Query 001191
Match_columns 1127
No_of_seqs 289 out of 387
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 18:18:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14566 PTPlike_phytase: Inos 100.0 2.6E-41 5.6E-46 343.4 -1.4 146 379-535 1-149 (149)
2 PF14566 PTPlike_phytase: Inos 100.0 4.7E-39 1E-43 326.9 -1.4 145 817-974 1-148 (149)
3 PTZ00242 protein tyrosine phos 98.0 2.6E-05 5.7E-10 81.5 9.3 54 478-531 61-119 (166)
4 COG2453 CDC14 Predicted protei 97.8 2.4E-05 5.3E-10 82.6 6.1 61 477-537 71-132 (180)
5 PTZ00393 protein tyrosine phos 97.8 6.2E-05 1.3E-09 82.4 9.2 57 478-535 137-194 (241)
6 PF05706 CDKN3: Cyclin-depende 97.8 3.9E-05 8.6E-10 79.5 7.0 94 429-537 64-158 (168)
7 PTZ00242 protein tyrosine phos 97.6 8.7E-05 1.9E-09 77.6 6.0 57 56-114 60-121 (166)
8 KOG1720 Protein tyrosine phosp 97.6 9.2E-05 2E-09 78.8 5.4 57 478-536 115-171 (225)
9 PF05706 CDKN3: Cyclin-depende 97.5 0.00014 3.1E-09 75.5 6.1 70 902-978 87-159 (168)
10 smart00195 DSPc Dual specifici 97.4 0.00025 5.4E-09 70.9 6.6 58 478-535 44-103 (138)
11 PTZ00393 protein tyrosine phos 97.4 0.00021 4.6E-09 78.2 6.1 58 56-116 136-194 (241)
12 smart00012 PTPc_DSPc Protein t 97.4 0.00089 1.9E-08 62.7 9.6 59 480-538 4-67 (105)
13 smart00404 PTPc_motif Protein 97.4 0.00089 1.9E-08 62.7 9.6 59 480-538 4-67 (105)
14 PF00782 DSPc: Dual specificit 97.4 0.00018 3.8E-09 71.4 4.8 58 478-535 39-98 (133)
15 COG2453 CDC14 Predicted protei 97.3 0.00027 5.8E-09 74.8 5.6 58 918-975 70-130 (180)
16 cd00127 DSPc Dual specificity 97.1 0.0008 1.7E-08 66.9 5.8 57 478-534 47-105 (139)
17 smart00195 DSPc Dual specifici 97.0 0.0012 2.5E-08 66.1 6.1 56 919-974 43-102 (138)
18 KOG1720 Protein tyrosine phosp 97.0 0.00083 1.8E-08 71.7 5.1 57 919-977 114-172 (225)
19 smart00012 PTPc_DSPc Protein t 96.9 0.0012 2.7E-08 61.7 5.1 57 62-118 5-66 (105)
20 smart00404 PTPc_motif Protein 96.9 0.0012 2.7E-08 61.7 5.1 57 62-118 5-66 (105)
21 KOG1719 Dual specificity phosp 96.8 0.0018 3.9E-08 66.1 5.6 63 468-536 70-134 (183)
22 PF00782 DSPc: Dual specificit 96.8 0.0015 3.4E-08 64.7 5.1 58 917-974 36-97 (133)
23 PRK12361 hypothetical protein; 96.7 0.0021 4.6E-08 79.2 6.4 56 478-534 142-198 (547)
24 TIGR01244 conserved hypothetic 96.7 0.0033 7.2E-08 63.5 6.7 50 478-531 57-106 (135)
25 cd00127 DSPc Dual specificity 96.6 0.0025 5.5E-08 63.4 5.1 59 59-117 47-107 (139)
26 PF04273 DUF442: Putative phos 96.3 0.012 2.7E-07 57.6 7.5 62 461-531 45-106 (110)
27 TIGR01244 conserved hypothetic 96.2 0.0064 1.4E-07 61.5 5.0 51 919-971 56-106 (135)
28 PHA02740 protein tyrosine phos 96.2 0.023 4.9E-07 65.1 9.9 58 478-537 180-248 (298)
29 COG5599 PTP2 Protein tyrosine 96.1 0.0037 8.1E-08 68.9 3.3 49 484-535 191-243 (302)
30 PRK12361 hypothetical protein; 96.1 0.0072 1.6E-07 74.5 5.9 55 919-973 141-198 (547)
31 PF03162 Y_phosphatase2: Tyros 96.0 0.014 3E-07 61.2 6.9 54 919-974 55-113 (164)
32 COG5350 Predicted protein tyro 95.9 0.011 2.3E-07 60.6 5.1 57 478-534 59-117 (172)
33 PLN02727 NAD kinase 95.8 0.014 3.1E-07 74.1 6.8 61 465-532 302-363 (986)
34 COG5350 Predicted protein tyro 95.6 0.011 2.5E-07 60.3 4.0 58 60-117 60-119 (172)
35 smart00194 PTPc Protein tyrosi 95.3 0.036 7.7E-07 61.6 7.0 58 478-537 160-220 (258)
36 KOG0791 Protein tyrosine phosp 95.1 0.034 7.4E-07 64.1 6.2 60 478-537 252-314 (374)
37 PHA02742 protein tyrosine phos 95.1 0.033 7.2E-07 63.8 5.9 57 481-537 186-256 (303)
38 cd00047 PTPc Protein tyrosine 95.0 0.047 1E-06 59.5 6.6 52 486-537 138-193 (231)
39 COG5599 PTP2 Protein tyrosine 94.7 0.018 3.9E-07 63.7 2.4 48 67-117 193-244 (302)
40 PF04273 DUF442: Putative phos 94.5 0.061 1.3E-06 52.9 5.5 59 906-971 48-106 (110)
41 PF13350 Y_phosphatase3: Tyros 94.4 0.07 1.5E-06 55.5 5.9 67 461-527 48-141 (164)
42 PRK15375 pathogenicity island 94.2 0.055 1.2E-06 65.1 5.0 49 484-532 429-488 (535)
43 KOG0790 Protein tyrosine phosp 94.1 0.043 9.3E-07 64.2 4.0 60 480-539 416-480 (600)
44 KOG0792 Protein tyrosine phosp 94.1 0.057 1.2E-06 68.9 5.1 58 485-543 1035-1095(1144)
45 KOG1716 Dual specificity phosp 94.0 0.08 1.7E-06 60.2 5.7 57 478-534 121-179 (285)
46 PHA02740 protein tyrosine phos 93.9 0.092 2E-06 60.2 6.0 48 68-117 187-247 (298)
47 PHA02746 protein tyrosine phos 93.8 0.1 2.2E-06 60.4 6.4 51 487-537 211-274 (323)
48 KOG1717 Dual specificity phosp 93.8 0.083 1.8E-06 58.5 5.0 63 477-539 216-280 (343)
49 PHA02747 protein tyrosine phos 93.7 0.11 2.4E-06 59.9 6.3 54 484-537 190-256 (312)
50 PLN02727 NAD kinase 93.7 0.18 4E-06 64.4 8.5 58 59-117 310-367 (986)
51 smart00194 PTPc Protein tyrosi 93.7 0.085 1.8E-06 58.6 5.2 51 67-117 166-219 (258)
52 cd00047 PTPc Protein tyrosine 93.4 0.11 2.4E-06 56.6 5.5 51 67-117 138-192 (231)
