
T Consensus 165 ~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 235 (368)
T 3mmy_A 165 MVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS---- 235 (368)
T ss_dssp EEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE----
T ss_pred EEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec----
Confidence 8888765 566666643 478899999999999998766554332 23446677777666654 77777
Q ss_pred CCceEEEEeCCCC---ceeeEeccccCC-----------ceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCC
Q 001190 562 GDSFLVEWNESEG---TIKRTYAGFRKK-----------SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1128)
Q Consensus 562 ~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~ 627 (1128)
.++.|++||+... ..+..+.+|... .+.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 236 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 314 (368)
T 3mmy_A 236 IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL- 314 (368)
T ss_dssp TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-
T ss_pred CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-
Confidence 4999999999987 567777777653 5899999999999999999999999999999998888754
Q ss_pred CCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 628 ~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
...|.+++|+|++++|++++.|+..+.|++
T Consensus 315 -~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 315 -DQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp -SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred -CCCceEEEECCCCCeEEEEecccccccccc
Confidence 448999999999999999999886555443
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=279.51 Aligned_cols=282 Identities=16% Similarity=0.240 Sum_probs=231.8
Q ss_pred EEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeE
Q 001190 767 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1128)
Q Consensus 767 i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1128)
.+.++||+++ +++++.|++|++||+.. |+++. .+....|...|.+++|+|++++|
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~t----------------------g~~~~-~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQ-LLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEE-EEECCSTTCCEEEEEECTTSSEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEE-EEEecCCCCeEEEEEECCCCCEE
Confidence 4678999887 44556799999997643 33221 11122388899999999999999
Q ss_pred EEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-eeeecccccccCeeEEEEc
Q 001190 847 MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQKRITGLAFS 924 (1128)
Q Consensus 847 a~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s 924 (1128)
++|+ ||+|++||+.+++++..+.+|...+.++.+ ++.++++|+.++.+++|+...+ ..+..+.+|...+..+.++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 9998 899999999999999999999998887766 4579999999999999998865 5567788999999999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE-E---ecCeEEEEecCCccccccc
Q 001190 925 TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V---HETQLAIYDASKMERIRQW 1000 (1128)
Q Consensus 925 ~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~---~d~~i~v~d~~~~~~~~~~ 1000 (1128)
+++++|++++.|+.|++||+.+++.......... .+ ...+..++++|++..++. + .++.|++||..........
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QH-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC-CC-CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeec-cc-CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence 9999999999999999999998775443322221 22 267889999998765543 2 3789999999988776654
Q ss_pred ccCCCCCCCeEEEEEeeCCCEEEEEe--cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 1001 TPQDALSAPISCAVYSCNSQLVFATF--CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 1001 ~~~~~h~~~v~~l~~s~dg~~l~t~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
.. ...+..+.|+++++.+++++ .|+.|+|||+.+++.+..+. +|...|.+++|+| ++.+|+
T Consensus 238 ~~----~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~------------gH~~~V~~l~~sp-dg~~l~ 300 (318)
T 4ggc_A 238 DA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK------------GHTSRVLSLTMSP-DGATVA 300 (318)
T ss_dssp EC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC------------CCSSCEEEEEECT-TSSCEE
T ss_pred cc----eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc------------CCCCCEEEEEEcC-CCCEEE
Confidence 43 67899999999999888755 79999999999999999988 5677889999999 699999
Q ss_pred EEECCCcEEEEcCCCCC
Q 001190 1079 IGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1079 s~~~dg~i~iWd~~~~~ 1095 (1128)
+|+.||+|+|||+.+.+
T Consensus 301 S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 301 SAAADETLRLWRCFELD 317 (318)
T ss_dssp EEETTTEEEEECCSCCC
T ss_pred EEecCCeEEEEECCCCC
Confidence 99999999999998765
No 102
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.4e-30 Score=289.96 Aligned_cols=297 Identities=9% Similarity=0.110 Sum_probs=218.6
Q ss_pred eecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc--C
Q 001190 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--D 417 (1128)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 417 (1128)
..+|.+.|++++|+|+|+ +||+|+.||.|+|||+.++..... ....+.+|...|.+++|+| |
T Consensus 7 ~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp ECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGG
T ss_pred CcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCC
Confidence 346999999999999999 789999999999999987653211 1124778999999999999 6
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcc------eeceeecccccceeEEEEecC--CCeEEEEEecCCCeEEEEe-cCCCeEE
Q 001190 418 GNYVGVAFTKHLIQLYSYAGSNDL------RQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1128)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~------~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~vWd-~~g~~~~ 488 (1128)
+++|++|+.||.|++||+.+++.. .....+.+|.+.|.+++|+|+ +. +|++++.|+.|++|| .+++.+.
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence 999999999999999999987421 233467799999999999999 88 899999999999999 7776554
Q ss_pred Eec-------------CCCCCeEEEeccCC-CCccEEEEEeccCcEEEEecCCCCc--eeeecCCCCeEEEEEEcCCC--
Q 001190 489 NFE-------------GHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADG-- 550 (1128)
Q Consensus 489 ~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~i~~~~~s~~g-- 550 (1128)
.+. +|...+.+++|++. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 332 68889999999874 1257999999999998888776655 44566788899999999998
Q ss_pred --CeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEE----ECCCcEEEEECCCCeeeEEEe
Q 001190 551 --SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV----GEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 551 --~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
++|++++ .|+.|++||+.++........... ........+....+..+ .....+.+|+....+.+..+.
T Consensus 229 ~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 229 WYQLIATGC----KDGRIRIFKITEKLSPLASEESLT-NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD 303 (351)
T ss_dssp SSEEEEEEE----TTSCEEEEEEEECC----------------------------------------CCSEEEEEEEEEC
T ss_pred cceEEEEEc----CCCeEEEEeCCCCcCccccCCccc-ceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence 7888887 489999999987765444333222 22233333333333333 344556667666667777776
Q ss_pred cCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 625 ~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.+ ...|.+++|+|++++|++++.||.|++|++.++
T Consensus 304 ~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 304 DH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp TT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 44 458999999999999999999999999999876
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=294.71 Aligned_cols=309 Identities=13% Similarity=0.137 Sum_probs=227.5
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCC-----------
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLE----------- 831 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 831 (1128)
+.+.|.+++|+|+|.+|++++.||.|++|++............ .......+.+ |.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~------------~~~~~~~~~~--h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG------------EYNVYSTFQS--HEPEFDYLKSLEI 92 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCC------------CEEEEEEEEC--CCCEEEGGGTEEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccc------------ceeEeccccc--ccccccccccccc
Confidence 6789999999999999999999999999998754311000000 0000111222 55
Q ss_pred -CCeeEEEeccCC--CeEEEEe-CCeEEEEECCCceEE---------------------------------------EE-
Q 001190 832 -EAVPCIALSKND--SYVMSAT-GGKISLFNMMTFKVM---------------------------------------TT- 867 (1128)
Q Consensus 832 -~~v~~~~~s~dg--~~la~~~-dg~i~vwd~~~~~~~---------------------------------------~~- 867 (1128)
..|.+++|+|++ .+|++++ |+.|++||+.+++.. ..
T Consensus 93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 889999999998 7888887 899999999875442 12
Q ss_pred eeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc-ceeee-------cccccccCeeEEEEcCCC-CEEEEEcCCCc
Q 001190 868 FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKS-------KLKGHQKRITGLAFSTSL-NILVSSGADAQ 938 (1128)
Q Consensus 868 ~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~-------~l~~h~~~V~~l~~s~d~-~~l~s~~~Dg~ 938 (1128)
..+|...|.+++|+| ++++|++| .||.|++||+.+ ++.+. .+.+|...|.+++|+|++ .+|++++.||.
T Consensus 173 ~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 173 ANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT 250 (447)
T ss_dssp CSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred ccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe
Confidence 357999999999999 89999998 799999999994 44444 477899999999999998 99999999999
Q ss_pred EEEEECCCCcccceeEEeecCCCCC-----------CCccEEEEcCCCCEEEEEecCeEEEEecCC-cccccccccCCCC
Q 001190 939 LCVWSIDTWEKRKSVTIHIPAGKTP-----------TGDTRVQFNADQVRMLVVHETQLAIYDASK-MERIRQWTPQDAL 1006 (1128)
Q Consensus 939 i~iwd~~~~~~~~~~~~~~~~~~~~-----------~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~-~~~~~~~~~~~~h 1006 (1128)
|++||+.+++..... ......+.. ..+.+++|+|+|++|++++++.|++||+.+ ++.+..+..+...
T Consensus 251 i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 251 IRLCDMRASALCDRH-SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp EEEEETTTCSSSCTT-CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGG
T ss_pred EEEEECcCCccccce-eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccc
Confidence 999999987752110 111122221 279999999999999998889999999997 7777777665311
Q ss_pred CC------------CeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCc--------------------
Q 001190 1007 SA------------PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS-------------------- 1054 (1128)
Q Consensus 1007 ~~------------~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------------- 1054 (1128)
.. .+..++|+|||++|++|+.||.|+|||+.+++.+............
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEIS 409 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccc
Confidence 11 1345999999999999999999999999999886433211100000
Q ss_pred ccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEc
Q 001190 1055 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1090 (1128)
Q Consensus 1055 ~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd 1090 (1128)
.........+..++|+| ++++|++++.++ +++|.
T Consensus 410 ~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 410 VDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp GGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEE
T ss_pred ccccccCCceeEEEECC-CCCEEEEEecce-eeeec
Confidence 00012233568899999 689999988876 56664
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.5e-30 Score=290.86 Aligned_cols=251 Identities=15% Similarity=0.203 Sum_probs=209.5
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC--CC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--GN 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~ 419 (1128)
+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+.... ...+.+|.+.|++++|+|+ ++
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~h~~~v~~~~~~~~~~~~ 70 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFGT 70 (379)
T ss_dssp ECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCGGGCS
T ss_pred CCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCccee-----------------eeEecCCCCcEEEEEeCCCCCCC
Confidence 5999999999999999 78999999999999998432211 1237789999999999987 99
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEEEEe-cCC--CeEEEecCCC
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGHE 494 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~vWd-~~g--~~~~~~~~h~ 494 (1128)
+|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|+.|++|| ..+ .....+.+|.
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred EEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 9999999999999999998622 22257789999999999999 88 899999999999999 555 3456778899
Q ss_pred CCeEEEeccCCC-----------CccEEEEEeccCcEEEEecCCCCce----eeecCCCCeEEEEEEcCC---CCeEEEe
Q 001190 495 APVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSAD---GSRLFSC 556 (1128)
Q Consensus 495 ~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~i~~~~~s~~---g~~l~~~ 556 (1128)
..|.+++|++.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+ +++++++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 999999998742 5689999999999999999876543 456678889999999999 8899988
Q ss_pred eeccCCCceEEEEeCCCCce---eeEe--ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 557 GTSKDGDSFLVEWNESEGTI---KRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
+ .++.|++||+.++.. ...+ ..+.. .+.+++|+|++++|++++.||.|++|++....
T Consensus 228 ~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 228 S----QDRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp E----TTSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred e----CCCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 7 489999999998742 1222 22443 79999999999999999999999999997543
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=4.1e-29 Score=280.25 Aligned_cols=249 Identities=10% Similarity=-0.038 Sum_probs=209.8
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..+|.+.|++++|+|++++|++++.|+.|++||+.+++.......+.+|...|++++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 5679999999999999999999999999999999988732222345689999999999999882 378899999999999
Q ss_pred c-CCCeEEEecC--CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC---------CCceeeecCCCCeEEEEEEcCC
Q 001190 482 L-SGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---------MGSRVDYDAPGHWCTTMLYSAD 549 (1128)
Q Consensus 482 ~-~g~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~---------~~~~~~~~~~~~~i~~~~~s~~ 549 (1128)
. .......+.+ |...|.+++|++ +.++++++.|+.|++||++. ......+. +...+.+++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred eccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 7 8878889999 999999999987 57999999999999999987 55555555 7778999999998
Q ss_pred CCeEEEeeeccCCCceEEEEeCCC-Cce-eeEeccccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCC------eee
Q 001190 550 GSRLFSCGTSKDGDSFLVEWNESE-GTI-KRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNV------NIL 620 (1128)
Q Consensus 550 g~~l~~~~~~~~~~~~i~~wd~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~------~~~ 620 (1128)
+ +++++ .++.|++||+.+ +.. ...........+.+++|+| +++++++++.||.|++|++... +..
T Consensus 162 ~--l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 162 R--LIVGM----NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp E--EEEEE----STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred c--EEEEe----CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 8 66666 488999999998 553 2223333334799999999 9999999999999999999887 667
Q ss_pred EEEecCCC-------CCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 621 TSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 621 ~~~~~~~~-------~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
..+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 77765532 347999999999999999999999999998765
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-29 Score=286.62 Aligned_cols=253 Identities=19% Similarity=0.299 Sum_probs=216.4
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~ 478 (1128)
++.+|.+.|++++|+|+|++||+|+.||.|+|||+..+.. .....+.+|.+.|++++|+++ +. +|++|+.|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 4889999999999999999999999999999999984322 223357899999999999987 77 899999999999
Q ss_pred EEe-cCCC--eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC--ceeeecCCCCeEEEEEEcC-----
Q 001190 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (1128)
Q Consensus 479 vWd-~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~~~~s~----- 548 (1128)
+|| .+++ .+..+.+|...|.+++|++..++.+|++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 999 7776 77888899999999999886437899999999999999998874 3446677888999999999
Q ss_pred --------CCCeEEEeeeccCCCceEEEEeCCCCc----eeeEeccccCCceeEEEEeCC---CCEEEEEECCCcEEEEE
Q 001190 549 --------DGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (1128)
Q Consensus 549 --------~g~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iwd 613 (1128)
++.++++++. ++.|++||++++. ....+.+|.. .+.+++|+|+ +.+|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6899999884 8899999998764 4466777776 8999999999 89999999999999999
Q ss_pred CCCCe---eeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 614 MDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 614 ~~~~~---~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+.++. .........+...|.+++|+|++++|++++.||.|++|++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 98874 2333333345568999999999999999999999999999764
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=7.1e-29 Score=287.96 Aligned_cols=233 Identities=17% Similarity=0.293 Sum_probs=207.7
Q ss_pred cCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd- 481 (1128)
.+|...|.|++| ++++|++|+.||.|++||+.+++.+. .+.+|.+.|.+++| +++ +|++|+.||+|++||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 457778998887 89999999999999999999988765 57899999999999 677 899999999999999
Q ss_pred cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCce---eeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 482 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
.+++.+..+.+|...|.+++|+ +..+++|+.||.|++||+...... ..+..|...|.++++ +++++++++
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~- 273 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS- 273 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE-
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe-
Confidence 8999999999999999999984 258999999999999999887665 567788889999998 788999988
Q ss_pred ccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
.++.|++||+.+++.+..+.+|.. .+.++.++ ++++++|+.||.|++||+.+++.+..+..+ ...|.+++|
T Consensus 274 ---~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~- 344 (435)
T 1p22_A 274 ---GDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRF- 344 (435)
T ss_dssp ---TTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEC-
T ss_pred ---CCCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEe-
Confidence 499999999999999999999887 78888884 689999999999999999999999888754 447899988
Q ss_pred CCCCEEEEEEcCCcEEEEEcccC
Q 001190 639 KEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
++.+|++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998765
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-28 Score=285.13 Aligned_cols=299 Identities=12% Similarity=0.072 Sum_probs=233.0
Q ss_pred CcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCc---eeccccccccccccc----------------------------
Q 001190 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRD---RLVSKPFKIWDMAAC---------------------------- 393 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 393 (1128)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 4789999999999 65655 57899999999998 4322 211000
Q ss_pred ------------CccccceeccCCCcceEEEEEccCCCEE-EEEeCCCeEEEEEcc--CCCcceeceeecccccceeEEE
Q 001190 394 ------------SLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLA 458 (1128)
Q Consensus 394 ------------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~v~~l~ 458 (1128)
..........+|.+.|.+++|+|+|++| |+|+.||.|+|||+. +++.+..+. ...|...|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000111234677789999999999996 899999999999999 777766421 126778999999
Q ss_pred EecCCCeEEEEEecCCCeEEEEe-cCCCeEE----EecCCCCCeEEEeccCC-CCccEEEEEeccCcEEEEecCCCCcee
Q 001190 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF----NFEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (1128)
Q Consensus 459 fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~~~~ 532 (1128)
|+|+++ +|++|+.|+.|++|+ .++.... .+.+|...|++++|+++ ..+.+|++++.|+.|++||+.++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 899999999999999 6666443 78889999999999874 126899999999999999999888776
Q ss_pred e-ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecccc------------------------CCc
Q 001190 533 D-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------------------------KKS 587 (1128)
Q Consensus 533 ~-~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------~~~ 587 (1128)
. +..|...|.+++|+ ++++|++++ .|+.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~----~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAG----GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEE----SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEe----CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788899999999 999999998 48999999999999888876431 235
Q ss_pred eeEEEEeCCCCEEEEEE-CCCcEEEEEC--CCC---eeeEEEecCCCCCCcceEEEcCCCCEEEEEEc------CCcEEE
Q 001190 588 NGVVQFDTTQNHFLAVG-EDSQIKFWDM--DNV---NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA------DNGFKI 655 (1128)
Q Consensus 588 v~~~~~~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~------dg~i~i 655 (1128)
+..++|+|+++++++++ .|+.|++|++ .++ +.+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 78899999999999999 8999999999 555 666666654 47899999996544443332 455888
Q ss_pred EEcccC
Q 001190 656 LANAIG 661 (1128)
Q Consensus 656 w~~~~~ 661 (1128)
|.+...
T Consensus 387 ~~~~~~ 392 (450)
T 2vdu_B 387 IEYNLN 392 (450)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 887643
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.1e-28 Score=275.31 Aligned_cols=263 Identities=13% Similarity=0.117 Sum_probs=208.9
Q ss_pred CCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCc----eEEEEeeCCCCCeeEEEEcCC-CCCEEEEEeCCCcEEEEecc
Q 001190 830 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF----KVMTTFMSPPPASTFLAFHPQ-DNNIIAIGTEDSTIHIYNVR 903 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~----~~~~~~~~~~~~v~~l~~s~~-d~~~lasg~~dg~v~iwd~~ 903 (1128)
|...|++++|+|++++|++++ ||.|++||+.++ +....+.+|...|++++|+|. ++++|++|+.||.|++||+.
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 999999999999999999998 899999999876 567788899999999999984 48999999999999999998
Q ss_pred cc---------eeeecccccccCeeEEEEcCC--CCEEEEEcCCCcEEEEECCCCcccceeEEee-------cCCCCCCC
Q 001190 904 VD---------EVKSKLKGHQKRITGLAFSTS--LNILVSSGADAQLCVWSIDTWEKRKSVTIHI-------PAGKTPTG 965 (1128)
Q Consensus 904 ~~---------~~~~~l~~h~~~V~~l~~s~d--~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~ 965 (1128)
++ +.+..+.+|.+.|.+++|+|+ +.+|++++.||.|++||+.+++......... ........
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS 169 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccc
Confidence 87 567888899999999999999 9999999999999999999887665543211 11122378
Q ss_pred ccEEEEcCC---CCEEEEEe-cCeEEEEecCCccc--ccccccCCCCCCCeEEEEEeeCC----CEEEEEecCCcEEEEe
Q 001190 966 DTRVQFNAD---QVRMLVVH-ETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNS----QLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 966 v~~v~~s~d---~~~l~~~~-d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~l~~s~dg----~~l~t~~~dg~i~vwd 1035 (1128)
+.+++|+|+ +.+++++. ++.+.+|+...+.. +..+. .|...|.+++|+|++ ++|++++.||.|++||
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd 246 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP---GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK 246 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC---CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred eeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC---CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence 899999997 88888876 67776666665554 33333 458999999999998 8999999999999999
Q ss_pred cCCCceEEEeCCCCCC----------------------------------CCcccCCCCccceEEEEEecCCCCEEEEEE
Q 001190 1036 ADTLRLRCYIAPSTYL----------------------------------SPSVLNGSQTVYPLVVAAHPLEPNQFAIGL 1081 (1128)
Q Consensus 1036 ~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~ 1081 (1128)
+.++............ .....-..|...+.+++|+| ++.+|++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~ 325 (351)
T 3f3f_A 247 ITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAG 325 (351)
T ss_dssp EEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEE
T ss_pred CCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEec
Confidence 9876321111000000 00000024666789999999 689999999
Q ss_pred CCCcEEEEcCCCCCC
Q 001190 1082 TDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1082 ~dg~i~iWd~~~~~~ 1096 (1128)
.||.|++|++.+++.
T Consensus 326 ~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 326 DDGKVRLWKATYSNE 340 (351)
T ss_dssp TTSCEEEEEECTTSC
T ss_pred CCCcEEEEecCcCcc
Confidence 999999999998763
No 110
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.2e-28 Score=277.47 Aligned_cols=303 Identities=13% Similarity=0.122 Sum_probs=230.6
Q ss_pred Ee-cCCCeEEEecCCCCCeEEEeccCCC-CccEEEEEeccCcEEEEecCC-CCce-eeecCCCCeEEEEEEcCCCCeEEE
Q 001190 480 WE-LSGRKLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDT-MGSR-VDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~-~~~~-~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
|+ ...+.+..+.+|.+.|++++|+++. +|.+|++++.||.|++||+++ .... ..+..|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 45 5667788899999999999998742 158999999999999999987 3333 567788999999999999999999
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEE--eCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcc
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF--DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1128)
++ .++.|++||+.+++.+. +..|.. .+.+++| ++++.+|++++.||.|++||+.+++.+..+..+. .+.
T Consensus 104 ~~----~dg~v~iwd~~~~~~~~-~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~ 174 (368)
T 3mmy_A 104 AS----CDKTAKMWDLSSNQAIQ-IAQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCY 174 (368)
T ss_dssp EE----TTSEEEEEETTTTEEEE-EEECSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEE
T ss_pred Ec----CCCcEEEEEcCCCCcee-eccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---Cce
Confidence 88 48999999999998776 445555 8999999 8999999999999999999999999888887654 355
Q ss_pred eEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcc
Q 001190 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1128)
Q Consensus 634 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~ 713 (1128)
++.+. ...+++++.++.+.+|++............
T Consensus 175 ~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------------------------------- 209 (368)
T 3mmy_A 175 CADVI--YPMAVVATAERGLIVYQLENQPSEFRRIES------------------------------------------- 209 (368)
T ss_dssp EEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCC-------------------------------------------
T ss_pred EEEec--CCeeEEEeCCCcEEEEEeccccchhhhccc-------------------------------------------
Confidence 55554 458889999999999998654221111000
Q ss_pred cccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeec
Q 001190 714 IINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 793 (1128)
Q Consensus 714 ~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~ 793 (1128)
.+...+..+.+.++...
T Consensus 210 ------------------------------------------------~~~~~~~~~~~~~~~~~--------------- 226 (368)
T 3mmy_A 210 ------------------------------------------------PLKHQHRCVAIFKDKQN--------------- 226 (368)
T ss_dssp ------------------------------------------------SCSSCEEEEEEEECTTS---------------
T ss_pred ------------------------------------------------cccCCCceEEEcccCCC---------------
Confidence 01111222222222211
Q ss_pred cccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCc---eEEEEee
Q 001190 794 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTF---KVMTTFM 869 (1128)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~---~~~~~~~ 869 (1128)
++ ..+++++ ||.|++||+... +....+.
T Consensus 227 ----------------------------------------------~~--~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 227 ----------------------------------------------KP--TGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp ----------------------------------------------CE--EEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred ----------------------------------------------CC--CeEEEecCCCcEEEEecCCCCccccceeee
Confidence 00 0144444 566666666554 3444555
Q ss_pred CCCC------------CeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCC
Q 001190 870 SPPP------------ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 937 (1128)
Q Consensus 870 ~~~~------------~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg 937 (1128)
+|.. .|++++|+| ++++|++|+.||.|++||+.+++++..+.+|..+|.+++|+|+|++|++++.|+
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred eeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 5544 799999999 899999999999999999999999999999999999999999999999999998
Q ss_pred cEEEEECCCCc
Q 001190 938 QLCVWSIDTWE 948 (1128)
Q Consensus 938 ~i~iwd~~~~~ 948 (1128)
..+.|++...+
T Consensus 338 ~~~~~~~~~~~ 348 (368)
T 3mmy_A 338 WSKGHEFYNPQ 348 (368)
T ss_dssp STTCGGGCCTT
T ss_pred ccccccccCCC
Confidence 76666655443
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1e-28 Score=283.52 Aligned_cols=276 Identities=14% Similarity=0.153 Sum_probs=226.5
Q ss_pred cceEEEEEccCCCEEE-EEeCCCeEEEEEccCCCc-ceeceeecccccceeEEEEec-CCCeEEEEEecCCCeEEEEe-c
Q 001190 407 ISVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-L 482 (1128)
Q Consensus 407 ~~V~~l~~spdg~~la-s~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~fs~-d~~~~~l~s~s~d~~i~vWd-~ 482 (1128)
.....++++|+...++ +++.||.|+||++..... ......+.+|.+.|++++|+| ++. +|++|+.||+|++|| .
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876555 578899999999965432 233335779999999999999 888 899999999999999 6
Q ss_pred CC-------CeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee--cCCCCeEEEEEEcCCCCeE
Q 001190 483 SG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 483 ~g-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l 553 (1128)
++ +++..+.+|...|.+++|+++. ..+|++++.||.|++||+++++....+ ..|...|.+++|+|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 66 6678899999999999998742 269999999999999999998888888 7788999999999999999
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEe-ccccCCceeEEEEeCCCCEEEEE---ECCCcEEEEECCCCee-eEEEecCCC
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTTQNHFLAV---GEDSQIKFWDMDNVNI-LTSTDAEGG 628 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~~~~ 628 (1128)
++++ .++.|++||+++++.+..+ .+|....+..+.|+|++.+|++| +.|+.|++||+.+++. +..... .+
T Consensus 192 ~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~ 266 (402)
T 2aq5_A 192 CTSC----RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT 266 (402)
T ss_dssp EEEE----TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC
T ss_pred EEEe----cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC
Confidence 9998 4899999999999999998 77777558899999999999998 7999999999988765 333332 33
Q ss_pred CCCcceEEEcCCCCEEEEEE-cCCcEEEEEcccCccccccccCCccccccCcceeeeeeccccccc
Q 001190 629 LPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1128)
Q Consensus 629 ~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 693 (1128)
...+.+++|+|++++|++++ .||.|++|++.++......+..+. +..++.+++|+|++..++
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCG
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEecccccce
Confidence 44789999999999997554 699999999998754343333322 346789999999988763
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3e-27 Score=270.56 Aligned_cols=268 Identities=10% Similarity=0.055 Sum_probs=219.8
Q ss_pred CcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE-EEEeCCCeEEEEEc
Q 001190 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSY 435 (1128)
Q Consensus 357 ~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~vwd~ 435 (1128)
++++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35789999999999999999877642 4444 458999999999987 56678999999999
Q ss_pred cCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEE-EE
Q 001190 436 AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FS 513 (1128)
Q Consensus 436 ~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s 513 (1128)
.+++.+.. +..|. .+.+++|+|+++. ++++++.|+.|++|| .+++.+..+..+ ..+.+++|++ +++.+ ++
T Consensus 62 ~~~~~~~~---~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIAT---VPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVT 133 (391)
T ss_dssp TTTEEEEE---EECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEE
T ss_pred CCCeEEEE---EECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEE
Confidence 99887653 43344 8999999999994 346777889999999 778877777754 4689999977 55666 78
Q ss_pred EeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEE
Q 001190 514 TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF 593 (1128)
Q Consensus 514 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~ 593 (1128)
++.|+.|++||+.+++....+..+ ..+.+++|+|+|+.+++++. .++.|++||+.+++.+..+..+. .+..++|
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~ 207 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAV 207 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEE
Confidence 888999999999888777666654 45799999999998865443 47899999999998887776533 6788999
Q ss_pred eCCCCEEEEEE---CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEE-EEEEcCCcEEEEEcccC
Q 001190 594 DTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIG 661 (1128)
Q Consensus 594 ~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~ 661 (1128)
+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.++
T Consensus 208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 99999999988 68999999999999888887643 47899999999987 56678999999999887
No 113
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-29 Score=310.34 Aligned_cols=251 Identities=15% Similarity=0.194 Sum_probs=210.6
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC--CC
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--GN 419 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~ 419 (1128)
+|.+.|++++|+|+|+ +|++|+.||.|+|||+.++... ....+.+|.+.|++++|+|+ ++
T Consensus 7 gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~-----------------~~~~l~~h~~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 7 AHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHK-----------------LIDTLTGHEGPVWRVDWAHPKFGT 68 (753)
T ss_dssp -CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEE-----------------EEEEECCCSSCEEEEEECCTTSCS
T ss_pred cCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCc-----------------cceeccCCcCceEEEEecCCCCCC
Confidence 5999999999999999 6799999999999999843321 11237889999999999998 99
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEEEEe-cCC--CeEEEecCCC
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGHE 494 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~vWd-~~g--~~~~~~~~h~ 494 (1128)
+|++|+.||.|++||+.+++.. ....+.+|...|++++|+|+ +. ++++|+.||.|++|| .++ .....+.+|.
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred EEEEEeCCCeEEEEECCCCccc-ccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence 9999999999999999997522 22357789999999999999 88 899999999999999 555 3456778899
Q ss_pred CCeEEEeccCCC-----------CccEEEEEeccCcEEEEecCCCCc----eeeecCCCCeEEEEEEcCC---CCeEEEe
Q 001190 495 APVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSAD---GSRLFSC 556 (1128)
Q Consensus 495 ~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~i~~~~~s~~---g~~l~~~ 556 (1128)
..|.+++|++.. ++.++++|+.||.|++||++.... ...+..|...|.+++|+|+ +.+++++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 999999998742 468999999999999999987743 3466778899999999999 8999998
Q ss_pred eeccCCCceEEEEeCCCCc-----eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 557 GTSKDGDSFLVEWNESEGT-----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
+. ++.|++||+.+++ .......|.. .+.+++|+|+++++++++.||.|++|++.++.
T Consensus 226 s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 226 SQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 84 8999999999874 2223333444 78999999999999999999999999998643
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.6e-27 Score=276.91 Aligned_cols=302 Identities=8% Similarity=0.063 Sum_probs=245.4
Q ss_pred cccCCC--CCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccC
Q 001190 327 TWSLDD--LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1128)
Q Consensus 327 ~~~~~~--~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1128)
+|.++. ........+.....+.+++|+|+++ ++++++.++.|++||+.+++.+.... ...+.+
T Consensus 103 l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~ 167 (433)
T 3bws_A 103 LIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKK 167 (433)
T ss_dssp EEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHT
T ss_pred EEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccc
Confidence 555554 2335566666667788999999665 88888899999999999988764211 112568
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~ 483 (1128)
|.+.|.+++|+|+|+++++++.|+.|++||+.+++.+. .+..|...+.+++|+|+++. ++++++.|+.|++|| .+
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKT 243 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTT
T ss_pred cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCC
Confidence 99999999999999999999999999999999987665 46689999999999999994 446777899999999 78
Q ss_pred CCeEEEecCCCCCeEEEeccCCCCccEEEEEe--------ccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 484 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
++.+..+..+. .+.+++|++ +++++++++ .||.|++||+.+++....+ .+...+.+++|+|+++.+++
T Consensus 244 ~~~~~~~~~~~-~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 244 KLEIRKTDKIG-LPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp TEEEEECCCCS-EEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEE
T ss_pred CcEEEEecCCC-CceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEE
Confidence 88877777654 589999976 667888887 4889999999877655444 33447889999999987766
Q ss_pred eeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEEC---------------CCcEEEEECCCCeee
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---------------DSQIKFWDMDNVNIL 620 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---------------dg~i~iwd~~~~~~~ 620 (1128)
.+. .++.|++||+.+++.+..+.. . ..+..++|+|+++++++++. ||.|++||..+++.+
T Consensus 320 ~~~---~~~~v~v~d~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 320 SDM---CCSKIEVYDLKEKKVQKSIPV-F-DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp EET---TTTEEEEEETTTTEEEEEEEC-S-SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred Eec---CCCEEEEEECCCCcEEEEecC-C-CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 543 589999999999998888763 2 36889999999999998876 579999999999998
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEEc-CCcEEEEEcc
Q 001190 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~ 659 (1128)
..+... ..+.+++|+|++++|++++. |+.|++|+++
T Consensus 395 ~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 395 EFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 888753 25899999999999998875 9999999975
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3.9e-28 Score=272.50 Aligned_cols=276 Identities=13% Similarity=0.162 Sum_probs=214.4
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
.|.+.|+|++|||||+ +||+|+.++ ++|||+.+++.... .+...+..++++++++++
T Consensus 17 ~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNYV 73 (355)
T ss_dssp --CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSEE
T ss_pred cCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCEE
Confidence 4899999999999999 788887664 78999987765431 122258889999999888
Q ss_pred E-EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC-CeEEEecCCCCCeE
Q 001190 422 G-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVY 498 (1128)
Q Consensus 422 a-s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g-~~~~~~~~h~~~v~ 498 (1128)
+ +++.|++|++||+.+++.+.. +. |...|.+++|+++. ++.+. |+.|++|| .++ +.+..+.. +..
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~~---~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVSR---IK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEEE---EE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred EEEECCccEEEEEECCCCcEEEE---EE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc---CCc
Confidence 5 567789999999999987663 43 67799999999774 33333 78999999 666 66666554 334
Q ss_pred EEeccCCCCccEEEE--EeccCcEEEEecCCCC----------------ceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 499 SICPHHKENIQFIFS--TAIDGKIKAWLYDTMG----------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s--~~~dg~i~~wd~~~~~----------------~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+++++ .+++. |+.||.|++||+.... ....+..|...|.+++|+|+|++|++++.
T Consensus 142 ~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-- 215 (355)
T 3vu4_A 142 VCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-- 215 (355)
T ss_dssp EEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred eEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--
Confidence 445544 35555 6899999999998755 25678889999999999999999999984
Q ss_pred CCCce-EEEEeCCCCceeeEec-c-ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEE--------------
Q 001190 561 DGDSF-LVEWNESEGTIKRTYA-G-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-------------- 623 (1128)
Q Consensus 561 ~~~~~-i~~wd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------------- 623 (1128)
|+. |++||+.+++.+..+. + |.. .|.+++|+|++++|++++.|+.|++||+..+......
T Consensus 216 --d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (355)
T 3vu4_A 216 --DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE 292 (355)
T ss_dssp --TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred --CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence 897 9999999999999998 5 554 8999999999999999999999999999765321110
Q ss_pred ------ec-CCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 624 ------DA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 624 ------~~-~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.. .........++|+++++.+++++.||.+++|++..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp SCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 00 011123467899999999999999999999998765
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3e-27 Score=265.32 Aligned_cols=238 Identities=10% Similarity=0.161 Sum_probs=188.8
Q ss_pred ccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe
Q 001190 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd 481 (1128)
..+|...|.+++|||||++||+|+.++ ++|||+++++.... .+...+..++|.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-----QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-----EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-----eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 577999999999999999999998775 78999987654431 23335888999998884 446788899999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC-CceeeecCCCCeEEEEEEcCCCCeEEEe-ee
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSC-GT 558 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~ 558 (1128)
.+++++..+. |...|.++++++ + .++++ .|+.|++||+... +....+.. ....+++++ .+++++ +.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~ 156 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEF 156 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESS
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCC
Confidence 8899988887 667899999865 3 34443 5889999999887 44444433 455566777 566664 32
Q ss_pred ccCCCceEEEEeCCCCc----------------eeeEeccccCCceeEEEEeCCCCEEEEEECCCc-EEEEECCCCeeeE
Q 001190 559 SKDGDSFLVEWNESEGT----------------IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILT 621 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~ 621 (1128)
.++.|++||+.+++ .+..+.+|.. .|.+++|+|++++|++|+.||+ |++||+.+++.+.
T Consensus 157 ---~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 157 ---NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp ---CTTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred ---cCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 58899999999876 2678888887 8999999999999999999998 9999999999998
Q ss_pred EEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 622 ~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.+....+...|.+++|+|++++|++++.|++|++||+..+
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 8873224458999999999999999999999999999765
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=5.1e-28 Score=279.85 Aligned_cols=267 Identities=13% Similarity=0.245 Sum_probs=215.7
Q ss_pred cceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 335 ~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
......+.|.+.|++++|+|++..+||+|+.||.|+|||+.+...... ..........+.+|...|.+++|
T Consensus 119 ~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~ 189 (430)
T 2xyi_A 119 IEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSW 189 (430)
T ss_dssp EEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEE
T ss_pred eEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEe
Confidence 345666789999999999998555899999999999999976311100 00000122347889999999999
Q ss_pred ccCCC-EEEEEeCCCeEEEEEccCCCc----ceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCC---C
Q 001190 415 SPDGN-YVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---R 485 (1128)
Q Consensus 415 spdg~-~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g---~ 485 (1128)
+|++. +|++|+.||.|++||+.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++|| .++ +
T Consensus 190 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~ 268 (430)
T 2xyi_A 190 NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSK 268 (430)
T ss_dssp CTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSS
T ss_pred CCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCc
Confidence 99999 999999999999999988433 1223356789999999999994433 899999999999999 555 5
Q ss_pred eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC-CCceeeecCCCCeEEEEEEcCCCCe-EEEeeeccCCC
Q 001190 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGD 563 (1128)
Q Consensus 486 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~~~~~~ 563 (1128)
.+..+..|...|++++|++.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++. +++++ .+
T Consensus 269 ~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~----~d 343 (430)
T 2xyi_A 269 PSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG----TD 343 (430)
T ss_dssp CSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE----TT
T ss_pred ceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe----CC
Confidence 778888999999999998743 24799999999999999988 4456678889999999999999975 66665 48
Q ss_pred ceEEEEeCCC--------------CceeeEeccccCCceeEEEEeCCCC-EEEEEECCCcEEEEECCCC
Q 001190 564 SFLVEWNESE--------------GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 564 ~~i~~wd~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~ 617 (1128)
+.|++||+.. .+.+..+.+|.. .+..++|+|++. .+++++.||.|++|++...
T Consensus 344 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999999987 356677777776 799999999998 8999999999999998654
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=6.8e-27 Score=271.70 Aligned_cols=371 Identities=13% Similarity=0.155 Sum_probs=271.6
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEE---EccCCC
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA---WSPDGN 419 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~---~spdg~ 419 (1128)
....|..+.|+|.....+..+......+++... ....+..++ |+|++.
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~g~~~~~~p~~~~~~~ 76 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMD-----------------------------KNIALVEMAIPVYKDEKE 76 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEEE-----------------------------TTEEEEEEEEECCCTTCC
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeecc-----------------------------cCCccEEEEEeeccCCCc
Confidence 445788899999755344443222223333221 233556666 677666
Q ss_pred EEEEE--------------eCCCeEEEEEc--cCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c
Q 001190 420 YVGVA--------------FTKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1128)
Q Consensus 420 ~las~--------------~~d~~i~vwd~--~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~ 482 (1128)
.++.. +.++.+.||.+ .++. ......+..+ ..+.+++|+|++. ++++++.|+.|++|| .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~~~~~~~~~i~~~d~~ 152 (433)
T 3bws_A 77 IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LAIPLLEDEGMDVLDIN 152 (433)
T ss_dssp EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EEEEBTTSSSEEEEETT
T ss_pred EEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EEEEeCCCCeEEEEECC
Confidence 55543 23332345544 3342 2222234344 4567999999666 788899999999999 7
Q ss_pred CCCeEE-----EecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 483 SGRKLF-----NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 483 ~g~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
+++.+. .+.+|.+.|.+++|++ ++.++++++.|+.|++||+++.+....+..+...+.+++|+|+++.+++++
T Consensus 153 ~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (433)
T 3bws_A 153 SGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSN 230 (433)
T ss_dssp TCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEE
T ss_pred CCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 788876 4568999999999965 668999999999999999999888888888888999999999999887665
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE--------CCCcEEEEECCCCeeeEEEecCCCC
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--------EDSQIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--------~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
. .++.|++||+.+++.+..+..+. .+..++|+|+++++++++ .||.|++||+.+++.+..+....
T Consensus 231 ~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~-- 303 (433)
T 3bws_A 231 W---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG-- 303 (433)
T ss_dssp T---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE--
T ss_pred c---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC--
Confidence 3 47899999999999888887653 588899999999999988 58999999999998877764322
Q ss_pred CCcceEEEcCCCCEE-EEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCC
Q 001190 630 PNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 708 (1128)
.+.+++|+|+++.+ ++++.++.|++||+.++.. ...+
T Consensus 304 -~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-~~~~---------------------------------------- 341 (433)
T 3bws_A 304 -NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-QKSI---------------------------------------- 341 (433)
T ss_dssp -CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE-EEEE----------------------------------------
T ss_pred -CcceEEECCCCCEEEEEecCCCEEEEEECCCCcE-EEEe----------------------------------------
Confidence 57899999999755 5567899999999876521 1000
Q ss_pred CCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeecccee
Q 001190 709 VRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ 788 (1128)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 788 (1128)
.+...+.+++|+|+|+++++++.+..
T Consensus 342 -----------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~- 367 (433)
T 3bws_A 342 -----------------------------------------------------PVFDKPNTIALSPDGKYLYVSCRGPN- 367 (433)
T ss_dssp -----------------------------------------------------ECSSSEEEEEECTTSSEEEEEECCCC-
T ss_pred -----------------------------------------------------cCCCCCCeEEEcCCCCEEEEEecCCC-
Confidence 03345678888888887777665410
Q ss_pred EeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEE
Q 001190 789 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTT 867 (1128)
Q Consensus 789 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~ 867 (1128)
. .+..++++++ ||.|++||+.+++.+..
T Consensus 368 -----------------------------------------~----------~~~~~~~~g~~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 368 -----------------------------------------H----------PTEGYLKKGLVLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp -----------------------------------------C----------TTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred -----------------------------------------c----------cccccccccccceEEEEEECCCCcEEEE
Confidence 0 0223444555 78999999999999988
Q ss_pred eeCCCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEeccc
Q 001190 868 FMSPPPASTFLAFHPQDNNIIAIGTE-DSTIHIYNVRV 904 (1128)
Q Consensus 868 ~~~~~~~v~~l~~s~~d~~~lasg~~-dg~v~iwd~~~ 904 (1128)
+.. ...+.+++|+| ++++|++++. |+.|++|+++.
T Consensus 397 ~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 397 WEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred ecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 876 45789999999 8888887764 99999999863
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=6.5e-27 Score=246.98 Aligned_cols=220 Identities=16% Similarity=0.136 Sum_probs=166.4
Q ss_pred CcccEEEEEEecC----cceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEE
Q 001190 763 TSSKVVRLLYTNS----AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1128)
Q Consensus 763 ~~~~i~~l~~s~~----g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 838 (1128)
+...|+.++++|| ++.++.++.+ +++|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l--------------------------------------------- 142 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL--------------------------------------------- 142 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEE---------------------------------------------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEec---------------------------------------------
Confidence 4456778888888 8888887644 555632
Q ss_pred eccCCCeEEEEe---CCeEEEEEC-CCceEEEEeeCCCCCeeEEEEcC--CCCCEEEEEeCCCcEEEEecccceeeeccc
Q 001190 839 LSKNDSYVMSAT---GGKISLFNM-MTFKVMTTFMSPPPASTFLAFHP--QDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1128)
Q Consensus 839 ~s~dg~~la~~~---dg~i~vwd~-~~~~~~~~~~~~~~~v~~l~~s~--~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 912 (1128)
++|+++.++. |+.|++|++ .+++.+..+.+|...++.++|++ +++.+||+|+.|++|+|||+.+|++++++.
T Consensus 143 --~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~ 220 (356)
T 2w18_A 143 --TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH 220 (356)
T ss_dssp --TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred --CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence 4566666653 788888888 55888888888999999988887 467999999999999999999999999998
Q ss_pred cccc---CeeEEEEcCCCCEE------------EEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCE
Q 001190 913 GHQK---RITGLAFSTSLNIL------------VSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 977 (1128)
Q Consensus 913 ~h~~---~V~~l~~s~d~~~l------------~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 977 (1128)
+|.. .+.+++|+|+|.++ ++|+.|++|++||..+++.+.........++. ..+ +..+.++.+
T Consensus 221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~-~~~--lsg~~sg~~ 297 (356)
T 2w18_A 221 IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA-GRF--LEGDVKDHC 297 (356)
T ss_dssp CCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC-CCE--EEEEEETTE
T ss_pred CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc-cee--EccccCCCE
Confidence 7543 67788999999876 66888999999999999876655443334443 222 333444778
Q ss_pred EEEEe-cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEec
Q 001190 978 MLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 978 l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
+++++ |++|+|||+.+++.+..+..|. ...+.+++|||||++|++|+.|++|+|||+
T Consensus 298 lASgS~DgTIkIWDl~tGk~l~tL~gH~--~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 298 AAAILTSGTIAIWDLLLGQCTALLPPVS--DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCC----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEecCCC--CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 88876 9999999999999999887653 334456899999999999999999999996
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.7e-27 Score=272.54 Aligned_cols=311 Identities=14% Similarity=0.209 Sum_probs=235.0
Q ss_pred cCCCcEEEEEEeCCCC---------cEEEEeec----cCeEEEEEccCCceeccccccccccc--------ccCccccce
Q 001190 342 HQGSTVISMDFHPSHQ---------TLLLVGSS----NGEITLWELAMRDRLVSKPFKIWDMA--------ACSLPFQAS 400 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~---------~lla~gs~----d~~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 400 (1128)
.-.-+..++.|.|+.. ..+++|+. ...|.|.++.-..........-+|.. .....+...
T Consensus 43 ~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 122 (430)
T 2xyi_A 43 ALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE 122 (430)
T ss_dssp ECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEE
T ss_pred CCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEE
Confidence 3445678999999752 35677765 35778876541100000000001000 001112233
Q ss_pred eccCCCcceEEEEEccC-CCEEEEEeCCCeEEEEEccCC-------CcceeceeecccccceeEEEEecCCCeEEEEEec
Q 001190 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG 472 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~vwd~~~~-------~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s 472 (1128)
...+|.+.|++++|+|+ +.+||+++.||.|++||+.+. ........+.+|...|++++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 46789999999999997 789999999999999999861 112233367899999999999999875 699999
Q ss_pred CCCeEEEEe-cCCCe-------EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCC---CceeeecCCCCeE
Q 001190 473 DDKLIKVWE-LSGRK-------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWC 541 (1128)
Q Consensus 473 ~d~~i~vWd-~~g~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~i 541 (1128)
.||.|++|| ..+.. ...+.+|...|.+++|++. ++.++++++.||.|++||++.. .....+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999 54321 4567789999999999874 3579999999999999999876 4556677888999
Q ss_pred EEEEEcCCCCe-EEEeeeccCCCceEEEEeCCC-CceeeEeccccCCceeEEEEeCCCC-EEEEEECCCcEEEEECCCC-
Q 001190 542 TTMLYSADGSR-LFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV- 617 (1128)
Q Consensus 542 ~~~~~s~~g~~-l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~- 617 (1128)
++++|+|++.. +++++ .++.|++||+++ ++.+..+.+|.. .+.+++|+|+++ .|++++.||.|++||+...
T Consensus 281 ~~i~~~p~~~~~l~tg~----~dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGS----ADKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp EEEEECSSCTTEEEEEE----TTSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred EEEEeCCCCCCEEEEEe----CCCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 99999999985 66666 489999999998 567888888876 899999999985 6889999999999999772
Q ss_pred -------------eeeEEEecCCCCCCcceEEEcCCCC-EEEEEEcCCcEEEEEcccC
Q 001190 618 -------------NILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 618 -------------~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~ 661 (1128)
+.+.... ++...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 3444443 4455799999999999 9999999999999998764
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=4.3e-26 Score=260.86 Aligned_cols=327 Identities=10% Similarity=0.109 Sum_probs=253.4
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEE-EEEeccCcEEEEecCCCCceeeecCCCCeEEEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 544 (1128)
++++++.|+.|++|| .+++.+..+.+|.. +.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 789999999999999 88888888887754 89999977 55665 677799999999998887777766555 89999
Q ss_pred EEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEE-EEEECCCcEEEEECCCCeeeEEE
Q 001190 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTST 623 (1128)
Q Consensus 545 ~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~ 623 (1128)
+|+|+|+++++++. .++.|++||+.+++.+..+..+. .+..++|+|+++++ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999998877653 46899999999999988887654 57889999999988 57778999999999999988888
Q ss_pred ecCCCCCCcceEEEcCCCCEE-EEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcce
Q 001190 624 DAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~ 702 (1128)
..+. .+.+++|+|+++.+ ++++.++.|++||+.++.. ...
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~----------------------------------- 195 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-IDT----------------------------------- 195 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEE-----------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-EEE-----------------------------------
Confidence 7543 46899999999887 5667789999999765410 000
Q ss_pred ecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEe
Q 001190 703 VERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 782 (1128)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 782 (1128)
T Consensus 196 -------------------------------------------------------------------------------- 195 (391)
T 1l0q_A 196 -------------------------------------------------------------------------------- 195 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe----CCeEEEEE
Q 001190 783 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT----GGKISLFN 858 (1128)
Q Consensus 783 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----dg~i~vwd 858 (1128)
. .+...+.+++|+|+|+++++++ ++.|++||
T Consensus 196 --------~-------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 196 --------V-------------------------------------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp --------E-------------------------------------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred --------E-------------------------------------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 0 0223356677888887777664 57899999
Q ss_pred CCCceEEEEeeCCCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEecccceeeecccccccCee---EEE------------
Q 001190 859 MMTFKVMTTFMSPPPASTFLAFHPQDNNII-AIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT---GLA------------ 922 (1128)
Q Consensus 859 ~~~~~~~~~~~~~~~~v~~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~---~l~------------ 922 (1128)
+.+++.+..+..|. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.
T Consensus 231 ~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 308 (391)
T 1l0q_A 231 TGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSAD 308 (391)
T ss_dssp TTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCC
T ss_pred CCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccc
Confidence 99999888888654 578999999 77766 6778999999999999999888876655421 122
Q ss_pred EcCCC----------CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE
Q 001190 923 FSTSL----------NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 980 (1128)
Q Consensus 923 ~s~d~----------~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 980 (1128)
|+.+. ..+...+.|..+++||+..|... . .......|+++|.+.+.
T Consensus 309 fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~-----~-------~~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 309 FKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS-----K-------KQNPTHTYSETGIYTVR 364 (391)
T ss_dssp EEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE-----C-------SSSCEECCSSCEEEEEE
T ss_pred cccccccccccccceEEEEeCCCCceEEEEECCCCccc-----C-------cCCCeEEeCCCceEEEE
Confidence 22221 34666677899999999887531 0 12234679999998876
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-27 Score=276.04 Aligned_cols=248 Identities=11% Similarity=0.103 Sum_probs=204.1
Q ss_pred CCCCeeEEEeccCCCeE-EEEe-CCeEEEEECC--CceEEEEee--CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecc
Q 001190 830 LEEAVPCIALSKNDSYV-MSAT-GGKISLFNMM--TFKVMTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 903 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~l-a~~~-dg~i~vwd~~--~~~~~~~~~--~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~ 903 (1128)
|...|.+++|+|+|++| ++++ ||.|++||+. +++.+..+. .|...|.+++|+| ++++|++|+.||.|++|++.
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecC
Confidence 56689999999999996 7776 8999999999 888888876 5678899999999 99999999999999999999
Q ss_pred cceeee----cccccccCeeEEEEcCC---CCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCC
Q 001190 904 VDEVKS----KLKGHQKRITGLAFSTS---LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 904 ~~~~~~----~l~~h~~~V~~l~~s~d---~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
+++... .+.+|.+.|++++|+|+ +++|++++.|+.|++||+.+++....+ ..+|. ..+.+++|+ ++.
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----~~~h~-~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW----LFGHK-HFVSSICCG-KDY 253 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE----CCCCS-SCEEEEEEC-STT
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee----ecCCC-CceEEEEEC-CCC
Confidence 887554 78899999999999999 999999999999999999987754332 22333 789999999 999
Q ss_pred EEEEEe-cCeEEEEecCCcccccccccCC----------------------CCCCCeEEEEEeeCCCEEEEEe-cCCcEE
Q 001190 977 RMLVVH-ETQLAIYDASKMERIRQWTPQD----------------------ALSAPISCAVYSCNSQLVFATF-CDGNIG 1032 (1128)
Q Consensus 977 ~l~~~~-d~~i~v~d~~~~~~~~~~~~~~----------------------~h~~~v~~l~~s~dg~~l~t~~-~dg~i~ 1032 (1128)
+|++++ |+.|++||+.+++.+..+..+. .....|.+++|+||+++|++++ .|+.|+
T Consensus 254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~ 333 (450)
T 2vdu_B 254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII 333 (450)
T ss_dssp EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence 999976 9999999999998776654321 2256799999999999999998 899999
Q ss_pred EEec--CCC---ceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEEC-------CCcEEEEcCCCCCCCcc
Q 001190 1033 VFDA--DTL---RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT-------DGSVKVMEPSESEGKWG 1099 (1128)
Q Consensus 1033 vwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~-------dg~i~iWd~~~~~~~w~ 1099 (1128)
||++ .++ +.+..+. .+ ..+.+++|+| + .++++.+. +..|.+|.+....++|.
T Consensus 334 iw~~~~~~~~~l~~~~~~~------------~~-~~v~~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 334 ILEMSEKQKGDLALKQIIT------------FP-YNVISLSAHN-D-EFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEEECSSSTTCEEEEEEEE------------CS-SCEEEEEEET-T-EEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred EEEeccCCCCceeeccEec------------cC-CceEEEEecC-C-cEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 9999 555 5555555 23 5679999999 3 45555443 55689998876655663
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.3e-27 Score=264.27 Aligned_cols=279 Identities=8% Similarity=0.058 Sum_probs=210.5
Q ss_pred EEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC
Q 001190 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (1128)
Q Consensus 458 ~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 536 (1128)
.+.+++. ++++|+.||+|++|| .+++.+..+. ...|.++.+++. +++++.|++|++|+.+.
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 4456777 899999999999999 8898888876 466778888763 99999999999998642
Q ss_pred CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC--CCCEEEEEECCCcEEEEEC
Q 001190 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 537 ~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~ 614 (1128)
.+.+|+..+++.+..+...+...+.+++|+| +++++++++.||.|++||+
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 3677888888877777644344899999999 9999999999999999999
Q ss_pred CCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccc
Q 001190 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 694 (1128)
++++.......+ +...+.+++|+|++.+|++|+.||.|++||+.++......+.
T Consensus 157 ~~~~~~~~~~~~-~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~------------------------- 210 (343)
T 3lrv_A 157 EDDSQYIVHSAK-SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP------------------------- 210 (343)
T ss_dssp SSSCEEEEECCC-SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC-------------------------
T ss_pred CCCcEEEEEecC-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe-------------------------
Confidence 999886655433 334699999999999999999999999999876521100000
Q ss_pred cCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEec
Q 001190 695 SGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 774 (1128)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 774 (1128)
.
T Consensus 211 -------------------------------------------------------------------~------------ 211 (343)
T 3lrv_A 211 -------------------------------------------------------------------V------------ 211 (343)
T ss_dssp -------------------------------------------------------------------C------------
T ss_pred -------------------------------------------------------------------c------------
Confidence 0
Q ss_pred CcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeE
Q 001190 775 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKI 854 (1128)
Q Consensus 775 ~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i 854 (1128)
.|...|.+++|+|+|.+|++++++.|
T Consensus 212 ------------------------------------------------------~h~~~v~~l~fs~~g~~l~s~~~~~v 237 (343)
T 3lrv_A 212 ------------------------------------------------------DEEAKIKEVKFADNGYWMVVECDQTV 237 (343)
T ss_dssp ------------------------------------------------------CTTSCEEEEEECTTSSEEEEEESSBE
T ss_pred ------------------------------------------------------cCCCCEEEEEEeCCCCEEEEEeCCeE
Confidence 15566777777777777777776677
Q ss_pred EEEECCCceEEEEeeC---CCCCe--eEEEEcCCCCCEEEEEeC-CCcEEEEecccceeeecccccccCeeEEEEcC---
Q 001190 855 SLFNMMTFKVMTTFMS---PPPAS--TFLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVKSKLKGHQKRITGLAFST--- 925 (1128)
Q Consensus 855 ~vwd~~~~~~~~~~~~---~~~~v--~~l~~s~~d~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~--- 925 (1128)
++||+.+++....+.. |...+ .+++|+| ++++|++++. |+.|++|++.+....... .++..++|++
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~ 312 (343)
T 3lrv_A 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTA 312 (343)
T ss_dssp EEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----C
T ss_pred EEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCcccc
Confidence 7777776655444332 33333 4699999 9999999998 999999999765433222 6678889998
Q ss_pred CCCEEEEEcCCCcEEEEECCC
Q 001190 926 SLNILVSSGADAQLCVWSIDT 946 (1128)
Q Consensus 926 d~~~l~s~~~Dg~i~iwd~~~ 946 (1128)
+.+.+++++.|+.+.++-...
T Consensus 313 ~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 313 DFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp CCCEEEEEEETTEEEEEEECS
T ss_pred ccceeEEEecCCceEEEEecC
Confidence 888999999999999886544
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=268.01 Aligned_cols=268 Identities=8% Similarity=0.062 Sum_probs=213.3
Q ss_pred EEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCe
Q 001190 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1128)
Q Consensus 350 v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 429 (1128)
..+.+|++ ++++|+.||+|+|||+.+++.+.. +. ...|.+++|+|+ +++++.|++
T Consensus 42 ~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~ 96 (343)
T 3lrv_A 42 KSMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNR 96 (343)
T ss_dssp SSSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTE
T ss_pred hhhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCe
Confidence 34456776 789999999999999999887643 11 457888889998 999999999
Q ss_pred EEEEEcc---------CCCcceeceeecccccceeEEEEec--CCCeEEEEEecCCCeEEEEe-cCCCeEEEec-CCCCC
Q 001190 430 IQLYSYA---------GSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAP 496 (1128)
Q Consensus 430 i~vwd~~---------~~~~~~~~~~~~~h~~~v~~l~fs~--d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~-~h~~~ 496 (1128)
|++|+.. +++.++.. ..+|.+.|.+++|+| +++ ++++|+.|++|++|| .+++.+.... .|...
T Consensus 97 i~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 97 LLLLYPGNQITILDSKTNKVLREI--EVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEE--ECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred EEEEEccCceEEeecCCcceeEEe--ecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 9999765 43333321 226778999999999 999 899999999999999 8888876664 45568
Q ss_pred eEEEeccCCCCccEEEEEeccCcEEEEecCCCCce-eeecC-CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 497 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~-~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
|.+++|++ ++.+|++|+.||.|++||++++... ..+.. |...|.+++|+|+|.+|++++ ++.|++||++++
T Consensus 173 i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~ 245 (343)
T 3lrv_A 173 YSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKD 245 (343)
T ss_dssp CCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSS
T ss_pred eEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCC
Confidence 99999977 6789999999999999999998877 67777 889999999999999999987 348999999998
Q ss_pred ceeeEeccccC--Cce--eEEEEeCCCCEEEEEEC-CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC---CCCEEEE
Q 001190 575 TIKRTYAGFRK--KSN--GVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAV 646 (1128)
Q Consensus 575 ~~~~~~~~~~~--~~v--~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp---~~~~l~~ 646 (1128)
+.+..+..+.. ..+ .+++|+|++++|++++. |+.|++|++......... .++..++|++ +...+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 87666554211 123 36999999999999998 999999999765443333 2467888888 8899999
Q ss_pred EEcCCcEEEEEcc
Q 001190 647 TTADNGFKILANA 659 (1128)
Q Consensus 647 ~~~dg~i~iw~~~ 659 (1128)
++.||.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999987543
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.2e-28 Score=297.84 Aligned_cols=253 Identities=19% Similarity=0.294 Sum_probs=213.9
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecC--CCeEEEEEecCCCeEE
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d--~~~~~l~s~s~d~~i~ 478 (1128)
++.+|.+.|++++|+|+|++|++|+.||.|+|||+.++.. .....+.+|.++|++++|+++ ++ +|++|+.||+|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 4789999999999999999999999999999999985432 233368899999999999988 88 899999999999
Q ss_pred EEe-cCCC--eEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCC--ceeeecCCCCeEEEEEEcC-----
Q 001190 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (1128)
Q Consensus 479 vWd-~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~~~~s~----- 548 (1128)
+|| .+++ .+..+.+|...|.+++|++..++.++++|+.||.|++||++... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 999 6665 67888999999999999886447899999999999999998773 3446677888999999999
Q ss_pred --------CCCeEEEeeeccCCCceEEEEeCCCC----ceeeEeccccCCceeEEEEeCC---CCEEEEEECCCcEEEEE
Q 001190 549 --------DGSRLFSCGTSKDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (1128)
Q Consensus 549 --------~g~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iwd 613 (1128)
++..+++++ .++.|++||++++ .....+.+|.. .|.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs----~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGG----ADNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEE----TTSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEE----CCCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 589999988 4899999999877 55667778876 8999999999 89999999999999999
Q ss_pred CCCCeee---EEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 614 MDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 614 ~~~~~~~---~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+.++... .......+...|.+++|+|+++++++++.||.|++|++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 12222345568999999999999999999999999998864
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.7e-27 Score=271.47 Aligned_cols=303 Identities=12% Similarity=0.092 Sum_probs=199.2
Q ss_pred CcEEEEEE---eCCCCcEEEEeeccCeEEEEEccCCceecc-----cccccccccccC-----ccccceeccCCCcceEE
Q 001190 345 STVISMDF---HPSHQTLLLVGSSNGEITLWELAMRDRLVS-----KPFKIWDMAACS-----LPFQASIFKDVPISVSR 411 (1128)
Q Consensus 345 ~~V~~v~f---spdg~~lla~gs~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~~h~~~V~~ 411 (1128)
....++.| +|++..++++| .++.|.+|+......... ..+..+...... ..........|...+..
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 34555555 45555566665 578899998643322110 001111110000 00111223445566666
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcce--eceeecccccceeEEEEec--------CCCeEEEEEecCCCeEEEEe
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAY--------PNKLLCVVTCGDDKLIKVWE 481 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~~--~~~~~~~h~~~v~~l~fs~--------d~~~~~l~s~s~d~~i~vWd 481 (1128)
..+++++.+||+|+.|++|+|||..+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+|||
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWR 172 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEE
Confidence 6777888999999999999999999986543 2335789999999999998 788 899999999999999
Q ss_pred -cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-------------------------c
Q 001190 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------------------------D 535 (1128)
Q Consensus 482 -~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-------------------------~ 535 (1128)
.++.++..+.+|..+|.+++|+|. +..+|++++.||+|++||+.++...... .
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCCCceeeeecCCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 788888888899999999999874 2358999999999999999876543321 2
Q ss_pred CCCCeEEEEEEc-CCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCcee------------------EEEEeC-
Q 001190 536 APGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG------------------VVQFDT- 595 (1128)
Q Consensus 536 ~~~~~i~~~~~s-~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~------------------~~~~~~- 595 (1128)
.+...+.++.|+ +||+.+++++ .++.+++||+.+++....+..+.. .+. ...+++
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s----~d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMC----KSGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEEC----TTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred cccccceeeeeecCCCCEEEEEe----CCCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEccC
Confidence 344567788876 7999999987 489999999998876666554432 111 122333
Q ss_pred -CCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 596 -TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 596 -~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
++.++++|+.||.|++||..+++.......+. .+|.+++|+|||++||+++.+| +.+|.+.
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 23356667789999999999998877766544 3899999999999999998765 5566553
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=5e-26 Score=240.21 Aligned_cols=283 Identities=13% Similarity=0.091 Sum_probs=194.3
Q ss_pred EEEEEEe-CCCCcEEEEeeccCeEEEEEccCC---ceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 347 VISMDFH-PSHQTLLLVGSSNGEITLWELAMR---DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 347 V~~v~fs-pdg~~lla~gs~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
|.++-|- ++.+.+.++......|++|+..++ +.++ .+++|+.+|..++|+||-.-|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLY-------------------TWHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEE-------------------EEECCSSCEEEECCCTTCCSCE
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeE-------------------EEeccCceeEEEEEcCccccee
Confidence 5555553 444444444445789999999988 4443 3667777777777777544333
Q ss_pred EEe--CCCeEEEEEcc--CC-CcceeceeecccccceeEEEEecCCCeEEEEEec--CCCeEEEEe--cCCCeEEEecCC
Q 001190 423 VAF--TKHLIQLYSYA--GS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGH 493 (1128)
Q Consensus 423 s~~--~d~~i~vwd~~--~~-~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s--~d~~i~vWd--~~g~~~~~~~~h 493 (1128)
... .=..-.|+-+. .. +.+.+...-.+|...|..+ ++++ ++.+++ .|+.|++|+ .+|+.+..+.+|
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 221 11111111111 00 0111111123444445444 4555 455533 588999999 558888888899
Q ss_pred CCCeEEEeccC-CCCccEEEEEeccCcEEEEecCCCCceeeecCCCC---eEEEEEEcCCCCeEEEeee--------ccC
Q 001190 494 EAPVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSADGSRLFSCGT--------SKD 561 (1128)
Q Consensus 494 ~~~v~~~~~~~-~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---~i~~~~~s~~g~~l~~~~~--------~~~ 561 (1128)
...+..++|++ .+++.+|++++.|++|++||+.+++...++..+.. .+.+++|+|+|.++++++. .+.
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 99999999988 56789999999999999999999998888876543 6778899999998865331 123
Q ss_pred CCceEEEEeCCCCceeeEe-----ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCc-ceE
Q 001190 562 GDSFLVEWNESEGTIKRTY-----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL-PRL 635 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~v 635 (1128)
.|++|++||..+++.+..+ .+|.. .+ +..+.++..+++++.|++|+|||+.+++.+.++..+.. .+ .++
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~--~vvs~v 332 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQAG-RF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD--QHWSFV 332 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCCC-CE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC----CCCCEE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCcc-ee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC--CeEEEE
Confidence 5899999999999987765 35544 22 33344478999999999999999999999999875433 34 468
Q ss_pred EEcCCCCEEEEEEcCCcEEEEEc
Q 001190 636 RFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 636 ~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
+|+|||++|++|+.|++|+|||+
T Consensus 333 afSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999999985
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.1e-25 Score=261.56 Aligned_cols=332 Identities=13% Similarity=0.084 Sum_probs=253.2
Q ss_pred CCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC--CCCceeeEeccc
Q 001190 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTIKRTYAGF 583 (1128)
Q Consensus 506 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~ 583 (1128)
+++.++++++.|++|.+||..+++....+..... +..++|+|||+++++++. ++.|.+||+ .+++.+.++...
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~----d~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEEEECC
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECC----CCeEEEEECcCCCCcEEEEEecC
Confidence 3668899999999999999999888877774433 889999999999999884 699999999 889888888753
Q ss_pred cCCceeEEEEeC----CCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCC---------CCCcceEEEcCCCCEE-EEEE
Q 001190 584 RKKSNGVVQFDT----TQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG---------LPNLPRLRFSKEGNLL-AVTT 648 (1128)
Q Consensus 584 ~~~~v~~~~~~~----~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~sp~~~~l-~~~~ 648 (1128)
. ....++|+| +|+++++++ .++.|.+||..+++++..+...+. ...+..+.++|++..+ ++..
T Consensus 222 ~--~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 222 I--EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp S--EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred C--CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 3 578899999 999999988 589999999999999888865321 1246677788765544 4444
Q ss_pred cCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCC
Q 001190 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKP 728 (1128)
Q Consensus 649 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1128)
.++.|.+||..+.....
T Consensus 300 ~~g~i~vvd~~~~~~l~--------------------------------------------------------------- 316 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLT--------------------------------------------------------------- 316 (543)
T ss_dssp TTTEEEEEECTTSSSCE---------------------------------------------------------------
T ss_pred CCCeEEEEEecCCCcce---------------------------------------------------------------
Confidence 56777777764431000
Q ss_pred cccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeee
Q 001190 729 RTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA 808 (1128)
Q Consensus 729 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~ 808 (1128)
+.
T Consensus 317 -------------------------------------------------------------~~----------------- 318 (543)
T 1nir_A 317 -------------------------------------------------------------VT----------------- 318 (543)
T ss_dssp -------------------------------------------------------------EE-----------------
T ss_pred -------------------------------------------------------------eE-----------------
Confidence 00
Q ss_pred ccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeC----CCCCeeEEEEcC
Q 001190 809 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS----PPPASTFLAFHP 882 (1128)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~----~~~~v~~l~~s~ 882 (1128)
. + .+...+..++|+|||+++++++ +++|.+||+.+++++..+.. |.+....+ ++|
T Consensus 319 -----~----------i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 319 -----S----------I---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp -----E----------E---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred -----E----------e---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 0 0 0223355688999999877664 78999999999999888874 55444443 577
Q ss_pred CCCCEEEEEe-CCCcEEEEeccc-------ceeeecccccccCeeEEEEcCCCCEEEEEc-------CCCcEEEEECCCC
Q 001190 883 QDNNIIAIGT-EDSTIHIYNVRV-------DEVKSKLKGHQKRITGLAFSTSLNILVSSG-------ADAQLCVWSIDTW 947 (1128)
Q Consensus 883 ~d~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~-------~Dg~i~iwd~~~~ 947 (1128)
+++.+++++. .|++|.+||+.+ +++++++.+|.+.+..++|+||+++|++++ .+++|.+||+.++
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 4577888876 689999999998 899999999999999999999999999987 2679999999987
Q ss_pred ccc-ceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe
Q 001190 948 EKR-KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 948 ~~~-~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
+.. ..++ +..+.....+...+..+.|++||++|+++.
T Consensus 460 ~~~~~~~~------------------------------------------v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 460 DAKYQVLP------------------------------------------IAEWADLGEGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp TSCCEEEC------------------------------------------HHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred CCCeEEee------------------------------------------chhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence 643 1111 111111112267889999999999999763
Q ss_pred -----cCCcEEEEecCCCceEEEeC
Q 001190 1027 -----CDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1027 -----~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.|+.|.|||.+|++++..+.
T Consensus 498 ~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 498 WNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp ECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ecCCCCCCeEEEEECCCceEEEeec
Confidence 37999999999999999888
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=8.9e-27 Score=265.48 Aligned_cols=250 Identities=6% Similarity=-0.071 Sum_probs=176.6
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc----
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---- 416 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---- 416 (1128)
..|...+....++++++ +||+|+.|++|+|||..+++...... ...+.||.+.|.+++|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~~~~ 150 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADVYSA 150 (393)
T ss_dssp C----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEEECT
T ss_pred cccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEcccccc
Confidence 34555566666677776 88999999999999999887643211 123889999999999998
Q ss_pred ----CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE--
Q 001190 417 ----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN-- 489 (1128)
Q Consensus 417 ----dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~-- 489 (1128)
||++||+|+.|++|+|||+.++.++. .+.+|...|.+++|+|++.. +|++|+.|++|++|| .+++....
T Consensus 151 ~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 151 DNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp TCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC------
T ss_pred ccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccccc
Confidence 89999999999999999999877655 46689999999999999865 799999999999999 66654322
Q ss_pred -----------------------ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEE-
Q 001190 490 -----------------------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML- 545 (1128)
Q Consensus 490 -----------------------~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~- 545 (1128)
..+|...+.++.|.. +++..|++++.|+++++||+........+..+...+..+.
T Consensus 227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~ 305 (393)
T 4gq1_A 227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNL 305 (393)
T ss_dssp ----CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------CC
T ss_pred ccCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEE
Confidence 246778888888863 4778999999999999999987665555544443333332
Q ss_pred -----------------EcC-CCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC
Q 001190 546 -----------------YSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1128)
Q Consensus 546 -----------------~s~-~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg 607 (1128)
++| .+..+++++. .|+.|++||+.+++....+.+|.. .|.+++|+|+|++|++++.+|
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs---~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 306 LPNVQGISLFPSLLGACPHPRYMDYFATAHS---QHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp SCSEEEECSSCCSSCCEECSSCTTEEEEEET---TTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE
T ss_pred ccccccccccCcceeEEEccCCCCEEEEEEC---CCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC
Confidence 222 2334444332 589999999999999888888876 899999999999999998766
Q ss_pred cEEEEECC
Q 001190 608 QIKFWDMD 615 (1128)
Q Consensus 608 ~i~iwd~~ 615 (1128)
+.+|.+.
T Consensus 382 -v~lvrL~ 388 (393)
T 4gq1_A 382 -VLLTRLM 388 (393)
T ss_dssp -EEEEEEG
T ss_pred -eEEEEEe
Confidence 5566553
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=9.8e-25 Score=257.32 Aligned_cols=326 Identities=14% Similarity=0.113 Sum_probs=250.4
Q ss_pred EecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEec--CCCCceeeec
Q 001190 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY--DTMGSRVDYD 535 (1128)
Q Consensus 459 fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~--~~~~~~~~~~ 535 (1128)
|+|++. ++++++.|++|.+|| .+++++..+..+.. +..++|++ +|++|++++.|+.|++||+ .+.+....+.
T Consensus 145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 788887 889999999999999 89999999884333 88899976 7789999999999999999 6666666665
Q ss_pred CCCCeEEEEEEcC----CCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc----------cCCceeEEEEeCCCCEEE
Q 001190 536 APGHWCTTMLYSA----DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF----------RKKSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 536 ~~~~~i~~~~~s~----~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~ 601 (1128)
.+..+..++|+| ||+++++++. .++.|.+||..+++++..+..+ ....+..+.+++++..++
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 456789999999 9999998874 3789999999999999888752 233578899999876654
Q ss_pred -EEECCCcEEEEECCCCeeeE--EEecCCCCCCcceEEEcCCCCEEEEEE-cCCcEEEEEcccCccccccccCCcccccc
Q 001190 602 -AVGEDSQIKFWDMDNVNILT--STDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALR 677 (1128)
Q Consensus 602 -~~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (1128)
+...++.|.+||..+.+.+. .+.. ...+..++|+|+|+++++++ .+++|.+||..+++ +...+...
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~-l~~~i~~g------ 365 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR-LSALVDVG------ 365 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE-EEEEEECS------
T ss_pred EEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCCe-EEEeeccC------
Confidence 45688999999998876544 3332 23578899999999877665 58899999987762 11110000
Q ss_pred CcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEe
Q 001190 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (1128)
Q Consensus 678 ~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (1128)
.
T Consensus 366 ------------~------------------------------------------------------------------- 366 (543)
T 1nir_A 366 ------------K------------------------------------------------------------------- 366 (543)
T ss_dssp ------------S-------------------------------------------------------------------
T ss_pred ------------C-------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEE
Q 001190 758 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (1128)
Q Consensus 758 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 837 (1128)
. .|......+
T Consensus 367 ---~-------------------------------------------------------------------ph~g~g~~~ 376 (543)
T 1nir_A 367 ---T-------------------------------------------------------------------PHPGRGANF 376 (543)
T ss_dssp ---S-------------------------------------------------------------------BCCTTCEEE
T ss_pred ---C-------------------------------------------------------------------CCCCCCccc
Confidence 0 022222222
Q ss_pred EeccC-CCeEEEEe--CCeEEEEECCC-------ceEEEEeeCCCCCeeEEEEcCCCCCEEEEEe-------CCCcEEEE
Q 001190 838 ALSKN-DSYVMSAT--GGKISLFNMMT-------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-------EDSTIHIY 900 (1128)
Q Consensus 838 ~~s~d-g~~la~~~--dg~i~vwd~~~-------~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~-------~dg~v~iw 900 (1128)
++|+ |.+++++. +++|.+||+.+ +++++++.+|...+..++++| ++++|++++ .+++|.+|
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEE
Confidence 3555 55556653 57888888887 899999999998999999999 999999987 27799999
Q ss_pred ecccceee-ecc--------cccccCeeEEEEcCCCCEEEEE-----cCCCcEEEEECCCCcccceeE
Q 001190 901 NVRVDEVK-SKL--------KGHQKRITGLAFSTSLNILVSS-----GADAQLCVWSIDTWEKRKSVT 954 (1128)
Q Consensus 901 d~~~~~~~-~~l--------~~h~~~V~~l~~s~d~~~l~s~-----~~Dg~i~iwd~~~~~~~~~~~ 954 (1128)
|+.+++.. ..+ ..|...+..++|+|||++|+++ +.|+.|.|||.++++++..+.
T Consensus 455 d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 455 DLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp ETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 99998766 332 4567889999999999988865 247999999999998765443
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=2.1e-24 Score=247.06 Aligned_cols=305 Identities=9% Similarity=0.020 Sum_probs=233.6
Q ss_pred CcEEEEEEeCCCCcEEEEee----ccC----eEEEEEc--cCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 345 STVISMDFHPSHQTLLLVGS----SNG----EITLWEL--AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs----~d~----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
..|...+|++.|..++++|+ .|| +|+|||+ .+++.+.. ..+.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ-----------------NSYKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE-----------------EEEEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee-----------------eEEEcChhHHHHHHH
Confidence 46888899999988888887 357 8999999 88886632 226678888888877
Q ss_pred cc--------------CCCEEEEEeCC------CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC
Q 001190 415 SP--------------DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1128)
Q Consensus 415 sp--------------dg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d 474 (1128)
++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 75 26677776654 799999998643 33 4778999999999999999 78888877
Q ss_pred C---eEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEE-EEeccCc--EEEEecCCCCceeeecCCCCeEEEEEEc
Q 001190 475 K---LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-STAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYS 547 (1128)
Q Consensus 475 ~---~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~~wd~~~~~~~~~~~~~~~~i~~~~~s 547 (1128)
+ .|++|| .+++. ..+..|.+.+.+++|+| ||+.|+ +++.++. |++||+.++.. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcE-EEeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 999999 66665 46777888999999977 667676 6666655 99999987654 5566677789999999
Q ss_pred CCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC---CcEEEEECCCCeeeEEEe
Q 001190 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 548 ~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~ 624 (1128)
|||++|++++. .++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ +.|++||+.+++... +.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ec
Confidence 99999998773 223448999999888743 3444433 67789999999999998764 689999999987743 33
Q ss_pred cCCCCCCcceEEEcCCCCEEEEEEcCC---cEEEEEcccCccccccccCCccccccCcceeeeeecccc
Q 001190 625 AEGGLPNLPRLRFSKEGNLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1128)
Q Consensus 625 ~~~~~~~v~~v~~sp~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 690 (1128)
.+ . .+.+++|+|+|++|++++.++ .|++||+..+ ..+.+.. +.+.+.+++|+|.-.
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~-----~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPA-----TDGQVKFPAWSPYLH 410 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCC-----SSSEEEEEEECCCCC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeC-----CCCCCcCCccccccc
Confidence 22 2 689999999999999988877 7999998754 2333433 345688899998643
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.7e-23 Score=259.24 Aligned_cols=303 Identities=12% Similarity=0.059 Sum_probs=211.7
Q ss_pred CCcEEEEEEeCCCCcEEEEeec-cC-----eEEEEEccCCceecccccccccc-----cccCccccceeccCCCcceEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSS-NG-----EITLWELAMRDRLVSKPFKIWDM-----AACSLPFQASIFKDVPISVSRV 412 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~-d~-----~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~h~~~V~~l 412 (1128)
...|.+++|||||+ +|++++. |+ .|.+||+.+++............ ...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 44699999999999 5677776 88 99999999987643211000000 0000000000000001458899
Q ss_pred EEccCCCEEEEEeCCCeEEEEEccCCC--cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE
Q 001190 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1128)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~ 489 (1128)
+|||||++|++++. +.|.+||+.++. .+. .+..|...+.+++|+|||+ +|+.++ ++.|++|| .+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 899999999882 232 3667888999999999999 677776 56999999 56655544
Q ss_pred ecCCCCC----------------eEEEeccCCCCccEEEEEeccC---------------------------------cE
Q 001190 490 FEGHEAP----------------VYSICPHHKENIQFIFSTAIDG---------------------------------KI 520 (1128)
Q Consensus 490 ~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i 520 (1128)
...+... +.+++|+| ||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4444432 36788866 778899988776 78
Q ss_pred EEEecCC-CCceeeec--CCCCeEEEEEEcCCCCeEEEeeec-cCCCceEEEEeCCCCceeeEeccccCC---ceeEEEE
Q 001190 521 KAWLYDT-MGSRVDYD--APGHWCTTMLYSADGSRLFSCGTS-KDGDSFLVEWNESEGTIKRTYAGFRKK---SNGVVQF 593 (1128)
Q Consensus 521 ~~wd~~~-~~~~~~~~--~~~~~i~~~~~s~~g~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~~ 593 (1128)
.+||+++ ++...... .+...+..++| |||++|++...+ ...+..|++||+.+++....+..+... .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 8899887 66544332 35568999999 999999977642 234678999999999988777665532 3457899
Q ss_pred eCCCCEEEEEECCCcEEEEECC-CCeeeEEEecCCCCCCcceE-EEcCCCCEEEEEEc-CC--cEEEEEccc
Q 001190 594 DTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTTA-DN--GFKILANAI 660 (1128)
Q Consensus 594 ~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~~~~~-dg--~i~iw~~~~ 660 (1128)
+|||+.+++++.||.+.+|.+. ++. ...+..+ ...+..+ .|+|+++.|+..+. ++ .+++|++..
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999988888899987887765 344 4444432 3356676 59999998765554 44 889998754
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=8.1e-23 Score=254.91 Aligned_cols=244 Identities=9% Similarity=0.032 Sum_probs=173.9
Q ss_pred CCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCC----------------eeEEEEcCCCCCEEEEEeC
Q 001190 830 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA----------------STFLAFHPQDNNIIAIGTE 893 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~----------------v~~l~~s~~d~~~lasg~~ 893 (1128)
+...+..++|||||++|++++++.|++||+.+++.......+... +.+++||| ||++|++++.
T Consensus 150 ~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~ 228 (741)
T 2ecf_A 150 GEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARI 228 (741)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEE
T ss_pred CCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEE
Confidence 455678888999999888888888999999888776554443332 47899999 8999998877
Q ss_pred CC---------------------------------cEEEEeccc-ceeeeccc--ccccCeeEEEEcCCCCEEEEEcC--
Q 001190 894 DS---------------------------------TIHIYNVRV-DEVKSKLK--GHQKRITGLAFSTSLNILVSSGA-- 935 (1128)
Q Consensus 894 dg---------------------------------~v~iwd~~~-~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~~~-- 935 (1128)
|+ .|++||+.+ ++...... .|...+..++| |||++|++++.
T Consensus 229 d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~ 307 (741)
T 2ecf_A 229 DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR 307 (741)
T ss_dssp ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEET
T ss_pred cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecc
Confidence 65 889999988 87654433 47788999999 99999997654
Q ss_pred ---CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecC-CcccccccccCCCCCCCe
Q 001190 936 ---DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDAS-KMERIRQWTPQDALSAPI 1010 (1128)
Q Consensus 936 ---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~-~~~~~~~~~~~~~h~~~v 1010 (1128)
+..|++||+.+++......... .. ....+..++|+|||++++++. ++.++||.+. +++ ...+..+ ...+
T Consensus 308 ~~~~~~i~~~d~~~g~~~~~~~~~~-~~-~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~---~~~v 381 (741)
T 2ecf_A 308 DQKKLDLVEVTLASNQQRVLAHETS-PT-WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG---NWSV 381 (741)
T ss_dssp TSSEEEEEEEETTTCCEEEEEEEEC-SS-CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS---SSCE
T ss_pred cCCeEEEEEEECCCCceEEEEEcCC-CC-cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec---ceEE
Confidence 5679999999987655443321 10 001456789999999777765 6767777765 344 4544443 6678
Q ss_pred EEE-EEeeCCCEEEE-EecCC--cEEEEecCC-CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC--
Q 001190 1011 SCA-VYSCNSQLVFA-TFCDG--NIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-- 1083 (1128)
Q Consensus 1011 ~~l-~~s~dg~~l~t-~~~dg--~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-- 1083 (1128)
..+ .|+|||++|+. ++.++ .++||++.. +.....+. . ...+..++|+| |++.|+....+
T Consensus 382 ~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~------------~-~~~~~~~~~sp-dg~~l~~~~~~~~ 447 (741)
T 2ecf_A 382 DELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS------------K-APGMHSASFAR-NASVYVDSWSNNS 447 (741)
T ss_dssp EEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC------------C-SCSEEEEEECT-TSSEEEEEEEETT
T ss_pred EeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc------------c-CCCceEEEECC-CCCEEEEEecCCC
Confidence 787 59999997765 55555 899999874 54444444 1 22346899999 57776655443
Q ss_pred --CcEEEEcCCCCC
Q 001190 1084 --GSVKVMEPSESE 1095 (1128)
Q Consensus 1084 --g~i~iWd~~~~~ 1095 (1128)
+.+.+|+...++
T Consensus 448 ~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 448 TPPQIELFRANGEK 461 (741)
T ss_dssp EEEEEEEEETTSCE
T ss_pred CCCeEEEEEcCCCe
Confidence 468899876543
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.5e-23 Score=260.80 Aligned_cols=321 Identities=10% Similarity=0.089 Sum_probs=229.3
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCc---ceEEEEEccCCCEEE
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVG 422 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~la 422 (1128)
.+.+++|||||+ ++++ +.||+|++||+.+++... ++.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEEE
Confidence 467899999999 6666 689999999999987643 2444554 499999999999999
Q ss_pred EEeCC---------CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecC
Q 001190 423 VAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1128)
Q Consensus 423 s~~~d---------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~ 492 (1128)
+++.+ +.|.+||+.+++. +.+....+|...+..++|||||+ .|+.++. +.|++|| .+|+.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7788999999875 33323445666799999999999 5777764 8999999 67776665555
Q ss_pred CCCCe------------------EEEeccCCCCccEEEEEeccC----------------------------------cE
Q 001190 493 HEAPV------------------YSICPHHKENIQFIFSTAIDG----------------------------------KI 520 (1128)
Q Consensus 493 h~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 520 (1128)
+...+ .+++|+| ||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 7888876 778898887653 79
Q ss_pred EEEecCCCCceeeecCC------CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCce----eE
Q 001190 521 KAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN----GV 590 (1128)
Q Consensus 521 ~~wd~~~~~~~~~~~~~------~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~~ 590 (1128)
++||+.++.....+..+ ...+..++|||||+++++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999887754555543 557899999999998877654333467899999999988776655433233 36
Q ss_pred EEEeCCCCEEEEE--ECCC------cEEEEE-CCCCee--eEEEecCCCCCCcce-EEEcCCCCEEEEEEcC---CcEEE
Q 001190 591 VQFDTTQNHFLAV--GEDS------QIKFWD-MDNVNI--LTSTDAEGGLPNLPR-LRFSKEGNLLAVTTAD---NGFKI 655 (1128)
Q Consensus 591 ~~~~~~~~~l~~~--s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~sp~~~~l~~~~~d---g~i~i 655 (1128)
++|+|||+.|+.. ..++ .|++|| ..+++. ...+.. ++ ..+.. ++|+|||+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS-GD-WDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC-SS-SCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec-CC-eEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 8999999977764 4666 577788 445441 333321 11 23443 6899999999877665 78999
Q ss_pred EEcccCcc-ccccccCCccccccCcceeeeeecccccccccCC
Q 001190 656 LANAIGLR-SLRAVENPPFEALRTPIESVALKVSASSAVSSGT 697 (1128)
Q Consensus 656 w~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 697 (1128)
|++..... ....+... ..+...+..++|+|||+.++....
T Consensus 389 ~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCD--LVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEECSSTTCCCBCSSTT--SSSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEeCCCCCCcceeccc--ccCCCCeEEEEECCCCCEEEEEcc
Confidence 99875421 12222210 002334678999999998876543
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=1.5e-22 Score=231.64 Aligned_cols=278 Identities=10% Similarity=0.045 Sum_probs=209.0
Q ss_pred cccC--CCCCcceEEee-cCCCcEEEEEEeC--------------CCCcEEEEeec--c---CeEEEEEccCCceecccc
Q 001190 327 TWSL--DDLPRTVAVSL-HQGSTVISMDFHP--------------SHQTLLLVGSS--N---GEITLWELAMRDRLVSKP 384 (1128)
Q Consensus 327 ~~~~--~~~~~~~~~~~-~h~~~V~~v~fsp--------------dg~~lla~gs~--d---~~i~iwd~~~~~~~~~~~ 384 (1128)
+|++ ..........+ +|...+..+++++ .+.++++++.. + +.|++||+..+.. .
T Consensus 97 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~--- 172 (415)
T 2hqs_A 97 LVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-F--- 172 (415)
T ss_dssp EEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-E---
T ss_pred EEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-E---
Confidence 7877 44332222333 4888899888886 14435444432 2 7999999975432 1
Q ss_pred cccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCC---eEEEEEccCCCcceeceeecccccceeEEEEec
Q 001190 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH---LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (1128)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~---~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~ 461 (1128)
.+.+|...|.+++|||||++||+++.++ .|++||+.+++... +..|.+.+.+++|+|
T Consensus 173 ----------------~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~----l~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 173 ----------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSP 232 (415)
T ss_dssp ----------------EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----EECCSSCEEEEEECT
T ss_pred ----------------EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE----eecCCCcccCEEEcC
Confidence 2677899999999999999999999875 99999999987543 667888999999999
Q ss_pred CCCeEEEE-EecCCCe--EEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEec-cC--cEEEEecCCCCceeee
Q 001190 462 PNKLLCVV-TCGDDKL--IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDY 534 (1128)
Q Consensus 462 d~~~~~l~-s~s~d~~--i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~ 534 (1128)
||+. |+ +++.|+. |++|| .+++ ...+..|...+.+++|+| ||++|++++. ++ .|.+||+.++.. ..+
T Consensus 233 dg~~--la~~~~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~sp--dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l 306 (415)
T 2hqs_A 233 DGSK--LAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFP--DSQNLAFTSDQAGRPQVYKVNINGGAP-QRI 306 (415)
T ss_dssp TSSE--EEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCC-EEC
T ss_pred CCCE--EEEEEecCCCceEEEEECCCCC-EEeCcCCCCcccceEECC--CCCEEEEEECCCCCcEEEEEECCCCCE-EEE
Confidence 9994 55 7766654 99999 5554 577888999999999977 6788888776 45 577778776543 344
Q ss_pred cCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC---cEEE
Q 001190 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKF 611 (1128)
Q Consensus 535 ~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~i 611 (1128)
..+...+.+++|+|||++|++++.+ +++..|++||+.+++.. .+..+. .+..++|+|+|++|++++.++ .|++
T Consensus 307 ~~~~~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~ 382 (415)
T 2hqs_A 307 TWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNL 382 (415)
T ss_dssp CCSSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCCEE-ECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred ecCCCcccCeEECCCCCEEEEEECc-CCceEEEEEECCCCCEE-EecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEE
Confidence 5566789999999999999988752 23578999999998874 444443 688899999999999988776 7999
Q ss_pred EECCCCeeeEEEecCCCCCCcceEEEcCCC
Q 001190 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1128)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 641 (1128)
||+.++ ....+.. +...|.+++|+|..