53 KOG0792 Protein tyrosine phosp 93.2 0.069 1.5E-06 68.2 3.7 48 68-117 1037-1089(1144)
54 KOG1719 Dual specificity phosp 93.1 0.12 2.6E-06 53.2 4.6 59 57-115 73-133 (183)
55 KOG0790 Protein tyrosine phosp 93.0 0.058 1.3E-06 63.1 2.5 56 62-117 417-477 (600)
56 PHA02738 hypothetical protein; 92.9 0.15 3.2E-06 59.0 5.7 57 481-537 182-254 (320)
57 PHA02742 protein tyrosine phos 92.8 0.14 3E-06 58.8 5.2 27 91-117 229-255 (303)
58 KOG0791 Protein tyrosine phosp 91.9 0.26 5.6E-06 57.1 5.9 59 60-118 253-314 (374)
59 KOG2283 Clathrin coat dissocia 91.8 0.1 2.2E-06 62.5 2.7 58 480-538 74-134 (434)
60 PHA02746 protein tyrosine phos 91.6 0.17 3.6E-06 58.7 4.2 27 91-117 247-273 (323)
61 KOG4228 Protein tyrosine phosp 91.6 0.14 3E-06 66.2 3.6 59 481-539 698-759 (1087)
62 PF13350 Y_phosphatase3: Tyros 91.5 0.31 6.7E-06 50.7 5.6 69 904-974 49-146 (164)
63 PHA02747 protein tyrosine phos 91.5 0.28 6.2E-06 56.5 5.8 26 92-117 230-255 (312)
64 PHA02738 hypothetical protein; 91.4 0.17 3.7E-06 58.5 4.0 28 91-118 227-254 (320)
65 KOG1716 Dual specificity phosp 91.3 0.22 4.8E-06 56.6 4.6 59 59-117 121-181 (285)
66 KOG1718 Dual specificity phosp 91.1 0.32 7E-06 50.9 5.1 60 478-538 60-121 (198)
67 PRK15375 pathogenicity island 91.1 0.24 5.1E-06 59.9 4.7 48 67-114 431-489 (535)
68 PF00102 Y_phosphatase: Protei 90.8 0.35 7.7E-06 52.0 5.4 60 478-539 137-199 (235)
69 PF03162 Y_phosphatase2: Tyros 87.9 0.52 1.1E-05 49.5 3.9 59 59-118 56-118 (164)
70 KOG2836 Protein tyrosine phosp 87.1 3 6.4E-05 42.4 8.3 53 478-530 62-117 (173)
71 PF00102 Y_phosphatase: Protei 85.7 0.91 2E-05 48.8 4.4 51 66-118 142-197 (235)
72 KOG0789 Protein tyrosine phosp 84.3 1.8 3.9E-05 51.2 6.4 58 479-536 265-325 (415)
73 KOG1717 Dual specificity phosp 84.2 1.3 2.8E-05 49.5 4.6 54 918-974 215-275 (343)
74 KOG4228 Protein tyrosine phosp 84.1 0.67 1.5E-05 60.2 2.8 60 478-537 983-1045(1087)
75 COG3453 Uncharacterized protei 82.9 1.7 3.7E-05 43.3 4.5 48 918-967 56-103 (130)
76 KOG0793 Protein tyrosine phosp 77.5 3 6.5E-05 51.8 5.0 61 480-543 894-959 (1004)
77 KOG0789 Protein tyrosine phosp 71.2 6.4 0.00014 46.6 5.8 55 60-116 265-324 (415)
78 KOG2283 Clathrin coat dissocia 70.7 2.2 4.8E-05 51.4 1.7 51 923-974 75-130 (434)
79 COG3453 Uncharacterized protei 70.2 13 0.00027 37.5 6.4 55 463-526 48-102 (130)
80 KOG1530 Rhodanese-related sulf 70.0 17 0.00038 37.0 7.5 60 461-529 43-107 (136)
81 KOG1718 Dual specificity phosp 57.8 16 0.00034 38.9 4.7 55 919-973 59-117 (198)
82 KOG2836 Protein tyrosine phosp 57.5 20 0.00044 36.6 5.3 55 919-973 61-120 (173)
83 COG2365 Protein tyrosine/serin 50.9 14 0.00031 41.4 3.5 26 948-975 134-159 (249)
84 KOG1530 Rhodanese-related sulf 50.7 33 0.00072 35.0 5.6 64 902-971 42-109 (136)
85 cd03174 DRE_TIM_metallolyase D 49.6 59 0.0013 35.9 8.2 99 6-121 117-215 (265)
86 cd01518 RHOD_YceA Member of th 42.0 39 0.00084 31.8 4.5 20 507-527 58-77 (101)
87 KOG1572 Predicted protein tyro 40.0 61 0.0013 36.3 6.0 55 478-534 109-170 (249)
88 cd01523 RHOD_Lact_B Member of 37.0 76 0.0016 29.7 5.6 22 84-106 54-75 (100)
89 KOG0793 Protein tyrosine phosp 34.4 32 0.00069 43.4 3.2 54 62-118 895-953 (1004)
90 COG2365 Protein tyrosine/serin 33.9 38 0.00083 38.0 3.5 24 510-533 136-159 (249)
91 PRK08903 DnaA regulatory inact 32.9 42 0.0009 36.5 3.6 29 89-117 40-68 (227)
92 KOG1572 Predicted protein tyro 32.7 1.2E+02 0.0026 34.0 6.9 63 58-120 108-177 (249)
93 PF01656 CbiA: CobQ/CobB/MinD/ 29.3 54 0.0012 34.0 3.6 24 94-117 2-25 (195)
94 KOG2386 mRNA capping enzyme, g 29.1 38 0.00083 40.5 2.6 57 478-535 86-148 (393)
95 cd07944 DRE_TIM_HOA_like 4-hyd 28.9 2.2E+02 0.0048 32.3 8.6 94 7-122 112-209 (266)
96 PRK07414 cob(I)yrinic acid a,c 28.6 46 0.001 35.8 2.9 24 90-113 20-43 (178)
97 cd01523 RHOD_Lact_B Member of 28.1 2.8E+02 0.006 25.9 7.8 52 461-525 20-75 (100)
98 cd07945 DRE_TIM_CMS Leptospira 27.6 2.3E+02 0.0049 32.5 8.4 100 7-122 118-217 (280)
99 cd07945 DRE_TIM_CMS Leptospira 26.4 2.6E+02 0.0056 32.0 8.6 110 408-537 104-213 (280)
100 cd02036 MinD Bacterial cell di 24.5 68 0.0015 32.9 3.2 25 93-117 2-26 (179)
101 PF04212 MIT: MIT (microtubule 24.4 3.4E+02 0.0074 24.0 7.3 50 611-661 6-61 (69)
102 cd07938 DRE_TIM_HMGL 3-hydroxy 23.8 4.3E+02 0.0094 30.1 9.8 54 477-536 161-214 (274)
103 cd03111 CpaE_like This protein 23.3 76 0.0016 30.6 3.1 25 94-118 3-27 (106)
104 TIGR03815 CpaE_hom_Actino heli 22.9 1.3E+02 0.0027 34.8 5.3 62 49-117 56-120 (322)
105 cd02042 ParA ParA and ParB of 22.8 90 0.002 29.3 3.5 25 93-117 2-26 (104)
106 TIGR02090 LEU1_arch isopropylm 22.6 4.4E+02 0.0095 31.3 9.8 82 7-103 115-196 (363)
107 cd07948 DRE_TIM_HCS Saccharomy 20.8 5E+02 0.011 29.5 9.4 82 7-103 115-196 (262)