T Consensus 383 ~d~~g~-~~~~l~~--~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 383 VSTDGR-FKARLPA--TDGQVKFPAWSPYL 409 (415)
T ss_dssp EETTSC-CEEECCC--SSSEEEEEEECCCC
T ss_pred EECCCC-cEEEeeC--CCCCCcCCcccccc
Confidence 998754 4455543 34479999999964
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.3e-21 Score=217.74 Aligned_cols=279 Identities=10% Similarity=0.044 Sum_probs=205.9
Q ss_pred EEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeC-CC
Q 001190 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-KH 428 (1128)
Q Consensus 350 v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~ 428 (1128)
+.|.+++++++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777777889999999999999999887642 23345556 9999999997777765 88
Q ss_pred eEEEEEccCCCc-ceeceeecccccceeEEEEecCCCeEEEEEecCCC---eEEEEe-cCCCeEEEecCCCCCeEEEecc
Q 001190 429 LIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK---LIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1128)
Q Consensus 429 ~i~vwd~~~~~~-~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~---~i~vWd-~~g~~~~~~~~h~~~v~~~~~~ 503 (1128)
.|.+||+.+++. .. .+..+..+..+++|+|||+ +++++..++ .|.+|| .+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999876 33 3555666666699999999 566555553 999999 778877777654 446899997
Q ss_pred CCCCccEEEE-EeccCc-EEEEecCCCCcee----eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce-
Q 001190 504 HKENIQFIFS-TAIDGK-IKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI- 576 (1128)
Q Consensus 504 ~~~~~~~l~s-~~~dg~-i~~wd~~~~~~~~----~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~- 576 (1128)
+ +|+++++ ...++. |.+|+++..+... ........+..++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 7 5554544 455588 9999998655432 22234456899999999997776653 478999999999988
Q ss_pred --eeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCee--eEEEecC--CCCCC---cceEEEcCCCCEEEE
Q 001190 577 --KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI--LTSTDAE--GGLPN---LPRLRFSKEGNLLAV 646 (1128)
Q Consensus 577 --~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~--~~~~~~~--~~~~~---v~~v~~sp~~~~l~~ 646 (1128)
+..+... ..+..++|+|+++++++++ .++.|.+||..+++. +..+... ..... ...++|+||+++|++
T Consensus 212 ~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 289 (331)
T 3u4y_A 212 TLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFI 289 (331)
T ss_dssp EEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred ceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEE
Confidence 7777654 2567899999999887765 578899999999887 4433322 11112 245899999999877
Q ss_pred EEc-CCcEEEEEcccC
Q 001190 647 TTA-DNGFKILANAIG 661 (1128)
Q Consensus 647 ~~~-dg~i~iw~~~~~ 661 (1128)
++. ++.|.+|++...
T Consensus 290 ~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 290 SANISRELKVFTISGK 305 (331)
T ss_dssp EETTTTEEEEEETTSC
T ss_pred ecCCCCcEEEEEecCC
Confidence 665 569999998764
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=3.6e-22 Score=248.45 Aligned_cols=385 Identities=11% Similarity=0.074 Sum_probs=253.7
Q ss_pred eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCC--ceeEEEEeCCCCEEEEEECC---------Cc
Q 001190 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGED---------SQ 608 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~d---------g~ 608 (1128)
.+.+++|+|||+++++ + .++.|++||+.+++....+..+... .+..++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-e----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997765 3 3779999999999988888766531 38899999999999999864 78
Q ss_pred EEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecc
Q 001190 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1128)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 688 (1128)
+++||+.+++.........+...+..++|||||+.|+.++. +.|++|++.++.. .+....+...
T Consensus 93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~-------------- 156 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEG-------------- 156 (723)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTT--------------
T ss_pred EEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCC--------------
Confidence 89999999876322222233334789999999999999986 7999999877632 1111100000
Q ss_pred cccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEE
Q 001190 689 ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVV 768 (1128)
Q Consensus 689 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~ 768 (1128)
.+ ..+ +.-|... ..-.+.+.
T Consensus 157 --~~-------------------------------------~~g-----~~~~v~~----------------ee~~~~~~ 176 (723)
T 1xfd_A 157 --VI-------------------------------------YNG-----LSDWLYE----------------EEILKTHI 176 (723)
T ss_dssp --TE-------------------------------------EEE-----ECCHHHH----------------HTTSSSSE
T ss_pred --ce-------------------------------------ECc-----ccceeEE----------------EEeccCcc
Confidence 00 000 0000000 00122457
Q ss_pred EEEEecCcceEEEeecc-ceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEE
Q 001190 769 RLLYTNSAVGLLALGSN-GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (1128)
Q Consensus 769 ~l~~s~~g~~l~~~~~d-g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 847 (1128)
+++|+|||+.|++++.+ +.+.+|++.... + .+...+..+.|+++|..
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------------~----------~~~~~~~~~~~~~~G~~-- 224 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------------G----------SIYPTVKPYHYPKAGSE-- 224 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCS--------------------S----------SSSCCCEEEECCBTTSC--
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccC--------------------C----------cCCCcceeccCCCCCCC--
Confidence 89999999999988765 567777653210 0 02234778899888863
Q ss_pred EEeCCeEEEEECCCceEEEEeeCC------CCCeeEEEEcCCCCCEEEEEeC----CCcEEEEecccceeeeccccc-cc
Q 001190 848 SATGGKISLFNMMTFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGTE----DSTIHIYNVRVDEVKSKLKGH-QK 916 (1128)
Q Consensus 848 ~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~~~~~l~~h-~~ 916 (1128)
..+..|++||+.+++....+..+ ...+..++||| ||++|++... +..|++||+.+++....+..+ .+
T Consensus 225 -~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 302 (723)
T 1xfd_A 225 -NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEA 302 (723)
T ss_dssp -CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSS
T ss_pred -CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCC
Confidence 12457999999998876666654 55789999999 8988877653 357999999999877665543 33
Q ss_pred Ce----eEEEEcCCCCEEEE--EcCCC------cEEEEE-CCCCcc--cceeEEeecCCCCCCCccE-EEEcCCCCEEEE
Q 001190 917 RI----TGLAFSTSLNILVS--SGADA------QLCVWS-IDTWEK--RKSVTIHIPAGKTPTGDTR-VQFNADQVRMLV 980 (1128)
Q Consensus 917 ~V----~~l~~s~d~~~l~s--~~~Dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~v~~-v~~s~d~~~l~~ 980 (1128)
.+ ..++|+|||++|+. ...|+ .|.+|| ..+++. ...+. .++ ..+.. ++|+|||++|+.
T Consensus 303 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~----~~~--~~~~~~~~~spdg~~l~~ 376 (723)
T 1xfd_A 303 WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT----SGD--WDVTKILAYDEKGNKIYF 376 (723)
T ss_dssp CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC----CSS--SCEEEEEEEETTTTEEEE
T ss_pred EEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee----cCC--eEEEeeeEEcCCCCEEEE
Confidence 33 37899999997775 44666 466777 344431 21111 111 22333 689999999976
Q ss_pred Ee-c---CeEEEEecCCcc--cccccccCCCCCCCeEEEEEeeCCCEEEEEecC-C--cEEEEecCCCceEEEe
Q 001190 981 VH-E---TQLAIYDASKME--RIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-G--NIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 981 ~~-d---~~i~v~d~~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-g--~i~vwd~~~~~~~~~~ 1045 (1128)
.. + +.+++|++.... ....+.....|...+..++|||||++|+..... + ...+++..++..+..+
T Consensus 377 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 377 LSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp EESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred EEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 53 3 789999987543 233333211135678899999999988875432 2 3455676666655444
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=6.2e-21 Score=214.55 Aligned_cols=277 Identities=10% Similarity=0.090 Sum_probs=214.6
Q ss_pred ecCCCcEEEEEEeCCCCcEEEEeec------cCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE
Q 001190 341 LHQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1128)
Q Consensus 341 ~~h~~~V~~v~fspdg~~lla~gs~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 414 (1128)
......+..++|+|+|++++++... ++.|.+||..+++.+.. +. ....+..++|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~~ 96 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGATI 96 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEEE
Confidence 3455679999999999955444433 67999999999886642 11 2335778999
Q ss_pred ccCCCEEEEE-eCCCeEEEEEccCCCcceeceeeccccc---------ceeEEEEecCCCeEEEEEecCCCeEEEEe-cC
Q 001190 415 SPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVG---------AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1128)
Q Consensus 415 spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~---------~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~ 483 (1128)
+|||++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+|+.+++...+.++.|.+|| .+
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 9999966655 4579999999999887653 333322 27889999999953222224689999999 88
Q ss_pred CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC----CCCeEEEEEEcCCCCeEEEeeec
Q 001190 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA----PGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 484 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~----~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
++.+..+..+...+.+++|++ +++++++++.++.|.+||+.+++....+.. +...+..++|+|+|++++++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~- 250 (353)
T 3vgz_A 174 IKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS- 250 (353)
T ss_dssp TEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES-
T ss_pred CceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC-
Confidence 888888876666688888866 668899999999999999988877666554 3456888999999998877763
Q ss_pred cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
.++.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+.+++|+
T Consensus 251 --~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s 322 (353)
T 3vgz_A 251 --KAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALS 322 (353)
T ss_dssp --SSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEEC
T ss_pred --CCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEc
Confidence 46899999999999888877543 24589999999777766 68999999999999988887543 47899999
Q ss_pred CCCCEEEEEEcCC
Q 001190 639 KEGNLLAVTTADN 651 (1128)
Q Consensus 639 p~~~~l~~~~~dg 651 (1128)
|+|++|+++..++
T Consensus 323 ~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 323 ADGKTLYVSVKQK 335 (353)
T ss_dssp TTSCEEEEEEECC
T ss_pred CCCCEEEEEEccc
Confidence 9999888777654
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.8e-21 Score=239.37 Aligned_cols=238 Identities=10% Similarity=-0.009 Sum_probs=165.9
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcc-eeceeecccc-----------------cceeEEEEecCCCeEEEE
Q 001190 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHV-----------------GAVNDLAFAYPNKLLCVV 469 (1128)
Q Consensus 408 ~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~-----------------~~v~~l~fs~d~~~~~l~ 469 (1128)
.+..+.|+ |..+++++.++ | +||+.+|+.+ +. +..|. ..|.+++|+|| +. +++
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~-~~~ 97 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL-VVL 97 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-TE-EEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-Ce-EEE
Confidence 35557888 66777787888 8 9999999863 32 22332 56999999999 52 344
Q ss_pred EecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC-----CCceeeecCCCCe----
Q 001190 470 TCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHW---- 540 (1128)
Q Consensus 470 s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-----~~~~~~~~~~~~~---- 540 (1128)
+ . ++.|++||..+.....+..+...+.+++|+| ||+.|+++ .++.|++|++.+ ++...........
T Consensus 98 ~-~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 F-T-QGGLVGFDMLARKVTYLFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp E-E-TTEEEEEETTTTEEEEEECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred E-E-CCEEEEEECCCCceEEccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 4 3 5999999944444455666777888899977 67788884 789999999987 5554433333222
Q ss_pred ----------EEEEEEcCCCCeEEEeeecc-----------------------------CCCceEEEEeCCCCceeeEec
Q 001190 541 ----------CTTMLYSADGSRLFSCGTSK-----------------------------DGDSFLVEWNESEGTIKRTYA 581 (1128)
Q Consensus 541 ----------i~~~~~s~~g~~l~~~~~~~-----------------------------~~~~~i~~wd~~~~~~~~~~~ 581 (1128)
+.++.|||||++|++++.+. ..+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 47899999999999886321 135789999999988655443
Q ss_pred c-ccCCceeEEEEeCCCCEEEEEECCC-----cEEEEECCCC-eeeEEEecC--CCCCCcceEEEcC--CCCEEEEEEcC
Q 001190 582 G-FRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNV-NILTSTDAE--GGLPNLPRLRFSK--EGNLLAVTTAD 650 (1128)
Q Consensus 582 ~-~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~-~~~~~~~~~--~~~~~v~~v~~sp--~~~~l~~~~~d 650 (1128)
. .....+..++|+|||++|++++.++ .|++||+.++ ......... .....+..++|+| ||++++++..+
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence 2 2233688899999999999988765 8999999998 433332211 1111346789999 99999888888
Q ss_pred CcEEEEEcc
Q 001190 651 NGFKILANA 659 (1128)
Q Consensus 651 g~i~iw~~~ 659 (1128)
+.+++|.+.
T Consensus 333 g~~~l~~~~ 341 (706)
T 2z3z_A 333 GWNHLYLYD 341 (706)
T ss_dssp SSCEEEEEE
T ss_pred CccEEEEEE
Confidence 888888764
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2e-21 Score=240.69 Aligned_cols=321 Identities=12% Similarity=0.095 Sum_probs=220.0
Q ss_pred eeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeE-EEecCCC-----------------CCeEEEeccCCCCccEEEEE
Q 001190 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-FNFEGHE-----------------APVYSICPHHKENIQFIFST 514 (1128)
Q Consensus 454 v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~-~~~~~h~-----------------~~v~~~~~~~~~~~~~l~s~ 514 (1128)
+..+.|+ |. .+++++.|+ | +|| .+|+.+ ..+..|. ..|.+++|+++ + .++.+
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~-~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--G-LVVLF 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--T-EEEEE
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--C-eEEEE
Confidence 5668888 55 456666677 8 999 778763 4443332 46999999874 3 44444
Q ss_pred eccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC-----CceeeEeccccCCc--
Q 001190 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-----GTIKRTYAGFRKKS-- 587 (1128)
Q Consensus 515 ~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-----~~~~~~~~~~~~~~-- 587 (1128)
.++.|++||+.++... .+..+...+.+++|||||++|+++. ++.|++||+.+ ++.......+....
T Consensus 99 -~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 4599999999776443 3444556788899999999999864 78999999998 77665444433311
Q ss_pred -----------eeEEEEeCCCCEEEEEE---------------------------------CCCcEEEEECCCCeeeEEE
Q 001190 588 -----------NGVVQFDTTQNHFLAVG---------------------------------EDSQIKFWDMDNVNILTST 623 (1128)
Q Consensus 588 -----------v~~~~~~~~~~~l~~~s---------------------------------~dg~i~iwd~~~~~~~~~~ 623 (1128)
+..++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 47899999999999987 4578999999998865544
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEEcCC-----cEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCC
Q 001190 624 DAEGGLPNLPRLRFSKEGNLLAVTTADN-----GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 698 (1128)
....+...+..++|+|||+.|++++.++ .|++||+.++... ..
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~-~~------------------------------- 299 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV-RT------------------------------- 299 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE-EE-------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee-eE-------------------------------
Confidence 3333444688999999999999987765 7888876554100 00
Q ss_pred CcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcce
Q 001190 699 ANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 778 (1128)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 778 (1128)
T Consensus 300 -------------------------------------------------------------------------------- 299 (706)
T 2z3z_A 300 -------------------------------------------------------------------------------- 299 (706)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEecc--CCCeEEEEe-CCeEE
Q 001190 779 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK--NDSYVMSAT-GGKIS 855 (1128)
Q Consensus 779 l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~la~~~-dg~i~ 855 (1128)
+...... .....+.+++|+| ||+++++++ ++.++
T Consensus 300 ~~~~~~~-------------------------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 300 LFVETDK-------------------------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp EEEEECS-------------------------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred EEEccCC-------------------------------------------CeECccCCceeecCCCCEEEEEEccCCccE
Confidence 0000000 0011234567888 888777776 67777
Q ss_pred EEECC-CceEEEEeeCCCCCeeE-EEEcCCCCCEEEE-EeCCC----cEEEEecccceeeecccccccCeeEEEEcCCCC
Q 001190 856 LFNMM-TFKVMTTFMSPPPASTF-LAFHPQDNNIIAI-GTEDS----TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 856 vwd~~-~~~~~~~~~~~~~~v~~-l~~s~~d~~~las-g~~dg----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 928 (1128)
+|++. +++.+..+..+...+.. ++|+| +++.|+. +..++ .|+.||+.+++ ...+. |...+.+++|+|||+
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~ 413 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGS 413 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSS
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCC
Confidence 77765 56667777777777876 89999 7766654 44444 67777777765 33444 677899999999999
Q ss_pred EEEEEcCC----CcEEEEECCCCc
Q 001190 929 ILVSSGAD----AQLCVWSIDTWE 948 (1128)
Q Consensus 929 ~l~s~~~D----g~i~iwd~~~~~ 948 (1128)
+++..+.+ +.|.+||+.+++
T Consensus 414 ~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 414 AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEecCCCCCcEEEEEECCCCe
Confidence 88876443 569999998876
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=2.4e-21 Score=211.71 Aligned_cols=257 Identities=17% Similarity=0.162 Sum_probs=192.8
Q ss_pred EeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccC-CCc
Q 001190 362 VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG-SND 440 (1128)
Q Consensus 362 ~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~-~~~ 440 (1128)
.++.|+.|.+||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44678999999998877542 455888999999999999999987 78999999999 775
Q ss_pred ceeceeeccc-ccceeEEEEecCCCeEEEEEec--CCCeEEEEe--cCCCeEEEecCCCCCeEEEeccCCCCccEEE-EE
Q 001190 441 LRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-ST 514 (1128)
Q Consensus 441 ~~~~~~~~~h-~~~v~~l~fs~d~~~~~l~s~s--~d~~i~vWd--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~ 514 (1128)
... ..+| ...|.+++|+|||+ +|++++ .++.+.||. ..+.....+..+. .+..++|++ +++.|+ ++
T Consensus 76 ~~~---~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~ 147 (297)
T 2ojh_A 76 EKV---DTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSP--DGKSFTYCG 147 (297)
T ss_dssp EEC---CCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECT--TSSEEEEEE
T ss_pred eEe---ccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECC--CCCEEEEEE
Confidence 542 3344 47899999999999 677776 344555555 4444455555444 488889976 556666 78
Q ss_pred eccCcEEEEecCCC-CceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC-CCceeeEeccccCCceeEEE
Q 001190 515 AIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQ 592 (1128)
Q Consensus 515 ~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~ 592 (1128)
+.++.+++|+++.. .....+..+...+.+++|+|+|+.+++++. .++.+.+|++. .+.....+..+.. .+..++
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ 223 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFPH 223 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCeE
Confidence 89999999997543 334455566678999999999998887763 35667778775 4555566666554 688899
Q ss_pred EeCCCCEEEEEECC-----------CcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCC
Q 001190 593 FDTTQNHFLAVGED-----------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1128)
Q Consensus 593 ~~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg 651 (1128)
|+|++++|++++.+ +.|++||+.+++........++...+.+++|+|+++.|++++.+.
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999998765 569999999887654443223344789999999999999887653
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=4.2e-20 Score=206.73 Aligned_cols=273 Identities=14% Similarity=0.161 Sum_probs=192.2
Q ss_pred CcEEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC-CeEEEEE
Q 001190 357 QTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK-HLIQLYS 434 (1128)
Q Consensus 357 ~~lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d-~~i~vwd 434 (1128)
++++++++.|+.|.+||+.. ++.... ....|...+.+++|+|+|++|++++.+ +.|.+|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 44666668899999999963 322110 123467789999999999999999886 9999999
Q ss_pred cc--CCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC---eEEEecCCCCCeEEEeccCCCCc
Q 001190 435 YA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPVYSICPHHKENI 508 (1128)
Q Consensus 435 ~~--~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~---~~~~~~~h~~~v~~~~~~~~~~~ 508 (1128)
++ +++. .....+..+. .+..++|+|+|+. +++++..++.|.+|| .++. .+..+..+ ..+.+++|++ ++
T Consensus 67 ~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~--dg 140 (343)
T 1ri6_A 67 IAPDDGAL-TFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP--DN 140 (343)
T ss_dssp ECTTTCCE-EEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT--TS
T ss_pred ecCCCCce-eeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC--CC
Confidence 98 5542 2222343333 7899999999994 334555689999999 4332 33444433 4588888876 66
Q ss_pred cEEEEEe-ccCcEEEEecCC-CCcee----eecC-CCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC--Cce--e
Q 001190 509 QFIFSTA-IDGKIKAWLYDT-MGSRV----DYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GTI--K 577 (1128)
Q Consensus 509 ~~l~s~~-~dg~i~~wd~~~-~~~~~----~~~~-~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~--~~~--~ 577 (1128)
+++++++ .++.|++||+.. +.... .... .+..+..++|+|+|+++++++. .++.|.+|++.. ++. .
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEE
T ss_pred CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEE
Confidence 7777777 899999999987 43321 2222 3457889999999998876653 478999999953 433 2
Q ss_pred eEecccc-----CCceeEEEEeCCCCEEEEEE-CCCcEEEEECC--C--CeeeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001190 578 RTYAGFR-----KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMD--N--VNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1128)
Q Consensus 578 ~~~~~~~-----~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 647 (1128)
..+.... ...+..++|+|++++|+++. .++.|++||+. + .+.+..+.... .+..++|+|++++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEEE
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEEe
Confidence 2222111 12355799999999888655 78999999998 3 34444444332 37899999999998888
Q ss_pred E-cCCcEEEEEcc
Q 001190 648 T-ADNGFKILANA 659 (1128)
Q Consensus 648 ~-~dg~i~iw~~~ 659 (1128)
+ .++.|.+|+++
T Consensus 295 ~~~~~~v~v~~~d 307 (343)
T 1ri6_A 295 GQKSHHISVYEIV 307 (343)
T ss_dssp CTTTCEEEEEEEE
T ss_pred cCCCCeEEEEEEc
Confidence 8 58999999665
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=8.4e-21 Score=212.44 Aligned_cols=245 Identities=9% Similarity=0.118 Sum_probs=175.1
Q ss_pred CCCCeeEEEeccCCCeEEEEe-C-CeEEEEECC--Cce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEec
Q 001190 830 LEEAVPCIALSKNDSYVMSAT-G-GKISLFNMM--TFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNV 902 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~-d-g~i~vwd~~--~~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~-~dg~v~iwd~ 902 (1128)
+...+.+++|+|||++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 566788999999999988887 4 899999997 554 344555444 789999999 888776555 5889999999
Q ss_pred ---ccceeeecccccccCeeEEEEcCCCCEEEEEc-CCCcEEEEECCC-Cccccee--EEeecCCCCCCCccEEEEcCCC
Q 001190 903 ---RVDEVKSKLKGHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDT-WEKRKSV--TIHIPAGKTPTGDTRVQFNADQ 975 (1128)
Q Consensus 903 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~-~Dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~v~~v~~s~d~ 975 (1128)
.+.+.+..+..+ ..+.+++|+|+|++|++++ .|+.|.+||+.+ ++..... .... .....+..++|+|++
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT---VEGAGPRHMVFHPNE 189 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC---STTCCEEEEEECTTS
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc---CCCCCcceEEECCCC
Confidence 445555555544 4588999999999888776 899999999987 5433222 2221 122567889999999
Q ss_pred CEEEEEe--cCeEEEEecCC--ccc--cccc---ccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecC--CC--ce
Q 001190 976 VRMLVVH--ETQLAIYDASK--MER--IRQW---TPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDAD--TL--RL 1041 (1128)
Q Consensus 976 ~~l~~~~--d~~i~v~d~~~--~~~--~~~~---~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~--~~--~~ 1041 (1128)
++++++. ++.+.+|++.. ++. .... .........+..++|+|||++|+++. .++.|.+||+. ++ +.
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 9887653 78999999953 332 1111 11111134677899999999888554 79999999998 33 33
Q ss_pred EEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEE-CCCcEEEEcCCCC
Q 001190 1042 RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEPSES 1094 (1128)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~-~dg~i~iWd~~~~ 1094 (1128)
+..+. .+. .+..++|+| +++.|++++ .|+.|.+|++...
T Consensus 270 ~~~~~------------~~~-~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 270 EGFQP------------TET-QPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp EEEEE------------CSS-SCCCEEECT-TSSEEEEECTTTCEEEEEEEETT
T ss_pred eeeec------------CCC-ccceEEECC-CCCEEEEecCCCCeEEEEEEcCC
Confidence 33333 111 256799999 578777776 6899999966533
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=1.7e-20 Score=208.87 Aligned_cols=289 Identities=11% Similarity=0.045 Sum_probs=200.9
Q ss_pred EEecCcce-EEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEE
Q 001190 771 LYTNSAVG-LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 849 (1128)
Q Consensus 771 ~~s~~g~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 849 (1128)
.|.+++.+ +++...++.|.+||... ++...... . +...+ .++|+|||++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~~ 57 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT----------------------LEILNQIT-L--GYDFV-DTAITSDCSNVVVT 57 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT----------------------CCEEEEEE-C--CCCEE-EEEECSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc----------------------cceeeeEE-c--cCCcc-eEEEcCCCCEEEEE
Confidence 45555555 55666689999997543 22221111 1 34445 99999999977766
Q ss_pred e--CCeEEEEECCCceE-EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC---cEEEEecccceeeecccccccCeeEEEE
Q 001190 850 T--GGKISLFNMMTFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDS---TIHIYNVRVDEVKSKLKGHQKRITGLAF 923 (1128)
Q Consensus 850 ~--dg~i~vwd~~~~~~-~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~~ 923 (1128)
+ ++.|.+||..+++. ...+..+.....+++|+| ++++++++..++ .|.+||+.+++.+..+..+ ....+++|
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~ 135 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAI 135 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEE
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEE
Confidence 5 67899999999988 777776666666699999 898888655553 8999999999988877654 45689999
Q ss_pred cCCCCEEEEE-cCCCc-EEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCccc---
Q 001190 924 STSLNILVSS-GADAQ-LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMER--- 996 (1128)
Q Consensus 924 s~d~~~l~s~-~~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~--- 996 (1128)
+|||++|+++ ..++. |.+|++............... .......++|+|||++++++. ++.|.+||+.+++.
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL 213 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence 9999855544 55688 999999865433222111111 124578999999999777654 78999999998887
Q ss_pred ccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCce--EEEeCCCCCCCCcccCCCCccceEEEEEecCC
Q 001190 997 IRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRL--RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLE 1073 (1128)
Q Consensus 997 ~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1073 (1128)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+........ ........++|+| |
T Consensus 214 ~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~sp-d 283 (331)
T 3u4y_A 214 LNAVGT----NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP-----RPLFGANQMALNK-T 283 (331)
T ss_dssp EEEEEC----SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC-----GGGTTCCCEEECT-T
T ss_pred eeeccC----CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCC-----CCcccccceEECC-C
Confidence 665553 46678999999999887655 578899999999987 333331100000 1111124589999 5
Q ss_pred CCEE-EEEECCCcEEEEcCCCCCCCcc
Q 001190 1074 PNQF-AIGLTDGSVKVMEPSESEGKWG 1099 (1128)
Q Consensus 1074 ~~~l-~s~~~dg~i~iWd~~~~~~~w~ 1099 (1128)
+.+| +++..++.|.+||+.+....+.
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred CCEEEEecCCCCcEEEEEecCCcccce
Confidence 7766 4555667999999988764443
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=9e-20 Score=204.99 Aligned_cols=273 Identities=11% Similarity=0.108 Sum_probs=208.8
Q ss_pred cccEEEEEEecCcceEEEeec-------cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeE
Q 001190 764 SSKVVRLLYTNSAVGLLALGS-------NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 836 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~-------dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 836 (1128)
...+..++++|+|+++++++. ++.|.+||.. +++...... ....+..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----------------------~~~~~~~~~----~~~~~~~ 93 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----------------------TLEVTQAIH----NDLKPFG 93 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----------------------TCCEEEEEE----ESSCCCS
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----------------------CCeEEEEEe----cCCCcce
Confidence 446789999999998888774 4577777643 332222111 2334678
Q ss_pred EEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCC---------eeEEEEcCCCCCEEEEEe--CCCcEEEEecc
Q 001190 837 IALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPA---------STFLAFHPQDNNIIAIGT--EDSTIHIYNVR 903 (1128)
Q Consensus 837 ~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~---------v~~l~~s~~d~~~lasg~--~dg~v~iwd~~ 903 (1128)
++|+|||++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|.+||..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence 99999999776664 689999999999998888765432 68899999 777666655 58899999999
Q ss_pred cceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-
Q 001190 904 VDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 982 (1128)
Q Consensus 904 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 982 (1128)
+++.+..+..+...+.+++|+|+|++|++++.++.|.+||+.+++........ .......+..++|+|+|++++++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL--DDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC--CSSSCCCEEEEEEETTTTEEEEEES
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC--CCCCCcccceEEECCCCCEEEEEeC
Confidence 99998888766667899999999999999999999999999998765544332 111124567899999999888764
Q ss_pred -cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCC
Q 001190 983 -ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1060 (1128)
Q Consensus 983 -d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1128)
++.|.+||..+++.+..+.... ...++|+|||+++++++ .++.|.+||+.+++.+..+..
T Consensus 251 ~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~------------- 312 (353)
T 3vgz_A 251 KAAEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT------------- 312 (353)
T ss_dssp SSSEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-------------
T ss_pred CCCEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-------------
Confidence 5899999999998877776532 25699999999777665 689999999999998887761
Q ss_pred ccceEEEEEecCCCCEEEEEECCC
Q 001190 1061 TVYPLVVAAHPLEPNQFAIGLTDG 1084 (1128)
Q Consensus 1061 ~~~~~~~~~~p~~~~~l~s~~~dg 1084 (1128)
...+.+++|+| |+++++.+..++
T Consensus 313 ~~~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 313 PTHPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp CSEEEEEEECT-TSCEEEEEEECC
T ss_pred CCCCCeEEEcC-CCCEEEEEEccc
Confidence 12568899999 577666555553
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.7e-19 Score=202.13 Aligned_cols=249 Identities=10% Similarity=0.150 Sum_probs=171.5
Q ss_pred CCCCeeEEEeccCCCeEEEEe---CCeEEEEECCCce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEecc
Q 001190 830 LEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVR 903 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~-~dg~v~iwd~~ 903 (1128)
+...+..++|+|||++++++. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 445677899999999444443 3689999998776 3445455677889999999 888887777 78999999996
Q ss_pred -cc--eeeecccc---------cccCeeEEEEcCCCCEEEEEcCCCcEEEEECC-CCcccceeEEeecCCCCCCCccEEE
Q 001190 904 -VD--EVKSKLKG---------HQKRITGLAFSTSLNILVSSGADAQLCVWSID-TWEKRKSVTIHIPAGKTPTGDTRVQ 970 (1128)
Q Consensus 904 -~~--~~~~~l~~---------h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~ 970 (1128)
++ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++.......... ....+..++
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~---~g~~p~~~~ 193 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME---AGFGPRHLV 193 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC---TTCCEEEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC---CCCCCceEE
Confidence 33 22333221 12348889999999977777778999999998 4543222222221 124567899
Q ss_pred EcCCCCEEEEEe--cCeEEEEecCC--ccc--ccccccCCC---CCCCeEEEEEeeCCCEEEE-EecCCcEEEEecCC-C
Q 001190 971 FNADQVRMLVVH--ETQLAIYDASK--MER--IRQWTPQDA---LSAPISCAVYSCNSQLVFA-TFCDGNIGVFDADT-L 1039 (1128)
Q Consensus 971 ~s~d~~~l~~~~--d~~i~v~d~~~--~~~--~~~~~~~~~---h~~~v~~l~~s~dg~~l~t-~~~dg~i~vwd~~~-~ 1039 (1128)
|+|||++++++. ++.+.+|++.. ++. +..+..... ....+..++|+|||++|++ ...++.|.+|++.. +
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 999999877754 78899999874 432 112211110 0145889999999998865 55689999999973 2
Q ss_pred --ceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEEC-CCcEEEEcC--CCCC
Q 001190 1040 --RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT-DGSVKVMEP--SESE 1095 (1128)
Q Consensus 1040 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~-dg~i~iWd~--~~~~ 1095 (1128)
+.+..+. .+...+..++|+| |+++|++++. ++.|.+|++ .+++
T Consensus 274 ~~~~~~~~~------------~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 274 HLTLIQQIS------------TEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp CEEEEEEEE------------CSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred cEEEeEEEe------------cCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 3333333 2233467899999 6887777665 589999954 4444
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=9.7e-20 Score=203.20 Aligned_cols=268 Identities=7% Similarity=0.001 Sum_probs=199.8
Q ss_pred EEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCc-ceEEEEEccCCCEEEE-EeCCCeEEEEEcc
Q 001190 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI-SVSRVAWSPDGNYVGV-AFTKHLIQLYSYA 436 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~spdg~~las-~~~d~~i~vwd~~ 436 (1128)
++++++.++.|.+||..+++.+.. +..++.. .+.+++|+|||+++++ +..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~------------------~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKV------------------ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE------------------EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEE------------------EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 678899999999999998876542 1112222 4788999999987654 4567899999999
Q ss_pred CCCcceeceeecc---cccceeEEEEecCCCeEEEEEec------------CCCeEEEEe-cCCCeEEEecCCCCCeEEE
Q 001190 437 GSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG------------DDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1128)
Q Consensus 437 ~~~~~~~~~~~~~---h~~~v~~l~fs~d~~~~~l~s~s------------~d~~i~vWd-~~g~~~~~~~~h~~~v~~~ 500 (1128)
+++.+..+. +.. |...+.+++|+|||+ ++++++ .++.|.+|| .+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRID-LSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEEE-CCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeEE-cCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 988665321 111 233688999999999 566554 579999999 77777776664 4457788
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCc----------------
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS---------------- 564 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~---------------- 564 (1128)
+|++ ++++|+++ ++.|.+||+.+++....+..... ...+.|+|+|+.++..+. .++
T Consensus 141 ~~s~--dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWAR--DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE---SSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECT--TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT---TTTEEEEEEEEEBTTSCTT
T ss_pred EECC--CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeecc---CCCceeeeeeccccccccc
Confidence 8866 66777777 68999999988776655554331 112378999987765542 122
Q ss_pred -------eEEEEeCCCCceee-EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEE
Q 001190 565 -------FLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 565 -------~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
.|.+||..+++... .+..+. ..+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMD-VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECS-SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCC-CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 57899999988752 222332 257789999999999888 7999999999999888776542 468999
Q ss_pred EcCCCCEEEEEEcCCcEEEEEcccCc
Q 001190 637 FSKEGNLLAVTTADNGFKILANAIGL 662 (1128)
Q Consensus 637 ~sp~~~~l~~~~~dg~i~iw~~~~~~ 662 (1128)
|+|++++|++++.++.|.+||+.+++
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 99999999999899999999998873
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=3.3e-19 Score=198.81 Aligned_cols=303 Identities=9% Similarity=0.045 Sum_probs=207.2
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCC--eEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecccc--
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-- 584 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-- 584 (1128)
+++++++.++.|.+||+.+++....+..... .+..++|+|+|+.++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 4789999999999999988777666654432 4788999999988776653 47899999999999887776432
Q ss_pred --CCceeEEEEeCCCCEEEEEE------------CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC
Q 001190 585 --KKSNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1128)
Q Consensus 585 --~~~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d 650 (1128)
...+..++|+|+++++++++ .++.|++||+.+++.+..+.... .+.+++|+|++++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--C
Confidence 11466799999999999886 57999999999998887776532 47889999999988888 6
Q ss_pred CcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcc
Q 001190 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRT 730 (1128)
Q Consensus 651 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (1128)
+.|.+||+.++. ....+..... ...+.++|+|+.++..
T Consensus 154 ~~i~~~d~~~~~-~~~~~~~~~~------~~~~~~s~dg~~l~~~----------------------------------- 191 (337)
T 1pby_B 154 RDLHVMDPEAGT-LVEDKPIQSW------EAETYAQPDVLAVWNQ----------------------------------- 191 (337)
T ss_dssp SSEEEEETTTTE-EEEEECSTTT------TTTTBCCCBCCCCCCC-----------------------------------
T ss_pred CeEEEEECCCCc-Eeeeeecccc------CCCceeCCCccEEeee-----------------------------------
Confidence 899999998773 2222221110 0112556665544211
Q ss_pred cCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeecc
Q 001190 731 VDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 810 (1128)
Q Consensus 731 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~ 810 (1128)
...+....+ +.......++..... .....+.+||
T Consensus 192 --~~~~~~~~~-------------------------~~~~~~~~~~~~~~~-~~~~~v~~~d------------------ 225 (337)
T 1pby_B 192 --HESSGVMAT-------------------------PFYTARKDIDPADPT-AYRTGLLTMD------------------ 225 (337)
T ss_dssp --CTTTTEEEE-------------------------EEEEEBTTSCTTSGG-GEEEEEEEEE------------------
T ss_pred --ccCCCceee-------------------------eeecccccccccccc-ccccceEEEe------------------
Confidence 110100000 000000000000000 0111345554
Q ss_pred ceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEE
Q 001190 811 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 890 (1128)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~las 890 (1128)
+.+++.....+.. +...+.+++|+|||++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+| ++++|++
T Consensus 226 ----~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~ 296 (337)
T 1pby_B 226 ----LETGEMAMREVRI--MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVST-DGSTVWL 296 (337)
T ss_dssp ----TTTCCEEEEEEEE--CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECT-TSCEEEE
T ss_pred ----CCCCCceEeecCC--CCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECC-CCCEEEE
Confidence 3444332212222 55678899999999999888 789999999999988887643 4678999999 8888888
Q ss_pred EeCCCcEEEEecccceeeeccccccc
Q 001190 891 GTEDSTIHIYNVRVDEVKSKLKGHQK 916 (1128)
Q Consensus 891 g~~dg~v~iwd~~~~~~~~~l~~h~~ 916 (1128)
++.++.|++||+.+++.+..+..+..
T Consensus 297 ~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 297 GGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp ESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred EcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 89999999999999988877765533
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=7.6e-20 Score=226.97 Aligned_cols=264 Identities=12% Similarity=0.102 Sum_probs=175.3
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCc---ceEEEEEccCCCEEEEEe
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~las~~ 425 (1128)
+++|+|||+ +++++ .|+.|++||+.+++.... +.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEEe
Confidence 679999996 66665 699999999999876431 333333 489999999999999987
Q ss_pred C---------CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe-cCCC
Q 001190 426 T---------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHE 494 (1128)
Q Consensus 426 ~---------d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~-~~h~ 494 (1128)
. ++.|++||+.+++.+... .+ ...+..++|||||+ .|+.+. |+.|++|| .+|+..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 789999999998763111 12 25689999999999 577665 78999999 666654432 2333
Q ss_pred CCe-----------------EEEeccCCCCccEEEEEecc-CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 495 APV-----------------YSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 495 ~~v-----------------~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
..| .+++|+| ||++|++++.| +.+.+|.+..... .....+..+.+...|...
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSP--DG~~la~~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~yp~~g~~~--- 221 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSP--NGKFLAYAEFNDTDIPVIAYSYYGD-----EQYPRTINIPYPKAGAKN--- 221 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECT--TSSEEEEEEEECTTSCEEEEEECCS-----SSSCEEEEEECCBTTSCC---
T ss_pred CCeEcccccceeeeecccCcccEEECC--CCCEEEEEEECCCCCceEEeeccCC-----CCCccceeecCCCCCCCC---
Confidence 222 4788866 77899888765 4555664422211 122345566665555321
Q ss_pred eeccCCCceEEEEeCCCCcee---e-----EeccccCCceeEEEEeCCCCEEEEEECC----CcEEEEE----CCCCeee
Q 001190 557 GTSKDGDSFLVEWNESEGTIK---R-----TYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWD----MDNVNIL 620 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~---~-----~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd----~~~~~~~ 620 (1128)
....|++||+.+++.. . .+.++.. .+..++|+||++.+++.... ..|++|| ..+++..
T Consensus 222 -----~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 222 -----PVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp -----CEEEEEEEESSCHHHHCCEECCCCHHHHTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred -----CeeEEEEEECCCCCccceeEccCCccCCCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 2457999999988753 1 1223443 67889999997766664432 3488999 8887765
Q ss_pred EEEe--cCCCCCCcc-----eEEEcCCCCEEEE--EEcCCcEEEE
Q 001190 621 TSTD--AEGGLPNLP-----RLRFSKEGNLLAV--TTADNGFKIL 656 (1128)
Q Consensus 621 ~~~~--~~~~~~~v~-----~v~~sp~~~~l~~--~~~dg~i~iw 656 (1128)
..+. ..++...+. .+.|+|||+.++. ...+|...||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~ 340 (719)
T 1z68_A 296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH 340 (719)
T ss_dssp GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence 5442 012222454 7899999996654 4455544444
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=1.5e-19 Score=197.24 Aligned_cols=249 Identities=13% Similarity=0.087 Sum_probs=185.2
Q ss_pred cccCCCCCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccC-CceecccccccccccccCccccceeccCC
Q 001190 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1128)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 405 (1128)
+|+... ........|...|.+++|+|||+ +|++++ ++.|.+||+.+ ++.... ..+|
T Consensus 26 ~~d~~~--~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~ 82 (297)
T 2ojh_A 26 IFNIRT--RKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGF 82 (297)
T ss_dssp EEETTT--TEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCTT
T ss_pred EEeCCC--CceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------cccc
Confidence 444433 44555667899999999999999 567664 88999999988 765431 3334
Q ss_pred -CcceEEEEEccCCCEEEEEe--CCCeEEEEEc--cCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 406 -PISVSRVAWSPDGNYVGVAF--TKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 406 -~~~V~~l~~spdg~~las~~--~d~~i~vwd~--~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
...|.+++|+|||++|++++ .++.+.||.+ .+++ .. .+..+ ..+..++|+||++. ++++++.|+.+++|
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIY 156 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEE
T ss_pred ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEE
Confidence 47899999999999999998 3345556555 4443 22 23333 34899999999994 34478889999999
Q ss_pred e--cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe-ccCcEEEEecC-CCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 481 E--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD-TMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 481 d--~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
+ ..+.....+..|...+.+++|++ ++++|+.++ .++.+++|+++ .......+..+...+..++|+|+|++|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 157 SMDIDSGVETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp EEETTTCCEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred EEECCCCcceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence 9 55666777888888999999977 567776655 58999999987 445555666677789999999999999988
Q ss_pred eeccC-------CCceEEEEeCCCCceeeE--eccccCCceeEEEEeCCCCEEEEEECCC
Q 001190 557 GTSKD-------GDSFLVEWNESEGTIKRT--YAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1128)
Q Consensus 557 ~~~~~-------~~~~i~~wd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~s~dg 607 (1128)
+.+.. .+..|++||+.+++.... +.++.. .+..++|+|++++|++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred EcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 75321 236799999998876443 335554 688899999999999887653
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=4.7e-19 Score=203.11 Aligned_cols=316 Identities=14% Similarity=0.117 Sum_probs=202.8
Q ss_pred cccEEEEEEecCcceEEEeeccceeEeeeccccCCC-CCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 764 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN-PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 764 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
...+..+++++++.++++++.++ +++|+....... ..+.. ...+....... ...+...|.+++|+||
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~----~~~~~~~~~~~-------~~~~~~~v~~l~~spd 103 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDD----PNKIVDKVQGL-------LVPMKFPIHHLALSCD 103 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCC----TTCEEECCCCE-------EECCSSCEEEEEECTT
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccC----cccccccCccc-------cccCCCcccEEEEcCC
Confidence 34578899999999999998887 888875432110 00000 00000000000 0125678999999999
Q ss_pred CCeEE----EEe-CCeEEEEECCCc--------e---EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 843 DSYVM----SAT-GGKISLFNMMTF--------K---VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 843 g~~la----~~~-dg~i~vwd~~~~--------~---~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
|++|+ +++ |+.|++||+.++ + .+..+.+|...|.+++|+|+++.+||+++.||+|++||+.++.
T Consensus 104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~ 183 (434)
T 2oit_A 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183 (434)
T ss_dssp SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence 99999 566 789999998765 2 2455667899999999999548999999999999999999987
Q ss_pred eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCC-CCCCCccEEEEcCCCCEEEEEe--c
Q 001190 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG-KTPTGDTRVQFNADQVRMLVVH--E 983 (1128)
Q Consensus 907 ~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~d~~~l~~~~--d 983 (1128)
......+|...|.+++|+|+|++|++|+.||.|++||+. ++....+..+.... .....+.+++|++++.++++.. +
T Consensus 184 ~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 184 KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 777777899999999999999999999999999999998 44333222211110 1113788999999998887643 3
Q ss_pred C------eEEEEecCCcccc-----cccccC----CCCCCCeEEEEEeeCCCEEEEEec-CCcEEEEecCCC--ceE-EE
Q 001190 984 T------QLAIYDASKMERI-----RQWTPQ----DALSAPISCAVYSCNSQLVFATFC-DGNIGVFDADTL--RLR-CY 1044 (1128)
Q Consensus 984 ~------~i~v~d~~~~~~~-----~~~~~~----~~h~~~v~~l~~s~dg~~l~t~~~-dg~i~vwd~~~~--~~~-~~ 1044 (1128)
| .+++|++.+.+.. ..+... .....+-..+.+-+|.+++++++. .+.|.|...... ... ..
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~ 342 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL 342 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence 2 3899999865321 111110 011222334444478888777664 444666664321 111 11
Q ss_pred eCCCCCCCCc-ccCCCCccceEEEEEecC--------------CCCEEEEEECCCcEEEEcCCC
Q 001190 1045 IAPSTYLSPS-VLNGSQTVYPLVVAAHPL--------------EPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1045 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~--------------~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
.. ...-... ........+++++++.-. -...|..-+.||.+..|.+-.
T Consensus 343 ~~-d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 343 LE-DSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EC-GGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred cc-ccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 11 1110000 001123445555555321 125688999999999998775
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=8.6e-20 Score=220.12 Aligned_cols=270 Identities=11% Similarity=0.054 Sum_probs=195.3
Q ss_pred CCcEEEEEEeCCCCcEEEEeec-cCeEEEEEccCCceecccccccccccccCccccceeccCCC-cceEEEEEccCCCEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSS-NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYV 421 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l 421 (1128)
..+|++++|+|||++ ||.++. ||++.||++.+++... +..|. ..|.+++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 447999999999994 565555 9999999987665432 44444 68999999999 777
Q ss_pred EEEeC---CCeEEEEEccC--CCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCC
Q 001190 422 GVAFT---KHLIQLYSYAG--SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1128)
Q Consensus 422 as~~~---d~~i~vwd~~~--~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~ 495 (1128)
++++. +....+|.+.. ...... +..+. .+...+|+|||+.+++++++.|+.+ +|| .+|+...... +..
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~~---l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~-~~~ 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQR---LEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELAR-LPG 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCEE---CTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEE-ESS
T ss_pred EEeccCCCCcceEEEEEeccCCCcccc---ccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeec-CCC
Confidence 77765 45567766654 222222 22222 3446799999987567777666555 999 6665544443 333
Q ss_pred CeEEEeccCCCCccEEEEEecc----CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 496 PVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
.+++|+| ||++|++++.+ +.|++||+++++.. .+..+...+..++|||||+.|+++.. ++...|++||+
T Consensus 153 --~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 6777866 78899988877 78999998876654 56677788999999999999995432 23348999999
Q ss_pred CCCceeeEeccccCCceeEEE--------EeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCE
Q 001190 572 SEGTIKRTYAGFRKKSNGVVQ--------FDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 643 (1128)
.+++.. .+.++.. .+..++ |+|||..+++++.+|.+++|++ ++..... ...+.+++|+ ++++
T Consensus 226 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----~~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 226 RDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----QGNHGRVVLW-RGKL 295 (582)
T ss_dssp TTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----SSEEEEEEEE-TTEE
T ss_pred CCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----CCceEEEEec-CCEE
Confidence 999887 6666554 555566 9999988888999999999999 6654411 2357899999 9999
Q ss_pred EEEEEcCCc---EEEEEc
Q 001190 644 LAVTTADNG---FKILAN 658 (1128)
Q Consensus 644 l~~~~~dg~---i~iw~~ 658 (1128)
+++++.+.+ +.+|+.
T Consensus 296 l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 296 VTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEEEETTEEEEEEEETT
T ss_pred EEEEcCCCCCCeEEEEcC
Confidence 988887754 555544
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=4.2e-19 Score=203.43 Aligned_cols=259 Identities=11% Similarity=0.075 Sum_probs=176.7
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE-
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG- 422 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 422 (1128)
...++.+++++++. ++++|+.++ |+||+...-..... ...+... ...........|.+.|.+++|+|+|++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNK---PGDDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCC---TTCCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcc---cccCccc-ccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 44689999999998 678888787 89988643211100 0000000 00001111234677899999999999999
Q ss_pred ---EEeCCCeEEEEEccCC--------CcceeceeecccccceeEEEEecC-CCeEEEEEecCCCeEEEEe-cCCCeEEE
Q 001190 423 ---VAFTKHLIQLYSYAGS--------NDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1128)
Q Consensus 423 ---s~~~d~~i~vwd~~~~--------~~~~~~~~~~~h~~~v~~l~fs~d-~~~~~l~s~s~d~~i~vWd-~~g~~~~~ 489 (1128)
+|+.|+.|+|||+.++ +.+.....+.+|...|++++|+|+ +. +|++++.||+|++|| .++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999875 333334457789999999999998 66 899999999999999 77777777
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC-------CCeEEEEEEcCCCCeEEEeeecc--
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSK-- 560 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------~~~i~~~~~s~~g~~l~~~~~~~-- 560 (1128)
..+|...|.+++|++ +|++|++|+.||.|++||++ +.....+..+ ...+.+++|++++.++++.....
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 778999999999987 57899999999999999987 4444444332 23899999999988887655421
Q ss_pred -CCCceEEEEeCCCCce-----eeEec-------cccCCceeEEEEeCCCCEEEEEE-CCCcEEEEEC
Q 001190 561 -DGDSFLVEWNESEGTI-----KRTYA-------GFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDM 614 (1128)
Q Consensus 561 -~~~~~i~~wd~~~~~~-----~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~ 614 (1128)
.....+++|++...+. ...+. +... ....+..-++.+.+++++ ..+.|.+...
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 1123489999986521 11111 1111 111233336667777765 3444555554
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=3.3e-19 Score=221.25 Aligned_cols=287 Identities=8% Similarity=0.034 Sum_probs=190.1
Q ss_pred EEEEEEecCcceEEEeec---------cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEE
Q 001190 767 VVRLLYTNSAVGLLALGS---------NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 837 (1128)
Q Consensus 767 i~~l~~s~~g~~l~~~~~---------dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 837 (1128)
+.+++|+|||++|++++. ++.+++||+.. +..+.. .. ....+..+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~----------------------g~~~~~--~~--l~~~~~~~ 115 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN----------------------GEFVRG--NE--LPRPIQYL 115 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----------------------TEECCS--SC--CCSSBCCE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC----------------------Cccccc--ee--cCcccccc
Confidence 567888999998888776 57788886543 322100 00 12457889
Q ss_pred EeccCCCeEEEEeCCeEEEEECCCceEEEEe-eCCCCC-----------------eeEEEEcCCCCCEEEEEeCCC----
Q 001190 838 ALSKNDSYVMSATGGKISLFNMMTFKVMTTF-MSPPPA-----------------STFLAFHPQDNNIIAIGTEDS---- 895 (1128)
Q Consensus 838 ~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~-~~~~~~-----------------v~~l~~s~~d~~~lasg~~dg---- 895 (1128)
+|||||+.||++.++.|++|++.+++..... .++... ..+++||| ||+.||+++.|.
T Consensus 116 ~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 116 CWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIP 194 (719)
T ss_dssp EECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSC
T ss_pred eECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCc
Confidence 9999999999999999999999988775433 222221 25899999 999999987652
Q ss_pred ------------------------------cEEEEecccceee--------ecccccccCeeEEEEcCCCCEEEEEcCC-
Q 001190 896 ------------------------------TIHIYNVRVDEVK--------SKLKGHQKRITGLAFSTSLNILVSSGAD- 936 (1128)
Q Consensus 896 ------------------------------~v~iwd~~~~~~~--------~~l~~h~~~V~~l~~s~d~~~l~s~~~D- 936 (1128)
.|++||+.+++.. ..+.+|...+..++||||++++++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~ 274 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRV 274 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESS
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccc
Confidence 7899999988753 2345788899999999998877774432
Q ss_pred ---CcEEEEE----CCCCcccceeEEeecCCCCCCCcc-----EEEEcCCCCEEEE--Ee-cC--eEEEEecCCcccccc
Q 001190 937 ---AQLCVWS----IDTWEKRKSVTIHIPAGKTPTGDT-----RVQFNADQVRMLV--VH-ET--QLAIYDASKMERIRQ 999 (1128)
Q Consensus 937 ---g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~v~-----~v~~s~d~~~l~~--~~-d~--~i~v~d~~~~~~~~~ 999 (1128)
..|.+|| +.+++........ ...+. ..+. .++|+|||+.++. +. ++ .|.+|++.+++ ...
T Consensus 275 ~~~~~l~~~d~~~~~~~g~~~~~~~~~-~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~ 351 (719)
T 1z68_A 275 QNVSVLSICDFREDWQTWDCPKTQEHI-EESRT-GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQ 351 (719)
T ss_dssp TTEEEEEEEEECSSSSSEECCGGGEEE-EECSS-SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEE
T ss_pred cCeEEEEEEcccCCCCCCceEEEEecc-cccCC-ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEe
Confidence 2488899 7777655433200 01111 3333 7899999997665 32 33 57778877665 333
Q ss_pred cccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCC--Cce-EEEeCCCCCCCCcccCCCCccceEEEEEec
Q 001190 1000 WTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADT--LRL-RCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1071 (1128)
Q Consensus 1000 ~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1071 (1128)
+..+ ...+..+.++ |++.|+..+.+ +.+++|.+.. +.. ...+... . ..+...+..+.|+|
T Consensus 352 lt~~---~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~------~--~~~~~~~~~~~~s~ 419 (719)
T 1z68_A 352 ITSG---KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH------L--RKERCQYYTASFSD 419 (719)
T ss_dssp CSCS---SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT------T--TTTTBCBEEEEECG
T ss_pred cccC---ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc------c--CCCCCceEEEEECC
Confidence 3322 5668888888 88888776654 7889998764 421 2222200 0 01333456789999
Q ss_pred CCCCEEEEEECC--CcEEEEcCCCCC
Q 001190 1072 LEPNQFAIGLTD--GSVKVMEPSESE 1095 (1128)
Q Consensus 1072 ~~~~~l~s~~~d--g~i~iWd~~~~~ 1095 (1128)
+...++++++.+ ..+.+||+.+++
T Consensus 420 dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 420 YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 533344455555 468899988765
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=3e-18 Score=191.85 Aligned_cols=269 Identities=14% Similarity=0.119 Sum_probs=186.6
Q ss_pred cccCCCCCcce--EEeecCCCcEEEEEEeCCCCcEEEEeec--cCeEEEEEccCCceecccccccccccccCccccceec
Q 001190 327 TWSLDDLPRTV--AVSLHQGSTVISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1128)
Q Consensus 327 ~~~~~~~~~~~--~~~~~h~~~V~~v~fspdg~~lla~gs~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1128)
+|.++...... .....+...+..++|+|||+ +++++.. ++.|.+|++.+++.... ..+
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-----------------~~~ 81 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-----------------NTV 81 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------------EEE
T ss_pred EEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------------eee
Confidence 55555433333 33455778889999999999 7666543 78999999977663211 113
Q ss_pred cCCCcceEEEEEccCCCEEEEEe-CCCeEEEEEccCCCcceeceeecc---------cccceeEEEEecCCCeEEEEEec
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDA---------HVGAVNDLAFAYPNKLLCVVTCG 472 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~-~d~~i~vwd~~~~~~~~~~~~~~~---------h~~~v~~l~fs~d~~~~~l~s~s 472 (1128)
..+...+..++|+|||++|++++ .++.|.+|++.....+.....+.. +...+.+++|+|||+ ++++..
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~ 159 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDL 159 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEET
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeC
Confidence 44677899999999999999888 689999999964333332222221 123488999999999 788888
Q ss_pred CCCeEEEEe-c-CCCeEE--EecCC-CCCeEEEeccCCCCccEEEE-EeccCcEEEEecCCCCcee----eecCCC----
Q 001190 473 DDKLIKVWE-L-SGRKLF--NFEGH-EAPVYSICPHHKENIQFIFS-TAIDGKIKAWLYDTMGSRV----DYDAPG---- 538 (1128)
Q Consensus 473 ~d~~i~vWd-~-~g~~~~--~~~~h-~~~v~~~~~~~~~~~~~l~s-~~~dg~i~~wd~~~~~~~~----~~~~~~---- 538 (1128)
.++.|.+|| . +|+... .+..+ ...+..++|++ +|+++++ ...++.|.+|+++...... .+....
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP--DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC--CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 899999999 5 454332 22222 33577889976 6675555 5678999999987522221 122111
Q ss_pred --CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC---ceeeEeccccCCceeEEEEeCCCCEEEEEEC-CCcEEEE
Q 001190 539 --HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFW 612 (1128)
Q Consensus 539 --~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg~i~iw 612 (1128)
..+..++|+|||++|+++.. .++.|.+|++... +.+..+..+.. .+..++|+|++++|++++. ++.|.+|
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 45889999999998866553 4789999998732 44555554433 5778999999999988875 4899999
Q ss_pred --ECCCCeeeE
Q 001190 613 --DMDNVNILT 621 (1128)
Q Consensus 613 --d~~~~~~~~ 621 (1128)
|.+++++..
T Consensus 314 ~~d~~tg~l~~ 324 (347)
T 3hfq_A 314 ARDLTSGKLSL 324 (347)
T ss_dssp EECTTTCCEEE
T ss_pred EEeCCCCeEEe
Confidence 555676553
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=1.1e-18 Score=210.49 Aligned_cols=235 Identities=13% Similarity=0.165 Sum_probs=177.0
Q ss_pred CcceEEEEEccCCCEEEEEeC-CCeEEEEEccCCCcceeceeecccc-cceeEEEEecCCCeEEEEEecC---CCeEEEE
Q 001190 406 PISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGD---DKLIKVW 480 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~fs~d~~~~~l~s~s~---d~~i~vW 480 (1128)
..+|.+++|+|||++||+++. ||+++||++++++..+ +..|. ..+..++|+|| + ++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~----lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK----LNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE----CCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe----eecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 558999999999999999887 9999999998776443 44555 68999999999 5 6776664 5556666
Q ss_pred e--c--CCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEe
Q 001190 481 E--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 481 d--~--~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
. . .|... .+..+. .+...+|++++++..+++++.++ +.+||+++++.......+. .+++|||||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5 4 56555 443332 24456777766655555555554 5599998776554443333 789999999999987
Q ss_pred eeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC--cEEEEECCCCeeeEEEecCCCCCCcce
Q 001190 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1128)
+.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+. ++...+..
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~--~~~~~~~~ 242 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE--LPSKDFSS 242 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC--CSCSHHHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc--CCCcChhh
Confidence 764333478999999988765 5566554 678899999999999888888 8999999998877 443 33345777
Q ss_pred EE--------EcCCCCEEEEEEcCCcEEEEEc
Q 001190 635 LR--------FSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 635 v~--------~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
++ |+|||.++++++.++.+++|++
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 77 9999999999999999999987
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=1.1e-17 Score=207.01 Aligned_cols=273 Identities=12% Similarity=0.081 Sum_probs=184.3
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCc-----ceEEEEEccCCCE
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI-----SVSRVAWSPDGNY 420 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~~ 420 (1128)
...+++|+|||+ +++++ |++|++||+.+|+.... +.+|.. ....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence 466899999998 77775 99999999999886431 344432 3345899999999
Q ss_pred EEEEeCC---------CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE-
Q 001190 421 VGVAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN- 489 (1128)
Q Consensus 421 las~~~d---------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~- 489 (1128)
|+.++.+ +.+.+||+.+++... +..|.+.+...+|||||+ .||.+. |+.|++|| .+|...+.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9999876 566799999987543 667888999999999999 566664 78999999 56654432
Q ss_pred ecCCCCCe-----------------EEEeccCCCCccEEEEEeccCc-EEEEecCCCCceeeecCCCCeEEEEEEcCCCC
Q 001190 490 FEGHEAPV-----------------YSICPHHKENIQFIFSTAIDGK-IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1128)
Q Consensus 490 ~~~h~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~ 551 (1128)
..++...+ ..+.|+| ||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECC--CCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 22333323 2477866 7788988876654 8888764322110 1334567777777775
Q ss_pred eEEEeeeccCCCceEEEEeCCC---Cc--eeeEecc------ccCCceeEEEEeCCCCEEEEEEC----CCcEEEEECCC
Q 001190 552 RLFSCGTSKDGDSFLVEWNESE---GT--IKRTYAG------FRKKSNGVVQFDTTQNHFLAVGE----DSQIKFWDMDN 616 (1128)
Q Consensus 552 ~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~------~~~~~v~~~~~~~~~~~l~~~s~----dg~i~iwd~~~ 616 (1128)
.. ....|++||+.+ ++ ....+.. +. ..+..++|+|||+.++.... +..|++||+.+
T Consensus 224 ~~--------~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 224 VN--------PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGD-HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp CC--------CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSC-EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred cC--------CeeEEEEEECCCCCCCCcceEEEecCCccCCCCC-eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 31 244699999998 73 2223332 33 36888999999987666542 34799999998
Q ss_pred Ce----ee--EEEecCCCCCCc-----ceEEEcCCCCEEE-EEEc-CC--cEEEEEcccC
Q 001190 617 VN----IL--TSTDAEGGLPNL-----PRLRFSKEGNLLA-VTTA-DN--GFKILANAIG 661 (1128)
Q Consensus 617 ~~----~~--~~~~~~~~~~~v-----~~v~~sp~~~~l~-~~~~-dg--~i~iw~~~~~ 661 (1128)
++ +. ..+...++...| ..++|+|||+.++ ..+. +| .|++|+..++
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 87 21 111001222223 3789999999887 6653 44 4666766543
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=1.4e-17 Score=206.32 Aligned_cols=381 Identities=9% Similarity=0.002 Sum_probs=240.6
Q ss_pred EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCc--e--eEEEEeCCCCEEEEEECC---------C
Q 001190 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS--N--GVVQFDTTQNHFLAVGED---------S 607 (1128)
Q Consensus 541 i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--v--~~~~~~~~~~~l~~~s~d---------g 607 (1128)
..++.|+|||+++++. ++.|++||+.+++....+.++.... + ..+.|+|||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999888774 6789999999999888888776422 2 237899999999998875 6
Q ss_pred cEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeec
Q 001190 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1128)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 687 (1128)
.+++||+.+++.... . .+...+..++|||||+.||.+. ++.|++|++.++....-...+...
T Consensus 93 ~~~~~d~~~~~~~~l-~--~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~-------------- 154 (740)
T 4a5s_A 93 SYDIYDLNKRQLITE-E--RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKED-------------- 154 (740)
T ss_dssp EEEEEETTTTEECCS-S--CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTT--------------
T ss_pred EEEEEECCCCcEEEc-c--cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcc--------------
Confidence 678999999986542 2 2334689999999999999885 689999998776321111000000
Q ss_pred ccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccE
Q 001190 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (1128)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i 767 (1128)
.+ ..+. .-.+|.- ...+..
T Consensus 155 ---~~-------------------------------------~~g~---~~~v~~e------------------e~~~~~ 173 (740)
T 4a5s_A 155 ---II-------------------------------------YNGI---TDWVYEE------------------EVFSAY 173 (740)
T ss_dssp ---TE-------------------------------------EESB---CCHHHHH------------------HTSSSS
T ss_pred ---ce-------------------------------------ecCc---ccccccc------------------hhcCCC
Confidence 00 0000 0000000 001223
Q ss_pred EEEEEecCcceEEEeecc-ceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeE
Q 001190 768 VRLLYTNSAVGLLALGSN-GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 846 (1128)
Q Consensus 768 ~~l~~s~~g~~l~~~~~d-g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 846 (1128)
..+.|||||+.|+.+..| +.+.+|++..... .. .+...+..+.+.+.|...
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------------~~---------~~~~~~~~~~yp~~G~~~ 225 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------------ES---------LQYPKTVRVPYPKAGAVN 225 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------------TT---------CSSCEEEEEECCBTTSCC
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecC-------------------CC---------CCCCcceeecCCCCcCcC
Confidence 468899999999988765 4488887542110 00 033456677777776431
Q ss_pred EEEeCCeEEEEECCC---ce--EEEEee------CCCCCeeEEEEcCCCCCEEEEEeC----CCcEEEEecccce----e
Q 001190 847 MSATGGKISLFNMMT---FK--VMTTFM------SPPPASTFLAFHPQDNNIIAIGTE----DSTIHIYNVRVDE----V 907 (1128)
Q Consensus 847 a~~~dg~i~vwd~~~---~~--~~~~~~------~~~~~v~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~----~ 907 (1128)
...+|++||+.+ ++ ....+. +|...+..++|+| |+++++.... +..|++||+.+++ +
T Consensus 226 ---~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 226 ---PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp ---CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred ---CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 123689999998 73 223333 3677799999999 8887665532 3479999999887 3
Q ss_pred eec--c--cccccCee-----EEEEcCCCCEEE-EEcC-C--CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC
Q 001190 908 KSK--L--KGHQKRIT-----GLAFSTSLNILV-SSGA-D--AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1128)
Q Consensus 908 ~~~--l--~~h~~~V~-----~l~~s~d~~~l~-s~~~-D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 974 (1128)
... + .+|...|. .++|+|||+.|+ ..+. + ..|.+||+.+++... +..+. -.+..+. .+|
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-----lT~g~--~~v~~~~-~~d 373 (740)
T 4a5s_A 302 LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-----ITKGT--WEVIGIE-ALT 373 (740)
T ss_dssp CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-----SCCSS--SCEEEEE-EEC
T ss_pred eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-----cccCC--EEEEEEE-EEe
Confidence 322 2 44655554 789999999877 6653 3 468888988765422 11111 3344433 244
Q ss_pred CCEEEEEe-c-----C--eEEEEecCCcccccccccC-CCCCCCeEEEEEeeCCCEEEEEecC---CcEEEEecCCCceE
Q 001190 975 QVRMLVVH-E-----T--QLAIYDASKMERIRQWTPQ-DALSAPISCAVYSCNSQLVFATFCD---GNIGVFDADTLRLR 1042 (1128)
Q Consensus 975 ~~~l~~~~-d-----~--~i~v~d~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~t~~~d---g~i~vwd~~~~~~~ 1042 (1128)
++.++... . + .|+..++..+.....+... .........+.|||||++++..... ..+.+++..+++.+
T Consensus 374 ~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~ 453 (740)
T 4a5s_A 374 SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGL 453 (740)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 66666543 2 2 3444555444332223221 1114568899999999987765433 36889999888766
Q ss_pred EEeC
Q 001190 1043 CYIA 1046 (1128)
Q Consensus 1043 ~~~~ 1046 (1128)
..+.
T Consensus 454 ~~l~ 457 (740)
T 4a5s_A 454 RVLE 457 (740)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5544
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=9.4e-18 Score=191.22 Aligned_cols=295 Identities=11% Similarity=-0.010 Sum_probs=194.6
Q ss_pred EeecCCCcEEE-----EEEeCCCCcEEEEeeccC--eEEEEEccCCceecccccccccccccCccccceeccCCCcceEE
Q 001190 339 VSLHQGSTVIS-----MDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1128)
Q Consensus 339 ~~~~h~~~V~~-----v~fspdg~~lla~gs~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 411 (1128)
....|...+.. .+|||||+++++++..++ .|.+||+.+++... +..+|...+..
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~~ 85 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTFG 85 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSSS
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCccc
Confidence 33346656666 899999996544443367 48888888877543 24456666667
Q ss_pred EEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEE--EecCCCeEEEEE-------------------
Q 001190 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVT------------------- 470 (1128)
Q Consensus 412 l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~--fs~d~~~~~l~s------------------- 470 (1128)
++|||||++|+.++.++.|++||+.+++.... +..+...+.... +++|++ +++.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVV---YQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEE---EECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHHH
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceee---eechhhcccccceeECCCCC--eeccccccCcccccccccchhhh
Confidence 88999999999999999999999999875542 334555454444 489998 4542
Q ss_pred ---ecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc------CcEEEEecCCCCceeeecCCC-C
Q 001190 471 ---CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPG-H 539 (1128)
Q Consensus 471 ---~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~-~ 539 (1128)
...+..|.+|| .+|+ ...+..+...+..++|+|. +|+.|+....+ ..|.++|.+............ .
T Consensus 161 ~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 238 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGE 238 (388)
T ss_dssp HGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTE
T ss_pred hhccCCcceEEEEECCCCc-eEEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCc
Confidence 23457899999 5664 4555556777889998661 45677766653 367777776544333322222 3
Q ss_pred eEEEEEEcCCCCeEEEeeeccC-CCceEEEEeCCCCceee--EeccccC--CceeEEEEeCCCCEEEEE---------EC
Q 001190 540 WCTTMLYSADGSRLFSCGTSKD-GDSFLVEWNESEGTIKR--TYAGFRK--KSNGVVQFDTTQNHFLAV---------GE 605 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~~-~~~~i~~wd~~~~~~~~--~~~~~~~--~~v~~~~~~~~~~~l~~~---------s~ 605 (1128)
.+..++|+|||+.|+..+.... .+..|++||+.+++... .+.++.. .......|+|||+.|+.. ..
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 318 (388)
T 3pe7_A 239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN 318 (388)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CC
T ss_pred ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC
Confidence 6788999999998877654221 12359999999987433 3333100 001224799999988764 45
Q ss_pred CCcEEEEECCCCeeeEEEecCCCCC--------CcceEEEcCCCCEEEEEEc-CCcEEEEEcc
Q 001190 606 DSQIKFWDMDNVNILTSTDAEGGLP--------NLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1128)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~ 659 (1128)
+..|++||+.+++............ .+..++|+|||+.|+..+. +|...+|.++
T Consensus 319 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 319 DPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 6789999999987654443322110 3678899999998887764 6777777654
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=2.3e-17 Score=185.81 Aligned_cols=249 Identities=11% Similarity=0.122 Sum_probs=167.5
Q ss_pred CCCCeeEEEeccCCCeEEEEeC-----CeEEEEECCC--ceE--EEEeeCCCCCeeEEEEcCCCCCEEEEE-eCCCcEEE
Q 001190 830 LEEAVPCIALSKNDSYVMSATG-----GKISLFNMMT--FKV--MTTFMSPPPASTFLAFHPQDNNIIAIG-TEDSTIHI 899 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~d-----g~i~vwd~~~--~~~--~~~~~~~~~~v~~l~~s~~d~~~lasg-~~dg~v~i 899 (1128)
+...+..++|+|||++|++++. +.|.+|++.. ++. +.....+......+++ ++++|+++ ..++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 3455677999999999988874 6899998865 443 3344445556777777 45555554 47899999
Q ss_pred Eecccceeeeccc--------------ccccCeeEEEEcCCCCEEEEE-cCCCcEEEEECCCCcc------ccee-EEee
Q 001190 900 YNVRVDEVKSKLK--------------GHQKRITGLAFSTSLNILVSS-GADAQLCVWSIDTWEK------RKSV-TIHI 957 (1128)
Q Consensus 900 wd~~~~~~~~~l~--------------~h~~~V~~l~~s~d~~~l~s~-~~Dg~i~iwd~~~~~~------~~~~-~~~~ 957 (1128)
|++.....+..+. .+...+.+++|+|||++|+++ ..++.|.+|++..... +... ....
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 9997543332221 122345789999999966554 4588999999886542 2111 0001
Q ss_pred cCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCccc--ccccccCCCCCCCeEEEEEeeCCCEEEEEecC--CcE
Q 001190 958 PAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFATFCD--GNI 1031 (1128)
Q Consensus 958 ~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d--g~i 1031 (1128)
........+..++|+|||++++++. ++.|.+|++.++.. +..+.....+......++|+|||++|+++..+ +.|
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 1111125678899999999888765 78999999987644 22232222234567899999999999877654 899
Q ss_pred EEEecC--CCce--EEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEE-CCCcEEEEcCC--CCC
Q 001190 1032 GVFDAD--TLRL--RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEPS--ESE 1095 (1128)
Q Consensus 1032 ~vwd~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~-~dg~i~iWd~~--~~~ 1095 (1128)
.||++. +++. +..+. . ...+.+++|+| |+++|++++ .++.|.+|++. +++
T Consensus 285 ~v~~~~~~~g~~~~~~~~~------------~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 285 AIFKVDETNGTLTKVGYQL------------T-GIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp EEEEECTTTCCEEEEEEEE------------C-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEEEEcCCCCcEEEeeEec------------C-CCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCc
Confidence 999995 5553 33333 1 23456899999 688777776 77999996554 544
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=5.9e-18 Score=189.76 Aligned_cols=275 Identities=11% Similarity=0.056 Sum_probs=187.5
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceecc-CCCcceEEEEEccCCCEEEE-EeC
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGV-AFT 426 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las-~~~ 426 (1128)
.++++++++ ++++++.++.|.+||+.+++.+.. +. +....+..++|+|||+++++ +..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 457888887 788889999999999998876542 22 12235789999999997654 456
Q ss_pred CCeEEEEEccCCCcceeceeeccc-----ccceeEEEEecCCCeEEEEEecCC------------CeEEEEe-cCCCe--
Q 001190 427 KHLIQLYSYAGSNDLRQHSQIDAH-----VGAVNDLAFAYPNKLLCVVTCGDD------------KLIKVWE-LSGRK-- 486 (1128)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~~~~h-----~~~v~~l~fs~d~~~~~l~s~s~d------------~~i~vWd-~~g~~-- 486 (1128)
++.|.+||+.+++.+.... + .+ ...+.+++|+|||+ ++++++.+ +.|.+|| .+++.
T Consensus 64 ~~~i~~~d~~t~~~~~~~~-~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFHAN-L-SSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp TTEEEEEETTTTEEEEEEE-S-CCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred CCcEEEEeCCCCcEEEEEE-c-ccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 8999999999987655321 1 22 33488999999999 56666654 8999999 66433
Q ss_pred -EEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC---------------------C---eE
Q 001190 487 -LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------------------H---WC 541 (1128)
Q Consensus 487 -~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---------------------~---~i 541 (1128)
+..+.. ...+.+++|++ +++ +++++ +.|.+||+.+++....+.... . ..
T Consensus 140 ~~~~~~~-~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 140 PVRTFPM-PRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp CSEEEEC-CSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred eeeeccC-CCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 334443 33578888876 556 55554 449999998877665554332 0 34
Q ss_pred EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeC-CCCEEEEEECCCcEEEEECCCCeee
Q 001190 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
..+++++++........ ....+..++..+++....-.......+..++++| ++++++++ ++.|++||+.+++.+
T Consensus 214 ~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~ 288 (349)
T 1jmx_B 214 YTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI 288 (349)
T ss_dssp EEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE
T ss_pred eeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE
Confidence 55667766532211110 0112233555555432211111223677899999 99999888 889999999999988
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 621 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
..+.... .+.+++|+|++++|++++.++.|.+||..++
T Consensus 289 ~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 289 KAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 8876432 4689999999999988888999999999876
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=7.6e-17 Score=181.50 Aligned_cols=271 Identities=14% Similarity=0.147 Sum_probs=184.7
Q ss_pred EEEEee----ccCeEEEEEcc--CCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCC----C
Q 001190 359 LLLVGS----SNGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----H 428 (1128)
Q Consensus 359 lla~gs----~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~ 428 (1128)
++++|+ .++.|.+|+++ +|+.... ... +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~-----------------~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL-----------------SDA--EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE-----------------EEE--ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe-----------------ecc--cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 556664 35689999875 4443211 112 66788899999999999999876 7
Q ss_pred eEEEEEccCC-CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe------cC--------
Q 001190 429 LIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF------EG-------- 492 (1128)
Q Consensus 429 ~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~------~~-------- 492 (1128)
.|.+|+++.. ..+........+......+++ +++. ++++...++.|.+|+ .....+..+ .+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999999863 223333334445566777888 7874 445555789999999 433322111 11
Q ss_pred CCCCeEEEeccCCCCccEEEEEe-ccCcEEEEecCCCCc------e-------eeecCCCCeEEEEEEcCCCCeEEEeee
Q 001190 493 HEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYDTMGS------R-------VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~------~-------~~~~~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
+...+.+++|+| +|+++++++ .++.|++|+++.... . .........+..++|+|||++++++..
T Consensus 153 ~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 123357889976 667665554 588999999876553 1 122334456789999999998887763
Q ss_pred ccCCCceEEEEeCCCCce--eeEecccc--CCceeEEEEeCCCCEEEEEECC--CcEEEEECC--CCe--eeEEEecCCC
Q 001190 559 SKDGDSFLVEWNESEGTI--KRTYAGFR--KKSNGVVQFDTTQNHFLAVGED--SQIKFWDMD--NVN--ILTSTDAEGG 628 (1128)
Q Consensus 559 ~~~~~~~i~~wd~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~d--g~i~iwd~~--~~~--~~~~~~~~~~ 628 (1128)
.++.|.+|++.+++. +..+.... ......++|+|+|++|+++..+ +.|.+|++. +++ .+..+.. +
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 478899999987754 23332221 1235689999999999777654 899999985 454 3444443 2
Q ss_pred CCCcceEEEcCCCCEEEEEE-cCCcEEEEEcc
Q 001190 629 LPNLPRLRFSKEGNLLAVTT-ADNGFKILANA 659 (1128)
Q Consensus 629 ~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~ 659 (1128)
..+..++|+|||++|++++ .++.|.+|+++
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2578999999999999888 57899997665
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=4.4e-18 Score=190.76 Aligned_cols=244 Identities=10% Similarity=0.042 Sum_probs=181.1
Q ss_pred EEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEE
Q 001190 769 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 848 (1128)
Q Consensus 769 ~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 848 (1128)
++++++++..+++++.++.|.+||... ++.... +.. .....+..++|+|||+++++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~-~~~-~~~~~~~~~~~s~dg~~~~v 59 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVAS----------------------DTVYKS-CVM-PDKFGPGTAMMAPDNRTAYV 59 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTT----------------------TEEEEE-EEC-SSCCSSCEEEECTTSSEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCC----------------------CcEEEE-Eec-CCCCCCceeEECCCCCEEEE
Confidence 456778888899999999999998643 221111 110 01125778999999997765
Q ss_pred Ee--CCeEEEEECCCceEEEEeeCCC------CCeeEEEEcCCCCCEEEEEeCC------------CcEEEEecccceee
Q 001190 849 AT--GGKISLFNMMTFKVMTTFMSPP------PASTFLAFHPQDNNIIAIGTED------------STIHIYNVRVDEVK 908 (1128)
Q Consensus 849 ~~--dg~i~vwd~~~~~~~~~~~~~~------~~v~~l~~s~~d~~~lasg~~d------------g~v~iwd~~~~~~~ 908 (1128)
+. ++.|.+||+.+++.+..+..+. ..+.+++|+| ++++|++++.+ +.|.+||+.+++..
T Consensus 60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 54 6889999999999887776432 2378999999 89999888865 89999999986543
Q ss_pred e---cccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCC------------------------
Q 001190 909 S---KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGK------------------------ 961 (1128)
Q Consensus 909 ~---~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~------------------------ 961 (1128)
. .+. +...+.+++|+|||+ ++.++. .|.+||+.+++....+........
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY 214 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred ceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeee
Confidence 3 333 334688999999999 555544 499999998876543322110000
Q ss_pred --------------------------------------CCCCccEEEEcC-CCCEEEEEecCeEEEEecCCccccccccc
Q 001190 962 --------------------------------------TPTGDTRVQFNA-DQVRMLVVHETQLAIYDASKMERIRQWTP 1002 (1128)
Q Consensus 962 --------------------------------------~~~~v~~v~~s~-d~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 1002 (1128)
....+..++|+| ||++++++ ++.|.+||+.+++.+..+..
T Consensus 215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~ 293 (349)
T 1jmx_B 215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL 293 (349)
T ss_dssp EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC
T ss_pred eeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC
Confidence 001345678889 99999988 89999999999988777654
Q ss_pred CCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 1003 QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1003 ~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
...+.+++|+|||++|++++.++.|++||+++++.+..+.
T Consensus 294 ----~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 294 ----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp ----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred ----CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 3456799999999999998889999999999999888876
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=1.1e-17 Score=188.43 Aligned_cols=248 Identities=11% Similarity=0.096 Sum_probs=171.3
Q ss_pred CCeeEEEeccCCCeEEEEeCCeEEEEECC-CceEEEEeeC-CCCCeeEEEEcCCCCC--EEEEEe-------------CC
Q 001190 832 EAVPCIALSKNDSYVMSATGGKISLFNMM-TFKVMTTFMS-PPPASTFLAFHPQDNN--IIAIGT-------------ED 894 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~-~~~~~~~~~~-~~~~v~~l~~s~~d~~--~lasg~-------------~d 894 (1128)
..+..++|+|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| +++ +++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46788999999999988884499999997 7776543321 113466799999 888 455553 68
Q ss_pred CcEEEEecc-cceeeeccc----ccccCeeEEEEcCCCCEEEEEc-CCCcEEEEECC-CCcccceeEEeecCCCCCCCcc
Q 001190 895 STIHIYNVR-VDEVKSKLK----GHQKRITGLAFSTSLNILVSSG-ADAQLCVWSID-TWEKRKSVTIHIPAGKTPTGDT 967 (1128)
Q Consensus 895 g~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~~-~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 967 (1128)
|++.+|++. +++....+. .+...+.+++|+|||++|++++ .++.|++||+. +++........... ....+.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--~g~~p~ 196 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD--PGDHPR 196 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS--TTCCEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC--CCCCCC
Confidence 999999997 465544433 2456799999999999888765 46799999998 66643222222111 125688
Q ss_pred EEEEcCCCCEEEEEe--cCeEEEEecC--Ccccc------cccccC-CCCCC------CeEEEE-EeeCCCEEEEEecCC
Q 001190 968 RVQFNADQVRMLVVH--ETQLAIYDAS--KMERI------RQWTPQ-DALSA------PISCAV-YSCNSQLVFATFCDG 1029 (1128)
Q Consensus 968 ~v~~s~d~~~l~~~~--d~~i~v~d~~--~~~~~------~~~~~~-~~h~~------~v~~l~-~s~dg~~l~t~~~dg 1029 (1128)
.++|+|||++++++. ++.+.+|++. +++.. ..+... ..|.. .+..++ |||||++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 999999999988865 6789999865 45432 112111 11121 488999 999999998776433
Q ss_pred ------cEEEEecC-CCceEEE---eCCCCCCCCcccCCCCccceEEEEEecC--CCCEEEEEEC-CCcEEEEcCCCC
Q 001190 1030 ------NIGVFDAD-TLRLRCY---IAPSTYLSPSVLNGSQTVYPLVVAAHPL--EPNQFAIGLT-DGSVKVMEPSES 1094 (1128)
Q Consensus 1030 ------~i~vwd~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~l~s~~~-dg~i~iWd~~~~ 1094 (1128)
.|.+|++. +|+.... .. .+...+..++|+|. |+++|++++. +++|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~------------~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSP------------TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEE------------CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeee------------cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 6765431 21 11112345789994 5788888876 489999998765
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=4.5e-17 Score=183.28 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=173.5
Q ss_pred CCcceEEEEEccCCCEEEEEeCCCeEEEEEcc-CCCcceeceeecccccceeEEEEecCCCeEEEEEec-----------
Q 001190 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG----------- 472 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~~~d~~i~vwd~~-~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s----------- 472 (1128)
+...+..++|+|||++|++++.+ .|.+|++. +++..... ....+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-EeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 34468899999999999999888 99999997 77543311 11111 336679999999953455554
Q ss_pred --CCCeEEEEe-c-CCCeEEEec----CCCCCeEEEeccCCCCccEEEEEe-ccCcEEEEecC-CCCcee--eec--CCC
Q 001190 473 --DDKLIKVWE-L-SGRKLFNFE----GHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD-TMGSRV--DYD--APG 538 (1128)
Q Consensus 473 --~d~~i~vWd-~-~g~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~-~~~~~~--~~~--~~~ 538 (1128)
.++++.+|+ . +|+....+. .+...+.+++|++ +|++++++. .++.|++|+++ +++... .+. .++
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 689999999 4 576654443 2556789999976 667787765 46899999998 554332 232 235
Q ss_pred CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC--CCcee---eEecccc----C-C-------ceeEEE-EeCCCCEE
Q 001190 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIK---RTYAGFR----K-K-------SNGVVQ-FDTTQNHF 600 (1128)
Q Consensus 539 ~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~--~~~~~---~~~~~~~----~-~-------~v~~~~-~~~~~~~l 600 (1128)
..+..++|+|||++++++.. .++.|.+|++. +++.. ..+.... . . .+..++ |+|||++|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 67899999999999887763 36789998765 56543 1222111 1 1 367789 99999998
Q ss_pred EEEECCC------cEEEEECC-CCeeeEE---EecCCCCCCcceEEEcC---CCCEEEEEEcC-CcEEEEEcccC
Q 001190 601 LAVGEDS------QIKFWDMD-NVNILTS---TDAEGGLPNLPRLRFSK---EGNLLAVTTAD-NGFKILANAIG 661 (1128)
Q Consensus 601 ~~~s~dg------~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~sp---~~~~l~~~~~d-g~i~iw~~~~~ 661 (1128)
++++.+. .|.+|++. +++.... ..... ..+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 8776432 89999996 5665432 22222 2467899999 89999999864 89999998764
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=1.9e-17 Score=188.68 Aligned_cols=253 Identities=10% Similarity=0.005 Sum_probs=173.5
Q ss_pred ccCCCcceEE-----EEEccCCCEEEEEeC-CC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC
Q 001190 402 FKDVPISVSR-----VAWSPDGNYVGVAFT-KH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1128)
Q Consensus 402 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~ 473 (1128)
+..|...... .+|||||++||.++. ++ .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5556655555 899999999999987 66 48888998887554 2445666666789999999 7888888
Q ss_pred CCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe----------------------ccCcEEEEecCCCCc
Q 001190 474 DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA----------------------IDGKIKAWLYDTMGS 530 (1128)
Q Consensus 474 d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~~wd~~~~~~ 530 (1128)
++.|++|| .+++....+..+...+....+..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 89999999 7777776666666656555543355777776432 346799999987654
Q ss_pred eeeecCCCCeEEEEEEcC-CCCeEEEeeeccC--CCceEEEEeCCCCceeeEeccccC-CceeEEEEeCCCCEEEEEEC-
Q 001190 531 RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKD--GDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGE- 605 (1128)
Q Consensus 531 ~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~- 605 (1128)
. .+..+...+..+.|+| ||+.|+.+..... ....|.++|...++... +..+.. ..+...+|+|||+.|+..+.
T Consensus 181 ~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 T-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp E-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred E-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecC
Confidence 4 3444556789999999 9999988764211 14478888887665433 333332 24667899999998876553
Q ss_pred C----CcEEEEECCCCeeeEEEecCCCC---CCcceEEEcCCCCEEEEE---------EcCCcEEEEEcccC
Q 001190 606 D----SQIKFWDMDNVNILTSTDAEGGL---PNLPRLRFSKEGNLLAVT---------TADNGFKILANAIG 661 (1128)
Q Consensus 606 d----g~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~sp~~~~l~~~---------~~dg~i~iw~~~~~ 661 (1128)
+ +.|++||+.+++........+.. .....+.|+|||+.|+.. ..+..|++||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 2 23999999998754433322200 012345799999988754 34568889988765
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=8e-16 Score=171.83 Aligned_cols=312 Identities=9% Similarity=0.094 Sum_probs=208.0
Q ss_pred CccEEEEEe------ccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeec------cCCCceEEEEeCCCC
Q 001190 507 NIQFIFSTA------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEG 574 (1128)
Q Consensus 507 ~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~------~~~~~~i~~wd~~~~ 574 (1128)
+++++++.. .|+.|.+||..+++....+.....+ .++|+|||++++++... +..++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 456666653 4789999999888777666655444 89999999999987531 112567999999999
Q ss_pred ceeeEecccc-----CCceeEEEEeCCCCEEEEEEC--CCcEEEEECCCCeeeEE-EecCCCCCCcceEEEcCCC-CEEE
Q 001190 575 TIKRTYAGFR-----KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTS-TDAEGGLPNLPRLRFSKEG-NLLA 645 (1128)
Q Consensus 575 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~sp~~-~~l~ 645 (1128)
+.+.++.... ......++++|+|++|+++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9888876431 124566899999999999874 68999999999998877 65432 1335677765 6778
Q ss_pred EEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCC
Q 001190 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSM 725 (1128)
Q Consensus 646 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1128)
+.+.||.+.+|+.............
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~------------------------------------------------------- 192 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRS------------------------------------------------------- 192 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEEC-------------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeeccc-------------------------------------------------------
Confidence 8889999999987542121100000
Q ss_pred CCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCcee
Q 001190 726 DKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 805 (1128)
Q Consensus 726 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~ 805 (1128)
..+|+.. ... ..+.+++++..++..+.++.+.++|+...... .
T Consensus 193 ------------~~~~~~~-------------------~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~-----~ 235 (361)
T 2oiz_A 193 ------------KQMFSVK-------------------DDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK-----V 235 (361)
T ss_dssp ------------CCCSCTT-------------------TSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE-----E
T ss_pred ------------cceEcCC-------------------CCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCce-----e
Confidence 0001100 000 01112445555555566777777776422100 0
Q ss_pred eeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe------------CCeEEEEECCCceEEEEeeCCCC
Q 001190 806 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT------------GGKISLFNMMTFKVMTTFMSPPP 873 (1128)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~------------dg~i~vwd~~~~~~~~~~~~~~~ 873 (1128)
...|...........+ .......++|+||++.+.++. .+.|.+||+.+++.+.++..+.