108 cd00561 CobA_CobO_BtuR ATP:cor 20.3 80 0.0017 33.3 2.7 25 92-116 3-27 (159)
109 PRK10037 cell division protein 20.3 75 0.0016 35.2 2.7 25 93-117 4-28 (250)
110 cd01518 RHOD_YceA Member of th 20.2 1.4E+02 0.003 28.0 4.2 21 88-109 58-78 (101)
111 KOG4388 Hormone-sensitive lipa 20.0 1.2E+02 0.0026 38.0 4.4 45 916-960 349-405 (880)
No 1
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=100.00 E-value=2.6e-41 Score=343.40 Aligned_cols=146 Identities=45% Similarity=0.764 Sum_probs=122.5
Q ss_pred EEccccceEEECCeeeeecccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeecCCC---ccccccc
Q 001191 379 HNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRERVERMEARLKEDILREAERYGGAIMVIHETNDG---QIFDAWE 455 (1127)
Q Consensus 379 vnLREEpv~yinG~p~slR~~~~~~~N~~~~~Gis~~~vE~~E~~Lk~dil~ea~~~~g~ilv~~e~~~g---~~~~~~e 455 (1127)
|||||||||||||.|||||+++++..|+..+.|++++++|++|.+||+||+.+++..+|.+++|++..++ ++.++|+
T Consensus 1 vdLReE~h~~ing~p~s~r~~~~~~~~~~~~~g~~~~~~e~~E~~Lk~di~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~ 80 (149)
T PF14566_consen 1 VDLREEPHGYINGRPYSWREPDNPANNIKSYPGISADEVEQLEERLKEDILKEAKRFGGRILVHDEDEDGVVSTVIEVWE 80 (149)
T ss_dssp EEEE-S-EEEETTEEEEEECGGGTTTTTHHHHHHHHHHHHHHHTHCCCCCEEEEECEECCCTCCCCEECEEEEE-S-E--
T ss_pred CcCCcCCEEEECCcEeeecccCCcccccccccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccccccchhhhH
Confidence 7999999999999999999999988887788999999999999999999999999999999999998887 4555664
Q ss_pred ccccCcccChHHHHhccccCCcCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHH
Q 001191 456 HVSSESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLK 535 (1127)
Q Consensus 456 ~v~~~~v~T~~Ev~~~~~~~~~~l~Y~RIPitD~~aP~~~d~D~fl~~v~~~~~~~~l~FhCq~G~GRTTt~MVi~~Li~ 535 (1127)
.+|++++++.. |++|+||||||++||.+++||+||++++++|+++|||||||+|+|||||||||++|++
T Consensus 81 ------~~~e~~~~~~~-----g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 81 ------EVTEEELVEGN-----GLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp -------E-HHHHHHHT-----T-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcC-----CceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 67888888765 9999999999999999999999999999999999999999999999999999999985
No 2
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=100.00 E-value=4.7e-39 Score=326.88 Aligned_cols=145 Identities=37% Similarity=0.575 Sum_probs=114.2
Q ss_pred EecccceEEEECCeeeeeccCCCccccc-cccCCChhHHHHHHHHHHHHHHHHHHhhCCeeeeeccccCCCCCCCccccc
Q 001191 817 TDLREEAVVYINGTPFVLRELNKPVDTL-KHVGITGPVVEHMEARLKEDILTEVRQSGGRMLLHREEYNPASNQSSVVGY 895 (1127)
Q Consensus 817 ~nLREE~v~yinG~p~~lR~~~~p~~N~-~~~Gi~~~~ve~~E~~lk~dvl~e~~~~~g~~llh~ee~~~~~~~~~i~~~ 895 (1127)
||||||||+||||+|||||+.++|..|+ ...|++++++|++|++||+|+++|+...+|++++|.+. ... ...+++++
T Consensus 1 vdLReE~h~~ing~p~s~r~~~~~~~~~~~~~g~~~~~~e~~E~~Lk~di~~~~~~~~~~~~~~~e~-~~~-~~~~~~~v 78 (149)
T PF14566_consen 1 VDLREEPHGYINGRPYSWREPDNPANNIKSYPGISADEVEQLEERLKEDILKEAKRFGGRILVHDED-EDG-VVSTVIEV 78 (149)
T ss_dssp EEEE-S-EEEETTEEEEEECGGGTTTTTHHHHHHHHHHHHHHHTHCCCCCEEEEECEECCCTCCCCE-ECE-EEEE-S-E
T ss_pred CcCCcCCEEEECCcEeeecccCCcccccccccCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccccc-ccc-ccccchhh
Confidence 7999999999999999999999999887 66799999999999999999999999999999999542 111 12357778
Q ss_pred ceeccCCCCCCHHHHHHHhhhcCCCceEEEeecCCCCCCCcccHHHHHHhcc--CCCceEEEecCCCCCchhHHHHHHHH
Q 001191 896 WENIFADDVKTPAEVYAALQDEGYNITYRRIPLTRERDALASDIDAIQYCKD--DSAGCYLFVSHTGFGGVAYAMAIICL 973 (1127)
Q Consensus 896 we~v~~~~v~T~~Ev~~~~~~~~~~l~Y~RipitD~~aP~~~d~D~l~~~~~--~~~~~~vf~Cq~GrGRTTt~Mvi~~L 973 (1127)
|+ .+|.+++. ++++++|+||||||+++|.+++||+|+++++ |+++|||||||+|+|||||||||+||
T Consensus 79 ~~------~~~e~~~~-----~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~l 147 (149)
T PF14566_consen 79 WE------EVTEEELV-----EGNGLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDL 147 (149)
T ss_dssp ---------E-HHHHH-----HHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHH
T ss_pred hH------HHHHHHHH-----hcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 87 34444444 4699999999999999999999999999998 88999999999999999999999999
Q ss_pred H
Q 001191 974 R 974 (1127)
Q Consensus 974 ~ 974 (1127)
+
T Consensus 148 i 148 (149)
T PF14566_consen 148 I 148 (149)
T ss_dssp H
T ss_pred h
Confidence 7
No 3
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=97.98 E-value=2.6e-05 Score=81.46 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=48.5
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhc-----CCCCeEEEecCCCCCcchhHHHHH
Q 001191 478 PIKYARVPITDGKAPKTSDFDMLAVNIASA-----SKDTAFVFNCQMGRGRTTTGTVIA 531 (1127)
Q Consensus 478 ~l~Y~RIPitD~~aP~~~d~D~fl~~v~~~-----~~~~~l~FhCq~G~GRTTt~MVi~ 531 (1127)