T Consensus 236 ----~~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 236 ----DGPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp ----EEEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred ----cccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 0011111100000000 011222478999988777653 2379999999999999998776
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecccc--eeeecccccccCeeEEEEcCCCC
Q 001190 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD--EVKSKLKGHQKRITGLAFSTSLN 928 (1128)
Q Consensus 874 ~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~ 928 (1128)
+.+++|+| |+++|++++. ++|.+||..++ +.+.++..+......++++|+|+
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999 8889988886 99999999999 99988866777788999999986
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=1e-15 Score=170.98 Aligned_cols=294 Identities=9% Similarity=0.065 Sum_probs=197.0
Q ss_pred CCCcEEEEe-----eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeC---
Q 001190 355 SHQTLLLVG-----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT--- 426 (1128)
Q Consensus 355 dg~~lla~g-----s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~--- 426 (1128)
++++++++- ..|+.|.+||..+++.+.. +..+..+ .++|||||++|+++..
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~ 72 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHE 72 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEeccc
Confidence 555444432 2478999999998886542 3334444 8999999999999863
Q ss_pred -------CCeEEEEEccCCCcceeceeecc---cccceeEEEEecCCCeEEEEEec--CCCeEEEEe-cCCCeEEE-ecC
Q 001190 427 -------KHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKLFN-FEG 492 (1128)
Q Consensus 427 -------d~~i~vwd~~~~~~~~~~~~~~~---h~~~v~~l~fs~d~~~~~l~s~s--~d~~i~vWd-~~g~~~~~-~~~ 492 (1128)
++.|.+||..+++.+..+..... +......++|+|||+ +|+++. .+++|.+|| .+++.+.. +..
T Consensus 73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~ 150 (361)
T 2oiz_A 73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTAA 150 (361)
T ss_dssp TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence 56799999998877664432211 234578899999999 455544 368999999 88877776 542
Q ss_pred CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCcee-------eecCCCCeEEEEEEcCCCCeEEEeeeccCCCce
Q 001190 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-------DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1128)
Q Consensus 493 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-------~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 565 (1128)
.+ ...+.+.+.+ ...+++.+.||.+.+|+++...... .+.....+ ..+.+++++..++..+ .++.
T Consensus 151 -~~-~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~----~~~~ 222 (361)
T 2oiz_A 151 -AG-CWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVS----YYGN 222 (361)
T ss_dssp -TT-EEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEB----TTSE
T ss_pred -CC-cceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEe----CCCe
Confidence 22 2234444543 3678888999999999986533322 11111222 1333467777766665 3678
Q ss_pred EEEEeCCCCce--eeEecccc------C---CceeEEEEeCCCCEEEEEEC-----------CCcEEEEECCCCeeeEEE
Q 001190 566 LVEWNESEGTI--KRTYAGFR------K---KSNGVVQFDTTQNHFLAVGE-----------DSQIKFWDMDNVNILTST 623 (1128)
Q Consensus 566 i~~wd~~~~~~--~~~~~~~~------~---~~v~~~~~~~~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~~ 623 (1128)
+.++|+..... ...+.... . .....++|++++++++++.. .+.|.+||+.+++.+..+
T Consensus 223 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i 302 (361)
T 2oiz_A 223 VYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI 302 (361)
T ss_dssp EEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE
Confidence 99999875542 22221100 0 01223789999988887653 358999999999999998
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC--ccccccccCCccccccCcceeeeeecccc
Q 001190 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG--LRSLRAVENPPFEALRTPIESVALKVSAS 690 (1128)
Q Consensus 624 ~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 690 (1128)
..+. +.+++|+|||++|++++. +.|.+||..++ +.. ..+.. .......++++|+|+
T Consensus 303 ~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~-~~i~~-----~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 303 PGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL-RTIEG-----AAEASLQVQFHPVGG 360 (361)
T ss_dssp ECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE-EEETT-----SCSSEEEEEECCCSC
T ss_pred ecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee-EEecc-----CCCCcEEEEecCCCC
Confidence 8654 789999999999998887 99999999887 433 22211 112345688888875
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=2.3e-16 Score=180.23 Aligned_cols=283 Identities=10% Similarity=-0.034 Sum_probs=183.3
Q ss_pred EEEEEEeCCCCcEEEEeecc--CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 347 VISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
+.+++|||||++++++...+ ..|.+||+.+++.... ..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence 77889999999655554433 3688889887764321 22222233347899999999999
Q ss_pred eCCCeEEEEEccCCCcceeceeecccccceeE-------------------EEEecCCCeEEEEEe-----cCCCeEEEE
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-------------------LAFAYPNKLLCVVTC-----GDDKLIKVW 480 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~-------------------l~fs~d~~~~~l~s~-----s~d~~i~vW 480 (1128)
+.++.|.+||+.+++.... ...+...... ++|+|+++. ++.. ..+..|.+|
T Consensus 99 ~~~~~l~~~d~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQVI---YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEEE---EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEEE---EecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 9999999999998875432 2223332222 356777773 3332 456789999
Q ss_pred e-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc------CcEEEEecCCCCceeeecCC-CCeEEEEEEcCCCCe
Q 001190 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSR 552 (1128)
Q Consensus 481 d-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~-~~~i~~~~~s~~g~~ 552 (1128)
| .+++... +..+...+..+.|++. ++..|+..+.+ ..|.+|+++........... ...+..++|+|||++
T Consensus 174 d~~~g~~~~-~~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGELEV-IHQDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCEEE-EEEESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcEEe-eccCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 9 6665543 4456677888999762 34556555443 35888887654433322221 336888999999998
Q ss_pred EEEeeecc-CCCceEEEEeCCCCceeeEeccccCCceeEEEEeC-CCCEEEEEE----------------CCCcEEEEEC
Q 001190 553 LFSCGTSK-DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVG----------------EDSQIKFWDM 614 (1128)
Q Consensus 553 l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s----------------~dg~i~iwd~ 614 (1128)
|+..+... ...+.|++||+.+++........ ... +.|+| +++.+++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 88775421 11245999999988764433221 123 88999 999888765 3478999999
Q ss_pred CCCeeeEEEecCCCC--------CCcceEEEcCCCCEEEEEEc-CCcEEEEEcc
Q 001190 615 DNVNILTSTDAEGGL--------PNLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~--------~~v~~v~~sp~~~~l~~~~~-dg~i~iw~~~ 659 (1128)
.+++........... ..+..++|+|||+.|+.++. ++...+|.+.
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 888764433222110 02466899999999887775 4555555443
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=2.3e-16 Score=180.31 Aligned_cols=318 Identities=8% Similarity=-0.028 Sum_probs=203.7
Q ss_pred EEEeCCCCceeeEeccccCC----ceeEEEEeCCCCEEEEEECC---CcEEEEECCCCeeeEEEecCCCCCCcceEEEcC
Q 001190 567 VEWNESEGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1128)
Q Consensus 567 ~~wd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp 639 (1128)
..+|..+++.+..+..+... .+..++|+|+|++|+.+... ..|++||+.+++......... .....+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG--DNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC--BCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC--CccccceECC
Confidence 34577788777777654331 25668899999998887643 478999999887655433221 1234488999
Q ss_pred CCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCC
Q 001190 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVD 719 (1128)
Q Consensus 640 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1128)
||+.|+.++.++.|++|++.++... .....
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~-~~~~~------------------------------------------------- 120 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQ-VIYTV------------------------------------------------- 120 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEE-EEEEC-------------------------------------------------
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcE-EEEec-------------------------------------------------
Confidence 9999999999999999998765211 00000
Q ss_pred CCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCC
Q 001190 720 PTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN 799 (1128)
Q Consensus 720 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~ 799 (1128)
+.. ++++|+.++....++...+|.
T Consensus 121 -------------------------------------------~~~------~~~~g~~l~~~~~~~~~~~~~------- 144 (396)
T 3c5m_A 121 -------------------------------------------DEE------WKGYGTWVANSDCTKLVGIEI------- 144 (396)
T ss_dssp -------------------------------------------CTT------EEEEEEEEECTTSSEEEEEEE-------
T ss_pred -------------------------------------------ccc------cCCCCCEEEeccCCccccccc-------
Confidence 000 334444444444433333331
Q ss_pred CCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEE------eCCeEEEEECCCceEEEEeeCCCC
Q 001190 800 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA------TGGKISLFNMMTFKVMTTFMSPPP 873 (1128)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~------~dg~i~vwd~~~~~~~~~~~~~~~ 873 (1128)
..++++||++.++.. .+..|.+||+.+++..... .+..
T Consensus 145 -----------------------------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~ 188 (396)
T 3c5m_A 145 -----------------------------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTA 188 (396)
T ss_dssp -----------------------------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESS
T ss_pred -----------------------------------cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCc
Confidence 012466788776654 2456999999988765554 3566
Q ss_pred CeeEEEEcCCCCCEEEEEeCC------CcEEEEecccceeeeccccc-ccCeeEEEEcCCCCEEEEEcCC-----CcEEE
Q 001190 874 ASTFLAFHPQDNNIIAIGTED------STIHIYNVRVDEVKSKLKGH-QKRITGLAFSTSLNILVSSGAD-----AQLCV 941 (1128)
Q Consensus 874 ~v~~l~~s~~d~~~lasg~~d------g~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~~~D-----g~i~i 941 (1128)
.+..+.|+|++++.|+..+.+ ..|.+|++..++........ ...+..++|+|||++|+.++.+ +.|++
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 789999999446656655543 46888998766543333321 2357889999999988877544 44999
Q ss_pred EECCCCcccceeEEeecCCCCCCCccEEEEcC-CCCEEEEEe-----------------cCeEEEEecCCcccccccccC
Q 001190 942 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH-----------------ETQLAIYDASKMERIRQWTPQ 1003 (1128)
Q Consensus 942 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~-----------------d~~i~v~d~~~~~~~~~~~~~ 1003 (1128)
||+.+++...... .. ... +.|+| ||++++.+. +..|++||+.+++.. .+..+
T Consensus 269 ~d~~~g~~~~l~~---~~-----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~ 338 (396)
T 3c5m_A 269 ANPETLENEEVMV---MP-----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH 338 (396)
T ss_dssp ECTTTCCEEEEEE---CC-----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC
T ss_pred EECCCCCeEEeee---CC-----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC
Confidence 9999876432211 11 122 89999 999888642 368999999877653 23222
Q ss_pred CCCCC-----------CeEEEEEeeCCCEEEEEec-CCcE--EEEecCCCce
Q 001190 1004 DALSA-----------PISCAVYSCNSQLVFATFC-DGNI--GVFDADTLRL 1041 (1128)
Q Consensus 1004 ~~h~~-----------~v~~l~~s~dg~~l~t~~~-dg~i--~vwd~~~~~~ 1041 (1128)
.. .+..++|+|||++|+.++. ++.. +++++.+++.
T Consensus 339 ---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 339 ---STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp ---CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred ---CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 22 2567889999998887664 4554 4445555544
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=5.9e-15 Score=181.07 Aligned_cols=252 Identities=10% Similarity=-0.016 Sum_probs=176.4
Q ss_pred eeccCCCcceEEEEEccCCCEEEEE--eCCCeEEEEEccCCCcceeceeeccccccee---------EEEEe--cCCCeE
Q 001190 400 SIFKDVPISVSRVAWSPDGNYVGVA--FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN---------DLAFA--YPNKLL 466 (1128)
Q Consensus 400 ~~~~~h~~~V~~l~~spdg~~las~--~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~---------~l~fs--~d~~~~ 466 (1128)
..+.+|...|..++|++++.++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE
Confidence 3477899999999999987777777 558899999975444333 3556766666 67676 999941
Q ss_pred EEEEec-CCCeEEEEecC--C-CeEEEecC-----CCCCeEEEeccCCCCccEEEEEecc----------CcEEEEecCC
Q 001190 467 CVVTCG-DDKLIKVWELS--G-RKLFNFEG-----HEAPVYSICPHHKENIQFIFSTAID----------GKIKAWLYDT 527 (1128)
Q Consensus 467 ~l~s~s-~d~~i~vWd~~--g-~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~~wd~~~ 527 (1128)
|+.++ .+..|.+|+.. | .....+.. |...+.+++|+| ||+.|++++.+ ..|++||+..
T Consensus 94 -la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 94 -LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp -EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred -EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 44443 35677777754 3 45566665 667788999977 77899988877 5899999987
Q ss_pred C-----Cceeeec-CCCCeEEEEEEcCCCCeEEEeeeccC----CCceEEEEeCC-CC---ceeeEeccccCCceeEEEE
Q 001190 528 M-----GSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNES-EG---TIKRTYAGFRKKSNGVVQF 593 (1128)
Q Consensus 528 ~-----~~~~~~~-~~~~~i~~~~~s~~g~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~v~~~~~ 593 (1128)
. +....+. .+...+..++|||||++|+..+.+.. ....|++||+. ++ +......++. ..+..+.|
T Consensus 171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~-~~~~~~~~ 249 (662)
T 3azo_A 171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE-EAIAQAEW 249 (662)
T ss_dssp TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT-BCEEEEEE
T ss_pred CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC-ceEcceEE
Confidence 2 2334444 55567888999999999998775321 13589999999 57 4433333333 37888999
Q ss_pred eCCCCEEEEEECCC--cEEEEECCCCeeeEEEecCCCC------CCcceEEEcCCCCEEEEEEcCCcEEEEEcc
Q 001190 594 DTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGL------PNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1128)
Q Consensus 594 ~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~ 659 (1128)
+|||+.+++++.++ .|++||..+++.......+... ..+..++|+|++++++++.. +.++||.++
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 99999777777788 6777777677655443322111 01457788888888888887 888888543
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=3.8e-15 Score=182.71 Aligned_cols=286 Identities=11% Similarity=0.023 Sum_probs=187.8
Q ss_pred cCCCcEEEEEEeCCCCcEEEEe--eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceE---------
Q 001190 342 HQGSTVISMDFHPSHQTLLLVG--SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS--------- 410 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~g--s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--------- 410 (1128)
+|...|..++|++++- +++.+ +.++...||....+.... .+..|...|.
T Consensus 21 ~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 21 SRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYSGF 80 (662)
T ss_dssp HTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTCCC
T ss_pred hcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccCCc
Confidence 4778899999998865 55555 457899999964443322 1444555555
Q ss_pred EEEEc--cCCCE-EEEEeC-CCeEEEEEcc--C-CCcceeceeecc-----cccceeEEEEecCCCeEEEEEecCC----
Q 001190 411 RVAWS--PDGNY-VGVAFT-KHLIQLYSYA--G-SNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGDD---- 474 (1128)
Q Consensus 411 ~l~~s--pdg~~-las~~~-d~~i~vwd~~--~-~~~~~~~~~~~~-----h~~~v~~l~fs~d~~~~~l~s~s~d---- 474 (1128)
..+|+ |||++ |+.++. +..|.+|++. + ++ .+ .+.. |...+.+++|+|||+ .|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~ 154 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGE 154 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSS
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCC
Confidence 55565 99999 876654 5567677765 3 43 23 2444 677899999999999 67777666
Q ss_pred ------CeEEEEecCC------CeEEEec-CCCCCeEEEeccCCCCccEEEEEecc--------CcEEEEecC-CC---C
Q 001190 475 ------KLIKVWELSG------RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYD-TM---G 529 (1128)
Q Consensus 475 ------~~i~vWd~~g------~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~~wd~~-~~---~ 529 (1128)
..|++||..+ .....+. .+...+..++|+| ||++|+.++.+ ..|++||++ ++ .
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP--DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT--TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC--CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999444 4455665 6666778888866 77889887755 379999998 44 2
Q ss_pred ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCC-------ceeEEEEeCCCCEEEE
Q 001190 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK-------SNGVVQFDTTQNHFLA 602 (1128)
Q Consensus 530 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~ 602 (1128)
.......+...+..+.|+|||++++++. .++...|++||..+++.......+... .+..++|++++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEEC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEEC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 3333334467899999999999554443 223347888888777765444433221 1456889999999999
Q ss_pred EECCCcEEEE--ECCCCeeeEEEecCCCCCCcceE-EEcCCCCEEEEEEcCCc--EEEEEcccC
Q 001190 603 VGEDSQIKFW--DMDNVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTTADNG--FKILANAIG 661 (1128)
Q Consensus 603 ~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~~~~~dg~--i~iw~~~~~ 661 (1128)
++. +.+++| |..+++ +..+..+ ...+..+ +++++.-.+++++.+.. |.++++.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 999999 666666 4444433 3345555 44333333344454544 444555454
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=8.4e-15 Score=161.83 Aligned_cols=251 Identities=12% Similarity=0.070 Sum_probs=185.8
Q ss_pred CCCeeEEEeccCCCeEEEEeCC-------------------------eEEEEECCCceEEEEee-CCCCCeeEEEEcCCC
Q 001190 831 EEAVPCIALSKNDSYVMSATGG-------------------------KISLFNMMTFKVMTTFM-SPPPASTFLAFHPQD 884 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~dg-------------------------~i~vwd~~~~~~~~~~~-~~~~~v~~l~~s~~d 884 (1128)
-..+.+++++++|+++++..++ .|.+||..+++.+..+. ++-.....+++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4569999999999999888733 69999999999877665 3445789999999 8
Q ss_pred CCEEEEEeCCCcEEEEecccce-eeecc---------cccccCeeEEEEcC-CCCEEEEEc-CCCcEEEEECCCCcccce
Q 001190 885 NNIIAIGTEDSTIHIYNVRVDE-VKSKL---------KGHQKRITGLAFST-SLNILVSSG-ADAQLCVWSIDTWEKRKS 952 (1128)
Q Consensus 885 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~l~s~~-~Dg~i~iwd~~~~~~~~~ 952 (1128)
++++++...++.|++|+..... .+..+ .++.....+++++| ++.++++.+ .++.|++|+. .++....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEE
Confidence 8899999999999999976442 34444 34555789999999 788888886 6899999994 4554333
Q ss_pred eEEeecC----CCCCCCccEEEEcCC-CCEEEEE-ecCeEEEEecCCcccccccccCCCCCCCeEEEEEee------CCC
Q 001190 953 VTIHIPA----GKTPTGDTRVQFNAD-QVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC------NSQ 1020 (1128)
Q Consensus 953 ~~~~~~~----~~~~~~v~~v~~s~d-~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~------dg~ 1020 (1128)
+...... .........++++|+ +.++++. .++.|++|+..+++.+..+... .+...+.+++|+| +|+
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEETTEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecCCEEEEeCCC
Confidence 3221100 001134789999999 5544443 3789999999988887776543 2367788999999 444
Q ss_pred EEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC
Q 001190 1021 LVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1021 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~ 1094 (1128)
..++...+..|++||+.+++.+..+... ..+...+.+++++| ++.++++...++.|++|++...
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~---------~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPV---------RKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCS---------SSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCC---------CCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 3333344568999999999998887521 13445678999999 5789999999999999998653
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=1e-13 Score=162.42 Aligned_cols=331 Identities=14% Similarity=0.132 Sum_probs=220.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcc--cCccccccccCCc
Q 001190 595 TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA--IGLRSLRAVENPP 672 (1128)
Q Consensus 595 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~ 672 (1128)
+.+..+++...++.|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+. +. .....+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~--- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIK--- 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEE---
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEe---
Confidence 334456666789999999999999998887532 35689999999999999999999999985 32 1111100
Q ss_pred cccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCce
Q 001190 673 FEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQC 752 (1128)
Q Consensus 673 ~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 752 (1128)
T Consensus 238 -------------------------------------------------------------------------------- 237 (567)
T 1qks_A 238 -------------------------------------------------------------------------------- 237 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEecCCCCCcccEEEEEEe----cCcceEEEeec-cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccC
Q 001190 753 RLVTMPESTDTSSKVVRLLYT----NSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG 827 (1128)
Q Consensus 753 ~~~~~~~~~~~~~~i~~l~~s----~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1128)
.......++|+ |||++++++.. ++.+.++|....+ ..... ..+..-.....
T Consensus 238 ----------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~------~~~~i-------~~~~~~~~~~~- 293 (567)
T 1qks_A 238 ----------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE------PKKIQ-------STRGMTYDEQE- 293 (567)
T ss_dssp ----------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC------EEEEE-------ECCEECTTTCC-
T ss_pred ----------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc------EEEEE-------ecccccccccc-
Confidence 11124678899 69998888776 5888888743211 11100 00000000000
Q ss_pred CCC-CCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEE--EEeeCCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEe
Q 001190 828 VNL-EEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVM--TTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYN 901 (1128)
Q Consensus 828 ~~~-~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~--~~~~~~~~~v~~l~~s~~d~~~lasg~-~dg~v~iwd 901 (1128)
.| ...+..+.+++++..++... .|+|.++|..+.+.+ ..+. .......+.|+| ++++++++. .++.|.++|
T Consensus 294 -~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD 370 (567)
T 1qks_A 294 -YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVID 370 (567)
T ss_dssp -EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEE
T ss_pred -ccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEE
Confidence 02 23678899999987766654 689999999875432 2222 334567889999 788766554 678999999
Q ss_pred cccceeeecccc-----cccCeeEEEEcCCCC-EEEEEc-CCCcEEEEECCC-------CcccceeEEeecCCCCCCCcc
Q 001190 902 VRVDEVKSKLKG-----HQKRITGLAFSTSLN-ILVSSG-ADAQLCVWSIDT-------WEKRKSVTIHIPAGKTPTGDT 967 (1128)
Q Consensus 902 ~~~~~~~~~l~~-----h~~~V~~l~~s~d~~-~l~s~~-~Dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~v~ 967 (1128)
+.+++.+..+.. |.+....+ ++|++. .+++.. .++.|.++|..+ .+.++.+... + ....
T Consensus 371 ~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~---g---~g~~ 443 (567)
T 1qks_A 371 TKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL---G---GGSL 443 (567)
T ss_dssp TTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS---C---SCCC
T ss_pred CCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC---C---CCCE
Confidence 999987766543 43323222 578754 445543 468999999988 3333322221 1 2235
Q ss_pred EEEEcCCCCEEEEEe--------cCeEEEEecCCc-----ccc-ccc-----ccCCCCCCCeEEEEEeeCCCEEEEEec-
Q 001190 968 RVQFNADQVRMLVVH--------ETQLAIYDASKM-----ERI-RQW-----TPQDALSAPISCAVYSCNSQLVFATFC- 1027 (1128)
Q Consensus 968 ~v~~s~d~~~l~~~~--------d~~i~v~d~~~~-----~~~-~~~-----~~~~~h~~~v~~l~~s~dg~~l~t~~~- 1027 (1128)
.+..+|+++++.+.. .++|.|+|+.+. ... ..+ .....-...+..+.|++||+++.++..
T Consensus 444 ~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~ 523 (567)
T 1qks_A 444 FIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWN 523 (567)
T ss_dssp CEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEEC
T ss_pred EEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeec
Confidence 578999999999864 358999999877 211 111 111111467899999999998887643
Q ss_pred ----CCcEEEEecCCCceEEEeC
Q 001190 1028 ----DGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1028 ----dg~i~vwd~~~~~~~~~~~ 1046 (1128)
++.|.|+|.++++++..+.
T Consensus 524 ~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 524 GKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCCcEEEEECCCceEEEEeC
Confidence 7999999999999998887
No 175
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.67 E-value=9.4e-11 Score=146.21 Aligned_cols=585 Identities=10% Similarity=0.047 Sum_probs=335.7
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
...|+++.-.++|..+ .|+.+| +..|| |... +.+..... .. ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~lW--igT~~G-L~ryD---G~~f-----~~~~~~~~----~~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGNMW--FATYDG-VNKYD---GYAF-----TVYQHNED----DP--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSCEE--EEETTE-EEEEC---SSCE-----EEECCCTT----CT--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCCEE--EeecCc-CcccC---CCce-----EEEeCCCC----CC--CcccccceeEEEECCCCCEEE-
Confidence 3479999999999733 455665 45565 3221 11111000 00 000246799999999987665
Q ss_pred EeCCCeEEEEEccCCCcceeceeecccc----cceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecC-C-CCC
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-H-EAP 496 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~----~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~-h-~~~ 496 (1128)
|+.+| +..||..+++... +.... ..|.++...++|. +.+ ++. +.|..|| .+++. ..+.. + ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~-~~~~~~~~~~~ 173 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKF-IDDSFSTAMHK 173 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEE-ECSSSCHHHHT
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEE-EeccCCCCCCc
Confidence 44555 8899987764322 21111 1289999998887 344 343 5688999 54433 22221 1 112
Q ss_pred -eEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-cCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 497 -VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 497 -v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
|.++.... ++ .|..++.++.+..|+.......... ......|.++...++|.+.+... ...+..||..++
T Consensus 174 ~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~ 245 (795)
T 4a2l_A 174 TIASTLYRQ--GD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTK 245 (795)
T ss_dssp CCEEEEEEE--TT-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTT
T ss_pred ceEEEEECC--CC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCC
Confidence 77776643 44 4555666656888887665433221 12345688888888887665442 334889998876
Q ss_pred ceeeEecc------ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC-----CCCCCcceEEEcCCCCE
Q 001190 575 TIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----GGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 575 ~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~sp~~~~ 643 (1128)
+....... .....|.++...++|.. ..|+.+ .|.+||..+++........ -....|.++...++|.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~- 322 (795)
T 4a2l_A 246 EIKNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG- 322 (795)
T ss_dssp EEEEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-
T ss_pred eEEEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-
Confidence 65433221 11235888888877764 445555 6899998887654432211 1123688888888876
Q ss_pred EEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCC
Q 001190 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSR 723 (1128)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1128)
|.+|+.++-|..|+..+.. +...... +...
T Consensus 323 lWigt~~~Gl~~~~~~~~~--~~~~~~~---------------~~~~--------------------------------- 352 (795)
T 4a2l_A 323 MWLGTYFGGLNYYHPIRNR--FKNIRNI---------------PYKN--------------------------------- 352 (795)
T ss_dssp EEEEESSSCEEEECGGGGS--SEEECCC---------------TTSS---------------------------------
T ss_pred EEEEECCCCeEEeCCCccc--ceEEcCC---------------CCCC---------------------------------
Confidence 4556667778777754431 1110000 0000
Q ss_pred CCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCc
Q 001190 724 SMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 803 (1128)
Q Consensus 724 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~ 803 (1128)
......|.++...++|. |-.++.++-+..|+......
T Consensus 353 -------------------------------------~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~----- 389 (795)
T 4a2l_A 353 -------------------------------------SLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF----- 389 (795)
T ss_dssp -------------------------------------SCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE-----
T ss_pred -------------------------------------CCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE-----
Confidence 00334578888888887 44566665677776432110
Q ss_pred eeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCC-eEEEEeCCeEEEEECCCceEEEEee----CCCCCeeEE
Q 001190 804 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS-YVMSATGGKISLFNMMTFKVMTTFM----SPPPASTFL 878 (1128)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~la~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~l 878 (1128)
+.+....+.. -.. -....|.+++..++|+ +.+...++.|.+||..+++...-.. .+...|.++
T Consensus 390 -------~~~~~~~~~~----~~~-l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i 457 (795)
T 4a2l_A 390 -------TSYTLQEDES----ARG-IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAI 457 (795)
T ss_dssp -------EEECCC----------C-CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE
T ss_pred -------EEEecCCCCc----ccC-CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE
Confidence 0010000000 000 0245689999999998 4444446789999998876543321 134578999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEecccceeeeccc------ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccce
Q 001190 879 AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK------GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 952 (1128)
Q Consensus 879 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~ 952 (1128)
...+ ++.+.+. +. +.|.+|+..+++...... .+...|.++...++|.+.+... + -|..||..+++. .
T Consensus 458 ~~d~-~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~ 530 (795)
T 4a2l_A 458 LPDG-EGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--Q 530 (795)
T ss_dssp EECS-SSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--E
T ss_pred EECC-CCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--E
Confidence 9988 7776554 44 458899988775543221 1236789999999998777554 4 488899877543 1
Q ss_pred eEEe-ecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCC-CCCCeEEEEEeeCCCEEEEEecCCc
Q 001190 953 VTIH-IPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDA-LSAPISCAVYSCNSQLVFATFCDGN 1030 (1128)
Q Consensus 953 ~~~~-~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~t~~~dg~ 1030 (1128)
.... .........+.++..+++|.+.+++.. .+..||..+++... +....+ ....|.++...++|++.+++ ++-
T Consensus 531 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~G 606 (795)
T 4a2l_A 531 KASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST--NRG 606 (795)
T ss_dssp ECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE--TTE
T ss_pred EecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc--CCc
Confidence 1100 011111256788899999987665554 88999987664322 221111 14568899888889866655 456
Q ss_pred EEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1031 IGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1031 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
|..|+.++++.. .+.....+. .......++...+ ++ .|..|+.+|- ..++...
T Consensus 607 l~~~~~~~~~~~-~~~~~dGl~------~~~f~~~~~~~~~-~G-~l~~g~~~Gl-~~~~p~~ 659 (795)
T 4a2l_A 607 ISCFNPETEKFR-NFTESDGLQ------SNQFNTASYCRTS-VG-QMYFGGINGI-TTFRPEL 659 (795)
T ss_dssp EEEEETTTTEEE-EECGGGTCS------CSCEEEEEEEECT-TS-CEEEEETTEE-EEECGGG
T ss_pred eEEEcCCCCcEE-EcCCcCCCc------cccCccCceeECC-CC-eEEEecCCce-EEEcHHH
Confidence 888999877654 333111111 1111123445544 44 4666777775 4456543
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.7e-14 Score=159.28 Aligned_cols=248 Identities=14% Similarity=0.103 Sum_probs=182.3
Q ss_pred CcEEEEEEeCCCCcEEEEeecc------------------------CeEEEEEccCCceecccccccccccccCccccce
Q 001190 345 STVISMDFHPSHQTLLLVGSSN------------------------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1128)
+.|.+++|+|+|+ ++++.+.+ +.|.+||..+|+.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 4699999999998 66777666 4799999888876531
Q ss_pred eccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCC-cceeceee------cccccceeEEEEec-CCCeEEEEEec
Q 001190 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQI------DAHVGAVNDLAFAY-PNKLLCVVTCG 472 (1128)
Q Consensus 401 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~------~~h~~~v~~l~fs~-d~~~~~l~s~s 472 (1128)
.-.++-.....++++|+|+++++...++.|++||.+... .+..+... .++......++|+| +|. ++++.+
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv~d~ 162 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFVSDG 162 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC--EEEEEC
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe--EEEEeC
Confidence 122455678999999999988888889999999986542 23321000 24555789999999 677 677775
Q ss_pred -CCCeEEEEecCCCeEEEecCC----------CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec--CCCC
Q 001190 473 -DDKLIKVWELSGRKLFNFEGH----------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGH 539 (1128)
Q Consensus 473 -~d~~i~vWd~~g~~~~~~~~h----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~ 539 (1128)
.++.|++||.+|..+..+... -.....+++.++ .+.++++...++.|++|+.++++....+. ....
T Consensus 163 ~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~ 241 (329)
T 3fvz_A 163 YCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHASFGR 241 (329)
T ss_dssp SSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTT
T ss_pred CCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEeccccCC
Confidence 689999999888888777432 234788999763 25777888889999999998777666653 3455
Q ss_pred eEEEEEEcCCCCeEEEeee---ccCCCceEEEEeCCCCceeeEec---cccCCceeEEEEeCCCCEEEEEECCCcEEEEE
Q 001190 540 WCTTMLYSADGSRLFSCGT---SKDGDSFLVEWNESEGTIKRTYA---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~---~~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 613 (1128)
.+..++++| +..+...+. .......|++|+..+++.+..+. ++.. ....++++++|..+++...++.|++|+
T Consensus 242 ~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 242 NVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp CEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred CcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 788999999 433333221 01135589999999999998874 3333 578899999997777777899999999
Q ss_pred CCC
Q 001190 614 MDN 616 (1128)
Q Consensus 614 ~~~ 616 (1128)
+..
T Consensus 320 ~~~ 322 (329)
T 3fvz_A 320 LTE 322 (329)
T ss_dssp EEE
T ss_pred CCc
Confidence 753
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=5.8e-13 Score=155.95 Aligned_cols=187 Identities=13% Similarity=0.061 Sum_probs=140.9
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecC--CCCceeeecCCCCeEEE
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCTT 543 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~i~~ 543 (1128)
++++...+++|.++| .+++.+..+... ..+..+.|++ ||+++++++.|+.|.+||+. +.+....+.. +.....
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ 244 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARS 244 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCce
Confidence 788899999999999 888888888643 3567888866 77899999999999999995 5555555554 445789
Q ss_pred EEEc----CCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc----------cCCceeEEEEeCCCCEEEE-EECCCc
Q 001190 544 MLYS----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF----------RKKSNGVVQFDTTQNHFLA-VGEDSQ 608 (1128)
Q Consensus 544 ~~~s----~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~-~s~dg~ 608 (1128)
++|+ |||++++++.. ..+.+.++|..+.+.+..+... ....+..+..++++..++. ...+|.
T Consensus 245 ia~s~~~~pDGk~l~v~n~---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred eEEccccCCCCCEEEEEEc---cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 9999 69999998875 4789999999999988876532 1224667788887665544 457799
Q ss_pred EEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEE-cCCcEEEEEcccC
Q 001190 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1128)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~ 661 (1128)
|.++|..+.+......... ......+.|+|++++++++. .++.|.++|+.++
T Consensus 322 v~~vd~~~~~~~~v~~i~~-~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEecCCCccceeeeeec-cccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 9999988764333222111 12456889999999988776 4788999998765
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.66 E-value=6.9e-14 Score=151.34 Aligned_cols=246 Identities=12% Similarity=0.132 Sum_probs=177.9
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE-ccCCCEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-SPDGNYV 421 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~~l 421 (1128)
+-..+.+++++|+|+ ++++.+.++.|.+||.. ++.+..... .....+|...+.++++ .++|+++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCeEE
Confidence 445799999999998 77887889999999987 544321000 0001235567899999 5777777
Q ss_pred EEEeC-CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec--CCCCCeE
Q 001190 422 GVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE--GHEAPVY 498 (1128)
Q Consensus 422 as~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~--~h~~~v~ 498 (1128)
++... ++.|.+|| .+++.+..+ -..+...+.+++++++|+ ++++...++.|.+||.+++.+..+. ++...+.
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~~~--~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVRKF--GATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPN 167 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEEEE--CTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEEEEEECTTTCSSEE
T ss_pred EEcCCCCCEEEEEC-CCCcEEEEe--cCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcE
Confidence 66643 88999999 455554422 123456789999999998 7788888899999997787777664 4455688
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC--CeEEEEEEcCCCCeEEEeeeccCCCc-eEEEEeCCCCc
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDS-FLVEWNESEGT 575 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~~i~~~~~s~~g~~l~~~~~~~~~~~-~i~~wd~~~~~ 575 (1128)
++++++ ++.++++...++.|++||.+ +.....+...+ ..+..++++++|+++++.. .++ .|.+||. +++
T Consensus 168 ~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~----~~~~~i~~~~~-~g~ 239 (286)
T 1q7f_A 168 GVVVND--KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADN----HNNFNLTIFTQ-DGQ 239 (286)
T ss_dssp EEEECS--SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEEC----SSSCEEEEECT-TSC
T ss_pred EEEECC--CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeC----CCCEEEEEECC-CCC
Confidence 999866 56777777889999999974 34444444332 5789999999998777765 254 8999995 566
Q ss_pred eeeEeccccC-CceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Q 001190 576 IKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1128)
Q Consensus 576 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~ 617 (1128)
.+..+..+.. ..+..++++++|+.+++ +.++.|++|+....
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 240 LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 6676665433 23668999999876655 67999999997654
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=1.4e-14 Score=161.86 Aligned_cols=262 Identities=10% Similarity=0.115 Sum_probs=177.6
Q ss_pred CcEEEEEEeCCCCcEEEEe--------eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 345 STVISMDFHPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~g--------s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
..+...+| ||++++.+. ..++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 45778888 998665542 236789999998876421 2 4688999999
Q ss_pred CCCEEEEEeCC---C--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC------------------
Q 001190 417 DGNYVGVAFTK---H--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------------------ 473 (1128)
Q Consensus 417 dg~~las~~~d---~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~------------------ 473 (1128)
||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 37888888876543 223334 999999999994 554442
Q ss_pred ---------CCeEEEEe-cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccC-------cEEEEecCCCCceeeecC
Q 001190 474 ---------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-------KIKAWLYDTMGSRVDYDA 536 (1128)
Q Consensus 474 ---------d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~~wd~~~~~~~~~~~~ 536 (1128)
...|.+|| .+++.+..+.. . .+..++|++ +| +++++..++ ...+|.++ .+....+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25799999 56655355554 3 778888876 66 777776542 45666665 333333333
Q ss_pred CCCeEEEEEEcCCCCeEEEeeeccC----CCceEEEEeCCCCceeeEeccccCCceeE-EEEeCCCCEEEEEECCCcEEE
Q 001190 537 PGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKF 611 (1128)
Q Consensus 537 ~~~~i~~~~~s~~g~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~s~dg~i~i 611 (1128)
+ ..+..+ +|||++|+..+.... ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.+++
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 3 444444 999999988764221 135788898 5655444444433 6665 8899 88 8888899999999
Q ss_pred EECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE-EEEEcc
Q 001190 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF-KILANA 659 (1128)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i-~iw~~~ 659 (1128)
| +.+++....... ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 288 ~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 876665444332 34688999999 677777777664 777765
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=1.2e-13 Score=149.44 Aligned_cols=244 Identities=11% Similarity=0.099 Sum_probs=178.1
Q ss_pred CCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceee---cccccceeEEEEe-cCCCeEEEEEec-CCCeEE
Q 001190 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI---DAHVGAVNDLAFA-YPNKLLCVVTCG-DDKLIK 478 (1128)
Q Consensus 404 ~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~---~~h~~~v~~l~fs-~d~~~~~l~s~s-~d~~i~ 478 (1128)
++-..+.+++++|+|+++++...++.|.+||.+ ++.+..+... .+|...+..+++. +++. ++++.. .++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 455678999999999988888889999999987 4444322110 2355678999995 6666 555553 388999
Q ss_pred EEecCCCeEEEecC-CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec--CCCCeEEEEEEcCCCCeEEE
Q 001190 479 VWELSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 479 vWd~~g~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~i~~~~~s~~g~~l~~ 555 (1128)
+||.+|+.+..+.. +...+.++++.+ ++.++++...++.|.+||.+ +.....+. .+...+..++++++|+.+++
T Consensus 104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EECCCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 99988888777643 445688999866 56777777788999999864 33333333 23446899999999986666
Q ss_pred eeeccCCCceEEEEeCCCCceeeEecccc-CCceeEEEEeCCCCEEEEEECCC-cEEEEECCCCeeeEEEecCCCCCCcc
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDS-QIKFWDMDNVNILTSTDAEGGLPNLP 633 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1128)
.. .++.|++||. +++.+..+.... ......++++++|+.+++...++ .|.+|+. +++.+..+..+.....+.
T Consensus 181 ~~----~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 181 DN----RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp EG----GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred EC----CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 54 3778999997 456666665432 12577899999998888877776 9999995 566666665544333467
Q ss_pred eEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 634 RLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 634 ~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
+++++|+|+++++ +.++.|++|+...
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 8999999986666 6799999998754
No 181
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.63 E-value=2.3e-10 Score=142.75 Aligned_cols=535 Identities=8% Similarity=0.017 Sum_probs=317.2
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
...|.++...++|. +. .|+.+ .+..||..+++...- . ...... ...|.++...++|...+.
T Consensus 87 ~n~I~~i~~d~~g~-lW-igT~~-Gl~~yd~~~~~f~~~---~------------~~~~~~-~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR-VW-IGTRD-GLSRYDEEKDIFQNF---F------------YEKNGK-HLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC-EE-EEESS-CEEEEETTTTEEEEE---C------------CEETTE-ECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC-EE-EEeCC-chheeCCCCCeEEec---c------------ccccCC-CceEEEEEECCCCCEEEE
Confidence 35699999999998 33 34444 588999876653210 0 000000 011889999988876664
Q ss_pred EeCCCeEEEEEccCCCcceeceeeccc-ccc-eeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEe-cCCCCCeEE
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAH-VGA-VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEAPVYS 499 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~-v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~-~~h~~~v~~ 499 (1128)
. . +.|..||..+++.... ..++ ... |.++...++|. +..++.++.|..|| .+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~~---~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFIDD---SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEECS---SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEec---cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 4 4588999877543221 0111 123 88898888886 33455555688999 555443221 123456888
Q ss_pred EeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-------CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC
Q 001190 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 500 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-------~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
+.... ++ .|..++.++-+..||..+........ .....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQS--PT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEEE--TT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEcC--CC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 77643 44 45566655558888876543332211 1235799999999888665442 3 48899988
Q ss_pred CCceeeEecc------ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC----CCCCCcceEEEcCCCC
Q 001190 573 EGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE----GGLPNLPRLRFSKEGN 642 (1128)
Q Consensus 573 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~ 642 (1128)
+++....... .....|.++...++|. |..|+.++.|..|+..++......... -....|.++...++|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7765433221 1223688888888775 566777788999987665433221111 0123578888888876
Q ss_pred EEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCC
Q 001190 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (1128)
Q Consensus 643 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1128)
|.+|+.++-|..|+..++. ....... +.+.
T Consensus 370 -lWiGt~~~Gl~~~~~~~~~--~~~~~~~---------------~~~~-------------------------------- 399 (795)
T 4a2l_A 370 -LWIGTNDGGLNLYNPITQR--FTSYTLQ---------------EDES-------------------------------- 399 (795)
T ss_dssp -EEEEESSSCEEEECTTTCC--EEEECCC---------------------------------------------------
T ss_pred -EEEEECCCCeEEEcCCCCc--EEEEecC---------------CCCc--------------------------------
Confidence 4457777778888765431 1000000 0000
Q ss_pred CCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCC
Q 001190 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG 802 (1128)
Q Consensus 723 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~ 802 (1128)
. . ......|.++...++|..|..++.++.+..|+......
T Consensus 400 ---------------------------~------~---~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~---- 439 (795)
T 4a2l_A 400 ---------------------------A------R---GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV---- 439 (795)
T ss_dssp --------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE----
T ss_pred ---------------------------c------c---CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE----
Confidence 0 0 00234678888888887455566655677776432110
Q ss_pred ceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeC------CCCCee
Q 001190 803 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS------PPPAST 876 (1128)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~------~~~~v~ 876 (1128)
+.+...... .....|.++...++|++.+... +.|.+||..+++....... ....|.
T Consensus 440 --------~~~~~~~~~---------l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 440 --------ENFNQRNSQ---------LVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp --------EEECTTTSC---------CSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEE
T ss_pred --------EEeecCCCC---------cCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEE
Confidence 011100000 1346789999999998777665 5688999888765432211 235689
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc-------ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcc
Q 001190 877 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-------GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 949 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-------~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~ 949 (1128)
++...+ ++.+.+. +. +-|..|+..+++. .+. .+...|.++...++|.+.++.. . -|..||..+++.
T Consensus 502 ~i~~d~-~g~lWig-t~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 502 TLFRDS-HKRLWIG-GE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQI 574 (795)
T ss_dssp EEEECT-TCCEEEE-ES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEE
T ss_pred EEEECC-CCCEEEE-eC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcE
Confidence 999988 7776654 44 5688999877665 221 2345789999999998777554 3 488899877542
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCC-CCCe--EEEEEeeCCCEEEEEe
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDAL-SAPI--SCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h-~~~v--~~l~~s~dg~~l~t~~ 1026 (1128)
. ......+-....+.++..+++|.+.+++ ++.+..|+..+++. ..+...++. ...+ .++...+||++++ |+
T Consensus 575 ~---~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~ 648 (795)
T 4a2l_A 575 K---RYNTTNGLPNNVVYGILEDSFGRLWLST-NRGISCFNPETEKF-RNFTESDGLQSNQFNTASYCRTSVGQMYF-GG 648 (795)
T ss_dssp E---EECGGGTCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEE-EEECGGGTCSCSCEEEEEEEECTTSCEEE-EE
T ss_pred E---EeCCCCCCchhheEEEEECCCCCEEEEc-CCceEEEcCCCCcE-EEcCCcCCCccccCccCceeECCCCeEEE-ec
Confidence 2 1222223233567888899999876665 57788888876543 223222211 2222 4667778888554 55
Q ss_pred cCCcEEEEecC
Q 001190 1027 CDGNIGVFDAD 1037 (1128)
Q Consensus 1027 ~dg~i~vwd~~ 1037 (1128)
.+| +..++.+
T Consensus 649 ~~G-l~~~~p~ 658 (795)
T 4a2l_A 649 ING-ITTFRPE 658 (795)
T ss_dssp TTE-EEEECGG
T ss_pred CCc-eEEEcHH
Confidence 566 5556654
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.62 E-value=1.7e-13 Score=151.95 Aligned_cols=272 Identities=10% Similarity=0.012 Sum_probs=185.2
Q ss_pred CcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
..|.+++|+|++. .++..+.++.++.|. ++... .+.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~-------------------~~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTIT---AEPWL-------------------EISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEEE---CEEEE-------------------EEESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCcc-ceeEEeecccCcccc---cceeE-------------------EEeccCccccCcEECCCCCEEEEE
Confidence 3578889999987 445557788999992 33221 145566678999999999988888
Q ss_pred eCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC----CeEEEEe-cCCCeEEEec--CCCCCe
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLFNFE--GHEAPV 497 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d----~~i~vWd-~~g~~~~~~~--~h~~~v 497 (1128)
..++.|.+||.++++.... ...+...+.+++|+++|+ ++++...+ +.|.+|| ..+.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~~---~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKRP---FVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEEE---EECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEEE---eeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 8899999999998764431 224667899999999998 66766656 6899999 5555432332 244578
Q ss_pred EEEeccCCCCccEEEEEec------cCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 498 YSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
.++++.+ +|.++++... .+.|..|+.+..... .+......+..++|+|+|+.++.+.. .++.|.+||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8999866 5666666543 244555554433322 22222335788999999997765542 3678999998
Q ss_pred CC-CceeeEe------ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCC----CCCcceEEEcCC
Q 001190 572 SE-GTIKRTY------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG----LPNLPRLRFSKE 640 (1128)
Q Consensus 572 ~~-~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~sp~ 640 (1128)
.+ +.....+ .......+..++++++|+.+++...++.|.+||. +++.+..+..... ...+.+++|+||
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 64 3332211 1111125677999999998887778899999998 5666666654321 124789999999
Q ss_pred CCEEEEEEcCC
Q 001190 641 GNLLAVTTADN 651 (1128)
Q Consensus 641 ~~~l~~~~~dg 651 (1128)
+..|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 88887766653
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=2.1e-13 Score=167.89 Aligned_cols=249 Identities=9% Similarity=-0.003 Sum_probs=174.8
Q ss_pred cCCCcceEEEEEccCCCEEEEEeCCC-----eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCe-
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAFTKH-----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~~d~-----~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~- 476 (1128)
.+|...+..++|||||++||.+..++ .|++||+.+|+.+.. .+ ....+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCcc
Confidence 34666799999999999999876543 899999999886542 12 222377899999999 5666666655
Q ss_pred ---------------EEEEe-cCCC----eEEEecCCCCCeEEEeccCCCCccEEEEEec-----cCcEEEEecCC----
Q 001190 477 ---------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYDT---- 527 (1128)
Q Consensus 477 ---------------i~vWd-~~g~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~~wd~~~---- 527 (1128)
|++|+ .++. .+.....|...+..+.|++ ||++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999 5554 2223333555678888866 6788887765 56899999976
Q ss_pred --CC-ceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce--eeEeccccC-CceeEEEEeCCCCEEE
Q 001190 528 --MG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRK-KSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 528 --~~-~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~ 601 (1128)
+. ....+..+...+.. .|+++|+.|+..+........|.+||+.++.. ...+..+.. ..+..++|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 32 34445544444444 48899998888764333356899999988752 344444433 3577788887777777
Q ss_pred EEECCCc--EEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc----CCcEEEEEcccCc
Q 001190 602 AVGEDSQ--IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (1128)
Q Consensus 602 ~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1128)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .+.|+.||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7777874 667787778776777654 346788899999887764433 4789999998764
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=1.4e-13 Score=153.88 Aligned_cols=220 Identities=11% Similarity=0.129 Sum_probs=153.8
Q ss_pred CeeEEEeccCCCeEEEEe-C---Ce--EEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC------------
Q 001190 833 AVPCIALSKNDSYVMSAT-G---GK--ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED------------ 894 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~-d---g~--i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d------------ 894 (1128)
.+..++|||||++|+..+ + +. |.+|++.+++.......+. +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 477899999999998876 2 33 8888998888766554433 99999999 88888877632
Q ss_pred ---------------CcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCC-------cEEEEECCCCcccce
Q 001190 895 ---------------STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA-------QLCVWSIDTWEKRKS 952 (1128)
Q Consensus 895 ---------------g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg-------~i~iwd~~~~~~~~~ 952 (1128)
..|++||+.+++.+..+.. . .+..++|+||| +++++..++ ...||.+++++. ..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~ 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence 5799999998887455554 3 88999999999 877776542 445555554432 22
Q ss_pred eEEeecCCCCCCCccEEEEcCCCCEEEEEe-c--------CeEEEEecCCcccccccccCCCCCCCeEE-EEEeeCCCEE
Q 001190 953 VTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E--------TQLAIYDASKMERIRQWTPQDALSAPISC-AVYSCNSQLV 1022 (1128)
Q Consensus 953 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d--------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~-l~~s~dg~~l 1022 (1128)
+... ..+. .++|||++++... + ..|.+|| +++....... +...+.. +.|+ || ++
T Consensus 213 l~~~-------~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~---~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 213 MFEK-------VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE---VDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp EEEE-------ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT---CCSEEEEEEEET-TE-EE
T ss_pred eccC-------ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc---CCcccCCccEEc-Cc-EE
Confidence 2111 1122 3499999888754 2 3677887 4443332222 2567776 8999 98 88
Q ss_pred EEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcE-EEEcCC
Q 001190 1023 FATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSV-KVMEPS 1092 (1128)
Q Consensus 1023 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i-~iWd~~ 1092 (1128)
++++.++.++|| +.+++...... +...+.+++|+| .++++++.++.. .||.+.
T Consensus 277 ~~~~~~~~~~l~-~~~g~~~~~~~-------------~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWDGEIKPIAK-------------GRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEETTEEEEE-EESSSEEEEEC-------------SSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEecCCcEEEE-EcCCceEEEec-------------CCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 899999999999 88766543333 234567889988 678888888765 777765
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=2.9e-13 Score=150.15 Aligned_cols=274 Identities=13% Similarity=0.132 Sum_probs=184.6
Q ss_pred ccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCC
Q 001190 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 844 (1128)
..+.+++|++++..++..+.++.++.|.-. .|. .+.. +...+.+++|+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~---------~~~~--~~~~~~~~~~~~~g~ 57 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-----------------PWL---------EISK--KGLQLEGLNFDRQGQ 57 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-----------------EEE---------EEES--SCCCEEEEEECTTSC
T ss_pred cccceeeecCCccceeEEeecccCcccccc-----------------eeE---------EEec--cCccccCcEECCCCC
Confidence 456778888888877777777788877211 000 0111 445678999999999
Q ss_pred eEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC----CcEEEEecccceeeeccc--ccccC
Q 001190 845 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED----STIHIYNVRVDEVKSKLK--GHQKR 917 (1128)
Q Consensus 845 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~~~~l~--~h~~~ 917 (1128)
+++++. ++.|.+||..+++.......+...+.++++++ +++++++...+ +.|.+||..+++....+. .+...
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 136 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC 136 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence 877776 78899999998887665545667899999999 88888877766 689999998776542322 24457
Q ss_pred eeEEEEcCCCCEEEEEcC------CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEE
Q 001190 918 ITGLAFSTSLNILVSSGA------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIY 989 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~ 989 (1128)
+.+++++|+|+++++... .+.|..||..+++..... ... ..+..++|+|||+.++++. ++.|.+|
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~------~~~~~i~~~~dg~~l~v~~~~~~~i~~~ 209 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNI------SVANGIALSTDEKVLWVTETTANRLHRI 209 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEE------SSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCC------CcccceEECCCCCEEEEEeCCCCeEEEE
Confidence 899999999998887654 245555665554432211 111 3467899999999776654 6899999
Q ss_pred ecCC-ccccccc-----ccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccc
Q 001190 990 DASK-MERIRQW-----TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1063 (1128)
Q Consensus 990 d~~~-~~~~~~~-----~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1128)
+..+ +..+..+ ..... ...+..++++++|+++++...++.|.+||. +++.+..+..... ..++...
T Consensus 210 d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~------~~g~~~~ 281 (333)
T 2dg1_A 210 ALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR------DEGHMLR 281 (333)
T ss_dssp EECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG------GGTCSCB
T ss_pred EecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC------ccccccC
Confidence 9964 3332211 01111 246788999999998887777899999998 5666666542100 0011225
Q ss_pred eEEEEEecCCCCEEEEEECC
Q 001190 1064 PLVVAAHPLEPNQFAIGLTD 1083 (1128)
Q Consensus 1064 ~~~~~~~p~~~~~l~s~~~d 1083 (1128)
+.+++|+| |++.|..++.+
T Consensus 282 ~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 282 STHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp CCEEEECT-TSCEEEEEEEC
T ss_pred cceEEECC-CCCEEEEEeCc
Confidence 67899998 56566555544
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=9e-14 Score=153.15 Aligned_cols=243 Identities=12% Similarity=0.054 Sum_probs=177.9
Q ss_pred CCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 832 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
.....+++. +++++++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 446677774 344444444 7899999999999988885 346788999988 776666655899999999999988766
Q ss_pred ccccc-----cCeeEEEEcCCCCEEEEEc-CCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-c
Q 001190 911 LKGHQ-----KRITGLAFSTSLNILVSSG-ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E 983 (1128)
Q Consensus 911 l~~h~-----~~V~~l~~s~d~~~l~s~~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d 983 (1128)
+.... .....+++ .+++.+++.. .++.|.+||+.+++....+... .....++++|+|++++++. +
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-------~~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-------IQPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-------SCBCCCEECTTSEEEEEBCCB
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-------CCccceEEcCCCCEEEEECCC
Confidence 65433 14556777 4444445443 4889999999998766554332 3456789999999777754 3
Q ss_pred ----------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCC
Q 001190 984 ----------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1053 (1128)
Q Consensus 984 ----------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1053 (1128)
+.|.++|..+++....+.... ......++|+||+++|+++.. .|.+||+.+++...... ..
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~----~~- 263 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF----LE- 263 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS----BC-
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee----ec-
Confidence 689999999988776665432 346889999999999998765 89999999988631110 00
Q ss_pred cccCCCCccceEEEEEecCCCCEEEEE----ECCCcEEEEcCCCCCCCccc
Q 001190 1054 SVLNGSQTVYPLVVAAHPLEPNQFAIG----LTDGSVKVMEPSESEGKWGV 1100 (1128)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~p~~~~~l~s~----~~dg~i~iWd~~~~~~~w~~ 1100 (1128)
.....+.+++++|++++++++. ..++.|.+||.. ++..|..
T Consensus 264 -----~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 264 -----FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp -----CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred -----CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 1134578899999778888887 788999999998 7765544
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=8.9e-13 Score=143.29 Aligned_cols=244 Identities=7% Similarity=-0.010 Sum_probs=175.4
Q ss_pred eecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001190 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1128)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1128)
...+.....+++|+|+|+.+++++..++.|..||..++ . .. +..+...+.+++++|+|+
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~-------------------~~~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SP-------------------EMHPSHHQNGHCLNKQGH 81 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EE-------------------EESSCSSEEEEEECTTCC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EE-------------------EECCCCCcceeeECCCCc
Confidence 33466778999999999867888889999999999876 2 21 344667899999999999
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeeccc-ccceeEEEEecCCCeEEEEE----ec-------------CCCeEEEEe
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVT----CG-------------DDKLIKVWE 481 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~fs~d~~~~~l~s----~s-------------~d~~i~vWd 481 (1128)
++++...++.|.+||..+++.........+. ...+.+++++|+|+ ++++ |+ ..+.|..++
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEEC
Confidence 8887777789999999887643321111111 23578899999998 6676 33 134666666
Q ss_pred cCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecC-CCCc---eeeecCCCCeEEEEEEcCCCCeEEEee
Q 001190 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGS---RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1128)
Q Consensus 482 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~---~~~~~~~~~~i~~~~~s~~g~~l~~~~ 557 (1128)
..++ +..+..+......++|++ +++.+++.+.++.|.+|+++ .+.. ...+......+..++++++|++.++.
T Consensus 160 ~~g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 160 PDGT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA- 235 (296)
T ss_dssp TTSC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred CCCC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence 4454 445556667788999966 66777777888999999987 3332 12233334456789999999866654
Q ss_pred eccCCCceEEEEeCCCCceeeEeccccCCceeEEEE-eCCCCEEEEEECCCcEEEEECCCCee
Q 001190 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1128)
Q Consensus 558 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s~dg~i~iwd~~~~~~ 619 (1128)
++.|.+||.. ++.+..+..+.. +.+++| +++++.|++++.+ .+..++..+.++
T Consensus 236 -----~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 -----GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp -----TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred -----CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 4679999986 777777776654 778889 5888889888875 455666666554
No 188
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=5e-09 Score=130.29 Aligned_cols=593 Identities=11% Similarity=0.081 Sum_probs=331.4
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
...|+++.-.++|... .|+.+| +..||-. .. +.+.... .+... ..-....|.++...++|..|-.
T Consensus 18 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~---~f-----~~~~~~~--~~~~~--~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGFLW--FATEEG-LNKFDGT---RF-----ITYYKEE--QSSSV--QSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSCEE--EEESSC-EEEECSS---SE-----EEECCCS--SCSSS--CCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCCEE--EccCCc-CccccCC---ce-----EEEEcCC--CCCcc--ccccccccceEEEcCCCCEEEE
Confidence 3579999999999733 455565 5566632 11 1111100 00000 0002356999999998884555
Q ss_pred EeCCCeEEEEEccCCCcceecee-ecc---cccceeEEEEec--CCCeEEEEEecCCCeEEEEecCCCeEEEecC-----
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQ-IDA---HVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWELSGRKLFNFEG----- 492 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~-~~~---h~~~v~~l~fs~--d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~----- 492 (1128)
|+.++.+..||..+++....... ... ....|.++.... +|. |..++.++.|..+|........+..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77775689999887653221000 000 123688888877 665 4445545568889933333333321
Q ss_pred -CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee-------cCCCCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 493 -h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-------~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
....|.++.... ++ .|..++.++-+..||.......... ......|.++...++|.+.+... .
T Consensus 160 l~~~~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~- 230 (781)
T 3v9f_A 160 LPSEQTWTATEAE--DG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K- 230 (781)
T ss_dssp CSCCCEEEEEEEE--TT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-
T ss_pred CCccceEEEEECC--CC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-
Confidence 134577776532 43 5666776656888887654332211 11234689999988887666542 3
Q ss_pred eEEEEeCCCCceeeEecc------ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe-------cC-----
Q 001190 565 FLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-------AE----- 626 (1128)
Q Consensus 565 ~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------~~----- 626 (1128)
-+.+||..+++....... .....|.++....+| .|..|+..+.|.++|..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 589999877654432211 122357777777665 46667776778999987765432211 00
Q ss_pred CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceeccc
Q 001190 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~ 706 (1128)
-....|.++...++|. |.+|+.++-|..++..+.. +..... .+...
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~---------------~~~~~---------------- 355 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSY---------------SPTQM---------------- 355 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC-------------------CC----------------
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeecc---------------Ccccc----------------
Confidence 1123577888887775 4556666667777654331 110000 00000
Q ss_pred CCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccc
Q 001190 707 SPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1128)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 786 (1128)
.........|.++...++|. |..++.++
T Consensus 356 ---------------------------------------------------~~~~l~~~~v~~i~~d~~g~-lWigt~~~ 383 (781)
T 3v9f_A 356 ---------------------------------------------------NESSLSNKVVSSVCDDGQGK-LWIGTDGG 383 (781)
T ss_dssp ---------------------------------------------------CSSCCSSSCEEEEEECTTSC-EEEEEBSS
T ss_pred ---------------------------------------------------ccCCCCCcceEEEEEcCCCC-EEEEeCCC
Confidence 00000234577888888777 44455455
Q ss_pred eeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEE
Q 001190 787 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMT 866 (1128)
Q Consensus 787 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~ 866 (1128)
-+..|+...... +.+. ... . .....|.+++..++|.+.+...++.|..++..+++...
T Consensus 384 Gl~~~~~~~~~~------------~~~~-~~~-------~--~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~ 441 (781)
T 3v9f_A 384 GINVFENGKRVA------------IYNK-ENR-------E--LLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQI 441 (781)
T ss_dssp CEEEEETTEEEE------------ECC---------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEE
T ss_pred cEEEEECCCCeE------------EEcc-CCC-------C--CCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEE
Confidence 566665322110 0000 000 0 13467899999888887775546779999988776543
Q ss_pred Eee--CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccccc-----ccCeeEEEEcCCCCEEEEEcCCCcE
Q 001190 867 TFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH-----QKRITGLAFSTSLNILVSSGADAQL 939 (1128)
Q Consensus 867 ~~~--~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~~~Dg~i 939 (1128)
... .....|.++...+ ++.+.+ |+. +-|..||..+++........ ...|.++...++|.+.+....+| |
T Consensus 442 ~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l 517 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-V 517 (781)
T ss_dssp CCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-E
T ss_pred eccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-E
Confidence 221 1345789999887 666554 555 56899998876543222111 36789999999998777544345 7
Q ss_pred EEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeE-EEEecCCcccccccccCCC-CCCCeEEEEEee
Q 001190 940 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL-AIYDASKMERIRQWTPQDA-LSAPISCAVYSC 1017 (1128)
Q Consensus 940 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i-~v~d~~~~~~~~~~~~~~~-h~~~v~~l~~s~ 1017 (1128)
..||..+++... .....+-....+.++...++|.+.+++. +.+ ..||..+++.. .+....+ ....|.++...+
T Consensus 518 ~~~~~~~~~~~~---~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~ 592 (781)
T 3v9f_A 518 GIYTPDMQLVRK---FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDK 592 (781)
T ss_dssp EEECTTCCEEEE---ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECS
T ss_pred EEEeCCCCeEEE---ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE-EccccCCCCCceEEEEEECC
Confidence 778877654211 1111222235678899999998777666 455 88888766432 2221111 135678898888
Q ss_pred CCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1018 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1018 dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
+|++.++ +.+| |..|+..+++... +.....+. ...-...++...+ ++ .|..|+.+|- ..+++..
T Consensus 593 ~g~lW~~-t~~G-l~~~~~~~~~~~~-~~~~dGl~------~~~f~~~~~~~~~-~G-~l~~g~~~Gl-~~f~p~~ 656 (781)
T 3v9f_A 593 NGNIWAS-TNTG-ISCYITSKKCFYT-YDHSNNIP------QGSFISGCVTKDH-NG-LIYFGSINGL-CFFNPDI 656 (781)
T ss_dssp SSCEEEE-CSSC-EEEEETTTTEEEE-ECGGGTCC------SSCEEEEEEEECT-TS-CEEEEETTEE-EEECSCC
T ss_pred CCCEEEE-cCCc-eEEEECCCCceEE-ecccCCcc------ccccccCceEECC-CC-EEEEECCCce-EEEChhh
Confidence 8986554 4444 8888988765533 32111111 1111123444444 44 4666777784 5567654
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.58 E-value=2.3e-13 Score=166.99 Aligned_cols=246 Identities=9% Similarity=-0.066 Sum_probs=166.1
Q ss_pred cCCCcceEEEEEccCCCEEEEE-----eCCCeEEEEEccCCCcceeceeecccccce--eEEEEecCCCeEEEEEecCCC
Q 001190 403 KDVPISVSRVAWSPDGNYVGVA-----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAV--NDLAFAYPNKLLCVVTCGDDK 475 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~-----~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v--~~l~fs~d~~~~~l~s~s~d~ 475 (1128)
.+|...+..++|||||++||.+ +.+..|++||+.+|+.+.. .+...+ ..++|+|||+ .|+.++.|.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~~~~~~~~~wspDg~--~l~~~~~d~ 189 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----DVIEGGKYATPKWTPDSK--GFYYEWLPT 189 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----CCBSCCTTCCCEECTTSS--EEEEEECCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----cccCcccccceEEecCCC--EEEEEEecC
Confidence 4677789999999999999944 4456899999999986511 122222 6899999999 677777776
Q ss_pred e-------------EEEEe-cCCC----eEEEecCCCCCeEEEeccCCCCccEEEEEeccC----cEEEEecCCCCceee
Q 001190 476 L-------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG----KIKAWLYDTMGSRVD 533 (1128)
Q Consensus 476 ~-------------i~vWd-~~g~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~~ 533 (1128)
. |++|+ .++. ++.....|...+.++.|++ ||++|+.++.++ .|.+|+...+. ...
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~ 266 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKD-FRL 266 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSS-CEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCc-eEE
Confidence 6 99999 5554 3334445666788888876 667888777666 66666554433 333
Q ss_pred ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce---eeEeccccCCceeEEEEeCCCCEEEEEECCCcEE
Q 001190 534 YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (1128)
Q Consensus 534 ~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~ 610 (1128)
+..+...+....+ ++|. ++..+.....++.|.+||+.+++. ...+..+....+..++++ ++..+++...|+..+
T Consensus 267 l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 267 LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 4444444555555 6777 555543222468999999988753 333333324457778887 566777788898888
Q ss_pred EEECC-CCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc----CCcEEEEEcccCc
Q 001190 611 FWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (1128)
Q Consensus 611 iwd~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1128)
+|.+. ++.....+..+. ...+..++++|++..++.... .++|++||+.++.
T Consensus 344 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 87654 355455554331 335778889999987774433 4789999998764
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=2.7e-13 Score=144.37 Aligned_cols=251 Identities=9% Similarity=0.042 Sum_probs=184.3
Q ss_pred cCCCeEEEEe-CCeEEEEECCCceEEEEeeCCC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-cC
Q 001190 841 KNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KR 917 (1128)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~-~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~ 917 (1128)
..+++|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +++.+.++..+. ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 3457777777 8999999999999999998776 4789999999 899888 45788999998 899888887653 47
Q ss_pred eeEEEEcCCCCEEEEEcC-CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcc
Q 001190 918 ITGLAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKME 995 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~ 995 (1128)
+.++.+.+||+++++.+. ++.|..+|. +|+.+..+...............+++.++|.++++.. ++.|.+||.. |+
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 889999999999998877 777877775 5666555544321111113455678899999998874 8999999998 98
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC
Q 001190 996 RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1075 (1128)
Q Consensus 996 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1075 (1128)
.+..+... ..+.++.+.++|++++++..++.|..+|..+|+.+..+..... . ...-.++..++..+ +++
T Consensus 157 ~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~-----~~~l~~~~~~~~~~-~G~ 225 (276)
T 3no2_A 157 LLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-E-----GVQLFFVAQLFPLQ-NGG 225 (276)
T ss_dssp EEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-B-----SCCCSEEEEEEECT-TSC
T ss_pred EEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-C-----CccccccccceEcC-CCC
Confidence 88877653 3456778889999999888888999999999999998862110 0 01123467777777 688
Q ss_pred EEEEEECC--------CcEEEEcC-CCCCCCcccCCCCCCCc
Q 001190 1076 QFAIGLTD--------GSVKVMEP-SESEGKWGVSPPVDNGI 1108 (1128)
Q Consensus 1076 ~l~s~~~d--------g~i~iWd~-~~~~~~w~~~~p~~~~~ 1108 (1128)
++++.+.. +..+++++ .+++..|.-....+-|.
T Consensus 226 i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~ 267 (276)
T 3no2_A 226 LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGM 267 (276)
T ss_dssp EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCC
T ss_pred EEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccc
Confidence 88777421 13345555 46666676554444443
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=9.5e-13 Score=140.18 Aligned_cols=243 Identities=11% Similarity=0.070 Sum_probs=178.5
Q ss_pred EEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCC-cceEEEEEccCCCEEEEEeCCCeEEEEEccC
Q 001190 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1128)
Q Consensus 359 lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~i~vwd~~~ 437 (1128)
+|++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 789999999999999999998754 33343 4688999999999998 45778999999 7
Q ss_pred CCcceeceeeccc-ccceeEEEEecCCCeEEEEEecC-CCeEEEEecCCCeEEEecC------CCCCeEEEeccCCCCcc
Q 001190 438 SNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWELSGRKLFNFEG------HEAPVYSICPHHKENIQ 509 (1128)
Q Consensus 438 ~~~~~~~~~~~~h-~~~v~~l~fs~d~~~~~l~s~s~-d~~i~vWd~~g~~~~~~~~------h~~~v~~~~~~~~~~~~ 509 (1128)
|+.+.. +..+ ...+.++.+.+||+ ++++.+. ++.|..+|.+|+.+..+.. +......+++ ..+|.
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~ 137 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK--NKKGN 137 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE--CTTSC
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE--CCCCC
Confidence 876664 3333 34688999999999 6777766 7788888888988877642 1122333444 34778
Q ss_pred EEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccC----
Q 001190 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---- 585 (1128)
Q Consensus 510 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---- 585 (1128)
++++...++.|..||.+ ++....+.... .+.++.+.++|+.++++. .++.|..+|..+|+.+.++.....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~----~~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACG----DAHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECB----TTSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeC----CCCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 99999999999999987 88888777653 455677889999988876 366899999999999998874321
Q ss_pred -CceeEEEEeCCCCEEEEEECC--------CcEEEEEC-CCCeeeEEEecCCCCCCcceEE
Q 001190 586 -KSNGVVQFDTTQNHFLAVGED--------SQIKFWDM-DNVNILTSTDAEGGLPNLPRLR 636 (1128)
Q Consensus 586 -~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 636 (1128)
..+..++..++|+.+++.... +..+++.+ .+++.+..+........+..++
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 125667788888887776421 13345554 4777777776655555555543
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=4.2e-13 Score=165.28 Aligned_cols=248 Identities=8% Similarity=-0.015 Sum_probs=169.7
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccC----eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
|...+..++|||||++++.+.+.+| .|++||+.+|+.+.. .+. ...+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~--~~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLE--RVKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEE--EECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------ccc--CcccceEEEEeCC
Confidence 4446889999999995444433333 899999999886531 011 1236789999999
Q ss_pred CEEEEEeCCCe----------------EEEEEccCCCcce-eceeecccccceeEEEEecCCCeEEEEEecC-----CCe
Q 001190 419 NYVGVAFTKHL----------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKL 476 (1128)
Q Consensus 419 ~~las~~~d~~----------------i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~-----d~~ 476 (1128)
+.|+.++.++. |++|++.+++... .......|...+..+.|+|||+. |+.++. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999988765 9999998876321 11122235666889999999995 443332 578
Q ss_pred EEEEe-cC------CC-eEEEecCCCCCeEEEeccCCCCccEEEEEecc----CcEEEEecCCCCc--eeeecCCCC--e
Q 001190 477 IKVWE-LS------GR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGS--RVDYDAPGH--W 540 (1128)
Q Consensus 477 i~vWd-~~------g~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~--~~~~~~~~~--~ 540 (1128)
|.+|| .+ +. ....+..+...+... |++ +|..|+..+.+ +.|.+||+.+... ...+..+.. .
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 99999 54 43 456677776666553 544 45566555443 3699999877642 233444433 6
Q ss_pred EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE----CCCcEEEEECCC
Q 001190 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDN 616 (1128)
Q Consensus 541 i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~ 616 (1128)
+..+++++++.++++... ++...|++|++.+++.+..+..+. ..+..+.++++++.++... ..+.|+.||+.+
T Consensus 338 ~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~-~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC-ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 888999876666666553 234467888987888777777763 3677888999987776543 457899999988
Q ss_pred Ce
Q 001190 617 VN 618 (1128)
Q Consensus 617 ~~ 618 (1128)
++
T Consensus 415 g~ 416 (710)
T 2xdw_A 415 EE 416 (710)
T ss_dssp SS
T ss_pred Cc
Confidence 77
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=1.6e-11 Score=133.65 Aligned_cols=281 Identities=9% Similarity=0.080 Sum_probs=191.6
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
+...+.+++++++|...++...++.|..|+.. +......... ....+..++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--PDAKVMCLTISSD 67 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--ccCceeeEEECCC
Confidence 55789999999999977776667888888643 1111101111 3456889999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceEE-EEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee-cccccccCee
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVM-TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-KLKGHQKRIT 919 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~-~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V~ 919 (1128)
|.++++.. ++.|..||.. ++.. ..+......+..+++++ +++++++...++.|.+||. +++... ....+...+.
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~ 144 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS 144 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence 99888776 6889999986 3332 22223455789999999 8888888777899999998 554332 2233456789
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccc
Q 001190 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 920 ~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
++++.++|+++++...++.|..||. +++... .... . ....+..++++++|.+.++.. ++.|.+|+. +++...
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~ 217 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIP-T-PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE 217 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECS-S-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCC-C-CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE
Confidence 9999999998888877889999998 554322 1111 1 124577899999999766653 788999998 655332
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
+... .+...+.+++++++|+++++...++.|.+||. +++.. .+... .+...+.++++ + ++.+++
T Consensus 218 -~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~----------~~~~~~~~i~~-~-~g~l~v 281 (299)
T 2z2n_A 218 -FKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPIQ----------IKSAEPHGICF-D-GETIWF 281 (299)
T ss_dssp -EECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEECS----------SSSCCEEEEEE-C-SSCEEE
T ss_pred -EECC-CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeCC----------CCCCccceEEe-c-CCCEEE
Confidence 2221 12577899999999996666657889999998 55533 32211 12234678888 6 577766
Q ss_pred EEECCCcEEEEcCCCCC
Q 001190 1079 IGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1079 s~~~dg~i~iWd~~~~~ 1095 (1128)
+.+ .+.+..+++.+.+
T Consensus 282 ~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 282 AME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EET-TTEEEEEEEC---
T ss_pred Eec-CCcEEEEEcCccc
Confidence 655 5677777776654
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=1.2e-13 Score=169.62 Aligned_cols=249 Identities=6% Similarity=-0.074 Sum_probs=162.4
Q ss_pred CCCcEEEEEEeCCCCcEEEE----eeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 343 QGSTVISMDFHPSHQTLLLV----GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~----gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
|...+.+++|||||++++++ |+.+..|++||+.+|+.+... .+.+. ....++|||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-----------------~~~~~--~~~~~~wspDg 179 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-----------------VIEGG--KYATPKWTPDS 179 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-----------------CBSCC--TTCCCEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-----------------ccCcc--cccceEEecCC
Confidence 55579999999999955443 333468999999998864110 01111 12678999999
Q ss_pred CEEEEEeCCCe-------------EEEEEccCCCcc-eeceeecccccceeEEEEecCCCeEEEEEecCCC----eEEEE
Q 001190 419 NYVGVAFTKHL-------------IQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK----LIKVW 480 (1128)
Q Consensus 419 ~~las~~~d~~-------------i~vwd~~~~~~~-~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~----~i~vW 480 (1128)
+.|+.++.|.. |++|++.++..- ........|...+..+.|+|||+. |+.++.++ .|.+|
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYWK 257 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEEE
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEEE
Confidence 99999988776 999999987632 122223346678899999999995 44444444 67777
Q ss_pred ecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEe---ccCcEEEEecCCCCc---eeeecCC-CCeEEEEEEcCCCCeE
Q 001190 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAP-GHWCTTMLYSADGSRL 553 (1128)
Q Consensus 481 d~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~---~~~~~~~-~~~i~~~~~s~~g~~l 553 (1128)
|..+.....+..+...+....+ + +|.+++... .++.|.+||++++.. ...+..+ ...+..++++ ++.++
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 258 RPGEKDFRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp CTTCSSCEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred cCCCCceEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 7333344555556655666555 2 444444443 258899999977653 2223322 4568888887 55555
Q ss_pred EEeeeccCCCceEEEEeCC-CCceeeEeccccCCceeEEEEeCCCCEEEEEE----CCCcEEEEECCCCeee
Q 001190 554 FSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~~ 620 (1128)
++... ++..++|.+. +++....+..+....+..++++++++.++... ..+.|++||+.+++..
T Consensus 334 ~~~~~----dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 334 LEYLK----DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEE----TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEE----CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 55543 5555555443 35555666655344677788889988777543 3578999999988743
No 195
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=2e-12 Score=140.50 Aligned_cols=236 Identities=11% Similarity=0.057 Sum_probs=167.2
Q ss_pred ccCCCcceEEEEEccCCC-EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 555667788999999998 7778888999999999986 33 3556777899999999999 67777777899999
Q ss_pred e-cCCCeEEEecCC----CCCeEEEeccCCCCccEEEEE----ec-------------cCcEEEEecCCCCceeeecCCC
Q 001190 481 E-LSGRKLFNFEGH----EAPVYSICPHHKENIQFIFST----AI-------------DGKIKAWLYDTMGSRVDYDAPG 538 (1128)
Q Consensus 481 d-~~g~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~----~~-------------dg~i~~wd~~~~~~~~~~~~~~ 538 (1128)
| .+|+........ ...+..+++.+ +|.++++. +. .+.| |.++.......+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l--~~~~~~g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWV--FRLAPDGTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEE--EEECTTSCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEE--EEECCCCCEEEeecCC
Confidence 9 588754433221 12456788865 67777763 21 2344 4444434444445555
Q ss_pred CeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCC-CCce---eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 539 ~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
.....++|+|+|+.+++.. .++.|++|++. +++. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 6788999999999984443 47889999987 5554 3444 2233356679999999866655 889999998
Q ss_pred CCCeeeEEEecCCCCCCcceEEE-cCCCCEEEEEEcCCcEEEEEccc
Q 001190 615 DNVNILTSTDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~-sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 6 777777765432 788999 58999999988763 33334433
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=2.3e-11 Score=132.40 Aligned_cols=282 Identities=9% Similarity=-0.054 Sum_probs=193.2
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+...+.+++++|+|+ ++++...++.|.+||.. ++.... .+..+...+.+++++++|.+++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 456899999999998 55655557899999987 543210 0222456799999999999888
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEE-ecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~-~~~h~~~v~~~~ 501 (1128)
+...++.|..||.+ ++ +... .+......+.++++.++|. +.++...++.|.+||.+++.... ...+...+..++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE
Confidence 87778899999986 33 2221 2223456789999999998 67777778899999975554432 233455688888
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCceee-ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
+.+ ++.+.++...++.|..||. ++..... .......+..++++++|+..++.. ..+.|.+||. +++.....
T Consensus 148 ~~~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 148 LGS--DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITEFK 219 (299)
T ss_dssp ECT--TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEEE
T ss_pred EcC--CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEEEE
Confidence 865 5667776667789999988 4433322 233345688999999998666543 3678999998 66644321
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
.......+..++++++|+.+++...++.|.+||. +++. ..+....+...+.++++ +++.++++.. .+.+..++..+
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 2212235788999999886665557889999998 4543 33333333346789999 8887766654 56677777654
Q ss_pred C
Q 001190 661 G 661 (1128)
Q Consensus 661 ~ 661 (1128)
+
T Consensus 296 ~ 296 (299)
T 2z2n_A 296 D 296 (299)
T ss_dssp -
T ss_pred c
Confidence 3
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=1.3e-12 Score=140.02 Aligned_cols=239 Identities=8% Similarity=0.014 Sum_probs=168.3
Q ss_pred CeeEEEeccCCCeEE-EEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 833 AVPCIALSKNDSYVM-SAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la-~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999777 434 68899999866543322223345688999999 788776666 88999999876544322
Q ss_pred ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEE
Q 001190 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIY 989 (1128)
Q Consensus 911 l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~ 989 (1128)
.......+.+++++++|+++++...++.|.+|+..+...... ... ....+..++++++|+++++.. ++.|.+|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-----~~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-----PFT-GLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-----CCC-SCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-----ccc-cCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 223335688999999999888888888999997655432111 111 114578899999998666654 6899999
Q ss_pred ecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEE
Q 001190 990 DASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1069 (1128)
Q Consensus 990 d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1128)
+............. ...+.+++++++|+++++...++.|.+|+........ .. ..+...+.++++
T Consensus 177 ~~~~~~~~~~~~~~---~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----------~~~~~~p~~i~~ 241 (270)
T 1rwi_B 177 EAESNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----------FTGLNTPLAVAV 241 (270)
T ss_dssp CTTTCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----------CCSCSCEEEEEE
T ss_pred ecCCCceEeecccC---CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----------cCCCCCceeEEE
Confidence 98766543322221 3678999999999877777778899999987654432 11 122245688999
Q ss_pred ecCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1070 HPLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1070 ~p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
++ +++++++...+++|+++++...+
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 99 58899999999999999988765
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=1.3e-12 Score=143.99 Aligned_cols=268 Identities=11% Similarity=0.004 Sum_probs=183.4
Q ss_pred ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceec
Q 001190 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444 (1128)
Q Consensus 365 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~ 444 (1128)
.+++|.+||.++++........ .--.........+++. +++..++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~-------------~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYR-------------ANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHH-------------HHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhhHhh-------------hcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 4889999999998865321000 0001122346677774 455555666689999999999987664
Q ss_pred eeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCC-----CCeEEEeccCCCCccEEEEEe--c
Q 001190 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE-----APVYSICPHHKENIQFIFSTA--I 516 (1128)
Q Consensus 445 ~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~--~ 516 (1128)
+. .......++++++++ +.++...++.|.+|| .+++....+.... .....+++ . ++ .++++. .
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~-~lyv~~~~~ 150 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GK-YVYVNCWSY 150 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TT-EEEEEECTT
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CC-EEEEEcCCC
Confidence 32 346688999999985 566665789999999 7787776665333 13455666 2 33 444444 4
Q ss_pred cCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCC------CceEEEEeCCCCceeeEeccccCCceeE
Q 001190 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG------DSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1128)
Q Consensus 517 dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 590 (1128)
++.|.+||..+.+....+... .....++++|+|++++++....++ .+.|.++|..+++....+..........
T Consensus 151 ~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~ 229 (328)
T 3dsm_A 151 QNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSE 229 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEE
T ss_pred CCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCcee
Confidence 899999999887766665543 345688999999877666421000 2789999999999887776443335778
Q ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcC-CCCEEEEE----EcCCcEEEEEcc
Q 001190 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVT----TADNGFKILANA 659 (1128)
Q Consensus 591 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~----~~dg~i~iw~~~ 659 (1128)
++++|++++++++.. .|++||..+++................++++| ++.++++. ..++.|.+|+..
T Consensus 230 la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 999999999988765 89999998887642111111123568899999 55555555 467899999987
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=1.9e-11 Score=136.07 Aligned_cols=202 Identities=10% Similarity=0.020 Sum_probs=141.1
Q ss_pred eeEEEeccCCCeEEEEe---CCeEEEEECCCceEEEE-eeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee
Q 001190 834 VPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 909 (1128)
...++++|||++|+++. ++.|.++| .+++.+.+ +.... ++.+.|.+.+.+++.+.||.+.+++. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 34688999999988875 36799999 99998877 64322 24555645567777888999999999 876653
Q ss_pred ccc-----ccccCe-eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecC------CCCCCCccEEEEcCCCCE
Q 001190 910 KLK-----GHQKRI-TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVR 977 (1128)
Q Consensus 910 ~l~-----~h~~~V-~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~ 977 (1128)
... ....++ ....+.+++..++..+.++.+.+.|+.++............ .........++++||++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 221 111222 23456777665555557789999999765322111111110 001123344889999998
Q ss_pred EEEEe-----------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCC-EEEEEe-cCCcEEEEecCCCceEEE
Q 001190 978 MLVVH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCY 1044 (1128)
Q Consensus 978 l~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~ 1044 (1128)
+.+.. .+.|.++|..+++.+..+.. .....+++|+|||+ +++++. .++.|.|||+.+++.+..
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~----g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC----CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 88753 25799999999999888865 45688999999999 777777 589999999999999988
Q ss_pred e
Q 001190 1045 I 1045 (1128)
Q Consensus 1045 ~ 1045 (1128)
+
T Consensus 357 i 357 (373)
T 2mad_H 357 T 357 (373)
T ss_pred e
Confidence 4
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=3.8e-12 Score=138.88 Aligned_cols=205 Identities=11% Similarity=0.126 Sum_probs=143.4
Q ss_pred eeEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc-ceeee
Q 001190 834 VPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKS 909 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~ 909 (1128)
...++|+|||+++.++. ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 44688999999888775 4789999999999999886432 1 223333 566777888899999998876 55432
Q ss_pred ccccc----ccCee-EEEEc-CCCCEEEEEcCCCcEEEEECCCCcccceeEEee------cCCCCCCCccEEEEcCCCCE
Q 001190 910 KLKGH----QKRIT-GLAFS-TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI------PAGKTPTGDTRVQFNADQVR 977 (1128)
Q Consensus 910 ~l~~h----~~~V~-~l~~s-~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~v~~v~~s~d~~~ 977 (1128)
....+ ..++. ...|. ++|++++ .+.+|.|.+.|+.++.......... ..+........+++++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ 293 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 293 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCe
Confidence 11111 12222 24564 6776555 5568999999998765321111110 01111134556888999998
Q ss_pred EEEEe-----------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCC-EEEEEe-cCCcEEEEecCCCceEEE
Q 001190 978 MLVVH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCY 1044 (1128)
Q Consensus 978 l~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~ 1044 (1128)
+++.. .+.|.++|+.+++.+..+.. ..++..++|++|++ +|+++. .++.|.|+|..+++.+.+
T Consensus 294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 88853 25799999999999998887 45788999999997 677654 589999999999999999
Q ss_pred eCC
Q 001190 1045 IAP 1047 (1128)
Q Consensus 1045 ~~~ 1047 (1128)
+..
T Consensus 370 i~~ 372 (386)
T 3sjl_D 370 VNQ 372 (386)
T ss_dssp ECC
T ss_pred ecC
Confidence 983
No 201
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=2.4e-12 Score=137.77 Aligned_cols=240 Identities=7% Similarity=-0.062 Sum_probs=166.5
Q ss_pred cEEEEEEeCCCCcEEE-EeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 346 TVISMDFHPSHQTLLL-VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla-~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
...+++++|+|+ +++ +.+.++.|.+||..++..... ...+...+.+++++|+|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 666 556788999999765443210 12233567899999999966665
Q ss_pred eCCCeEEEEEccCCCcceeceeec-ccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEec
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~ 502 (1128)
. ++.|.+||..++.... +. .....+.++++.++|. ++++...++.|.+|+ .+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987754321 21 2335789999999998 677777788999998 444433322233345678888
Q ss_pred cCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc
Q 001190 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1128)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1128)
.+ ++.++++...++.|.+|+.+..............+..++++++|...++.. .++.|.+|+........ ...
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEE-CCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCccee-ecc
Confidence 65 567777777788999999876554433333335688999999996665543 36789999987654433 222
Q ss_pred ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee
Q 001190 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1128)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~ 619 (1128)
.....+..++++++|+.+++...++.|+++++...+.
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 1213578899999998778888899999999876543
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=6.2e-12 Score=137.19 Aligned_cols=300 Identities=12% Similarity=0.068 Sum_probs=196.3
Q ss_pred CCCCccEEEEEec-----cCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeec------cCCCceEEEEeCC
Q 001190 504 HKENIQFIFSTAI-----DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNES 572 (1128)
Q Consensus 504 ~~~~~~~l~s~~~-----dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~------~~~~~~i~~wd~~ 572 (1128)
+.++++.+++... ++.|.+.|..+.+....+.....+ . ++++|||++++++... +..++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4567778888765 679999999988887777655555 4 9999999998876521 0125679999999
Q ss_pred CCceeeEecccc------CCceeEEEEeCCCCEEEEEEC--CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEE
Q 001190 573 EGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 573 ~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 644 (1128)
+++.+.++.... ......+.|+|||++++++.. ++.|.++|+.+++.+..+...+. ...+....+.+
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~~ 192 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDTF 192 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeecCCCcee
Confidence 999988875422 123556899999999998874 68999999999999998875431 12232344566
Q ss_pred EEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCC
Q 001190 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRS 724 (1128)
Q Consensus 645 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1128)
++.+.||.+.+.++.+......... .
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~-~----------------------------------------------------- 218 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHT-E----------------------------------------------------- 218 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEEC-C-----------------------------------------------------
T ss_pred EEECCCCCEEEEECCCCCeEEEeec-c-----------------------------------------------------
Confidence 6777788887777654211100000 0
Q ss_pred CCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCce
Q 001190 725 MDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKA 804 (1128)
Q Consensus 725 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~ 804 (1128)
+.
T Consensus 219 -----------------------------------------------------------------~~------------- 220 (386)
T 3sjl_D 219 -----------------------------------------------------------------VF------------- 220 (386)
T ss_dssp -----------------------------------------------------------------CC-------------
T ss_pred -----------------------------------------------------------------ee-------------
Confidence 00
Q ss_pred eeeeccceeccCCCccccccccCCCCCCCe-eEEEe-ccCCCeEEEEeCCeEEEEECCCce--EEEEee---------C-
Q 001190 805 TASAVPQHWLPSSGLLMANDVAGVNLEEAV-PCIAL-SKNDSYVMSATGGKISLFNMMTFK--VMTTFM---------S- 870 (1128)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~-s~dg~~la~~~dg~i~vwd~~~~~--~~~~~~---------~- 870 (1128)
+.. ..++ ....| .++|+++....+|+|.+.|..+.. ....+. +
T Consensus 221 ---------~~~--------------~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~ 277 (386)
T 3sjl_D 221 ---------HPE--------------DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 277 (386)
T ss_dssp ---------SCT--------------TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE
T ss_pred ---------ccc--------------cccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccc
Confidence 000 0000 01133 245555444446667777765443 222221 0
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeC----------CCcEEEEecccceeeecccccccCeeEEEEcCCCC-EEEE-EcCCCc
Q 001190 871 PPPASTFLAFHPQDNNIIAIGTE----------DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN-ILVS-SGADAQ 938 (1128)
Q Consensus 871 ~~~~v~~l~~s~~d~~~lasg~~----------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s-~~~Dg~ 938 (1128)
..+....+++++ +++.+..... .++|.+.|+.+++.+.++..- .++.+|++++|++ +|++ ...++.