|+.|+++|++|+..|..++++.|++++.+. .++..+++||.+|.|||-|+++++
T Consensus 61 gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~y 119 (166)
T PTZ00242 61 GIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALA 119 (166)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHH
Confidence 899999999999999999999999998764 358899999999999999976665
No 4
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.83 E-value=2.4e-05 Score=82.64 Aligned_cols=61 Identities=31% Similarity=0.371 Sum_probs=54.7
Q ss_pred cCceEEEeecCCCCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 001191 477 FPIKYARVPITDGKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLKLR 537 (1127)
Q Consensus 477 ~~l~Y~RIPitD~~aP~~~d~D~fl~~v~~~~-~~~~l~FhCq~G~GRTTt~MVi~~Li~~~ 537 (1127)
.++.+..+|+.|+..|+.++++.++.++.++. .+..+++||++|.|||-|-++.+.|....
T Consensus 71 ~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~ 132 (180)
T COG2453 71 DGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGG 132 (180)
T ss_pred CCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcC
Confidence 38899999999999999999999999999985 56699999999999999988888887644
No 5
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=97.82 E-value=6.2e-05 Score=82.36 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=49.2
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHH
Q 001191 478 PIKYARVPITDGKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLK 535 (1127)
Q Consensus 478 ~l~Y~RIPitD~~aP~~~d~D~fl~~v~~~~-~~~~l~FhCq~G~GRTTt~MVi~~Li~ 535 (1127)
|+.|+++|++|+.+|..+.+++|++++.... .+..+.+||.+|.|||-|. +.+.|+.
T Consensus 137 GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl-~AayLI~ 194 (241)
T PTZ00393 137 GINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVL-ASIVLIE 194 (241)
T ss_pred CCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 9999999999999999999999999998753 6778999999999999763 4555553
No 6
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=97.81 E-value=3.9e-05 Score=79.54 Aligned_cols=94 Identities=27% Similarity=0.374 Sum_probs=52.7
Q ss_pred HHHHHHcCCeEEEEeecCCCcccccccccccCcccChHHHHhccccCCcCceEEEeecCCCCCCCcccHHHHHHHHHhcC
Q 001191 429 LREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASAS 508 (1127)
Q Consensus 429 l~ea~~~~g~ilv~~e~~~g~~~~~~e~v~~~~v~T~~Ev~~~~~~~~~~l~Y~RIPitD~~aP~~~d~D~fl~~v~~~~ 508 (1127)
|++++..|....+. -.+++. ...-.|-+..+.+++. |+.++++||+|..+|+.+..-.++..+....
T Consensus 64 L~~Lk~~G~~~Vvt-l~~~~E-------L~~l~Vp~L~~~~~~~-----Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L 130 (168)
T PF05706_consen 64 LERLKDWGAQDVVT-LLTDHE-------LARLGVPDLGEAAQAR-----GIAWHHLPIPDGSAPDFAAAWQILEELAARL 130 (168)
T ss_dssp HHHHHHTT--EEEE--S-HHH-------HHHTT-TTHHHHHHHT-----T-EEEE----TTS---HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEE-eCcHHH-------HHHcCCccHHHHHHHc-----CCEEEecCccCCCCCCHHHHHHHHHHHHHHH
Confidence 35556555544442 233322 1233456777888887 9999999999999998766666666555543
Q ss_pred -CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 001191 509 -KDTAFVFNCQMGRGRTTTGTVIACLLKLR 537 (1127)
Q Consensus 509 -~~~~l~FhCq~G~GRTTt~MVi~~Li~~~ 537 (1127)
.+.-+++||..|.||| +||.++|+...
T Consensus 131 ~~g~~V~vHC~GGlGRt--GlvAAcLLl~L 158 (168)
T PF05706_consen 131 ENGRKVLVHCRGGLGRT--GLVAACLLLEL 158 (168)
T ss_dssp HTT--EEEE-SSSSSHH--HHHHHHHHHHH
T ss_pred HcCCEEEEECCCCCCHH--HHHHHHHHHHH
Confidence 6789999999999998 56777777543
No 7
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=97.60 E-value=8.7e-05 Score=77.60 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=49.3
Q ss_pred cCcCceEEEeecCCCCCCCCCchHHHHHHhccC-----CCCCeEEEEcCCCCCchhHHHHHHHH
Q 001191 56 EGYLVDYERVPVTDEKSPKEQDFDILVDKISQT-----DLNTEVIFNCQMGRGRTTTGMVIATL 114 (1127)
Q Consensus 56 ~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~-----~~~~~l~FnCq~G~GRTT~~Mv~~~l 114 (1127)
.|+. |+++|++|...|..++++.|++++.+. .++..+++||.+|.|||-+.++++.|
T Consensus 60 ~gi~--~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~ 121 (166)
T PTZ00242 60 NGIE--VHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALV 121 (166)
T ss_pred CCCE--EEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4555 999999999999999999999998752 45789999999999999998888744
No 8
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=97.56 E-value=9.2e-05 Score=78.79 Aligned_cols=57 Identities=28% Similarity=0.454 Sum_probs=50.8
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHHH
Q 001191 478 PIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLKL 536 (1127)
Q Consensus 478 ~l~Y~RIPitD~~aP~~~d~D~fl~~v~~~~~~~~l~FhCq~G~GRTTt~MVi~~Li~~ 536 (1127)
|+.-+++|++|.+.|+++.+++||+.+-++.++..+-+||.+|.|||-| +|++.+..