T Consensus 278 ~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~ 355 (386)
T 3sjl_D 278 RPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKT 355 (386)
T ss_dssp EECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTE
T ss_pred cCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCe
Confidence 123455688888 6666655432 257999999999999887643 4688999999997 6655 456899
Q ss_pred EEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC
Q 001190 939 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1128)
Q Consensus 939 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 974 (1128)
|.++|..+++.+..+... .....+.+++|
T Consensus 356 VsViD~~t~k~~~~i~~~-------~~p~~l~~s~d 384 (386)
T 3sjl_D 356 LYIHDAESGEELRSVNQL-------GHGPQVITTAD 384 (386)
T ss_dssp EEEEETTTCCEEEEECCC-------CSSCCEEEECC
T ss_pred EEEEECCCCcEEEEecCC-------CCCceeEECCc
Confidence 999999999876665444 44566777776
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.50 E-value=2.4e-12 Score=159.04 Aligned_cols=247 Identities=11% Similarity=0.038 Sum_probs=160.9
Q ss_pred cCCCcceEEEEEccCCCEEEEEeCC-----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCe-
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~- 476 (1128)
.+|...+..++|||||++||.+..+ ..|++||+.+|+.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 159 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~ 231 (741)
T 1yr2_A 159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPK 231 (741)
T ss_dssp ----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC-
T ss_pred cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCcc
Confidence 3455678999999999999987654 3699999999986542 122223468999999 8 4555555443
Q ss_pred -------------EEEEe-cCCC----eEEEecCCCCCeEEEeccCCCCccEEEEEeccC-----cEEEEecCCC--Cce
Q 001190 477 -------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTM--GSR 531 (1128)
Q Consensus 477 -------------i~vWd-~~g~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~--~~~ 531 (1128)
|++|+ .++. .+.....+...+..+.|++ ||++|+..+.++ .|.+||++++ ...
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence 88999 5544 2222233434578888865 778888877654 8999999776 313
Q ss_pred eeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC--ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcE
Q 001190 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1128)
Q Consensus 532 ~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i 609 (1128)
..+..+...+... ++|+|+.|+..+........|.+||+.++ +....+. +....+..+.+. ++..+++...|+..
T Consensus 310 ~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 310 TALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNLESVGIA-GNRLFASYIHDAKS 386 (741)
T ss_dssp EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEEEEEEEE-BTEEEEEEEETTEE
T ss_pred EEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-CCCCeEEEEEEE-CCEEEEEEEECCEE
Confidence 3444444334444 34899999887754334678999999885 3333343 333356667776 45566777788887
Q ss_pred EEEECC-CCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc----CCcEEEEEcccCc
Q 001190 610 KFWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (1128)
Q Consensus 610 ~iwd~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~----dg~i~iw~~~~~~ 662 (1128)
++|.+. ++.....+..+. ...+..+.++|+++.++.... .++|++||+.++.
T Consensus 387 ~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 387 QVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 776543 455555554322 335788899999876664332 4789999998764
No 204
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=4.7e-08 Score=121.54 Aligned_cols=558 Identities=11% Similarity=0.028 Sum_probs=312.8
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeec-------ccccceeEEEEecCCCeEEEEEecCCCeEE
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-------AHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~-------~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~ 478 (1128)
...|.+|.-.++|. |-.|+.+| +..||-.+ .+.+.... -....|.++.-.++|. .|..|+.++-+.
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~--~lWigt~~~Gl~ 90 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTR---FITYYKEEQSSSVQSITGNELNEVYTDPVQP--VIWIATQRAGLN 90 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSS---EEEECCCSSCSSSCCCSCSCEEEEEECSSSS--EEEEEESSSCEE
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCc---eEEEEcCCCCCccccccccccceEEEcCCCC--EEEEEeCCCCcc
Confidence 45899999988885 55566777 66677433 22211100 0123588888888776 245566665789
Q ss_pred EEe-cCCCeEEEecC--------CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-----CCCCeEEEE
Q 001190 479 VWE-LSGRKLFNFEG--------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHWCTTM 544 (1128)
Q Consensus 479 vWd-~~g~~~~~~~~--------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-----~~~~~i~~~ 544 (1128)
.|| .+++. ..+.. ....|.++......++ .|..++.++.|..||..+........ .....|.++
T Consensus 91 ~~d~~~~~f-~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i 168 (781)
T 3v9f_A 91 AYNYETQSF-SVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTA 168 (781)
T ss_dssp EEETTTTEE-EEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEE
T ss_pred eECCCCCeE-EeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEE
Confidence 999 55443 33311 1235778775321133 56666655667888876543322211 123468888
Q ss_pred EEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEec------cccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 001190 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1128)
Q Consensus 545 ~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~ 618 (1128)
...++|.+.+... .+.|..||..+++...-.. ......|.++...+++... .|+.+ .|.+||..+++
T Consensus 169 ~~d~~g~lwigt~-----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lw-igt~~-Gl~~~d~~~~~ 241 (781)
T 3v9f_A 169 TEAEDGKLYIGHV-----EGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW-IGTSK-GLALFNANTET 241 (781)
T ss_dssp EEEETTEEEEEET-----TTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEE-EEETT-EEEEEETTTTE
T ss_pred EECCCCCEEEEec-----CCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEE-EEeCC-cHheECCCCCc
Confidence 8888887665432 4358889988765433211 1112357777777776644 45555 68999988776
Q ss_pred eeEEEecC-----CCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeeccccccc
Q 001190 619 ILTSTDAE-----GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1128)
Q Consensus 619 ~~~~~~~~-----~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 693 (1128)
........ -....|.++...++|. |.+|+..+-|.+++..+... .......+ ..+. .+..
T Consensus 242 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~--~~~~~~~f-------~~~~-~~~~---- 306 (781)
T 3v9f_A 242 FTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQF--LLPEQIRF-------EFIR-EGDN---- 306 (781)
T ss_dssp EEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-----------C-------EEEC-BCSS----
T ss_pred EEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCee--eeeecccc-------cccc-CCCC----
Confidence 54322111 1123588888877775 55566656677888755411 00000000 0000 0000
Q ss_pred ccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEe
Q 001190 694 SSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 773 (1128)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 773 (1128)
........|.++...
T Consensus 307 -----------------------------------------------------------------~~~l~~~~v~~i~~D 321 (781)
T 3v9f_A 307 -----------------------------------------------------------------NYSLSNASARYIFQD 321 (781)
T ss_dssp -----------------------------------------------------------------TTSBSSSCEEEEEEC
T ss_pred -----------------------------------------------------------------CCCCCCCeEEEEEEe
Confidence 000134568888888
Q ss_pred cCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCe
Q 001190 774 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK 853 (1128)
Q Consensus 774 ~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~ 853 (1128)
.+|. |-.++.++-|..++.....+ +.+........... -....|.+++..++|.+.+...++.
T Consensus 322 ~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~~~~~~~~~~~~----l~~~~v~~i~~d~~g~lWigt~~~G 384 (781)
T 3v9f_A 322 SFNN-IWIGTWGGGINFISNAPPTF------------HTWSYSPTQMNESS----LSNKVVSSVCDDGQGKLWIGTDGGG 384 (781)
T ss_dssp SSCC-EEEEEBSSCEEEECSSCCSC------------EEEC----CCCSSC----CSSSCEEEEEECTTSCEEEEEBSSC
T ss_pred CCCC-EEEEecCCeEEEeCCCCCcc------------eeeccCccccccCC----CCCcceEEEEEcCCCCEEEEeCCCc
Confidence 8887 44555555566665332111 01110000000000 1345699999988888776655677
Q ss_pred EEEEECCCceEEEEe---eCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc--ccccCeeEEEEcCCCC
Q 001190 854 ISLFNMMTFKVMTTF---MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK--GHQKRITGLAFSTSLN 928 (1128)
Q Consensus 854 i~vwd~~~~~~~~~~---~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~ 928 (1128)
|..|+..+++...-. ......|.++...+ ++.+. .|+.++-|..++..+++...... .....|.++...++|.
T Consensus 385 l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~ 462 (781)
T 3v9f_A 385 INVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK 462 (781)
T ss_dssp EEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE
T ss_pred EEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC
Confidence 999998765432211 12345688999887 66655 47777779999988776443221 2346799999988887
Q ss_pred EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCC
Q 001190 929 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSA 1008 (1128)
Q Consensus 929 ~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~ 1008 (1128)
+.+... +-|..||..+++........ ........+.++...++|.+.+.+.++.+..|+..+++.............
T Consensus 463 lwigt~--~Gl~~~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~ 539 (781)
T 3v9f_A 463 IWIGTH--AGVFVIDLASKKVIHHYDTS-NSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSN 539 (781)
T ss_dssp EEEEET--TEEEEEESSSSSCCEEECTT-TSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCS
T ss_pred EEEEEC--CceEEEeCCCCeEEecccCc-ccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCC
Confidence 666443 45889998876532211100 001112568889999999887776667788899876543221111111146
Q ss_pred CeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEE
Q 001190 1009 PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1088 (1128)
Q Consensus 1009 ~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~i 1088 (1128)
.|.++...++|++.+.. .+|.|..||..+++... +.....++ . ..+.++...+ ++++.++ +.+| |..
T Consensus 540 ~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~-~~~~~gl~------~--~~i~~i~~d~-~g~lW~~-t~~G-l~~ 606 (781)
T 3v9f_A 540 TINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQV-FQRKEGLP------N--THIRAISEDK-NGNIWAS-TNTG-ISC 606 (781)
T ss_dssp CEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEE-ECGGGTCS------C--CCCCEEEECS-SSCEEEE-CSSC-EEE
T ss_pred eeEEEEECCCCCEEEEE-CCCceEEECCCCCcEEE-ccccCCCC------C--ceEEEEEECC-CCCEEEE-cCCc-eEE
Confidence 78999998899865544 46665999988876433 22111111 1 1235666665 4555554 4445 555
Q ss_pred EcCCCC
Q 001190 1089 MEPSES 1094 (1128)
Q Consensus 1089 Wd~~~~ 1094 (1128)
++..+.
T Consensus 607 ~~~~~~ 612 (781)
T 3v9f_A 607 YITSKK 612 (781)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 666543
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.48 E-value=1.8e-10 Score=125.33 Aligned_cols=279 Identities=10% Similarity=-0.041 Sum_probs=190.1
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
....+.++++.++|+ +.++...++.|.+||.. ++... + .+..+...+.++++.++|.+.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~---------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---F---------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---E---------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---E---------------ECCCCCCcceeEEECCCCCEEE
Confidence 456799999999998 66665568899999987 55321 0 0223446789999999999888
Q ss_pred EEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEE-ecCCCCCeEEEe
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSIC 501 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~-~~~h~~~v~~~~ 501 (1128)
+...++.|..||.. ++.. .. .+......+.++++.++|. +.++...++.|..||..++.... +......+.+++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~-~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFT-EY-PLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EETTTTEEEEECTT-SCEE-EE-ECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEE
T ss_pred EecCCCeEEEECCC-CCeE-Ee-cCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEE
Confidence 77778889999988 5432 11 2333446789999999998 67777768899999954665532 333455688888
Q ss_pred ccCCCCccEEEEEeccCcEEEEecCCCCcee-eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
+.+ ++++.++...++.|..|+. .+.... ........+..++++++|+..++.. ..+.|.+||. +++.....
T Consensus 153 ~d~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 153 LGS--DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEYD 224 (300)
T ss_dssp ECT--TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEEE
T ss_pred ECC--CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEEE
Confidence 865 5666666666788999987 333322 2223345789999999997666543 3667999998 55544332
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
.......+..++++++++..++...++.|..|+. +++.. .+........+.+++++++|++.++.. . .|..++.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2112235778999999886666556789999998 45433 333332334678999999998666554 4 6666654
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.45 E-value=1.9e-10 Score=128.07 Aligned_cols=277 Identities=7% Similarity=-0.054 Sum_probs=179.0
Q ss_pred EEeCCCCcEEEEee-ccC---eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe-
Q 001190 351 DFHPSHQTLLLVGS-SNG---EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF- 425 (1128)
Q Consensus 351 ~fspdg~~lla~gs-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 425 (1128)
...|++++++++-. ... +|.+||..+++.+.. +.....+ .+++||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34577774444432 222 889999999886532 2212223 899999999999886
Q ss_pred ---------CCCeEEEEEccCCCcceeceee-ccc---ccceeEEEEecCCCeEEEEEec--CCCeEEEEecCCCeEEE-
Q 001190 426 ---------TKHLIQLYSYAGSNDLRQHSQI-DAH---VGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWELSGRKLFN- 489 (1128)
Q Consensus 426 ---------~d~~i~vwd~~~~~~~~~~~~~-~~h---~~~v~~l~fs~d~~~~~l~s~s--~d~~i~vWd~~g~~~~~- 489 (1128)
.++.|.+||..+.+.+..+..- ..+ ...-..++|+|||++ |+.+. .++.|.++|.+++.+..
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~--l~v~n~~~~~~v~viD~t~~~~~~~ 163 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD--LLFFQFAAGPAVGLVVQGGSSDDQL 163 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE--EEEEecCCCCeEEEEECCCCEEeEE
Confidence 3678999999987766543211 010 123458999999994 55544 25789999944455555
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec-----CCCCe-EEEEEEcCCCCeEEEeeeccCCC
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHW-CTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-----~~~~~-i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
+. ..+. +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++.... .
T Consensus 164 i~-~~~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~ 233 (373)
T 2mad_H 164 LS-SPTC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY----S 233 (373)
T ss_pred cC-CCce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----C
Confidence 43 2222 23333332 45677788999999998 655442221 11112 233456677665554442 5
Q ss_pred ceEEEEeCCCCc--eeeEeccc---------cCCceeEEEEeCCCCEEEEEEC----------CCcEEEEECCCCeeeEE
Q 001190 564 SFLVEWNESEGT--IKRTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILTS 622 (1128)
Q Consensus 564 ~~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~ 622 (1128)
+.+.+.|+.++. .+..+... .......+.+++++++++++.. ++.|.++|..+++.+..
T Consensus 234 ~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~ 313 (373)
T 2mad_H 234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ 313 (373)
T ss_pred ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE
Confidence 689999987553 22222211 0112334788999998888653 35799999999999998
Q ss_pred EecCCCCCCcceEEEcCCCC-EEEEEE-cCCcEEEEEcccCcc
Q 001190 623 TDAEGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGLR 663 (1128)
Q Consensus 623 ~~~~~~~~~v~~v~~sp~~~-~l~~~~-~dg~i~iw~~~~~~~ 663 (1128)
+.... ....++|+|||+ +++++. .++.|.++|..+++.
T Consensus 314 i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 314 ISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 87543 468999999999 777776 489999999988743
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.45 E-value=1.7e-11 Score=136.52 Aligned_cols=204 Identities=13% Similarity=0.132 Sum_probs=143.7
Q ss_pred eEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee--
Q 001190 835 PCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-- 909 (1128)
Q Consensus 835 ~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-- 909 (1128)
..++|+|||++++++. ++.|.+.|+.+++.+.++.... +....|.+.+.+++.+.||.+.+.++.+++...
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 4578999999988875 4679999999999998886422 133344244666677778888888886665442
Q ss_pred --cccccccCe-eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCC------CCCCCccEEEEcCCCCEEEE
Q 001190 910 --KLKGHQKRI-TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG------KTPTGDTRVQFNADQVRMLV 980 (1128)
Q Consensus 910 --~l~~h~~~V-~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~v~~s~d~~~l~~ 980 (1128)
.+.....++ ..+.|+++++.++..+..+.|.+.|+.++............. ........++++||++++++
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 222222222 245689998887777788999999997654221111111000 00122334799999988877
Q ss_pred Ee-----------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCC-EEEEEe-cCCcEEEEecCCCceEEEeC
Q 001190 981 VH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 981 ~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.. .+.|.++|..+.+.+..+.. ......++|+|||+ +++++. .++.|.|+|+.+++.+.++.
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIEL----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEEC----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 53 24799999999999998876 34688999999999 888888 59999999999999999873
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.44 E-value=4.1e-11 Score=131.41 Aligned_cols=238 Identities=13% Similarity=0.138 Sum_probs=164.8
Q ss_pred CCeeEEEeccCCCeEEE-------E-eCCeEEEEECCCceEEEEee----CCCCCeeEEEEcCCC-CCEEEEEeCCCcEE
Q 001190 832 EAVPCIALSKNDSYVMS-------A-TGGKISLFNMMTFKVMTTFM----SPPPASTFLAFHPQD-NNIIAIGTEDSTIH 898 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~-------~-~dg~i~vwd~~~~~~~~~~~----~~~~~v~~l~~s~~d-~~~lasg~~dg~v~ 898 (1128)
....+++|+++|+++++ . .++.|.+||..+++...... ++...+.++++++ + ++++++.. ++.|.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TTEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CCCEE
Confidence 44678999999998888 3 47889999988887643222 2446789999999 6 76665544 44799
Q ss_pred EEecccceeeec-ccc----cccCeeEEEEcCCCCEEEEEcCC---------------CcEEEEECCCCcccceeEEeec
Q 001190 899 IYNVRVDEVKSK-LKG----HQKRITGLAFSTSLNILVSSGAD---------------AQLCVWSIDTWEKRKSVTIHIP 958 (1128)
Q Consensus 899 iwd~~~~~~~~~-l~~----h~~~V~~l~~s~d~~~l~s~~~D---------------g~i~iwd~~~~~~~~~~~~~~~ 958 (1128)
+||.. ++.... ... +...+.+++++++|+++++...+ +.|..||.. ++..... ...
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~- 171 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF- 171 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE-
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCC-
Confidence 99988 765433 221 22458899999999988877655 456667665 4432211 111
Q ss_pred CCCCCCCccEEEEc----CCCCEEEEEe--cCeEEEEecC-Ccccc--cccccCCCCC-CCeEEEEEeeCCCEEEEEecC
Q 001190 959 AGKTPTGDTRVQFN----ADQVRMLVVH--ETQLAIYDAS-KMERI--RQWTPQDALS-APISCAVYSCNSQLVFATFCD 1028 (1128)
Q Consensus 959 ~~~~~~~v~~v~~s----~d~~~l~~~~--d~~i~v~d~~-~~~~~--~~~~~~~~h~-~~v~~l~~s~dg~~l~t~~~d 1028 (1128)
.....++++ ++++.+.++. ++.|.+|+.. ++... ..+.....+. ..+..++++++|+++++...+
T Consensus 172 -----~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 172 -----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp -----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred -----CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 345789999 9998766653 6899999986 34311 1111111112 567899999999988887788
Q ss_pred CcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC-EEEEEECCCcEEEEcCCC
Q 001190 1029 GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN-QFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1029 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~s~~~dg~i~iWd~~~ 1093 (1128)
+.|.+||..+++.+..+. .+...+.+++|+| +++ ++++...++.|..|++..
T Consensus 247 ~~i~~~d~~~g~~~~~~~------------~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIR------------CPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TEEEEECTTCBSCSEEEE------------CSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCCcEeEEEe------------CCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence 999999998887766554 1224578899988 577 566666778999999875
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.43 E-value=3.8e-10 Score=122.66 Aligned_cols=278 Identities=8% Similarity=0.031 Sum_probs=188.9
Q ss_pred CcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
....+.++++.++|...++...++.|.+|+.. . ......+.. ....+..++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~----------------------~~~~~~~~~--~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G----------------------RIKEFEVPT--PDAKVMCLIVSSL 72 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S----------------------CEEEEECSS--TTCCEEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C----------------------ceEEEECCC--CCCcceeEEECCC
Confidence 45678999999999977777678888888643 1 111101111 3356889999999
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEE-EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee-cccccccCee
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-KLKGHQKRIT 919 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V~ 919 (1128)
|+++++.. ++.|..||.. ++... .+......+.++++++ +++++++...++.|..|+.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 99887766 6889999988 55432 2222346789999999 88888877778899999987 55432 2333446789
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccccc
Q 001190 920 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 998 (1128)
Q Consensus 920 ~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 998 (1128)
++++.++|+++++...++.|..||. +++... ... . .....+..++++++|.+.++.. .+.|.+|+. ++....
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~-~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPL-P-TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE 222 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EEC-S-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeC-C-CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE
Confidence 9999999998887777888999998 444321 111 1 1125678999999998777654 568999998 444332
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEE
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1078 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1078 (1128)
. ... .+...+.+++++++|++.++...++.|.+||. +++......+ .....+.++++.+ ++++++
T Consensus 223 ~-~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~-----------~~~~~~~~i~~~~-~g~l~v 287 (300)
T 2qc5_A 223 Y-DIP-TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQ-----------TENAEPHGITFGK-DGSVWF 287 (300)
T ss_dssp E-ECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECC-----------STTCCCCCEEECT-TSCEEE
T ss_pred E-ECC-CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECC-----------ccCCccceeEeCC-CCCEEE
Confidence 2 111 12567899999999996666666789999998 5654432221 1122356788888 577666
Q ss_pred EEECCCcEEEEcCC
Q 001190 1079 IGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1079 s~~~dg~i~iWd~~ 1092 (1128)
+.. . .|..+++.
T Consensus 288 ~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 288 ALK-C-KIGKLNLN 299 (300)
T ss_dssp ECS-S-EEEEEEEC
T ss_pred Ecc-C-ceEEeCCC
Confidence 655 4 67666653
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.41 E-value=1.2e-11 Score=152.98 Aligned_cols=247 Identities=9% Similarity=-0.034 Sum_probs=155.4
Q ss_pred CCCcEEEEEEeCCCCcEEEEeecc----CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
|...+..++|||||++++.+.+.+ ..|++||+.+|+.+.. ..+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-
Confidence 334788999999999554443332 3699999999886531 111222467899999
Q ss_pred CEEEEEeCCCe--------------EEEEEccCCCcce-eceeecccccceeEEEEecCCCeEEEEEecC-----CCeEE
Q 001190 419 NYVGVAFTKHL--------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKLIK 478 (1128)
Q Consensus 419 ~~las~~~d~~--------------i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~-----d~~i~ 478 (1128)
+.|+.++.++. |++|++.++.... .......|...+..+.|+|||+. |+..+. ...|.
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVH 297 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEE
Confidence 99998887654 8899998765321 11122234446889999999995 444443 34899
Q ss_pred EEe-cCC--CeEEEecCCCCCeEEEeccCCCCccEEEEEecc----CcEEEEecCCCC-c-eeeecCCCCeEEEEEEcCC
Q 001190 479 VWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMG-S-RVDYDAPGHWCTTMLYSAD 549 (1128)
Q Consensus 479 vWd-~~g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~-~-~~~~~~~~~~i~~~~~s~~ 549 (1128)
+|| .++ +....+..+...+....+ + +|+.|+..+.+ +.|.+||++... . ...+..+...+..+.++ +
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~~-~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~ 373 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFVD-G--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G 373 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEEE-E--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B
T ss_pred EEECCCCCCcccEEecCCCCceEEEEe-c--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C
Confidence 999 555 314556555555554432 3 55677766653 459999987742 2 33334444456677776 4
Q ss_pred CCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE----CCCcEEEEECCCCee
Q 001190 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (1128)
Q Consensus 550 g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~ 619 (1128)
+.++++... ++...|.+++. +++....+..+....+..+.++++++.++... ..+.|++||+.+++.
T Consensus 374 ~~lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 374 NRLFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 444555443 22334445554 45556666654344677888999987666432 357899999998873
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.40 E-value=1.1e-10 Score=127.93 Aligned_cols=248 Identities=11% Similarity=0.066 Sum_probs=165.0
Q ss_pred CCCcEEEEEEeCCCCcEEEE-------eeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 343 QGSTVISMDFHPSHQTLLLV-------GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~-------gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
.-....+++|+++|+ ++++ ++.++.|.+||..+++.... . .....++...+.+++++
T Consensus 16 ~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~------------~~~~~~~~~~~~~i~~~ 79 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C------------KPEVNGYGGIPAGCQCD 79 (314)
T ss_dssp CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E------------CCEETTEECCEEEEEEC
T ss_pred cCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E------------ecccCCCCCCCceEEEe
Confidence 344678999999998 6676 56789999999887765321 0 00012345679999999
Q ss_pred cC-CCEEEEEeCCCeEEEEEccCCCccee-ceeecc-cccceeEEEEecCCCeEEEEEecCC---------------CeE
Q 001190 416 PD-GNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDD---------------KLI 477 (1128)
Q Consensus 416 pd-g~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~-h~~~v~~l~fs~d~~~~~l~s~s~d---------------~~i 477 (1128)
++ |+++++. ..+.|.+||.+ ++.... .....+ +...+.++++.++|+ +.++...+ +.|
T Consensus 80 ~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 80 RDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred cCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeE
Confidence 99 7655544 44479999988 654321 111111 234589999999998 55655544 567
Q ss_pred EEEecCCCeEEEecCCCCCeEEEecc--CCCCccEEEEE-eccCcEEEEecCC-CCc-----eeeecCCC-CeEEEEEEc
Q 001190 478 KVWELSGRKLFNFEGHEAPVYSICPH--HKENIQFIFST-AIDGKIKAWLYDT-MGS-----RVDYDAPG-HWCTTMLYS 547 (1128)
Q Consensus 478 ~vWd~~g~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s~-~~dg~i~~wd~~~-~~~-----~~~~~~~~-~~i~~~~~s 547 (1128)
..||..++.... ..+......++++ .+++++.++.+ ..++.|.+|+++. +.. ...+..+. ..+..++++
T Consensus 156 ~~~~~~g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 156 YCFTTDGQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EEECTTSCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EEECCCCCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 778844654433 2333456778886 11366555544 5678999999762 221 11222222 568889999
Q ss_pred CCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCC
Q 001190 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN 616 (1128)
Q Consensus 548 ~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~ 616 (1128)
++|+..++.. .++.|.+||..+++.+..+..+.. .+.+++++++++.|++++ .++.|..|++..
T Consensus 235 ~~G~l~v~~~----~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANW----GSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEE----TTTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEc----CCCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9998777764 367899999987887777765543 688899999999666554 568899999764
No 212
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.37 E-value=7e-11 Score=131.63 Aligned_cols=273 Identities=8% Similarity=0.059 Sum_probs=183.5
Q ss_pred CCCCcEEEEeecc----CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe----
Q 001190 354 PSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF---- 425 (1128)
Q Consensus 354 pdg~~lla~gs~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 425 (1128)
|++++++++...+ +.|.+.|..+++.+.. +.--..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-------------------I~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGM-------------------TDGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE-------------------EECCCCC--ceEECCCCCEEEEEecccc
Confidence 5666555555444 7999999999988753 1111234 799999999998876
Q ss_pred ------CCCeEEEEEccCCCcceeceeec--c---cccceeEEEEecCCCeEEEEEec--CCCeEEEEe-cCCCeEEEec
Q 001190 426 ------TKHLIQLYSYAGSNDLRQHSQID--A---HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKLFNFE 491 (1128)
Q Consensus 426 ------~d~~i~vwd~~~~~~~~~~~~~~--~---h~~~v~~l~fs~d~~~~~l~s~s--~d~~i~vWd-~~g~~~~~~~ 491 (1128)
.++.|.++|..+++.+..+. +. . ....-..++|+|||++ ++.+. .++.|.+.| .+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999988776542 21 0 1234567899999994 55444 368999999 8888887776
Q ss_pred CCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee----ecCCCCeE-EEEEEcCCCCeEEEeeeccCCCceE
Q 001190 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHWC-TTMLYSADGSRLFSCGTSKDGDSFL 566 (1128)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~~i-~~~~~s~~g~~l~~~~~~~~~~~~i 566 (1128)
--.. ....+.+. ..+++.+.||.+.+.+...++.... +.....++ ..+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4221 12222222 4566677788887777744333311 11111121 23567899888777653 6789
Q ss_pred EEEeCCCCcee--eEeccc---------cCCceeEEEEeCCCCEEEEEEC----------CCcEEEEECCCCeeeEEEec
Q 001190 567 VEWNESEGTIK--RTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 567 ~~wd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~ 625 (1128)
.+.|....... ..+... .......++++++++++++... ++.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111100 0011223789999998887642 35799999999999998875
Q ss_pred CCCCCCcceEEEcCCCC-EEEEEE-cCCcEEEEEcccCc
Q 001190 626 EGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIGL 662 (1128)
Q Consensus 626 ~~~~~~v~~v~~sp~~~-~l~~~~-~dg~i~iw~~~~~~ 662 (1128)
.. ....++|+||++ ++++.. .++.|.++|+.+.+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 43 368999999999 888888 58999999999884
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.35 E-value=6.2e-11 Score=130.06 Aligned_cols=240 Identities=9% Similarity=0.057 Sum_probs=162.4
Q ss_pred CCeeEEEeccCCCeEEEEeCCeEEEEECCCce-----------EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 001190 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFK-----------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 900 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iw 900 (1128)
..+..+++++...++++|+...+.+|++.+.. ..... .+.. |+.++| |+.+|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36899999999999999997788889876443 11222 3556 999999 67888888 88999999
Q ss_pred ecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEE
Q 001190 901 NVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 980 (1128)
Q Consensus 901 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 980 (1128)
|+.+.........|..++.++.+.+.. ++++..||.|.+||++++.... .. ..+++++|||+| ..+.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~-------~~Vs~v~WSpkG-~~vg 178 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA-------QNVTSFDVTNSQ-LAVL 178 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE-------ESEEEEEECSSE-EEEE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc-------CCceEEEEcCCc-eEEE
Confidence 998766555666778889888877653 8889999999999999876532 21 578999999999 4444
Q ss_pred EecCeEEEEecCCccc--cccccc------CCCCCCCeEEEEEeeCCCEEEEEec-----------CCcEEEEecCCCce
Q 001190 981 VHETQLAIYDASKMER--IRQWTP------QDALSAPISCAVYSCNSQLVFATFC-----------DGNIGVFDADTLRL 1041 (1128)
Q Consensus 981 ~~d~~i~v~d~~~~~~--~~~~~~------~~~h~~~v~~l~~s~dg~~l~t~~~-----------dg~i~vwd~~~~~~ 1041 (1128)
..||.+++|+...+.. ...+.. +..|...|.++.|.++++++++=.. +-.++|-..+.+..
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~~ 258 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSA 258 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCCc
Confidence 5699999998887664 334421 1134788999999999999886221 11466666434433
Q ss_pred EEEeCCCCCCCCcccCCCCccceEE-EEEecCCCCEEEEEECCC-cEEEEc
Q 001190 1042 RCYIAPSTYLSPSVLNGSQTVYPLV-VAAHPLEPNQFAIGLTDG-SVKVME 1090 (1128)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~l~s~~~dg-~i~iWd 1090 (1128)
...-......+.+.+.+.+.-+... -.|.|+..+++++++.-. .|-+++
T Consensus 259 ~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~ 309 (388)
T 1xip_A 259 SFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWD 309 (388)
T ss_dssp EEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEEC
T ss_pred eeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEec
Confidence 2211111111111111233333333 357775556666665544 477775
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.34 E-value=4.9e-10 Score=121.33 Aligned_cols=228 Identities=9% Similarity=0.014 Sum_probs=152.7
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
-..+..|++++..|...+ ++.|..||..+++.. .+. ....+.++++++ +++++++ . ++.|.+||..+++....
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 356889999766655554 688999999887653 332 456799999999 8886654 3 67899999988765322
Q ss_pred ccc----cccCeeEEEEcCCCCEEEEEcC---------CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCE
Q 001190 911 LKG----HQKRITGLAFSTSLNILVSSGA---------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 977 (1128)
Q Consensus 911 l~~----h~~~V~~l~~s~d~~~l~s~~~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 977 (1128)
... ....+..++++|+|+++++... ...-.||.+............. .....++|+||++.
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~------~~pngi~~spdg~~ 162 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV------DISNGLDWSLDHKI 162 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE------SBEEEEEECTTSCE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc------ccccceEEcCCCCE
Confidence 211 2245789999999997776432 2334666665432222211111 34578999999998
Q ss_pred EEEEe--cCeEEEEec--CCcccc--cccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCC
Q 001190 978 MLVVH--ETQLAIYDA--SKMERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL 1051 (1128)
Q Consensus 978 l~~~~--d~~i~v~d~--~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1051 (1128)
|++++ ++.|.+|++ .++... ..+.....+......++++++|++.++....+.|.+||.++|+.+..+.
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~----- 237 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK----- 237 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE-----
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE-----
Confidence 87764 688999987 344321 1111111114567899999999977777778889999999999988887
Q ss_pred CCcccCCCCccceEEEEEe-cCCCCEEEEEECC
Q 001190 1052 SPSVLNGSQTVYPLVVAAH-PLEPNQFAIGLTD 1083 (1128)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~-p~~~~~l~s~~~d 1083 (1128)
.....+++++|. |+...++++...+
T Consensus 238 -------~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 238 -------LPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp -------CSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred -------CCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 222457899998 6433445555543
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.31 E-value=1.1e-09 Score=123.88 Aligned_cols=253 Identities=10% Similarity=0.013 Sum_probs=166.4
Q ss_pred CCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC--cEEEEecccceee
Q 001190 832 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDEVK 908 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~ 908 (1128)
.....++++++|+++++.. ++.|++||..+++........ .... ++|++ +++.|+++..++ .|.+|+...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4578899999999777665 688999999988776655542 3334 99999 888888887766 7999988766543
Q ss_pred ecc----cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCC-ccEEEEcCCCCEEEEEe-
Q 001190 909 SKL----KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG-DTRVQFNADQVRMLVVH- 982 (1128)
Q Consensus 909 ~~l----~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~v~~s~d~~~l~~~~- 982 (1128)
..+ ..+...+.+++++|++..|+.+..++.|+.||..++.... +......+..... ...++|+|++..|.+++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~-~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL-IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE-EEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE-EecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 2244667899999955555557778899999998765321 1000011111112 13999999655555554
Q ss_pred -cCeEEEEecCCcccccccccCC------------CCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCC
Q 001190 983 -ETQLAIYDASKMERIRQWTPQD------------ALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPS 1048 (1128)
Q Consensus 983 -d~~i~v~d~~~~~~~~~~~~~~------------~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~ 1048 (1128)
.+.|+.|+.... +..+.... ........++++++|+++++-. .++.|++|++.+|+........
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~ 364 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQV 364 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCC
Confidence 678999987533 22221110 0124578999999999777766 7899999998888764433310
Q ss_pred --CCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcC
Q 001190 1049 --TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1049 --~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
.......-....-..+..+++++ ++.++++-..++.|+.+++
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 00000000011234688999999 4888899888999988765
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.31 E-value=6.9e-10 Score=125.48 Aligned_cols=239 Identities=11% Similarity=0.012 Sum_probs=159.4
Q ss_pred CcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE
Q 001190 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 424 (1128)
...+.++|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4689999999998 777777789999999987765421 112 22233 9999999999998
Q ss_pred eCCC--eEEEEEccCCCcceeceeecc-cccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEE----ecCCCCC
Q 001190 425 FTKH--LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN----FEGHEAP 496 (1128)
Q Consensus 425 ~~d~--~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~----~~~h~~~ 496 (1128)
..++ .|.+|+..++........+.. +...+.+++++|++. .|+.+..++.|+.|| ..+..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8765 788999887654332211122 456788999999555 244466688999999 54543222 2222222
Q ss_pred e--EEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC---------------CCeEEEEEEcCCCCeEEEeeec
Q 001190 497 V--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---------------GHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 497 v--~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---------------~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
- ..++|++. ++.++++...++.|+.|+.+.. ...+... -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 38888764 3456666677889999987643 2222222 13478999999999665543
Q ss_pred cCCCceEEEEeCCCCceeeEecccc--------------CCceeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 560 KDGDSFLVEWNESEGTIKRTYAGFR--------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
.+++.|+.|+..++.. .++.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0377899999877764 3333320 124667899998766666667778887765
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.30 E-value=1.9e-10 Score=127.42 Aligned_cols=270 Identities=12% Similarity=0.026 Sum_probs=173.1
Q ss_pred CcEEEEEEeCCCCcEEEEee--ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 345 STVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+..++++|+|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 666643 2343677777655432 111111 01234667899999999998766
Q ss_pred EEeC-----CCeEEEEEccCCCcceeceeec----ccccceeEEEEecCCCeEEEEEec---CCCeEEEEe-cCCCeEEE
Q 001190 423 VAFT-----KHLIQLYSYAGSNDLRQHSQID----AHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE-LSGRKLFN 489 (1128)
Q Consensus 423 s~~~-----d~~i~vwd~~~~~~~~~~~~~~----~h~~~v~~l~fs~d~~~~~l~s~s---~d~~i~vWd-~~g~~~~~ 489 (1128)
+-.. ++.|.+||+.+++.++.+ .+. .+...+..+++++++.. .+++.. .++.|.+|| .+++....
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999998755432 121 23345789999987653 455555 678999999 77877776
Q ss_pred ecCCCCCeE-EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 490 FEGHEAPVY-SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 490 ~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
+.+|..... ...+.. +|..+.+.+.++.++.|.. .+..++++|||+.|+++.. ....++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~---~~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPM---HSTSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEES---SCSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeC---CCCeEEE
Confidence 766532111 022222 4566777777888766631 3678999999998887764 2335555
Q ss_pred EeCC---CCc-----eee--EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEc
Q 001190 569 WNES---EGT-----IKR--TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1128)
Q Consensus 569 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1128)
++.. .+. ... ...++.. ....++++++|..+++...++.|.+||.++++........ ......+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 111 001 1112222 4556899999998888888999999998667654333321 22356889999
Q ss_pred CCCCEEEEEEcCC
Q 001190 639 KEGNLLAVTTADN 651 (1128)
Q Consensus 639 p~~~~l~~~~~dg 651 (1128)
+++.++++.+..+
T Consensus 300 ~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 300 SDGYLYFDCNQLH 312 (343)
T ss_dssp TTSCEEEEECCGG
T ss_pred CCCcEEEEeCccc
Confidence 9888777766443
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.28 E-value=1.5e-10 Score=128.37 Aligned_cols=273 Identities=8% Similarity=0.003 Sum_probs=178.2
Q ss_pred ccEEEEEEecCcceEEEeec--cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 765 SKVVRLLYTNSAVGLLALGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~--dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
.....++++++|+.+++... ++.++||.+.. ++..... -|.. .. ..+-..+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~~~p---~~~~--------~~--~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLIPFP---PQSG--------NA--IITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEEESC---CCCS--------SC--CCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCeecCC---Cccc--------Cc--ccceeEeeEEEEcCC
Confidence 46789999999998877542 34467776641 1111000 0000 00 125567899999999
Q ss_pred CCeEEEEe------CCeEEEEECCCceEEEEeeCC------CCCeeEEEEcCCCCCEEEEEe---CCCcEEEEeccccee
Q 001190 843 DSYVMSAT------GGKISLFNMMTFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGT---EDSTIHIYNVRVDEV 907 (1128)
Q Consensus 843 g~~la~~~------dg~i~vwd~~~~~~~~~~~~~------~~~v~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~~ 907 (1128)
|+++++.. ++.|.+||+.+++.+..+..+ ...+..+++++.++.++++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98776553 368999999999987776532 234689999984455666665 688999999999887
Q ss_pred eecccccccCee-EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cC
Q 001190 908 KSKLKGHQKRIT-GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ET 984 (1128)
Q Consensus 908 ~~~l~~h~~~V~-~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~ 984 (1128)
...+.+|..... ...++++|..+.+.+.|+.++.|. ..+..++|+|||+.|+++. ..
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly~~~~~~~ 217 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLYLSPMHST 217 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEEEEESSCS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEEEEeCCCC
Confidence 777766532211 144566787777788888876663 2246799999999888875 33
Q ss_pred eEEEEecCC---cc-----cccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCccc
Q 001190 985 QLAIYDASK---ME-----RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVL 1056 (1128)
Q Consensus 985 ~i~v~d~~~---~~-----~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1056 (1128)
.+..++... +. ....+.. ..+......++++++|+++++...++.|.+||.++|+......
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~---------- 286 (343)
T 2qe8_A 218 SMYRIKSADLSNLQLTDAELGSKIER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT---------- 286 (343)
T ss_dssp EEEEEEHHHHTCTTCCHHHHHTTCEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----------
T ss_pred eEEEEEHHHhcCCCCChhhhhcceEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----------
Confidence 454444321 10 0111110 0113355689999999988888889999999986776543332
Q ss_pred CCCCccceEEEEEecCCCCEEEEEECCCcEEEE
Q 001190 1057 NGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM 1089 (1128)
Q Consensus 1057 ~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iW 1089 (1128)
..+..++.+++|.+ ++.++++.+..+.+-+|
T Consensus 287 -~~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 287 -DEKLSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp -CGGGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred -CCceecCCeeEECC-CCcEEEEeCcccccccc
Confidence 11234678999998 58888888766555434
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.26 E-value=3.8e-10 Score=137.91 Aligned_cols=245 Identities=11% Similarity=0.099 Sum_probs=161.1
Q ss_pred cCCCcceEEEEEccCCCEEEEEe-----CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC--
Q 001190 403 KDVPISVSRVAWSPDGNYVGVAF-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-- 475 (1128)
Q Consensus 403 ~~h~~~V~~l~~spdg~~las~~-----~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~-- 475 (1128)
.+|...+..++|||||++||.+. .+..|++||+++|+.+.. .+ +......++|+ ||+ .|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~--~~~k~~~~~Ws-Dg~--~l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PL--KDVKFSGISWL-GNE--GFFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EE--EEEESCCCEEE-TTT--EEEEEESSCCC
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--cc--CCceeccEEEe-CCC--EEEEEEecCcc
Confidence 34666899999999999999643 235799999999986542 11 11124678999 999 456555553
Q ss_pred -----------eEEEEe-cCCC----eEEEecC-CCCCeEEEeccCCCCccEEEEEec----cCcEEEEecCCCC-ceee
Q 001190 476 -----------LIKVWE-LSGR----KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG-SRVD 533 (1128)
Q Consensus 476 -----------~i~vWd-~~g~----~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~~wd~~~~~-~~~~ 533 (1128)
.|++|+ .++. ++..... |...+.++.+++ ||++|+.... ++.|.+||++... ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 499999 4433 2333333 444567788866 6677755433 2589999987764 3344
Q ss_pred ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCce--eeEeccccCCceeEEEEeCCCCEEEEEECCC---c
Q 001190 534 YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---Q 608 (1128)
Q Consensus 534 ~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~ 608 (1128)
+..+....... ++++|..++..+......+.|..+|+.++.. .+.+..+....+ .|++++++|+....++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeE
Confidence 44444444444 6788887776654322357899999988754 345555554333 8899999888876443 6
Q ss_pred EEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcC----CcEEEEEcccCc
Q 001190 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD----NGFKILANAIGL 662 (1128)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~d----g~i~iw~~~~~~ 662 (1128)
|++|++.++. ...+.... ...+..+.+++++..++....+ +.+..||+.++.
T Consensus 352 l~~~d~~g~~-~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 352 VEQFDYEGKR-VREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEECTTSCE-EEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEECCCCe-eEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 8999987554 34443322 2346677788888877766555 789999987763
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.26 E-value=3.9e-10 Score=137.78 Aligned_cols=251 Identities=11% Similarity=0.031 Sum_probs=162.0
Q ss_pred CCCcEEEEEEeCCCCcEEEEe----eccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCC
Q 001190 343 QGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~g----s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 418 (1128)
|...+..++|||||++++.+. +....|+|||+.+|+.+.. .+ +......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------~~--~~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------PL--KDVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------EE--EEEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------cc--CCceeccEEEe-CC
Confidence 455789999999999554433 3335899999999986431 01 11113578999 99
Q ss_pred CEEEEEeCCC-------------eEEEEEccCCCcce-eceeecc-cccceeEEEEecCCCeEEEEEec--CCCeEEEEe
Q 001190 419 NYVGVAFTKH-------------LIQLYSYAGSNDLR-QHSQIDA-HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE 481 (1128)
Q Consensus 419 ~~las~~~d~-------------~i~vwd~~~~~~~~-~~~~~~~-h~~~v~~l~fs~d~~~~~l~s~s--~d~~i~vWd 481 (1128)
+.|+.++.+. .|++|++.++..-. .+..... |...+..+.|+|||+.+++.+.. .+..|.+||
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 9999998774 39999998765321 1112233 45567889999999963333222 235899999
Q ss_pred -cCCC-eEEEecCCCCCeEEEeccCCCCccEEEEEecc---CcEEEEecCCCCc--eeeecCCCCeEEEEEEcCCCCeEE
Q 001190 482 -LSGR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRLF 554 (1128)
Q Consensus 482 -~~g~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~--~~~~~~~~~~i~~~~~s~~g~~l~ 554 (1128)
.++. ....+..+....... +.+. ++.+++....+ +.|..+++..... ...+..+...+. .|+++++.|+
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv 341 (693)
T 3iuj_A 266 LSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLF 341 (693)
T ss_dssp TTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEE
T ss_pred CCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEE
Confidence 4443 456666666655554 3332 23444554443 6788899887654 234444544444 8899999988
Q ss_pred EeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC----CcEEEEECCCCeee
Q 001190 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWDMDNVNIL 620 (1128)
Q Consensus 555 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~~~~~ 620 (1128)
.... .++...|++|++..+. ...+.......+..+.++++++.++....+ +.|+.||+.+++..
T Consensus 342 ~~~~-~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 342 AEYM-VDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEE-ETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEE-ECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 7764 2234579999987544 444443333356666777888777766544 88999999887643
No 221
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=4.2e-09 Score=113.97 Aligned_cols=229 Identities=11% Similarity=0.093 Sum_probs=155.8
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
+..-..+..|+|++..++++...++.|..||..+++... ..+...+.+++++|+|++++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v 69 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVA 69 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEE
Confidence 344567999999766688888888999999998776421 11346799999999999655
Q ss_pred EEeCCCeEEEEEccCCCcceeceeec-c-cccceeEEEEecCCCeEEEEEe-cC----------CCeEEEEecCCCeEEE
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTC-GD----------DKLIKVWELSGRKLFN 489 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~~~-~-h~~~v~~l~fs~d~~~~~l~s~-s~----------d~~i~vWd~~g~~~~~ 489 (1128)
+ . ++.|.+||.++++... +.... + ....+++++++|+|+ +.++. .. .+.|..+|..++...
T Consensus 70 ~-~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~- 143 (297)
T 3g4e_A 70 T-I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK- 143 (297)
T ss_dssp E-E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-
T ss_pred E-E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-
Confidence 4 3 5679999998875432 11111 1 234588999999998 44443 21 234444444454433
Q ss_pred ecCCCCCeEEEeccCCCCccEE-EEEeccCcEEEEecC--CCCce--e---eecCCCCeEEEEEEcCCCCeEEEeeeccC
Q 001190 490 FEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYD--TMGSR--V---DYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~--~~~~~--~---~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
+..+....+.++|++ +++.| ++.+.++.|.+|+++ ++... . .+......+..++++++|++.++..
T Consensus 144 ~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~---- 217 (297)
T 3g4e_A 144 YFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY---- 217 (297)
T ss_dssp EEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE----
T ss_pred EeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc----
Confidence 333344567889976 55655 555667899999984 33211 1 1222235678999999997666654
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEe-CCCCEEEEEEC
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGE 605 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~ 605 (1128)
+.+.|..||..+++.+..+..+.. .+.+++|. |+++.|++++.
T Consensus 218 ~~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 218 NGGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred CCCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 367899999999999888887654 68889998 88888777664
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=1.4e-09 Score=118.26 Aligned_cols=234 Identities=11% Similarity=0.030 Sum_probs=157.6
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
.........+|+|+|+.+++++..++.|..|+. +++... +..+...+..++++|+|+++
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~ 100 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLV 100 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEE
Confidence 355568899999999978888888999999987 444211 33356678999999999977
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeeccc-ccceeEEEEecCCCeEEEEE----ecC-------------CCeEEEEe-c
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVT----CGD-------------DKLIKVWE-L 482 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~fs~d~~~~~l~s----~s~-------------d~~i~vWd-~ 482 (1128)
++...++.|.+|+.+ ++.........+. ...++++++.++|. +.+| |.. .+.|..|| .
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 666566889999986 5432211111111 23578899999998 6665 332 25688888 5
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc------CcEEEEecCCCCc---eeeecCCCCeEEEEEEcCCCCeE
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~---~~~~~~~~~~i~~~~~s~~g~~l 553 (1128)
+|+..... .......++|++ +++.|+.+... +.|.+|++..... .............++++++|++.
T Consensus 178 ~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp SCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE
T ss_pred CCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE
Confidence 66654433 344567889866 66777777655 7899999875431 11111223345678899999954
Q ss_pred EEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEE
Q 001190 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd 613 (1128)
++. .+.|.+|+. +++.+..+.... .+..++|+++++.|+.++.++ ++.++
T Consensus 254 v~~------~~gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 254 SSS------GTGVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ECC------SSEEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred Eec------CCcEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 443 234999998 577777776554 477899999998888888764 43333
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=2.2e-10 Score=125.62 Aligned_cols=197 Identities=10% Similarity=0.018 Sum_probs=129.2
Q ss_pred eeEEEeccCCCeEEEEe---CCeEEE--EECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc----
Q 001190 834 VPCIALSKNDSYVMSAT---GGKISL--FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV---- 904 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~---dg~i~v--wd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~---- 904 (1128)
...++|+|||++++++. ++.|.+ +|+.+ +.++..... ..+.|++.+.+++.+.||.+.+.++.+
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 34578899999888875 356888 88877 444432111 223343455666777899988889887
Q ss_pred -ceeee----cccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeec------CCCCCCCccEEEEcC
Q 001190 905 -DEVKS----KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP------AGKTPTGDTRVQFNA 973 (1128)
Q Consensus 905 -~~~~~----~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~v~~v~~s~ 973 (1128)
++... .+.-...+. . ++++..++..+. +.|.+.|+.++........... .+..+.....++++|
T Consensus 199 ~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC
Confidence 55432 122222333 3 666666666666 8999999876432111111100 000012223378999
Q ss_pred CCCEEEEE-e-c--------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEE-EEe-cCCcEEEEecCCCce
Q 001190 974 DQVRMLVV-H-E--------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF-ATF-CDGNIGVFDADTLRL 1041 (1128)
Q Consensus 974 d~~~l~~~-~-d--------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-t~~-~dg~i~vwd~~~~~~ 1041 (1128)
|+++++++ . . +.+.++|+.+.+.+..+.. ......++|++||++++ +.. .++.|.|+|+.+++.
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 99988875 3 2 3677999999999988876 34688999999998544 555 489999999999999
Q ss_pred EEEeC
Q 001190 1042 RCYIA 1046 (1128)
Q Consensus 1042 ~~~~~ 1046 (1128)
+.++.
T Consensus 350 v~~I~ 354 (368)
T 1mda_H 350 QSSVE 354 (368)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 99887
No 224
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.22 E-value=1.8e-05 Score=93.80 Aligned_cols=528 Identities=9% Similarity=0.006 Sum_probs=289.4
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecC-CCCCeE
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVY 498 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~-h~~~v~ 498 (1128)
+|+.+ ..+.|+..++++....... .+ ..-..+..++|.+++.. +.++-..++.|..++.+|.....+.. ......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~-~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAI-PL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEEC-CC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEE-Ec-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44443 4567899999875432211 12 22346889999997774 45566678899999955544333322 223466
Q ss_pred EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceee
Q 001190 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 578 (1128)
.+++.+. .+.+.++-...+.|.+.+++.................+++.|....|+..-. .....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 7777543 3455566666788999998765444444344556899999996666665432 125678888876554433
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
.... ......++++++++.|+.+. ..+.|..+|+..... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVPN--VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EECS--CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EECC--CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 3332 22567799999888888776 567899999876544 233221 12345777754 33444444477888888
Q ss_pred cccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCC
Q 001190 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDK 737 (1128)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 737 (1128)
..++... ..+.... .....+.+....+.- ..+ .+.
T Consensus 235 k~tg~~~-~~l~~~~-----~~p~~i~v~~~~~q~----~~n-----------~C~------------------------ 269 (628)
T 4a0p_A 235 KTSGQNR-TIIQGHL-----DYVMDILVFHSSRQS----GWN-----------ECA------------------------ 269 (628)
T ss_dssp TTTCCSC-EEEECSC-----CSCCEEEEECGGGSC----CCC-----------TTT------------------------
T ss_pred CCCCCce-EEEecCC-----CCcceeeeeeecccc----cce-----------Eec------------------------
Confidence 6665321 1111110 011122111111000 000 000
Q ss_pred CCcceeEEEeeCCceeEEEecCCCCCcccEEEEEE-ecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccC
Q 001190 738 PKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLY-TNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 816 (1128)
Q Consensus 738 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1128)
. ..+....+++ .|.+.+- +.+..|...
T Consensus 270 --~----------------------~ng~C~~~C~~~~~~~~~-C~C~~g~~l--------------------------- 297 (628)
T 4a0p_A 270 --S----------------------SNGHCSHLCLAVPVGGFV-CGCPAHYSL--------------------------- 297 (628)
T ss_dssp --T----------------------TGGGCSSEEEEETTTEEE-EECSTTCEE---------------------------
T ss_pred --c----------------------CCCCcchhhhcCCCCCee-EEcCCCcEe---------------------------
Confidence 0 0000001111 1212211 112221100
Q ss_pred CCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceE-EEEeeC-CCCCeeEEEEcCCCCCEEEEEeCC
Q 001190 817 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV-MTTFMS-PPPASTFLAFHPQDNNIIAIGTED 894 (1128)
Q Consensus 817 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~-~~~~~~-~~~~v~~l~~s~~d~~~lasg~~d 894 (1128)
.....+|.. ...+|+.+....|+-..+..... ...+.. .-..+.+++|.+.++.++.+-...
T Consensus 298 -------------~~d~~~C~~---~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~ 361 (628)
T 4a0p_A 298 -------------NADNRTCSA---PTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQ 361 (628)
T ss_dssp -------------CTTSSCEEC---CSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred -------------cccCCcCcc---ccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCc
Confidence 111122322 24566666677777666653321 112221 234578999998556666666667
Q ss_pred CcEEEEecccceeeecccc------cccCeeEEEEcCCCCEE-EEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCcc
Q 001190 895 STIHIYNVRVDEVKSKLKG------HQKRITGLAFSTSLNIL-VSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDT 967 (1128)
Q Consensus 895 g~v~iwd~~~~~~~~~l~~------h~~~V~~l~~s~d~~~l-~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 967 (1128)
+.|+.++.........+.. ....+.++++...++.| .+-+..+.|.+.+++. +....+... ......
T Consensus 362 ~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G-~~~~~l~~~-----~l~~Pr 435 (628)
T 4a0p_A 362 NMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG-RSVGVVLKG-----EQDRPR 435 (628)
T ss_dssp TEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CEEEEEEEC-----TTCCEE
T ss_pred ceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC-CeEEEEEeC-----CCCcee
Confidence 8898888764332222221 23467899999876644 5666778899999864 322222111 115688
Q ss_pred EEEEcCCCCEEEEEe--cC--eEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEec-CCcEEEEecCCCceE
Q 001190 968 RVQFNADQVRMLVVH--ET--QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC-DGNIGVFDADTLRLR 1042 (1128)
Q Consensus 968 ~v~~s~d~~~l~~~~--d~--~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~-dg~i~vwd~~~~~~~ 1042 (1128)
.+++.|...+|..++ .. .|...++. |.....+.... -.....++++++++.|+.+.. .+.|...++.. ...
T Consensus 436 ~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~--l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r 511 (628)
T 4a0p_A 436 AVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSG--LSKPIALALDSRLGKLFWADSDLRRIESSDLSG-ANR 511 (628)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSC
T ss_pred eEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEecc--CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-Cce
Confidence 999999544454433 22 56666654 33222222211 456789999998877776654 57899999854 333
Q ss_pred EEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1043 CYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
..+.. .....+.+++... +.++.+=...+.|...|..+|+.
T Consensus 512 ~~~~~-----------~~~~~P~glav~~--~~ly~tD~~~~~i~~~~k~~G~~ 552 (628)
T 4a0p_A 512 IVLED-----------SNILQPVGLTVFE--NWLYWIDKQQQMIEKIDMTGREG 552 (628)
T ss_dssp EEEEC-----------SSCSCEEEEEEET--TEEEEEETTTTEEEEEETTSSSC
T ss_pred EEEEc-----------CCCCCcEEEEEEC--CEEEEEECCCCeEEEEECcCCCC
Confidence 33331 1122346677644 45666666667787778777664
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.21 E-value=7.2e-09 Score=113.66 Aligned_cols=225 Identities=14% Similarity=0.052 Sum_probs=150.8
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
...+.+|+|++..+++++..++.|..||..+++... + .+...|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 467889999876688888888999999998765421 1 123579999999999987765
Q ss_pred CCCeEEEEEccCCCcceeceeec-c-cccceeEEEEecCCCeEEEEEecC------CCeEEEEecCCCeEEEecCCCCCe
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEGHEAPV 497 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~-~-h~~~v~~l~fs~d~~~~~l~s~s~------d~~i~vWd~~g~~~~~~~~h~~~v 497 (1128)
.+ .|.+||..+++... +.... + ....+++++++|+|+ ++++... .+.|..++ +++. ..+..+....
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~-~g~~-~~~~~~~~~~ 181 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA-KGKV-TKLFADISIP 181 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE-TTEE-EEEEEEESSE
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe-CCcE-EEeeCCCccc
Confidence 44 49999998876432 11111 1 124689999999998 4444331 24555555 5543 3333333456
Q ss_pred EEEeccCCCCccEEEE-EeccCcEEEEecC--CC-Cc---e-e-eecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEE
Q 001190 498 YSICPHHKENIQFIFS-TAIDGKIKAWLYD--TM-GS---R-V-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s-~~~dg~i~~wd~~--~~-~~---~-~-~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~ 568 (1128)
..++|++ +++.++. .+.++.|.+|+++ ++ .. . . .+......+..++++++|.+.++.. +.+.|.+
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVDR 255 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEEE
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEEE
Confidence 7888866 5665544 4557899999986 33 21 1 1 1222345678899999998766654 3678999
Q ss_pred EeCCCCceeeEeccccCCceeEEEEe-CCCCEEEEEECC
Q 001190 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGED 606 (1128)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~d 606 (1128)
||. +++.+..+..+.. .+.+++|+ ++++.|++++..
T Consensus 256 ~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEecC
Confidence 998 6777777765543 68889998 888877666543
No 226
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.20 E-value=2.9e-05 Score=92.09 Aligned_cols=525 Identities=10% Similarity=-0.034 Sum_probs=285.1
Q ss_pred ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE-eCCCeEEEEEccCCCccee
Q 001190 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQ 443 (1128)
Q Consensus 365 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~vwd~~~~~~~~~ 443 (1128)
..+.|+.-++++...... +....-..+..|+|++++..|..+ ..++.|..++++......
T Consensus 13 ~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~- 73 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH- 73 (628)
T ss_dssp ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-
T ss_pred eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-
Confidence 567889999876543211 011123467899999976666655 457889999987654322
Q ss_pred ceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec-CCCCCeEEEeccCCCCccEEEEE-eccCcEE
Q 001190 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFST-AIDGKIK 521 (1128)
Q Consensus 444 ~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~ 521 (1128)
.+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....+++.|. +|.+.++- +..+.|.
T Consensus 74 --v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~g~~~~I~ 149 (628)
T 4a0p_A 74 --VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEWGGKPKID 149 (628)
T ss_dssp --EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEECSSSCEEE
T ss_pred --EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCCCCCCEEE
Confidence 12222245778999887665 4556666788999996666544443 33345688898764 33344443 2356777
Q ss_pred EEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEE
Q 001190 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 522 ~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 601 (1128)
..+++........ ........++++++++.|+.+-. +.+.|...|+..... ..+..... ....+++.. ..++
T Consensus 150 r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~--~~ly 221 (628)
T 4a0p_A 150 RAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ--DYIY 221 (628)
T ss_dssp EEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET--TEEE
T ss_pred EEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC--CEEE
Confidence 7777655444333 34557899999999888877653 577899999876544 33332222 334566654 4555
Q ss_pred EEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEE-EcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCc
Q 001190 602 AVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR-FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1128)
Q Consensus 602 ~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 679 (1128)
... ..+.|...|..+++....+...-. ....+. +++..+. ... +.. ...+.
T Consensus 222 ~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---------------~~n-~C~---------~~ng~ 274 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---------------GWN-ECA---------SSNGH 274 (628)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---------------CCC-TTT---------TTGGG
T ss_pred EecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---------------cce-Eec---------cCCCC
Confidence 554 578888888877766555542211 222332 2221100 000 000 00011
Q ss_pred ceeeeeecc-cccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEec
Q 001190 680 IESVALKVS-ASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP 758 (1128)
Q Consensus 680 i~~~~~s~~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 758 (1128)
...+++..- +.+-++ .+.|-.+
T Consensus 275 C~~~C~~~~~~~~~C~----------------------------C~~g~~l----------------------------- 297 (628)
T 4a0p_A 275 CSHLCLAVPVGGFVCG----------------------------CPAHYSL----------------------------- 297 (628)
T ss_dssp CSSEEEEETTTEEEEE----------------------------CSTTCEE-----------------------------
T ss_pred cchhhhcCCCCCeeEE----------------------------cCCCcEe-----------------------------
Confidence 111222111 111100 0000000
Q ss_pred CCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEE
Q 001190 759 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 838 (1128)
Q Consensus 759 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 838 (1128)
.....+|. .+ ..+++.+. ...|+-..+.... ......... .-..+..++
T Consensus 298 ----~~d~~~C~--~~-~~~Ll~s~-~~~i~~i~l~~~~--------------------~~~~~l~~~---~~~~~~~ld 346 (628)
T 4a0p_A 298 ----NADNRTCS--AP-TTFLLFSQ-KSAINRMVIDEQQ--------------------SPDIILPIH---SLRNVRAID 346 (628)
T ss_dssp ----CTTSSCEE--CC-SSEEEEEE-TTEEEEECCCTTC--------------------CCCEECCCT---TCSCEEEEE
T ss_pred ----cccCCcCc--cc-cceeeeec-cceEEEEeccccc--------------------CceEEEEeh---hcCCceEEE
Confidence 00000111 01 22233322 2233322221100 000000011 234578899
Q ss_pred eccCCCeEEEEe--CCeEEEEECCCceEEEEeeC------CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 839 LSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS------PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 839 ~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~------~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
|.+.+..|..+. .+.|+.++.........+.. ....+..+++....+.+..+-+..+.|.+.+++ |+....
T Consensus 347 ~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~ 425 (628)
T 4a0p_A 347 YDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGV 425 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEE
T ss_pred EecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEE
Confidence 999888777776 57799888765433333322 234678999998445566677788899999986 443333
Q ss_pred c-cccccCeeEEEEcC-CCCEEEEEcCCC--cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cC
Q 001190 911 L-KGHQKRITGLAFST-SLNILVSSGADA--QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ET 984 (1128)
Q Consensus 911 l-~~h~~~V~~l~~s~-d~~~l~s~~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~ 984 (1128)
+ ........++++.| .|.++.+-.... .|...+++.... ..+ .. . .......+++++++..|..++ .+
T Consensus 426 l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l-~~---~-~l~~P~gla~D~~~~~LYw~D~~~~ 499 (628)
T 4a0p_A 426 VLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVL-FF---S-GLSKPIALALDSRLGKLFWADSDLR 499 (628)
T ss_dssp EEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEE-EC---S-SCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEE-Ee---c-cCCCccEEEEeCCCCEEEEEeCCCC
Confidence 3 23345688999999 455545433222 466666654332 111 11 1 115678999999988888776 47
Q ss_pred eEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 985 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 985 ~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.|..+++. |.....+.... ......+++.. +.+..+-...+.|...|..+|+....+.
T Consensus 500 ~I~~~~~d-G~~r~~~~~~~--~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 500 RIESSDLS-GANRIVLEDSN--ILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp EEEEEETT-SCSCEEEECSS--CSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred EEEEEeCC-CCceEEEEcCC--CCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 88888885 33333332211 34456777643 4444444456778888888777555444
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=3.7e-09 Score=127.53 Aligned_cols=192 Identities=13% Similarity=0.111 Sum_probs=134.9
Q ss_pred CCeEEEEECCCceEEEEeeCCCC--------------------------------CeeEEEEcCCCCCEEEEEeCCC---
Q 001190 851 GGKISLFNMMTFKVMTTFMSPPP--------------------------------ASTFLAFHPQDNNIIAIGTEDS--- 895 (1128)
Q Consensus 851 dg~i~vwd~~~~~~~~~~~~~~~--------------------------------~v~~l~~s~~d~~~lasg~~dg--- 895 (1128)
++.|+.||..+|+.+..+..... ....+++++ ++.+|..+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 46677777777777766653221 123578888 677777777664
Q ss_pred ----------------cEEEEecccceeeecccc--cc-------cCeeEEEEcCCC---CEEEEEcCCCcEEEEECCCC
Q 001190 896 ----------------TIHIYNVRVDEVKSKLKG--HQ-------KRITGLAFSTSL---NILVSSGADAQLCVWSIDTW 947 (1128)
Q Consensus 896 ----------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~---~~l~s~~~Dg~i~iwd~~~~ 947 (1128)
.|..+|..+|+.+..++. |. ....-+....+| +.++.++.+|.|.++|..+|
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999998876543 21 122233444577 68899999999999999999
Q ss_pred cccceeEEeecC----------------------------CCC-CCCccEEEEcCCCCEEEEEe----------------
Q 001190 948 EKRKSVTIHIPA----------------------------GKT-PTGDTRVQFNADQVRMLVVH---------------- 982 (1128)
Q Consensus 948 ~~~~~~~~~~~~----------------------------~~~-~~~v~~v~~s~d~~~l~~~~---------------- 982 (1128)
+.+......... +.. ...-..++|+|++.++++..
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 976554422100 000 00112578999988887742
Q ss_pred ----------------------------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEE
Q 001190 983 ----------------------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1034 (1128)
Q Consensus 983 ----------------------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vw 1034 (1128)
.+.|..||+.+++.+-.+.. ..++....++.++.++++++.||.+++|
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----VSPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----CCCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 16799999999998776654 3445556678889999999999999999
Q ss_pred ecCCCceEEEeCC
Q 001190 1035 DADTLRLRCYIAP 1047 (1128)
Q Consensus 1035 d~~~~~~~~~~~~ 1047 (1128)
|+++|+.+..+..
T Consensus 504 D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 504 HAATGEKLWEAPT 516 (677)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCceeeeeeC
Confidence 9999999998873
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=8.7e-09 Score=112.99 Aligned_cols=224 Identities=8% Similarity=0.052 Sum_probs=145.6
Q ss_pred eeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc
Q 001190 834 VPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 911 (1128)
....+|+|+++.++..+ ++.|..||..+++.. .+. ....+.++++++ +++++++. . ..|.+||..+++.....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence 46789999866555444 688999999887654 233 346799999999 78777654 3 44999999887653221
Q ss_pred c---c-cccCeeEEEEcCCCCEEEEEcCC----CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-
Q 001190 912 K---G-HQKRITGLAFSTSLNILVSSGAD----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 982 (1128)
Q Consensus 912 ~---~-h~~~V~~l~~s~d~~~l~s~~~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 982 (1128)
. + ....+..++++++|+++++...+ +...||.+.+++.. ...... .....++|+|||+.++++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~-~~~~~~------~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-KLFADI------SIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-EEEEEE------SSEEEEEECTTSCEEEEEET
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE-EeeCCC------cccCCeEEcCCCCEEEEEEC
Confidence 1 1 12468899999999977765422 23344444344322 111111 3456899999999877764
Q ss_pred -cCeEEEEecC--Cc-ccc--cccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCccc
Q 001190 983 -ETQLAIYDAS--KM-ERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVL 1056 (1128)
Q Consensus 983 -d~~i~v~d~~--~~-~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1056 (1128)
++.|.+|+.. ++ ... ..+............++++++|+++++...++.|.+||. +++.+..+.
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~---------- 267 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE---------- 267 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE----------
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE----------
Confidence 6789999986 55 321 111111111355688999999997777766789999998 677766665
Q ss_pred CCCCccceEEEEEe-cCCCCEE-EEEECC
Q 001190 1057 NGSQTVYPLVVAAH-PLEPNQF-AIGLTD 1083 (1128)
Q Consensus 1057 ~~~~~~~~~~~~~~-p~~~~~l-~s~~~d 1083 (1128)
.....+.+++|. | +++.| ++...+
T Consensus 268 --~~~~~~~~~af~g~-d~~~L~vt~~~~ 293 (326)
T 2ghs_A 268 --VPGKQTTCPAFIGP-DASRLLVTSARE 293 (326)
T ss_dssp --CSCSBEEEEEEEST-TSCEEEEEEBCT
T ss_pred --CCCCCcEEEEEecC-CCCEEEEEecCC
Confidence 122357899998 6 45554 555444
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.19 E-value=3.9e-09 Score=127.70 Aligned_cols=325 Identities=10% Similarity=0.039 Sum_probs=186.4
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCCe----------E-EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW----------C-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----------i-~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
..+++++.++.|..+|..+++.+..+...... + ..+++ ++..+++++ .++.|+.+|..+|+.+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~----~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGV----LDGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEEC----TTSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEc----cCCEEEEEECCCCCEe
Confidence 47778888899999999998888877654321 0 11222 345666665 3889999999999998
Q ss_pred eEeccc-cCCceeEEEEeC--CCCEEEEEE------CCCcEEEEECCCCeeeEEEecCCC--------------------
Q 001190 578 RTYAGF-RKKSNGVVQFDT--TQNHFLAVG------EDSQIKFWDMDNVNILTSTDAEGG-------------------- 628 (1128)
Q Consensus 578 ~~~~~~-~~~~v~~~~~~~--~~~~l~~~s------~dg~i~iwd~~~~~~~~~~~~~~~-------------------- 628 (1128)
..+... .......+..+| .+..+++++ .+|.|+.||..+|+.+..+.....
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 887653 110101111111 134555544 378999999999999887753110
Q ss_pred ---------CCCcceEEEcCCCCEEEEEEcCCc-------------------EEEEEcccCccccccccCCccccccCcc
Q 001190 629 ---------LPNLPRLRFSKEGNLLAVTTADNG-------------------FKILANAIGLRSLRAVENPPFEALRTPI 680 (1128)
Q Consensus 629 ---------~~~v~~v~~sp~~~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~~~~~~~i 680 (1128)
......++++|++.++++++.++. |..||..+++..... +..
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~-~~~--------- 294 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY-QTT--------- 294 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE-ESS---------
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee-ecC---------
Confidence 001135778888888888887764 444444444221110 000
Q ss_pred eeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCC
Q 001190 681 ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPES 760 (1128)
Q Consensus 681 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 760 (1128)
.-..|+..
T Consensus 295 --------------------------------------------------------~~d~wd~~---------------- 302 (689)
T 1yiq_A 295 --------------------------------------------------------PGDAWDYT---------------- 302 (689)
T ss_dssp --------------------------------------------------------TTCCSCCC----------------
T ss_pred --------------------------------------------------------Cccccccc----------------
Confidence 00111110
Q ss_pred CCCcccEEEEEEecCcc---eEEEeeccceeEeeeccccCCCCCCceeeeeccc--eec----cCCCcccc---------
Q 001190 761 TDTSSKVVRLLYTNSAV---GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQ--HWL----PSSGLLMA--------- 822 (1128)
Q Consensus 761 ~~~~~~i~~l~~s~~g~---~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~--------- 822 (1128)
......-.....+|+ .++.++.+|.++++|...++. ....... -|. ..++..+.
T Consensus 303 --~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~------l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~ 374 (689)
T 1yiq_A 303 --ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL------LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWK 374 (689)
T ss_dssp --CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE------EEEEESSCCSSEEEEETTTTEEEECHHHHCTTT
T ss_pred --CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE------eccccccccccccccCccCCCcccchhhccccC
Confidence 011111112222454 677788888888888655432 1110000 010 01111000
Q ss_pred -----ccccCCCCCCCeeEEEeccCCCeEEEEe----------------------------------------------C
Q 001190 823 -----NDVAGVNLEEAVPCIALSKNDSYVMSAT----------------------------------------------G 851 (1128)
Q Consensus 823 -----~~~~~~~~~~~v~~~~~s~dg~~la~~~----------------------------------------------d 851 (1128)
....+..-...-..++|+|+..++++.. +
T Consensus 375 ~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~ 454 (689)
T 1yiq_A 375 NGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWS 454 (689)
T ss_dssp SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCE
T ss_pred CCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcc
Confidence 0000000011223478888887776641 2
Q ss_pred CeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC-eeEEEEcCCCCEE
Q 001190 852 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLNIL 930 (1128)
Q Consensus 852 g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l 930 (1128)
|.|..||+.+++.+..+..+.. +..-.++. .+.+++.|+.||.|+.||.++|+.+.+++...+. ..-+.|..||+..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 6799999999999988875543 33334555 5678899999999999999999999888755333 2457778888744
Q ss_pred E
Q 001190 931 V 931 (1128)
Q Consensus 931 ~ 931 (1128)
+
T Consensus 533 v 533 (689)
T 1yiq_A 533 V 533 (689)
T ss_dssp E
T ss_pred E
Confidence 4
No 230
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.17 E-value=5.3e-10 Score=122.65 Aligned_cols=183 Identities=13% Similarity=0.141 Sum_probs=133.2
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 425 (1128)
.++.+++++... ++++|+.+ .+.+|++......... .. ...+......+.+ |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~-------~~--~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITS-------DS--TPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHS-------SS--CCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhcc-------cc--ccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 699999999998 77888777 5566998654311000 00 0011112334666 999999 99999999
Q ss_pred CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCCCeEEEeccC
Q 001190 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~~v~~~~~~~ 504 (1128)
.++.|++||+.+..... ....|..++.++.+.+. -+++++.||.|.+|| .++.... +...|.+++|++
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765333 35567788888887755 267788899999999 6666543 445799999987
Q ss_pred CCCccEEEEEeccCcEEEEecCCCCc--eeee------c---CCCCeEEEEEEcCCCCeEEEeee
Q 001190 505 KENIQFIFSTAIDGKIKAWLYDTMGS--RVDY------D---APGHWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 505 ~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~------~---~~~~~i~~~~~s~~g~~l~~~~~ 558 (1128)
+| ++.|..||.+++|+.+.... +.++ . .+...|.++.|.+++.++++-..
T Consensus 173 --kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 --SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp --SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred --Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 44 67899999999998877664 4444 2 35679999999999998887553
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.17 E-value=8.5e-10 Score=120.96 Aligned_cols=266 Identities=7% Similarity=-0.064 Sum_probs=168.5
Q ss_pred cEEEEeeccC----eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe--------
Q 001190 358 TLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-------- 425 (1128)
Q Consensus 358 ~lla~gs~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-------- 425 (1128)
+++++...++ +|.+.|..+++.+.. +-.|. .+ .+++||||+++.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~------------------i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGH------------------SLGAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEE------------------EEECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEE------------------EeCCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 3555555455 888999999988753 12222 34 799999999999886
Q ss_pred --CCCeEEEEEccCCCcceeceeecc-c----ccceeEEEEecCCCeEEEEEec--CCCeEEE--Ee-cCCCeEEEecCC
Q 001190 426 --TKHLIQLYSYAGSNDLRQHSQIDA-H----VGAVNDLAFAYPNKLLCVVTCG--DDKLIKV--WE-LSGRKLFNFEGH 493 (1128)
Q Consensus 426 --~d~~i~vwd~~~~~~~~~~~~~~~-h----~~~v~~l~fs~d~~~~~l~s~s--~d~~i~v--Wd-~~g~~~~~~~~h 493 (1128)
.++.|.+||..+++.+..+. +.+ . ......++|+|||++ ++.+. .+..|.+ +| .+ +..+.--
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36889999999998877542 210 0 134678999999995 44443 3567888 99 55 4444311
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCC----CCcee-----eecCCCCeEEEEEEcCCCCeEEEeeeccCCCc
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT----MGSRV-----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~----~~~~~-----~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~ 564 (1128)
+. ..+.+.+. ..+++.+.||.+.+.++++ ..... .+.....+. . ++++..++..+ . +
T Consensus 166 -~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs----~-~ 231 (368)
T 1mda_H 166 -SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV----A-S 231 (368)
T ss_dssp -SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB----S-S
T ss_pred -Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc----C-C
Confidence 11 12223322 3455667788888787765 11111 111122233 3 56666666654 2 6
Q ss_pred eEEEEeCCCCc--eeeEeccc---------cCCceeEEEEeCCCCEEEEEEC---------CCcEEEEECCCCeeeEEEe
Q 001190 565 FLVEWNESEGT--IKRTYAGF---------RKKSNGVVQFDTTQNHFLAVGE---------DSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 565 ~i~~wd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~ 624 (1128)
.+.+.|..++. .+..+... .......+++++++++++++.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 78888886542 22222111 0011223789999998887643 2356699999999988886
Q ss_pred cCCCCCCcceEEEcCCCCE-EEEEE-cCCcEEEEEcccCccccccc
Q 001190 625 AEGGLPNLPRLRFSKEGNL-LAVTT-ADNGFKILANAIGLRSLRAV 668 (1128)
Q Consensus 625 ~~~~~~~v~~v~~sp~~~~-l~~~~-~dg~i~iw~~~~~~~~~~~~ 668 (1128)
... ....++|+|||+. +++.. .++.|.++|+.+. +..+.+
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I 353 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSV 353 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEEC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEE
Confidence 543 3689999999984 55555 4899999999987 333333
No 232
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.16 E-value=1.5e-05 Score=94.41 Aligned_cols=524 Identities=8% Similarity=-0.020 Sum_probs=269.4
Q ss_pred CCCeEEEEEccCCC-cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCe--EEEecCCCCCeEEEec
Q 001190 426 TKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK--LFNFEGHEAPVYSICP 502 (1128)
Q Consensus 426 ~d~~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~--~~~~~~h~~~v~~~~~ 502 (1128)
....|+..++.... ... .+.........++|.+.+.. ++++-...+.|..++.+|.. ...+...-.....+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 35568888887642 111 12233445789999997774 44555557889888855542 2233333356788888
Q ss_pred cCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc
Q 001190 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1128)
Q Consensus 503 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1128)
.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..-.. ....|...++...........
T Consensus 92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECS
T ss_pred Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeC
Confidence 653 33456666677899999987655444443445567889999986666655321 245677777654333222222
Q ss_pred ccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccC
Q 001190 583 FRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
.......++++++++.|+.+. ..+.|...|+............ ......+++..+ .+.++-...+.|...|..++
T Consensus 169 -~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 169 -EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred -CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 222567799999888877775 5678999998765544333211 123467777655 33344445678888888776
Q ss_pred ccccccccCCccccccCcceeee-eecccccccccCCCCcceecccCCCCCcccccCCCC---CCCCCCCCcccCCCCCC
Q 001190 662 LRSLRAVENPPFEALRTPIESVA-LKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDP---TSRSMDKPRTVDDVTDK 737 (1128)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~i~~~~-~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~d~~ 737 (1128)
... ..+.... . ....+. +.+..+-.. .+ ++....+.+. ..++......+.+.+|.
T Consensus 245 ~~~-~~i~~~~----~-~p~~i~v~~~~~qp~~----~n-----------~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~ 303 (619)
T 3s94_A 245 EGL-REIHSDI----F-SPMDIHAFSQQRQPNA----TN-----------PCGIDNGGCSHLCLMSPVKPFYQCACPTGV 303 (619)
T ss_dssp CCC-EECCSCC----C-CCSEEEECCGGGSCCC----CC-----------TTTTTGGGCSSEEEECSSTTSEEEECCTTC
T ss_pred ccc-EEEecCC----C-CCcEEEEEccccCCCc----cc-----------cccCCCCcccceEECCCCCCCceEeCCchh
Confidence 332 2221110 0 112222 222211100 00 0000000000 00000000000000000
Q ss_pred CCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCC
Q 001190 738 PKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 817 (1128)
Q Consensus 738 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1128)
. + .....+|. .....+|+.+ ..+.|+..++.....
T Consensus 304 ~----l-------------------~~d~~~C~--~~~~~~Ll~~-~~~~i~~i~l~~~~~------------------- 338 (619)
T 3s94_A 304 K----L-------------------LENGKTCK--DGATELLLLA-RRTDLRRISLDTPDF------------------- 338 (619)
T ss_dssp C----B-------------------CTTSSCBC--SSCSEEEEEE-ESSCEEEEESSSTTC-------------------
T ss_pred e----e-------------------cccCcccC--CCCceEEEEE-cccceEEEecCCCcc-------------------
Confidence 0 0 00000000 0011223322 233444444322110
Q ss_pred CccccccccCCCCCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001190 818 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1128)
Q Consensus 818 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg 895 (1128)
......+. .-..+..++|.+.+..|..++ .+.|+.++.........+...-.....+++...+++++.+-+..+
T Consensus 339 -~~~~~~~~---~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~ 414 (619)
T 3s94_A 339 -TDIVLQLE---DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTD 414 (619)
T ss_dssp -CCEECCCS---CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred -ceeEEecc---ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCC
Confidence 00000111 234477899998777776665 678999998764443334333456778999864666777777788
Q ss_pred cEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEc--CCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC
Q 001190 896 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG--ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 973 (1128)
Q Consensus 896 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 973 (1128)
.|.+.++........+...-....++++.|...+|.... ....|...+++.... ..+ . .. .......+++++
T Consensus 415 ~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l-~---~~-~l~~P~GlalD~ 488 (619)
T 3s94_A 415 RIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVL-V---NT-SLGWPNGLALDY 488 (619)
T ss_dssp EEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEE-E---CS-SCSCEEEEEEET
T ss_pred cEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEE-E---eC-CCCCCeeeEEcc
Confidence 999999875432222222335678999999744444333 235677667664332 111 1 11 115678999999
Q ss_pred CCCEEEEEe--cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCce
Q 001190 974 DQVRMLVVH--ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRL 1041 (1128)
Q Consensus 974 d~~~l~~~~--d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~ 1041 (1128)
++..|..++ .+.|..+++............ ......+++. +.+|+.+. ..+.|...|..+|..
T Consensus 489 ~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~---l~~P~glav~--~~~ly~tD~~~~~I~~~~k~~g~~ 554 (619)
T 3s94_A 489 DEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK---IPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAER 554 (619)
T ss_dssp TTTEEEEEETTTTEEEEEESSSCCCEEEEECC---CCSSCCEEEE--TTEEEEECTTSSCEEEEESSSCCE
T ss_pred cCCEEEEEECCCCEEEEEecCCCceEEEeccC---CCCcEEEEEE--CCEEEEeecCCCeEEEEEcCCCce
Confidence 888888775 567888887533322111111 1223355553 33566554 456688788777743
No 233
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.15 E-value=8.3e-09 Score=112.14 Aligned_cols=236 Identities=11% Similarity=0.071 Sum_probs=153.4
Q ss_pred ccCCCcceEEEEEccCCC-EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEE
Q 001190 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1128)
Q Consensus 402 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vW 480 (1128)
+..+.......+|+|+|+ +++++..++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+|
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRS 112 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEE
Confidence 344555678899999999 5566667889999998 444 22 2445667799999999998 56666666899999
Q ss_pred ecCCCeEEEec---CC-CCCeEEEeccCCCCccEEEE----Eec-------------cCcEEEEecCCCCceeeecCCCC
Q 001190 481 ELSGRKLFNFE---GH-EAPVYSICPHHKENIQFIFS----TAI-------------DGKIKAWLYDTMGSRVDYDAPGH 539 (1128)
Q Consensus 481 d~~g~~~~~~~---~h-~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~~wd~~~~~~~~~~~~~~~ 539 (1128)
+.+|+...... +. ...+..+++.+ +|.+.++ |.. .+.|..||..++...... ...
T Consensus 113 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 113 DADGQAHLLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp CTTSCEEEEECEETTEECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred CCCCCEEEEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 95566432221 11 12356778755 6677776 331 245666666554443332 334
Q ss_pred eEEEEEEcCCCCeEEEeeecc--CCCceEEEEeCCCCcee--eEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECC
Q 001190 540 WCTTMLYSADGSRLFSCGTSK--DGDSFLVEWNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~--~~~~~i~~wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~ 615 (1128)
....++|+||++.|+.+.... .+.+.|++|++..+... ..+..........++++++|+. .+++.+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~- 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS- 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-
Confidence 568899999999887765310 01268999998765421 1221111224556889999984 444444 5999998
Q ss_pred CCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEE
Q 001190 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1128)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 654 (1128)
.++.+..+.... .+..++|+++++.|.+++.++..+
T Consensus 266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 566666666543 478899999999998888764433
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.15 E-value=6.1e-09 Score=125.96 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=117.2
Q ss_pred EEEEcCCCCCEEEEEeCCCc-------------------EEEEecccceeeecccc--cc-------cCeeEEEEcCCCC
Q 001190 877 FLAFHPQDNNIIAIGTEDST-------------------IHIYNVRVDEVKSKLKG--HQ-------KRITGLAFSTSLN 928 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~ 928 (1128)
.++++| +..+++.+..++. |.-||..+|+.+..++. |. .+........+|+
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 678888 6778888887764 99999999998876653 21 1222223333665
Q ss_pred ---EEEEEcCCCcEEEEECCCCcccceeEEee-----------------------cCCC----------CCCCccEEEEc
Q 001190 929 ---ILVSSGADAQLCVWSIDTWEKRKSVTIHI-----------------------PAGK----------TPTGDTRVQFN 972 (1128)
Q Consensus 929 ---~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~-----------------------~~~~----------~~~~v~~v~~s 972 (1128)
.++.++.+|.++++|..+|+.+....... .... -...-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999998763322110 0000 00112237899
Q ss_pred CCCCEEEEEe----------------------------------------------cCeEEEEecCCcccccccccCCCC
Q 001190 973 ADQVRMLVVH----------------------------------------------ETQLAIYDASKMERIRQWTPQDAL 1006 (1128)
Q Consensus 973 ~d~~~l~~~~----------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~h 1006 (1128)
|+..++++.. ++.|..||+.+++.+-.+..+
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--- 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--- 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---
Confidence 9888877641 267999999999987776543
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 1007 SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1007 ~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.++..-.++..|.++++|+.||.|+.||.++|+.+..+.
T Consensus 475 -~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 475 -TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp -SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 233344677788999999999999999999999998887
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=6.4e-09 Score=125.47 Aligned_cols=323 Identities=11% Similarity=0.065 Sum_probs=188.8
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCCe-----------EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-----------i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
..+++++.++.|..+|..+++.+..+...... ...+++ ++..+++++ .++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~----~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGA----WDGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEEC----TTSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEc----CCCEEEEEECCCCCEE
Confidence 46777777888888998888888776654320 112233 455666665 3889999999999999
Q ss_pred eEeccc-cC---Ccee-EEEEeCCCCEEEEEEC------CCcEEEEECCCCeeeEEEecCCCC-----------------
Q 001190 578 RTYAGF-RK---KSNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDAEGGL----------------- 629 (1128)
Q Consensus 578 ~~~~~~-~~---~~v~-~~~~~~~~~~l~~~s~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 629 (1128)
..+... .. ..+. ...+ .+..+++++. +|.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 888765 20 0111 1112 2356666553 799999999999998877653321
Q ss_pred -------------CCcceEEEcCCCCEEEEEEcCCc-------------------EEEEEcccCccccccccCCcccccc
Q 001190 630 -------------PNLPRLRFSKEGNLLAVTTADNG-------------------FKILANAIGLRSLRAVENPPFEALR 677 (1128)
Q Consensus 630 -------------~~v~~v~~sp~~~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~~~~~ 677 (1128)
.....++++|++.+++++..++. |..+|..+++..... +.
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~-~~------- 301 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY-QE------- 301 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-ES-------
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE-ec-------
Confidence 01135678888888888776643 333333333111100 00
Q ss_pred CcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEe
Q 001190 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTM 757 (1128)
Q Consensus 678 ~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~ 757 (1128)
..-..|+..
T Consensus 302 ----------------------------------------------------------~~~d~wd~~------------- 310 (677)
T 1kb0_A 302 ----------------------------------------------------------TPGDNWDYT------------- 310 (677)
T ss_dssp ----------------------------------------------------------STTCCSCCC-------------
T ss_pred ----------------------------------------------------------CCCcccccc-------------
Confidence 000011111
Q ss_pred cCCCCCcccEEEEEEecCc---ceEEEeeccceeEeeeccccCCCCCCceeeeec------cceeccCCCcccc------
Q 001190 758 PESTDTSSKVVRLLYTNSA---VGLLALGSNGVQKLWKWHRNEQNPSGKATASAV------PQHWLPSSGLLMA------ 822 (1128)
Q Consensus 758 ~~~~~~~~~i~~l~~s~~g---~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------ 822 (1128)
......-+....+| ..++.++.+|.++++|...++. ..... ..-+| .++..+.
T Consensus 311 -----~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~------l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~ 378 (677)
T 1kb0_A 311 -----STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF------ISAKNFVPVNWASGYD-KHGKPIGIAAARD 378 (677)
T ss_dssp -----CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE------EEEEESSCCSSEEEEC-TTSCEEECGGGGC
T ss_pred -----cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE------eccccccccCcccccC-CCCceeeccccCc
Confidence 01111122233466 5677888889888888665432 11110 00111 2222111
Q ss_pred -----ccccCCCCCCCeeEEEeccCCCeEEEEe-C-------------------------------------------Ce
Q 001190 823 -----NDVAGVNLEEAVPCIALSKNDSYVMSAT-G-------------------------------------------GK 853 (1128)
Q Consensus 823 -----~~~~~~~~~~~v~~~~~s~dg~~la~~~-d-------------------------------------------g~ 853 (1128)
....+..-...-..++|+|++.++++.. + |.
T Consensus 379 ~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 458 (677)
T 1kb0_A 379 GSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR 458 (677)
T ss_dssp TTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE
T ss_pred CCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccE
Confidence 0000000011123678899888877643 1 67
Q ss_pred EEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-cCeeEEEEcCCCCEEEE
Q 001190 854 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVS 932 (1128)
Q Consensus 854 i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s 932 (1128)
|..||+.+++.+..+.. ...+....+.. ++.+++.++.||.+++||..+|+.+.++.... ....-+.|..+|+.++.
T Consensus 459 l~A~D~~tG~~~W~~~~-~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 459 LLAWDPVAQKAAWSVEH-VSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEeCCCCcEEeecCC-CCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 99999999999888763 33344455666 66788889999999999999999998887443 23345667788875543
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.12 E-value=3.9e-08 Score=110.59 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=99.7
Q ss_pred EEEEecCCCeEEEEe-cCCCeEEEecCC---------CCCeE-EEeccCCCCccEEEEEeccCcEEEEecCCCCceeeec
Q 001190 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGH---------EAPVY-SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd-~~g~~~~~~~~h---------~~~v~-~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 535 (1128)
.++.++.++.|..+| .+|+.+...... ...+. .... ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 577788899999999 789988666542 12232 2222 33578888999999999999988887766
Q ss_pred CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCc----eeEEEEeCCCCEEEEEECCCcEEE
Q 001190 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKF 611 (1128)
Q Consensus 536 ~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~s~dg~i~i 611 (1128)
..........+. + ..+++++ .++.|..+|..+|+.+..+....... ....... +..+++++.++.|..
T Consensus 131 ~~~~~~~~p~~~-~-~~v~v~~----~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS-D-GLVLIHT----SNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE-T-TEEEEEC----TTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE-C-CEEEEEc----CCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 554322222222 3 3555554 37899999999999888776543210 0122222 457888888999999
Q ss_pred EECCCCeeeEEEec
Q 001190 612 WDMDNVNILTSTDA 625 (1128)
Q Consensus 612 wd~~~~~~~~~~~~ 625 (1128)
+|..+++.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999988877654
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.07 E-value=1.6e-08 Score=114.82 Aligned_cols=274 Identities=15% Similarity=0.080 Sum_probs=170.8
Q ss_pred CCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEE-e-CCCCEEEEEE------------------CCC
Q 001190 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-D-TTQNHFLAVG------------------EDS 607 (1128)
Q Consensus 548 ~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~s------------------~dg 607 (1128)
+||+++..+.. .+..|.+.|+.+.+....+.-........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 48888888653 57789999999999888554433335677787 5 9999999985 246
Q ss_pred cEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeec
Q 001190 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1128)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 687 (1128)
.+.+.|.++.+.+..+...+. ...++++|+|+++++.+.+..--.+ +...... ..
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~~~~--------i~~~~~~-------~~------- 230 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMT--------LPEMTAA-------EM------- 230 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSS--------HHHHTCC-------SE-------
T ss_pred eEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcccCcc--------hhhcccc-------cc-------
Confidence 799999999999988876442 4678899999999998865321000 0000000 00
Q ss_pred ccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccE
Q 001190 688 SASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKV 767 (1128)
Q Consensus 688 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i 767 (1128)
..+.+.+... .
T Consensus 231 ------------------------------------------------d~v~V~~~~~-----------------~---- 241 (595)
T 1fwx_A 231 ------------------------------------------------DHIVVFNIAE-----------------I---- 241 (595)
T ss_dssp ------------------------------------------------EEEEEEEHHH-----------------H----
T ss_pred ------------------------------------------------ceEEEeeccc-----------------e----
Confidence 0000000000 0
Q ss_pred EEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEE
Q 001190 768 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 847 (1128)
Q Consensus 768 ~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 847 (1128)
..+.++|++... +.+.+.|....+ +......+. -.....++.++|||++++
T Consensus 242 --~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip---vg~~PhGv~~sPDGk~v~ 292 (595)
T 1fwx_A 242 --EKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP---IANNPHGCNMAPDKKHLC 292 (595)
T ss_dssp --HHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE---EESSCCCEEECTTSSEEE
T ss_pred --eEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe---cCCCceEEEEcCCCCEEE
Confidence 001122322221 224444432100 111000111 233566899999999999
Q ss_pred EEe--CCeEEEEECCCce------------EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc---------
Q 001190 848 SAT--GGKISLFNMMTFK------------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV--------- 904 (1128)
Q Consensus 848 ~~~--dg~i~vwd~~~~~------------~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~--------- 904 (1128)
+++ +++|.++|+.+.+ ...+.. -......++|++ +|...++...|++|.+||+.+
T Consensus 293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~ 370 (595)
T 1fwx_A 293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEK 370 (595)
T ss_dssp EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred EeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence 887 6889999999763 233332 334678999999 776667778999999999987
Q ss_pred -ceeeecccccccCe-----eEEEEcCCCCEEEEEc---CCCcE----------EEEECCCCcc
Q 001190 905 -DEVKSKLKGHQKRI-----TGLAFSTSLNILVSSG---ADAQL----------CVWSIDTWEK 949 (1128)
Q Consensus 905 -~~~~~~l~~h~~~V-----~~l~~s~d~~~l~s~~---~Dg~i----------~iwd~~~~~~ 949 (1128)
.+.+.++..|-.+. .++.++|||++|++.. .|+.+ .++|+.+++.
T Consensus 371 ~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 371 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred cceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 45566665554332 3345689999999864 35432 8899976654
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=1.7e-11 Score=136.97 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=130.9
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC-ee
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-IT 919 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~ 919 (1128)
++..+++++ ||.|..||..+|+.+.++.. +.+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 566777777 89999999999999988876 4555555666 7778888889999999999999887666544221 11
Q ss_pred -EEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEEecCCcccc
Q 001190 920 -GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERI 997 (1128)
Q Consensus 920 -~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~d~~~~~~~ 997 (1128)
+..+. ++..+++++.|+.|+.||..+|+.+....... ...++|++..++++ .++.|+.||..+|+.+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----------ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----------cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 11111 34567778889999999999998765543321 13456677777765 5899999999999876
Q ss_pred cccccCCCCCCCeEEEEEeeCC---CEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCC
Q 001190 998 RQWTPQDALSAPISCAVYSCNS---QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1074 (1128)
Q Consensus 998 ~~~~~~~~h~~~v~~l~~s~dg---~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1074 (1128)
..+.... ....+++.+. ..+++++.||.|+.||..+|+.+..... ..++ +....+++ ++
T Consensus 154 W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-----------~~pv-~~~~~~~~-dg 215 (369)
T 2hz6_A 154 WNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-----------ASPV-VAFYVWQR-EG 215 (369)
T ss_dssp CEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-----------SSCE-EEEEECTT-SS
T ss_pred EeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-----------CCce-EEEEEecC-Cc
Confidence 6554321 1223334432 5577788999999999999999887762 1111 11233333 33
Q ss_pred CEEEE--EECCCcEEEEcCCCCC----CCcccCC
Q 001190 1075 NQFAI--GLTDGSVKVMEPSESE----GKWGVSP 1102 (1128)
Q Consensus 1075 ~~l~s--~~~dg~i~iWd~~~~~----~~w~~~~ 1102 (1128)
...+. ...++.++.+|..+|+ ..|....
T Consensus 216 ~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~ 249 (369)
T 2hz6_A 216 LRKVMHINVAVETLRYLTFMSGEVGRITKWKYPF 249 (369)
T ss_dssp CEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred eEeccceeecccceeeeehhcCCcccceeeeecc
Confidence 32110 1125567788888887 7787654
No 239
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.04 E-value=0.00025 Score=89.80 Aligned_cols=609 Identities=10% Similarity=0.037 Sum_probs=287.2
Q ss_pred EEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC----CCEEEE
Q 001190 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----GNYVGV 423 (1128)
Q Consensus 348 ~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~las 423 (1128)
.|+++-.+| +|..||..|.=.+|.+.....-...-+++ .. --..-++|..++.-.. ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~-----------~~-~~~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVA-----------ME-TFTNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEE-----------EE-EECCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEe-----------Ee-eecCcCCceeEEEEccCCCCCCeEEE
Confidence 455555566 67888888877888876542100000000 00 1123467887777432 235555
Q ss_pred Ee---CCCeEEEEEccCCCcceeceeecccccceeEEEEec---CCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCe
Q 001190 424 AF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPV 497 (1128)
Q Consensus 424 ~~---~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~---d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v 497 (1128)
++ .+|.+++..-.-+-.......+.+ ...++.+.... .+. +|+.+..+.+ .|+..+|..+..+.. .
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~~e~veev~~-~--- 467 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLNGEEVEETEL-M--- 467 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEETTEEEEECC-T---
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEeCCccccccc-c---
Confidence 44 467788765432211111112332 34566665432 234 5665555655 455544444443321 1
Q ss_pred EEEeccCCCCccEEEEEe---------ccCcEEEEecCCCCceeeecCCC-CeEEEEEEcCCCCeEEEeeeccCCCceEE
Q 001190 498 YSICPHHKENIQFIFSTA---------IDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1128)
Q Consensus 498 ~~~~~~~~~~~~~l~s~~---------~dg~i~~wd~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~~~~~~~~i~ 567 (1128)
.|. .+...|+++. ....|++.+.+.......+.... ..|...+.+. .+++.+. .+.+.
T Consensus 468 ---gf~--~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~ 535 (1158)
T 3ei3_A 468 ---GFV--DDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALY 535 (1158)
T ss_dssp ---TCC--SSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEE
T ss_pred ---ccc--CCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEE
Confidence 111 1222333332 12345666654444444444333 3566666543 3555553 35677
Q ss_pred EEeCCCCceeeEeccccCCceeEEEEeCC------CCEEEEEEC-CCcEEEEECCCCeeeEEEecCCCCCCcceEEEc--
Q 001190 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTT------QNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS-- 638 (1128)
Q Consensus 568 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-- 638 (1128)
++.+..+++.......-...+.|+++.+. +.++++|.. |++|+|+++.+.+.+........ ....++.+.
T Consensus 536 ~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~ 614 (1158)
T 3ei3_A 536 YLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTF 614 (1158)
T ss_dssp EEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEE
T ss_pred EEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEe
Confidence 77776654333222222346888888753 368899986 99999999998777765554321 123344332
Q ss_pred CCCCEEEEEEcCCcEEEEEccc--Cccccc--cccCCccccccCcceeeeeecccccccccCCCCcceecccCC------
Q 001190 639 KEGNLLAVTTADNGFKILANAI--GLRSLR--AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP------ 708 (1128)
Q Consensus 639 p~~~~l~~~~~dg~i~iw~~~~--~~~~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~------ 708 (1128)
....+|.+|-.||.+.-+.++. +.-... ..-+ ..++.-..+...|..-+...+...+.+-....
T Consensus 615 ~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG------~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~ 688 (1158)
T 3ei3_A 615 ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG------TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSN 688 (1158)
T ss_dssp TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC------SSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEE
T ss_pred CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC------CCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEec
Confidence 2345788999999987665542 211000 0111 01222222222222111111111111100000
Q ss_pred C--CCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccc
Q 001190 709 V--RPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 786 (1128)
Q Consensus 709 ~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 786 (1128)
. .....+........++| ++. ..++.++|..+... .......++ -...+..++++|+.+.++.+..+.
T Consensus 689 l~~~~v~~~~~F~se~~~~g--~v~-~~~~~LrI~~i~~~---~~~~~~~ip----L~~Tprri~y~~~~~~~~v~~~~~ 758 (1158)
T 3ei3_A 689 VNLKEVNYMCPLNSDGYPDS--LAL-ANNSTLTIGTIDEI---QKLHIRTVP----LYESPRKICYQEVSQCFGVLSSRI 758 (1158)
T ss_dssp BSSSCCCEEEEECCSSSTTE--EEE-ECSSCEEEEEECCS---SSEEEEEEE----CSSEEEEEEEEGGGTEEEEEEEEE
T ss_pred cChHHhceEeccCcccCCCc--EEE-EcCCceEEEEeccc---CCeeEEEEe----CCCCceEEEEcCCCCEEEEEEEec
Confidence 0 00000111111111222 121 22245777666432 223333333 234677788888777666555432
Q ss_pred eeEeeeccccCCCCCCceeeeeccceeccCCCc--cccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceE
Q 001190 787 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL--LMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV 864 (1128)
Q Consensus 787 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~ 864 (1128)
.. ++. ++.. ...... ........ .....+....--++..+-.--.-+.|++.|..+++.
T Consensus 759 ~~--~~~-------~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~ 819 (1158)
T 3ei3_A 759 EV--QDT-------SGGT---------TALRPSASTQALSSSV-SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEV 819 (1158)
T ss_dssp EE--ECS-------SSSE---------EESSCCHHHHCSEEEE-CCCCCC----------CCCEEEEEEEEEEETTTCCE
T ss_pred cc--ccc-------cccc---------chhhhhhhhhhhhhcc-cccccccccccCchhhcCCceeeEEEEEEeCCCCeE
Confidence 11 110 0000 000000 00000000 000000000000000000000124588888888887
Q ss_pred EEEeeCCCC-CeeEEE---EcCCCCCEEEEEe----------CCCcEEEEecccceeeecc-cccccCeeEEEEcCCCCE
Q 001190 865 MTTFMSPPP-ASTFLA---FHPQDNNIIAIGT----------EDSTIHIYNVRVDEVKSKL-KGHQKRITGLAFSTSLNI 929 (1128)
Q Consensus 865 ~~~~~~~~~-~v~~l~---~s~~d~~~lasg~----------~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~ 929 (1128)
+..+.-... .+.+++ |..+...++++|+ ..|.|++|++..+++.... ....++|++++-- +|++
T Consensus 820 i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~L 898 (1158)
T 3ei3_A 820 LHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKL 898 (1158)
T ss_dssp EEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEE
T ss_pred EEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEE
Confidence 766653333 344444 4332357888887 3478999999755432211 1235778888744 3555
Q ss_pred EEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEE--ecCCcccccccccCCCC
Q 001190 930 LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIY--DASKMERIRQWTPQDAL 1006 (1128)
Q Consensus 930 l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~--d~~~~~~~~~~~~~~~h 1006 (1128)
|+.. ...|++|++...+.+. ...... ..+..+.....+.++++|+ -..+.++ +....+.. .+ ..+.+
T Consensus 899 la~i--g~~l~vy~l~~~~~L~-~~~~~~-----~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~-~~-a~D~~ 968 (1158)
T 3ei3_A 899 LASI--NSTVRLYEWTTEKELR-TECNHY-----NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFE-EI-ARDFN 968 (1158)
T ss_dssp EEEE--TTEEEEEEECTTSCEE-EEEEEC-----CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEE-EE-EECCS
T ss_pred EEEc--CCEEEEEECCCCceEE-EEeecc-----ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEE-EE-Eeecc
Confidence 5544 4789999998765433 111111 1233333444577888887 4555554 43332222 12 22333
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 1007 SAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 1007 ~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
...++++.|-.++ .++.+..+|.+.+.....
T Consensus 969 ~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 969 PNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred cccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 7889999997665 677799999999997654
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.03 E-value=1.9e-08 Score=110.93 Aligned_cols=179 Identities=11% Similarity=0.037 Sum_probs=107.5
Q ss_pred eEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee
Q 001190 455 NDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY 534 (1128)
Q Consensus 455 ~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 534 (1128)
.+..+..+|. +..++.++.|..||.+|+.+.........+.++.+. .++ .++.++.+ +..+|. +++....+
T Consensus 23 ~~~~~d~~g~---l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~--~~g-~l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 23 SSPILAKNGT---IYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIG--KDG-TIYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCCEECTTSC---EECSSTTTTTEEECTTSCEEESSCGGGEEEECCEET--TTT-EECCSSCE--EEEECC-CGGGGGGS
T ss_pred cCceEccCCe---EEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEe--cCC-cEEEecCc--EEEECC-CCcEEEEE
Confidence 3445556665 677778889999997777766555444444555553 244 56666655 777875 44443333
Q ss_pred cCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEEC
Q 001190 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1128)
Q Consensus 535 ~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~ 614 (1128)
...........+. + ..+..++ .++.|..+|.. ++....+..... .+..+...+++. ++.++.++.|+.+|.
T Consensus 94 ~~~~~~~~~~~~~-~-~~l~v~t----~~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~ 164 (330)
T 3hxj_A 94 DTKKAIVSDFTIF-E-DILYVTS----MDGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINP 164 (330)
T ss_dssp CC-----CCEEEE-T-TEEEEEC----TTSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECT
T ss_pred ECCCCcccCceEE-C-CEEEEEe----cCCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECC
Confidence 3333222333333 4 4455554 36789999988 777666654433 455566666665 666778899999998
Q ss_pred CCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEE
Q 001190 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1128)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~ 657 (1128)
. ++.......... .+.++.+.+++.+++.. +.|..+|
T Consensus 165 ~-g~~~~~~~~~~~--~~~~~~~d~~g~l~v~t---~~l~~~d 201 (330)
T 3hxj_A 165 D-GTEKWRFKTNDA--ITSAASIGKDGTIYFGS---DKVYAIN 201 (330)
T ss_dssp T-SCEEEEEECSSC--CCSCCEECTTCCEEEES---SSEEEEC
T ss_pred C-CCEeEEEecCCC--ceeeeEEcCCCEEEEEe---CEEEEEC
Confidence 8 777666654322 45666666666644433 5566655
No 241
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.02 E-value=0.00031 Score=88.92 Aligned_cols=570 Identities=9% Similarity=0.041 Sum_probs=284.2
Q ss_pred ceEEEEEccCCCEEEEEeCCCeEEEEEccCCCc-----ceeceeecccccceeEEEEecCC---CeEEEEEec---CCCe
Q 001190 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPN---KLLCVVTCG---DDKL 476 (1128)
Q Consensus 408 ~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h~~~v~~l~fs~d~---~~~~l~s~s---~d~~ 476 (1128)
.-.|+++-.+| +|+.|+..|.=.+|.+..... +....++ ..-++|.+++..... +. .|++++ .+|.
T Consensus 328 ~~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gs 404 (1158)
T 3ei3_A 328 IAECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGS 404 (1158)
T ss_dssp CCSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCE
T ss_pred CccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCe
Confidence 34667776555 788888877777777764322 1222222 345789888876421 22 234332 4578
Q ss_pred EEEEe--cCCCeEEEe--cCCCCCeEEEeccC-CCCccEEEEEeccCcEEEEecCCCCceeeecC-----CCCeEEEEEE
Q 001190 477 IKVWE--LSGRKLFNF--EGHEAPVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-----PGHWCTTMLY 546 (1128)
Q Consensus 477 i~vWd--~~g~~~~~~--~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----~~~~i~~~~~ 546 (1128)
+++.. ..-..+..+ .+ -..++.+.... +....+|+.+..+.+ +++.+.. +....... ....+.+-.+
T Consensus 405 L~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~-e~veev~~~gf~~~~~TL~~~~l 481 (1158)
T 3ei3_A 405 LRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNG-EEVEETELMGFVDDQQTFFCGNV 481 (1158)
T ss_dssp EEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEET-TEEEEECCTTCCSSSCEEEEEEE
T ss_pred EEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeC-CcccccccccccCCCCcEEEEEc
Confidence 99887 333333333 32 24566665421 223457777666665 5565532 12222211 1112222222
Q ss_pred cCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC
Q 001190 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1128)
Q Consensus 547 s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~ 626 (1128)
.++ .++=.. ...|++.+...+..+..+....+..|...+.. +.+++.++ ++.+.++.+..++.......
T Consensus 482 -~~~-~ivQVt-----~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~- 550 (1158)
T 3ei3_A 482 -AHQ-QLIQIT-----SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHT- 550 (1158)
T ss_dssp -TTT-EEEEEE-----SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEE-
T ss_pred -CCC-eEEEEe-----cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeeccc-
Confidence 222 444333 45578888776667777765554456666554 35676665 67888888876653322211
Q ss_pred CCCCCcceEEEcCC------CCEEEEEEc-CCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCC
Q 001190 627 GGLPNLPRLRFSKE------GNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (1128)
Q Consensus 627 ~~~~~v~~v~~sp~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 699 (1128)
.-...|.|+++.|. +.++++|.. |++++|+++.+-.. .....-.. .....++.+..-+.
T Consensus 551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~-~~~~~L~~----~~~p~si~l~~~~~--------- 616 (1158)
T 3ei3_A 551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL-LHKEMLGG----EIIPRSILMTTFES--------- 616 (1158)
T ss_dssp ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE-EEEEECCS----SCCEEEEEEEEETT---------
T ss_pred CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe-EEEEECCC----CCCCcEEEEEEeCC---------
Confidence 11236899998863 479999996 99999999975422 11111000 01122222221100
Q ss_pred cceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCcee---EEEecCCCCCcccEEEEEEecCc
Q 001190 700 NCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCR---LVTMPESTDTSSKVVRLLYTNSA 776 (1128)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~---~~~~~~~~~~~~~i~~l~~s~~g 776 (1128)
..++..+-.||.+..+.+.. ..+.+. ...+ -..++.=..+...|
T Consensus 617 --------------------------~~~L~igl~dG~l~~~~~d~--~tg~l~d~r~~~L-----G~~pv~L~~~~~~~ 663 (1158)
T 3ei3_A 617 --------------------------SHYLLCALGDGALFYFGLNI--ETGLLSDRKKVTL-----GTQPTVLRTFRSLS 663 (1158)
T ss_dssp --------------------------EEEEEEEETTSEEEEEEECT--TTCCEEEEEEEEC-----CSSCCEEEEEESSS
T ss_pred --------------------------CcEEEEEeCCCeEEEEEEcC--CCCccccceeEEc-----CCCceEEEEEeeCC
Confidence 01112222222221111110 000000 0000 01122222222222
Q ss_pred ceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCee-EEEeccC--CCeEEEEeCCe
Q 001190 777 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP-CIALSKN--DSYVMSATGGK 853 (1128)
Q Consensus 777 ~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~d--g~~la~~~dg~ 853 (1128)
..-+.+..+.-..++.- .+......+ ....+. ...|+.. ..-++..+++.
T Consensus 664 ~~~V~a~s~rp~liy~~-----------------------~~~l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~ 716 (1158)
T 3ei3_A 664 TTNVFACSDRPTVIYSS-----------------------NHKLVFSNV----NLKEVNYMCPLNSDGYPDSLALANNST 716 (1158)
T ss_dssp CEEEEEESSSCEEEEES-----------------------SSSEEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSC
T ss_pred ceeEEEECCCCEEEEEc-----------------------CCceEEecc----ChHHhceEeccCcccCCCcEEEEcCCc
Confidence 22222222222222210 011110011 111222 2334332 23455555666
Q ss_pred EEEEECCCce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC-------------------------------------
Q 001190 854 ISLFNMMTFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTED------------------------------------- 894 (1128)
Q Consensus 854 i~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d------------------------------------- 894 (1128)
++|..++... .++++. -...+..++++| ..+.++.+..+
T Consensus 717 LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1158)
T 3ei3_A 717 LTIGTIDEIQKLHIRTVP-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTA 794 (1158)
T ss_dssp EEEEEECCSSSEEEEEEE-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC-----
T ss_pred eEEEEecccCCeeEEEEe-CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccccccc
Confidence 8887765432 223332 234677888887 55544433311
Q ss_pred ------------CcEEEEecccceeeecccc-cccCeeEEE---EcCC-CCEEEEEc----------CCCcEEEEECCCC
Q 001190 895 ------------STIHIYNVRVDEVKSKLKG-HQKRITGLA---FSTS-LNILVSSG----------ADAQLCVWSIDTW 947 (1128)
Q Consensus 895 ------------g~v~iwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-~~~l~s~~----------~Dg~i~iwd~~~~ 947 (1128)
+.|++.|-.+.+.+..+.- ....+.+++ |..+ ..+++.|. ..|.|.++++..+
T Consensus 795 ~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~ 874 (1158)
T 3ei3_A 795 PHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG 874 (1158)
T ss_dssp -----CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT
T ss_pred CchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC
Confidence 2356666665555443321 122344443 4433 45777765 2478999999754
Q ss_pred cccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEec
Q 001190 948 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1027 (1128)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~ 1027 (1128)
+. ........ .+++.+++-- +| +|+++-+..+++|++...+.++ ..... -..|..+.....|.++++|+.
T Consensus 875 kL-~lv~~~~v----~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~--~~~i~~~~l~~~~~~I~vgD~ 944 (1158)
T 3ei3_A 875 KL-QTVAEKEV----KGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNH--YNNIMALYLKTKGDFILVGDL 944 (1158)
T ss_dssp EE-EEEEEEEE----SSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEE--CCCSCEEEEEEETTEEEEEES
T ss_pred EE-EEEEEEEc----CCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeec--cccEEEEEEeccCCEEEEEEh
Confidence 32 22221111 1556665533 23 7788888999999998765444 11111 122334444446889999998
Q ss_pred CCcEEEE--ecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1028 DGNIGVF--DADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1028 dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
-..|.++ +...+++...-. .-.+.+++++.|-. ...++.+..+|.+.+.....
T Consensus 945 ~~Sv~~~~y~~~~~~L~~~a~-----------D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 945 MRSVLLLAYKPMEGNFEEIAR-----------DFNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp SBCEEEEEEETTTTEEEEEEE-----------CCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred hheEEEEEEEcCCCeEEEEEe-----------ecccccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 7777765 444444433333 24566788898875 35889999999999997664
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.01 E-value=3.6e-08 Score=107.76 Aligned_cols=236 Identities=14% Similarity=0.130 Sum_probs=152.3
Q ss_pred EEe--CCCCcEEEEeeccCeEEEEEccCCc--eecccccccccccccCccccceeccCC-CcceEEEEEccCCCEEEEEe
Q 001190 351 DFH--PSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYVGVAF 425 (1128)
Q Consensus 351 ~fs--pdg~~lla~gs~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~las~~ 425 (1128)
.++ ++++++++.|-.++.|.|+|+.+.. ....+.++ ...+.... ...-..+..+||| .++++.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie-----------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~ 155 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIE-----------PEEVKKVSGYSRLHTVHCGPDA-IYISAL 155 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEEC-----------HHHHHHHHCEEEEEEEEECSSC-EEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeec-----------hhhcccccCCCcccceeECCCe-EEEEcC
Confidence 457 8999888889999999999997541 11101110 00001011 1245567889999 666665
Q ss_pred CC------CeEEEEEccCCCcceeceeecccc-cceeEEEEecCCCeEEEEEec-------------------CCCeEEE
Q 001190 426 TK------HLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG-------------------DDKLIKV 479 (1128)
Q Consensus 426 ~d------~~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~fs~d~~~~~l~s~s-------------------~d~~i~v 479 (1128)
.+ |.|.+.|.++++.+..... .... .--+.+-|+|+++ .+++.. .+.+|.+
T Consensus 156 g~~~g~~~g~v~vlD~~T~~v~~~~~~-~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 156 GNEEGEGPGGILMLDHYSFEPLGKWEI-DRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp EETTSCSCCEEEEECTTTCCEEEECCS-BCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred CCcCCCCCCeEEEEECCCCeEEEEEcc-CCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 54 7899999999887765321 1222 2345688899999 677774 4789999
Q ss_pred Ee-cCCCeEEEecCC-C-CCeEEEeccCCCCccEEEEEec------cCcEEEEecCCCCcee--ee--cC-------C--
Q 001190 480 WE-LSGRKLFNFEGH-E-APVYSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRV--DY--DA-------P-- 537 (1128)
Q Consensus 480 Wd-~~g~~~~~~~~h-~-~~v~~~~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~--~~--~~-------~-- 537 (1128)
|| .+++.+.++..- . .....+.|..+++++++++++. +++|.+|..+.+.... .+ .. .
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence 99 777777777642 1 2344565644567788888774 5688777665421111 10 00 0
Q ss_pred -------CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC---CceeeEeccccC---------C----ceeEEEEe
Q 001190 538 -------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRK---------K----SNGVVQFD 594 (1128)
Q Consensus 538 -------~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~---------~----~v~~~~~~ 594 (1128)
......+.+|+||++|.++.. +.+.|.++|+.. .+++..+..... . .-..+.++
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 234678999999999998876 678999999863 344444433200 0 24568999
Q ss_pred CCCCEEEEEE
Q 001190 595 TTQNHFLAVG 604 (1128)
Q Consensus 595 ~~~~~l~~~s 604 (1128)
|||++|+++.
T Consensus 390 pDGk~LyVaN 399 (462)
T 2ece_A 390 RDGRRVYVTN 399 (462)
T ss_dssp TTSSEEEEEC
T ss_pred CCCCEEEEEc
Confidence 9999999886
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.01 E-value=6.1e-08 Score=105.98 Aligned_cols=237 Identities=13% Similarity=0.099 Sum_probs=149.8
Q ss_pred cCcceEEEeec-cceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEe-C
Q 001190 774 NSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-G 851 (1128)
Q Consensus 774 ~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-d 851 (1128)
.+++++++.+. ++.|.++|+......+.-.. .++ ..++.. -. .......+..+||| +++++. +
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k----~ie-----~~~~~~--~~---g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIK----VIE-----PEEVKK--VS---GYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEE----EEC-----HHHHHH--HH---CEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeee----eec-----hhhccc--cc---CCCcccceeECCCe-EEEEcCCC
Confidence 77888877665 78999998754322111100 000 000000 00 01134567888999 666553 3
Q ss_pred ------CeEEEEECCCceEEEEeeCCCC---CeeEEEEcCCCCCEEEEEe-------------------CCCcEEEEecc
Q 001190 852 ------GKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGT-------------------EDSTIHIYNVR 903 (1128)
Q Consensus 852 ------g~i~vwd~~~~~~~~~~~~~~~---~v~~l~~s~~d~~~lasg~-------------------~dg~v~iwd~~ 903 (1128)
|.|.++|.++++.+.++..... --..+.|+| +++.+++.. .+.+|.+||+.
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 6799999999999998863222 133588899 888887774 36899999999
Q ss_pred cceeeeccccc-c-cCeeEEEE--cCCCCEEEEEc------CCCcEEEEECCCCcccceeEEeecCC----C--------
Q 001190 904 VDEVKSKLKGH-Q-KRITGLAF--STSLNILVSSG------ADAQLCVWSIDTWEKRKSVTIHIPAG----K-------- 961 (1128)
Q Consensus 904 ~~~~~~~l~~h-~-~~V~~l~~--s~d~~~l~s~~------~Dg~i~iwd~~~~~~~~~~~~~~~~~----~-------- 961 (1128)
+++.+.++..- . .....+.| +|+++++..++ .+++|.+|..+.++......+..... .
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 99888777642 1 23345555 99999888766 45688887776543222222211110 0
Q ss_pred --CCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCc---ccccccccCCC-----C------CCCeEEEEEeeCCCEEE
Q 001190 962 --TPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKM---ERIRQWTPQDA-----L------SAPISCAVYSCNSQLVF 1023 (1128)
Q Consensus 962 --~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~---~~~~~~~~~~~-----h------~~~v~~l~~s~dg~~l~ 1023 (1128)
.......+.+|+||++|.++. .+.|.+||+... +.+..+...-. | ...-..+++||||++|+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence 014578899999999999975 789999998633 33333322100 0 11357899999999999
Q ss_pred EEe
Q 001190 1024 ATF 1026 (1128)
Q Consensus 1024 t~~ 1026 (1128)
++.
T Consensus 397 VaN 399 (462)
T 2ece_A 397 VTN 399 (462)
T ss_dssp EEC
T ss_pred EEc
Confidence 988
No 244
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.98 E-value=9.1e-08 Score=107.55 Aligned_cols=233 Identities=10% Similarity=0.032 Sum_probs=149.4
Q ss_pred CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCe---
Q 001190 843 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI--- 918 (1128)
Q Consensus 843 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V--- 918 (1128)
+..+++++ ++.|..+|..+|+.+..............+. + ..+++++.++.|..+|..+|+.+..........
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 44455555 8999999999999987776544333333343 3 367778889999999999998876665332111
Q ss_pred --eEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCC-CC---c-cEEEEcCCCCEEEEEecCeEEEEec
Q 001190 919 --TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP-TG---D-TRVQFNADQVRMLVVHETQLAIYDA 991 (1128)
Q Consensus 919 --~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~---v-~~v~~s~d~~~l~~~~d~~i~v~d~ 991 (1128)
...... +..++.++.++.|..+|..+|+.+............. .. + ..... .++..++.+.++.+..+|.
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~~g~l~~~d~ 256 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAYNGNLTALDL 256 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECTTSCEEEEET
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEecCcEEEEEEC
Confidence 122222 3467778889999999999998765544322111000 00 0 11111 1344444445899999999
Q ss_pred CCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEec
Q 001190 992 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1071 (1128)
Q Consensus 992 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1071 (1128)
.+++.+..... .....+.. ++..|++++.++.|..+|..+|+.+........ ..... ..+
T Consensus 257 ~tG~~~w~~~~-----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~--------~~~~~-~~~---- 316 (376)
T 3q7m_A 257 RSGQIMWKREL-----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH--------RLLTS-PVL---- 316 (376)
T ss_dssp TTCCEEEEECC-----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT--------SCCCC-CEE----
T ss_pred CCCcEEeeccC-----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC--------CcccC-CEE----
Confidence 99987755442 22334433 567788888999999999999998877652110 00001 112
Q ss_pred CCCCEEEEEECCCcEEEEcCCCCCCCcccCC
Q 001190 1072 LEPNQFAIGLTDGSVKVMEPSESEGKWGVSP 1102 (1128)
Q Consensus 1072 ~~~~~l~s~~~dg~i~iWd~~~~~~~w~~~~ 1102 (1128)
.+..++.++.+|.|.++|..+++..|....
T Consensus 317 -~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 317 -YNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp -ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred -ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 246788899999999999999999887654
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.96 E-value=8.3e-08 Score=105.66 Aligned_cols=266 Identities=11% Similarity=0.034 Sum_probs=172.2
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
...+.++.+.++|. + ..|+.+ |..+|. +|+.+... ..+.......++. +..|..
T Consensus 59 ~~~~~~~~~~~~g~-l-~v~t~~--l~~~d~-~g~~~~~~-------------------~~~~~~~~~~~~~--~~~l~v 112 (330)
T 3hxj_A 59 EIIECRPSIGKDGT-I-YFGSDK--VYAINP-DGTEKWRF-------------------DTKKAIVSDFTIF--EDILYV 112 (330)
T ss_dssp GEEEECCEETTTTE-E-CCSSCE--EEEECC-CGGGGGGS-------------------CC-----CCEEEE--TTEEEE
T ss_pred CCcccceEEecCCc-E-EEecCc--EEEECC-CCcEEEEE-------------------ECCCCcccCceEE--CCEEEE
Confidence 34467888888887 3 445444 888885 55544321 1111122223333 556777
Q ss_pred EeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEecc
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~ 503 (1128)
++.++.|..+|.. ++.... ...+...+.++...+++. ++.++.++.|..+|..|+.+..+......+.++.+.
T Consensus 113 ~t~~~~l~~~d~~-g~~~~~---~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d 185 (330)
T 3hxj_A 113 TSMDGHLYAINTD-GTEKWR---FKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIG 185 (330)
T ss_dssp ECTTSEEEEECTT-SCEEEE---EECSSCCCSCCEECTTSC---EEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEEC
T ss_pred EecCCEEEEEcCC-CCEEEE---EcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEc
Confidence 8888999999988 664432 333455577778877886 566777899999994488877776555556666653
Q ss_pred CCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccc
Q 001190 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1128)
Q Consensus 504 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 583 (1128)
.++. ++.++ +.|..+| .++............+.++...++|...+.. .++.+..+|. +++.+..+...
T Consensus 186 --~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t-----~~~gl~~~~~-~g~~~~~~~~~ 253 (330)
T 3hxj_A 186 --KDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTS-----LDGHLYAINP-DGTEKWRFKTG 253 (330)
T ss_dssp --TTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEE-----TTTEEEEECT-TSCEEEEEECS
T ss_pred --CCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEc-----CCCeEEEECC-CCCEeEEeeCC
Confidence 2444 55555 8888998 6666666666666678888888888655543 2567888874 56666665543
Q ss_pred cCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEEEEEccc
Q 001190 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1128)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 660 (1128)
.. .+..+.+.+++ .|..++.+|.|..+|. +++.+....... ..+.++...+++. |..++.+|.+++.....
T Consensus 254 ~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 254 KR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS--WIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS--CCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC--ccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 32 34445555444 6778888889999996 677766665433 2567777777776 56688899998876543
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.96 E-value=1.5e-08 Score=115.04 Aligned_cols=239 Identities=7% Similarity=0.033 Sum_probs=167.1
Q ss_pred EEecc-----CCCeEEEEe--CCeEEEEECCCceEEEEeeCC-CCCeeEEEE-c-CCCCCEEEEEe--------------
Q 001190 837 IALSK-----NDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAF-H-PQDNNIIAIGT-------------- 892 (1128)
Q Consensus 837 ~~~s~-----dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~-s-~~d~~~lasg~-------------- 892 (1128)
..+|. ||+++.+.. ++.|.+.|+.+.++...+.-. ......+++ + | +++++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence 55555 899998876 567999999999988855433 245788888 5 8 788887774
Q ss_pred ----CCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCC-------------------------------
Q 001190 893 ----EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA------------------------------- 937 (1128)
Q Consensus 893 ----~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg------------------------------- 937 (1128)
.++.+.+.|.++.+.+.++.--. .-..++++|||+++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 34579999999988887776322 346788999999999887543
Q ss_pred -------cEEEEECCC--Ccc-cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCcc----------
Q 001190 938 -------QLCVWSIDT--WEK-RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKME---------- 995 (1128)
Q Consensus 938 -------~i~iwd~~~--~~~-~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~---------- 995 (1128)
.|.|.|..+ ++. +..++.. ....++.++|||++++++. +..|.++|+.+.+
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 477777776 433 3344443 4567899999999999975 7899999999663
Q ss_pred --cccccccCCCCCCCeEEEEEeeCCCEEE-EEecCCcEEEEecCC----------CceEEEeCCCCCCCCcccCCCCcc
Q 001190 996 --RIRQWTPQDALSAPISCAVYSCNSQLVF-ATFCDGNIGVFDADT----------LRLRCYIAPSTYLSPSVLNGSQTV 1062 (1128)
Q Consensus 996 --~~~~~~~~~~h~~~v~~l~~s~dg~~l~-t~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1128)
.+..... ......++|++|| +++ +...|+.|.+||+++ ...+.++.-.. . .+|..
T Consensus 321 ~~v~~~v~v----G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y-q------pGh~~ 388 (595)
T 1fwx_A 321 SAVVAEPEL----GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-Q------PGHLK 388 (595)
T ss_dssp GGEEECCBC----CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-C------EEEEE
T ss_pred cceEEEcCC----CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc-c------cccce
Confidence 2223322 5678999999999 555 466899999999987 55666666211 0 02222
Q ss_pred ceEEEEEecCCCCEEEEEECCC--cE-----------EEEcCCCCCCC
Q 001190 1063 YPLVVAAHPLEPNQFAIGLTDG--SV-----------KVMEPSESEGK 1097 (1128)
Q Consensus 1063 ~~~~~~~~p~~~~~l~s~~~dg--~i-----------~iWd~~~~~~~ 1097 (1128)
...++..+| |+++|+++..-. .+ .++|++.++++
T Consensus 389 ~~~g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 389 TVMGETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp ETTTTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred eccceEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 222345567 688777765433 23 77888776654
No 247
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.96 E-value=9.3e-10 Score=122.78 Aligned_cols=189 Identities=7% Similarity=-0.043 Sum_probs=113.8
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCCCC
Q 001190 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1128)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h~~ 495 (1128)
++..+++++.||.|..||..+|+.+-. +.. +.+.+..+..++. ++++++.|+.|+.|| .+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 578899999999999999999987654 333 4566666777887 677888999999999 78988777654422
Q ss_pred CeEEEeccCCC-CccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 496 PVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 496 ~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
... ..++.- ++..+++++.|+.|+.||..+++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 111111 33578889999999999999988887766543 2345678888888764 789999999999
Q ss_pred ceeeEeccccCCceeEEEEeCCC---CEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 575 TIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
+.+..+.... .....+..+. ..+++++.||.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 9877665321 1222333332 5678889999999999999998887764
No 248
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.94 E-value=0.00029 Score=83.34 Aligned_cols=481 Identities=8% Similarity=-0.031 Sum_probs=242.9
Q ss_pred ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEe-CCCeEEEEEccCCCccee
Q 001190 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQ 443 (1128)
Q Consensus 365 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~vwd~~~~~~~~~ 443 (1128)
....|+.-++........ .+...-..+..++|++.+..|..+. ..+.|..+++++......
T Consensus 16 ~~~~I~~i~~~~~~~~~~------------------~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~ 77 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN 77 (619)
T ss_dssp CSSBEEEECCC---------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE
T ss_pred ccccEEEEeCCCCcceEE------------------EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE
Confidence 567888888875431110 1222344678999999777776665 467898999876532111
Q ss_pred ceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec-CCCCCeEEEeccCCCCccEEEEE-eccCcEE
Q 001190 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFST-AIDGKIK 521 (1128)
Q Consensus 444 ~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~ 521 (1128)
.+..-......+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....+++.+. +|.++++- +..+.|.
T Consensus 78 --v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~ 153 (619)
T 3s94_A 78 --VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIE 153 (619)
T ss_dssp --EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEE
T ss_pred --EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEE
Confidence 12223356889999997665 5566667789999997776654443 33445677888664 23344443 1245676
Q ss_pred EEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEE
Q 001190 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1128)
Q Consensus 522 ~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 601 (1128)
..+++.................+++++++..|+.+-. +.+.|...|+..........+... ....+++..+ .++
T Consensus 154 r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~--~ly 227 (619)
T 3s94_A 154 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED--ILY 227 (619)
T ss_dssp EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---TTCCEEEESSSCCEEC----------CCCEEESSS--EEE
T ss_pred EEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---CCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC--EEE
Confidence 6677654444444445567899999998888877643 467899998875444333322211 2334666544 555
Q ss_pred EEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEE-cCCCCEEE---EE---EcCCcEEEEEcccCccccccccCCcc
Q 001190 602 AVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF-SKEGNLLA---VT---TADNGFKILANAIGLRSLRAVENPPF 673 (1128)
Q Consensus 602 ~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-sp~~~~l~---~~---~~dg~i~iw~~~~~~~~~~~~~~~~~ 673 (1128)
.+. ..+.|...|..+++....+.... .....+.+ +|..+-.. +. +.-..+.+.........-....+...
T Consensus 228 ~td~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l 305 (619)
T 3s94_A 228 WTDWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKL 305 (619)
T ss_dssp EECTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCB
T ss_pred EecCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchhee
Confidence 554 67889999998887655543221 12233332 22100000 00 00001111110000000000000000
Q ss_pred ccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCcee
Q 001190 674 EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCR 753 (1128)
Q Consensus 674 ~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 753 (1128)
......+. .....+|+.+.. +.|+..++.. ....
T Consensus 306 --~~d~~~C~--~~~~~~Ll~~~~--------------------------------------~~i~~i~l~~----~~~~ 339 (619)
T 3s94_A 306 --LENGKTCK--DGATELLLLARR--------------------------------------TDLRRISLDT----PDFT 339 (619)
T ss_dssp --CTTSSCBC--SSCSEEEEEEES--------------------------------------SCEEEEESSS----TTCC
T ss_pred --cccCcccC--CCCceEEEEEcc--------------------------------------cceEEEecCC----Cccc
Confidence 00000000 000011110000 1111111110 0000
Q ss_pred EEEecCCCCCcccEEEEEEecCcceEEEee-ccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCC
Q 001190 754 LVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 832 (1128)
Q Consensus 754 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1128)
.+.++. .....+.+++|.+.+..|+.+. ..+.|+.++...... ...+.. .-.
T Consensus 340 ~~~~~~--~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-----------------------~~v~~~--~~~ 392 (619)
T 3s94_A 340 DIVLQL--EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-----------------------QFVVTA--QIA 392 (619)
T ss_dssp CEECCC--SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------------------EEEECS--SCS
T ss_pred eeEEec--cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-----------------------EEEEEC--CCC
Confidence 001110 0234577899998665555554 466777665432110 000000 223
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEecccceeee
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEVKS 909 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~ 909 (1128)
....+++...++.|..+. .+.|.+.++........+...-.....+++.|..|.+..+-. ..+.|...+++......
T Consensus 393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~ 472 (619)
T 3s94_A 393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV 472 (619)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE
Confidence 466899988676666665 578999998755433333334456889999994465555542 23567766665332222
Q ss_pred cccccccCeeEEEEcCCCCEEEEE-cCCCcEEEEECCCCc
Q 001190 910 KLKGHQKRITGLAFSTSLNILVSS-GADAQLCVWSIDTWE 948 (1128)
Q Consensus 910 ~l~~h~~~V~~l~~s~d~~~l~s~-~~Dg~i~iwd~~~~~ 948 (1128)
.....-...++|++.+++..|..+ +..+.|...+++...
T Consensus 473 l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 473 LVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred EEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 222233457799999876666655 445778888887543
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.87 E-value=1.4e-06 Score=92.34 Aligned_cols=202 Identities=8% Similarity=-0.013 Sum_probs=133.7
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
.+..++++++++.|..+. .+.|.+++..+......+.........+++++.++.++++...++.|.+++++.......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999887777765 678999999876544434333356889999984455666666778999999874332212
Q ss_pred ccccccCeeEEEEcCCCCEEEEEcC---CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCe
Q 001190 911 LKGHQKRITGLAFSTSLNILVSSGA---DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQ 985 (1128)
Q Consensus 911 l~~h~~~V~~l~~s~d~~~l~s~~~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~ 985 (1128)
..........++++|++..|..+.. .+.|..++++.... ..+ .. . .......+++++++..|.+++ .+.
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~-~~---~-~~~~P~gia~d~~~~~lyv~d~~~~~ 190 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RIL-AQ---D-NLGLPNGLTFDAFSSQLCWVDAGTHR 190 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEE-EC---T-TCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEE-EE---C-CCCCCcEEEEcCCCCEEEEEECCCCE
Confidence 2212245689999997665544443 36788888865322 111 11 1 114578899999988877765 678
Q ss_pred EEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeC
Q 001190 986 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 986 i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
|.+++............ ......+++ |+..|+.+. ..+.|.++|..+++.+..+.
T Consensus 191 I~~~~~~g~~~~~~~~~----~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 191 AECLNPAQPGRRKVLEG----LQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEETTEEEEEEEEEC----CCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEEecCCCceEEEecC----CCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 99999875443222221 233456655 456666655 56899999999999988886
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.85 E-value=4.9e-06 Score=88.01 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=145.3
Q ss_pred cceEEEEEccCCCEEEEEe-CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCC
Q 001190 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~-~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~ 485 (1128)
..+..++|+|++..|..+. .++.|.+++.+++.... .+.........+++.+++.. +.++....+.|.+++.+|.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4678999999776666554 56889999998754322 12222346789999998664 4556666789999996565
Q ss_pred eEEEecC-CCCCeEEEeccCCCCccEEEEEec---cCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccC
Q 001190 486 KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 486 ~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
....+.. .......+++++. +..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~--~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV--RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT--TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeC--CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 4433322 2245678888663 345544443 368888887654433333233456889999999888777654
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
+.+.|.++|.........+.+.. ....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 47889999997655444433321 23445554 55666665 56899999999999888876432 223578888887
Q ss_pred CC
Q 001190 641 GN 642 (1128)
Q Consensus 641 ~~ 642 (1128)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.80 E-value=1.1e-06 Score=106.07 Aligned_cols=166 Identities=13% Similarity=0.148 Sum_probs=114.8
Q ss_pred EEEEcCCCCCEEEEEeCCC-------------------cEEEEecccceeeecccc--cc-------cCeeEEEEcCCCC
Q 001190 877 FLAFHPQDNNIIAIGTEDS-------------------TIHIYNVRVDEVKSKLKG--HQ-------KRITGLAFSTSLN 928 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~~dg-------------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~ 928 (1128)
.+++++ +..++..++.++ .|.-+|..+|+.+..++. |. .+.....+..+|+
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 578888 667777787766 399999999998876653 22 2333333344665
Q ss_pred ---EEEEEcCCCcEEEEECCCCcccceeEEee------cC---C--------C------------C-CCCccEEEEcCCC
Q 001190 929 ---ILVSSGADAQLCVWSIDTWEKRKSVTIHI------PA---G--------K------------T-PTGDTRVQFNADQ 975 (1128)
Q Consensus 929 ---~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~------~~---~--------~------------~-~~~v~~v~~s~d~ 975 (1128)
.++.++.+|.+.++|..+|+.+....... .. + . . ...-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 68889999999999999998763332110 00 0 0 0 0011237888887
Q ss_pred CEEEEE-------------------------------------ecCeEEEEecCCcccccccccCCCCCCCeEEEEEeeC
Q 001190 976 VRMLVV-------------------------------------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN 1018 (1128)
Q Consensus 976 ~~l~~~-------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~d 1018 (1128)
.++++. .++.|..||..+++.+-..... .+.....+...
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~ 468 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTA 468 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEET
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----CCCcCceeEeC
Confidence 776641 1277999999999987665542 33334456667
Q ss_pred CCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 1019 SQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 1019 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
|.++++++.||.+++||.++|+.+..+..
T Consensus 469 gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 469 GNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCcccchhhhhhcChhheEecC
Confidence 88999999999999999999999998874
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.78 E-value=6.1e-07 Score=92.44 Aligned_cols=202 Identities=12% Similarity=0.056 Sum_probs=141.6
Q ss_pred CeeEEEeccCCCeEEEEe---CCeEEEEECCCceEEEEeeCCCC-CeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee
Q 001190 833 AVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 908 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~-~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~ 908 (1128)
....++|++|+.++++.+ ++.|+++|+.+++.+..+.-... ....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 357899999976555544 46899999999999988763222 22345554 4466666667899999999999998
Q ss_pred ecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEE
Q 001190 909 SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLA 987 (1128)
Q Consensus 909 ~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~ 987 (1128)
.++..-... ...+++||+.|+.+..++.|.++|..+.+....+..... +........+.|. +|+..+.. .++.|.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~~~nele~~-dg~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRVIRLNELEYI-NGEVWANIWQTDCIA 175 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-CcccccceeEEEE-CCEEEEecCCCCeEE
Confidence 888532122 244566888777666788999999999887776665432 1111345678888 77544444 378999
Q ss_pred EEecCCcccccccccCC----------CCCCCeEEEEEeeCCCEEEE-EecCCcEEEEecCCCc
Q 001190 988 IYDASKMERIRQWTPQD----------ALSAPISCAVYSCNSQLVFA-TFCDGNIGVFDADTLR 1040 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~----------~h~~~v~~l~~s~dg~~l~t-~~~dg~i~vwd~~~~~ 1040 (1128)
+.|..+++.+..+.... ........++|+|+++.+++ +...+.|++-++....
T Consensus 176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999999877765420 00235689999999886665 5578889888886643
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.77 E-value=2.1e-06 Score=103.50 Aligned_cols=136 Identities=13% Similarity=0.065 Sum_probs=86.5
Q ss_pred cEEEEEeccCcEEEEecCCCCceeeecCCCCe-----------EEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCcee
Q 001190 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1128)
Q Consensus 509 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-----------i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~ 577 (1128)
..+++++.++.|..+|..+++.+..+...... ...+++ ++..+++++ .++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGT----LDGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEEC----TTSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEc----CCCEEEEEECCCCCEe
Confidence 46777788888999999888888877544221 011222 244566655 3889999999999998
Q ss_pred eEeccccCC---cee-EEEEeCCCCEEEEEEC------CCcEEEEECCCCeeeEEEecCCCC------------------
Q 001190 578 RTYAGFRKK---SNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDAEGGL------------------ 629 (1128)
Q Consensus 578 ~~~~~~~~~---~v~-~~~~~~~~~~l~~~s~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 629 (1128)
..+...... .+. ...+ .+..+++++. +|.|+.+|..+|+.+..+......
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 887653210 111 1111 1345666543 589999999999998887642110
Q ss_pred -----------CCcceEEEcCCCCEEEEEEcCCc
Q 001190 630 -----------PNLPRLRFSKEGNLLAVTTADNG 652 (1128)
Q Consensus 630 -----------~~v~~v~~sp~~~~l~~~~~dg~ 652 (1128)
.....+++.|+..++++++.++.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 01124677777778887776653
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=9.6e-07 Score=90.97 Aligned_cols=222 Identities=11% Similarity=0.017 Sum_probs=149.2
Q ss_pred ceEEEEeeCCCC--CeeEEEEcCCCCCEEEEEeC--CCcEEEEecccceeeecccccc-cCeeEEEEcCCCCEEEEEcCC
Q 001190 862 FKVMTTFMSPPP--ASTFLAFHPQDNNIIAIGTE--DSTIHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVSSGAD 936 (1128)
Q Consensus 862 ~~~~~~~~~~~~--~v~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~~~D 936 (1128)
.+.+.++. |.. ....++|++ ++.++++.+. ++.|+++|+.+++.+..+.-.. .....+++.. ++..++.-.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecC
Confidence 35566665 443 357999999 6766665543 6799999999999888764221 1223455552 3445556678
Q ss_pred CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCcccccccccCCC--CCCCeEEE
Q 001190 937 AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDA--LSAPISCA 1013 (1128)
Q Consensus 937 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~--h~~~v~~l 1013 (1128)
+.+.++|..+++.+..+... . . ....+++||+.++++. ++.|.++|..+.+.+..+..... .-..++.+
T Consensus 86 ~~v~viD~~t~~v~~~i~~g--~----~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ--M----K--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC--S----S--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred CEEEEEECCCCcEEEEEECC--C----C--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 99999999998877665433 1 1 1244667888777765 78899999999888877765321 01246788
Q ss_pred EEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCc-ccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1014 VYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS-VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1014 ~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
.|. ||+..+....++.|.+-|..+++.+..+......... .-.+....-+..++|+|+...+++++...+++.+-++.
T Consensus 158 e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 158 EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 888 7765444546889999999999999998732100000 00011123568999999656678888899999998887
Q ss_pred CCC
Q 001190 1093 ESE 1095 (1128)
Q Consensus 1093 ~~~ 1095 (1128)
+.+
T Consensus 237 ~~~ 239 (266)
T 2iwa_A 237 LVR 239 (266)
T ss_dssp ECC
T ss_pred ccc
Confidence 654
No 255
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.74 E-value=0.0018 Score=79.76 Aligned_cols=572 Identities=12% Similarity=0.061 Sum_probs=298.3
Q ss_pred CcceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceee-cccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cC
Q 001190 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1128)
Q Consensus 406 ~~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~ 483 (1128)
...|.+|.-..+|..- .|+.+| +..||-.. .+..... ......|.++.-..+|. |..|+.+ -+..+| .+
T Consensus 21 ~n~V~~I~qD~~G~lW-igT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g~---lWigT~~-Gl~~yd~~~ 91 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW-IGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNTY---LYMGTDN-GILVYNYRA 91 (758)
T ss_dssp CCCEEEEEECTTSCEE-EEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTTE---EEEEETT-EEEEEETTT
T ss_pred cceEEEEEECCCCCEE-EEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCCc---EEEEeCC-CeEEEeCCC
Confidence 5679999988888544 456777 55666322 1111000 11234688888877775 4455544 478899 55
Q ss_pred CCeEEEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeee----cCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY----DAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 484 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~----~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
++...........|.++.. .++ .|..++.+ -+..+|..+....... ......|.++....+|...+..
T Consensus 92 ~~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt--- 163 (758)
T 3ott_A 92 DRYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT--- 163 (758)
T ss_dssp TEECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE---
T ss_pred CEEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe---
Confidence 4322211112234666653 233 56666655 5777887654432210 1223468888888888766543
Q ss_pred cCCCceEEEEeCCCCceeeEe-ccc---cCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceE
Q 001190 560 KDGDSFLVEWNESEGTIKRTY-AGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~~~~~~~~-~~~---~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1128)
.+-+..++..+++..... ... ....|.++....++..|..|+. +.+..+|..+++........ ...|.++
T Consensus 164 ---~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~~i~~i 237 (758)
T 3ott_A 164 ---YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NNSIKSL 237 (758)
T ss_dssp ---TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--EEEEEEE
T ss_pred ---CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--CCeEEEE
Confidence 234778887776543211 111 1123677777777776666664 56888998877643322111 1247788
Q ss_pred EEcCCCCEEEEEEcCCcEEEEEcccCccccccccC---CccccccCcceeeeeecccccccccCCCCcceecccCCCCCc
Q 001190 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN---PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1128)
Q Consensus 636 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~ 712 (1128)
....+|.+.+ |+. +-+.+++..++. +..... .........|.++....+|...+.+..
T Consensus 238 ~~d~~g~lWi-gT~-~Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~--------------- 298 (758)
T 3ott_A 238 ALDGNGDLLA-GTD-NGLYVYHNDTTP--LQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDY--------------- 298 (758)
T ss_dssp EECTTCCEEE-EET-TEEEEECCTTSC--CEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESS---------------
T ss_pred EEcCCCCEEE-EeC-CceeEEecCCCc--EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCC---------------
Confidence 8777776655 444 457777765542 111111 111122334666666665554432211
Q ss_pred ccccCCCCCCCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEec--CCCCCcccEEEEEEecCcceEEEeeccceeEe
Q 001190 713 PIINGVDPTSRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMP--ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 790 (1128)
Q Consensus 713 ~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l 790 (1128)
| +.++.. .......... ........|.++....+|...+. +.+|. ..
T Consensus 299 -----------------------G-l~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl-~~ 347 (758)
T 3ott_A 299 -----------------------G-ISLSRY-----NSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGL-IR 347 (758)
T ss_dssp -----------------------S-EEEECC-----CC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEE-EE
T ss_pred -----------------------c-cccccc-----CCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcc-ee
Confidence 1 100000 0001111100 00112346888888888875554 45553 33
Q ss_pred eeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEee-
Q 001190 791 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM- 869 (1128)
Q Consensus 791 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~- 869 (1128)
++-..... . ....+...... ..+ ....|.++.-..+|++.+.. ++.|..||..+++...-..
T Consensus 348 ~~~~~~~~----~-----~~~~~~~~~~~---~~l----~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~ 410 (758)
T 3ott_A 348 FTDPAGER----H-----DAIWYRMGDKT---YPL----SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIV 410 (758)
T ss_dssp ESCTTSSC----C-----CCEEECTTCSS---SCC----SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEE
T ss_pred eccccccc----c-----eeEEeccCCcC---CCC----CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecC
Confidence 43211000 0 00011100000 000 23568899888888876654 6679999998876543221
Q ss_pred C-----CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc------eee--ecc---cc-cccCeeEEEEcCCCCEEEE
Q 001190 870 S-----PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD------EVK--SKL---KG-HQKRITGLAFSTSLNILVS 932 (1128)
Q Consensus 870 ~-----~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~------~~~--~~l---~~-h~~~V~~l~~s~d~~~l~s 932 (1128)
. ....|.++...+ ++. |-.|+..+-|.++|..+. ... ..+ .+ ....|.++...++|.+.+.
T Consensus 411 ~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~ 488 (758)
T 3ott_A 411 DNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVL 488 (758)
T ss_dssp CCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEE
T ss_pred CCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEE
Confidence 1 123578888776 555 445776667888886531 111 111 11 1235889999999988774
Q ss_pred EcCCCcEEEEECCCCcccceeEEeecCCCC-CCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeE
Q 001190 933 SGADAQLCVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPIS 1011 (1128)
Q Consensus 933 ~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~ 1011 (1128)
++..+-|..+|..+++... .. ..... ...+.++....+|.+.+.+ .+.+..|+..++.... +....-....|.
T Consensus 489 ~~t~~Gl~~~d~~~~~~~~---~~-~~~~~~~~~~~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~ 562 (758)
T 3ott_A 489 LYNNKGIDKINPRTREVTK---LF-ADELTGEKSPNYLLCDEDGLLWVGF-HGGVMRINPKDESQQS-ISFGSFSNNEIL 562 (758)
T ss_dssp ETTCSSEEEEETTTTEEEE---EC-TTTSCGGGCEEEEEECTTSCEEEEE-TTEEEEECC--CCCCB-CCCCC---CCEE
T ss_pred ccCCCCcEEEeCCCCceEE---ec-CCCcCCCcccceEEECCCCCEEEEe-cCceEEEecCCCceEE-ecccCCCccceE
Confidence 4444558888987754321 11 11111 1356678888888877655 4678899877654322 211101145678
Q ss_pred EEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcC
Q 001190 1012 CAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1091 (1128)
Q Consensus 1012 ~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~ 1091 (1128)
++... +|+ |..++..| |..||..+.+...--. +.. .+ ....+... ...|..|+.+|-+. +++
T Consensus 563 ~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~~~~-----~~~-------~~-~~~~~~~~-~G~l~fG~~~Gl~~-f~p 624 (758)
T 3ott_A 563 SMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQQNM-----TNK-------RF-TSLLFDPK-EDCVYLGGADGFGI-SHS 624 (758)
T ss_dssp EEEEE-TTE-EEEEESSC-EEEEETTTCCEEEC-------CCC-------CC-SEEEEETT-TTEEEEECBSEEEE-EEC
T ss_pred EEEEC-CCC-EEEECCCC-eEEEcCCCceeEEecC-----CCC-------ce-eeeEEECC-CCcEEEecCCceEE-ECh
Confidence 88763 665 45555555 8889998876543211 111 11 12334332 45677778888554 566
Q ss_pred CC
Q 001190 1092 SE 1093 (1128)
Q Consensus 1092 ~~ 1093 (1128)
..
T Consensus 625 ~~ 626 (758)
T 3ott_A 625 NL 626 (758)
T ss_dssp --
T ss_pred hh
Confidence 53
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.70 E-value=4.5e-06 Score=98.32 Aligned_cols=147 Identities=10% Similarity=0.008 Sum_probs=98.6
Q ss_pred cEEEEecccceeeecccc--c--------ccCeeEEEEcCCCC---EEEEEcCCCcEEEEECCCCcccceeEEeecC---
Q 001190 896 TIHIYNVRVDEVKSKLKG--H--------QKRITGLAFSTSLN---ILVSSGADAQLCVWSIDTWEKRKSVTIHIPA--- 959 (1128)
Q Consensus 896 ~v~iwd~~~~~~~~~l~~--h--------~~~V~~l~~s~d~~---~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~--- 959 (1128)
.|..+|..+|+.+-.++. | ..++ -+....+|+ .++.++.+|.+.++|..+|+.+.........
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 599999999988766542 2 1222 122334674 5778899999999999999876554322100
Q ss_pred ----CCCC--------------------------CCccEEEEcCCCCEEEEEe---------------------------
Q 001190 960 ----GKTP--------------------------TGDTRVQFNADQVRMLVVH--------------------------- 982 (1128)
Q Consensus 960 ----~~~~--------------------------~~v~~v~~s~d~~~l~~~~--------------------------- 982 (1128)
.... ..-..++++|+..++++..
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 0000 0013468888877776642
Q ss_pred -----------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 983 -----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 983 -----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
++.+..||..+++.+-.+... ..+....+...+..+++++.||.|+.||.++|+.+.++..
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEecCC----CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 367999999999887665542 2233333445677788899999999999999999998873
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.70 E-value=6.2e-06 Score=96.77 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=106.4
Q ss_pred EEEEcCCCCCEEEEEeCC----------------CcEEEEecccceeeecccccc----------cCeeEEEEc-CCC--
Q 001190 877 FLAFHPQDNNIIAIGTED----------------STIHIYNVRVDEVKSKLKGHQ----------KRITGLAFS-TSL-- 927 (1128)
Q Consensus 877 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~h~----------~~V~~l~~s-~d~-- 927 (1128)
.+++.+ ...++..+..+ +.|.-+|.++|+.+-.++... .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456666 55566666654 379999999999886654321 1221 2222 567
Q ss_pred -CEEEEEcCCCcEEEEECCCCcccceeEEee----------cCCC-----------------------CCCCccEEEEcC
Q 001190 928 -NILVSSGADAQLCVWSIDTWEKRKSVTIHI----------PAGK-----------------------TPTGDTRVQFNA 973 (1128)
Q Consensus 928 -~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~----------~~~~-----------------------~~~~v~~v~~s~ 973 (1128)
+.++.++.+|.+.++|..+|+.+....... ..+. -...-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 467778999999999999998765543211 0000 001113467777
Q ss_pred CCCEEEEE----------------------------------------ecCeEEEEecCCcccccccccCCCCCCCeEEE
Q 001190 974 DQVRMLVV----------------------------------------HETQLAIYDASKMERIRQWTPQDALSAPISCA 1013 (1128)
Q Consensus 974 d~~~l~~~----------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l 1013 (1128)
+..++++. ..+.+..||+.+++.+-..... .+...-
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g 478 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGG 478 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSB
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----CCccCc
Confidence 76666542 1257888888888876655432 122222
Q ss_pred EEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 1014 VYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 1014 ~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
.+.-.+.+++.++.||.++.||.++|+.+.++..
T Consensus 479 ~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 479 TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 2344677888899999999999999999998873
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.65 E-value=2.7e-06 Score=100.12 Aligned_cols=83 Identities=8% Similarity=-0.010 Sum_probs=56.0
Q ss_pred CCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC
Q 001190 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 973 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 973 (1128)
+|.|..||+.+++.+.++... ..+.+..+...+..++.++.|+.|+.||..+|+.+..+.... . ....-+.+..
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~--~---~~~~p~~~~~ 516 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS--G---GIGSPMTYSF 516 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS--C---CCSCCEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC--C---cEeeeEEEEE
Confidence 578999999999888776532 333333333345677779999999999999999876655431 1 1122345667
Q ss_pred CCCEEEEEe
Q 001190 974 DQVRMLVVH 982 (1128)
Q Consensus 974 d~~~l~~~~ 982 (1128)
+|+.++...
T Consensus 517 ~G~~yv~~~ 525 (571)
T 2ad6_A 517 KGKQYIGSM 525 (571)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEE
Confidence 888776654
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.64 E-value=1.6e-06 Score=87.77 Aligned_cols=186 Identities=10% Similarity=0.067 Sum_probs=128.5
Q ss_pred eeEEEeccCCCeEEEEe-CC--eEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeec
Q 001190 834 VPCIALSKNDSYVMSAT-GG--KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 910 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~ 910 (1128)
...+.|+ ++.++.+.+ +| .|+++|+++++.+.++.... ......+.+.++++.+....++.+.+||..+.+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4788998 666655555 55 79999999999998887533 3333323332455666666789999999999999988
Q ss_pred ccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEEE
Q 001190 911 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIY 989 (1128)
Q Consensus 911 l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v~ 989 (1128)
+.... .-.. +++|++.|+....++.|.++|..+.+.+..+.... .+.....++.+.|. +|+..+.. .++.|.+.
T Consensus 123 i~~~~-eG~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI 197 (262)
T 3nol_A 123 FNYDG-EGWG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEELPELNELEWV-DGEIFANVWQTNKIVRI 197 (262)
T ss_dssp EECSS-CCCC--EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EECCC-CceE--EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence 87532 2233 44577777766667889999999988777766542 11111334557776 67655444 47899999
Q ss_pred ecCCcccccccccCC---------CCCCCeEEEEEeeCCCEEEEEe
Q 001190 990 DASKMERIRQWTPQD---------ALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 990 d~~~~~~~~~~~~~~---------~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
|..+++.+..+.... .-..-.+.|+|+|+++.|++.+
T Consensus 198 Dp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 198 DPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 999999877665421 0123568999999988888776
No 260
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=3.4e-06 Score=85.51 Aligned_cols=195 Identities=9% Similarity=0.076 Sum_probs=130.5
Q ss_pred ccEEEEEEecCcceEEEeeccc--eeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC
Q 001190 765 SKVVRLLYTNSAVGLLALGSNG--VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 842 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~dg--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 842 (1128)
.-..++.|+ ++....+++.+| .|+.+|+ .+|+++.... .........+.++
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~----------------------~Tgkv~~~~~----l~~~~FgeGit~~ 95 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDI----------------------ESGKTLQQIE----LGKRYFGEGISDW 95 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECT----------------------TTCCEEEEEE----CCTTCCEEEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEEC----------------------CCCcEEEEEe----cCCccceeEEEEe
Confidence 345889998 676666666665 6776654 4444333221 1223333333345
Q ss_pred CCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-----
Q 001190 843 DSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ----- 915 (1128)
Q Consensus 843 g~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~----- 915 (1128)
++.|.... ++.+.+||..+++.+.++...... ..++ + |++.|+....+++|.++|..+.+.+..+....
T Consensus 96 g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~ 171 (262)
T 3nol_A 96 KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEEL 171 (262)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CCEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEEC
T ss_pred CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eEEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccc
Confidence 66665555 789999999999999998753322 2333 4 55656555567889999999988887765422
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecC------CCCCCCccEEEEcCCCCEEEEEecCeEEEE
Q 001190 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVRMLVVHETQLAIY 989 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~ 989 (1128)
..++.+.|. +|+..|..-.+..|.+.|..+|+.+..+...... .........++|+|+++.|++....--++|
T Consensus 172 ~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ 250 (262)
T 3nol_A 172 PELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVF 250 (262)
T ss_dssp CCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred cccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceE
Confidence 234567776 7777777777889999999999988877764221 111246689999999999888776655555
Q ss_pred ec
Q 001190 990 DA 991 (1128)
Q Consensus 990 d~ 991 (1128)
.+
T Consensus 251 ev 252 (262)
T 3nol_A 251 EI 252 (262)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.61 E-value=6.4e-06 Score=96.68 Aligned_cols=250 Identities=13% Similarity=0.087 Sum_probs=152.9
Q ss_pred EEeccCCCe----EEEEe-CCeEEEEECCCceEEEEeeCCCC----Cee-EEEEcCCCCCEEEEEe------CCCcEEEE
Q 001190 837 IALSKNDSY----VMSAT-GGKISLFNMMTFKVMTTFMSPPP----AST-FLAFHPQDNNIIAIGT------EDSTIHIY 900 (1128)
Q Consensus 837 ~~~s~dg~~----la~~~-dg~i~vwd~~~~~~~~~~~~~~~----~v~-~l~~s~~d~~~lasg~------~dg~v~iw 900 (1128)
++++|++.. |++++ ++.|..+|..+|+.+........ .+. ...+. ++. +++++ .+|.|+-+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEE
Confidence 455443333 66665 89999999999999877653321 222 22222 444 44444 38999999
Q ss_pred ecccceeeecccccccC-------------------------------------e-eEEEEcCCCCEEEEEcCC------
Q 001190 901 NVRVDEVKSKLKGHQKR-------------------------------------I-TGLAFSTSLNILVSSGAD------ 936 (1128)
Q Consensus 901 d~~~~~~~~~l~~h~~~-------------------------------------V-~~l~~s~d~~~l~s~~~D------ 936 (1128)
|..+|+.+-++...... + ..+++.++..+++.+..+
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999887655421110 0 134566677777766654
Q ss_pred ----------CcEEEEECCCCcccceeEEeecCCC---CCCCccEEEEc-CCC---CEEEEE-ecCeEEEEecCCccccc
Q 001190 937 ----------AQLCVWSIDTWEKRKSVTIHIPAGK---TPTGDTRVQFN-ADQ---VRMLVV-HETQLAIYDASKMERIR 998 (1128)
Q Consensus 937 ----------g~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~v~~s-~d~---~~l~~~-~d~~i~v~d~~~~~~~~ 998 (1128)
+.|..+|.++|+.+........+.. ......-+... .+| ..++.+ .+|.++++|..+|+.+.
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 3799999999987655433211110 00111112222 567 345545 48999999999998865
Q ss_pred ccccCC----------CCCCC--------------------------eEEEEEeeCCCEEEEEe----------------
Q 001190 999 QWTPQD----------ALSAP--------------------------ISCAVYSCNSQLVFATF---------------- 1026 (1128)
Q Consensus 999 ~~~~~~----------~h~~~--------------------------v~~l~~s~dg~~l~t~~---------------- 1026 (1128)
...... ....+ -..++|+|+.+++++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 543211 00111 13467777777665531
Q ss_pred -----------------------cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC
Q 001190 1027 -----------------------CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1083 (1128)
Q Consensus 1027 -----------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d 1083 (1128)
.+|.|.-||+.+|+.+.+..... .....++.. .+.+++.++.|
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~t-----agg~vf~gt~d 493 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---------AVWGGTMAT-----AGDLVFYGTLD 493 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS---------CCCSBCEEE-----TTTEEEEECTT
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC---------CccCcceEe-----cCCEEEEECCC
Confidence 34789999999999888775210 001111211 46788889999
Q ss_pred CcEEEEcCCCCCCCcccCCC
Q 001190 1084 GSVKVMEPSESEGKWGVSPP 1103 (1128)
Q Consensus 1084 g~i~iWd~~~~~~~w~~~~p 1103 (1128)
|.|+.||..+|+..|....|
T Consensus 494 g~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 494 GYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp SEEEEEETTTCCEEEEEECS
T ss_pred CeEEEEECCCCCEEEEeeCC
Confidence 99999999999999988544
No 262
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.59 E-value=3.7e-05 Score=90.53 Aligned_cols=148 Identities=13% Similarity=0.092 Sum_probs=97.6
Q ss_pred CcEEEEecccceeeecccc--cc--------cCeeEEEEc-CCCC---EEEEEcCCCcEEEEECCCCcccceeEEeec--
Q 001190 895 STIHIYNVRVDEVKSKLKG--HQ--------KRITGLAFS-TSLN---ILVSSGADAQLCVWSIDTWEKRKSVTIHIP-- 958 (1128)
Q Consensus 895 g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~d~~---~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~-- 958 (1128)
+.|.-+|..+|+.+-.++. |. .++. +... .+|+ .++.++.+|.++++|..+|+.+........
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 5899999999998876642 31 1221 1222 4674 788899999999999999987655443210
Q ss_pred ----------------CCCC---------C------------CCccEEEEcCCCCEEEEEe-------------------
Q 001190 959 ----------------AGKT---------P------------TGDTRVQFNADQVRMLVVH------------------- 982 (1128)
Q Consensus 959 ----------------~~~~---------~------------~~v~~v~~s~d~~~l~~~~------------------- 982 (1128)
.... . ..-..++++|+..++++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 0000 0 0012457777765555421
Q ss_pred ---------------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 983 ---------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 983 ---------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
.+.|..||+.+++.+-..... .++..-.+.-.|.++++++.||.++.||.++|+.+.++..
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC----CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 467999999999887655432 2222222334577888899999999999999999998884
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.57 E-value=3.1e-06 Score=85.62 Aligned_cols=184 Identities=10% Similarity=0.037 Sum_probs=128.2
Q ss_pred CeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeE--EEEcCCCCCEEEEEeCCCcEEEEecccceeee
Q 001190 833 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTF--LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 909 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~--l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~ 909 (1128)
....+.|+ ++.++.+.+ +|.|+++|+++++.+..+ - ...... +++. ++++.+....++.+.+||..+.+.+.
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 34678886 344444444 688999999999998887 2 233433 5554 45666677789999999999999998
Q ss_pred cccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCeEEE
Q 001190 910 KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAI 988 (1128)
Q Consensus 910 ~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~v 988 (1128)
++..- ..-.+++ +|++.|+.+..++.|.++|..+.+.+..+....... .-..+..+.|. +|+..+.. .++.|.+
T Consensus 131 ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~-~v~~lNeLe~~-dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 131 TTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ-PVELINELECA-NGVIYANIWHSSDVLE 205 (268)
T ss_dssp EEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE-ECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred EEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc-ccccccccEEe-CCEEEEEECCCCeEEE
Confidence 88753 3334444 567877777778899999999998877776653211 11345667777 77654444 3789999
Q ss_pred EecCCcccccccccC----------CCCCCCeEEEEEeeCCCEEEEEe
Q 001190 989 YDASKMERIRQWTPQ----------DALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 989 ~d~~~~~~~~~~~~~----------~~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
.|..+++.+..+... ..-..-.+.|+|+|+++.|++.+
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999887665432 11134678999999877666655
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.56 E-value=2.2e-05 Score=85.67 Aligned_cols=238 Identities=11% Similarity=0.069 Sum_probs=149.3
Q ss_pred CeeEEEeccCCCeEEEEe-CCeEEEEECCCceEEEEeeC-C-------------------CCCeeEEEEcCCCCCEEEEE
Q 001190 833 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS-P-------------------PPASTFLAFHPQDNNIIAIG 891 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-~-------------------~~~v~~l~~s~~d~~~lasg 891 (1128)
...+++++++|+++.++. ++.|..|+..+++.. .+.. . ...+..+++.+.+++++ ++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EE
Confidence 356788999998666665 788999998765443 2211 0 12478899986345544 45
Q ss_pred eCCCcEEEEecccceeeeccc----c-cccCeeEEEEcC-CCCEEEEEcC-----------------CCcEEEEECCCCc
Q 001190 892 TEDSTIHIYNVRVDEVKSKLK----G-HQKRITGLAFST-SLNILVSSGA-----------------DAQLCVWSIDTWE 948 (1128)
Q Consensus 892 ~~dg~v~iwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~l~s~~~-----------------Dg~i~iwd~~~~~ 948 (1128)
...+.|..+|..+++.. .+. + .......+++.+ +|+++++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 44556888887766422 221 1 113467899999 9987776532 3678888887765
Q ss_pred ccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCccc--ccccccCCCCCCCeEEEEEeeCCCEEEE
Q 001190 949 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFA 1024 (1128)
Q Consensus 949 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~t 1024 (1128)
...... .. .....++++++|+.|.+++ .+.|.+|++..... ...+... .. ...+++.++|++.++
T Consensus 177 ~~~~~~-~~------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 177 TTLLLK-EL------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EEEEEE-EE------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEE
T ss_pred EEEecc-CC------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEE
Confidence 322211 11 3456799999999777764 57899999875321 1111111 23 788999999996666
Q ss_pred Eec----------CCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCC
Q 001190 1025 TFC----------DGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1094 (1128)
Q Consensus 1025 ~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~ 1094 (1128)
... .+.|.++|. .|+.+..+....... ...+..+++. ++.++++....+.|..+++...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~--------~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFA--------GEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTT--------TSCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCc--------cccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence 544 467888987 477777665322110 1223455553 4677777778889999987644
Q ss_pred C
Q 001190 1095 E 1095 (1128)
Q Consensus 1095 ~ 1095 (1128)
.
T Consensus 315 ~ 315 (322)
T 2fp8_A 315 G 315 (322)
T ss_dssp -
T ss_pred c
Confidence 3
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.55 E-value=4.9e-05 Score=89.48 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcC
Q 001190 894 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 973 (1128)
Q Consensus 894 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 973 (1128)
+|.|.-||+.+++.+-+...+ .++..-.+...+.+++.++.|+.++.||.++|+.+..+.... + ....-+.|..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~--g---~~a~P~~y~~ 538 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS--G---IVSPPITWEQ 538 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS--C---CCSCCEEEEE
T ss_pred cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC--C---cccCceEEEE
Confidence 688999999999887666533 222222222246678889999999999999999877665431 1 1222366778
Q ss_pred CCCEEEEE
Q 001190 974 DQVRMLVV 981 (1128)
Q Consensus 974 d~~~l~~~ 981 (1128)
+|+..++.
T Consensus 539 ~G~qYv~~ 546 (582)
T 1flg_A 539 DGEQYLGV 546 (582)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 88765553
No 266
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.53 E-value=0.0062 Score=74.94 Aligned_cols=527 Identities=11% Similarity=0.062 Sum_probs=271.4
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
...|.++....+|. + -.|+.+| +..||..+++.... .......|.++.. .+| .|-.
T Consensus 62 ~~~i~~i~~d~~g~-l-WigT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-L-YMGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE-E-EEEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc-E-EEEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 35699999888886 3 3455554 78899876542210 0111235777765 355 4555
Q ss_pred EeCCCeEEEEEccCCCcceeceee-c-ccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCCeEEEecCC------C
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHSQI-D-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH------E 494 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~~-~-~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~~~~~~~~h------~ 494 (1128)
|+.+ .+..+|..+++... +... . -....|.++....+|. +. .|+. +-+..+| .+++ ...+... .
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lW-igt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~ 190 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IY-VGTY-NGLCRYIPSNGK-FEGIPLPVHSSQSN 190 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EE-EEET-TEEEEEETTTTE-EEEECCCCCTTCSS
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EE-EEeC-CCHhhCccCCCc-eEEecCCCcccccc
Confidence 6665 58888987754321 1000 0 1134688888887887 33 3443 3577888 4443 3222211 1
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
..|.++... .++..|..|+. +-+..++..+.............|.++....+|.+.+.. ++-+.+++..++
T Consensus 191 ~~i~~i~~d--~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT------~~Gl~~~~~~~~ 261 (758)
T 3ott_A 191 LFVNSLLED--TTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT------DNGLYVYHNDTT 261 (758)
T ss_dssp CCEEEEEEE--TTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE------TTEEEEECCTTS
T ss_pred ceeEEEEEE--CCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe------CCceeEEecCCC
Confidence 247777653 24455566664 457778766543322212223468888888888766543 234788887766
Q ss_pred ceeeEec------cccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe-----cCCCCCCcceEEEcCCCCE
Q 001190 575 TIKRTYA------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-----AEGGLPNLPRLRFSKEGNL 643 (1128)
Q Consensus 575 ~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~v~~sp~~~~ 643 (1128)
+...... ......|.++....+|. |-.|+..| +.++... .. ..... .......|.++....+|.+
T Consensus 262 ~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~l 337 (758)
T 3ott_A 262 PLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFY 337 (758)
T ss_dssp CCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCE
T ss_pred cEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCE
Confidence 5432211 11223577777776665 44555556 5544332 21 11111 0111235677777777765
Q ss_pred EEEEEcCCcEEEEEcccCcc-ccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCCC
Q 001190 644 LAVTTADNGFKILANAIGLR-SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPTS 722 (1128)
Q Consensus 644 l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1128)
.+ |+.+| +..++..++.. .... +.....
T Consensus 338 Wi-Gt~~G-l~~~~~~~~~~~~~~~-----------------~~~~~~-------------------------------- 366 (758)
T 3ott_A 338 WF-GGANG-LIRFTDPAGERHDAIW-----------------YRMGDK-------------------------------- 366 (758)
T ss_dssp EE-EETTE-EEEESCTTSSCCCCEE-----------------ECTTCS--------------------------------
T ss_pred EE-eeCCc-ceeecccccccceeEE-----------------eccCCc--------------------------------
Confidence 54 44444 44444332100 0000 000000
Q ss_pred CCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCC
Q 001190 723 RSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG 802 (1128)
Q Consensus 723 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~ 802 (1128)
.. ......|.++....+|...+. +. +-+..|+......
T Consensus 367 --------------------------~~----------~l~~~~v~~i~~d~~g~lWig-t~-~GL~~~~~~~~~~---- 404 (758)
T 3ott_A 367 --------------------------TY----------PLSHNRIRHIYEDKEQQLWIA-TD-GSINRYDYATRQF---- 404 (758)
T ss_dssp --------------------------SS----------CCSCSCEEEEEECTTSCEEEE-ET-TEEEEEETTTTEE----
T ss_pred --------------------------CC----------CCCCCceEEEEECCCCCEEEE-eC-CcHhhcCcCCCcE----
Confidence 00 002245677777777774443 33 4566665432110
Q ss_pred ceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCCeEEEEeCCeEEEEECCCc-----eEE---EEee---C-
Q 001190 803 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-----KVM---TTFM---S- 870 (1128)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~-----~~~---~~~~---~- 870 (1128)
+.+...... .......|.++...++|++.+...++.|.++|..+. ... ..+. +
T Consensus 405 --------~~~~~~~~~-------~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 469 (758)
T 3ott_A 405 --------IHYNIVDNT-------GTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL 469 (758)
T ss_dssp --------EEEEEECCC---------CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC
T ss_pred --------EEeecCCCc-------CCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc
Confidence 001000000 000234588888888887666554667888886531 111 1211 1
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc-c--cccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCC
Q 001190 871 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-G--HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 947 (1128)
Q Consensus 871 ~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~--h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~ 947 (1128)
....|.++...+ ++.+.+.++..+-|..+|..+++...... . ....+.++....+|.+.+.. .+| +..++..++
T Consensus 470 ~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~ 546 (758)
T 3ott_A 470 SGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDE 546 (758)
T ss_dssp SCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--C
T ss_pred ccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCC
Confidence 223588999888 77776644445568889988776443211 1 13467888888888877644 445 888887765
Q ss_pred cccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccccccCCCCCCCeEEEEEe-eCCCEEEEEe
Q 001190 948 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS-CNSQLVFATF 1026 (1128)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~t~~ 1026 (1128)
+.... . ..+-....+.++... +|. |-.+....+..++..+.+... +... ...+....+. +||+ |+.|+
T Consensus 547 ~~~~~-~---~~gl~~~~i~~i~~~-~g~-lWi~t~~Gl~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~G~-l~fG~ 615 (758)
T 3ott_A 547 SQQSI-S---FGSFSNNEILSMTCV-KNS-IWVSTTNGLWIIDRKTMDARQ-QNMT---NKRFTSLLFDPKEDC-VYLGG 615 (758)
T ss_dssp CCCBC-C---CCC---CCEEEEEEE-TTE-EEEEESSCEEEEETTTCCEEE-C--C---CCCCSEEEEETTTTE-EEEEC
T ss_pred ceEEe-c---ccCCCccceEEEEEC-CCC-EEEECCCCeEEEcCCCceeEE-ecCC---CCceeeeEEECCCCc-EEEec
Confidence 43211 1 111112456777664 554 444556678899987665422 2111 2233344444 4565 56677
Q ss_pred cCCcEEEEecC
Q 001190 1027 CDGNIGVFDAD 1037 (1128)
Q Consensus 1027 ~dg~i~vwd~~ 1037 (1128)
.+| +..++.+
T Consensus 616 ~~G-l~~f~p~ 625 (758)
T 3ott_A 616 ADG-FGISHSN 625 (758)
T ss_dssp BSE-EEEEEC-
T ss_pred CCc-eEEEChh
Confidence 777 4555554
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.52 E-value=9.8e-06 Score=99.36 Aligned_cols=245 Identities=10% Similarity=0.060 Sum_probs=132.9
Q ss_pred cEEEEEEe-CCCCcEEEEeeccC----eEEEEEccCC-ceecccccccccccccCccccceeccCCCcceEEEEEccCCC
Q 001190 346 TVISMDFH-PSHQTLLLVGSSNG----EITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1128)
Q Consensus 346 ~V~~v~fs-pdg~~lla~gs~d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 419 (1128)
.+...+|| |||++++.+-+.+| +|.++|+.+| +.+.. .+. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KVS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CEE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------ccc---CceeeEEEecCCC
Confidence 68899999 99996554443333 5999999988 63211 011 1245689999999
Q ss_pred EEEEEeCC-----CeEEEEEccCCCcceeceeec-ccccceeEEEEecCCCeEEEEEec-CCCeEEEEe-cCC--Ce-EE
Q 001190 420 YVGVAFTK-----HLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSG--RK-LF 488 (1128)
Q Consensus 420 ~las~~~d-----~~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~fs~d~~~~~l~s~s-~d~~i~vWd-~~g--~~-~~ 488 (1128)
.|+....+ ..|.++++.++...... .+. .+......+.|+|||+.+++.+.. ....|.++| .++ .. +.
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99887765 25888888776432111 122 223446688999999964333332 234688888 443 23 13
Q ss_pred Ee-cCCCCCeEEEeccCCCCccEEEEEecc--C--cEEEEecCCCCceee-ecCCCC--eEEEEEEcCCCCeEEEeeecc
Q 001190 489 NF-EGHEAPVYSICPHHKENIQFIFSTAID--G--KIKAWLYDTMGSRVD-YDAPGH--WCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 489 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~~wd~~~~~~~~~-~~~~~~--~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.+ .+..+...++.|+. ++.+++....+ + .|..+++........ +..+.. .+..+.+ +++.|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 33 33445556655432 33344444443 3 455556554222222 223333 4445554 4566665543 2
Q ss_pred CCCceEEEEeC-------CCCceeeEeccccCCceeEEEE------eCCCCEE-EEEEC---CCcEEEEECCCCee
Q 001190 561 DGDSFLVEWNE-------SEGTIKRTYAGFRKKSNGVVQF------DTTQNHF-LAVGE---DSQIKFWDMDNVNI 619 (1128)
Q Consensus 561 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l-~~~s~---dg~i~iwd~~~~~~ 619 (1128)
++...|.++++ .+++....+..... ...+.+ ++++..+ ++.+. -+.++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~--~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEP--IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCS--SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCc--eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34456777775 34441333332211 222344 3455443 44332 25678888877764
No 268
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.51 E-value=9.8e-06 Score=82.03 Aligned_cols=194 Identities=8% Similarity=-0.040 Sum_probs=130.1
Q ss_pred ccEEEEEEecCcceEEEeeccceeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccCCC
Q 001190 765 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 844 (1128)
Q Consensus 765 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 844 (1128)
....++.|+ ++...++.+.+|.|+.+|+ .+++.+...+. ....-..+++ +++
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~----------------------~Tgkv~~~~l~---~~~FgeGit~--~g~ 106 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSL----------------------ESAQPVWMERL---GNIFAEGLAS--DGE 106 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCS----------------------SCSSCSEEEEC---TTCCEEEEEE--CSS
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEEC----------------------CCCcEEeEECC---CCcceeEEEE--eCC
Confidence 445788887 4566667777788887754 44444433211 1111223444 455
Q ss_pred eEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc-----cC
Q 001190 845 YVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-----KR 917 (1128)
Q Consensus 845 ~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~ 917 (1128)
.|.... ++.+.+||..+++.+.++..... -..++ + |++.|+.+..+++|.++|..+.+.+.++.... ..
T Consensus 107 ~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~ 182 (268)
T 3nok_A 107 RLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVEL 182 (268)
T ss_dssp CEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--E-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred EEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccc
Confidence 555554 89999999999999999885332 23444 4 56666666678999999999998887765422 23
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeec-------CCCCCCCccEEEEcCCCCEEEEEecCeEEEEe
Q 001190 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP-------AGKTPTGDTRVQFNADQVRMLVVHETQLAIYD 990 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d 990 (1128)
++.+.|. +|+.+|....+..|.+-|..+|+.+..+.+... ..........||++|+++.|++....--++|.
T Consensus 183 lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~e 261 (268)
T 3nok_A 183 INELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFE 261 (268)
T ss_dssp EEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEE
T ss_pred ccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEE
Confidence 4667777 777777776788999999999998888876521 11222567899999998887776655444444
Q ss_pred c
Q 001190 991 A 991 (1128)
Q Consensus 991 ~ 991 (1128)
+
T Consensus 262 v 262 (268)
T 3nok_A 262 V 262 (268)
T ss_dssp E
T ss_pred E
Confidence 3
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.50 E-value=1.1e-05 Score=97.71 Aligned_cols=276 Identities=9% Similarity=0.040 Sum_probs=153.7
Q ss_pred EEEEeC-CCCcEEEEeeccC-----------eEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEcc
Q 001190 349 SMDFHP-SHQTLLLVGSSNG-----------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1128)
Q Consensus 349 ~v~fsp-dg~~lla~gs~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 416 (1128)
++++.| +|+ +++.|+.+. .+.+||..+++.... ..+...+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~----------------~~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR----------------TVTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC----------------EEEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeC----------------cccCCCCCCccccccCCC
Confidence 667788 787 777776532 588899888764321 011122334445678889
Q ss_pred CCCEEEEEeC-CCeEEEEEccCCCcceeceeecccccc-eeEEEEecCCCeEEEEEec-CC-----CeEEEEe-cCCCeE
Q 001190 417 DGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGA-VNDLAFAYPNKLLCVVTCG-DD-----KLIKVWE-LSGRKL 487 (1128)
Q Consensus 417 dg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~-v~~l~fs~d~~~~~l~s~s-~d-----~~i~vWd-~~g~~~ 487 (1128)
+|+.++.|+. +..+.+||..+++-... ..+ +..+ -.+++..++|+ +++.|+ .+ ..+.+|| .++.-.