T Consensus 115 Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~--liAc~lmy 171 (225)
T KOG1720|consen 115 GIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGT--LIACYLMY 171 (225)
T ss_pred CceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCchhH--HHHHHHHH
Confidence 8999999999999999999999999999998899999999999999965 55544433
No 9
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=97.52 E-value=0.00014 Score=75.50 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHhhhcCCCceEEEeecCCCCCCCcccHHHHHHhcc---CCCceEEEecCCCCCchhHHHHHHHHHHhhh
Q 001191 902 DDVKTPAEVYAALQDEGYNITYRRIPLTRERDALASDIDAIQYCKD---DSAGCYLFVSHTGFGGVAYAMAIICLRLDAE 978 (1127)
Q Consensus 902 ~~v~T~~Ev~~~~~~~~~~l~Y~RipitD~~aP~~~d~D~l~~~~~---~~~~~~vf~Cq~GrGRTTt~Mvi~~L~~~~~ 978 (1127)
-.|-+..+.+++ .|+.++++||.|..+|..+.+-+++..+. ..+.-++.||..|.||| |||.|||++...
T Consensus 87 l~Vp~L~~~~~~-----~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRt--GlvAAcLLl~L~ 159 (168)
T PF05706_consen 87 LGVPDLGEAAQA-----RGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVHCRGGLGRT--GLVAACLLLELG 159 (168)
T ss_dssp TT-TTHHHHHHH-----TT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHH--HHHHHHHHHHH-
T ss_pred cCCccHHHHHHH-----cCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHH--HHHHHHHHHHHc
Confidence 335567788876 79999999999999997665555554443 56779999999999999 999999986643
No 10
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=97.44 E-value=0.00025 Score=70.93 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=48.4
Q ss_pred CceEEEeecCC-CCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHH
Q 001191 478 PIKYARVPITD-GKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLK 535 (1127)
Q Consensus 478 ~l~Y~RIPitD-~~aP~~~d~D~fl~~v~~~~-~~~~l~FhCq~G~GRTTt~MVi~~Li~ 535 (1127)
++.|.++|+.| ...|..+.++..++++...- .+..+.+||.+|.|||.+.++.+.|..
T Consensus 44 ~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~ 103 (138)
T smart00195 44 GFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY 103 (138)
T ss_pred CCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH
Confidence 88999999999 46677788888888888764 677899999999999999877665543
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=97.41 E-value=0.00021 Score=78.25 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=47.4
Q ss_pred cCcCceEEEeecCCCCCCCCCchHHHHHHhccC-CCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 001191 56 EGYLVDYERVPVTDEKSPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVY 116 (1127)
Q Consensus 56 ~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~-~~~~~l~FnCq~G~GRTT~~Mv~~~li~ 116 (1127)
.|+. |+++|++|+..|..+.++.|++++... ..+..+.+||.+|.|||-+...+ .||.
T Consensus 136 ~GI~--~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~Aa-yLI~ 194 (241)
T PTZ00393 136 AGIN--VHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASI-VLIE 194 (241)
T ss_pred cCCe--EEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHH-HHHH
Confidence 5666 999999999999999999999999753 45678999999999999765443 3443
No 12
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.41 E-value=0.00089 Score=62.69 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=45.8
Q ss_pred eEEEeecCCCCCCCc-ccHHHHHHHHHhcC----CCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 001191 480 KYARVPITDGKAPKT-SDFDMLAVNIASAS----KDTAFVFNCQMGRGRTTTGTVIACLLKLRI 538 (1127)
Q Consensus 480 ~Y~RIPitD~~aP~~-~d~D~fl~~v~~~~----~~~~l~FhCq~G~GRTTt~MVi~~Li~~~~ 538 (1127)
.|+-.+.||+..|.. ++|-.|++.++... .+.++++||.+|.|||.++.+++.++....
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~ 67 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLE 67 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHH
Confidence 456667778889987 67877887776653 367999999999999999977776666543
No 13
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.41 E-value=0.00089 Score=62.69 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=45.8
Q ss_pred eEEEeecCCCCCCCc-ccHHHHHHHHHhcC----CCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 001191 480 KYARVPITDGKAPKT-SDFDMLAVNIASAS----KDTAFVFNCQMGRGRTTTGTVIACLLKLRI 538 (1127)
Q Consensus 480 ~Y~RIPitD~~aP~~-~d~D~fl~~v~~~~----~~~~l~FhCq~G~GRTTt~MVi~~Li~~~~ 538 (1127)
.|+-.+.||+..|.. ++|-.|++.++... .+.++++||.+|.|||.++.+++.++....
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~ 67 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLE 67 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHH
Confidence 456667778889987 67877887776653 367999999999999999977776666543
No 14
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=97.39 E-value=0.00018 Score=71.38 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=50.2
Q ss_pred CceEEEeecCC-CCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHH
Q 001191 478 PIKYARVPITD-GKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLK 535 (1127)
Q Consensus 478 ~l~Y~RIPitD-~~aP~~~d~D~fl~~v~~~~-~~~~l~FhCq~G~GRTTt~MVi~~Li~ 535 (1127)
++.|.++|+.| ...|..+.|+.+++++..+. ++..+.+||++|.|||.+.++.+.|..
T Consensus 39 ~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 98 (133)
T PF00782_consen 39 GIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKK 98 (133)
T ss_dssp TSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHH
Confidence 88999999999 88999999999999999875 778999999999999999655444443
No 15
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.33 E-value=0.00027 Score=74.78 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=51.5
Q ss_pred CCCceEEEeecCCCCCCCcccHHHHHHhcc---CCCceEEEecCCCCCchhHHHHHHHHHH
Q 001191 918 GYNITYRRIPLTRERDALASDIDAIQYCKD---DSAGCYLFVSHTGFGGVAYAMAIICLRL 975 (1127)
Q Consensus 918 ~~~l~Y~RipitD~~aP~~~d~D~l~~~~~---~~~~~~vf~Cq~GrGRTTt~Mvi~~L~~ 975 (1127)
-.++.+..+|+.|+..|..+++++++..+. ..+..++.||++|-|||-|-++.++|.-
T Consensus 70 ~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~ 130 (180)
T COG2453 70 NDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLY 130 (180)
T ss_pred cCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHH
Confidence 368899999999999999999999999886 5566999999999999988888778874
No 16
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=97.09 E-value=0.0008 Score=66.93 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=45.3
Q ss_pred CceEEEeecCCCC-CCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHH
Q 001191 478 PIKYARVPITDGK-APKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLL 534 (1127)
Q Consensus 478 ~l~Y~RIPitD~~-aP~~~d~D~fl~~v~~~~-~~~~l~FhCq~G~GRTTt~MVi~~Li 534 (1127)
++.|..+|+.|.. .+....++.+++++...- .+..+.+||.+|.|||.++++.+.|.