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEEC-CCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeEC-CCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 9999999984 45799999988653321 112 2222 23456667888 677777 44 5789999 555432
Q ss_pred EEecCCC-CCe----EEEeccCCCCccEEEEEeccC---------cEEEEecCCCCceeeecCC---------CCeEEEE
Q 001190 488 FNFEGHE-APV----YSICPHHKENIQFIFSTAIDG---------KIKAWLYDTMGSRVDYDAP---------GHWCTTM 544 (1128)
Q Consensus 488 ~~~~~h~-~~v----~~~~~~~~~~~~~l~s~~~dg---------~i~~wd~~~~~~~~~~~~~---------~~~i~~~ 544 (1128)
.+.... .+. ....+ ..++..++.++.+| .+..||..+..-....... ...-.++
T Consensus 328 -~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 328 -SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp -EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred -eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 221000 000 00111 12344555565554 4567777665432211111 1112344
Q ss_pred EEcC-CCCeEEEeeeccCC----Cc---eEEEEeCCCCceeeEe--ccccCCceeEEEEeCCCCEEEEEECC--------
Q 001190 545 LYSA-DGSRLFSCGTSKDG----DS---FLVEWNESEGTIKRTY--AGFRKKSNGVVQFDTTQNHFLAVGED-------- 606 (1128)
Q Consensus 545 ~~s~-~g~~l~~~~~~~~~----~~---~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~d-------- 606 (1128)
.|.. +++.+++++..... .. .+.+||..+.+-.... ...........+..++++.++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 4433 66677776632100 11 6788888776654433 22222223445667899999998854
Q ss_pred ---CcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEc
Q 001190 607 ---SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1128)
Q Consensus 607 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~ 649 (1128)
..+.+||..+.+....-..........+..+.|++++++.|+.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999988765432221111111234556789999999885
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.50 E-value=3.1e-05 Score=84.48 Aligned_cols=259 Identities=9% Similarity=0.031 Sum_probs=142.1
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceeccc-ccccccccccCccccceeccCCCcceEEEEEcc-CCCEEEE
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSK-PFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGV 423 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 423 (1128)
...+++++++|+ ++.++..++.|..|+..+++...-. .-..+....+.-.... ........+..+++.+ +|+ |..
T Consensus 20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA-EKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp CCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCG-GGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEEecccccccccccccccch-hccccCCCCceEEEcCCCCc-EEE
Confidence 467788999998 5677778899999988765432100 0000000000000000 0000123578999998 554 555
Q ss_pred EeCCCeEEEEEccCCCcceece-eecc-cccceeEEEEec-CCCeEEEEEecC-----------------CCeEEEEe-c
Q 001190 424 AFTKHLIQLYSYAGSNDLRQHS-QIDA-HVGAVNDLAFAY-PNKLLCVVTCGD-----------------DKLIKVWE-L 482 (1128)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~-~~~~-h~~~v~~l~fs~-d~~~~~l~s~s~-----------------d~~i~vWd-~ 482 (1128)
+...+.|..+|..++.. +.+. ...+ .......+++.+ +|. +.++-.. ++.|..|| .
T Consensus 97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 55555688888776532 2111 1111 123478899999 887 4444322 36788889 4
Q ss_pred CCCeEEEecCCCCCeEEEeccCCCCccEEEEE-eccCcEEEEecCCCC--ceeeecCCCCeEEEEEEcCCCCeEEEeeec
Q 001190 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 483 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~--~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
+++.. .+.........+++++ ++++|+.+ ...+.|..|+++... ....+..... ...++++++|++.++....
T Consensus 174 ~~~~~-~~~~~~~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 174 TKETT-LLLKELHVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp TTEEE-EEEEEESCCCEEEECT--TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEE
T ss_pred CCEEE-EeccCCccCcceEECC--CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCc
Confidence 45432 2221122345678865 66655555 566899999987521 1111111223 7889999999866665320
Q ss_pred c------CCCceEEEEeCCCCceeeEeccccC---CceeEEEEeCCCCEEEEEECCCcEEEEECCC
Q 001190 560 K------DGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1128)
Q Consensus 560 ~------~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 616 (1128)
. ...+.|..+|. .++.+..+....+ ..+..+++. ++..+++...++.|.++++..
T Consensus 250 ~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC--
T ss_pred ccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccc
Confidence 0 01356888886 4777766654432 235555553 444444444677888888753
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.48 E-value=1.4e-05 Score=80.44 Aligned_cols=188 Identities=11% Similarity=0.110 Sum_probs=128.3
Q ss_pred CCCeeEEEeccCCCeEEEEe-C--CeEEEEECCCceEEEEeeCCCCCe-eEEEEcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 831 EEAVPCIALSKNDSYVMSAT-G--GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~-d--g~i~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
..-...+.|+. +.++.+.+ . +.|+++|+.+++.+..+.-..... -.+++. ++++.+....++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34466889976 45555544 3 479999999999998886433221 234443 45666677789999999999999
Q ss_pred eeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEE-ecCe
Q 001190 907 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQ 985 (1128)
Q Consensus 907 ~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~ 985 (1128)
.+.++... ..-.+++ +|++.|+.+..++.|.++|..+.+.+..+.+... +..-..+..+.+. +|+..+.. ....
T Consensus 97 ~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~-g~~~~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 97 PRARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG-GRPLDNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEEEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC-CcccccceeeEEe-CCEEEEEECCCCe
Confidence 99888743 3334554 5666666666688999999999887777666531 1111344556655 66655444 4789
Q ss_pred EEEEecCCcccccccccCC----------CCCCCeEEEEEeeCCCEEEEEe
Q 001190 986 LAIYDASKMERIRQWTPQD----------ALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 986 i~v~d~~~~~~~~~~~~~~----------~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
|.+.|..+++.+..+.... .-..-.+.|+++|+++.|++.+
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 9999999999877655321 1134568999999888777766
No 272
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.46 E-value=2.8e-05 Score=78.21 Aligned_cols=198 Identities=11% Similarity=0.123 Sum_probs=130.5
Q ss_pred CcccEEEEEEecCcceEEEeeccc--eeEeeeccccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEec
Q 001190 763 TSSKVVRLLYTNSAVGLLALGSNG--VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 840 (1128)
Q Consensus 763 ~~~~i~~l~~s~~g~~l~~~~~dg--~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 840 (1128)
......++.|++ +....+.+..| .|+.+|+ .+|+++.... .........+.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~----------------------~tgkv~~~~~----l~~~~fgeGi~ 71 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDL----------------------ETGRILQRAE----VPPPYFGAGIV 71 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEET----------------------TTCCEEEEEE----CCTTCCEEEEE
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEEC----------------------CCCCEEEEEe----CCCCcceeEEE
Confidence 345577999987 55555555543 6777654 4444333211 12222223333
Q ss_pred cCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccc---
Q 001190 841 KNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ--- 915 (1128)
Q Consensus 841 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~--- 915 (1128)
.+++.|.... ++.+.+||..+++.+.++...... ..++ + +++.|..+..++.|.++|..+.+.+.++.-..
T Consensus 72 ~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~ 147 (243)
T 3mbr_X 72 AWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR 147 (243)
T ss_dssp EETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred EeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc
Confidence 3455565554 899999999999999999854332 3444 4 45555555668899999999988887765432
Q ss_pred --cCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCC-------CCCCCccEEEEcCCCCEEEEEecCeE
Q 001190 916 --KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG-------KTPTGDTRVQFNADQVRMLVVHETQL 986 (1128)
Q Consensus 916 --~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~v~~v~~s~d~~~l~~~~d~~i 986 (1128)
..++.+.+. +|+.++....+..|.+.|..+|+.+..+.+..... ........|+++|++..|++....--
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp 226 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP 226 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 245566766 67777766677899999999999888887663321 12246789999999988888776555
Q ss_pred EEEecC
Q 001190 987 AIYDAS 992 (1128)
Q Consensus 987 ~v~d~~ 992 (1128)
++|.++
T Consensus 227 ~~~~v~ 232 (243)
T 3mbr_X 227 MLYEIR 232 (243)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 555543
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.45 E-value=0.00013 Score=80.11 Aligned_cols=240 Identities=10% Similarity=0.040 Sum_probs=153.3
Q ss_pred CCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc
Q 001190 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 911 (1128)
+..+|.+..+ ..+|+.+..+.|+..++........+. ....+..++|++.++.++.+-...+.|+.+++..+.....+
T Consensus 34 d~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 34 DRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp TSSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 3445666666 446666666778888887665544443 34458899999856666667667889999998866533333
Q ss_pred cccccCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--c-CeEE
Q 001190 912 KGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-TQLA 987 (1128)
Q Consensus 912 ~~h~~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d-~~i~ 987 (1128)
........++++.+.+. ++++-...+.|.+.+++..... .+ . .. .......++++|.+..|..++ . +.|.
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-~---~~-~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VL-L---WQ-SLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-E---CT-TCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-EE-E---eC-CCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 32334567899987554 5555566788999998764321 11 1 11 114568999999777777665 3 6788
Q ss_pred EEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEE
Q 001190 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1066 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1128)
.+++.... ...+.... ......+++++++..|+.+. ..+.|..+|+........+. .....+.+
T Consensus 186 r~~~dG~~-~~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~------------~~~~~P~g 250 (349)
T 3v64_C 186 ASSMDGSG-RRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS------------QGLPHPFA 250 (349)
T ss_dssp EEETTSCS-CEESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------SSCSSEEE
T ss_pred EEeCCCCC-cEEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe------------CCCCCceE
Confidence 88876432 22222111 45678999999877777655 46679999987543333232 11234567
Q ss_pred EEEecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1067 VAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1067 ~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
+++. .+.++++-...+.|...+..+++.
T Consensus 251 iav~--~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 251 ITVF--EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEE--CCEEEEecCCCCeEEEEEccCCCc
Confidence 7773 356777777788888888666653
No 274
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.44 E-value=6.1e-05 Score=81.31 Aligned_cols=227 Identities=16% Similarity=0.093 Sum_probs=137.1
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEec-CCC-eEEEEe-cC
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK-LIKVWE-LS 483 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s-~d~-~i~vWd-~~ 483 (1128)
.....++|+|+|+++++-..++.|..||.+++ ... . + ........+++.++|+ ++++.. .++ .|..+| .+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~-~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI-H--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE-E--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE-E--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 45678999999997777667899999998763 222 1 1 2234688999999998 444443 333 577777 66
Q ss_pred CCeEEEecC-CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee-e-------c--CCCCeEEEEEEcCCCCe
Q 001190 484 GRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-Y-------D--APGHWCTTMLYSADGSR 552 (1128)
Q Consensus 484 g~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~-------~--~~~~~i~~~~~s~~g~~ 552 (1128)
|+....... .......++... ++..+++...++.|.++|......... . . ........+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 765432221 122234444422 334444444578888887654322111 0 0 111234555 788887
Q ss_pred EEEeeeccCCCceEEEEeCCC-Cce--eeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCC
Q 001190 553 LFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1128)
Q Consensus 553 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1128)
|+.+.. ..+.|..+++.. ++. ...+... .....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 777654 477899999874 332 1122111 134558899999877776678899999975 5543321111222
Q ss_pred CCcceEEEc---CCCCEEEEEEcC
Q 001190 630 PNLPRLRFS---KEGNLLAVTTAD 650 (1128)
Q Consensus 630 ~~v~~v~~s---p~~~~l~~~~~d 650 (1128)
....+++|. |++..|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 357899998 888888777654
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.39 E-value=0.00011 Score=81.96 Aligned_cols=238 Identities=10% Similarity=0.036 Sum_probs=152.0
Q ss_pred eeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccc
Q 001190 834 VPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 913 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 913 (1128)
..|.+..+ ..+|+.+..+.|+.+++.......... .......++|++.++.++++-...+.|+.+++..+.....+..
T Consensus 79 ~~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp SCEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred CeECCccc-cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 34555555 456666666779999987765544443 3456889999975666777767788999999886654333332
Q ss_pred cccCeeEEEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--c-CeEEEE
Q 001190 914 HQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-TQLAIY 989 (1128)
Q Consensus 914 h~~~V~~l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d-~~i~v~ 989 (1128)
.......+++.+.+. ++++-...+.|.+.+++...... + .. . .......++++|.+..|..++ . +.|..+
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~-l-~~---~-~l~~P~giavdp~~g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV-L-LW---Q-SLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE-E-EC---S-SCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE-e-ec---C-CCCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence 334456889987554 44555667788888887543211 1 11 1 114578999999887777765 3 668888
Q ss_pred ecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEE
Q 001190 990 DASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVA 1068 (1128)
Q Consensus 990 d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1128)
++............ ......|+|+++++.|+.+. ..+.|..+|+........+. .....+.+++
T Consensus 231 ~~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~------------~~~~~P~gia 295 (386)
T 3v65_B 231 SMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS------------QGLPHPFAIT 295 (386)
T ss_dssp ETTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC------------SSCSSEEEEE
T ss_pred eCCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE------------CCCCCceEEE
Confidence 77543222221111 44578999998877777655 56679999987543333322 1123456777
Q ss_pred EecCCCCEEEEEECCCcEEEEcCCCCCC
Q 001190 1069 AHPLEPNQFAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1069 ~~p~~~~~l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
+. .+.++++-...+.|..++..+++.
T Consensus 296 v~--~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 296 VF--EDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EE--CCEEEEeeCCCCeEEEEECCCCcc
Confidence 73 357778877888898888666654
No 276
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.39 E-value=0.00016 Score=77.93 Aligned_cols=237 Identities=9% Similarity=0.035 Sum_probs=140.2
Q ss_pred CCcceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEE
Q 001190 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1128)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 412 (1128)
.+.+....+........++|+|+|+ ++++-..++.|..||...+ ... . . .....+..+
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~-----~--------------~-~~~~~p~gi 77 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQI-----H--------------A-TVEGKVSGL 77 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEE-----E--------------E-ECSSEEEEE
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEE-----E--------------E-eCCCCceeE
Confidence 4455666666557789999999998 6677667889999987643 221 0 1 112468899
Q ss_pred EEccCCCEEEEEeCCC--eEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-cCCC-eEE
Q 001190 413 AWSPDGNYVGVAFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLF 488 (1128)
Q Consensus 413 ~~spdg~~las~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~~g~-~~~ 488 (1128)
+++|+|+++++..... .|..+|..+++... +..+. .......++..+++. .+++-..++.|.++| ..++ .+.
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~-~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVET-LLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEE-EEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEEE-EEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence 9999999766654432 46667777766422 21221 122234555555554 556666688999999 4432 121
Q ss_pred Eec---------CCCCCeEEEeccCCCCccEE-EEEeccCcEEEEecCCCCc---eeeecCCCCeEEEEEEcCCCCeEEE
Q 001190 489 NFE---------GHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRLFS 555 (1128)
Q Consensus 489 ~~~---------~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~i~~~~~s~~g~~l~~ 555 (1128)
... +.-...+.+ ++ +++.| ++-...+.|..++++.... ...+. .......++++++|++.++
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va 228 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGA 228 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEE
T ss_pred EECCccccccccCCCCcCCCc--Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEE
Confidence 110 111123444 33 44444 4555678999999875211 11111 1123556889999986665
Q ss_pred eeeccCCCceEEEEeCCCCceee--EeccccCCceeEEEEe---CCCCEEEEEECC
Q 001190 556 CGTSKDGDSFLVEWNESEGTIKR--TYAGFRKKSNGVVQFD---TTQNHFLAVGED 606 (1128)
Q Consensus 556 ~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~---~~~~~l~~~s~d 606 (1128)
.. +.+.|.++|.. ++... .+.... ....+++|. ++++.|++++..
T Consensus 229 ~~----~~~~V~~~~~~-G~~~~~~~~~~~~-~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 229 TH----IYNSVVRIAPD-RSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CB----TTCCEEEECTT-CCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEECT
T ss_pred eC----CCCeEEEECCC-CCEEEEeeccccc-CCceEEEEecccCCCCEEEEECCC
Confidence 44 36789999975 65532 232221 257789998 788888777654
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.38 E-value=0.00082 Score=73.64 Aligned_cols=248 Identities=13% Similarity=0.015 Sum_probs=151.0
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEE
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 423 (1128)
.+..+|.+..+++. ++++ ....|+..++....... +.. ....+..++|++.+..|..
T Consensus 33 ~d~~~C~~~~~~~~-ll~~--~~~~I~~i~~~g~~~~~-------------------~~~-~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEPV-LLFA--NRIDIRQVLPHRSEYTL-------------------LLN-NLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCCE-EEEE--CBSCEEEECTTSCCEEE-------------------EEC-SCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCce-eEee--cccceEEEeCCCCeeEE-------------------eec-CCCceEEEEEeccccEEEE
Confidence 34556777777543 4443 44567777776543221 122 2345789999987666665
Q ss_pred Ee-CCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec-CCCCCeEEEe
Q 001190 424 AF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (1128)
Q Consensus 424 ~~-~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~-~h~~~v~~~~ 501 (1128)
.. ..+.|..++++++.... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 54 57889999988765322 12222345678999986664 4556666789999996666544433 3334578888
Q ss_pred ccCCCCccEEEEEecc-CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEe
Q 001190 502 PHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1128)
Q Consensus 502 ~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 580 (1128)
+.+. ++.++++-... +.|...+++.................+++++++..|+.+-. +.+.|..+|+........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8764 34455554445 77888887654443333334456889999998888777643 4678999998754333333
Q ss_pred ccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe
Q 001190 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
.... .....+++. .+..+++-...+.|..++..+++....+.
T Consensus 242 ~~~~-~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQGL-PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSSC-SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCC-CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 234556663 33333344466778888866666655554
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.34 E-value=0.0021 Score=69.75 Aligned_cols=281 Identities=9% Similarity=0.010 Sum_probs=149.4
Q ss_pred cCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEE
Q 001190 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1128)
Q Consensus 342 ~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 421 (1128)
.....+.+|.|.+++. .+++| ..|.| +...+.|+.-.. .. .........+.+|+|+| +..+
T Consensus 33 ~~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~--------~~-------~~~~~~~~~~~~i~~~~-~~~~ 93 (327)
T 2xbg_A 33 PTTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEP--------RT-------LVLDHSDYRFNSVSFQG-NEGW 93 (327)
T ss_dssp SCSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEE--------CC-------CCCSCCCCEEEEEEEET-TEEE
T ss_pred CCCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeE--------CC-------CCCCCCCccEEEEEecC-CeEE
Confidence 4455799999998877 56655 56654 333333432110 00 00112345789999986 4444
Q ss_pred EEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeE-EEecCCCCCeEEE
Q 001190 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYSI 500 (1128)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~-~~~~~h~~~v~~~ 500 (1128)
+ ++.++.|.. ..+.|+.-........+.+.+..+.+.+++. .++.+. ++.|..-...|+.- ....++...+..+
T Consensus 94 ~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~S~DgG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 94 I-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYRTKDSGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp E-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEEESSTTSSEEEEECSCCCCEEEE
T ss_pred E-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEEEcCCCCCCEEeecCCCcceEEE
Confidence 4 455664433 4444554433211112345678888888776 555554 55443222234332 2223455678888
Q ss_pred eccCCCCccEEEEEeccCcEEEEecCCCCceee-ecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 501 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
++.+ ++.+++.+...+..+-+|-. +..-.. -......+..+.+++++..++.+. ++.+++.+...++.-..
T Consensus 169 ~~~~--~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~ 240 (327)
T 2xbg_A 169 NRSP--SGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGE 240 (327)
T ss_dssp EECT--TSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECC
T ss_pred EEcC--CCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEe
Confidence 8865 45666655443333333320 111111 122345788899999988766552 56677664332332222
Q ss_pred eccc---cCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecC-CCCCCcceEEEcCCCCEEEEEEcCCcEEE
Q 001190 580 YAGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1128)
Q Consensus 580 ~~~~---~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~~~~~dg~i~i 655 (1128)
+... ....+..+.+.+++..++ ++.+|.| .+..+.++.-..+... .....+.++.|.+++ .+++++.+|.|.-
T Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~-~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 241 LLSPLRRNSVGFLDLAYRTPNEVWL-AGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLR 317 (327)
T ss_dssp CBCTTSSCCSCEEEEEESSSSCEEE-EESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEE
T ss_pred ccCCcccCCcceEEEEecCCCEEEE-EeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEE
Confidence 2211 112467788887766555 4557776 4455556554444321 112357888887555 4566667887765
Q ss_pred EE
Q 001190 656 LA 657 (1128)
Q Consensus 656 w~ 657 (1128)
++
T Consensus 318 ~~ 319 (327)
T 2xbg_A 318 YV 319 (327)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.30 E-value=0.00066 Score=75.60 Aligned_cols=246 Identities=13% Similarity=0.018 Sum_probs=150.6
Q ss_pred cEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE-
Q 001190 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA- 424 (1128)
Q Consensus 346 ~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 424 (1128)
.-.|.+..+.+. ++++ ....|+..++..+.... +......+..++|.+.+..|...
T Consensus 78 ~~~C~~~~~~~~-l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEPV-LLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCCE-EEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccce-eEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 345666666443 4333 44678888876544321 11223458899999866666555
Q ss_pred eCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec-CCCCCeEEEecc
Q 001190 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPH 503 (1128)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~-~h~~~v~~~~~~ 503 (1128)
...+.|..++++++.... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 457889999988764222 12222335678999986664 4556666788999886665544433 333557888887
Q ss_pred CCCCccEEEEEecc-CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEecc
Q 001190 504 HKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1128)
Q Consensus 504 ~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 582 (1128)
+. ++.++++-... +.|...+++.................++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 64 33444444444 67888887665444444444556889999998887777643 467899999865443333332
Q ss_pred ccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEe
Q 001190 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
.. .....+++. .+..+++-...+.|..++..+++....+.
T Consensus 287 ~~-~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 287 GL-PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp SC-SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CC-CCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 22 234556663 33344444467788888877777666654
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.29 E-value=0.00043 Score=74.75 Aligned_cols=229 Identities=8% Similarity=0.016 Sum_probs=145.0
Q ss_pred eEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc----ceeeecccccccCeeE
Q 001190 845 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV----DEVKSKLKGHQKRITG 920 (1128)
Q Consensus 845 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~ 920 (1128)
+|+.+..+.|+..|+.+.+....+. .......++|++.++.++.+-..++.|+.+++.. ......+........+
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 5666667789999998876655443 3456789999984566666767789999999876 2222222222245678
Q ss_pred EEEcCCCC-EEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--c-CeEEEEecCCccc
Q 001190 921 LAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-TQLAIYDASKMER 996 (1128)
Q Consensus 921 l~~s~d~~-~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d-~~i~v~d~~~~~~ 996 (1128)
+++.+.+. +.++-...+.|.+.+++..... .+ .. . .......++++|++..|+.++ . +.|..+++. +..
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~-~~-~---~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~ 154 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TL-FR-E---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVD 154 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEE-EE-EE-C---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCC
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceE-EE-EE-C---CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCC
Confidence 99987544 5555567789999998764322 11 11 1 114578999999777666654 2 578888775 333
Q ss_pred ccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCC
Q 001190 997 IRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1075 (1128)
Q Consensus 997 ~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1075 (1128)
...+.... ......++++++++.|+.+. ..+.|.++|+............ .....+.++++. .+.
T Consensus 155 ~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~----------~~~~~P~giav~--~~~ 220 (316)
T 1ijq_A 155 IYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE----------KRLAHPFSLAVF--EDK 220 (316)
T ss_dssp EEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT----------TTTSSEEEEEEE--TTE
T ss_pred eEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecC----------CccCCcEEEEEE--CCE
Confidence 22222111 45678999999887777665 5568999998753332222210 112245677774 357
Q ss_pred EEEEEECCCcEEEEcCCCCC
Q 001190 1076 QFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1076 ~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
++++-...+.|..++..+++
T Consensus 221 ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEEeCCCCc
Confidence 77777788889999887665
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.00032 Score=79.33 Aligned_cols=250 Identities=11% Similarity=0.063 Sum_probs=146.1
Q ss_pred CeeEEEecc-CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeC-CC----cEEEEecccc
Q 001190 833 AVPCIALSK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE-DS----TIHIYNVRVD 905 (1128)
Q Consensus 833 ~v~~~~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~-dg----~v~iwd~~~~ 905 (1128)
....++++| ++..|.++. .+.|+.+|..+++..... ........++|++ +++.|.++.. ++ .+.+++ ..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 467889998 455666665 578999999877654433 3455688999999 7774444443 22 233344 333
Q ss_pred eee--ecccccccCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe
Q 001190 906 EVK--SKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH 982 (1128)
Q Consensus 906 ~~~--~~l~~h~~~V~~l~~s~-d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 982 (1128)
... ..+. ......+++++| +|.++++-..++.|..++..++..... ..... ......++|+|+|++|.+++
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~--~~~~~---~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL--FTIQD---SGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE--EECSS---SSCCEEEEECTTSSEEEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE--EEcCC---CCcceeEEEcCCCCEEEEEE
Confidence 222 2222 123456788999 777777776778999999987643211 11111 14567899999999777764
Q ss_pred --cCeEEEEecCC--ccc--ccccccC---C---------CCCCCeE-EEEEe--------eCCCEEEEEecCCcEEEEe
Q 001190 983 --ETQLAIYDASK--MER--IRQWTPQ---D---------ALSAPIS-CAVYS--------CNSQLVFATFCDGNIGVFD 1035 (1128)
Q Consensus 983 --d~~i~v~d~~~--~~~--~~~~~~~---~---------~h~~~v~-~l~~s--------~dg~~l~t~~~dg~i~vwd 1035 (1128)
.+.|..++... +.. +..+... . ..-.... .++.. ++|.+.++-...+.|+.++
T Consensus 289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 67888877653 211 1111110 0 0011223 45553 3355555555677899998
Q ss_pred cCCCceEEEeCCCC----CCCCc-ccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1036 ADTLRLRCYIAPST----YLSPS-VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1036 ~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
.+|+......... ..... ......-..+..|+++|+++.++++-...+.|+..+++
T Consensus 369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 5675544433210 00000 00001123688999999557777777778888888764
No 282
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.23 E-value=0.002 Score=69.85 Aligned_cols=195 Identities=12% Similarity=0.068 Sum_probs=114.3
Q ss_pred CCeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEE-eeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEE-Eec--cccee
Q 001190 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI-YNV--RVDEV 907 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~i-wd~--~~~~~ 907 (1128)
..+..+.+.++++.++++.+|.|.. ..+.|+.-.. .......+..+++.+ ++.+++++. +|.++. +|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 3467788878888777776665422 2222332222 224456789999999 788887665 444443 332 23333
Q ss_pred eecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEE
Q 001190 908 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLA 987 (1128)
Q Consensus 908 ~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~ 987 (1128)
+. ......+..+++.+++..++ ++.+|.+++++.+.++.-... ..........+..+++.+++..++++.++.+
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~--~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i- 272 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGEL--LSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL- 272 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCC--BCTTSSCCSCEEEEEESSSSCEEEEESTTCE-
T ss_pred CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEec--cCCcccCCcceEEEEecCCCEEEEEeCCCeE-
Confidence 32 23456788999999987665 455788877753333321111 1110001134778899999988888888777
Q ss_pred EEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEec
Q 001190 988 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 988 v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
.+....++.-..+.........+.++.|.++++ +++++.+|.|.-++-
T Consensus 273 ~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 273 LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 444554544333322111135678899986666 555667898777664
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.22 E-value=0.00088 Score=68.48 Aligned_cols=200 Identities=10% Similarity=0.063 Sum_probs=129.4
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEE
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 422 (1128)
-.+.+..++|+|++..|+++...++.|...|.. |+.+...+ +.+ ....-.|++.++|.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence 445799999999877677777778899999987 76654311 222 24677889999998777
Q ss_pred EEeCCCeEEEEEccCCCcceece--ee----cccccceeEEEEecCCCeEEEEEecCCC--eEEEEe--cCCCeEEEe--
Q 001190 423 VAFTKHLIQLYSYAGSNDLRQHS--QI----DAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE--LSGRKLFNF-- 490 (1128)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~--~~----~~h~~~v~~l~fs~d~~~~~l~s~s~d~--~i~vWd--~~g~~~~~~-- 490 (1128)
+.-.++.+.++++.....+.... .+ .........++|.|+++.+++ +.... .|..|+ ..+..+..+
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v--a~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF--FKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE--EEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE--EECcCCceEEEEcccccCCceeeecc
Confidence 76677889999887654322111 11 123456789999999985333 33333 455555 122222222
Q ss_pred -----cCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCC---------CeEEEEEEcCCCCeEEEe
Q 001190 491 -----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 491 -----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---------~~i~~~~~s~~g~~l~~~ 556 (1128)
..+...+.++++++. .+++++.....+.+..+|.+. .....+.... ...-.++|.++|+..+++
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred hhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 113345788899886 457777777888898998754 3444444332 256899999999866554
Q ss_pred eeccCCCceEEEEe
Q 001190 557 GTSKDGDSFLVEWN 570 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd 570 (1128)
+.+.++.+.
T Consensus 242 -----E~n~~y~f~ 250 (255)
T 3qqz_A 242 -----EPNRFYRFT 250 (255)
T ss_dssp -----TTTEEEEEE
T ss_pred -----CCceEEEEE
Confidence 245566554
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.21 E-value=7.6e-05 Score=91.44 Aligned_cols=194 Identities=11% Similarity=0.071 Sum_probs=109.2
Q ss_pred CeeEEEec-cCCCeEEEEe--CC----eEEEEECCCc-eEEEE-eeCCCCCeeEEEEcCCCCCEEEEEeCC-----CcEE
Q 001190 833 AVPCIALS-KNDSYVMSAT--GG----KISLFNMMTF-KVMTT-FMSPPPASTFLAFHPQDNNIIAIGTED-----STIH 898 (1128)
Q Consensus 833 ~v~~~~~s-~dg~~la~~~--dg----~i~vwd~~~~-~~~~~-~~~~~~~v~~l~~s~~d~~~lasg~~d-----g~v~ 898 (1128)
.+...+|| |||++||.+. +| .|+++|+.++ +.+.. +. .....++|+| |++.|+....| ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 57789999 9999998775 23 3999999998 63211 11 1235789999 88777776654 3688
Q ss_pred EEecccceee--eccc-ccccCeeEEEEcCCCCEEEEEcC---CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEc
Q 001190 899 IYNVRVDEVK--SKLK-GHQKRITGLAFSTSLNILVSSGA---DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 972 (1128)
Q Consensus 899 iwd~~~~~~~--~~l~-~h~~~V~~l~~s~d~~~l~s~~~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 972 (1128)
++++.+++.. ..+. .+..-...+.|||||++|+..+. ...|.++|+.++...... ....... ......+.|+
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~-~~l~~~~-~~~~~s~~~~ 328 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTL-EIVRPRE-KGVRYDVQMH 328 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCE-EESSCCC-TTCCEEEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCcee-EEeecCC-CCceEEEeee
Confidence 8888776422 2222 12234568899999998886553 346888999875311100 1111111 1233334443
Q ss_pred CCCCEEEE-Ee-c----CeEEEEecCCcccccc-cccCCCCCCCeEEEEEeeCCCEE-EEEecCCc--EEEEec
Q 001190 973 ADQVRMLV-VH-E----TQLAIYDASKMERIRQ-WTPQDALSAPISCAVYSCNSQLV-FATFCDGN--IGVFDA 1036 (1128)
Q Consensus 973 ~d~~~l~~-~~-d----~~i~v~d~~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l-~t~~~dg~--i~vwd~ 1036 (1128)
. |..|+. +. + ..|..+++.++..... +..+ ...+.--.++.++++| ++...++. |+++++
T Consensus 329 ~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~---~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 329 G-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH---SEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp T-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC---CSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred e-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC---CCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 3 555544 43 2 2567777665322222 2222 2222222344445554 45667775 555565
No 285
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.19 E-value=0.00016 Score=87.42 Aligned_cols=235 Identities=10% Similarity=-0.017 Sum_probs=130.1
Q ss_pred CeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeCCCCC-eeEEEEcCCCCCEEEEEe-CC-----CcEEEEecc
Q 001190 833 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGT-ED-----STIHIYNVR 903 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~d~~~lasg~-~d-----g~v~iwd~~ 903 (1128)
...++++..+|+++++|+ ++.+.+||..+.+-...-..+..+ -.++++.+ ++++++.|+ .+ ..+.+||..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence 344678889999999987 457999999876543322222222 23556666 889999998 44 579999998
Q ss_pred cceeeec-----ccccccCeeEEEEcCCCCEEEEEcCCC---------cEEEEECCCCcccceeEEeecC---CCCCCCc
Q 001190 904 VDEVKSK-----LKGHQKRITGLAFSTSLNILVSSGADA---------QLCVWSIDTWEKRKSVTIHIPA---GKTPTGD 966 (1128)
Q Consensus 904 ~~~~~~~-----l~~h~~~V~~l~~s~d~~~l~s~~~Dg---------~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v 966 (1128)
+++-... ....... ....+..+++.++.++.|| .+..||..+............. .......
T Consensus 323 t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred CCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 7643221 0000000 0012234555555565544 4678888776533221111100 0000123
Q ss_pred cEEEEcC-CCCEEEEEe-cC-----------eEEEEecCCccccccc--ccCCCCCCCeEEEEEeeCCCEEEEEecC---
Q 001190 967 TRVQFNA-DQVRMLVVH-ET-----------QLAIYDASKMERIRQW--TPQDALSAPISCAVYSCNSQLVFATFCD--- 1028 (1128)
Q Consensus 967 ~~v~~s~-d~~~l~~~~-d~-----------~i~v~d~~~~~~~~~~--~~~~~h~~~v~~l~~s~dg~~l~t~~~d--- 1028 (1128)
..+.|.. +++.+++|. ++ .+.+||..+....... .... ...-.+++..+||++++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCC
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCc
Confidence 4455544 667766653 21 5778887766543322 1111 2222355667899999998854
Q ss_pred --------CcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEEC
Q 001190 1029 --------GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT 1082 (1128)
Q Consensus 1029 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~ 1082 (1128)
..+.+||..+++-.. +.. ++.... .| .+....| ++++++.||.
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~W~~-~~~---~~~~R~--~h----s~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDTFYK-QNP---NSIVRV--YH----SISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEEE-CCC---CSSCCC--TT----EEEEECT-TSCEEEEECC
T ss_pred CcCCCCcccceEEEcCCCCceee-cCC---CCCccc--cc----cHhhcCC-CcEEEecCCC
Confidence 468999998866433 221 111111 12 2233446 6899999985
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.19 E-value=0.00081 Score=75.17 Aligned_cols=232 Identities=9% Similarity=0.002 Sum_probs=148.7
Q ss_pred CeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc----eeeecccccccCee
Q 001190 844 SYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD----EVKSKLKGHQKRIT 919 (1128)
Q Consensus 844 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~----~~~~~l~~h~~~V~ 919 (1128)
.+|+.+....|+..++.......... ....+..++|++.++.++.+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 46667777889999998765544443 45678899999855666666667889999988752 22222332334677
Q ss_pred EEEEcCC-CCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe---cCeEEEEecCCcc
Q 001190 920 GLAFSTS-LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKME 995 (1128)
Q Consensus 920 ~l~~s~d-~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d~~i~v~d~~~~~ 995 (1128)
++++.+. +.+.++-...+.|.+.+++.......... .......++++|.+.+|+.++ .+.|...++....
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC------SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC------CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 8999874 45555666678899999886543222111 114578999999777777654 3678888876433
Q ss_pred cccccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCC
Q 001190 996 RIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1074 (1128)
Q Consensus 996 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1074 (1128)
........ ......|+++++++.|+.+. ..+.|..+|+........+... ..-..+.+++.. .+
T Consensus 237 ~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~----------~~l~~P~gl~v~--~~ 301 (400)
T 3p5b_L 237 IYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE----------KRLAHPFSLAVF--ED 301 (400)
T ss_dssp CEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS----------STTSSEEEEEEE--TT
T ss_pred cEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC----------CCCCCCEEEEEe--CC
Confidence 22222211 45678999999888777765 4678999998754433333210 112234566663 35
Q ss_pred CEEEEEECCCcEEEEcCCCCCCC
Q 001190 1075 NQFAIGLTDGSVKVMEPSESEGK 1097 (1128)
Q Consensus 1075 ~~l~s~~~dg~i~iWd~~~~~~~ 1097 (1128)
.++.+-...+.|..++..+++..
T Consensus 302 ~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 302 KVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp EEEEEESSSCSEEEEESSSCCCC
T ss_pred EEEEecCCCCeEEEEEcCCCCce
Confidence 67777778888999987777543
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.19 E-value=0.00041 Score=78.35 Aligned_cols=252 Identities=8% Similarity=0.019 Sum_probs=149.2
Q ss_pred CeeEEEeccC--CCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC---C-cEEEEecccc
Q 001190 833 AVPCIALSKN--DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---S-TIHIYNVRVD 905 (1128)
Q Consensus 833 ~v~~~~~s~d--g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d---g-~v~iwd~~~~ 905 (1128)
....++++|+ +..|..+. .+.|+.+|..+++..... ........+++++ +++++++...+ . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 3568999985 44555554 578999999887765443 3455689999999 77755554322 1 2333333222
Q ss_pred eee-ecccccccCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-
Q 001190 906 EVK-SKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 982 (1128)
Q Consensus 906 ~~~-~~l~~h~~~V~~l~~s~-d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 982 (1128)
... ..+. .-.....+++.| +|.++++-..++.|+.+|..++.....+. .. .. ......++|+|+|.+|.+++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~~--~~-~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-MM--DT-KGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-EC--SC-CSSCEEEEECTTSSEEEEEET
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-cc--CC-CCCcccEEEeCCCCEEEEEeC
Confidence 110 1111 223456788999 67776666677889999988765422221 11 11 12334699999999777765
Q ss_pred -cCeEEEEecC--Cccc--ccccccC---C---------CCCCCeEEEEE---------eeCCCEEEEEecCCcEEEEec
Q 001190 983 -ETQLAIYDAS--KMER--IRQWTPQ---D---------ALSAPISCAVY---------SCNSQLVFATFCDGNIGVFDA 1036 (1128)
Q Consensus 983 -d~~i~v~d~~--~~~~--~~~~~~~---~---------~h~~~v~~l~~---------s~dg~~l~t~~~dg~i~vwd~ 1036 (1128)
.+.|+.++.. ++.. ...+... . ........+++ .++|.+.++-...+.|++++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 6788887765 2221 1111110 0 01234677999 667776666666788999985
Q ss_pred CCCceEEEeCCCC----CCCCc-ccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCC
Q 001190 1037 DTLRLRCYIAPST----YLSPS-VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1092 (1128)
Q Consensus 1037 ~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~ 1092 (1128)
+|.......... ..... .-....-..+..|+++|.++.++++=...+.|+..+++
T Consensus 373 -~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 -EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 675444332211 00000 00011224578999996578888887788889988765
No 288
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=98.18 E-value=1.9e-06 Score=68.94 Aligned_cols=60 Identities=27% Similarity=0.303 Sum_probs=52.5
Q ss_pred CCcchHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC--------HHHHHHHhhcc-CHHHHHHHHcCC
Q 001190 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFN--------MKYFEEKVQAG-DWDEVEKYLSGF 60 (1128)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~--------~~~~~~~i~~g-~w~~~~~~l~~~ 60 (1128)
|++..+||+.||..||.|.||..||.+|++||+|... ...|.+.+++| .|.+++..++.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLVsllQKGL~Y~~~E~~~~~~ 69 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINED 69 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999987542 66888889999 888888887763
No 289
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.18 E-value=0.00057 Score=69.85 Aligned_cols=204 Identities=12% Similarity=0.104 Sum_probs=130.6
Q ss_pred CCCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEEeeC-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccce
Q 001190 830 LEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 906 (1128)
Q Consensus 830 ~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~-~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~ 906 (1128)
....+..++++|++..|.+.. ++.|...|.. ++.++.+.- .....-.+++.+ ++.++++.-.++.+.++++....
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTC
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCC
Confidence 456799999999877666554 5779999997 888877742 234677889988 78777776677889999886543
Q ss_pred e---eeccc------ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC---CcccceeEEe-ecCCCCCCCccEEEEcC
Q 001190 907 V---KSKLK------GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT---WEKRKSVTIH-IPAGKTPTGDTRVQFNA 973 (1128)
Q Consensus 907 ~---~~~l~------~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~---~~~~~~~~~~-~~~~~~~~~v~~v~~s~ 973 (1128)
. +.... ......-+|+|+|+++.|.++.......||.++. .......... ............++++|
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 2 11111 1334568999999998777776665566666642 1111111000 00011114578999999
Q ss_pred CCCEEEEEe--cCeEEEEecCCcccccccccCCCC------CCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 974 DQVRMLVVH--ETQLAIYDASKMERIRQWTPQDAL------SAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 974 d~~~l~~~~--d~~i~v~d~~~~~~~~~~~~~~~h------~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
....+.+.+ ...+.++|.. ++.+..+....+. -.....|+|.++|+ |+..++-+.++++.-.
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 766555543 5678888865 5554444433210 23668999999998 5556778877777644
No 290
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.15 E-value=0.0032 Score=67.82 Aligned_cols=230 Identities=8% Similarity=-0.009 Sum_probs=139.5
Q ss_pred EEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCC----CeEEE-ecCCCC
Q 001190 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG----RKLFN-FEGHEA 495 (1128)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g----~~~~~-~~~h~~ 495 (1128)
|+.+. ...|+..|+.+++... +.........++|.+++.. ++++-...+.|..++..+ ..... +...-.
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEEC-CCeEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 44443 3458889998865433 2223456789999987664 555666678999999444 22222 322223
Q ss_pred CeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc
Q 001190 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1128)
Q Consensus 496 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~ 575 (1128)
....+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+.+... ..+.|...+... .
T Consensus 78 ~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG-~ 153 (316)
T 1ijq_A 78 APDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG-V 153 (316)
T ss_dssp CCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-C
T ss_pred CcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-C
Confidence 4567777543 33455666678899999987554444444344577899999977766655431 136788888754 3
Q ss_pred eeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcEE
Q 001190 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1128)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i~ 654 (1128)
....+....-.....++++++++.|+.+. ..+.|..+|+....................+++. .+.++++-...+.|.
T Consensus 154 ~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (316)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence 33333222222567799999888887766 5678999998754332222222222234677774 344555555567888
Q ss_pred EEEcccC
Q 001190 655 ILANAIG 661 (1128)
Q Consensus 655 iw~~~~~ 661 (1128)
.++..++
T Consensus 233 ~~~~~~g 239 (316)
T 1ijq_A 233 SANRLTG 239 (316)
T ss_dssp EEETTTC
T ss_pred EEeCCCC
Confidence 8887665
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.06 E-value=0.0006 Score=73.37 Aligned_cols=228 Identities=9% Similarity=-0.010 Sum_probs=142.7
Q ss_pred eEEEEeCCeEEEEECCCce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeee-cccccccCeeEE
Q 001190 845 YVMSATGGKISLFNMMTFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-KLKGHQKRITGL 921 (1128)
Q Consensus 845 ~la~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V~~l 921 (1128)
+|+.+....|+.+++.... ....+. ......+++|++.++.++.+-...+.|+.+++..+.... .+........++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 4555666778899987653 111121 123467899998556677777778899999987663211 222222456789
Q ss_pred EEcCCC-CEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe---cCeEEEEecCCcccc
Q 001190 922 AFSTSL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKMERI 997 (1128)
Q Consensus 922 ~~s~d~-~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d~~i~v~d~~~~~~~ 997 (1128)
++.+.+ .++++-...+.|.+++++..... .+ .. ........++++|.+..|+.++ .+.|..+++.. ...
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-~~----~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~ 157 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VL-FW----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSR 157 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-EC----SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSC
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEE-EE-Ee----CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCe
Confidence 998744 45556566788999998764321 11 11 1114578999999777666654 46788877753 222
Q ss_pred cccccCCCCCCCeEEEEEeeCCCEEEEEe-cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCE
Q 001190 998 RQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQ 1076 (1128)
Q Consensus 998 ~~~~~~~~h~~~v~~l~~s~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 1076 (1128)
..+.... -.....++++++++.|+.+. ..+.|..+|+.......... .....+.++++.. +.+
T Consensus 158 ~~~~~~~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~------------~~~~~P~glav~~--~~l 221 (318)
T 3sov_A 158 FIIINSE--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK------------GSLPHPFALTLFE--DIL 221 (318)
T ss_dssp EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------SCCSCEEEEEEET--TEE
T ss_pred EEEEECC--CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec------------CCCCCceEEEEeC--CEE
Confidence 2221111 35668999999877777655 56789999987433322222 1223456777653 467
Q ss_pred EEEEECCCcEEEEcCCCCCC
Q 001190 1077 FAIGLTDGSVKVMEPSESEG 1096 (1128)
Q Consensus 1077 l~s~~~dg~i~iWd~~~~~~ 1096 (1128)
+.+-...+.|..++..+++.
T Consensus 222 ywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEETTTTEEEEEETTTCCS
T ss_pred EEEecCCCeEEEEECCCCCc
Confidence 77777788899999887764
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.04 E-value=0.00052 Score=72.66 Aligned_cols=196 Identities=9% Similarity=0.177 Sum_probs=124.4
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCC----CC---EEEEEe-C--CCcEEEEecc--cceee
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD----NN---IIAIGT-E--DSTIHIYNVR--VDEVK 908 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d----~~---~lasg~-~--dg~v~iwd~~--~~~~~ 908 (1128)
...+++... .+.+.+||+ +|+.+..+.. +.+..+.+-| + ++ ++++.. . +++|.+|++. +++ +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 334444444 678999999 8899888853 5677777766 2 21 223333 4 5789999773 443 3
Q ss_pred ecccc------cc-cCeeEEEE--cCC-CC-EEEEEcCCCcEEEEECC---CCcccceeEEeecCCCCCCCccEEEEcCC
Q 001190 909 SKLKG------HQ-KRITGLAF--STS-LN-ILVSSGADAQLCVWSID---TWEKRKSVTIHIPAGKTPTGDTRVQFNAD 974 (1128)
Q Consensus 909 ~~l~~------h~-~~V~~l~~--s~d-~~-~l~s~~~Dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 974 (1128)
..+.. .. ..+..+++ ++. ++ +++....+|.+..|++. .+............+ ..+..++..+.
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~ 190 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDE 190 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCC
Confidence 33311 11 55677887 774 44 67788889999999983 332222211121111 56788999998
Q ss_pred CCEEEEEe-cCeEEEEecC-----CcccccccccCCCCCCCeEEEEE--eeCCC-EEEEEe-cCCcEEEEecC-CCceEE
Q 001190 975 QVRMLVVH-ETQLAIYDAS-----KMERIRQWTPQDALSAPISCAVY--SCNSQ-LVFATF-CDGNIGVFDAD-TLRLRC 1043 (1128)
Q Consensus 975 ~~~l~~~~-d~~i~v~d~~-----~~~~~~~~~~~~~h~~~v~~l~~--s~dg~-~l~t~~-~dg~i~vwd~~-~~~~~~ 1043 (1128)
...|+++. +..|..|+.+ ++..+..+..... ...+..|++ .++|+ ||++++ .++++.|||.+ +.+.+.
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l-~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHL-TRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSB-CSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCcc-ccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 88888886 5556666654 2334444322211 346888888 45666 777776 67799999997 777777
Q ss_pred EeC
Q 001190 1044 YIA 1046 (1128)
Q Consensus 1044 ~~~ 1046 (1128)
.+.
T Consensus 270 ~f~ 272 (355)
T 3amr_A 270 DFR 272 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=0.00053 Score=77.49 Aligned_cols=240 Identities=8% Similarity=0.120 Sum_probs=135.7
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCC----eEEEEec
Q 001190 408 SVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK----LIKVWEL 482 (1128)
Q Consensus 408 ~V~~l~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~----~i~vWd~ 482 (1128)
....|+++| ++..|..+...+.|+.+|.+++.... +.........++|+++|+. ++++...++ .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~----~~~~~~~P~~ia~d~~G~~-lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST----VYSGLSKVRTICWTHEADS-MIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE----EECCCSCEEEEEECTTSSE-EEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE----EecCCCCcceEEEeCCCCE-EEEEeCCCCcccceEEEEeC
Confidence 567899998 46666666655789999998765322 3234556889999999994 233333222 3444444
Q ss_pred CCCeE--EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecC-CCCeEEEEEEcCCCCeEEEeeec
Q 001190 483 SGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTS 559 (1128)
Q Consensus 483 ~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~~~~ 559 (1128)
.+... ..+.. ......+++++. ++.++++-..++.|..++.+.......... .......++|+|+|++|+.+..
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~- 289 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV- 289 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET-
T ss_pred CCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC-
Confidence 44332 22321 223456677553 455666666778899998875543222222 2345789999999996666543
Q ss_pred cCCCceEEEEeCCC--Cce--eeEeccc------cC--------Ccee-EEEEe--------CCCCEEEEEECCCcEEEE
Q 001190 560 KDGDSFLVEWNESE--GTI--KRTYAGF------RK--------KSNG-VVQFD--------TTQNHFLAVGEDSQIKFW 612 (1128)
Q Consensus 560 ~~~~~~i~~wd~~~--~~~--~~~~~~~------~~--------~~v~-~~~~~--------~~~~~l~~~s~dg~i~iw 612 (1128)
..+.|..++... ++. ...+.+. .+ .... .++.. +++...++=...+.|+.+
T Consensus 290 --~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i 367 (430)
T 3tc9_A 290 --NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRIL 367 (430)
T ss_dssp --TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEE
T ss_pred --CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEE
Confidence 477888877653 222 2222221 00 0111 34443 234444444456788888
Q ss_pred ECCCCeeeEEEec---------CC------CCCCcceEEEcCC-CCEEEEEEcCCcEEEEEc
Q 001190 613 DMDNVNILTSTDA---------EG------GLPNLPRLRFSKE-GNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 613 d~~~~~~~~~~~~---------~~------~~~~v~~v~~sp~-~~~l~~~~~dg~i~iw~~ 658 (1128)
+ .++........ .+ .......++++|+ +.++++-...+.|+.++.
T Consensus 368 ~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 368 T-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp C-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred C-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 8 45654433321 00 0123568888885 444444444667777664
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.01 E-value=0.0056 Score=65.75 Aligned_cols=232 Identities=10% Similarity=0.023 Sum_probs=141.5
Q ss_pred ccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEE-eCCCeEEEEEccCCCccee
Q 001190 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQ 443 (1128)
Q Consensus 365 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~vwd~~~~~~~~~ 443 (1128)
....|+..++..+..... .+......+..++|.+.+..|..+ ...+.|..++.+++.....
T Consensus 11 ~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~ 72 (318)
T 3sov_A 11 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN 72 (318)
T ss_dssp CEEEEEEEETTCTTSCCE------------------EEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE
T ss_pred ccCeEEEEECCCCceEEE------------------EEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE
Confidence 457899999876531110 011112356789999965555544 4577899999887642211
Q ss_pred ceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec-CCCCCeEEEeccCCCCccEEEEEe--ccCcE
Q 001190 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTA--IDGKI 520 (1128)
Q Consensus 444 ~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i 520 (1128)
.+...-.....+++.+.+.. +.++-...+.|.+++.+|.....+. ........+++.+. +..|+.+. ..+.|
T Consensus 73 --~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~--~g~ly~td~~~~~~I 147 (318)
T 3sov_A 73 --VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS--SGFMYWTDWGEVPKI 147 (318)
T ss_dssp --EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG--GTEEEEEECSSSCEE
T ss_pred --EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC--CCEEEEEecCCCCEE
Confidence 12222345778999976654 4556666789999996665544443 33455688888763 23444444 35778
Q ss_pred EEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEE
Q 001190 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1128)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1128)
...+++...........-.....+++++++..|+.+-. ..+.|..+|+..........+... ....+++.. +..+
T Consensus 148 ~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~-~~ly 222 (318)
T 3sov_A 148 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFE-DILY 222 (318)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCCS-CEEEEEEET-TEEE
T ss_pred EEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCCC-CceEEEEeC-CEEE
Confidence 88887654433333334456789999998888877643 578899999865433222322222 345566643 3333
Q ss_pred EEEECCCcEEEEECCCCeeeEEEe
Q 001190 601 LAVGEDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 601 ~~~s~dg~i~iwd~~~~~~~~~~~ 624 (1128)
++-...+.|..++..+++....+.
T Consensus 223 wtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEecCCCeEEEEECCCCCceEEEe
Confidence 444467788888887777665554
No 295
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.00 E-value=0.0075 Score=67.27 Aligned_cols=231 Identities=9% Similarity=0.002 Sum_probs=144.2
Q ss_pred EEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCC-----CeEEEecCCC
Q 001190 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG-----RKLFNFEGHE 494 (1128)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g-----~~~~~~~~h~ 494 (1128)
+|+.+ ....|+..++.+..... +......+..++|.+.+.. +.++-...+.|..++..+ .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 34678888988765332 2334567889999987664 455555678899998544 2223333234
Q ss_pred CCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCC
Q 001190 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1128)
Q Consensus 495 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~ 574 (1128)
.....+++.+. .+.+.++-...+.|.+.+++.......+.........+++.|.+.+|+..-. ...+.|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 45678887653 3456666667789999988765555555445556899999997777665532 12367888887654
Q ss_pred ceeeEeccccCCceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCCcE
Q 001190 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1128)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg~i 653 (1128)
.........- .....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+.|
T Consensus 236 ~~~~~~~~~l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECCC-CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 4333333221 2567799999888888775 5678999998765444444332222334566663 33444555556778
Q ss_pred EEEEcccC
Q 001190 654 KILANAIG 661 (1128)
Q Consensus 654 ~iw~~~~~ 661 (1128)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88886666
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0049 Score=69.42 Aligned_cols=256 Identities=8% Similarity=0.010 Sum_probs=148.8
Q ss_pred CeeEEEecc-CCCeEEEEe-C-CeEEEEECCCceEEEEeeCC---CCCeeEEEE-------cCCCCCEEEEEeCCC----
Q 001190 833 AVPCIALSK-NDSYVMSAT-G-GKISLFNMMTFKVMTTFMSP---PPASTFLAF-------HPQDNNIIAIGTEDS---- 895 (1128)
Q Consensus 833 ~v~~~~~s~-dg~~la~~~-d-g~i~vwd~~~~~~~~~~~~~---~~~v~~l~~-------s~~d~~~lasg~~dg---- 895 (1128)
....|+|+| ++..|.++. . +.|++.|..++......... ......++| ++ +++.|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455555554 3 56999999887776554432 235789999 99 777555554443
Q ss_pred ---cEEEEeccc-ceee-----ecccccccCeeEEEEcCC-CCEEEEEcCCCcEEEEECC-------CCcc------c--
Q 001190 896 ---TIHIYNVRV-DEVK-----SKLKGHQKRITGLAFSTS-LNILVSSGADAQLCVWSID-------TWEK------R-- 950 (1128)
Q Consensus 896 ---~v~iwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-~~~l~s~~~Dg~i~iwd~~-------~~~~------~-- 950 (1128)
.|.+++... +... ..+.. -.....++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665443 2221 12211 123457889994 5566667778889999998 5543 0
Q ss_pred --ceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecC--Cccc--ccccccC---C---------CCCCCe
Q 001190 951 --KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDAS--KMER--IRQWTPQ---D---------ALSAPI 1010 (1128)
Q Consensus 951 --~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~--~~~~--~~~~~~~---~---------~h~~~v 1010 (1128)
......... ......++|+|+|.+|.+++ .+.|+.++.. .+.. ...+... . +.-...
T Consensus 298 g~~~~l~~~~~---~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 298 NTFKQLFTIAD---PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TTEEEEEECSS---SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred cccceeEecCC---CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 001111111 14567899999999777664 6788886543 2211 0111110 0 011233
Q ss_pred E-EEEEe-------eCCCEEEEEecCCcEEEEecCCCceEEEeCCCC-----------CCCCc-ccCCCCccceEEEEEe
Q 001190 1011 S-CAVYS-------CNSQLVFATFCDGNIGVFDADTLRLRCYIAPST-----------YLSPS-VLNGSQTVYPLVVAAH 1070 (1128)
Q Consensus 1011 ~-~l~~s-------~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~ 1070 (1128)
. .++.. ++|.+.++=.....|+.++ .+|.. .++.... ..... .-..+.-..+..|+++
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 4 44454 4566655555778899999 56754 3443221 00111 0001222457899999
Q ss_pred cCCCCEEEEEECCCcEEEEcCCCCC
Q 001190 1071 PLEPNQFAIGLTDGSVKVMEPSESE 1095 (1128)
Q Consensus 1071 p~~~~~l~s~~~dg~i~iWd~~~~~ 1095 (1128)
+.++.++++=...+.|+.+++....
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCc
Confidence 8447777777778899999887654
No 297
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.92 E-value=0.0023 Score=72.14 Aligned_cols=239 Identities=9% Similarity=0.101 Sum_probs=135.0
Q ss_pred cceEEEEEccC--CCEEEEEeCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC---Ce-EEEE
Q 001190 407 ISVSRVAWSPD--GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD---KL-IKVW 480 (1128)
Q Consensus 407 ~~V~~l~~spd--g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d---~~-i~vW 480 (1128)
.....++|+|+ +..|..+...+.|+.+|..++.... +.........++|+++|+ ++++.... .. +...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 34678999995 4555555544889999998775432 333445688999999999 45554321 22 3334
Q ss_pred ecCCCeE--EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceee-ec-CCCCeEEEEEEcCCCCeEEEe
Q 001190 481 ELSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YD-APGHWCTTMLYSADGSRLFSC 556 (1128)
Q Consensus 481 d~~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~-~~~~~i~~~~~s~~g~~l~~~ 556 (1128)
+..+... ..+. .......+++++. ++.+.++-..++.|+.++.+++..... .. ........++|+|+|++|+.+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 4222211 1111 1223455666552 445555555678898888875544122 11 122234579999999976665
Q ss_pred eeccCCCceEEEEeCC--CCce--eeEeccc------c--------CCceeEEEE---------eCCCCEEEEEECCCcE
Q 001190 557 GTSKDGDSFLVEWNES--EGTI--KRTYAGF------R--------KKSNGVVQF---------DTTQNHFLAVGEDSQI 609 (1128)
Q Consensus 557 ~~~~~~~~~i~~wd~~--~~~~--~~~~~~~------~--------~~~v~~~~~---------~~~~~~l~~~s~dg~i 609 (1128)
-. ..+.|+.++.. ++.. ...+.+. . -.....+++ .+++..+++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 43 47789998765 3322 1222221 0 012345788 5666555555567889
Q ss_pred EEEECCCCeeeEEEecCCC----------------CCCcceEEEc-CCCCEEEEEEcCCcEEEEEc
Q 001190 610 KFWDMDNVNILTSTDAEGG----------------LPNLPRLRFS-KEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s-p~~~~l~~~~~dg~i~iw~~ 658 (1128)
+.++. ++...... ..+. ......++++ +++.++++-...+.|+.+++
T Consensus 368 ~~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 368 RVLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 99985 56443332 2111 1224578888 45555444445667776654
No 298
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.92 E-value=0.016 Score=59.81 Aligned_cols=239 Identities=13% Similarity=0.143 Sum_probs=151.8
Q ss_pred EEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCCe
Q 001190 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1128)
Q Consensus 350 v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 429 (1128)
+-.+|..+ ++|.-. ..++.|+|+++.+.+.... + ...|.-=.|-.+. .|+-.+ +..
T Consensus 72 AIMnP~~~-ViALra-g~~LQiFnletK~klks~~-----------------~---~e~VvfWkWis~~-~L~lVT-~ta 127 (365)
T 2xzh_A 72 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT-----------------M---TDDVTFWKWISLN-TVALVT-DNA 127 (365)
T ss_dssp EEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE-----------------C---SSCEEEEEECSSS-EEEEEE-SSE
T ss_pred eeeCCCcc-EEEEec-CCeEEEechHHhhhhccee-----------------c---CCccEEEEecCCC-eEEEEc-CCc
Confidence 34488877 777654 6799999999988775411 1 2367777775443 444444 346
Q ss_pred EEEEEccCCCcceeceeecccc----cceeEEEEecCCCeEEEEEec------CCCeEEEEecCCCeEEEecCCCCCeEE
Q 001190 430 IQLYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1128)
Q Consensus 430 i~vwd~~~~~~~~~~~~~~~h~----~~v~~l~fs~d~~~~~l~s~s------~d~~i~vWd~~g~~~~~~~~h~~~v~~ 499 (1128)
|.-|+++....... .+..|. ..|.....+++.++ ++++|- -.|.+.+|..+.+.-+.+.||.+....
T Consensus 128 VyHWs~~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~ 204 (365)
T 2xzh_A 128 VYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQ 204 (365)
T ss_dssp EEEEESSTTCCCEE--EEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEE
T ss_pred EEEEcccCCCCCce--eeecchhcccceEEEEEECCCCCE-EEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEE
Confidence 99999976432222 244442 46777778889996 333332 236788999888888999999887766
Q ss_pred EeccCCCCcc-EEEEEec---cCcEEEEecCCC-Cce-------eee--cC--CCCeEEEEEEcCCCCeEEEeeeccCCC
Q 001190 500 ICPHHKENIQ-FIFSTAI---DGKIKAWLYDTM-GSR-------VDY--DA--PGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1128)
Q Consensus 500 ~~~~~~~~~~-~l~s~~~---dg~i~~wd~~~~-~~~-------~~~--~~--~~~~i~~~~~s~~g~~l~~~~~~~~~~ 563 (1128)
+.+....... +++.+.. .+.+++-++... ... ..+ .. ...-.-++..|+.-..+.... .-
T Consensus 205 ~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviT----K~ 280 (365)
T 2xzh_A 205 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT----KY 280 (365)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEE----TT
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEe----CC
Confidence 6554332222 3333332 268888888543 111 111 11 133556788888877777766 48
Q ss_pred ceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeee
Q 001190 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1128)
Q Consensus 564 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~ 620 (1128)
|.+++||+.++.++..-+-..+ .+...+......-+++....|.|.--.++....+
T Consensus 281 G~ihlyDleTgt~i~~nrIS~d-~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 281 GYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp SEEEEEETTTCCEEEEEECCSS-CEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred cEEEEEEcccCcEEEEeccCCC-ceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 9999999999999877665554 5555555555566667777777766666554443
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.82 E-value=0.018 Score=69.60 Aligned_cols=213 Identities=10% Similarity=-0.021 Sum_probs=130.6
Q ss_pred CCcceEEEEEccCCCEEEEE-eCCCeEEEEEccCCCcce-eceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEec
Q 001190 405 VPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1128)
Q Consensus 405 h~~~V~~l~~spdg~~las~-~~d~~i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~ 482 (1128)
....+..|+|.+.+..|... ...+.|+.+++....... ....+.........|++.+.++. +.++-...+.|.+.+.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence 34567899999965555544 456789989887532100 01123334456778999988875 4566667789999997
Q ss_pred CCCeEEEec-CCCCCeEEEeccCCCCccEEEEEecc-CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 483 SGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 483 ~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
+|.....+. ........|++.+.. +.++++-... +.|...+++.................|++++.+..|+.+-.
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~-- 577 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 577 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC--
Confidence 777665554 334457889987642 3344443233 67888888765554444444567899999988888777643
Q ss_pred CCCceEEEEeCCCCceeeEeccccC-CceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCeeeEEEe
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~ 624 (1128)
+...|...++........+..... .....+++ .+.+|+.+. ..+.|...|..+++.+..+.
T Consensus 578 -~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -CCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 467899999865544443332211 12233444 344555554 55777777877776555553
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.82 E-value=0.0074 Score=73.02 Aligned_cols=222 Identities=9% Similarity=-0.020 Sum_probs=132.6
Q ss_pred ceEEeecCCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 336 ~~~~~~~h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
.....+.....+.+++|++.+.+++.+-...+.|+.+++........ ...++...-.....|++.
T Consensus 415 ~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~---------------~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 415 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp CCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCCCEEEEE
T ss_pred cceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc---------------eeEEEecCCCCcceeeee
Confidence 33444455667889999996655666666678888888865321000 011133234567789999
Q ss_pred cCCCEEEEE-eCCCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCC-
Q 001190 416 PDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH- 493 (1128)
Q Consensus 416 pdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h- 493 (1128)
+.++.|..+ ...+.|.+.+++.... +. .+.........|++.|.+..+++.-.+..+.|.+.+.+|.....+...
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~-~~--l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~ 556 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKR-KT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 556 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSE-EE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeE-EE--EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC
Confidence 888666655 4578899999886442 22 122344568899999986643333223336788888777766655432
Q ss_pred CCCeEEEeccCCCCccEEEEEeccCcEEEEecCCCCceeeecCC--CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC
Q 001190 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1128)
Q Consensus 494 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~ 571 (1128)
-.....|++.+. ++.+.++-...+.|...+++........... -....+|++ ++.+|+..-. ..+.|...|.
T Consensus 557 l~~P~GLavD~~-~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~---~~~~I~~~dk 630 (791)
T 3m0c_C 557 IQWPNGITLDLL-SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI---INEAIFSANR 630 (791)
T ss_dssp CSCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEET---TTTEEEEEET
T ss_pred CCCceEEEEecC-CCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEEC---CCCEEEEEeC
Confidence 346788888654 3344444455678988988765554444332 223456665 3345554432 4677777777
Q ss_pred CCCceeeEec
Q 001190 572 SEGTIKRTYA 581 (1128)
Q Consensus 572 ~~~~~~~~~~ 581 (1128)
.+|+.+..+.
T Consensus 631 ~tG~~~~~l~ 640 (791)
T 3m0c_C 631 LTGSDVNLLA 640 (791)
T ss_dssp TTCCCCEEEE
T ss_pred CCCcceEEee
Confidence 7776555554
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.76 E-value=0.0041 Score=65.83 Aligned_cols=186 Identities=12% Similarity=0.171 Sum_probs=118.9
Q ss_pred EEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCC--Ccc---EEEEEe-c--cCcEEEEecCCCCcee-eecC-
Q 001190 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE--NIQ---FIFSTA-I--DGKIKAWLYDTMGSRV-DYDA- 536 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~--~~~---~l~s~~-~--dg~i~~wd~~~~~~~~-~~~~- 536 (1128)
+++.....+-+.++|.+|+.++.+.. +.++.+.+.+.- .|+ ++++.. . +++|++|+++.....+ .+..
T Consensus 42 ~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 56666667899999999999999864 556666554310 111 233333 3 5789999885322222 2211
Q ss_pred -----CC-CeEEEEEE--cCC-CCeEEEeeeccCCCceEEEEeC-------CCCceeeEeccccCCceeEEEEeCCCCEE
Q 001190 537 -----PG-HWCTTMLY--SAD-GSRLFSCGTSKDGDSFLVEWNE-------SEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1128)
Q Consensus 537 -----~~-~~i~~~~~--s~~-g~~l~~~~~~~~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1128)
.. ..+..+|+ ++. +++.+.... .++.+..|++ .+.+.+++|.... .+..|...+...+|
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~---k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g~L 194 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTG---KEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYGRL 194 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTTEE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEEC---CCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCCeE
Confidence 11 45666777 774 443333332 4688888887 2346677777654 57788899989999
Q ss_pred EEEECCCcEEEEECC-----CCeeeEEEecCCCCCCcceEEE--cCCCC-EEEEEE-cCCcEEEEEcc
Q 001190 601 LAVGEDSQIKFWDMD-----NVNILTSTDAEGGLPNLPRLRF--SKEGN-LLAVTT-ADNGFKILANA 659 (1128)
Q Consensus 601 ~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--sp~~~-~l~~~~-~dg~i~iw~~~ 659 (1128)
+.+-++..|..++.+ +++.+..+....-...+..|++ .++++ +|++++ .+.++.+|+..
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999998777777755 3455555433222235777887 45655 666666 57789999986
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=0.0066 Score=68.33 Aligned_cols=244 Identities=11% Similarity=0.118 Sum_probs=136.2
Q ss_pred ceEEEEEcc-CCCEEEEEe-CCCeEEEEEccCCCcceeceee-cccccceeEEEE-------ecCCCeEEEEEecCCC--
Q 001190 408 SVSRVAWSP-DGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAF-------AYPNKLLCVVTCGDDK-- 475 (1128)
Q Consensus 408 ~V~~l~~sp-dg~~las~~-~d~~i~vwd~~~~~~~~~~~~~-~~h~~~v~~l~f-------s~d~~~~~l~s~s~d~-- 475 (1128)
....|+|+| ++..|..+. ..+.|++.|.+++..... ... .........++| +++|.. |+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l-~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSP-LNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEE-ECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEE-EccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 455555554 446788888887654321 111 112335889999 999984 44443332
Q ss_pred -----eEEEEe-cC-CCeE-----EEecCCCCCeEEEeccCCCCccEEEEEeccCcEEEEecC-------CCCc------
Q 001190 476 -----LIKVWE-LS-GRKL-----FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-------TMGS------ 530 (1128)
Q Consensus 476 -----~i~vWd-~~-g~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~-------~~~~------ 530 (1128)
.|.+.+ .. |... ..+.... ....+++++. ++.++++-..++.|..+|++ ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366776 22 2321 1222111 2345666653 44566666778889999987 4432
Q ss_pred -----e-eeec-CCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeC--CCCce--eeEeccc------cC--------
Q 001190 531 -----R-VDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTI--KRTYAGF------RK-------- 585 (1128)
Q Consensus 531 -----~-~~~~-~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~--~~~~~--~~~~~~~------~~-------- 585 (1128)
. ..+. ......+.++|+|+|+.|+.+-. ..+.|+.++. .++.. ...+.+. .+
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 0 1122 23345789999999996665532 4778888654 33332 1222221 00
Q ss_pred Ccee-EEEEe-------CCCCEEEEEECCCcEEEEECCCCeeeEEEecCC----------------------CCCCcceE
Q 001190 586 KSNG-VVQFD-------TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG----------------------GLPNLPRL 635 (1128)
Q Consensus 586 ~~v~-~~~~~-------~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v 635 (1128)
.... .++.. .++..+++=..+..|+.++ .++. +.++...+ .......|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 0122 34554 3455555555778899998 4554 33333221 01224578
Q ss_pred EEcCC-CCEEEEEEcCCcEEEEEcccC
Q 001190 636 RFSKE-GNLLAVTTADNGFKILANAIG 661 (1128)
Q Consensus 636 ~~sp~-~~~l~~~~~dg~i~iw~~~~~ 661 (1128)
+++++ +.++++-...+.|+.+++...
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 88886 555555555677888877654
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.71 E-value=0.046 Score=56.56 Aligned_cols=234 Identities=16% Similarity=0.170 Sum_probs=149.2
Q ss_pred eeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc-ceeeeccc
Q 001190 834 VPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKSKLK 912 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~ 912 (1128)
..+.-.+|..+.+|.-....+.+||+++.+.+..+.- ...|.--.|-. .+.|+..+ +..|+-|++.. ..+.+.+.
T Consensus 69 AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFd 144 (365)
T 2xzh_A 69 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 144 (365)
T ss_dssp CSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEE
T ss_pred cceeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeee
Confidence 3456678999988888888899999999988888764 34677777764 45666555 67899999974 34555555
Q ss_pred ccc----cCeeEEEEcCCCCEEEEEcC-------CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCC-----C
Q 001190 913 GHQ----KRITGLAFSTSLNILVSSGA-------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ-----V 976 (1128)
Q Consensus 913 ~h~----~~V~~l~~s~d~~~l~s~~~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~-----~ 976 (1128)
.|. ..|..-..+++.++++..|- .|.+.+|..+.+.. +..++|. ..-..+-.+| .
T Consensus 145 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s------Q~ieGha---a~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------QPIEGHA---ASFAQFKMEGNAEEST 215 (365)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE------EEECCSE---EEEEEECCTTCSSCEE
T ss_pred cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc------ceeeeee---eeeEEEecCCCCCCce
Confidence 443 45777888999998876553 36788999887532 2223332 1111222222 2
Q ss_pred EEEEEe----cCeEEEEecCCc---cc------ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEE
Q 001190 977 RMLVVH----ETQLAIYDASKM---ER------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC 1043 (1128)
Q Consensus 977 ~l~~~~----d~~i~v~d~~~~---~~------~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~ 1043 (1128)
+++.+. .++++|-++... .. +..+.+.++-..-..++..|+.-..++.-..-|.|++||++||.++.
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 333332 368999998543 11 11122222234555688888888888888899999999999999998
Q ss_pred EeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1044 YIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
.-+-. .+.+++. +.+...+ =++.....|.|.--.+.+
T Consensus 296 ~nrIS----------~d~iF~t--a~~~~~~-Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 296 MNRIS----------GETIFVT--APHEATA-GIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEECC----------SSCEEEE--EEEGGGT-EEEEEETTCEEEEEEECT
T ss_pred EeccC----------CCceEEe--cccCCCC-cEEEEcCCCEEEEEEECc
Confidence 77721 3444443 3333223 345555777766544443
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.70 E-value=0.00026 Score=85.39 Aligned_cols=207 Identities=10% Similarity=-0.008 Sum_probs=125.3
Q ss_pred CCeeEEEeccCCCeEEEEe--CCeEEEEECCC----ceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc
Q 001190 832 EAVPCIALSKNDSYVMSAT--GGKISLFNMMT----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~----~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 905 (1128)
..+..++|++++..|..+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3466789999888777775 57899999875 22222222222345678888646677776667789999998765
Q ss_pred eeeecccccccCeeEEEEcCCCCEEEEEcC--CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-
Q 001190 906 EVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 982 (1128)
Q Consensus 906 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 982 (1128)
.....+.........+++.|++.+|+.+.. .+.|..++++..... .+ . .. .......|+|+|++..|+.++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l-~---~~-~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL-V---TE-NIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EE-S---CS-SCSSCCCEEECTTTCCEEEEET
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EE-E---eC-CCCCccEEEEeccCCEEEEEec
Confidence 433333322345678899987665554432 267877777643221 11 0 01 114567899999887777765
Q ss_pred -cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeC
Q 001190 983 -ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 983 -d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1046 (1128)
.+.|.++++..... ..+............|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 560 ~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 560 KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 56899999864322 222211100223345555433 334444567889999999998887775
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.65 E-value=0.011 Score=64.66 Aligned_cols=225 Identities=13% Similarity=0.109 Sum_probs=121.0
Q ss_pred CeeEEEeccCCCeEEEEeCCeEEEEECCCceE--EEEee---CCCCCeeEEEEcCCC----CCEEEEEeCC-----CcEE
Q 001190 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKV--MTTFM---SPPPASTFLAFHPQD----NNIIAIGTED-----STIH 898 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~--~~~~~---~~~~~v~~l~~s~~d----~~~lasg~~d-----g~v~ 898 (1128)
....++|.|||+++++-.+|.|.+++ +++. +..+. ........++|+| + +.+.++-..+ +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 46789999999977765589999998 4432 22221 1234688999999 5 5555544433 6788
Q ss_pred EEecccce-----e-eeccc---ccccCeeEEEEcCCCCEEEEEcCC-------------CcEEEEECCCC---------
Q 001190 899 IYNVRVDE-----V-KSKLK---GHQKRITGLAFSTSLNILVSSGAD-------------AQLCVWSIDTW--------- 947 (1128)
Q Consensus 899 iwd~~~~~-----~-~~~l~---~h~~~V~~l~~s~d~~~l~s~~~D-------------g~i~iwd~~~~--------- 947 (1128)
.|+...+. . +..+. +.......++|.|||.++++.+.. +.|.-++.+..
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 88876431 1 11132 111123589999999877765422 34444444420
Q ss_pred ---cccceeEEeecCCCCCCCccEEEEcC-CCCEEEEEe-cCeE------EEEecCCccc------------------cc
Q 001190 948 ---EKRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH-ETQL------AIYDASKMER------------------IR 998 (1128)
Q Consensus 948 ---~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~-d~~i------~v~d~~~~~~------------------~~ 998 (1128)
........ ++ .....++|+| +|.++++-. .+.+ .|.-+..+.. +.
T Consensus 189 ~~~~~~~i~a~----G~--rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 189 RRGARPEVYSL----GH--RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTSCTTEEEE----CC--SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CCCCCccEEEE----cC--CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 00011110 00 3356789999 566555532 2221 2333333321 11
Q ss_pred ccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceE---EEeCCCCCCCCcccCCCCccceEEEEEecCCCC
Q 001190 999 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLR---CYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1075 (1128)
Q Consensus 999 ~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1075 (1128)
.+. +......++| .+|+++++....+.|...+++..... .... . .+ .....+..+++.| |+.
T Consensus 263 ~~~----~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~--~-----~~--~~~~rp~~v~~~p-dG~ 327 (352)
T 2ism_A 263 FWP----QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVE--T-----AL--SGFGRLREVQVGP-DGA 327 (352)
T ss_dssp ECT----TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEE--E-----EE--ESSCCEEEEEECT-TSC
T ss_pred ecC----CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchh--e-----ec--ccCCCeeEEEECC-CCc
Confidence 110 1234567888 57776666556677777777644311 0000 0 00 1123578899998 577
Q ss_pred EEEEEE
Q 001190 1076 QFAIGL 1081 (1128)
Q Consensus 1076 ~l~s~~ 1081 (1128)
++++..
T Consensus 328 lyv~~~ 333 (352)
T 2ism_A 328 LYVTTS 333 (352)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 766654
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.65 E-value=0.052 Score=58.50 Aligned_cols=241 Identities=13% Similarity=0.138 Sum_probs=153.8
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCC
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 428 (1128)
++-.+|..+ ++|.=. ..++.|+|+++.+.+.... + ...|..=.|-.+. .|+-.+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~-----------------~---~e~VvfWkWis~~-~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT-----------------M---TDDVTFWKWISLN-TVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEE-----------------C---SSCCCEEEEEETT-EEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhccee-----------------c---CCCceEEEecCCC-eEEEEc-CC
Confidence 455688877 666653 6799999999988775311 1 2356666665443 454443 45
Q ss_pred eEEEEEccCCCcceeceeeccc----ccceeEEEEecCCCeEEEEEec------CCCeEEEEecCCCeEEEecCCCCCeE
Q 001190 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h----~~~v~~l~fs~d~~~~~l~s~s------~d~~i~vWd~~g~~~~~~~~h~~~v~ 498 (1128)
.|.-|+++....... .+..| ...|.....+++.++ ++++|- -.|.+.+|..+.+.-+.+.||.+...
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeeccccccchheeeeeeeE
Confidence 799999975332221 34444 346777788899996 333332 24678899977888889999988776
Q ss_pred EEeccCCCCcc-EEEEEecc---CcEEEEecCCC-Cc-------eeeec----CCCCeEEEEEEcCCCCeEEEeeeccCC
Q 001190 499 SICPHHKENIQ-FIFSTAID---GKIKAWLYDTM-GS-------RVDYD----APGHWCTTMLYSADGSRLFSCGTSKDG 562 (1128)
Q Consensus 499 ~~~~~~~~~~~-~l~s~~~d---g~i~~wd~~~~-~~-------~~~~~----~~~~~i~~~~~s~~g~~l~~~~~~~~~ 562 (1128)
.+.+....... ++..+... +.+++-++... .. ...+. ....-..++.+|+.-..+.... .
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT----K 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT----K 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE----T
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe----c
Confidence 66654332222 33333332 78888888543 11 11111 1133566788888888777776 4
Q ss_pred CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeE
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 621 (1128)
-|.+++||+.++.++..-+-..+ .+...+......-++.....|.|.--.++....+.
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred CceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEccccchh
Confidence 89999999999999877665544 56655566666667777777777666666555443
No 307
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.60 E-value=0.00098 Score=80.32 Aligned_cols=211 Identities=11% Similarity=-0.044 Sum_probs=123.9
Q ss_pred cceEEEEEccCCCEEEEEe-CCCeEEEEEccCC---CcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEec
Q 001190 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGS---NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~-~d~~i~vwd~~~~---~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~ 482 (1128)
..+..++|++++..|..+. ..+.|+.+++.+. ..... .+.........|++.+.+.. ++++-...+.|.+.+.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEec
Confidence 3567899999777776654 4578999998751 11111 12122234567888865554 4455556788999996
Q ss_pred CCCeEEEecC-CCCCeEEEeccCCCCccEEEEEecc-CcEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeecc
Q 001190 483 SGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1128)
Q Consensus 483 ~g~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 560 (1128)
.|..+..+.. .......+++.+.. +.++++-... +.|..++++.................|+++|++..|+.+-.
T Consensus 483 dg~~~~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~-- 559 (699)
T 1n7d_A 483 KGVKRKTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 559 (699)
T ss_dssp SSCCEEEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET--
T ss_pred CCCceEEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec--
Confidence 6665555432 22345677876532 3333333222 67877776544333332233445678999998877776643
Q ss_pred CCCceEEEEeCCCCceeeEeccc-cCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 561 DGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 561 ~~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
..+.|..+++........+... .......+++..+ ..+++....+.|..++..+++.+..+..
T Consensus 560 -~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 560 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp -TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred -CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 4778999998654333222211 1112334555443 3334444678999999988887776643
No 308
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.54 E-value=0.021 Score=59.97 Aligned_cols=205 Identities=12% Similarity=0.069 Sum_probs=125.6
Q ss_pred CCeeEEEeccCCCeEEEEe--CCeEEEEECCCceEEEE-eeC----CCC--CeeEEEE---cCCCCCEEEEEe-------
Q 001190 832 EAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTT-FMS----PPP--ASTFLAF---HPQDNNIIAIGT------- 892 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~-~~~----~~~--~v~~l~~---s~~d~~~lasg~------- 892 (1128)
....+++|.+....+..++ .++|..||...+..... +.+ ... .+..+.+ .| +++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 3345788988666666665 89999999986644333 221 111 3578999 68 688887644
Q ss_pred ------CCCcEEEEecc---cceeeeccc--ccc-----------cCeeEEEEcCCCCEEEEEcCC-CcEEEEECCCCcc
Q 001190 893 ------EDSTIHIYNVR---VDEVKSKLK--GHQ-----------KRITGLAFSTSLNILVSSGAD-AQLCVWSIDTWEK 949 (1128)
Q Consensus 893 ------~dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~l~s~~~D-g~i~iwd~~~~~~ 949 (1128)
.+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+.. .
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence 26789999999 777654332 111 247899999999999988877 77666665543 2
Q ss_pred cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-cCeEEEEecCCccc--ccccc-cCCCCCCCeEEE-EEeeCCCEEEE
Q 001190 950 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMER--IRQWT-PQDALSAPISCA-VYSCNSQLVFA 1024 (1128)
Q Consensus 950 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v~d~~~~~~--~~~~~-~~~~h~~~v~~l-~~s~dg~~l~t 1024 (1128)
.................+.|+++|||..|++.. .+.+..+|+.+... +..-. +..........+ ..-.+|+.|++
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 222222222222235578999999999888864 88999999884322 11100 100012234453 44458887554
Q ss_pred -EecCCcEEEEecCC
Q 001190 1025 -TFCDGNIGVFDADT 1038 (1128)
Q Consensus 1025 -~~~dg~i~vwd~~~ 1038 (1128)
....+.+.+.+.+.
T Consensus 251 ~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 251 GARAPYAISFRSWDN 265 (334)
T ss_dssp EEETTEEEEEECSST
T ss_pred EcCCCCEEEEECCCC
Confidence 44555555555443
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.44 E-value=0.035 Score=60.54 Aligned_cols=224 Identities=12% Similarity=0.076 Sum_probs=125.4
Q ss_pred CCeeEEEeccCCCeEEEEeCCeEEEEECCCce-EEEEee---CCCCCeeEEEEcCC---CCCEEEEEeC---C----CcE
Q 001190 832 EAVPCIALSKNDSYVMSATGGKISLFNMMTFK-VMTTFM---SPPPASTFLAFHPQ---DNNIIAIGTE---D----STI 897 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~-~~~~~~---~~~~~v~~l~~s~~---d~~~lasg~~---d----g~v 897 (1128)
.....++|.|||+++++-.+|.|++++ .+++ .+..+. ........++++|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 346789999999977766689999997 4554 222221 12346889999993 3555554432 3 567
Q ss_pred EEEecccc-------eee-eccc---ccccCeeEEEEcCCCCEEEEEcCC-------------CcEEEEECCCCc-----
Q 001190 898 HIYNVRVD-------EVK-SKLK---GHQKRITGLAFSTSLNILVSSGAD-------------AQLCVWSIDTWE----- 948 (1128)
Q Consensus 898 ~iwd~~~~-------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~~~D-------------g~i~iwd~~~~~----- 948 (1128)
..|+.... +.+ ..+. .| ....++|.|||.++++.+.. |.|.-++.+..-
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 77776543 111 1122 23 24579999999977775432 334444443210
Q ss_pred --ccceeEEeecCCCCCCCccEEEEcC-CCCEEEEEe--cC--eEEEEecCCccc------------------ccccccC
Q 001190 949 --KRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH--ET--QLAIYDASKMER------------------IRQWTPQ 1003 (1128)
Q Consensus 949 --~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~--d~--~i~v~d~~~~~~------------------~~~~~~~ 1003 (1128)
....... ++ .....++|+| +|.+.++-. +. .|.+. ..+.. +..+.
T Consensus 186 f~~~~i~a~----G~--rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~-- 255 (354)
T 3a9g_A 186 FPNSPIWSY----GH--RNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTG-- 255 (354)
T ss_dssp STTCCEEEE----CC--SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT--
T ss_pred CCCCcEEEE----cc--CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecC--
Confidence 0001100 11 3467899999 666555532 21 24333 22221 11110
Q ss_pred CCCCCCeEEEEEe-------eCCCEEEEEecCCcEEEEecCCC-ceEE--EeCCCCCCCCcccCCCCccceEEEEEecCC
Q 001190 1004 DALSAPISCAVYS-------CNSQLVFATFCDGNIGVFDADTL-RLRC--YIAPSTYLSPSVLNGSQTVYPLVVAAHPLE 1073 (1128)
Q Consensus 1004 ~~h~~~v~~l~~s-------~dg~~l~t~~~dg~i~vwd~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1073 (1128)
.. ......++|. .+|+++++....+.|...+++.. +... .+. ......+..+++.| |
T Consensus 256 ~~-~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-----------~~~~~rp~~v~~~p-D 322 (354)
T 3a9g_A 256 SE-TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-----------KNVFGRLRDVVIDD-D 322 (354)
T ss_dssp TC-CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-----------TTTSCCEEEEEECT-T
T ss_pred CC-CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-----------cCCCCCeeEEEECC-C
Confidence 11 3467788883 56777766666778888888753 3321 121 01234578899999 6
Q ss_pred CCEEEEEE
Q 001190 1074 PNQFAIGL 1081 (1128)
Q Consensus 1074 ~~~l~s~~ 1081 (1128)
+.++++..
T Consensus 323 G~lyv~~~ 330 (354)
T 3a9g_A 323 GGILISTS 330 (354)
T ss_dssp SCEEEEEC
T ss_pred CcEEEEEe
Confidence 77777664
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.37 E-value=0.021 Score=59.87 Aligned_cols=164 Identities=9% Similarity=0.031 Sum_probs=106.7
Q ss_pred EEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEE---ccCCCEEEE
Q 001190 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW---SPDGNYVGV 423 (1128)
Q Consensus 347 V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~---spdg~~las 423 (1128)
..+++|++....++++.-..++|..|+...+..... .+. ++... ......+..|.| .|+|+++++
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~~s~~---------g~~~~~~sGl~~~~~D~~grL~vv 82 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--GASSN---------GDGEQQMSGLSLLTHDNSKRLFAV 82 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--TTCCS---------SCCSEEEEEEEESSSSSCCEEEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--Ccccc---------CCCcceeeEEEEeccCCCCcEEEE
Confidence 457889886554656555789999999876543221 000 00000 011224578999 688888876
Q ss_pred Ee-------------CCCeEEEEEcc---CCCcceeceeecccc-----------cceeEEEEecCCCeEEEEEecCC-C
Q 001190 424 AF-------------TKHLIQLYSYA---GSNDLRQHSQIDAHV-----------GAVNDLAFAYPNKLLCVVTCGDD-K 475 (1128)
Q Consensus 424 ~~-------------~d~~i~vwd~~---~~~~~~~~~~~~~h~-----------~~v~~l~fs~d~~~~~l~s~s~d-~ 475 (1128)
.. .+..|..||+. +++.+... .|.... ....+++..++|+ ..++++.- +
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~~~ 159 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALGMP 159 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEESSC
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCCCC
Confidence 44 25779999999 77765432 232221 2488999999999 67778777 8
Q ss_pred eEEEEecCCCeEEEecCC------CCCeEEEeccCCCCccEEEEEeccCcEEEEecCC
Q 001190 476 LIKVWELSGRKLFNFEGH------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1128)
Q Consensus 476 ~i~vWd~~g~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 527 (1128)
.|...+.+|+.+..+... ....+.++++| +|.+|++....|.+..+|+..
T Consensus 160 ~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 160 AIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSS
T ss_pred eEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCC
Confidence 888888777655433211 12356888876 667777776699999999874
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.30 E-value=0.28 Score=52.99 Aligned_cols=263 Identities=10% Similarity=0.112 Sum_probs=154.5
Q ss_pred CCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCC
Q 001190 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1128)
Q Consensus 562 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 641 (1128)
+...|.+.|+..+..+...+-. ..+.-.+|..+.++.-. ...+.|+|+++...+....... .|.--.|-.+
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~- 116 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL- 116 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET-
T ss_pred CCCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC-
Confidence 3457889999887665433322 22455788887776654 6899999999999998887654 3555555444
Q ss_pred CEEEEEEcCCcEEEEEcccCccccccccCCccccccCcceeeeeecccccccccCCCCcceecccCCCCCcccccCCCCC
Q 001190 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIINGVDPT 721 (1128)
Q Consensus 642 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1128)
+.|+..+ +..|+-|++.....+.+.+..+..-
T Consensus 117 ~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L----------------------------------------------- 148 (494)
T 1bpo_A 117 NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL----------------------------------------------- 148 (494)
T ss_dssp TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGG-----------------------------------------------
T ss_pred CeEEEEc-CCeeEEecccCCCCchhheecchhc-----------------------------------------------
Confidence 3455444 5689999986543333333332111
Q ss_pred CCCCCCCcccCCCCCCCCcceeEEEeeCCceeEEEecCCCCCcccEEEEEEecCcceEEEeec-------cceeEeeecc
Q 001190 722 SRSMDKPRTVDDVTDKPKPWQLAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-------NGVQKLWKWH 794 (1128)
Q Consensus 722 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~lw~~~ 794 (1128)
...+|.....+++.++++..|- .|.+.+|.++
T Consensus 149 -----------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 149 -----------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp -----------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred -----------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 1123444444455554443321 3667777655
Q ss_pred ccCCCCCCceeeeeccceeccCCCccccccccCCCCCCCeeEEEeccC---CCeEEEEe----CCeEEEEECCCc-----
Q 001190 795 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN---DSYVMSAT----GGKISLFNMMTF----- 862 (1128)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---g~~la~~~----dg~i~vwd~~~~----- 862 (1128)
.... ..+.+ |......+.+..+ .++++.+. .++++|.++...
T Consensus 188 r~~s------------------------Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~ 241 (494)
T 1bpo_A 188 RKVS------------------------QPIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ 241 (494)
T ss_dssp TCCE------------------------EEECC--SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC
T ss_pred cccc------------------------chhee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC
Confidence 3211 11111 2222222221111 12333333 377999988532
Q ss_pred ---eEEEEee----CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccCeeEEEEcCCCCEEEEEcC
Q 001190 863 ---KVMTTFM----SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA 935 (1128)
Q Consensus 863 ---~~~~~~~----~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~ 935 (1128)
+....+. ...+-..++.+|+ .-.++..-+.-|.|++||+.++.++..-+-..+.|..-+......=++....
T Consensus 242 ~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr 320 (494)
T 1bpo_A 242 PFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNR 320 (494)
T ss_dssp CCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred CccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEcc
Confidence 1111111 1123356888888 7778888999999999999999998776666677776666666555666667
Q ss_pred CCcEEEEECCCCcc
Q 001190 936 DAQLCVWSIDTWEK 949 (1128)
Q Consensus 936 Dg~i~iwd~~~~~~ 949 (1128)
.|.|.--.++....
T Consensus 321 ~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 321 KGQVLSVCVEEENI 334 (494)
T ss_dssp TCEEEEEEECTTTH
T ss_pred CceEEEEEEccccc
Confidence 88777777666543
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.17 E-value=0.025 Score=60.92 Aligned_cols=203 Identities=11% Similarity=0.112 Sum_probs=122.3
Q ss_pred CeeEEEeccCCCeEEEE-------------eCCeEEEEECCC--ceE-EEEeeC-----CCCCeeEEEEcCC-CC--CEE
Q 001190 833 AVPCIALSKNDSYVMSA-------------TGGKISLFNMMT--FKV-MTTFMS-----PPPASTFLAFHPQ-DN--NII 888 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~-------------~dg~i~vwd~~~--~~~-~~~~~~-----~~~~v~~l~~s~~-d~--~~l 888 (1128)
....+++.|+|..++++ .+|.|.++|..+ ++. ...+.+ .......+.+.++ ++ +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45677788988777765 378899999873 232 112222 1234566776542 23 244
Q ss_pred EEEeC--CCcEEEEecccc----eeeeccccc-ccCeeEEEEcCCCCEEEEEcC---C------------CcEEEEECCC
Q 001190 889 AIGTE--DSTIHIYNVRVD----EVKSKLKGH-QKRITGLAFSTSLNILVSSGA---D------------AQLCVWSIDT 946 (1128)
Q Consensus 889 asg~~--dg~v~iwd~~~~----~~~~~l~~h-~~~V~~l~~s~d~~~l~s~~~---D------------g~i~iwd~~~ 946 (1128)
++-.. +.+|.+|++..+ ..+..+.+. -...+.+.+.++|.++++... | ..=.+|.++.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 567888887653 223334332 235788999999998887641 1 2234555544
Q ss_pred CcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCcccc---cccccCCCCCCCeEEEEEee-CCC
Q 001190 947 WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERI---RQWTPQDALSAPISCAVYSC-NSQ 1020 (1128)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~---~~~~~~~~h~~~v~~l~~s~-dg~ 1020 (1128)
++. ....... ...+.++|+||++.+.+++ .+.|..|++.....+ +.+.. ......+++.+ +|+
T Consensus 211 ~~~-~~~~~~l------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~----~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 211 NDV-RVVAEGF------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF----DTLVDNISVDPVTGD 279 (355)
T ss_dssp TCC-EEEEEEE------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC----SSEEEEEEECTTTCC
T ss_pred CeE-EEeecCC------cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC----CCCCceEEEeCCCCc
Confidence 432 1111111 4578899999999988875 788999998642222 22211 46678899999 599
Q ss_pred EEEEEecC-CcEEEEecC--CCceEEEeC
Q 001190 1021 LVFATFCD-GNIGVFDAD--TLRLRCYIA 1046 (1128)
Q Consensus 1021 ~l~t~~~d-g~i~vwd~~--~~~~~~~~~ 1046 (1128)
+.+++..+ +.|..|+.. .+..+.++.
T Consensus 280 lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 77766544 355555544 366666666
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.16 E-value=0.22 Score=54.12 Aligned_cols=230 Identities=16% Similarity=0.120 Sum_probs=118.6
Q ss_pred CCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCc-eecccccccccccccCccccceeccCCCcceEEEEEccC---CC
Q 001190 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GN 419 (1128)
Q Consensus 344 ~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 419 (1128)
-...+.++|.|||+ ++++ ..+|.|.+++ .+|+ .+.. + . +..........|+|+|+ +.
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~~~~~~--~------------~--v~~~g~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGKKLVAS--F------------D--VANVGEAGLLGLALHPEFPKKS 88 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCEEEEEE--C------------C--CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCceEeec--c------------c--eeecCCCceeeEEeCCCCCcCC
Confidence 45689999999998 5555 4569999887 3443 1110 0 0 11222456889999998 55
Q ss_pred EEEEEeC----C----CeEEEEEccCCC-cc---eec-eeec-ccccceeEEEEecCCCeEEEEEecC------------
Q 001190 420 YVGVAFT----K----HLIQLYSYAGSN-DL---RQH-SQID-AHVGAVNDLAFAYPNKLLCVVTCGD------------ 473 (1128)
Q Consensus 420 ~las~~~----d----~~i~vwd~~~~~-~~---~~~-~~~~-~h~~~v~~l~fs~d~~~~~l~s~s~------------ 473 (1128)
.|..+.. + +.|..|+...+. .+ +.+ ..+. +.......++|.|||. +.++.+.
T Consensus 89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~ 166 (354)
T 3a9g_A 89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSS 166 (354)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTC
T ss_pred EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCC
Confidence 5544432 3 567778776541 11 111 0121 1112346799999997 4444332
Q ss_pred -CCeEEEEecCCC----------eEEEecCCCCCeEEEeccCCCCccEEEEEeccC---cEEEEecCCCC----------
Q 001190 474 -DKLIKVWELSGR----------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMG---------- 529 (1128)
Q Consensus 474 -d~~i~vWd~~g~----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~---------- 529 (1128)
.+.|.-.+.+|+ .+. -.++.. ...++|++. ++.++++-...+ .|.+- ..+.
T Consensus 167 ~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~ 241 (354)
T 3a9g_A 167 LAGKILRVDEEGRPPADNPFPNSPIW-SYGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGK 241 (354)
T ss_dssp CSSEEEEECTTSCCCTTSSSTTCCEE-EECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSC
T ss_pred CCeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCC
Confidence 245655665554 122 223433 456778653 334443322211 12222 2111
Q ss_pred --------ceeeecCCCCeEEEEEEc-------CCCCeEEEeeeccCCCceEEEEeCCCC-cee--eEeccccCCceeEE
Q 001190 530 --------SRVDYDAPGHWCTTMLYS-------ADGSRLFSCGTSKDGDSFLVEWNESEG-TIK--RTYAGFRKKSNGVV 591 (1128)
Q Consensus 530 --------~~~~~~~~~~~i~~~~~s-------~~g~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~~~~~~~~v~~~ 591 (1128)
....+.........++|. .+|.++++.. ..+.|...++... +.. ..+.......+..+
T Consensus 242 ~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v 317 (354)
T 3a9g_A 242 AGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDV 317 (354)
T ss_dssp CCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEE
T ss_pred CCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEE
Confidence 111221223457788884 4565555443 3567877777653 222 22221112356778
Q ss_pred EEeCCCCEEEEE
Q 001190 592 QFDTTQNHFLAV 603 (1128)
Q Consensus 592 ~~~~~~~~l~~~ 603 (1128)
++.|||...++.
T Consensus 318 ~~~pDG~lyv~~ 329 (354)
T 3a9g_A 318 VIDDDGGILIST 329 (354)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCcEEEEE
Confidence 888888655554
No 314
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.14 E-value=0.057 Score=58.90 Aligned_cols=229 Identities=13% Similarity=0.039 Sum_probs=114.1
Q ss_pred cceEEEEEccCCCEEEEEeCCCeEEEEEccCCCcceecee---ecccccceeEEEEecC---CCeEEEEEecCC-----C
Q 001190 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ---IDAHVGAVNDLAFAYP---NKLLCVVTCGDD-----K 475 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~---~~~h~~~v~~l~fs~d---~~~~~l~s~s~d-----~ 475 (1128)
.....++|.|||++++ +..+|.|.+++ .++. ..+.. +.........++|+|| +.. +.++.... +
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence 3567999999998555 45679999988 4431 11111 1122456889999998 553 23333322 5
Q ss_pred eEEEEe-cCCC-----eE-EEec---CCCCCeEEEeccCCCCccEEEEEec-------------cCcEEEEecCCC----
Q 001190 476 LIKVWE-LSGR-----KL-FNFE---GHEAPVYSICPHHKENIQFIFSTAI-------------DGKIKAWLYDTM---- 528 (1128)
Q Consensus 476 ~i~vWd-~~g~-----~~-~~~~---~h~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~~wd~~~~---- 528 (1128)
.|..++ ..+. .+ ..+. +.......++|.+ +|.+.++.+. .|.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP--DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT--TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC--CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 677788 4331 11 1132 1111235677765 6655555432 145555554320
Q ss_pred --------CceeeecCCCCeEEEEEEcC-CCCeEEEeeeccCC-----CceEEEEeCCC--------C--------ceee
Q 001190 529 --------GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDG-----DSFLVEWNESE--------G--------TIKR 578 (1128)
Q Consensus 529 --------~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~~~-----~~~i~~wd~~~--------~--------~~~~ 578 (1128)
.....+.........++|+| +|++.++-. ..+. ...|.+..... + .++.
T Consensus 184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 01111111223467889999 555444432 1111 01233322111 0 1122
Q ss_pred EeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee------eEEEecCCCCCCcceEEEcCCCCEEEEEE
Q 001190 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI------LTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1128)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 648 (1128)
.+..+. ....++| .++..+++.-..+.|...+++.... ...+. .....+..+++.|||.++++..
T Consensus 263 ~~~~~~--ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQGF--PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTTCC--CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCCC--CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence 221111 2345666 3555555544666777777654321 11221 1123678999999997766654
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.11 E-value=0.06 Score=58.67 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=126.7
Q ss_pred CeeEEEeccCCC-eEEEEeCCeEEEEECCCceEEEEee-------CCCCCeeEEEEcCC---CCCEEEEEeC-------C
Q 001190 833 AVPCIALSKNDS-YVMSATGGKISLFNMMTFKVMTTFM-------SPPPASTFLAFHPQ---DNNIIAIGTE-------D 894 (1128)
Q Consensus 833 ~v~~~~~s~dg~-~la~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~l~~s~~---d~~~lasg~~-------d 894 (1128)
....++|.|||+ ++++-..|.|++++.. ++....+. ........++++|+ ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 6665558999999854 33221111 12345688999993 3555554332 2
Q ss_pred CcEEEEecccc-------ee-eeccc-----ccccCeeEEEEcCCCCEEEEEcCC-------------CcEEEEECCCCc
Q 001190 895 STIHIYNVRVD-------EV-KSKLK-----GHQKRITGLAFSTSLNILVSSGAD-------------AQLCVWSIDTWE 948 (1128)
Q Consensus 895 g~v~iwd~~~~-------~~-~~~l~-----~h~~~V~~l~~s~d~~~l~s~~~D-------------g~i~iwd~~~~~ 948 (1128)
..|..|++..+ +. +..+. .|. ...++|.|||.++++.+.. |.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 11 11221 132 3579999999777765432 345555554320
Q ss_pred ------------ccceeEEeecCCCCCCCccEEEEcC-CCCEEEEEe--cCeEEEEecCCccccc---------------
Q 001190 949 ------------KRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH--ETQLAIYDASKMERIR--------------- 998 (1128)
Q Consensus 949 ------------~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~--d~~i~v~d~~~~~~~~--------------- 998 (1128)
....... ++ .....++|+| +|.+.++-. ++.=.|.-+..+....
T Consensus 176 p~~npf~~~~~~~~~i~a~----G~--rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSY----GI--RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEE----CC--SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEEEE----cC--cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 0111111 11 3467899999 565555422 2222333333222100
Q ss_pred ---------ccccCC---CCCCCeEEEEEee-------CCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCC
Q 001190 999 ---------QWTPQD---ALSAPISCAVYSC-------NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGS 1059 (1128)
Q Consensus 999 ---------~~~~~~---~h~~~v~~l~~s~-------dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1128)
.+.... .+......++|.. +|+++++....+.|...+++.++....... . ..
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~------~~ 320 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI---L------TD 320 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE---S------GG
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc---c------cC
Confidence 000000 1123567778864 466777666778888888876644332210 0 01
Q ss_pred CccceEEEEEecCCCCEEEEEE-CCCcEEEEcC
Q 001190 1060 QTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEP 1091 (1128)
Q Consensus 1060 ~~~~~~~~~~~p~~~~~l~s~~-~dg~i~iWd~ 1091 (1128)
....+..+++.| |+.++++.. .+| +||.+
T Consensus 321 ~~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 321 RGQRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp GCCCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CCCceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 123678999999 687766543 344 45544
No 316
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.05 E-value=0.038 Score=59.67 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=82.0
Q ss_pred EEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCC----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceee----
Q 001190 837 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP----PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK---- 908 (1128)
Q Consensus 837 ~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~---- 908 (1128)
.....+|..++.+.++.||.-++......+.+... -..|..+..+| +|++||..+ +..|.|-.+..+...
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence 45567899999999999999998755455555543 23688999999 999999876 668999888743211
Q ss_pred --------ecccc------cccCeeEEEEcCC---CCEEEEEcCCCcEEEEECCCCc
Q 001190 909 --------SKLKG------HQKRITGLAFSTS---LNILVSSGADAQLCVWSIDTWE 948 (1128)
Q Consensus 909 --------~~l~~------h~~~V~~l~~s~d---~~~l~s~~~Dg~i~iwd~~~~~ 948 (1128)
+.+.- ...+|..+.|+|- +..|++-..|++|++||+....
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~ 160 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ 160 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence 11111 2467999999996 4589999999999999998743
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.04 E-value=0.024 Score=60.66 Aligned_cols=233 Identities=12% Similarity=0.073 Sum_probs=122.1
Q ss_pred CeEEEEe---CCeEEEEECCCceEEEEeeCCCCCe-eEEEEcCCCCCEEEEEeCC----CcEEEEeccccee--eecccc
Q 001190 844 SYVMSAT---GGKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTED----STIHIYNVRVDEV--KSKLKG 913 (1128)
Q Consensus 844 ~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~--~~~l~~ 913 (1128)
.+++.|+ ...+.+||..+.+-...-....... .+++. - ++++++.|+.+ ..+.+||..+++- +..+..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 3445554 2569999998865432211111111 12222 2 67788888765 6788999887642 222222
Q ss_pred cccCeeEEEEcCCCCEEEEEcCC------CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-----
Q 001190 914 HQKRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----- 982 (1128)
Q Consensus 914 h~~~V~~l~~s~d~~~l~s~~~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----- 982 (1128)
....-..+.+ ++++++.|+.+ ..+.+||..+.+-.. ..... ....-..++. -+++.++.+.
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~---~~~~p--~~r~~~~~~~-~~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT---KPSML--TQRCSHGMVE-ANGLIYVCGGSLGNN 162 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE---ECCCS--SCCBSCEEEE-ETTEEEEECCEESCT
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe---CCCCc--CCcceeEEEE-ECCEEEEECCCCCCC
Confidence 1112222222 67777888765 458899988754221 11111 1111122222 3556666542
Q ss_pred -----cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCceEEEeCCCCCCC
Q 001190 983 -----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLS 1052 (1128)
Q Consensus 983 -----d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~ 1052 (1128)
-..+.+||..+..-...-... .......+..-++++++.|+.+ ..+.+||+.+.+-... .. ++
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~p 235 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMI---EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-SP---MP 235 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCS---SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-CC---CS
T ss_pred CcccccceEEEeCCCCCeEEECCCcc---chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-CC---CC
Confidence 245889998876533221111 1111112222377777777654 4689999988764332 21 11
Q ss_pred CcccCCCCccceEEEEEecCCCCEEEEEECC-----CcEEEEcCCCCCCCcccCCCC
Q 001190 1053 PSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGVSPPV 1104 (1128)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-----g~i~iWd~~~~~~~w~~~~p~ 1104 (1128)
.... .+ .++.+ ++.+++.|+.+ ..+.+||+.+.+ |...++.
T Consensus 236 ~~r~--~~----~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~ 281 (306)
T 3ii7_A 236 WKGV--TV----KCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDK--WVANSKV 281 (306)
T ss_dssp CCBS--CC----EEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTE--EEEEEEE
T ss_pred CCcc--ce----eEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEeCCCc
Confidence 1110 11 12222 46788888855 457888888755 9886443
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.01 E-value=0.037 Score=59.01 Aligned_cols=235 Identities=13% Similarity=0.082 Sum_probs=122.3
Q ss_pred CCCeEEEEe-C------CeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCC-----CcEEEEecccce---
Q 001190 842 NDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-----STIHIYNVRVDE--- 906 (1128)
Q Consensus 842 dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~--- 906 (1128)
++.+++.|+ . ..+.+||..+.+-...-..........+... ++++++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 445555554 1 3588999887654322111111111122223 67788888865 468999988754
Q ss_pred --eeecccccccCeeEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEE
Q 001190 907 --VKSKLKGHQKRITGLAFSTSLNILVSSGAD-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 979 (1128)
Q Consensus 907 --~~~~l~~h~~~V~~l~~s~d~~~l~s~~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 979 (1128)
.+..+......-..+.+ ++++++.|+.+ ..+.+||..+.+-... ...... .....++. -+++.++
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~--r~~~~~~~-~~~~iyv 164 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSML---GDMQTA--REGAGLVV-ASGVIYC 164 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE---EECSSC--CBSCEEEE-ETTEEEE
T ss_pred eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEEC---CCCCCC--cccceEEE-ECCEEEE
Confidence 23222222122222222 67777777754 3588899887543222 111111 11122222 2566666
Q ss_pred EEe------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCceEEEeCCC
Q 001190 980 VVH------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPS 1048 (1128)
Q Consensus 980 ~~~------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~ 1048 (1128)
.|. -..+.+||..+..-...-... .......+...++++++.|+.+ ..+.+||+++.+-...-.
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-- 239 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMA---TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS-- 239 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCS---SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC--
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCC---cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC--
Confidence 643 246889998876543321111 1111112223377777777764 469999999876543321
Q ss_pred CCCCCcccCCCCccceEEEEEecCCCCEEEEEECC-----CcEEEEcCCCCCCCcccCCC
Q 001190 1049 TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGVSPP 1103 (1128)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-----g~i~iWd~~~~~~~w~~~~p 1103 (1128)
++.... .| ..+.. ++.+++.|+.+ ..+.+||+.+.+ |...++
T Consensus 240 --~p~~r~--~~----~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~ 286 (301)
T 2vpj_A 240 --MTTPRC--YV----GATVL---RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEVVTS 286 (301)
T ss_dssp --CSSCCB--SC----EEEEE---TTEEEEECCBCSSSBEEEEEEEETTTTE--EEEEEE
T ss_pred --CCCccc--ce----eEEEE---CCEEEEEcCcCCCcccccEEEEcCCCCe--EEEcCC
Confidence 111111 11 12222 46788888766 357788888754 877543
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.96 E-value=0.063 Score=57.21 Aligned_cols=233 Identities=15% Similarity=0.141 Sum_probs=120.4
Q ss_pred CCCeEEEEe-C----CeEEEEECCCceEEEEeeCCCCCe-eEEEEcCCCCCEEEEEeCCC-----cEEEEeccccee--e
Q 001190 842 NDSYVMSAT-G----GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDEV--K 908 (1128)
Q Consensus 842 dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~--~ 908 (1128)
++.+++.|+ + ..+.+||..+.+-...-....... .+++. - ++++++.|+.++ .+.+||..+.+- +
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 344555554 2 358899988765433211111111 12222 2 677888887553 588899876642 2
Q ss_pred ecccccccCeeEEEEcCCCCEEEEEcCCC-----cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-
Q 001190 909 SKLKGHQKRITGLAFSTSLNILVSSGADA-----QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 982 (1128)
Q Consensus 909 ~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 982 (1128)
..+......-..+.+ ++++++.|+.++ .+.+||+.+.+-.. +..... ......++. -+++.++.|.
T Consensus 93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~--~r~~~~~~~-~~~~iyv~GG~ 164 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH---VAPMNT--RRSSVGVGV-VGGLLYAVGGY 164 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE---ECCCSS--CCBSCEEEE-ETTEEEEECCE
T ss_pred CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee---cCCCCC--cccCceEEE-ECCEEEEEeCC
Confidence 222221112222222 667777787653 47788887754221 111111 111122222 2556555542
Q ss_pred -------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCceEEEeCCCCC
Q 001190 983 -------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTY 1050 (1128)
Q Consensus 983 -------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~ 1050 (1128)
-..+.+||..+..-...-..... .... ++ ..-++++++.|+.+ ..+.+||+++++-... ...
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~-- 238 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTR-RSGA-GV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV-ADM-- 238 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSC-CBSC-EE-EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEE-CCC--
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccc-cccc-cE-EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeC-CCC--
Confidence 23588999887654322111111 1111 22 23377877777764 3699999988764432 211
Q ss_pred CCCcccCCCCccceEEEEEecCCCCEEEEEECCC-----cEEEEcCCCCCCCcccCC
Q 001190 1051 LSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG-----SVKVMEPSESEGKWGVSP 1102 (1128)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg-----~i~iWd~~~~~~~w~~~~ 1102 (1128)
+.... .+ ..+.. ++.+++.|+.++ .+.+||+.+.+ |...+
T Consensus 239 -~~~r~--~~----~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 283 (302)
T 2xn4_A 239 -NMCRR--NA----GVCAV---NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTVVS 283 (302)
T ss_dssp -SSCCB--SC----EEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE--EEECS
T ss_pred -CCccc--cC----eEEEE---CCEEEEECCcCCCcccccEEEEcCCCCe--EEECC
Confidence 11110 11 11222 467888888664 48899998865 98765
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.91 E-value=0.51 Score=50.48 Aligned_cols=231 Identities=13% Similarity=0.076 Sum_probs=122.7
Q ss_pred CCeeEEEeccCCCeEEEEe-CCeEEEEECCCceEE--EEe----eCCCCCeeEEEEcCC---CCCEEEEEe--CCCcEEE
Q 001190 832 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM--TTF----MSPPPASTFLAFHPQ---DNNIIAIGT--EDSTIHI 899 (1128)
Q Consensus 832 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~--~~~----~~~~~~v~~l~~s~~---d~~~lasg~--~dg~v~i 899 (1128)
.....++|.|||+++++-. .|.|++++..+++.. ..+ .........++++|+ ++.+.++-+ .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 4577999999999888887 799999987665542 222 123456789999983 354444322 3455666
Q ss_pred Eecccc----------eee-eccc---ccccCeeEEEEcCCCCEEEEEcC-------------CCcEEEEECCCCcccc-
Q 001190 900 YNVRVD----------EVK-SKLK---GHQKRITGLAFSTSLNILVSSGA-------------DAQLCVWSIDTWEKRK- 951 (1128)
Q Consensus 900 wd~~~~----------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~~~-------------Dg~i~iwd~~~~~~~~- 951 (1128)
|.+..+ +.+ ..+. .| ....|+|.|||.++++.+. .|.|.-.+.+. +...
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG-~ip~~ 188 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG-EPAPG 188 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS-SBCTT
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC-CccCC
Confidence 665542 111 1121 23 2457999999998887653 23333333332 1000
Q ss_pred ----eeEEeecCCCCCCCccEEEEcCCCCEEEEE--ecCeEEEEecCCcccc------------------cccccCCCCC
Q 001190 952 ----SVTIHIPAGKTPTGDTRVQFNADQVRMLVV--HETQLAIYDASKMERI------------------RQWTPQDALS 1007 (1128)
Q Consensus 952 ----~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~--~d~~i~v~d~~~~~~~------------------~~~~~~~~h~ 1007 (1128)
...+. ..++ .....++|+|+|.+.++- .++.-.|.-+..+... ..+.. +.
T Consensus 189 nPf~~~~i~-a~G~--RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~---~~ 262 (347)
T 3das_A 189 NPFPGSPVY-SYGH--RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST---DE 262 (347)
T ss_dssp CSSTTCCEE-EBCC--SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT---TT
T ss_pred CCCCCCeEE-eeCC--CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC---CC
Confidence 00000 0111 346789999998877663 2333334444433321 00100 01
Q ss_pred CCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEE
Q 001190 1008 APISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL 1081 (1128)
Q Consensus 1008 ~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~ 1081 (1128)
.....++|. +|.++...-..+.|....++.+.... . ....+ ......+..|+..| |+.++++..
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~--~-----~e~~l-~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAA--D-----PQAFL-EGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESS--C-----CEEES-TTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceec--c-----eEEee-cCCCCCccEEEECC-CCcEEEEEc
Confidence 345677775 46555555555666666665443210 0 00000 12234678888888 576666544
No 321
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.85 E-value=0.7 Score=49.64 Aligned_cols=200 Identities=13% Similarity=0.090 Sum_probs=113.4
Q ss_pred cceEEEEEccCCCEEEEEe------------CCCeEEEEEccCCC-cceeceeecc-----cccceeEEEEec--CCCeE
Q 001190 407 ISVSRVAWSPDGNYVGVAF------------TKHLIQLYSYAGSN-DLRQHSQIDA-----HVGAVNDLAFAY--PNKLL 466 (1128)
Q Consensus 407 ~~V~~l~~spdg~~las~~------------~d~~i~vwd~~~~~-~~~~~~~~~~-----h~~~v~~l~fs~--d~~~~ 466 (1128)
...-.++..|+|..+++++ .+|.|.++|.++.. ..+.+ .+.+ .......+.+.+ +|...
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3455677889887666652 68999999998432 12222 2323 234677788766 45432
Q ss_pred EEEEecC--CCeEEEEe--cCCCeE---EEecCC-CCCeEEEeccCCCCccEEEEEec---c------------CcEEEE
Q 001190 467 CVVTCGD--DKLIKVWE--LSGRKL---FNFEGH-EAPVYSICPHHKENIQFIFSTAI---D------------GKIKAW 523 (1128)
Q Consensus 467 ~l~s~s~--d~~i~vWd--~~g~~~---~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~---d------------g~i~~w 523 (1128)
++++-.. +.+|.+|+ ..+... ..+.+. -...+.+++.+ +|.+.++... | ..=++|
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 3343333 56888888 333332 333332 23467787754 5666665431 1 122334
Q ss_pred ecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCC-Cce--eeEeccccCCceeEEEEeC-CCCE
Q 001190 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQNH 599 (1128)
Q Consensus 524 d~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~ 599 (1128)
.++..+.. .+...-...+.++||||++.++.+.. ..+.|+.|++.. ++. .+.+. .......+++.+ +|+.
T Consensus 207 r~d~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 207 YYSPNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDL 280 (355)
T ss_dssp EECTTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCE
T ss_pred EEECCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcE
Confidence 33333222 22222345789999999998887764 467899999863 332 22332 123566788998 5887
Q ss_pred EEEEECC-CcEEEEECC
Q 001190 600 FLAVGED-SQIKFWDMD 615 (1128)
Q Consensus 600 l~~~s~d-g~i~iwd~~ 615 (1128)
.+++..+ +.|..|+..
T Consensus 281 wva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEESCHHHHHSCCTT
T ss_pred EEEecCCceEEEEECCC
Confidence 7766543 344445443
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.70 E-value=0.13 Score=54.66 Aligned_cols=192 Identities=9% Similarity=-0.043 Sum_probs=94.0
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCC---cceeceeecccccceeEEEEecCCCeEEEEEecCC-----CeEEEEe-c
Q 001190 417 DGNYVGVAFTK-----HLIQLYSYAGSN---DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-L 482 (1128)
Q Consensus 417 dg~~las~~~d-----~~i~vwd~~~~~---~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d-----~~i~vWd-~ 482 (1128)
+++.++.|+.+ ..+.+||..+++ -.. ...+......- +++. .+++ +++.|+.+ ..+.++| .
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-VAPMNVRRGLA-GATT-LGDM--IYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-ECCCSSCCBSC-EEEE-ETTE--EEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE-CCCCCCCccce-eEEE-ECCE--EEEEcccCCCcccceEEEEcCC
Confidence 67777777754 358999988865 221 11121111111 1222 2555 56666543 3688888 4
Q ss_pred CCCeE--EEecCCCCCeEEEeccCCCCccEEEEEecc-----CcEEEEecCCCCceeeecCCCC--eEEEEEEcCCCCeE
Q 001190 483 SGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRL 553 (1128)
Q Consensus 483 ~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l 553 (1128)
+++-. ..+......-.++.+ ++.+++.|+.+ ..+.+||+.+..=...-..... ....+. -+++.+
T Consensus 137 ~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~ 210 (301)
T 2vpj_A 137 IDQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIY 210 (301)
T ss_dssp TTEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEE
T ss_pred CCeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEE
Confidence 44322 222111111122222 45677777655 4577788765432221111111 112222 256666
Q ss_pred EEeeeccCC-CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC-----CcEEEEECCCCeee
Q 001190 554 FSCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNIL 620 (1128)
Q Consensus 554 ~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~ 620 (1128)
+.++.+... ...+.+||..+.+-...-..... .....+..-++..++.|+.+ ..+.+||.++.+..
T Consensus 211 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 211 VVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP-RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EECCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred EEeCCCCCcccceEEEEeCCCCcEEECCCCCCc-ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 666643221 35689999987764332221111 11112222255666666654 45778888776543
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.68 E-value=0.18 Score=53.93 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=116.8
Q ss_pred eCCeEEEEECCCceEEE-EeeCCCCCeeEEEEcCCCCCEEEEEeC----C-------CcEEEEeccccee--eecccccc
Q 001190 850 TGGKISLFNMMTFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGTE----D-------STIHIYNVRVDEV--KSKLKGHQ 915 (1128)
Q Consensus 850 ~dg~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~lasg~~----d-------g~v~iwd~~~~~~--~~~l~~h~ 915 (1128)
++..+.+||..+.+-.. .+..........+... ++++++.|+. + ..+.+||..+++- +..+....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 33679999998877433 2222223333334444 7788888873 1 1277888877642 22222111
Q ss_pred cCeeEEEEcCCCCEEEEEcCC--------CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEec----
Q 001190 916 KRITGLAFSTSLNILVSSGAD--------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE---- 983 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d---- 983 (1128)
..-..+.+ ++++++.|+.+ ..+.+||..+.+-.. .... .....-..++. -+++.++.|..
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~---~~~~--p~~r~~~~~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE---SDPL--PYVVYGHTVLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE---CCCC--SSCCBSCEEEE-ETTEEEEECCBCTTS
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE---CCCC--CCcccceeEEE-ECCEEEEEeCCCCCC
Confidence 11122222 56777777742 458899988754211 1111 11111122222 45555555431
Q ss_pred ---CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCC-----cEEEEecCCCceEEEeCCCCCCCCcc
Q 001190 984 ---TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG-----NIGVFDADTLRLRCYIAPSTYLSPSV 1055 (1128)
Q Consensus 984 ---~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 1055 (1128)
..+.+||..+.+-...-... .......+..-++++++.|+.++ .+.+||+.+.+-... .. ++...
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~p~~r 234 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQ---TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF-EA---FPQER 234 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCS---SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE-CC---CSSCC
T ss_pred cccceEEEEeCCCCeEEECCCCC---CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEEC-CC---CCCcc
Confidence 46899998876432221111 11111122233778778887654 588999988754433 21 11111
Q ss_pred cCCCCccceEEEEEecCCCCEEEEEECCC--------------cEEEEcCCCCCCCcccC
Q 001190 1056 LNGSQTVYPLVVAAHPLEPNQFAIGLTDG--------------SVKVMEPSESEGKWGVS 1101 (1128)
Q Consensus 1056 ~~~~~~~~~~~~~~~p~~~~~l~s~~~dg--------------~i~iWd~~~~~~~w~~~ 1101 (1128)
. .| ..+.+ ++.+++.|+.++ .+.++|+.+.+ |...
T Consensus 235 ~--~~----~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~ 283 (315)
T 4asc_A 235 S--SL----SLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEGV 283 (315)
T ss_dssp B--SC----EEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEEE
T ss_pred c--ce----eEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhhh
Confidence 1 11 12222 467888888643 36677777754 9876
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.66 E-value=0.5 Score=53.18 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=62.4
Q ss_pred CeeEEEeccCCCeEEEEeC-CeEEEEECCCceEE--EEeeC------CCCCeeEEEEcCC---CCCEEEEEeC-------
Q 001190 833 AVPCIALSKNDSYVMSATG-GKISLFNMMTFKVM--TTFMS------PPPASTFLAFHPQ---DNNIIAIGTE------- 893 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~d-g~i~vwd~~~~~~~--~~~~~------~~~~v~~l~~s~~---d~~~lasg~~------- 893 (1128)
....++|.|||+++++-.. +.|++++..+++.. ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4679999999998887765 47988887655432 22221 2345779999994 4544444432
Q ss_pred -----CCcEEEEecccc-------eeee-cccc-cccCeeEEEEcCCCCEEEEEcC
Q 001190 894 -----DSTIHIYNVRVD-------EVKS-KLKG-HQKRITGLAFSTSLNILVSSGA 935 (1128)
Q Consensus 894 -----dg~v~iwd~~~~-------~~~~-~l~~-h~~~V~~l~~s~d~~~l~s~~~ 935 (1128)
...|.-|++..+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555555321 1111 1221 1123678999999998887653
No 325
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.63 E-value=0.6 Score=50.64 Aligned_cols=235 Identities=9% Similarity=0.085 Sum_probs=115.5
Q ss_pred CcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC---CCEE
Q 001190 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNYV 421 (1128)
Q Consensus 345 ~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l 421 (1128)
...+.++|.|||+++++ +...|.|.+++.. ++... .+. + . . .+..........++|+|| +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~~--~-----~--~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PLS--G-----V--P-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CCB--S-----C--C-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Eec--C-----C--c-ccccCCCCCceeEEECCCCCCCCEE
Confidence 35789999999984444 3467899988853 32210 000 0 0 0 012223456789999996 4544
Q ss_pred EEEe-C-------CCeEEEEEccCCC-cc---eece-eec---ccccceeEEEEecCCCeEEEEEecC------------
Q 001190 422 GVAF-T-------KHLIQLYSYAGSN-DL---RQHS-QID---AHVGAVNDLAFAYPNKLLCVVTCGD------------ 473 (1128)
Q Consensus 422 as~~-~-------d~~i~vwd~~~~~-~~---~~~~-~~~---~h~~~v~~l~fs~d~~~~~l~s~s~------------ 473 (1128)
..+. . ...|..|++..+. .+ +.+. .+. .....-..++|.|||. +++..|..
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~ 162 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKL 162 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSC
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCC
Confidence 4442 2 2356667665431 11 1110 111 1111236799999996 24444332
Q ss_pred CCeEEEEecCCCe-------------EEEe-cCCCCCeEEEeccCCCCccEEEEEecc--CcEEEEecCCCCc-------
Q 001190 474 DKLIKVWELSGRK-------------LFNF-EGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDTMGS------- 530 (1128)
Q Consensus 474 d~~i~vWd~~g~~-------------~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d--g~i~~wd~~~~~~------- 530 (1128)
.+.|.-.+.+|.. ...+ .+|. ....++|.+. ++ .|+++... +.=.+.-+..+..
T Consensus 163 ~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~-~g-~l~~~d~g~~~~dei~~i~~G~nyGwp~~~ 239 (353)
T 2g8s_A 163 QGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPW-SN-ALWLNEHGPRGGDEINIPQKGKNYGWPLAT 239 (353)
T ss_dssp TTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETT-TT-EEEEEEECSBSCEEEECCCTTCBCCTTTBC
T ss_pred CeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECC-CC-CEEEEecCCCCCcEEeEeccCCcCCCCCcc
Confidence 2456666655531 1111 2333 3567788663 33 44444322 1112222211110
Q ss_pred ------------------------eeeecCCCCeEEEEEEcC-------CCCeEEEeeeccCCCceEEEEeCCCCceeeE
Q 001190 531 ------------------------RVDYDAPGHWCTTMLYSA-------DGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1128)
Q Consensus 531 ------------------------~~~~~~~~~~i~~~~~s~-------~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 579 (1128)
...+. +...+..++|.. +|.++++.. ..+.|...++..++....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~----~~~~v~~~~~~~~~~~~~ 314 (353)
T 2g8s_A 240 WGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGAL----KDKDVIVMSVNGDKVTED 314 (353)
T ss_dssp SSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEET----TTTEEEEEEEETTEEEEE
T ss_pred CCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEc----cCCEEEEEEeCCCeEeee
Confidence 00111 123466777764 355555443 366777777765543322
Q ss_pred --eccccCCceeEEEEeCCCCEEEE
Q 001190 580 --YAGFRKKSNGVVQFDTTQNHFLA 602 (1128)
Q Consensus 580 --~~~~~~~~v~~~~~~~~~~~l~~ 602 (1128)
+.......+..+++.|+|...++
T Consensus 315 ~~~~~~~~~rp~~v~~~pdG~lyv~ 339 (353)
T 2g8s_A 315 GRILTDRGQRIRDVRTGPDGYLYVL 339 (353)
T ss_dssp EEESGGGCCCEEEEEECTTSCEEEE
T ss_pred EEcccCCCCceeEEEECCCCcEEEE
Confidence 21111225677888898875554
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.56 E-value=0.088 Score=56.22 Aligned_cols=238 Identities=13% Similarity=0.082 Sum_probs=122.7
Q ss_pred eccCCCeEEEEe-C----CeEEEEECCCceEEEEeeCCCCCe-eEEEEcCCCCCEEEEEeC----C-----CcEEEEecc
Q 001190 839 LSKNDSYVMSAT-G----GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTE----D-----STIHIYNVR 903 (1128)
Q Consensus 839 ~s~dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~d~~~lasg~~----d-----g~v~iwd~~ 903 (1128)
..-++.+++.|+ + ..+.+||..+.+-...-....... .+++. . ++++++.|+. + ..+.+||..
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 334666777665 2 458999998776433211111111 12222 2 6778888776 2 468889987
Q ss_pred ccee--eecccccccCeeEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCC
Q 001190 904 VDEV--KSKLKGHQKRITGLAFSTSLNILVSSGAD-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 904 ~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
+.+- +..+......-..+.+ ++++++.|+.+ ..+.+||..+.+-..... .. ....-..++.. +++
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~p--~~r~~~~~~~~-~~~ 170 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP---ML--TRRIGVGVAVL-NRL 170 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC---CS--SCCBSCEEEEE-TTE
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC---CC--ccccceEEEEE-CCE
Confidence 7642 2222211112222222 67777777644 358889988754221111 11 11111222222 566
Q ss_pred EEEEEe------cCeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCceEEEe
Q 001190 977 RMLVVH------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 977 ~l~~~~------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~ 1045 (1128)
.++.|. -..+.+||..+..-...-..... ...-..+. -++++++.|+.+ ..+.+||+.+.+-.. +
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~ 246 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTF-V 246 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE-C
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEE-C
Confidence 666543 24688999887654322111110 11112222 377777777754 569999998875433 2
Q ss_pred CCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC-----CcEEEEcCCCCCCCcccCCCC
Q 001190 1046 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGVSPPV 1104 (1128)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d-----g~i~iWd~~~~~~~w~~~~p~ 1104 (1128)
.. ++.... .+ ..+.. ++.+++.|+.+ ..+.+||+.+.+ |...++.
T Consensus 247 ~~---~p~~r~--~~----~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~ 296 (308)
T 1zgk_A 247 AP---MKHRRS--AL----GITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSEVTRM 296 (308)
T ss_dssp CC---CSSCCB--SC----EEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEEC
T ss_pred CC---CCCCcc--ce----EEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE--EeecCCC
Confidence 21 111111 11 11222 46788888754 357788888754 9876443
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.52 E-value=0.16 Score=63.31 Aligned_cols=202 Identities=14% Similarity=0.171 Sum_probs=127.7
Q ss_pred eeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc-ceeeeccc
Q 001190 834 VPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKSKLK 912 (1128)
Q Consensus 834 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~ 912 (1128)
..+.-++|..+.+|.-.+..+.|||+++...+..+.- ...|.--.|-. .+.|+..+ +..|+-|++.. ..+.+.+.
T Consensus 68 AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred chhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 3456678888888887788899999998877766653 33566666654 34555554 67899999974 35555565
Q ss_pred cc----ccCeeEEEEcCCCCEEEEEcC-------CCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEc--C-CCCEE
Q 001190 913 GH----QKRITGLAFSTSLNILVSSGA-------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN--A-DQVRM 978 (1128)
Q Consensus 913 ~h----~~~V~~l~~s~d~~~l~s~~~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~-d~~~l 978 (1128)
-| ...|..-..+++.++++..|- .|.+.+|.++.+.. +...+|. .....+... + ....+
T Consensus 144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s------Q~iegha-~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------QPIEGHA-ASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc------hhhhHhH-hhhheeccCCCCCCceEE
Confidence 55 456778888999998886543 47788998876542 1122222 111111111 1 12223
Q ss_pred EEEe----cCeEEEEecCCc---cc------ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEe
Q 001190 979 LVVH----ETQLAIYDASKM---ER------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 979 ~~~~----d~~i~v~d~~~~---~~------~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1045 (1128)
+.+. .+.+.|-++... .. +..+.+++.-..-..++..|+.-..++.-+.-|.|++||++||..+..-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 3222 368888888543 11 1112222222333457778888788888889999999999999987765
Q ss_pred C
Q 001190 1046 A 1046 (1128)
Q Consensus 1046 ~ 1046 (1128)
+
T Consensus 297 r 297 (1630)
T 1xi4_A 297 R 297 (1630)
T ss_pred c
Confidence 5
No 328
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.50 E-value=0.23 Score=52.77 Aligned_cols=229 Identities=6% Similarity=-0.033 Sum_probs=112.0
Q ss_pred CEEEEEeC--CCeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC----CeEEEEe-cCCCeEE--E
Q 001190 419 NYVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLF--N 489 (1128)
Q Consensus 419 ~~las~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d----~~i~vWd-~~g~~~~--~ 489 (1128)
..++.|+. ...+.+||..+++-.. ...+......- .+..-++. +++.|+.+ ..+.++| .++.-.. .
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~--~~~~~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDA--ACVFWDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSC--EEEEETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec-CCCCCccccee--EEEEECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555654 3568899988765322 11121111111 12223555 56666654 5788889 5543222 1
Q ss_pred ecCCCCCeEEEeccCCCCccEEEEEecc------CcEEEEecCCCCceeeecCCCC--eEEEEEEcCCCCeEEEeeeccC
Q 001190 490 FEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKD 561 (1128)
Q Consensus 490 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~~~~ 561 (1128)
+.........+.+ ++.+++.|+.+ ..+.+||..+..=...-..... ...++. -+++.++.++....
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGN 161 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESC
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCC
Confidence 2111111122222 45677777765 4577888765432221111111 112222 36666666665332
Q ss_pred C-----CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC-----CcEEEEECCCCeeeEEEecCCCCCC
Q 001190 562 G-----DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLPN 631 (1128)
Q Consensus 562 ~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1128)
. ...+.+||..+.+-...-.......-..++.. ++..++.|+.+ ..+.+||..+.+....-........
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred CCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 2 45688999988754332211111111222222 55666666543 4689999988765443222211111
Q ss_pred cceEEEcCCCCEEEEEEcC-----CcEEEEEcccC
Q 001190 632 LPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1128)
Q Consensus 632 v~~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~ 661 (1128)
..++.+ ++++++.|+.+ ..+.+||..+.
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 122222 66777777754 45777777654
No 329
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.41 E-value=0.15 Score=55.79 Aligned_cols=238 Identities=14% Similarity=0.090 Sum_probs=114.6
Q ss_pred CCCeEEEEe--CCeEEEEECCC--ce--EEEEeeCCCCCeeEEEEcCCCCCEEEEEeC-C---------CcEEEEecccc
Q 001190 842 NDSYVMSAT--GGKISLFNMMT--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTE-D---------STIHIYNVRVD 905 (1128)
Q Consensus 842 dg~~la~~~--dg~i~vwd~~~--~~--~~~~~~~~~~~v~~l~~s~~d~~~lasg~~-d---------g~v~iwd~~~~ 905 (1128)
++++++.|+ ...+.+||..+ .+ .+..+......-.+++.. ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 777777775 45699999864 22 222222111111222222 6778888876 2 46889998876
Q ss_pred ee--eecccccccCeeEEEEcCCCCEEEEEcCC---------------------------------------CcEEEEEC
Q 001190 906 EV--KSKLKGHQKRITGLAFSTSLNILVSSGAD---------------------------------------AQLCVWSI 944 (1128)
Q Consensus 906 ~~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~D---------------------------------------g~i~iwd~ 944 (1128)
+- +..+. ........+...++++++.|+.+ ..+.+||.
T Consensus 97 ~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 97 SWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred cEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 42 22222 01111122222577888888865 46889998
Q ss_pred CCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-------cCeEEEEec--CCccc--ccccccCCCCCCCeEEE
Q 001190 945 DTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-------ETQLAIYDA--SKMER--IRQWTPQDALSAPISCA 1013 (1128)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-------d~~i~v~d~--~~~~~--~~~~~~~~~h~~~v~~l 1013 (1128)
.+.+-.... ...... .....++.. +++.++.+. ...+.+||+ .+..- +..+... .......
T Consensus 176 ~~~~W~~~~--~~p~~~--~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~---~~~~~~~ 247 (357)
T 2uvk_A 176 STQQWSYAG--ESPWYG--TAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSP---DGVAGGF 247 (357)
T ss_dssp TTTEEEEEE--ECSSCC--CBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTT---TCCBSCE
T ss_pred CCCcEEECC--CCCCCC--cccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCC---cccccce
Confidence 875432221 111111 111233333 455555532 235777876 33322 1111111 1111222
Q ss_pred EEeeCCCEEEEEecC----------------------CcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEec
Q 001190 1014 VYSCNSQLVFATFCD----------------------GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1071 (1128)
Q Consensus 1014 ~~s~dg~~l~t~~~d----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 1071 (1128)
+...++++++.|+.+ ..+.+||+.+.+-...-. ++.... .| .++.+
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~--~~----~~~~~-- 315 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQGRA--YG----VSLPW-- 315 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSCCB--SS----EEEEE--
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCCcc--cc----eeEEe--
Confidence 334577777777632 257899998765433221 111111 11 12222
Q ss_pred CCCCEEEEEECCC------cEEEEcCCCCCCCcccCCCCC
Q 001190 1072 LEPNQFAIGLTDG------SVKVMEPSESEGKWGVSPPVD 1105 (1128)
Q Consensus 1072 ~~~~~l~s~~~dg------~i~iWd~~~~~~~w~~~~p~~ 1105 (1128)
++.+++.|+.++ .|.+.++.+ .||.+..|..
T Consensus 316 -~~~i~v~GG~~~~~~~~~~v~~l~~~~--~~~~~~~~~~ 352 (357)
T 2uvk_A 316 -NNSLLIIGGETAGGKAVTDSVLITVKD--NKVTVQNLEH 352 (357)
T ss_dssp -TTEEEEEEEECGGGCEEEEEEEEEC-C--CSCEEEC---
T ss_pred -CCEEEEEeeeCCCCCEeeeEEEEEEcC--cEeEeeeccc
Confidence 578889999664 234446665 5599988764
No 330
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.32 E-value=0.26 Score=52.34 Aligned_cols=230 Identities=10% Similarity=0.029 Sum_probs=109.3
Q ss_pred CCEEEEEeCC----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCC-----CeEEEEe-cCCCeE
Q 001190 418 GNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGRKL 487 (1128)
Q Consensus 418 g~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d-----~~i~vWd-~~g~~~ 487 (1128)
+..++.|+.+ ..+..||..+.+-.. ...+...... .+++ .-++. +++.|+.+ ..+.+|| .+++-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~-~~~~-~~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCR-AGMV-YMAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBS-CEEE-EETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCccccc-ceEE-EECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 3455555543 357888887764222 1111111111 1122 22555 56666644 3578888 444322
Q ss_pred E--EecCCCCCeEEEeccCCCCccEEEEEeccC-----cEEEEecCCCCceeeecCCC--CeEEEEEEcCCCCeEEEeee
Q 001190 488 F--NFEGHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGT 558 (1128)
Q Consensus 488 ~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~--~~i~~~~~s~~g~~l~~~~~ 558 (1128)
. .+.........+.+ ++.+++.|+.++ .+.+||+.+..-...-.... ....++. -+++.++.++.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 164 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGY 164 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCC
Confidence 1 11111111122222 456777777653 46677765543222111111 1112222 35666666665
Q ss_pred ccCC---CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC-----CcEEEEECCCCeeeEEEecCCCCC
Q 001190 559 SKDG---DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLP 630 (1128)
Q Consensus 559 ~~~~---~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1128)
+... ...+.+||..+.+-...-.......-.+++. -++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 3322 3468899988765433211111111112222 255666667653 4689999988765543322211
Q ss_pred CcceEEEcCCCCEEEEEEcCC-----cEEEEEcccC
Q 001190 631 NLPRLRFSKEGNLLAVTTADN-----GFKILANAIG 661 (1128)
Q Consensus 631 ~v~~v~~sp~~~~l~~~~~dg-----~i~iw~~~~~ 661 (1128)
.....+..-++++++.|+.++ .+.+||..+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 111112223667777777543 4777777654
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.99 E-value=0.24 Score=61.90 Aligned_cols=241 Identities=13% Similarity=0.157 Sum_probs=143.9
Q ss_pred EEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccCCCEEEEEeCCC
Q 001190 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 428 (1128)
++-.+|..+ ++|.=. ..++.|+|+++...+.... + ...|.-=.|-.+. .|+-.+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~-----------------~---~e~VvfWkWis~~-~l~lVT-~~ 125 (1630)
T 1xi4_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT-----------------M---TDDVTFWKWISLN-TVALVT-DN 125 (1630)
T ss_pred hhccCCCcc-eEEEec-CCeEEEeehHHhhhhcccc-----------------c---CCCceEEEecCCC-eeEEEc-CC
Confidence 344577776 666643 6799999999887764311 1 2356666665443 344333 34
Q ss_pred eEEEEEccCCCcceeceeeccc----ccceeEEEEecCCCeEEEEEec------CCCeEEEEecCCCeEEEecCCCCCeE
Q 001190 429 LIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVY 498 (1128)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~~~~h----~~~v~~l~fs~d~~~~~l~s~s------~d~~i~vWd~~g~~~~~~~~h~~~v~ 498 (1128)
.|.-|++.+..... ..+..| ...|..-.-+++.++ ++++|- -.|.+.++..+.+.-+.+.||.+...
T Consensus 126 aVyHW~~~~~s~P~--k~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~ 202 (1630)
T 1xi4_A 126 AVYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (1630)
T ss_pred eEEEeccCCCCccH--HHHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeecccccchhhhHhHhhhh
Confidence 69999997532211 124444 456777888899996 333332 34788999977777778888877665
Q ss_pred EEeccCCCCccEEEEEec----cCcEEEEecCCC---Ccee-----e-ecC---CCCeEEEEEEcCCCCeEEEeeeccCC
Q 001190 499 SICPHHKENIQFIFSTAI----DGKIKAWLYDTM---GSRV-----D-YDA---PGHWCTTMLYSADGSRLFSCGTSKDG 562 (1128)
Q Consensus 499 ~~~~~~~~~~~~l~s~~~----dg~i~~wd~~~~---~~~~-----~-~~~---~~~~i~~~~~s~~g~~l~~~~~~~~~ 562 (1128)
.+.+...+....+++-.. .+.+++-++... .... . +.. ...-..++..|+.-..+...+ .
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it----k 278 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT----K 278 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe----c
Confidence 555432222223333222 268888887543 1111 0 111 123445677788777776666 4
Q ss_pred CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeE
Q 001190 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1128)
Q Consensus 563 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 621 (1128)
-|.++++|+.+|.++..-+-... .|...+......-+++....|.|.--.++....+.
T Consensus 279 ~G~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred CceEEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEccchhhh
Confidence 88999999999998766554333 45444444444456666677776666665554443
No 332
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.027 Score=59.99 Aligned_cols=203 Identities=9% Similarity=0.078 Sum_probs=108.7
Q ss_pred CEEEEEeCCCcEEEEecccceeeeccccc-ccCeeEEEE---cCCCCEEEEE-cCCCcEEEEECCCCcccceeEEeecCC
Q 001190 886 NIIAIGTEDSTIHIYNVRVDEVKSKLKGH-QKRITGLAF---STSLNILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAG 960 (1128)
Q Consensus 886 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~---s~d~~~l~s~-~~Dg~i~iwd~~~~~~~~~~~~~~~~~ 960 (1128)
.+++.++.||.|+-.|..+|+.+-+++.. ..++....- ..++..++.. +.||.|..++..+|.............
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46788999999999999999988877654 122222110 0123333333 589999999998885443222221110
Q ss_pred CCCCCccE---EEE------cCCCCEEEEEecCeEEEEecCCcccccccccCCCCC----CCeEEEEEe-----eCCCEE
Q 001190 961 KTPTGDTR---VQF------NADQVRMLVVHETQLAIYDASKMERIRQWTPQDALS----APISCAVYS-----CNSQLV 1022 (1128)
Q Consensus 961 ~~~~~v~~---v~~------s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~----~~v~~l~~s-----~dg~~l 1022 (1128)
..+... ... +.++..++.+.++.+...|+.+|+.+..+....... ....|.... ..+..|
T Consensus 91 --~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 91 --TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp --TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred --ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 011110 001 244544445669999999999999988876532100 001111111 124567
Q ss_pred EEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCCCCCCc
Q 001190 1023 FATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKW 1098 (1128)
Q Consensus 1023 ~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~~~~~w 1098 (1128)
+.+..+..+.+.+ .+|+ +.......+..... .... ......+. |+.+ +.++.||.|.-.|..+|+.+|
T Consensus 169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~---~~~~-~~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL---DVPL-ALQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEECEECC-TTSC-CCCCEEEEEECCTT---THHH-HTTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEecceEEEEEEC-CCCC-eEEEeccccccccc---cccc-cccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 7788888888777 5564 32221000000000 0000 00000011 3444 558999999999999999999
No 333
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.94 E-value=1 Score=50.26 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=78.8
Q ss_pred CCCeeEEEeccCCCeEEEEe--CCeEEEEECCCceE-------------EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001190 831 EEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKV-------------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 895 (1128)
Q Consensus 831 ~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~-------------~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg 895 (1128)
......+.++|||+++++++ +.++.|+|++.... ..+.. -.-.....+|.+ +|....+..-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 34456789999999999987 78899999874211 22222 234567899999 787667777999
Q ss_pred cEEEEecccc----------eeeecccccccCeeEE-----EEcCCCCEEEEE---cCCCcE----------EEEECCCC
Q 001190 896 TIHIYNVRVD----------EVKSKLKGHQKRITGL-----AFSTSLNILVSS---GADAQL----------CVWSIDTW 947 (1128)
Q Consensus 896 ~v~iwd~~~~----------~~~~~l~~h~~~V~~l-----~~s~d~~~l~s~---~~Dg~i----------~iwd~~~~ 947 (1128)
.|.-|++... ..+.++..|-.+.... .-.+||++|++. +.|+.+ .+.|+...
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd 479 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD 479 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence 9999999764 3445555553332221 125799999987 456543 67787654
Q ss_pred c
Q 001190 948 E 948 (1128)
Q Consensus 948 ~ 948 (1128)
+
T Consensus 480 k 480 (638)
T 3sbq_A 480 E 480 (638)
T ss_dssp S
T ss_pred c
Confidence 4
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.77 E-value=0.57 Score=49.97 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=98.7
Q ss_pred EeccCCCeEEEEe-----CC-------eEEEEECCCceEEEEeeCCCCCe-eEEEEcCCCCCEEEEEeCC--------Cc
Q 001190 838 ALSKNDSYVMSAT-----GG-------KISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTED--------ST 896 (1128)
Q Consensus 838 ~~s~dg~~la~~~-----dg-------~i~vwd~~~~~~~~~~~~~~~~v-~~l~~s~~d~~~lasg~~d--------g~ 896 (1128)
+...++++++.|+ ++ .+.+||..+.+-...-....... .+++.. ++++++.|+.+ ..
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence 3345777777665 11 27788988765422111111111 122222 66777887743 45
Q ss_pred EEEEecccce--eeecccccccCeeEEEEcCCCCEEEEEcC-C-----CcEEEEECCCCcccceeEEeecCCCCCCCccE
Q 001190 897 IHIYNVRVDE--VKSKLKGHQKRITGLAFSTSLNILVSSGA-D-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTR 968 (1128)
Q Consensus 897 v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~~~-D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 968 (1128)
+.+||..+.+ .+..+......-..+ ..++++++.|+. + ..+.+||..+.+-.. +.. .........
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~--~p~~r~~~~ 191 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYGHTVL--SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE---LAP--MQTARSLFG 191 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE---CCC--CSSCCBSCE
T ss_pred EEEECCCCCcEeECCCCCCcccceeEE--EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE---CCC--CCCchhceE
Confidence 8899988763 222222211111122 246677777776 2 468899988754221 111 111111122
Q ss_pred EEEcCCCCEEEEEe-c-----CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC--------------
Q 001190 969 VQFNADQVRMLVVH-E-----TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-------------- 1028 (1128)
Q Consensus 969 v~~s~d~~~l~~~~-d-----~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-------------- 1028 (1128)
++.. +++.++.|. + ..+.+||..+.+-...-... .......+..-++++++.|+.+
T Consensus 192 ~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~ 267 (315)
T 4asc_A 192 ATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP---QERSSLSLVSLVGTLYAIGGFATLETESGELVPTEL 267 (315)
T ss_dssp EEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS---SCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEE
T ss_pred EEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCC---CcccceeEEEECCEEEEECCccccCcCCcccccccc
Confidence 2222 556666653 2 25889998876443322111 1111112223377777777754
Q ss_pred CcEEEEecCCCceEEE
Q 001190 1029 GNIGVFDADTLRLRCY 1044 (1128)
Q Consensus 1029 g~i~vwd~~~~~~~~~ 1044 (1128)
..+.+||+++.+-...
T Consensus 268 ~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 268 NDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred CcEEEecCCCChhhhh
Confidence 2478899988765443
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.73 E-value=0.95 Score=48.27 Aligned_cols=223 Identities=12% Similarity=0.075 Sum_probs=112.9
Q ss_pred CeEEEEECCCceEEE-EeeCCCCCeeEEEEcCCCCCEEEEEeC----CC-------cEEEEecccceee--ecccccccC
Q 001190 852 GKISLFNMMTFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGTE----DS-------TIHIYNVRVDEVK--SKLKGHQKR 917 (1128)
Q Consensus 852 g~i~vwd~~~~~~~~-~~~~~~~~v~~l~~s~~d~~~lasg~~----dg-------~v~iwd~~~~~~~--~~l~~h~~~ 917 (1128)
..+.+||..+.+-.. .+..........+... ++.+++.|+. ++ .+.+||..+.+-. ..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 348899998876543 2222122333333444 7788888883 12 1778888765432 222211111
Q ss_pred eeEEEEcCCCCEEEEEcCC-------CcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-------c
Q 001190 918 ITGLAFSTSLNILVSSGAD-------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-------E 983 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~D-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-------d 983 (1128)
-..+.+ ++++++.|+.+ ..+.+||..+.+-.. ...... ...-..++. .+++.++.|. -
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~--~r~~~~~~~-~~~~iyv~GG~~~~~~~~ 174 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE---VKNLPI--KVYGHNVIS-HNGMIYCLGGKTDDKKCT 174 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE---ECCCSS--CEESCEEEE-ETTEEEEECCEESSSCBC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE---CCCCCC--cccccEEEE-ECCEEEEEcCCCCCCCcc
Confidence 122222 66777777754 247788887754211 111110 011112222 4566666542 1
Q ss_pred CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC-----CcEEEEecCCCceEEEeCCCCCCCCcccCC
Q 001190 984 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLSPSVLNG 1058 (1128)
Q Consensus 984 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1128)
..+.+||..+.+-...-.... ...-.++ ..-++++++.|+.+ ..+.+||+++.+-... .. ++....
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p~--~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~p~~r~-- 245 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMKT--PRSMFGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-TE---FPQERS-- 245 (318)
T ss_dssp CCEEEEETTTTEEEEECCCSS--CCBSCEE-EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-CC---CSSCCB--
T ss_pred ceEEEEcCCCCEEEECCCCCC--CcccceE-EEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-CC---CCCccc--
Confidence 358999988765332211111 1111122 22377777777643 3578899988764332 21 111111
Q ss_pred CCccceEEEEEecCCCCEEEEEECC--------------CcEEEEcCCCCCCCcccC
Q 001190 1059 SQTVYPLVVAAHPLEPNQFAIGLTD--------------GSVKVMEPSESEGKWGVS 1101 (1128)
Q Consensus 1059 ~~~~~~~~~~~~p~~~~~l~s~~~d--------------g~i~iWd~~~~~~~w~~~ 1101 (1128)
.| ..+.+ ++.+++.|+.+ ..+.++|+.+.+ |...
T Consensus 246 ~~----~~~~~---~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~ 293 (318)
T 2woz_A 246 SI----SLVSL---AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE--WAGM 293 (318)
T ss_dssp SC----EEEEE---TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE--EEEE
T ss_pred ce----EEEEE---CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE--ehhh
Confidence 11 11222 46788888764 357778887754 9876
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.71 E-value=0.085 Score=51.30 Aligned_cols=146 Identities=12% Similarity=0.012 Sum_probs=82.8
Q ss_pred CeeEEEeccCCCeEEEEeCCeEEEEECCCceE------EEEee-CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccc
Q 001190 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKV------MTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 905 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~------~~~~~-~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~ 905 (1128)
.+..++|+|+|.+.++ .+|.+.-.+..+... -..+- .--..-.++.|.+ ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5779999999998888 888877666644211 11111 0011147899999 8888877 5699988876432
Q ss_pred eeeecc-------cccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCccccee--EEeecCCCCCCCccEEEEcCCCC
Q 001190 906 EVKSKL-------KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV--TIHIPAGKTPTGDTRVQFNADQV 976 (1128)
Q Consensus 906 ~~~~~l-------~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~v~~v~~s~d~~ 976 (1128)
....-+ .+-=..+..|.|.|+|.+.+.. |+.+.-+..-++...... ......... ...+.+.|.+++.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~-~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW-DTFKFLFFSSVGT 194 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG-GGEEEEEECTTSC
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc-ceEEEEEECCCCc
Confidence 111111 1111467899999999887766 776433322211100000 000000000 2334567899998
Q ss_pred EEEEEecCeE
Q 001190 977 RMLVVHETQL 986 (1128)
Q Consensus 977 ~l~~~~d~~i 986 (1128)
..++. ++.+
T Consensus 195 l~~v~-~g~~ 203 (236)
T 1tl2_A 195 LFGVQ-GGKF 203 (236)
T ss_dssp EEEEE-TTEE
T ss_pred EEEEe-CCeE
Confidence 88877 5543
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.67 E-value=0.62 Score=49.45 Aligned_cols=231 Identities=6% Similarity=-0.047 Sum_probs=109.7
Q ss_pred cCCCEEEEEeCC----CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecC----C-----CeEEEEe-
Q 001190 416 PDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----D-----KLIKVWE- 481 (1128)
Q Consensus 416 pdg~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~----d-----~~i~vWd- 481 (1128)
-++..++.|+.+ ..+.+||..+++-... ..+...... .+++ .-++. +++.|+. + ..+.++|
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~-~~~~-~~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVPRSG-LAGC-VVGGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSCCBS-CEEE-EETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCccccc-ceEE-EECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 356677777632 3588999887643221 111111111 1222 22555 5666665 2 4578888
Q ss_pred cCCCeEEEec---CCCCCeEEEeccCCCCccEEEEEecc-----CcEEEEecCCCCceeeecCC--CCeEEEEEEcCCCC
Q 001190 482 LSGRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGS 551 (1128)
Q Consensus 482 ~~g~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~--~~~i~~~~~s~~g~ 551 (1128)
.+++- ..+. ........+.+ ++.+++.|+.+ ..+.+||..+..-...-... .....++.+ +++
T Consensus 98 ~~~~W-~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 170 (308)
T 1zgk_A 98 MTNQW-SPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRL 170 (308)
T ss_dssp TTTEE-EECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred CCCeE-eECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCE
Confidence 44432 2221 11111122222 45677777654 35777777654322211111 111122222 566
Q ss_pred eEEEeeeccCC-CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECC-----CcEEEEECCCCeeeEEEec
Q 001190 552 RLFSCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 552 ~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~ 625 (1128)
.++.++.+... ...+.+||..+.+-...-.......-..++.. ++..++.|+.+ ..+.+||+.+.+....-..
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 66666643221 35688899887653322111111111122222 55666666654 5699999988765543222
Q ss_pred CCCCCCcceEEEcCCCCEEEEEEcC-----CcEEEEEcccC
Q 001190 626 EGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1128)
Q Consensus 626 ~~~~~~v~~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~ 661 (1128)
.... .-.+++. -++++++.|+.+ ..+.+||..+.
T Consensus 250 p~~r-~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 250 KHRR-SALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SSCC-BSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCc-cceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2111 1112222 256777777643 34666776554
No 338
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.66 E-value=0.01 Score=47.22 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC--HHHHHHHhhccCHHHHHHHHc
Q 001190 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN--MKYFEEKVQAGDWDEVEKYLS 58 (1128)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~ 58 (1128)
++|+.+-|++||..+||.+++.+|.+|.+++.+ ...-..-+++-.|..++.+-.
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQK 65 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK 65 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Confidence 579999999999999999999999999998875 122345566667765554433
No 339
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.62 E-value=2.7 Score=44.09 Aligned_cols=182 Identities=12% Similarity=0.069 Sum_probs=98.8
Q ss_pred EEEEeCCCCcEEEEeecc-------------CeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEc
Q 001190 349 SMDFHPSHQTLLLVGSSN-------------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1128)
Q Consensus 349 ~v~fspdg~~lla~gs~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 415 (1128)
+--|+++|.++..+...+ ..|+..+++.++... +... .+.+|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~----~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD----PCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS----CEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC----CccEEE
Confidence 456789999777666543 356666666554221 1111 123788
Q ss_pred cCCCEEEEEe--CC--CeEEEEEccCCCcceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEec
Q 001190 416 PDGNYVGVAF--TK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491 (1128)
Q Consensus 416 pdg~~las~~--~d--~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~ 491 (1128)
++|++|+-.. .+ ..|..-+++... .+ .+..+.. .+|+++++. +..+......|.+-+.+|.....+.
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 33 345555655433 22 2333432 457888985 3334444678888886666555553
Q ss_pred CCCCCeEEEeccCCCCccEEEEEeccC--cEEEEecCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEE
Q 001190 492 GHEAPVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1128)
Q Consensus 492 ~h~~~v~~~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~w 569 (1128)
. +... ..++| ++.+|+-...++ .|..-+++.... ..+.. ..+ ..++|++++|..+... +...|..-
T Consensus 184 ~--~~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~~~--~~~~i~~~ 251 (302)
T 3s25_A 184 D--CNCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQRGG--DNPALCVV 251 (302)
T ss_dssp C--SCEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEECS--SSCEEEEE
T ss_pred C--CCcc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEECC--CCcEEEEE
Confidence 2 2222 23444 445665554433 444445544332 22222 223 3478899998765321 23567777
Q ss_pred eCCCCc
Q 001190 570 NESEGT 575 (1128)
Q Consensus 570 d~~~~~ 575 (1128)
++....
T Consensus 252 ~~DG~~ 257 (302)
T 3s25_A 252 KNDGTG 257 (302)
T ss_dssp ETTSCC
T ss_pred ECCCCc
Confidence 765443
No 340
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.57 E-value=3.1 Score=44.42 Aligned_cols=113 Identities=13% Similarity=0.050 Sum_probs=64.9
Q ss_pred CCCcEEEEEEeCCCCcEEEEeeccCeEEEEEccCCceecccccccccccccCccccceeccCCCcceEEEEEccC---CC
Q 001190 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GN 419 (1128)
Q Consensus 343 h~~~V~~v~fspdg~~lla~gs~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 419 (1128)
.-...+.++|.|||+ ++++-...|.|++++..+++......+ ..+.....+....|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence 345689999999998 666654489999988665543210000 0112334677899999996 34
Q ss_pred EEEEE-e--CCCeEEEEEccCCC----c---ceece-eec-ccccceeEEEEecCCCeEEEEEe
Q 001190 420 YVGVA-F--TKHLIQLYSYAGSN----D---LRQHS-QID-AHVGAVNDLAFAYPNKLLCVVTC 471 (1128)
Q Consensus 420 ~las~-~--~d~~i~vwd~~~~~----~---~~~~~-~~~-~h~~~v~~l~fs~d~~~~~l~s~ 471 (1128)
+|... + .++.|.-|.+..+. . .+.+. .+. +....-..|+|.|||. +.++.
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~ 157 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGT 157 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEE
Confidence 44432 2 34556667665521 1 11111 121 1122356799999997 44543
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.48 E-value=0.82 Score=48.11 Aligned_cols=201 Identities=9% Similarity=0.043 Sum_probs=112.5
Q ss_pred EecCCCeEEEEEecCCCeEEEEecCCCeEEEecCCCCCeEEEeccCCCCccEEEEEecc--------------CcEEEEe
Q 001190 459 FAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--------------GKIKAWL 524 (1128)
Q Consensus 459 fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d--------------g~i~~wd 524 (1128)
|+.+|..+++.....++.|...+.+|.....+.... +..+ ++ ++.+|+-+... ..|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~--~~~i--~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT--AMYI--NA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE--EEEE--EE--CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc--eeeE--EE--cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 445677544444444667777777776665554321 2323 22 44566655442 3566666
Q ss_pred cCCCCceeeecCCCCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE
Q 001190 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1128)
Q Consensus 525 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 604 (1128)
++.......... . +..+++++++|+......++...|+..++..... ..+..+.. ..++++++.|+..+
T Consensus 95 ~dg~~~~~l~~~-~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~-----~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 95 RNGHGSTVLDPD-P----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL-----FTCNTSDRYFYYNN 163 (302)
T ss_dssp TTSCCCEEEECS-C----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC-----CCSEEETTEEEEEC
T ss_pred CCCCcceEeecC-C----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc-----eEeeEECCEEEEEe
Confidence 665543332221 1 2367789999987652223577788888875443 33333221 34577888888776
Q ss_pred C-CCcEEEEECCCCeeeEEEecCCCCCCcceEEEcCCCCEEEEEEcCC--cEEEEEcccCccccccccCCccccccCcce
Q 001190 605 E-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN--GFKILANAIGLRSLRAVENPPFEALRTPIE 681 (1128)
Q Consensus 605 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~i~ 681 (1128)
. ...|++-++..+....... +. . ...++|++.+|+-....+ .|..-++.... .+.+.. ..+
T Consensus 164 ~g~~~Iy~~~l~g~~~~~l~~--~~---~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~--~~~Lt~-------~~~- 227 (302)
T 3s25_A 164 PKNGQLYRYDTASQSEALFYD--CN---C-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN--PVVLTE-------ANI- 227 (302)
T ss_dssp TTTCCEEEEETTTTEEEEEEC--SC---E-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC--CEECSC-------SCE-
T ss_pred CCCceEEEEECCCCCEEEEeC--CC---c-cceeeecCCEEEEEEcCCCcEEEEEECCCCC--eEEEeC-------CCc-
Confidence 5 6788888988776544332 21 1 234668888888776543 45444444432 122211 111
Q ss_pred eeeeeccccccc
Q 001190 682 SVALKVSASSAV 693 (1128)
Q Consensus 682 ~~~~s~~g~~l~ 693 (1128)
..++|++..|.
T Consensus 228 -~~~~~~g~~Iy 238 (302)
T 3s25_A 228 -EHYNVYGSLIF 238 (302)
T ss_dssp -EEEEEETTEEE
T ss_pred -ceEEECCCEEE
Confidence 24778887774
No 342
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.44 E-value=0.26 Score=47.95 Aligned_cols=146 Identities=13% Similarity=0.068 Sum_probs=82.9
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecccccccC--------eeEEEEcCCCCEEEEEcCCCcEEEEEC
Q 001190 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR--------ITGLAFSTSLNILVSSGADAQLCVWSI 944 (1128)
Q Consensus 873 ~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~--------V~~l~~s~d~~~l~s~~~Dg~i~iwd~ 944 (1128)
..++.++|+| ++.+.++ .+|.++-.+..++... .+.+-... -.++.|.++|.+.++ .||.|.-++-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 3678999999 8988777 6787776665442221 11111222 378999999998887 5688877765
Q ss_pred CCCcccceeE--EeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccccc-----cccCCCCCCCeEEEEEee
Q 001190 945 DTWEKRKSVT--IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQ-----WTPQDALSAPISCAVYSC 1017 (1128)
Q Consensus 945 ~~~~~~~~~~--~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~-----~~~~~~h~~~v~~l~~s~ 1017 (1128)
-+......+- ..+....- ..+..|.|.|+|.+.++. ++.++-....+.....- ..... .-..-.-+.|++
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw-~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~-g~~~yr~l~f~~ 191 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGW-SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQG-GWDTFKFLFFSS 191 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSG-GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESS-SGGGEEEEEECT
T ss_pred CcCCCCceeccccEeccCCC-CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccC-CcceEEEEEECC
Confidence 3321111100 00000000 356889999999999998 88865444332221111 00100 022334466888
Q ss_pred CCCEEEEEecCC
Q 001190 1018 NSQLVFATFCDG 1029 (1128)
Q Consensus 1018 dg~~l~t~~~dg 1029 (1128)
+|.+.++. +|
T Consensus 192 ~G~l~~v~--~g 201 (236)
T 1tl2_A 192 VGTLFGVQ--GG 201 (236)
T ss_dssp TSCEEEEE--TT
T ss_pred CCcEEEEe--CC
Confidence 88766655 55
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.35 E-value=0.56 Score=50.13 Aligned_cols=194 Identities=9% Similarity=0.016 Sum_probs=97.9
Q ss_pred EeccCCCeEEEEeC-----C-------eEEEEECCCceEEEEeeCCCCC-eeEEEEcCCCCCEEEEEeCC-------CcE
Q 001190 838 ALSKNDSYVMSATG-----G-------KISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGTED-------STI 897 (1128)
Q Consensus 838 ~~s~dg~~la~~~d-----g-------~i~vwd~~~~~~~~~~~~~~~~-v~~l~~s~~d~~~lasg~~d-------g~v 897 (1128)
+...++++++.|+. + .+.+||..+.+-...-...... -.+++.. ++++++.|+.+ ..+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 34457777777751 1 1778888776543221111111 1222222 66788888754 257
Q ss_pred EEEeccccee--eecccccccCeeEEEEcCCCCEEEEEcCC------CcEEEEECCCCcccceeEEeecCCCCCCCccEE
Q 001190 898 HIYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 969 (1128)
Q Consensus 898 ~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~~~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v 969 (1128)
.+||..+.+- +..+......-..+. .++++++.|+.+ ..+.+||+.+.+-.. ..... .......+
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~~p--~~r~~~~~ 202 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD---LAPMK--TPRSMFGV 202 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEE---ECCCS--SCCBSCEE
T ss_pred EEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE---CCCCC--CCcccceE
Confidence 8888876532 222221111111222 467777777642 358899998754221 11111 11111223
Q ss_pred EEcCCCCEEEEEe-c-----CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEecC--------------C
Q 001190 970 QFNADQVRMLVVH-E-----TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD--------------G 1029 (1128)
Q Consensus 970 ~~s~d~~~l~~~~-d-----~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~d--------------g 1029 (1128)
+. -+++.++.|. + ..+.+||..+.+-...-... .......+...++++++.|+.+ .
T Consensus 203 ~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~ 278 (318)
T 2woz_A 203 AI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFP---QERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVN 278 (318)
T ss_dssp EE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCS---SCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCC
T ss_pred EE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCC---CcccceEEEEECCEEEEECCeeccCCCCceeccceee
Confidence 33 2556666543 1 35778998876533221111 1111112223467777777654 4
Q ss_pred cEEEEecCCCceEEE
Q 001190 1030 NIGVFDADTLRLRCY 1044 (1128)
Q Consensus 1030 ~i~vwd~~~~~~~~~ 1044 (1128)
.+.+||+++.+-...
T Consensus 279 ~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 279 DIWKYEDDKKEWAGM 293 (318)
T ss_dssp CEEEEETTTTEEEEE
T ss_pred eEEEEeCCCCEehhh
Confidence 588999988765444
No 344
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.22 E-value=0.56 Score=50.71 Aligned_cols=135 Identities=19% Similarity=0.141 Sum_probs=86.2
Q ss_pred cCcEEEEecCCCCceeeecCC----CCeEEEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc------------eeeEe
Q 001190 517 DGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT------------IKRTY 580 (1128)
Q Consensus 517 dg~i~~wd~~~~~~~~~~~~~----~~~i~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~------------~~~~~ 580 (1128)
++.||..++.....-..+... -..|..+..||+|++|+..+ +..|.|..+..+. ..+.+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-----SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-----CCeEEEEEecCccccCcccccccccceeEE
Confidence 466666666533322223332 22577799999999999986 7788888877332 11223
Q ss_pred ccc-----cCCceeEEEEeCCC---CEEEEEECCCcEEEEECCCCe--ee------EEEecCCCCCCcceEEEcCCCCEE
Q 001190 581 AGF-----RKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVN--IL------TSTDAEGGLPNLPRLRFSKEGNLL 644 (1128)
Q Consensus 581 ~~~-----~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd~~~~~--~~------~~~~~~~~~~~v~~v~~sp~~~~l 644 (1128)
.-. ....|..+.|+|-+ ..|++-..|+.|++||+.... +. ..+........|.+++|.+++-.|
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTL 194 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTL 194 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCE
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEE
Confidence 221 12358889999854 689999999999999997522 22 112222223467888998887777
Q ss_pred EEEE--cCCcEEEE
Q 001190 645 AVTT--ADNGFKIL 656 (1128)
Q Consensus 645 ~~~~--~dg~i~iw 656 (1128)
.+.+ .+|.|+-.
T Consensus 195 Yvl~~t~~GDIYAl 208 (452)
T 3pbp_A 195 YCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEecCCCCCEEEE
Confidence 7755 66776543
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.051 Score=57.91 Aligned_cols=196 Identities=10% Similarity=0.003 Sum_probs=101.1
Q ss_pred eEEEEe-CCeEEEEECCCceEEEEeeCC-CCCeeEEEE--cCCCCCEEEEE-eCCCcEEEEecccceeeecccc----cc
Q 001190 845 YVMSAT-GGKISLFNMMTFKVMTTFMSP-PPASTFLAF--HPQDNNIIAIG-TEDSTIHIYNVRVDEVKSKLKG----HQ 915 (1128)
Q Consensus 845 ~la~~~-dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~--s~~d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~----h~ 915 (1128)
.+++++ ||.|.-+|..+|+.+.++... ..++....- .+.++..++.. +.||.|+.++..+|.....+.. ..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 444454 999999999999999888754 112211110 01133444443 6899999999888854433221 11
Q ss_pred cCeeE---EEE-----cCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCC----CCCCccEEEEc--CCCCEEEEE
Q 001190 916 KRITG---LAF-----STSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGK----TPTGDTRVQFN--ADQVRMLVV 981 (1128)
Q Consensus 916 ~~V~~---l~~-----s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~v~~v~~s--~d~~~l~~~ 981 (1128)
.++.. ..+ +..+..+++++.+|.+...|+.+|+.+..+......+. .........+. ..+..++.+
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig 171 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIG 171 (339)
T ss_dssp CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEE
T ss_pred cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEe
Confidence 22211 000 01345778899999999999999998766543322110 00000000010 112345554
Q ss_pred -ecCeEEEEecCCcccccccccCCCCCCCeE-----EEEEeeCCCEEEEEecCCcEEEEecCCCceEE
Q 001190 982 -HETQLAIYDASKMERIRQWTPQDALSAPIS-----CAVYSCNSQLVFATFCDGNIGVFDADTLRLRC 1043 (1128)
Q Consensus 982 -~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~-----~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~ 1043 (1128)
.+..+.+.+ .+|+ +..+.........+. ...++.|+++ ++++.||.|.-+|..+|+.+.
T Consensus 172 ~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 172 KTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred cceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 355666655 4443 211110000000000 0011245776 447889999999999999876
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.74 E-value=1.7 Score=48.64 Aligned_cols=196 Identities=9% Similarity=0.147 Sum_probs=111.2
Q ss_pred CCCeEEEEe--CCeEEEEECCCceEEEEeeCC-CCCeeEEEEc--CCCCCEEEEEeC-------CCcE---------EEE
Q 001190 842 NDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAFH--PQDNNIIAIGTE-------DSTI---------HIY 900 (1128)
Q Consensus 842 dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s--~~d~~~lasg~~-------dg~v---------~iw 900 (1128)
||+||..-. +..|...+++..++-..+.-. ...+..++|- | +..+++.+++ ||.. .+|
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 788998887 577999999999887666543 3467788876 5 6667776652 3321 111
Q ss_pred ---ecccceeeecccccccCeeEEEEcCCCCEEEEEcCCC---------------cEEEEECCC-------Cc--ccc--
Q 001190 901 ---NVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA---------------QLCVWSIDT-------WE--KRK-- 951 (1128)
Q Consensus 901 ---d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg---------------~i~iwd~~~-------~~--~~~-- 951 (1128)
|..+-+....+.- .+....+...++|++.++.+.+. .+.++++.. |+ .+.
T Consensus 220 ~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp EEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 1111111111100 11222344566777777665431 244555421 11 011
Q ss_pred eeE-EeecC----C-------CCCCCccEEEEcCCCCEEEEEe--cCeEEEEecCCcccc---------cccccCCCCCC
Q 001190 952 SVT-IHIPA----G-------KTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERI---------RQWTPQDALSA 1008 (1128)
Q Consensus 952 ~~~-~~~~~----~-------~~~~~v~~v~~s~d~~~l~~~~--d~~i~v~d~~~~~~~---------~~~~~~~~h~~ 1008 (1128)
..+ +.... . ..+.....+.++|||++++++. +.++.|+|+.+.... ..........-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 000 00000 0 0014566789999999999986 788999999853220 00111111156
Q ss_pred CeEEEEEeeCCCEEEEEecCCcEEEEecCCC
Q 001190 1009 PISCAVYSCNSQLVFATFCDGNIGVFDADTL 1039 (1128)
Q Consensus 1009 ~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~ 1039 (1128)
.....+|.++|....+-.-|..|..|++...
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 6788999999954445668999999999764
No 347
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.70 E-value=1.8 Score=46.87 Aligned_cols=198 Identities=4% Similarity=-0.083 Sum_probs=93.8
Q ss_pred CCCeEEEEeC-----------CeEEEEECCCceEEEEeeCC-CCCeeEEEEcCCCCCEEEEEeCC---------------
Q 001190 842 NDSYVMSATG-----------GKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTED--------------- 894 (1128)
Q Consensus 842 dg~~la~~~d-----------g~i~vwd~~~~~~~~~~~~~-~~~v~~l~~s~~d~~~lasg~~d--------------- 894 (1128)
++++++.|+. +.+.+||..+.+-...-... .......+... ++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~ 143 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAG 143 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcC
Confidence 6666666542 34889999876533221111 22222212223 77888888865
Q ss_pred ------------------------CcEEEEecccce--eeecccccccCeeEEEEcCCCCEEEEEcCC------CcEEEE
Q 001190 895 ------------------------STIHIYNVRVDE--VKSKLKGHQKRITGLAFSTSLNILVSSGAD------AQLCVW 942 (1128)
Q Consensus 895 ------------------------g~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~~~D------g~i~iw 942 (1128)
..+.+||..+.+ .+..+......-.+++.. ++++++.|+.+ ..+.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~ 222 (357)
T 2uvk_A 144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFEL 222 (357)
T ss_dssp TCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEE
T ss_pred CcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEE
Confidence 478899987653 232222111110122222 56677777642 357778
Q ss_pred ECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEe-c----------------------CeEEEEecCCcccccc
Q 001190 943 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E----------------------TQLAIYDASKMERIRQ 999 (1128)
Q Consensus 943 d~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d----------------------~~i~v~d~~~~~~~~~ 999 (1128)
|++..... ...+....... ......+...+++.++.|. + ..+.+||..+.+-...
T Consensus 223 d~d~~~~~-W~~~~~~~~~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~ 300 (357)
T 2uvk_A 223 DFTGNNLK-WNKLAPVSSPD-GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300 (357)
T ss_dssp ECC---CE-EEECCCSSTTT-CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred EecCCCCc-EEecCCCCCCc-ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence 77322111 11111111110 1112223334556666543 1 2577899886643222
Q ss_pred cccCCCCCCCeEEEEEeeCCCEEEEEecCC------cEEEEecCCCceEEEeC
Q 001190 1000 WTPQDALSAPISCAVYSCNSQLVFATFCDG------NIGVFDADTLRLRCYIA 1046 (1128)
Q Consensus 1000 ~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg------~i~vwd~~~~~~~~~~~ 1046 (1128)
-... .......+...++++++.|+.++ .|.++++++++.+....
T Consensus 301 ~~~p---~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 301 GELS---QGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EECS---SCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred CCCC---CCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 1111 11111223445788888888543 36667888877765544
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.43 E-value=2.2 Score=47.90 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=61.7
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEeccccee--eecccc------cccCeeEEEEcCC---CC-EEEEEcC-----
Q 001190 873 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV--KSKLKG------HQKRITGLAFSTS---LN-ILVSSGA----- 935 (1128)
Q Consensus 873 ~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~V~~l~~s~d---~~-~l~s~~~----- 935 (1128)
.....++|.| +|+++++-...+.|++++..+++. +..+.. ..+....|+|+|| +. +.++-+.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 888777655445788887655533 222221 2356779999995 44 4444332
Q ss_pred -------CCcEEEEECCCCc--c--cceeEEeecCCCCCCCccEEEEcCCCCEEEEEe
Q 001190 936 -------DAQLCVWSIDTWE--K--RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH 982 (1128)
Q Consensus 936 -------Dg~i~iwd~~~~~--~--~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 982 (1128)
...|.-|++..+. . ...+....... .......|+|.|||.+.++..
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEEC
Confidence 1345555554321 1 11111112211 124578999999998777743
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.18 E-value=3.4 Score=42.89 Aligned_cols=222 Identities=12% Similarity=0.063 Sum_probs=113.3
Q ss_pred CeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc
Q 001190 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 912 (1128)
.|..++....- .++.. ||.|..|-....-.+..-......|..++... ...++. . ||.|+.|-....-.+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 46666654332 23333 78888886543211111111123577777753 334444 5 9999999865422111111
Q ss_pred ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecC
Q 001190 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~ 992 (1128)
.-...|..++...+. .+... ||.|..|-.....++... . .....+..++.-.+...+ .. ++.+..|-..
T Consensus 99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~-~-----~~~~~i~~i~~G~~~~~~-l~-~G~v~~wG~n 167 (282)
T 3qhy_B 99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVP-A-----EAQSGVTALDGGVYTALA-VK-NGGVIAWGDN 167 (282)
T ss_dssp GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCC-G-----GGGSSEEEEEECSSEEEE-EE-TTEEEEEECC
T ss_pred ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCC-c-----cCCCCeEEEEcccCEEEE-EE-CCEEEEecCC
Confidence 112467777776543 33334 899999987654332210 0 011345555544443332 23 7899988776
Q ss_pred CcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecC
Q 001190 993 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1072 (1128)
Q Consensus 993 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1072 (1128)
....+...... ...|..++-..+ +.+.- .||.|+.|-....-.+. .+... ...+..++...