T Consensus 47 ~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~ 105 (139)
T cd00127 47 DFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMK 105 (139)
T ss_pred CceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHH
Confidence 8899999999987 344567788888887653 46789999999999999976655444
No 17
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=97.01 E-value=0.0012 Score=66.14 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=45.8
Q ss_pred CCceEEEeecCC-CCCCCcccHHHHHHhcc---CCCceEEEecCCCCCchhHHHHHHHHH
Q 001191 919 YNITYRRIPLTR-ERDALASDIDAIQYCKD---DSAGCYLFVSHTGFGGVAYAMAIICLR 974 (1127)
Q Consensus 919 ~~l~Y~RipitD-~~aP~~~d~D~l~~~~~---~~~~~~vf~Cq~GrGRTTt~Mvi~~L~ 974 (1127)
.++.|.++|+.| ...|..+.|++.+.++. ..+..+++||+.|.|||.+.++.+.|.
T Consensus 43 ~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~ 102 (138)
T smart00195 43 KGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMK 102 (138)
T ss_pred CCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHH
Confidence 689999999999 45667777777766664 677899999999999998887777665
No 18
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=97.00 E-value=0.00083 Score=71.71 Aligned_cols=57 Identities=11% Similarity=0.163 Sum_probs=51.3
Q ss_pred CCceEEEeecCCCCCCCcccHHHHHHhcc--CCCceEEEecCCCCCchhHHHHHHHHHHhh
Q 001191 919 YNITYRRIPLTRERDALASDIDAIQYCKD--DSAGCYLFVSHTGFGGVAYAMAIICLRLDA 977 (1127)
Q Consensus 919 ~~l~Y~RipitD~~aP~~~d~D~l~~~~~--~~~~~~vf~Cq~GrGRTTt~Mvi~~L~~~~ 977 (1127)
.|+.-+++|+.|+++|.++-+++|+..+. .+++.+-+||.+|-||| +|+|||.++-.
T Consensus 114 ~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRT--G~liAc~lmy~ 172 (225)
T KOG1720|consen 114 AGIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRT--GTLIACYLMYE 172 (225)
T ss_pred cCceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCch--hHHHHHHHHHH
Confidence 68999999999999999999999998876 34899999999999999 89999987554
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=96.91 E-value=0.0012 Score=61.70 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=43.4
Q ss_pred EEEeecCCCCCCCC-CchHHHHHHhccCC----CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 001191 62 YERVPVTDEKSPKE-QDFDILVDKISQTD----LNTEVIFNCQMGRGRTTTGMVIATLVYLN 118 (1127)
Q Consensus 62 Y~RiPitd~~~P~~-~~iD~fi~~v~~~~----~~~~l~FnCq~G~GRTT~~Mv~~~li~~~ 118 (1127)
|+-.+.+|+..|.. ++|-.|++.+++.. .+.++++||.+|.|||.++++++.++..-
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~ 66 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQL 66 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHH
Confidence 56666778888877 56666666665432 36799999999999999998888887753
No 20
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=96.91 E-value=0.0012 Score=61.70 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=43.4
Q ss_pred EEEeecCCCCCCCC-CchHHHHHHhccCC----CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 001191 62 YERVPVTDEKSPKE-QDFDILVDKISQTD----LNTEVIFNCQMGRGRTTTGMVIATLVYLN 118 (1127)
Q Consensus 62 Y~RiPitd~~~P~~-~~iD~fi~~v~~~~----~~~~l~FnCq~G~GRTT~~Mv~~~li~~~ 118 (1127)
|+-.+.+|+..|.. ++|-.|++.+++.. .+.++++||.+|.|||.++++++.++..-
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~ 66 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQL 66 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHH
Confidence 56666778888877 56666666665432 36799999999999999998888887753
No 21
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.82 E-value=0.0018 Score=66.12 Aligned_cols=63 Identities=25% Similarity=0.399 Sum_probs=53.1
Q ss_pred HHhccccCCcCceEEEeecCCC-CCCCcccHHHHHHHHHh-cCCCCeEEEecCCCCCcchhHHHHHHHHHH
Q 001191 468 VFKCLEDDGFPIKYARVPITDG-KAPKTSDFDMLAVNIAS-ASKDTAFVFNCQMGRGRTTTGTVIACLLKL 536 (1127)
Q Consensus 468 v~~~~~~~~~~l~Y~RIPitD~-~aP~~~d~D~fl~~v~~-~~~~~~l~FhCq~G~GRTTt~MVi~~Li~~ 536 (1127)
.++.. |+.+.+||..|. .+|.-+++..=++|+.+ ++.+-..-+||.+||||++| ||.+.||+.
T Consensus 70 ~wk~~-----giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaT-vV~cYLmq~ 134 (183)
T KOG1719|consen 70 LWKNY-----GIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSAT-VVACYLMQH 134 (183)
T ss_pred HHHhc-----cceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchh-hhhhhhhhh
Confidence 55554 999999999997 68999999999999966 46677899999999999999 677777754
No 22
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=96.81 E-value=0.0015 Score=64.66 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=49.6
Q ss_pred cCCCceEEEeecCC-CCCCCcccHHHHHHhcc---CCCceEEEecCCCCCchhHHHHHHHHH
Q 001191 917 EGYNITYRRIPLTR-ERDALASDIDAIQYCKD---DSAGCYLFVSHTGFGGVAYAMAIICLR 974 (1127)
Q Consensus 917 ~~~~l~Y~RipitD-~~aP~~~d~D~l~~~~~---~~~~~~vf~Cq~GrGRTTt~Mvi~~L~ 974 (1127)
...++.|.++|+.| ...|....|+.+.+++. ..+..+.+||++|.|||.+.++.+-|.
T Consensus 36 ~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~ 97 (133)
T PF00782_consen 36 KPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMK 97 (133)
T ss_dssp TTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHH
Confidence 35799999999999 78889999999988776 567899999999999998777766554
No 23
>PRK12361 hypothetical protein; Provisional
Probab=96.72 E-value=0.0021 Score=79.16 Aligned_cols=56 Identities=27% Similarity=0.468 Sum_probs=49.2
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHH
Q 001191 478 PIKYARVPITDGKAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLL 534 (1127)
Q Consensus 478 ~l~Y~RIPitD~~aP~~~d~D~fl~~v~~~~-~~~~l~FhCq~G~GRTTt~MVi~~Li 534 (1127)
++.|.+||+.|+..|..+++++.++++.+.. .+..+.+||.+|+|||.+.++.+ ||
T Consensus 142 ~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ay-Lm 198 (547)
T PRK12361 142 DIDYLNIPILDHSVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAY-LL 198 (547)
T ss_pred CceEEEeecCCCCCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHH-HH
Confidence 6899999999999999999999999998875 56789999999999999965555 44
No 24
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.71 E-value=0.0033 Score=63.55 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=41.8
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHH
Q 001191 478 PIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIA 531 (1127)
Q Consensus 478 ~l~Y~RIPitD~~aP~~~d~D~fl~~v~~~~~~~~l~FhCq~G~GRTTt~MVi~ 531 (1127)
|+.|+.||+.... +.++++..|.+++.+++ .+++|||.+|+ ||...+.++
T Consensus 57 gl~y~~iPv~~~~-~~~~~v~~f~~~~~~~~--~pvL~HC~sG~-Rt~~l~al~ 106 (135)
T TIGR01244 57 GVTYHHQPVTAGD-ITPDDVETFRAAIGAAE--GPVLAYCRSGT-RSSLLWGFR 106 (135)
T ss_pred CCeEEEeecCCCC-CCHHHHHHHHHHHHhCC--CCEEEEcCCCh-HHHHHHHHH
Confidence 9999999999754 78999999999998654 57999999999 977655443
No 25
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=96.62 E-value=0.0025 Score=63.36 Aligned_cols=59 Identities=25% Similarity=0.350 Sum_probs=45.3
Q ss_pred CceEEEeecCCCC-CCCCCchHHHHHHhccC-CCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 59 LVDYERVPVTDEK-SPKEQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 59 ~v~Y~RiPitd~~-~P~~~~iD~fi~~v~~~-~~~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
++.|+.+|+.|.. .+....++.+++++... ..+..+.+||.+|.|||.+.++.+.|...
T Consensus 47 ~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~ 107 (139)
T cd00127 47 DFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTL 107 (139)
T ss_pred CceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHHc
Confidence 3449999999987 33456778888888753 24568999999999999998887766543
No 26
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.29 E-value=0.012 Score=57.64 Aligned_cols=62 Identities=23% Similarity=0.397 Sum_probs=43.3
Q ss_pred cccChHHHHhccccCCcCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHH
Q 001191 461 SVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIA 531 (1127)
Q Consensus 461 ~v~T~~Ev~~~~~~~~~~l~Y~RIPitD~~aP~~~d~D~fl~~v~~~~~~~~l~FhCq~G~GRTTt~MVi~ 531 (1127)
....+++..+.. |+.|+-|||+.. .+.++++++|.+.+.++++ ++++||..|. |.+..+.++
T Consensus 45 ~~~~~~~~a~~~-----Gl~y~~iPv~~~-~~~~~~v~~f~~~l~~~~~--Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 45 SSAEEAAAAEAL-----GLQYVHIPVDGG-AITEEDVEAFADALESLPK--PVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp -HHCHHHHHHHC-----T-EEEE----TT-T--HHHHHHHHHHHHTTTT--SEEEE-SCSH-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCeEEEeecCCC-CCCHHHHHHHHHHHHhCCC--CEEEECCCCh-hHHHHHHHH
Confidence 334567778877 999999999985 5899999999999999865 7999999997 777666654
No 27
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.18 E-value=0.0064 Score=61.50 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=42.3
Q ss_pred CCceEEEeecCCCCCCCcccHHHHHHhccCCCceEEEecCCCCCchhHHHHHH
Q 001191 919 YNITYRRIPLTRERDALASDIDAIQYCKDDSAGCYLFVSHTGFGGVAYAMAII 971 (1127)
Q Consensus 919 ~~l~Y~RipitD~~aP~~~d~D~l~~~~~~~~~~~vf~Cq~GrGRTTt~Mvi~ 971 (1127)
.|+.|+.|||.... +.++++.+|...+.....+++|||.+|+ ||...++++
T Consensus 56 ~gl~y~~iPv~~~~-~~~~~v~~f~~~~~~~~~pvL~HC~sG~-Rt~~l~al~ 106 (135)
T TIGR01244 56 AGVTYHHQPVTAGD-ITPDDVETFRAAIGAAEGPVLAYCRSGT-RSSLLWGFR 106 (135)
T ss_pred CCCeEEEeecCCCC-CCHHHHHHHHHHHHhCCCCEEEEcCCCh-HHHHHHHHH
Confidence 69999999999764 7888999998877755678999999999 976666554
No 28
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=96.16 E-value=0.023 Score=65.06 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=39.1
Q ss_pred CceEEEeecCCCCCCC-cccHHHHHHHHHhc----------CCCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 001191 478 PIKYARVPITDGKAPK-TSDFDMLAVNIASA----------SKDTAFVFNCQMGRGRTTTGTVIACLLKLR 537 (1127)
Q Consensus 478 ~l~Y~RIPitD~~aP~-~~d~D~fl~~v~~~----------~~~~~l~FhCq~G~GRTTt~MVi~~Li~~~ 537 (1127)
.+.|..= ||++.|. +..|-.|+..++.. ...+++++||.+|.|||-||.++-.++...