T Consensus 168 ~~gqlg~p~~~---~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg-------~p~~~-----~~~v~~i~~G~- 228 (282)
T 3qhy_B 168 YFGQTTVPAEA---QSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTT-------VPTEA-----LSGVSAIASGE- 228 (282)
T ss_dssp TTSTTSCCGGG---GSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTC-------CCGGG-----GSSCCEEEECS-
T ss_pred CCCCCCCceec---CCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCC-------CCccc-----CCCceEEEcCC-
Confidence 54443321111 456777765433 33333 69999999765432211 11111 11244555433
Q ss_pred CCCEEEEEECCCcEEEEcCCC
Q 001190 1073 EPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1073 ~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
...++.. ||+|..|-..+
T Consensus 229 -~h~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 229 -WYSLALK--NGKVIAWGSSR 246 (282)
T ss_dssp -SCEEEEE--TTEEEEESTTC
T ss_pred -CEEEEEE--CCEEEEecCCC
Confidence 2444444 99999996544
No 350
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=92.91 E-value=0.32 Score=44.99 Aligned_cols=79 Identities=13% Similarity=0.265 Sum_probs=55.9
Q ss_pred hHHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhhhcccCC-------chHHHHHH
Q 001190 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (1128)
Q Consensus 71 ~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (1128)
+++|.|+-+.||||+..|...+|..|+++--.-+.....+.+++|..+....+..+++....+.. .+.+-..|
T Consensus 51 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL 130 (156)
T 2nxp_A 51 QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLL 130 (156)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHH
Confidence 39999999999999999999999999987554444556788888887776655554444433333 23344466
Q ss_pred HHHHHh
Q 001190 144 LIELKK 149 (1128)
Q Consensus 144 ~~~l~~ 149 (1128)
+..|++
T Consensus 131 ~~fL~~ 136 (156)
T 2nxp_A 131 KRHLQE 136 (156)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 666665
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.73 E-value=15 Score=41.03 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=35.0
Q ss_pred ceEEEEEccCCC-EEEEEeCCCeEEEEEccCCC---cceece-ee-c----ccccceeEEEEecC
Q 001190 408 SVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSN---DLRQHS-QI-D----AHVGAVNDLAFAYP 462 (1128)
Q Consensus 408 ~V~~l~~spdg~-~las~~~d~~i~vwd~~~~~---~~~~~~-~~-~----~h~~~v~~l~fs~d 462 (1128)
.-..|+|.|||. .|+++...|.|++++.+... .+..+. .+ . +.......|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 457899999996 56666788999999754321 111110 01 1 12456889999997
No 352
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=92.66 E-value=18 Score=43.01 Aligned_cols=246 Identities=9% Similarity=0.054 Sum_probs=121.5
Q ss_pred EEE-EeCCCCcEEEEeeccC----eEEEEEccCCceecccccccccccccCccccceeccC---CCcceEEEEEccCCCE
Q 001190 349 SMD-FHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD---VPISVSRVAWSPDGNY 420 (1128)
Q Consensus 349 ~v~-fspdg~~lla~gs~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~l~~spdg~~ 420 (1128)
.+. ++|||++++++=|..| .|+++|+.+++.+.. .|. .+ -++ -......++|-.++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~------------~k~~~~~~~~~~~~~W~d~~~~ 198 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PI------------TNSGKLLEGKFTYPTWINKDTI 198 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CB------------CTTCCBCCEETCCEEEEETTEE
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-cc------------cccccccccccceeeEECCCEE
Confidence 444 8999996666544433 899999999987642 110 00 000 0001233467633333
Q ss_pred EEEE----------eCCCeEEEEEccCCCcceeceeecccccce-eEEEEecCCCe---EEEEEecCC---CeEEEEecC
Q 001190 421 VGVA----------FTKHLIQLYSYAGSNDLRQHSQIDAHVGAV-NDLAFAYPNKL---LCVVTCGDD---KLIKVWELS 483 (1128)
Q Consensus 421 las~----------~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v-~~l~fs~d~~~---~~l~s~s~d---~~i~vWd~~ 483 (1128)
+++. +....|+.|.+-+...-.. ..+.+....+ .....+++++. ..+++.+.+ ..+.+.|..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 277 (711)
T 4hvt_A 199 IFNLVLHKNEITSSLYPNSLYIWKRGESIEKAK-KLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTK 277 (711)
T ss_dssp EECCCCSTTCBCTTSSBCEEEEEETTSCGGGCE-EEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECS
T ss_pred EEEeCCCCCCcCcCCCCCEEEEEECCCChHHCe-EEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCC
Confidence 3321 1124588887766432111 1243433333 23445667763 135544322 345555633
Q ss_pred ---CCeEEEecCCCCCeEEEeccCCCCccEEEEE----------eccCcEEEEecCCCC-------ceee-ec-CCCCeE
Q 001190 484 ---GRKLFNFEGHEAPVYSICPHHKENIQFIFST----------AIDGKIKAWLYDTMG-------SRVD-YD-APGHWC 541 (1128)
Q Consensus 484 ---g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~~wd~~~~~-------~~~~-~~-~~~~~i 541 (1128)
++ +..+....... +..+. ++.+++.. ...+.|...++.... .... +. .....+
T Consensus 278 ~~~~~-~~~l~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 352 (711)
T 4hvt_A 278 YKNLK-LQKINMPSDAT--LQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVF 352 (711)
T ss_dssp SSSCE-EEECCSCTTCE--EEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEE
T ss_pred CCCCc-ceEeecCCcce--EeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeE
Confidence 43 23332222211 11111 33444422 245778888887631 1222 22 234467
Q ss_pred EEEEEcCCCCeEEEeeeccCCCceEEEEeCCCCc-eeeE-eccccCCceeEEEEeCCCCEEE-EEE---CCCcEEEEECC
Q 001190 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRT-YAGFRKKSNGVVQFDTTQNHFL-AVG---EDSQIKFWDMD 615 (1128)
Q Consensus 542 ~~~~~s~~g~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~-~~s---~dg~i~iwd~~ 615 (1128)
..+.+..+ ..+++.. .++...+.+++..+++ .... +.......+......+++..++ +.+ .-+.++.+|+.
T Consensus 353 ~~~~~~~~-~l~~~~~--~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 353 NFISTTKD-RVFLATY--DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEECSS-CEEEEEE--ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEECC-EEEEEEE--ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 78888876 3444433 2345678888877664 2333 3222223455566666665444 333 34678888876
Q ss_pred CCe
Q 001190 616 NVN 618 (1128)
Q Consensus 616 ~~~ 618 (1128)
++
T Consensus 430 -~~ 431 (711)
T 4hvt_A 430 -HE 431 (711)
T ss_dssp -SC
T ss_pred -Cc
Confidence 44
No 353
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=92.41 E-value=0.13 Score=46.29 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=43.9
Q ss_pred hHHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccchhh
Q 001190 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQ 129 (1128)
Q Consensus 71 ~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 129 (1128)
+++|.|+-+.||||+..|..++|..|+.+.-.-+... .+.+++|..+....+..+++.
T Consensus 32 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~ 89 (138)
T 2j4b_A 32 PLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNF 89 (138)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHH
Confidence 3999999999999999999999999998755545445 777888877766555544433
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.17 E-value=22 Score=39.66 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=60.0
Q ss_pred CeeEEEeccCCC--eEEEEeCCeEEEEECCCce---EEEEee---------CCCCCeeEEEEcCC---CCCEEEEEeCC-
Q 001190 833 AVPCIALSKNDS--YVMSATGGKISLFNMMTFK---VMTTFM---------SPPPASTFLAFHPQ---DNNIIAIGTED- 894 (1128)
Q Consensus 833 ~v~~~~~s~dg~--~la~~~dg~i~vwd~~~~~---~~~~~~---------~~~~~v~~l~~s~~---d~~~lasg~~d- 894 (1128)
....|+|.|||. ++++-..|.|++++..... .+..+. ........|+|+|+ ++.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 357899999995 6665558999999754321 222221 11356788999992 24444443321
Q ss_pred -----------CcEEEEecccc----------eeeeccc----ccccCeeEEEEcCCCCEEEEEcCCC
Q 001190 895 -----------STIHIYNVRVD----------EVKSKLK----GHQKRITGLAFSTSLNILVSSGADA 937 (1128)
Q Consensus 895 -----------g~v~iwd~~~~----------~~~~~l~----~h~~~V~~l~~s~d~~~l~s~~~Dg 937 (1128)
..|.-|.+..+ +.+..+. .|. ...|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCCCC
Confidence 13444555321 2222221 243 56899999999888776543
No 355
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.07 E-value=5.7 Score=47.48 Aligned_cols=199 Identities=12% Similarity=0.116 Sum_probs=104.8
Q ss_pred cCCCeEEEEe-C----CeEEEEECCCceEEEEe-e-----CCCC--CeeEEEEcCCCCCEEEEEeCCC------cEEEEe
Q 001190 841 KNDSYVMSAT-G----GKISLFNMMTFKVMTTF-M-----SPPP--ASTFLAFHPQDNNIIAIGTEDS------TIHIYN 901 (1128)
Q Consensus 841 ~dg~~la~~~-d----g~i~vwd~~~~~~~~~~-~-----~~~~--~v~~l~~s~~d~~~lasg~~dg------~v~iwd 901 (1128)
.++.+++.|+ + +.+.+||..+.+-...- . .... .-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5667777775 2 34889998876543322 1 1111 223344433 567888887543 588899
Q ss_pred cccce--eeecccccccCeeEEEEcCCCCEEEEEcCCC--cEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC-CC
Q 001190 902 VRVDE--VKSKLKGHQKRITGLAFSTSLNILVSSGADA--QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QV 976 (1128)
Q Consensus 902 ~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-~~ 976 (1128)
..+.+ .+..+......- +++...++++++.||.++ .+.+||..+.+-........... .......+.+..+ ++
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~-~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQ-NSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGG-SCCBSCEEEEETTTTE
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCC-cccceeEEEEeCCCCE
Confidence 88753 332222111111 223324788888888765 68999998754211110000000 0022334555655 56
Q ss_pred EEEEEe---c-----CeEEEEecCCccc-----ccccccCCCCCCCeEEEEEeeCCCEEEEEec--------CCcEEEEe
Q 001190 977 RMLVVH---E-----TQLAIYDASKMER-----IRQWTPQDALSAPISCAVYSCNSQLVFATFC--------DGNIGVFD 1035 (1128)
Q Consensus 977 ~l~~~~---d-----~~i~v~d~~~~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~--------dg~i~vwd 1035 (1128)
.++.|. + ..+.+||+.+... ...+.........-.+++...++++++.|+. ...|.+||
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 666653 2 3588999987761 1111100000111123333444787777774 34699999
Q ss_pred cCCCceE
Q 001190 1036 ADTLRLR 1042 (1128)
Q Consensus 1036 ~~~~~~~ 1042 (1128)
+.+++-.
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9988765
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.04 E-value=16 Score=37.73 Aligned_cols=183 Identities=10% Similarity=0.060 Sum_probs=96.3
Q ss_pred CeeEEEeccCCCeEEEEeCCeEEEEECCCceEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeeccc
Q 001190 833 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 912 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~ 912 (1128)
.|..++...+-..++ .||.|..|-....-.+..-..-...|..++... ...+.-. ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 466666543333333 378888886543211111001123577777653 3444445 9999999765432221111
Q ss_pred ccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecC
Q 001190 913 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1128)
Q Consensus 913 ~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~ 992 (1128)
.....|..++...+...+ -. ||.|..|-.....++.. +.. ....+..++.-.+...+ . .++.++.|=..
T Consensus 138 ~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gqlg~-p~~-----~~~~v~~i~~G~~hs~a-l-~~G~v~~wG~n 206 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQTTV-PAE-----AQSGVDDVAGGIFHSLA-L-KDGKVIAWGDN 206 (282)
T ss_dssp GGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTTSC-CGG-----GGSSEEEEEECSSEEEE-E-ETTEEEEEECC
T ss_pred cCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCCCC-cee-----cCCCeEEEEecCCEEEE-E-ECCeEEEEECC
Confidence 233567777665443222 33 79999998765433321 110 01345666655544443 4 79999999766
Q ss_pred CcccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCC
Q 001190 993 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 993 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
....+..-... ...|..++-..+ +.+.-. ||.|+.|-...
T Consensus 207 ~~gqlg~p~~~---~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 207 RYKQTTVPTEA---LSGVSAIASGEW--YSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp TTSTTCCCGGG---GSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred CCCCCCCCccc---CCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence 54433221111 345666665433 333333 99999997654
No 357
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=90.00 E-value=0.2 Score=45.56 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=38.5
Q ss_pred hHHHHHHHhHHhHhhccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccc
Q 001190 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRE 126 (1128)
Q Consensus 71 ~~~~~i~~~~~~ell~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 126 (1128)
+++|.|+-|.||||+..+ .++|..|+.+.-.-+.....+.+++|..+....+..+
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~ 88 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKE 88 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhh
Confidence 399999999999999999 9999999976544332333455555555544443333
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.99 E-value=2.6 Score=45.44 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=86.1
Q ss_pred cEEEEECCCC--cccceeEEeecCCCCCCCccEEEEc---CC----CCEEEEEe--cCeEEEEecCCcccccccc----c
Q 001190 938 QLCVWSIDTW--EKRKSVTIHIPAGKTPTGDTRVQFN---AD----QVRMLVVH--ETQLAIYDASKMERIRQWT----P 1002 (1128)
Q Consensus 938 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~v~~s---~d----~~~l~~~~--d~~i~v~d~~~~~~~~~~~----~ 1002 (1128)
.|.+||+.++ +.++...+........+....+++. |+ +.++.+++ ...|.|||+.+++.-+... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667777777 6666555542222223556777777 22 44555554 6789999999987755442 1
Q ss_pred CC-------C----CCCCeEEEEEeeC----CCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCC-ccceEE
Q 001190 1003 QD-------A----LSAPISCAVYSCN----SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ-TVYPLV 1066 (1128)
Q Consensus 1003 ~~-------~----h~~~v~~l~~s~d----g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 1066 (1128)
.. + -...+..+++||+ ++.|+-....+ -++|.+.+.-+... ........+|... ..-...
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~---~~~~~v~~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQK---GGKLNPELLGNRGKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSST---TCCCCCEEEEECCTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCc---chhhceEEeeecCCCCCcce
Confidence 10 0 0247889999998 77777665444 24444433111000 0000011111111 122245
Q ss_pred EEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1067 VAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1067 ~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
+++.+.++.++++--..+.|..|+...
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 666654688888888889999998865
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.85 E-value=28 Score=37.38 Aligned_cols=155 Identities=9% Similarity=0.138 Sum_probs=87.9
Q ss_pred eEEEEECCCc--eEEEEeeCC------CCCeeEEEEc---CC--C-CCE-EEEEeCCCcEEEEecccceeeecccccccC
Q 001190 853 KISLFNMMTF--KVMTTFMSP------PPASTFLAFH---PQ--D-NNI-IAIGTEDSTIHIYNVRVDEVKSKLKGHQKR 917 (1128)
Q Consensus 853 ~i~vwd~~~~--~~~~~~~~~------~~~v~~l~~s---~~--d-~~~-lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 917 (1128)
+|.+||+.+. +.++++.-. ...+..+++. +. . +.+ .++-...+.|.|+|+.+++.-+.+ |..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG-
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC-
Confidence 4667888887 777766532 2346777877 21 1 223 333345678999999998876655 211
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCC----CCEEEEEecCeEEEEecCC
Q 001190 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD----QVRMLVVHETQLAIYDASK 993 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d----~~~l~~~~d~~i~v~d~~~ 993 (1128)
|.|+.....+. +|.-.-| . ..+..++.+|+ +++|....-..-++|.+.+
T Consensus 201 -----~~pd~~~~~~i--~G~~~~~-------------~-------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T 253 (381)
T 3q6k_A 201 -----FKAERPTKFDY--GGKEYEF-------------K-------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNT 253 (381)
T ss_dssp -----GSCCSCEEEEE--TTEEEEE-------------C-------CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEH
T ss_pred -----CccccCcceEE--CCEEeEe-------------c-------cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEH
Confidence 34542111111 2322212 1 45778899998 7888776544455555542
Q ss_pred c-----c---cccccccCCCCCCCeEEEEEe-eCCCEEEEEecCCcEEEEecCC
Q 001190 994 M-----E---RIRQWTPQDALSAPISCAVYS-CNSQLVFATFCDGNIGVFDADT 1038 (1128)
Q Consensus 994 ~-----~---~~~~~~~~~~h~~~v~~l~~s-~dg~~l~t~~~dg~i~vwd~~~ 1038 (1128)
. . .+..+-. .+-...-..+++. .+|.++++--..+.|..|+..+
T Consensus 254 ~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 254 KELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp HHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred HHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 1 1 1111111 1001334456665 5677777777889999999875
No 360
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.36 E-value=32 Score=37.44 Aligned_cols=262 Identities=11% Similarity=-0.013 Sum_probs=120.0
Q ss_pred CCCeeEEEecc--CCCeEEEEeCC----eEEEEECCCceEEEEeeC--------------CCCCeeEEEEcCCC-CCEEE
Q 001190 831 EEAVPCIALSK--NDSYVMSATGG----KISLFNMMTFKVMTTFMS--------------PPPASTFLAFHPQD-NNIIA 889 (1128)
Q Consensus 831 ~~~v~~~~~s~--dg~~la~~~dg----~i~vwd~~~~~~~~~~~~--------------~~~~v~~l~~s~~d-~~~la 889 (1128)
...|.++++.| ++.+++.+..| .|... .+.++.-..+.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 56666666554 34333 222322222111 11247789998743 44555
Q ss_pred EEeCCCcEEEEecc--cceeeecccc----------------cccCeeEEEEcCC-CCEEEEEcCCCcEEEEECCCCccc
Q 001190 890 IGTEDSTIHIYNVR--VDEVKSKLKG----------------HQKRITGLAFSTS-LNILVSSGADAQLCVWSIDTWEKR 950 (1128)
Q Consensus 890 sg~~dg~v~iwd~~--~~~~~~~l~~----------------h~~~V~~l~~s~d-~~~l~s~~~Dg~i~iwd~~~~~~~ 950 (1128)
.+...+.|...+-. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+ +.|+.-
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW 211 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDW 211 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSC
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCc
Confidence 55556655544311 1122221111 1235788999873 33344343344333322 222211
Q ss_pred ceeEEeecCCC-------CCCCccEEEEcCC-CCEEEEEecCeEEEEecCCcccccccccCCCC--CCCeEEEEEee-CC
Q 001190 951 KSVTIHIPAGK-------TPTGDTRVQFNAD-QVRMLVVHETQLAIYDASKMERIRQWTPQDAL--SAPISCAVYSC-NS 1019 (1128)
Q Consensus 951 ~~~~~~~~~~~-------~~~~v~~v~~s~d-~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h--~~~v~~l~~s~-dg 1019 (1128)
........... ....+..++++|+ ...+.++..+.|...+- .++....+...... ...+.+++++| +.
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~ 290 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDP 290 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCT
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCC
Confidence 11100000000 0123678899886 35666666666555442 23222222110000 13456788876 33
Q ss_pred CEEEEEec-----------CCcEEEEecCC-CceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEE
Q 001190 1020 QLVFATFC-----------DGNIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVK 1087 (1128)
Q Consensus 1020 ~~l~t~~~-----------dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~ 1087 (1128)
..|+++.. ++...||.... |+....+.. .++... .-.......++++|.++..|..++.++.|
T Consensus 291 ~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~--glp~~~--~~~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 291 RTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR--GLPTDQ--AWLTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp TCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB--TSCCSS--CCCCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC--CCCCcc--ccceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 34444432 33345665544 444444331 111100 00001123577888666667777666654
Q ss_pred EEcCCCCCCCcccC
Q 001190 1088 VMEPSESEGKWGVS 1101 (1128)
Q Consensus 1088 iWd~~~~~~~w~~~ 1101 (1128)
|.-.++...|...
T Consensus 366 -~~S~D~G~tW~~~ 378 (394)
T 3b7f_A 366 -WASADEGEHWQCI 378 (394)
T ss_dssp -EEESSTTSBCEEE
T ss_pred -EEECCCCCCceEc
Confidence 4445555568764
No 361
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=85.61 E-value=34 Score=40.58 Aligned_cols=241 Identities=7% Similarity=0.005 Sum_probs=116.4
Q ss_pred EEE-EccCCCEEEEE-eCC----CeEEEEEccCCCcceeceeec-cccc------ceeEEEEecCCCeEEEEEec-----
Q 001190 411 RVA-WSPDGNYVGVA-FTK----HLIQLYSYAGSNDLRQHSQID-AHVG------AVNDLAFAYPNKLLCVVTCG----- 472 (1128)
Q Consensus 411 ~l~-~spdg~~las~-~~d----~~i~vwd~~~~~~~~~~~~~~-~h~~------~v~~l~fs~d~~~~~l~s~s----- 472 (1128)
.+. ++||+++++.+ +.. ..++++|+.+++.+.-. +. .-+. ....++|..++. ++++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~ 208 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNE 208 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCE--EEEEeCCCCCC
Confidence 344 88999988865 222 35999999998765421 22 0000 124458874444 444321
Q ss_pred -----CCCeEEEEe-cCC--CeEEEecCCCCCe-EEEeccCCCCcc---EEEEEecc---CcEEEEecCCCCce-eeecC
Q 001190 473 -----DDKLIKVWE-LSG--RKLFNFEGHEAPV-YSICPHHKENIQ---FIFSTAID---GKIKAWLYDTMGSR-VDYDA 536 (1128)
Q Consensus 473 -----~d~~i~vWd-~~g--~~~~~~~~h~~~v-~~~~~~~~~~~~---~l~s~~~d---g~i~~wd~~~~~~~-~~~~~ 536 (1128)
....|+.|. -+. +-...+.+....+ .+...+.++... .+++.+.+ ..+.+.+.+..... ..+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 124677887 221 1223344433333 223333333222 34443322 34445554432222 33333
Q ss_pred CCCeEEEEEEcCCCCeEEEeeec------cCCCceEEEEeCCCCc-------eeeE-eccccCCceeEEEEeCCCCEEEE
Q 001190 537 PGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNESEGT-------IKRT-YAGFRKKSNGVVQFDTTQNHFLA 602 (1128)
Q Consensus 537 ~~~~i~~~~~s~~g~~l~~~~~~------~~~~~~i~~wd~~~~~-------~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 602 (1128)
..... +..+.++.+++....+ .-..+.|...|+.++. ..+. +.......+..+.+..+ ..+++
T Consensus 289 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDAT--LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTCE--EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcce--EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 33211 2334556555533211 0136678888887642 1222 43334435666777764 55666
Q ss_pred EECCC--cEEEEECCCCe-eeEE-EecCCCCCCcceEEEcCCCCEE-EEEEc---CCcEEEEEcc
Q 001190 603 VGEDS--QIKFWDMDNVN-ILTS-TDAEGGLPNLPRLRFSKEGNLL-AVTTA---DNGFKILANA 659 (1128)
Q Consensus 603 ~s~dg--~i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~sp~~~~l-~~~~~---dg~i~iw~~~ 659 (1128)
...++ .|+++++.++. .... +.... ...+.....++++..+ ++.+. -+.+..+++.
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 66665 46777776665 2233 33322 1235555566665443 33332 2456556554
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=78.51 E-value=79 Score=34.21 Aligned_cols=236 Identities=7% Similarity=-0.018 Sum_probs=108.1
Q ss_pred CcceEEEEEcc--CCCEEEEEeCCC----eEEEEEccCCCcceecee---ecc--------cccceeEEEEecC--CCeE
Q 001190 406 PISVSRVAWSP--DGNYVGVAFTKH----LIQLYSYAGSNDLRQHSQ---IDA--------HVGAVNDLAFAYP--NKLL 466 (1128)
Q Consensus 406 ~~~V~~l~~sp--dg~~las~~~d~----~i~vwd~~~~~~~~~~~~---~~~--------h~~~v~~l~fs~d--~~~~ 466 (1128)
...|.+|++.| ++...|. +..| .|.. ..+.|+....... +.. +...|.++++.|. ..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g-~~~g~~g~gl~~-s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-- 129 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMA-ARTGHLGPTVFR-SDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG-- 129 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEE-EEC--CCEEEEE-ESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--
T ss_pred CCceEEEEECCCCCCeEEEE-ecCCCCCccEEE-eCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--
Confidence 35799999999 5555544 4343 3332 2233433322111 111 1235788999872 34
Q ss_pred EEEEecCCCeEEEEecCCCeEEEecC-------------------CCCCeEEEeccCCCCccEEEEEeccCcEEEEecCC
Q 001190 467 CVVTCGDDKLIKVWELSGRKLFNFEG-------------------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1128)
Q Consensus 467 ~l~s~s~d~~i~vWd~~g~~~~~~~~-------------------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 527 (1128)
.++.+...+.|...+..|+.-..+.. ....+.+|.+.+...+ .++.+..++.|... ..
T Consensus 130 ~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~-~l~vg~~~ggl~~s--~D 206 (394)
T 3b7f_A 130 TWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK-HLYIGMSSGGVFES--TD 206 (394)
T ss_dssp CEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT-CEEEEEETBEEEEE--SS
T ss_pred EEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC-EEEEEECCCCEEEE--CC
Confidence 34555555666555444443222211 1235778888764333 34445444444332 33
Q ss_pred CCceeeecCC--------------CCeEEEEEEcCC-CCeEEEeeeccCCCceEEEEeCCCCceeeEecc-ccC---Cce
Q 001190 528 MGSRVDYDAP--------------GHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG-FRK---KSN 588 (1128)
Q Consensus 528 ~~~~~~~~~~--------------~~~i~~~~~s~~-g~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~---~~v 588 (1128)
.......... ...+.++.+.|+ ...++++. .+.|...+- .++.-..+.. ... ..+
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-----~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~ 280 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-----HCGIYRMDR-REGVWKRIGDAMPREVGDIG 280 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-----TTEEEEEET-TTTEEECGGGGSCTTTCSCE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-----CCeEEEeCC-CCCcceECCCCCCCCCccce
Confidence 3332221110 134889999986 34555554 333544432 2222222211 111 134
Q ss_pred eEEEEeCC-CCEEEEEEC-----------CCcEEEEECCC-CeeeEEEec--CCCC--CC--cceEEEcCC-CCEEEEEE
Q 001190 589 GVVQFDTT-QNHFLAVGE-----------DSQIKFWDMDN-VNILTSTDA--EGGL--PN--LPRLRFSKE-GNLLAVTT 648 (1128)
Q Consensus 589 ~~~~~~~~-~~~l~~~s~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~--~~--v~~v~~sp~-~~~l~~~~ 648 (1128)
..+.++|. ...++++.. ++...+|.... ++....+.. .... .. ...++++|. ...|+.++
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~ 360 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGT 360 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEEC
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEe
Confidence 55777653 345555532 23344555443 333333321 1100 01 135778874 34566665
Q ss_pred cCCcEE
Q 001190 649 ADNGFK 654 (1128)
Q Consensus 649 ~dg~i~ 654 (1128)
.++.|.
T Consensus 361 ~~g~l~ 366 (394)
T 3b7f_A 361 TGGEIW 366 (394)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 555543
No 363
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=78.32 E-value=28 Score=41.36 Aligned_cols=113 Identities=9% Similarity=-0.061 Sum_probs=61.7
Q ss_pred CCCeEEEeeeccCC--CceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEECCC--cEEEEECCCCeeeEEEe
Q 001190 549 DGSRLFSCGTSKDG--DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTD 624 (1128)
Q Consensus 549 ~g~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~ 624 (1128)
+++.++.||..... -..+.+||..+.+-...-.......-.+++.-.++..++.||.++ .+.+||..+........
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 77777777654322 245888998875433221111111122233324777888887544 79999998877544322
Q ss_pred ---cCCCCCCcceEEEcCC-CCEEEEEEc--C-----CcEEEEEcccC
Q 001190 625 ---AEGGLPNLPRLRFSKE-GNLLAVTTA--D-----NGFKILANAIG 661 (1128)
Q Consensus 625 ---~~~~~~~v~~v~~sp~-~~~l~~~~~--d-----g~i~iw~~~~~ 661 (1128)
.........++.+..+ +++++.|+. + ..+.+||+.+.
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 1111112233555554 667777765 2 34777777665
No 364
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=76.23 E-value=1.1e+02 Score=34.52 Aligned_cols=179 Identities=15% Similarity=0.099 Sum_probs=94.6
Q ss_pred ccccceeEEEEecCCCeEEEEEecCCCe----------------------------EEEEe-cCCCeEEEecCC--CCC-
Q 001190 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKL----------------------------IKVWE-LSGRKLFNFEGH--EAP- 496 (1128)
Q Consensus 449 ~h~~~v~~l~fs~d~~~~~l~s~s~d~~----------------------------i~vWd-~~g~~~~~~~~h--~~~- 496 (1128)
.|-..+....|.-||+. -++....+++ +.|+| .+|+.+.++.-. .+.
T Consensus 176 a~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~ 254 (591)
T 2zux_A 176 AHYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNV 254 (591)
T ss_dssp TTSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCG
T ss_pred cccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcc
Confidence 36667777888888876 4555555554 78999 899988765421 111
Q ss_pred --------------eEEEeccCCCCccEEEEEe---ccCcEEEEecCCCCce--eeecCC-----------CCeEEEEEE
Q 001190 497 --------------VYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGSR--VDYDAP-----------GHWCTTMLY 546 (1128)
Q Consensus 497 --------------v~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~~--~~~~~~-----------~~~i~~~~~ 546 (1128)
..+++.. +.+...++.+- ....+..||.+..+.. +.+... .+......+
T Consensus 255 ~~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDV 333 (591)
T 2zux_A 255 SDWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADV 333 (591)
T ss_dssp GGGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECC
T ss_pred cccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeC
Confidence 2233332 11222333332 1224667777655432 233221 134455555
Q ss_pred cCCCC-eEEEeeeccCCCceEEEEeCCCCceeeEec-cccCCceeEEEEeCCC--CEEEEEECCC----cEEEEECCCCe
Q 001190 547 SADGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYA-GFRKKSNGVVQFDTTQ--NHFLAVGEDS----QIKFWDMDNVN 618 (1128)
Q Consensus 547 s~~g~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~--~~l~~~s~dg----~i~iwd~~~~~ 618 (1128)
.-||+ -|+.++.- +| ..|+.+.... +|.+ .+....|.|+. -.++.+.+++ ...+.|..+|+
T Consensus 334 DgDG~dEIv~Gs~~---------iD-~dG~~L~st~~gHGD-a~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~ 402 (591)
T 2zux_A 334 DGDGKDEIIFGSMA---------VD-HDGKGMYSTGLGHGD-ALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGK 402 (591)
T ss_dssp SSSSSCEEEETTEE---------EC-TTSCEEEECSCCCCS-CEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCC
T ss_pred CCCCCceEEEeeeE---------EC-CCCCEeeeCCCCCCC-eeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCc
Confidence 66665 33333321 22 2333333333 4443 66777788773 4666666541 45568999999
Q ss_pred eeEEEecCCCCCCcceEEEcCC
Q 001190 619 ILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
.+.........+......|.|+
T Consensus 403 vlw~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 403 ILWGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp EEEEECCSSCCCCEEEECCCTT
T ss_pred EEEEcCCCCCCCceeEEecCCC
Confidence 9887765433333333445454
No 365
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=72.76 E-value=1.3e+02 Score=33.97 Aligned_cols=68 Identities=16% Similarity=0.058 Sum_probs=38.2
Q ss_pred CCceeeEeccccCCceeEEEEeCC--CCEEEEEECC----CcEEEEECCCCeeeEEEecCCCCCCcceEEEcCC
Q 001190 573 EGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGED----SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1128)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~sp~ 640 (1128)
.|+.+......+...+....|.|+ +-.++.+.++ ....+.|..+|+.+.......+.+......|.|+
T Consensus 355 dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp~ 428 (620)
T 2zuy_A 355 DGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPS 428 (620)
T ss_dssp TSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCTT
T ss_pred CCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecCCC
Confidence 344444333333335666667776 3455555543 2567889999999887765444333344445554
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=72.74 E-value=87 Score=31.89 Aligned_cols=197 Identities=8% Similarity=0.031 Sum_probs=103.5
Q ss_pred CEEEEEeCCCcEEE---EecccceeeecccccccCeeEEEEcC-CCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCC
Q 001190 886 NIIAIGTEDSTIHI---YNVRVDEVKSKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGK 961 (1128)
Q Consensus 886 ~~lasg~~dg~v~i---wd~~~~~~~~~l~~h~~~V~~l~~s~-d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 961 (1128)
..|+.-+.+|.++- |++..+.....+. ....|..+.... +..+++.++.+|.++-..+.... ....-.....-.
T Consensus 36 ~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lk 113 (276)
T 3no0_A 36 EGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLT 113 (276)
T ss_dssp SCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCC
T ss_pred CEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecC
Confidence 34555556666554 3333222111132 345666664421 46789999999999999876543 111111111111
Q ss_pred CCCCccEEEEcCCC-CEEEEEecCeEEEEecCCccc-------ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEE
Q 001190 962 TPTGDTRVQFNADQ-VRMLVVHETQLAIYDASKMER-------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGV 1033 (1128)
Q Consensus 962 ~~~~v~~v~~s~d~-~~l~~~~d~~i~v~d~~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~v 1033 (1128)
....+..+...... ..++.+..|.+..+....-.. +..+.... ...|..+...+++.+++..+..|.++.
T Consensus 114 egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~--~d~vv~~~~~~~~~~ll~~T~~G~~kr 191 (276)
T 3no0_A 114 EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK--NDETSGLRIWNGEPYLLVITAKGRVKK 191 (276)
T ss_dssp TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEEEESSCSEEEEEETTSCEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC--CCEEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 12445555444444 445556688877776543221 11122222 466777776677778999999999999
Q ss_pred EecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEE--EcCCC
Q 001190 1034 FDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV--MEPSE 1093 (1128)
Q Consensus 1034 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~i--Wd~~~ 1093 (1128)
..+.......+-. . ++........+..+.... +...++..+.+|.+.. ++.++
T Consensus 192 ~~~~e~~~~~R~g--k----Gv~~i~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 192 ISHEEIPKTNRGV--K----GTEVSGTKDTLVDLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEGGGSCCCCTTC--C----CEECCCSSSCEEEEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred eEHHHcccCCCCC--c----ceEEEcCCCcEEEEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 8876533221110 0 000001122233333322 3456888888898887 76543
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=70.99 E-value=1e+02 Score=31.96 Aligned_cols=192 Identities=11% Similarity=0.102 Sum_probs=91.1
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCccee------ceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c------
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQ------HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L------ 482 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~------~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~------ 482 (1128)
|+..++++.+.+|.|+--.+.+-+..+. ...+..+ +.+..+....... .|+..+..|.+.-.. .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 4556788889999988766544211110 0011111 2233333333333 233344455544333 1
Q ss_pred ---CCCeEE---EecCCCCCeEEEeccC-CCCccEEEEEeccCcEEEEecCCCC-----cee--eecCCCCeEEEEEEcC
Q 001190 483 ---SGRKLF---NFEGHEAPVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMG-----SRV--DYDAPGHWCTTMLYSA 548 (1128)
Q Consensus 483 ---~g~~~~---~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~~wd~~~~~-----~~~--~~~~~~~~i~~~~~s~ 548 (1128)
.|.++. .+. ....|.++.... ..++.+++..+.+|.++.-.+.... ... .+... ..+..+....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 111111 122 233465554321 1244678899999999988764321 111 12222 3444444433
Q ss_pred CCCeEEEeeeccCCCceEEEEeCCCC-------ceeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCC
Q 001190 549 DGSRLFSCGTSKDGDSFLVEWNESEG-------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1128)
Q Consensus 549 ~g~~l~~~~~~~~~~~~i~~wd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~ 616 (1128)
+...++..+ ..|.+..++...- +-+..+....+..+-.+....++..+++.+..|.++..++..
T Consensus 156 ~~~~i~l~T----~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 156 GEDEVMLFS----AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp TTCEEEEEE----TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred CCCEEEEEC----CCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 444454444 3677777765421 111112222233444444444556788899999988887643
No 368
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=70.36 E-value=1.2e+02 Score=32.63 Aligned_cols=208 Identities=9% Similarity=0.052 Sum_probs=104.1
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-ee----------eeccccc-ccCeeEEEEcCCCCEEEEEcCCCcEEE
Q 001190 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EV----------KSKLKGH-QKRITGLAFSTSLNILVSSGADAQLCV 941 (1128)
Q Consensus 874 ~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~----------~~~l~~h-~~~V~~l~~s~d~~~l~s~~~Dg~i~i 941 (1128)
.+..++++. +....+.-..||.|+.|-.... ++ ...+..- ...|..++.. ....+....||.|..
T Consensus 106 ~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred ceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 455677777 6677777788999999965431 10 0111111 1245555553 345555667899999
Q ss_pred EECCCCccc-------ceeEEeecCCCCCCCccEEEEcC-CCCEEEEEecCeEEEEecCCccccc-----------cccc
Q 001190 942 WSIDTWEKR-------KSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVHETQLAIYDASKMERIR-----------QWTP 1002 (1128)
Q Consensus 942 wd~~~~~~~-------~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~d~~i~v~d~~~~~~~~-----------~~~~ 1002 (1128)
|-....-++ ...+... .......+..++... +...++...++.|+.|=......+. .+..
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v-~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 261 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLV-EALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS 261 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEEC-GGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGG
T ss_pred eCCCCCCCcCCCCCcccccceEe-cccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecc
Confidence 976432111 1111111 111113455555544 3455556678999999654322211 1111
Q ss_pred CCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC-CCCCCCcccCCCCccceEEEEEecCCCCEEEEEE
Q 001190 1003 QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP-STYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL 1081 (1128)
Q Consensus 1003 ~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~ 1081 (1128)
.. ...|..++. -..+.+.-..||.|+.|-....-.+..-.. ....+..+ ..-....+..|+.- ....++..
T Consensus 262 ~~--~~~v~~v~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v-~~l~~~~v~~ia~G---~~h~~al~ 333 (389)
T 3kci_A 262 LT--GLGVVKVEC--GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQV-QGLQGKKVIAIATG---SLHCVCCT 333 (389)
T ss_dssp GT--TSCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEEC-GGGTTCCEEEEEEC---SSEEEEEE
T ss_pred cC--CCcEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEe-ccCCCCCEEEEEec---cCeEEEEC
Confidence 10 234555544 344555566899999997543111000000 00000000 00011234555543 35667778
Q ss_pred CCCcEEEEcCCC
Q 001190 1082 TDGSVKVMEPSE 1093 (1128)
Q Consensus 1082 ~dg~i~iWd~~~ 1093 (1128)
.||+|..|-.-+
T Consensus 334 ~~G~v~~wG~n~ 345 (389)
T 3kci_A 334 EDGEVYTWGDND 345 (389)
T ss_dssp TTCCEEEEECCT
T ss_pred CCCCEEEeeCCC
Confidence 999999996543
No 369
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.55 E-value=53 Score=40.63 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=34.1
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEE
Q 001190 916 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 955 (1128)
Q Consensus 916 ~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~ 955 (1128)
..+.+++..++..++++.+.|+++|+|++.+++++....+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3567778888889999999999999999999988776654
No 370
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=68.29 E-value=1.4e+02 Score=32.44 Aligned_cols=205 Identities=12% Similarity=0.040 Sum_probs=97.8
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecccc-ee----------eeccccc-ccCeeEEEEcCCCCEEEEEcCCCcEEE
Q 001190 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EV----------KSKLKGH-QKRITGLAFSTSLNILVSSGADAQLCV 941 (1128)
Q Consensus 874 ~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~----------~~~l~~h-~~~V~~l~~s~d~~~l~s~~~Dg~i~i 941 (1128)
.|..++. +....+.-..||.|+.|-.... ++ ...+... ...|..++.. ..+.+....||.|..
T Consensus 122 ~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 122 RIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYG 196 (406)
T ss_dssp CEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEE
Confidence 5666665 4456666778999999975432 11 0111111 1245555553 345555678899999
Q ss_pred EECCCCccc-------ceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecCCccccc-----------ccccC
Q 001190 942 WSIDTWEKR-------KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR-----------QWTPQ 1003 (1128)
Q Consensus 942 wd~~~~~~~-------~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~~-----------~~~~~ 1003 (1128)
|-.....++ ...+... .......+..++... ...++...++.|+.|=......+. .+...
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v-~~~~~~~i~~va~G~-~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~ 274 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERV-TSTGGEKMSMVACGW-RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEAL 274 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEEC-CCSTTCCEEEEEECS-SEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGG
T ss_pred eeCCCCCCCCCCCCCCcCccEEe-cccCCceEEEEEECC-CcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEeccc
Confidence 975442211 1111111 111112344443322 233444567888888654332211 11111
Q ss_pred CCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECC
Q 001190 1004 DALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1083 (1128)
Q Consensus 1004 ~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~d 1083 (1128)
. ...|..++- -..+.+.-..||.|+.|=....-.+..-.......+..+.......+..++.- ....++-..|
T Consensus 275 ~--~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G---~~hs~alt~~ 347 (406)
T 4d9s_A 275 S--NSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCG---WRHTLAVTER 347 (406)
T ss_dssp T--TSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEEC---SSEEEEEETT
T ss_pred C--CCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeC---CCeEEEEeCC
Confidence 0 234555543 34455666689999999654311110000000000000000111234555542 3566777889
Q ss_pred CcEEEEcCC
Q 001190 1084 GSVKVMEPS 1092 (1128)
Q Consensus 1084 g~i~iWd~~ 1092 (1128)
|.|..|-.-
T Consensus 348 G~v~~wG~n 356 (406)
T 4d9s_A 348 NNVFAWGRG 356 (406)
T ss_dssp SCEEEEECC
T ss_pred CCEEEecCC
Confidence 999999643
No 371
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=64.93 E-value=1.2e+02 Score=30.69 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=72.7
Q ss_pred CCCCeeEEEecc-CCCeEEEEe-CCeEEEEECCCce------EEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEe
Q 001190 830 LEEAVPCIALSK-NDSYVMSAT-GGKISLFNMMTFK------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 901 (1128)
Q Consensus 830 ~~~~v~~~~~s~-dg~~la~~~-dg~i~vwd~~~~~------~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd 901 (1128)
....|..+.... +..+++..+ +|.++...+.... ....+. ....+..+.... +...++..+.+|.+..+.
T Consensus 66 ~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 66 REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFS 143 (276)
T ss_dssp TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEE
Confidence 456666664421 466777777 8999998876542 112222 234555555555 556788888999988887
Q ss_pred cccc---------eeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCC
Q 001190 902 VRVD---------EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 946 (1128)
Q Consensus 902 ~~~~---------~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~ 946 (1128)
...- ...-.+.. .+.|.++...+++..++..+..|.++...+..
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred hhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 6431 12222332 35677766666677888899999999888754
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=63.49 E-value=1.5e+02 Score=31.04 Aligned_cols=159 Identities=9% Similarity=0.084 Sum_probs=91.0
Q ss_pred CCCCeeEEEecc---CCCeEEEEe-CCeEEEEECCCceE-------EEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 001190 830 LEEAVPCIALSK---NDSYVMSAT-GGKISLFNMMTFKV-------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 898 (1128)
Q Consensus 830 ~~~~v~~~~~s~---dg~~la~~~-dg~i~vwd~~~~~~-------~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~ 898 (1128)
....|..+..-+ +..+++..+ +|.++.-.+..... ...+.. ...+..+.... +...|+..+..|.+.
T Consensus 93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~ 170 (327)
T 3uc1_A 93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSI 170 (327)
T ss_dssp TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEE
T ss_pred CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEE
Confidence 345565554333 467777777 89999887765332 122332 34455555554 456677888899988
Q ss_pred EEecc--c---------ceeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCccc-----ceeEEeecCCCC
Q 001190 899 IYNVR--V---------DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR-----KSVTIHIPAGKT 962 (1128)
Q Consensus 899 iwd~~--~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~-----~~~~~~~~~~~~ 962 (1128)
.+... . |...-.+. ..+.|.++...+++.+|+.++..|.++.-.+...... ....+.... .
T Consensus 171 rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~-~- 247 (327)
T 3uc1_A 171 RFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDR-R- 247 (327)
T ss_dssp EEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCT-T-
T ss_pred EEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecC-C-
Confidence 88776 2 11112232 2356777777666778999999999998877543321 111111111 0
Q ss_pred CCCccEEEE-cCCCCEEEEEecCeEEEEecCC
Q 001190 963 PTGDTRVQF-NADQVRMLVVHETQLAIYDASK 993 (1128)
Q Consensus 963 ~~~v~~v~~-s~d~~~l~~~~d~~i~v~d~~~ 993 (1128)
...+..+.. ..+...++++.+|.+.-++...
T Consensus 248 ~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 248 RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 123333333 3444555566677777777653
No 373
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=62.86 E-value=32 Score=42.58 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=36.2
Q ss_pred CCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCC
Q 001190 1007 SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPS 1048 (1128)
Q Consensus 1007 ~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 1048 (1128)
...+.+++..+|..++++-+.|++++||++.+++++......
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 345677888889999999999999999999999999887643
No 374
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=57.26 E-value=1.9e+02 Score=30.24 Aligned_cols=160 Identities=9% Similarity=0.028 Sum_probs=82.6
Q ss_pred CCCeEEEeccC-CCCccEEEEEeccCcEEEEecCCCCc-----ee--eecCCCCeEEEEEEcCCCCeEEEeeeccCCCce
Q 001190 494 EAPVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMGS-----RV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1128)
Q Consensus 494 ~~~v~~~~~~~-~~~~~~l~s~~~dg~i~~wd~~~~~~-----~~--~~~~~~~~i~~~~~s~~g~~l~~~~~~~~~~~~ 565 (1128)
...|.++.... .++..+++..+.+|.|+.-.+..... .. .+.. +..+..+........++..+ ..|.
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T----~~G~ 168 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVS----ANGQ 168 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEE----TTSE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEE----CCCe
Confidence 34555553322 22457999999999999887654221 11 2222 33444444444445555555 3777
Q ss_pred EEEEeCC--CC----c---eeeEeccccCCceeEEEEeCCCCEEEEEECCCcEEEEECCCCee-------eEEEecCCCC
Q 001190 566 LVEWNES--EG----T---IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-------LTSTDAEGGL 629 (1128)
Q Consensus 566 i~~wd~~--~~----~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~-------~~~~~~~~~~ 629 (1128)
+..+... .- + -+..+.-..+..+..+...+++.+++.++..|.++.-.+..... +..+......
T Consensus 169 ~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~ 248 (327)
T 3uc1_A 169 SIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR 248 (327)
T ss_dssp EEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT
T ss_pred EEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC
Confidence 7777665 21 1 11112222233455554445567899999999998887644322 1122221111
Q ss_pred CCcceEEEcCCCCEEEEEEcCCcEEEEEc
Q 001190 630 PNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1128)
Q Consensus 630 ~~v~~v~~sp~~~~l~~~~~dg~i~iw~~ 658 (1128)
..+..+....+...++..+.+|.+.-+..
T Consensus 249 d~lv~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 249 GRLVGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp CSEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred CeEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 23333333333345555566666555544
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=56.80 E-value=1.2e+02 Score=35.39 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=30.3
Q ss_pred eEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCC
Q 001190 1010 ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1047 (1128)
Q Consensus 1010 v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1047 (1128)
|.++ ..+..++++-+.|.++++|+++++.++.....
T Consensus 224 Is~~--~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCK--LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEE--EETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEe--ccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4444 34688999999999999999999998888775
No 376
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=55.29 E-value=11 Score=29.80 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHhcCCCc
Q 001190 7 ELVFLILQFLEEEKFKESVHKLEKESGFFF 36 (1128)
Q Consensus 7 e~~rli~q~L~~~g~~~s~~~L~~Es~~~~ 36 (1128)
-+.-||..||.=.||+-|+..|+-|+|.+-
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~~ 49 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTLQ 49 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCCC
Confidence 467899999999999999999999999973
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=52.70 E-value=21 Score=40.96 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=44.5
Q ss_pred CCccEEEEcCCCCEEEEEec-------------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe
Q 001190 964 TGDTRVQFNADQVRMLVVHE-------------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 964 ~~v~~v~~s~d~~~l~~~~d-------------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
...-.|+|+|+|.+++..+. ..+.+.+..+++..+.+..+. ..+++.++|+||++.|++.-
T Consensus 476 ~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred cCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEEE
Confidence 45567999999996655331 235666666777666665554 78999999999999988764
No 378
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=51.50 E-value=26 Score=39.62 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=43.9
Q ss_pred CCccEEEEcCCCCEEEEEec-------------CeEEEEecCCcccccccccCCCCCCCeEEEEEeeCCCEEEEEe
Q 001190 964 TGDTRVQFNADQVRMLVVHE-------------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 1026 (1128)
Q Consensus 964 ~~v~~v~~s~d~~~l~~~~d-------------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~ 1026 (1128)
.....|+|+++|.+.+..+. ..+..++..+++..+.+.... ...++.++||||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEEE
Confidence 56678999999987775432 156677776776655444332 56789999999999988865
No 379
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=49.92 E-value=2.6e+02 Score=29.73 Aligned_cols=192 Identities=8% Similarity=0.072 Sum_probs=106.6
Q ss_pred cCCCeEEEEe-CCeEEEEECCCc---------eEEEEeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc------
Q 001190 841 KNDSYVMSAT-GGKISLFNMMTF---------KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV------ 904 (1128)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~~~~---------~~~~~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~------ 904 (1128)
++..++++.+ +|.|+--.+.+. .....++ ....+..+.... ....|+..+..|.++-+....
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 5666777777 788887654321 1222333 344555555555 556677777888877665431
Q ss_pred ---ceeeec---ccccccCeeEEEEcC---CCCEEEEEcCCCcEEEEECCCCcccc---eeEEeecCCCCCCCccEEEEc
Q 001190 905 ---DEVKSK---LKGHQKRITGLAFST---SLNILVSSGADAQLCVWSIDTWEKRK---SVTIHIPAGKTPTGDTRVQFN 972 (1128)
Q Consensus 905 ---~~~~~~---l~~h~~~V~~l~~s~---d~~~l~s~~~Dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~v~~v~~s 972 (1128)
|..+.. +. ....|.++.... ++.+|+.++..|.++--.+....... ...+.... ...+..+...
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~---~d~lv~v~~~ 158 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE---GDALVGVALT 158 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT---TCCEEEEEEE
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC---CCEEEEEEEe
Confidence 222222 22 234566655432 45689999999999998875433211 11111111 2344444443
Q ss_pred -CCCCEEEEEecCeEEEEecCCccc-------ccccccCCCCCCCeEEEEEee---------------------------
Q 001190 973 -ADQVRMLVVHETQLAIYDASKMER-------IRQWTPQDALSAPISCAVYSC--------------------------- 1017 (1128)
Q Consensus 973 -~d~~~l~~~~d~~i~v~d~~~~~~-------~~~~~~~~~h~~~v~~l~~s~--------------------------- 1017 (1128)
.+...++++..|.+..+....-.. ++.+.... ...|.++...+
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~--~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~ 236 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAK--GEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPA 236 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEEEECCC-------------------------
T ss_pred CCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCC--CCEEEEEEEecccccccccccccccccccccccccccc
Confidence 344455556678877777653221 22222221 45666665554
Q ss_pred --------CCCEEEEEecCCcEEEEecCCCc
Q 001190 1018 --------NSQLVFATFCDGNIGVFDADTLR 1040 (1128)
Q Consensus 1018 --------dg~~l~t~~~dg~i~vwd~~~~~ 1040 (1128)
++.+|++.+..|..+...+..-.
T Consensus 237 ~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~ 267 (370)
T 3l6v_A 237 VIDVADNGDVAYILTATENGYGKRTPLAEYP 267 (370)
T ss_dssp ----------CEEEEEETTSEEEEEEGGGSC
T ss_pred ccccccccCCceEEEeeCCCCEEEEEHHHhc
Confidence 45688999999999988876543
No 380
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=48.90 E-value=2.7e+02 Score=29.61 Aligned_cols=149 Identities=11% Similarity=0.141 Sum_probs=73.5
Q ss_pred ccCCCEEEEEeCCCeEEEEEccCCC-------cceeceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe----c-
Q 001190 415 SPDGNYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE----L- 482 (1128)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~-------~~~~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd----~- 482 (1128)
-|+..++++.+.+|.|+--.+..-+ -+... .+. ....+..+....... .|+..+..|.+.-.. .
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~-~lk-e~D~l~~~~~~~t~d--~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAA-STK-EEDFIDQLWLVNTHD--TLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEE-ECS-CCCCEEEEEEECTTC--EEEEEETTSEEEEEEGGGSCB
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceec-ccC-CCCEEEEEEEecCCC--EEEEEeCCCeEEEEEHHHCcC
Confidence 3677889999999999876654311 11110 121 233444444444444 233344456554433 1
Q ss_pred -----CCCeEEE---ecCCCCCeEEEeccCC-CCccEEEEEeccCcEEEEecCCCCc-----eeeecC-CCCeEEEEEEc
Q 001190 483 -----SGRKLFN---FEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS-----RVDYDA-PGHWCTTMLYS 547 (1128)
Q Consensus 483 -----~g~~~~~---~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~-~~~~i~~~~~s 547 (1128)
.|..+.. +. ....|.++..... .++.+|+.++..|.++...+..... ...+.. .+..+..+...
T Consensus 80 ~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~ 158 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALT 158 (370)
T ss_dssp CCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEE
T ss_pred CCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEe
Confidence 1211111 22 2345655543221 2346899999999999887643221 211211 22333334333
Q ss_pred CCCCeEEEeeeccCCCceEEEEeCC
Q 001190 548 ADGSRLFSCGTSKDGDSFLVEWNES 572 (1128)
Q Consensus 548 ~~g~~l~~~~~~~~~~~~i~~wd~~ 572 (1128)
.....++..+ ..|.+..++..
T Consensus 159 ~~~~~i~l~T----~~G~~irf~~~ 179 (370)
T 3l6v_A 159 DGDRDVLLFA----SNGKTVRFGES 179 (370)
T ss_dssp CSCCEEEEEE----TTSEEEEEEGG
T ss_pred CCCceEEEEe----CCCeEEEEEcc
Confidence 3444455444 26666666543
No 381
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=47.11 E-value=2.6e+02 Score=28.83 Aligned_cols=240 Identities=10% Similarity=0.085 Sum_probs=121.1
Q ss_pred CCCeEEEEe-CCeEEEEECCCceEEE---------EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc-------
Q 001190 842 NDSYVMSAT-GGKISLFNMMTFKVMT---------TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV------- 904 (1128)
Q Consensus 842 dg~~la~~~-dg~i~vwd~~~~~~~~---------~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~------- 904 (1128)
+..++++.+ +|.|+--.+.+.+... .++ ....+..+.... ....|+..+..|.++-+....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 445566666 7888776665433211 112 223344444443 445666777788876665432
Q ss_pred --ceeee---cccccccCeeEEEEc---CCCCEEEEEcCCCcEEEEECCCCcccc---eeEEeecCCCCCCCccEEEE-c
Q 001190 905 --DEVKS---KLKGHQKRITGLAFS---TSLNILVSSGADAQLCVWSIDTWEKRK---SVTIHIPAGKTPTGDTRVQF-N 972 (1128)
Q Consensus 905 --~~~~~---~l~~h~~~V~~l~~s---~d~~~l~s~~~Dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~v~~v~~-s 972 (1128)
|..+. .+. ....|.++..- .++.+++.++.+|.++--.+....... ...+....+ ..+..+.. .
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~---d~lv~~~~~~ 155 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG---DELIGVDLTS 155 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT---CCEEEEEEEC
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC---CEEEEEEEeC
Confidence 22221 122 23456666442 345688899999999998775432211 111111111 33444433 4
Q ss_pred CCCCEEEEEecCeEEEEecCCccc-------ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEe
Q 001190 973 ADQVRMLVVHETQLAIYDASKMER-------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1045 (1128)
Q Consensus 973 ~d~~~l~~~~d~~i~v~d~~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1045 (1128)
.+...++.++.|.+..+....-.. +..+.... ...|.++....++..|++.+..|.++-.++..-....+-
T Consensus 156 ~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~--~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg 233 (307)
T 1zi0_A 156 GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE--GDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 233 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTT
T ss_pred CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCC--CCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCC
Confidence 445555666788887777653222 11122222 566777766566677888899999998887542211110
Q ss_pred CCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCCcEEEEcCCC
Q 001190 1046 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1093 (1128)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg~i~iWd~~~ 1093 (1128)
..+.....+. .....+..+.... +...++..+.+|.+.-..+.+
T Consensus 234 --~kG~~~~~~~-~~~~~lv~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 234 --TKGVISIKVT-ERNGLVVGAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp --SCCEESSCCC-TTTCSEEEEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred --CCCEEeeEec-CCCCeEEEEEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 0000000000 1112334433333 345677778888877666554
No 382
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=46.20 E-value=4.4e+02 Score=31.23 Aligned_cols=259 Identities=16% Similarity=0.149 Sum_probs=117.5
Q ss_pred CeeEEEeccCC-CeEEEEe-CCeEEEEECCCceEEEEeeCC-------CCCeeEEEEcCCCCCEEEEEeCC-------Cc
Q 001190 833 AVPCIALSKND-SYVMSAT-GGKISLFNMMTFKVMTTFMSP-------PPASTFLAFHPQDNNIIAIGTED-------ST 896 (1128)
Q Consensus 833 ~v~~~~~s~dg-~~la~~~-dg~i~vwd~~~~~~~~~~~~~-------~~~v~~l~~s~~d~~~lasg~~d-------g~ 896 (1128)
.|..++++|.. ..+.++. .+.|...+- .++.-..+..+ ...|.+++++|.+...+.++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 78999999863 3444444 565555542 23332223222 23588999998544444444321 12
Q ss_pred EEEEeccc-c---eeeec-cc--cc---ccCeeEEEEcCCC-CEEEEEcCCCcEEEE-ECCCCcccceeEEeecCC----
Q 001190 897 IHIYNVRV-D---EVKSK-LK--GH---QKRITGLAFSTSL-NILVSSGADAQLCVW-SIDTWEKRKSVTIHIPAG---- 960 (1128)
Q Consensus 897 v~iwd~~~-~---~~~~~-l~--~h---~~~V~~l~~s~d~-~~l~s~~~Dg~i~iw-d~~~~~~~~~~~~~~~~~---- 960 (1128)
..||.-.. | +.+.. +. ++ ...+..|++.|.. ..|..+...|. -|| ..+.|+.-... ......
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~-gl~~S~DgG~tW~~~-~~~~~~~~~~ 180 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGN-GLWRSTDYGVTWSKV-ESFPNPGTYI 180 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTC-CEEEESSTTSSCEEC-TTCCCCCCCB
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCC-cEEEeCCCCcceecc-cCCCCCcccc
Confidence 45555433 2 22211 11 00 0124678898753 45555543321 233 33333211111 000000
Q ss_pred --------CCCCCccEEEEcCCC--------CEEEEEecCeEEEEecCCc-ccccccccCCCCCCCeEEEEEeeCCCEEE
Q 001190 961 --------KTPTGDTRVQFNADQ--------VRMLVVHETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVF 1023 (1128)
Q Consensus 961 --------~~~~~v~~v~~s~d~--------~~l~~~~d~~i~v~d~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1023 (1128)
.....+..+.++|.. ...+...++.-.||....+ +.-..+..... ......+.++|++.+.+
T Consensus 181 ~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~p~-~~~~~~~~~~~~~~l~~ 259 (737)
T 2cn3_A 181 YDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPK-GLLPHHGVLASNGMLYI 259 (737)
T ss_dssp SCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTCCC-SSEEEEEEECTTSEEEE
T ss_pred cCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCCCC-cccceEEEECCCCeEEE
Confidence 001235668887743 3444333443334554443 32222221110 11224566777776555
Q ss_pred EEe---------cCCcEEEEecCCCceEEEeCCCCCCCCcccCCCCccceEEEEEecCCCCEEEEEECCC---cEEEEcC
Q 001190 1024 ATF---------CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG---SVKVMEP 1091 (1128)
Q Consensus 1024 t~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s~~~dg---~i~iWd~ 1091 (1128)
+.. ..+.|+..+ ..|.....+....... ....-.-..|+++|.+++.|..++.+. ...||.-
T Consensus 260 ~~~d~~g~y~~~~~g~v~~s~-d~G~tW~~i~~~~~~~-----~~~~~~~~~i~v~p~~~~~ly~~~~~~~~~~~~l~~S 333 (737)
T 2cn3_A 260 TYGDTCGPYDGNGKGQVWKFN-TRTGEWIDITPIPYSS-----SDNRFCFAGLAVDRQNPDIIMVTSMNAWWPDEYIFRS 333 (737)
T ss_dssp EEESSCCSSCCSCCEEEEEEE-TTTCCEEECCSSCTTS-----TTCCSEEEEEEECTTCTTCEEEEEECCCSSCCCEEEE
T ss_pred EecCCCCccccccCceEEEEe-CCCCCEEEccCCCCCC-----cccccccccEEEcCCCCCEEEEEecccCCCCccEEEe
Confidence 543 223344433 2334333333211000 000111145888998888877776541 1346677
Q ss_pred CCCCCCcccC
Q 001190 1092 SESEGKWGVS 1101 (1128)
Q Consensus 1092 ~~~~~~w~~~ 1101 (1128)
.++...|...
T Consensus 334 ~DgG~tW~~~ 343 (737)
T 2cn3_A 334 TDGGATWKNI 343 (737)
T ss_dssp SSTTSSCEES
T ss_pred CCCCccccch
Confidence 7776678655
No 383
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=44.84 E-value=2.8e+02 Score=28.62 Aligned_cols=194 Identities=9% Similarity=0.075 Sum_probs=106.0
Q ss_pred cCCCeEEEEe-CCeEEEEECCCceEEE---------EeeCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEeccc------
Q 001190 841 KNDSYVMSAT-GGKISLFNMMTFKVMT---------TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV------ 904 (1128)
Q Consensus 841 ~dg~~la~~~-dg~i~vwd~~~~~~~~---------~~~~~~~~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~------ 904 (1128)
++..++++.+ +|.|+-..+...+... .+. ....+..+.... ....++..+..|.++-+....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 3455666666 7888877665442211 112 223344444444 455677778889877776542
Q ss_pred ---ceee---ecccccccCeeEEEEcC---CCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEE-cCC
Q 001190 905 ---DEVK---SKLKGHQKRITGLAFST---SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF-NAD 974 (1128)
Q Consensus 905 ---~~~~---~~l~~h~~~V~~l~~s~---d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~-s~d 974 (1128)
|..+ -.+. ....|.++...+ +..+|+..+..|.++--.+.........-.....-.....+..+.. .++
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 1111 1122 224455554433 4567888999999998887543221111111111111244555544 344
Q ss_pred CCEEEEEecCeEEEEecCCccc-------ccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecCCC
Q 001190 975 QVRMLVVHETQLAIYDASKMER-------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1039 (1128)
Q Consensus 975 ~~~l~~~~d~~i~v~d~~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~ 1039 (1128)
...++++.+|....+....-.. +..+.... ...|.++..-.++..|++.+..|..+...+..-
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~--~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE--GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT--TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC--CCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 5556667788888887764211 22222222 456667666556777888889999999988653
No 384
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=41.49 E-value=3.6e+02 Score=28.84 Aligned_cols=197 Identities=11% Similarity=0.115 Sum_probs=96.9
Q ss_pred CeeEEEeccCCCeEEEE-eCCeEEEEECCCc-----------eEEEEeeC-CCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 001190 833 AVPCIALSKNDSYVMSA-TGGKISLFNMMTF-----------KVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHI 899 (1128)
Q Consensus 833 ~v~~~~~s~dg~~la~~-~dg~i~vwd~~~~-----------~~~~~~~~-~~~~v~~l~~s~~d~~~lasg~~dg~v~i 899 (1128)
.+..++++....+.+.- .+|.|..|-.... .....+.. ....|..++. +....+....||.|+.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEE
Confidence 34445555444444333 3777888844221 11111221 1224666655 4456666778999999
Q ss_pred Eeccc-cee----------eecccc-cccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCccc-------ceeEEeecCC
Q 001190 900 YNVRV-DEV----------KSKLKG-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR-------KSVTIHIPAG 960 (1128)
Q Consensus 900 wd~~~-~~~----------~~~l~~-h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~-------~~~~~~~~~~ 960 (1128)
|-... +++ ...+.. ....|..++......+.+....||.|..|-....-++ ...+......
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 262 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL 262 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG
T ss_pred eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc
Confidence 97543 111 011111 1234666666443345566678999999976542221 1112221111
Q ss_pred CCCCCccEEEEcCCCCEEEEEecCeEEEEecCCcccc-----------cccccCCCCCCCeEEEEEeeCCCEEEEEecCC
Q 001190 961 KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERI-----------RQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1029 (1128)
Q Consensus 961 ~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~~~~~~-----------~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg 1029 (1128)
....+..|+.-.+ ..++...++.|+.|=......+ ..+.... ...|..++. -..+.+.-..||
T Consensus 263 -~~~~v~~v~~G~~-hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~--~~~v~~ia~--G~~h~~al~~~G 336 (389)
T 3kci_A 263 -TGLGVVKVECGSQ-FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQ--GKKVIAIAT--GSLHCVCCTEDG 336 (389)
T ss_dssp -TTSCEEEEEEETT-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT--TCCEEEEEE--CSSEEEEEETTC
T ss_pred -CCCcEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCC--CCCEEEEEe--ccCeEEEECCCC
Confidence 1122444433222 2344456888888865432211 1111111 234555544 344556667899
Q ss_pred cEEEEecCC
Q 001190 1030 NIGVFDADT 1038 (1128)
Q Consensus 1030 ~i~vwd~~~ 1038 (1128)
.|+.|-...
T Consensus 337 ~v~~wG~n~ 345 (389)
T 3kci_A 337 EVYTWGDND 345 (389)
T ss_dssp CEEEEECCT
T ss_pred CEEEeeCCC
Confidence 999997654
No 385
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.90 E-value=1.9e+02 Score=29.44 Aligned_cols=85 Identities=13% Similarity=0.021 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhcC-hHHHHHHHHH--hcCCCcC---HHHH--HHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHHH
Q 001190 6 RELVFLILQFLEEEK-FKESVHKLEK--ESGFFFN---MKYF--EEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIR 77 (1128)
Q Consensus 6 ~e~~rli~q~L~~~g-~~~s~~~L~~--Es~~~~~---~~~~--~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~ 77 (1128)
-+.++++.+++...| +.++.+.|++ +.++..+ ...+ .-....|++++|+..+.+ +.+. . +.+. .
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~--~-~~~~-l 136 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSL--E-CMAM-T 136 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSH--H-HHHH-H
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCH--H-HHHH-H
Confidence 355777888888887 7777777776 3343232 2111 344577999999999988 2111 1 2111 1
Q ss_pred HhHHhHhhccCCHHHHHHHHHhhc
Q 001190 78 KQKYLEALDRQDKAKAVDILVNDL 101 (1128)
Q Consensus 78 ~~~~~ell~~~~~~~a~~~l~~~~ 101 (1128)
-+. ++..|+.++|+..+++-+
T Consensus 137 ~~~---~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 137 VQI---LLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHH---HHHTTCHHHHHHHHHHHH
T ss_pred HHH---HHHCCCHHHHHHHHHHHH
Confidence 111 345688888888887643
No 386
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=33.15 E-value=1.1e+02 Score=26.29 Aligned_cols=81 Identities=5% Similarity=-0.037 Sum_probs=41.6
Q ss_pred HHHhhcChHHHHHHHHHhcCCCcC-----HHHHHHHhhccCHHHHHHHHcCC-CCCCCcchhhhHHHHHHHhHHhHhhcc
Q 001190 14 QFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGF-TKVDDNRYSMKIFFEIRKQKYLEALDR 87 (1128)
Q Consensus 14 q~L~~~g~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~ell~~ 87 (1128)
.+++..-|.++...+++=-.+..+ ...=.-....|+|++|+..+.+. ...+... . +.+. . =.=+...
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~-a~~~--l--g~~~~~~ 94 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI--K-GYIR--K--AACLVAM 94 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H-HHHH--H--HHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh--H-HHHH--H--HHHHHHC
Confidence 344555577777777665433332 11112334558888888877663 2222211 0 1111 1 1122345
Q ss_pred CCHHHHHHHHHhhc
Q 001190 88 QDKAKAVDILVNDL 101 (1128)
Q Consensus 88 ~~~~~a~~~l~~~~ 101 (1128)
++.++|+..+++-+
T Consensus 95 ~~~~~A~~~~~~al 108 (126)
T 4gco_A 95 REWSKAQRAYEDAL 108 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77888888887643
No 387
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=32.71 E-value=1e+02 Score=31.90 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=19.2
Q ss_pred HHHHHHHhhccCHHHHHHHHcCC
Q 001190 38 MKYFEEKVQAGDWDEVEKYLSGF 60 (1128)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~ 60 (1128)
...|++.|.+|+|=+|.+.+..+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl 39 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI 39 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH
Confidence 67889999999999988877654
No 388
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=32.68 E-value=4.4e+02 Score=27.31 Aligned_cols=207 Identities=8% Similarity=-0.006 Sum_probs=102.0
Q ss_pred CCCeeEEEecc-CCCeEEEEeCCeEEEE---ECCC------ceEEEE-ee-CCCCCeeEEEEcCC--CCCEEEEEeCCCc
Q 001190 831 EEAVPCIALSK-NDSYVMSATGGKISLF---NMMT------FKVMTT-FM-SPPPASTFLAFHPQ--DNNIIAIGTEDST 896 (1128)
Q Consensus 831 ~~~v~~~~~s~-dg~~la~~~dg~i~vw---d~~~------~~~~~~-~~-~~~~~v~~l~~s~~--d~~~lasg~~dg~ 896 (1128)
.+.+..+.... ...+++..+.|.+.-+ ++.. |..+.. +. .....|.++..-++ ++.+++..+.+|.
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 34444444444 4444555557875444 4332 222111 11 12334555433331 2567889999999
Q ss_pred EEEEecccc--------eeeecccccccCeeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccc--eeEEeecCCCCCCCc
Q 001190 897 IHIYNVRVD--------EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK--SVTIHIPAGKTPTGD 966 (1128)
Q Consensus 897 v~iwd~~~~--------~~~~~l~~h~~~V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~v 966 (1128)
++...+..- .....+... +.+..+....+...++..+.+|.+..+....-.... ..-.....-.....+
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~V 196 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYI 196 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCE
T ss_pred EEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEE
Confidence 999887532 222233322 566666665556677778889988888775321110 000111111122445
Q ss_pred cEEEEcCCCC--EEEEEecCeEEEEecCCc-------ccccccccCCCCCCCeEEEEEeeCCCEEEEEecCCcEEEEecC
Q 001190 967 TRVQFNADQV--RMLVVHETQLAIYDASKM-------ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1037 (1128)
Q Consensus 967 ~~v~~s~d~~--~l~~~~d~~i~v~d~~~~-------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~ 1037 (1128)
..+..-+++. .++++..|..+..++... +-+..+.........+..+....++..++..+..|.+....+.
T Consensus 197 v~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 197 VSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred EEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 5554433343 444555777776666542 1112221111002245544433444556666677777666665
Q ss_pred C
Q 001190 1038 T 1038 (1128)
Q Consensus 1038 ~ 1038 (1128)
.
T Consensus 277 ~ 277 (323)
T 1wp5_A 277 D 277 (323)
T ss_dssp G
T ss_pred h
Confidence 4
No 389
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.60 E-value=1.9e+02 Score=36.66 Aligned_cols=37 Identities=8% Similarity=0.241 Sum_probs=30.6
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEecccceeeecc
Q 001190 874 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 911 (1128)
Q Consensus 874 ~v~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l 911 (1128)
.+.+++..+ +..++++-+.|++++||++.+++++.+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 345566666 7889999999999999999999988664
No 390
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=31.26 E-value=1.9e+02 Score=24.35 Aligned_cols=56 Identities=7% Similarity=0.114 Sum_probs=28.4
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEec
Q 001190 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDA 991 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~ 991 (1128)
...+.+..||.+++... ++ +|...+... .....+.+..+|.+++...++...+|..
T Consensus 21 ~~~L~~q~dGnLvl~~~-~~---vW~snt~~~--------------~~~~~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 21 SAAFVMQGDCNLVLYNE-AG---GFQSNTHGR--------------GVDCTLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp TEEEEECTTSCEEEECS-SC---CEECCCTTS--------------CSSCEEEECTTSCEEEECSSCSSCSEEE
T ss_pred CEEEEEccCCeEEEECC-CC---EEECCcccC--------------CcCEEEEEcCCCcEEEEeCCCCEEEEEe
Confidence 34566666666655322 22 776554211 1123566677777666544333345543
No 391
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=30.54 E-value=2.3e+02 Score=24.99 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=52.5
Q ss_pred hHHHHHHHHHhcCCCcC-----HHHHHHHhhccCHHHHHHHHcCC-CCCCCcchhhhHHHHHHHhHHhHhhccCCHHHHH
Q 001190 21 FKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGF-TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAV 94 (1128)
Q Consensus 21 ~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~ell~~~~~~~a~ 94 (1128)
+.++...+++-.....+ ...=+-....|+|++|+.++.+. ...|.+.. +.+. +=.. +...++.++|+
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---a~~~-lg~~---~~~~~~~~~A~ 85 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---AHRF-LGLL---YELEENTDKAV 85 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHH-HHHH---HHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH-HHHH---HHHcCchHHHH
Confidence 34555555555444333 11113356779999999999874 33333321 2211 1122 23468999999
Q ss_pred HHHHhhcccccccCHHHHHHHHHhhcc
Q 001190 95 DILVNDLKVFSTFNEELFKEITQLLTL 121 (1128)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~l~~ll~~ 121 (1128)
..+++-+.- ...+++-+..|..++..
T Consensus 86 ~~~~~al~~-~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 86 ECYRRSVEL-NPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 999885432 12356777777776543
No 392
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=30.53 E-value=1.3e+02 Score=34.49 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=47.5
Q ss_pred eEEEEEEcCCCCeEEEeeecc--------CCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEE
Q 001190 540 WCTTMLYSADGSRLFSCGTSK--------DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~~--------~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1128)
..-.|+|+++|+++++--.+. .+...+.+.+..++++.+.+.+..+..++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 456789999998655432110 1235677778888998888888888789999999999888765
No 393
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=30.31 E-value=1.1e+02 Score=26.36 Aligned_cols=100 Identities=12% Similarity=0.143 Sum_probs=48.0
Q ss_pred HHhhcChHHHHHHHHHhcCCCcC-HHHH----HHHhhccCHHHHHHHHcCC-CCCCCcchhhhHHHHHHHhHHhHhhccC
Q 001190 15 FLEEEKFKESVHKLEKESGFFFN-MKYF----EEKVQAGDWDEVEKYLSGF-TKVDDNRYSMKIFFEIRKQKYLEALDRQ 88 (1128)
Q Consensus 15 ~L~~~g~~~s~~~L~~Es~~~~~-~~~~----~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~ell~~~ 88 (1128)
+++..-|.++...+++=-.+..+ ...+ .-....|+|++|+..+.+. ...+.........-.++...=.-+...+
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~ 97 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN 97 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 44444577777777665444333 1111 2345568888888877653 1111110000011111211112233457
Q ss_pred CHHHHHHHHHhhcccccccCHHHHHHHH
Q 001190 89 DKAKAVDILVNDLKVFSTFNEELFKEIT 116 (1128)
Q Consensus 89 ~~~~a~~~l~~~~~~~~~~~~~~~~~l~ 116 (1128)
+..+|+..+++-+.- ..+++.+..|.
T Consensus 98 ~~~~A~~~~~kal~~--~~~~~~~~~l~ 123 (127)
T 4gcn_A 98 DLSLAVQWFHRSLSE--FRDPELVKKVK 123 (127)
T ss_dssp CHHHHHHHHHHHHHH--SCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcCHHHHHHHH
Confidence 888888888775542 12455544443
No 394
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=29.50 E-value=32 Score=27.66 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.6
Q ss_pred CCcchHHHHHHHHHHHhhc
Q 001190 1 MSSLSRELVFLILQFLEEE 19 (1128)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~ 19 (1128)
|+..++++...|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 7788999999999999764
No 395
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=29.46 E-value=1.3e+02 Score=31.47 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=18.1
Q ss_pred HHHHHHHhhccCH---HHHHHHHcCC
Q 001190 38 MKYFEEKVQAGDW---DEVEKYLSGF 60 (1128)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~ 60 (1128)
+.+|++.|.+|+| -+|.+.+..+
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi 41 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV 41 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH
Confidence 5788999999999 7777766643
No 396
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=29.01 E-value=6.7e+02 Score=28.27 Aligned_cols=186 Identities=10% Similarity=-0.001 Sum_probs=97.7
Q ss_pred ceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEe-cCCCCCeEEEeccCCCCccEEEEEeccC----cEEEEecCC
Q 001190 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICPHHKENIQFIFSTAIDG----KIKAWLYDT 527 (1128)
Q Consensus 453 ~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~~wd~~~ 527 (1128)
...-..+.-||+. -|+.|+ .+.|.+|+.+... .+|...+....|.|+..|..++.+.+++ -..+.|..+
T Consensus 327 ~~~vaDVDgDG~d-EIv~Gs-----~~iD~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~t 400 (591)
T 2zux_A 327 NLSIADVDGDGKD-EIIFGS-----MAVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAAT 400 (591)
T ss_dssp CCEEECCSSSSSC-EEEETT-----EEECTTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTT
T ss_pred CCeeEeCCCCCCc-eEEEee-----eEECCCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCC
Confidence 3444556667776 455555 2567777777655 3788888888888876677777776652 344578777
Q ss_pred CCceeeecCC--CCeEEEEEEcCCCC--eEEEeeeccCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCC-EEEE
Q 001190 528 MGSRVDYDAP--GHWCTTMLYSADGS--RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLA 602 (1128)
Q Consensus 528 ~~~~~~~~~~--~~~i~~~~~s~~g~--~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 602 (1128)
++..+..... .+......|.|+.. .+.+ . . .+++. +|+.+..... ...-..+-|..+.. .++-
T Consensus 401 G~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~-~------~--~l~~~-~G~~i~~~~p--~~~N~~i~WdGDl~relld 468 (591)
T 2zux_A 401 GKILWGVYAGKDVGRGMAADIDPRYPGQEVWA-N------G--SLYSA-KGVKIGSGVP--SSTNFGIWWDGDLLREQLD 468 (591)
T ss_dssp CCEEEEECCSSCCCCEEEECCCTTSSSCEEEE-T------T--EEECT-TSCBCSSCCC--SCCSEEECCSSSSSCEEEE
T ss_pred CcEEEEcCCCCCCCceeEEecCCCCCceEEEe-c------C--ceECC-CCCEecCCCC--CCcceeEEECCCCcHhhhC
Confidence 7777665443 23334444555422 2222 0 0 24554 3343332211 11122355666653 3333
Q ss_pred EECCCcEEEEECCCCeeeEEEecCC-------CCCCcceEEEcCCCC-EEEEE-EcCCcEEEEEcc
Q 001190 603 VGEDSQIKFWDMDNVNILTSTDAEG-------GLPNLPRLRFSKEGN-LLAVT-TADNGFKILANA 659 (1128)
Q Consensus 603 ~s~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~v~~sp~~~-~l~~~-~~dg~i~iw~~~ 659 (1128)
.+.|.-|+...++....+...+ ...+..+..+--|.+ -++.. .++..++||...
T Consensus 469 ---~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~ 531 (591)
T 2zux_A 469 ---SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTT 531 (591)
T ss_dssp ---TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCC
T ss_pred ---CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCC
Confidence 2468889987776444443322 111122222333322 34433 445679998754
No 397
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=27.49 E-value=2e+02 Score=32.65 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=46.2
Q ss_pred eEEEEEEcCCCCeEEEeeec--------cCCCceEEEEeCCCCceeeEeccccCCceeEEEEeCCCCEEEEEE
Q 001190 540 WCTTMLYSADGSRLFSCGTS--------KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1128)
Q Consensus 540 ~i~~~~~s~~g~~l~~~~~~--------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 604 (1128)
....|+|.++|.+.++.-.. ..+...+..++..++++...+.+.....++.++|+||++.|++.-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 56789999999876632110 012337888888888887777655555688999999999887764
No 398
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=25.42 E-value=2.2e+02 Score=33.33 Aligned_cols=37 Identities=14% Similarity=0.442 Sum_probs=30.4
Q ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCeeeEEEec
Q 001190 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1128)
Q Consensus 587 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 625 (1128)
.|.++.+ +..++++.+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3444433 478999999999999999999999888776
No 399
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=25.20 E-value=11 Score=31.80 Aligned_cols=37 Identities=11% Similarity=0.233 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHhhccCHHHHHHHHcCC
Q 001190 23 ESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60 (1128)
Q Consensus 23 ~s~~~L~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1128)
..+..+-+|||++..+..+-..| +|+||++.+.+.++
T Consensus 36 a~~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 36 DRAIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 34555667899999866666666 49999999988764
No 400
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.05 E-value=41 Score=19.40 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHhh
Q 001190 5 SRELVFLILQFLEE 18 (1128)
Q Consensus 5 ~~e~~rli~q~L~~ 18 (1128)
-+|+++||-||-..
T Consensus 4 MkDvlql~qQy~qs 17 (26)
T 1kdl_A 4 MKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 46888888887554
No 401
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=24.91 E-value=3e+02 Score=22.83 Aligned_cols=89 Identities=8% Similarity=-0.079 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC-----HHHHHHHhhccCHHHHHHHHcCC-CCCCCcchhhhHHHHHHHh
Q 001190 6 RELVFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGF-TKVDDNRYSMKIFFEIRKQ 79 (1128)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~ 79 (1128)
.....+...++...-|.++...+++-.....+ ...-.-....|+|++|+.++.+. ...+.+. .+.+.+- .
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la-~ 92 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI---KGYTRKA-A 92 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH---HHHHHHH-H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch---HHHHHHH-H
Confidence 34455566666666788888888776555443 11222345568999998888764 2222211 1221111 1
Q ss_pred HHhHhhccCCHHHHHHHHHhhc
Q 001190 80 KYLEALDRQDKAKAVDILVNDL 101 (1128)
Q Consensus 80 ~~~ell~~~~~~~a~~~l~~~~ 101 (1128)
. +...++.++|+..+++-+
T Consensus 93 ~---~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 93 A---LEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp H---HHHTTCHHHHHHHHHHHH
T ss_pred H---HHHHhhHHHHHHHHHHHH
Confidence 1 234588888888887644
No 402
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=22.80 E-value=9.8e+02 Score=28.11 Aligned_cols=105 Identities=11% Similarity=0.050 Sum_probs=56.9
Q ss_pred cceeEEEEecCCCeEEEEEecCCCeEEEEecCCCeEEEecCC-------CCCeEEEeccCCCCccEEEEEec-c-----C
Q 001190 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH-------EAPVYSICPHHKENIQFIFSTAI-D-----G 518 (1128)
Q Consensus 452 ~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd~~g~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~~~-d-----g 518 (1128)
+.|..|+++|.... .++.+...+.|..++..|+.-..+..+ ...|.+++++|...+.+++..+. . +
T Consensus 23 g~i~~i~~~p~~~~-~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKD-LIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTT-CEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCC-EEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 37999999997533 355566567666666555544444322 23589999988544444444332 0 1
Q ss_pred cEEEEecCCCCceeee-cCC---------CCeEEEEEEcCCC-CeEEEee
Q 001190 519 KIKAWLYDTMGSRVDY-DAP---------GHWCTTMLYSADG-SRLFSCG 557 (1128)
Q Consensus 519 ~i~~wd~~~~~~~~~~-~~~---------~~~i~~~~~s~~g-~~l~~~~ 557 (1128)
...+|.-..+...... ... ...+..+++.|.. ..++++.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 2445544444333221 110 0124678888854 4555543
No 403
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.67 E-value=2e+02 Score=29.20 Aligned_cols=103 Identities=9% Similarity=0.076 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhcC-hHHHHHHHHHhcCCCcC--HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHHHHhHHhHh
Q 001190 8 LVFLILQFLEEEK-FKESVHKLEKESGFFFN--MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (1128)
Q Consensus 8 ~~rli~q~L~~~g-~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~el 84 (1128)
+..++.+.+...| |.++...|++ +-..+ .....-....|++++|+..+.+......+. ..+.+.. .++.+
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~l~~-a~~~l 175 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA----TLTQLAT-AWVSL 175 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc----HHHHHHH-HHHHH
Confidence 3333334444444 8888888887 22222 223344557799999999988752222121 1111111 12222
Q ss_pred -hccCCHHHHHHHHHhhcccccccCHHHHHHHHHh
Q 001190 85 -LDRQDKAKAVDILVNDLKVFSTFNEELFKEITQL 118 (1128)
Q Consensus 85 -l~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~l 118 (1128)
...++.++|+..+++-+.-. ..++.-+..+..+
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~ 209 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAAC 209 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHH
T ss_pred HhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 23467888888887654321 2244444444443
No 404
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=22.60 E-value=3.3e+02 Score=22.61 Aligned_cols=57 Identities=9% Similarity=0.157 Sum_probs=29.6
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEECCCCcccceeEEeecCCCCCCCccEEEEcCCCCEEEEEecCeEEEEecC
Q 001190 918 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 992 (1128)
Q Consensus 918 V~~l~~s~d~~~l~s~~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v~d~~ 992 (1128)
...+.|..||.+++... .-.+|...+... .....+.+..+|.+++...++. .+|...
T Consensus 20 ~~~L~~q~dGnLvly~~---~~~vW~snt~~~--------------~~~~~l~l~~dGNLvl~~~~~~-~~W~S~ 76 (109)
T 3dzw_A 20 RYVFIMQEDCNLVLYDV---DKPIWATNTGGL--------------DRRCHLSMQSDGNLVVYSPRNN-PIWASN 76 (109)
T ss_dssp TEEEEECTTSCEEEEET---TEEEEECCCTTS--------------SSSCEEEECTTSCEEEECTTSC-EEEECC
T ss_pred CEEEEEcCCCcEEEEeC---CEEEEECCcccC--------------CCCEEEEEeCCCCEEEECCCCC-EEEECC
Confidence 34555666666555322 245676544210 1224567777877766543333 467543
No 405
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=22.30 E-value=68 Score=40.69 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=34.3
Q ss_pred CCeEEEEEeeCCCEEEEEecCCcEEEEecCCCceEEEeCCC
Q 001190 1008 APISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPS 1048 (1128)
Q Consensus 1008 ~~v~~l~~s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 1048 (1128)
..+.+++..++.+++++-+.|++++||++.++.++......
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 34456667788899999999999999999999998887743
No 406
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=21.83 E-value=6.7e+02 Score=25.85 Aligned_cols=193 Identities=8% Similarity=0.053 Sum_probs=96.0
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcce-eceeecccccceeEEEEecCCCeEEEEEecCCCeEEEEe-c---C------C
Q 001190 416 PDGNYVGVAFTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---S------G 484 (1128)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~fs~d~~~~~l~s~s~d~~i~vWd-~---~------g 484 (1128)
|+..++++.+.+|.|+--.+..-+... .-..+... +.+..+....... .|+..+..|.+.-.. . . |
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d--~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKD--VLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 566778889999999877654211000 00012222 3344444444444 344445566654443 1 1 2
Q ss_pred CeEEE---ecCCCCCeEEEeccCC-CCccEEEEEeccCcEEEEecCCCC------ceeeecC-CCCeEEEEEEcCCCCeE
Q 001190 485 RKLFN---FEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMG------SRVDYDA-PGHWCTTMLYSADGSRL 553 (1128)
Q Consensus 485 ~~~~~---~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~------~~~~~~~-~~~~i~~~~~s~~g~~l 553 (1128)
.++.. +. ....|.++..... .++.+++.++.+|.++.-.+.... ....+.. .+..+..+........+
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 21111 22 2334555432221 234678999999999998764221 2222221 22344444443444445
Q ss_pred EEeeeccCCCceEEEEeCCCC-------ceeeEeccccCCceeEEEEeCCCC-EEEEEECCCcEEEEECCC
Q 001190 554 FSCGTSKDGDSFLVEWNESEG-------TIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDN 616 (1128)
Q Consensus 554 ~~~~~~~~~~~~i~~wd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~ 616 (1128)
+..+ ..|.+..++...- +-++-+....+..+..+..-+++. .+++.+..|..+..++..
T Consensus 159 ~l~T----~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 159 FLVT----HNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEE----TTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEe----CCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 5544 3777777765421 112222222233344443333444 788889999888877654
No 407
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=21.62 E-value=3.2e+02 Score=27.57 Aligned_cols=104 Identities=12% Similarity=0.121 Sum_probs=54.8
Q ss_pred HHHHHHHhhcChHHHHHHHHHhcCCCcC-----HHHHHHHhhccCHHHHHHHHcCCCCCCCcchhhhHHHHHHHhHHhHh
Q 001190 10 FLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (1128)
Q Consensus 10 rli~q~L~~~g~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~el 84 (1128)
.+-..++..--+.++...|++=-....+ ...-+-.+..|++++|+..+.++.....+. . ...-..-+++
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~----~--~~~~~~~~~l 195 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT----R--YQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH----H--HHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch----H--HHHHHHHHHH
Confidence 3344445555567776666665444443 223344566789999999888863332221 1 1112223445
Q ss_pred hccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhc
Q 001190 85 LDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120 (1128)
Q Consensus 85 l~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll~ 120 (1128)
...++..+|+..+++-+.-- ..+++-...|..++.
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~ 230 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLH 230 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 55566666777776644321 224555555555544
No 408
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=20.55 E-value=3.2e+02 Score=22.43 Aligned_cols=94 Identities=11% Similarity=0.098 Sum_probs=48.5
Q ss_pred HHHHHHHHhhcChHHHHHHHHHhcCCCcC-----HHHHHHHhhccCHHHHHHHHcCCCCC-CCcchhhhHHHHHHHhHHh
Q 001190 9 VFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYL 82 (1128)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~ 82 (1128)
..+...++...-|.++...+++-.....+ ...-.-....|+|++|+.++.+.... +...........++...-.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 34445555555677777777665433322 12223345679999999988764111 1110000011112222222
Q ss_pred HhhccCCHHHHHHHHHhhcc
Q 001190 83 EALDRQDKAKAVDILVNDLK 102 (1128)
Q Consensus 83 ell~~~~~~~a~~~l~~~~~ 102 (1128)
-+...++.++|+..+++-+.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 23456889999988877543
No 409
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=20.52 E-value=4.2e+02 Score=25.06 Aligned_cols=109 Identities=8% Similarity=0.024 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHhcCCCcC-H----HHHHHHhhccCHHHHHHHHcCC-CCCCCcchhhhHHHHHHHh
Q 001190 6 RELVFLILQFLEEEKFKESVHKLEKESGFFFN-M----KYFEEKVQAGDWDEVEKYLSGF-TKVDDNRYSMKIFFEIRKQ 79 (1128)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~-~----~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~ 79 (1128)
+-...+-..++...-|.++...+++--.+..+ . ..=.-....|++++|+..+.+. ...|.+.. ..+.+ -.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~l-g~ 81 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG---GYMVL-SE 81 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHH-HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHH-HH
Confidence 33455555666666788999888887776554 1 1223445679999999998874 33333321 11111 11
Q ss_pred HHhHh--------hccCCHHHHHHHHHhhcccccccCHHHHHHHHHhh
Q 001190 80 KYLEA--------LDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLL 119 (1128)
Q Consensus 80 ~~~el--------l~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~ll 119 (1128)
.|+++ +..|+..+|+..+++-+.-- ..+++-+..+..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~ 128 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVY 128 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 12111 11277888988888744311 12344444444443
No 410
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=20.44 E-value=3.3e+02 Score=21.73 Aligned_cols=87 Identities=9% Similarity=-0.103 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHhcCCCcC-----HHHHHHHhhccCHHHHHHHHcCC-CCCCCcchhhhHHHHHHHhHH
Q 001190 8 LVFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGF-TKVDDNRYSMKIFFEIRKQKY 81 (1128)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~L~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~ 81 (1128)
...+...++...-|.++...+++=-....+ ...-.-....|+|++|+.++.+. ...+.+. .+.+.+-
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~a---- 79 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG---KGYSRKA---- 79 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHH----
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH---HHHHHHH----
Confidence 445556666666678877777764433332 11223345568999988888764 2222111 1111111
Q ss_pred hHhhccCCHHHHHHHHHhhc
Q 001190 82 LEALDRQDKAKAVDILVNDL 101 (1128)
Q Consensus 82 ~ell~~~~~~~a~~~l~~~~ 101 (1128)
.-+...++..+|+..+++-+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 11234578888888887644
Done!