T Consensus 180 Hfqyt~W--Pd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~ 248 (298)
T PHA02740 180 HFQYTAW--PADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEF 248 (298)
T ss_pred EEeecCC--CCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHH
Confidence 3344444 5888884 44555555444421 235789999999999999998877666544
No 29
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.14 E-value=0.0037 Score=68.87 Aligned_cols=49 Identities=29% Similarity=0.423 Sum_probs=39.5
Q ss_pred eecCCCCCCCcccHHHHHHHHHhc---C-CCCeEEEecCCCCCcchhHHHHHHHHH
Q 001191 484 VPITDGKAPKTSDFDMLAVNIASA---S-KDTAFVFNCQMGRGRTTTGTVIACLLK 535 (1127)
Q Consensus 484 IPitD~~aP~~~d~D~fl~~v~~~---~-~~~~l~FhCq~G~GRTTt~MVi~~Li~ 535 (1127)
.-=.|++.| ++-.+.++++++ | .+.++++||.||.|||.|||++-.|++
T Consensus 191 ~nW~D~~~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~ 243 (302)
T COG5599 191 INWVDFNVP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLR 243 (302)
T ss_pred cCccccCCc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHh
Confidence 345799999 677777777765 4 678999999999999999988877764
No 30
>PRK12361 hypothetical protein; Provisional
Probab=96.09 E-value=0.0072 Score=74.50 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=46.9
Q ss_pred CCceEEEeecCCCCCCCcccHHHHHHhcc---CCCceEEEecCCCCCchhHHHHHHHH
Q 001191 919 YNITYRRIPLTRERDALASDIDAIQYCKD---DSAGCYLFVSHTGFGGVAYAMAIICL 973 (1127)
Q Consensus 919 ~~l~Y~RipitD~~aP~~~d~D~l~~~~~---~~~~~~vf~Cq~GrGRTTt~Mvi~~L 973 (1127)
.++.|.+||+.|..+|..+.+++.++++. ..+..+.+||..|+||+.|.++.+.|
T Consensus 141 ~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm 198 (547)
T PRK12361 141 EDIDYLNIPILDHSVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLL 198 (547)
T ss_pred cCceEEEeecCCCCCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHH
Confidence 37899999999999999999888887775 45678999999999999777666655
No 31
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=96.05 E-value=0.014 Score=61.21 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=31.5
Q ss_pred CCceEEEeecCCCCC----CCcccHHHHHHhc-cCCCceEEEecCCCCCchhHHHHHHHHH
Q 001191 919 YNITYRRIPLTRERD----ALASDIDAIQYCK-DDSAGCYLFVSHTGFGGVAYAMAIICLR 974 (1127)
Q Consensus 919 ~~l~Y~RipitD~~a----P~~~d~D~l~~~~-~~~~~~~vf~Cq~GrGRTTt~Mvi~~L~ 974 (1127)
.++++..+|+..... +.++.+.+.++.+ ++..-++.+||..|..|| |+|++||+
T Consensus 55 ~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rT--G~vvg~lR 113 (164)
T PF03162_consen 55 NGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRT--GLVVGCLR 113 (164)
T ss_dssp TT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHH--HHHHHHHH
T ss_pred cCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcch--hhHHHHHH
Confidence 466677777766654 4556666665554 356679999999999998 99999996
No 32
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=95.91 E-value=0.011 Score=60.55 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=48.5
Q ss_pred CceEEEeecCCC--CCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHH
Q 001191 478 PIKYARVPITDG--KAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLL 534 (1127)
Q Consensus 478 ~l~Y~RIPitD~--~aP~~~d~D~fl~~v~~~~~~~~l~FhCq~G~GRTTt~MVi~~Li 534 (1127)
.+.+.-|-.+|. .+|.++-++..++|+.+.|..+.+++||.+|.+|+|.+-.++-|.
T Consensus 59 ~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~a 117 (172)
T COG5350 59 TLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALA 117 (172)
T ss_pred eEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHh
Confidence 455666666665 489999999999999999999999999999999999887776554
No 33
>PLN02727 NAD kinase
Probab=95.84 E-value=0.014 Score=74.05 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=50.2
Q ss_pred hHHHHhccccCCcCceEEEeecCCCCCCCcccHHHHHHHHHh-cCCCCeEEEecCCCCCcchhHHHHHH
Q 001191 465 PLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIAS-ASKDTAFVFNCQMGRGRTTTGTVIAC 532 (1127)
Q Consensus 465 ~~Ev~~~~~~~~~~l~Y~RIPitD~~aP~~~d~D~fl~~v~~-~~~~~~l~FhCq~G~GRTTt~MVi~~ 532 (1127)
++|..+.. |+.|+-|||++..+|.++++++|.+++++ ++ .++.+||..|.+||.+...+|.
T Consensus 302 e~eAae~~-----GL~yVhIPVs~~~apt~EqVe~fa~~l~~slp--kPVLvHCKSGarRAGamvA~yl 363 (986)
T PLN02727 302 VDDAISSG-----KIEVVKIPVEVRTAPSAEQVEKFASLVSDSSK--KPIYLHSKEGVWRTSAMVSRWK 363 (986)
T ss_pred HHHHHHHc-----CCeEEEeecCCCCCCCHHHHHHHHHHHHhhcC--CCEEEECCCCCchHHHHHHHHH
Confidence 34455554 99999999999999999999999999954 44 4899999999999988655553
No 34
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=95.63 E-value=0.011 Score=60.34 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=47.7
Q ss_pred ceEEEeecCCC--CCCCCCchHHHHHHhccCCCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 60 VDYERVPVTDE--KSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 60 v~Y~RiPitd~--~~P~~~~iD~fi~~v~~~~~~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
|.+.-|-.+++ .+|.++-++..++|+.+.|..+.+++||.+|.+|+|.+-.++.+...
T Consensus 60 l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGISRStA~A~i~a~ala 119 (172)
T COG5350 60 LHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTAAALIAALALA 119 (172)
T ss_pred EeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccccccchHHHHHHHHhhc
Confidence 33444444444 47899999999999999999999999999999999988887777554
No 35
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=95.30 E-value=0.036 Score=61.60 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=44.8
Q ss_pred CceEEEeecCCCCCC-CcccHHHHHHHHHhcCC--CCeEEEecCCCCCcchhHHHHHHHHHHH
Q 001191 478 PIKYARVPITDGKAP-KTSDFDMLAVNIASASK--DTAFVFNCQMGRGRTTTGTVIACLLKLR 537 (1127)
Q Consensus 478 ~l~Y~RIPitD~~aP-~~~d~D~fl~~v~~~~~--~~~l~FhCq~G~GRTTt~MVi~~Li~~~ 537 (1127)
.+.|..-| |+..| ..+++-+|+..++.... ..++++||.+|.|||.++.++..++...
T Consensus 160 ~~~y~~W~--d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l 220 (258)
T smart00194 160 HYHYTNWP--DHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQL 220 (258)
T ss_pred EEeeCCCC--CCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHH
Confidence 44555555 88899 55788888888887643 6899999999999999997777666543
No 36
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=95.14 E-value=0.034 Score=64.07 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=46.1
Q ss_pred CceEEEeecCCCCCCCcc-cHHHHHHHHHhcC--CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 001191 478 PIKYARVPITDGKAPKTS-DFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLR 537 (1127)
Q Consensus 478 ~l~Y~RIPitD~~aP~~~-d~D~fl~~v~~~~--~~~~l~FhCq~G~GRTTt~MVi~~Li~~~ 537 (1127)
=..+++...+||..|+.. .+-+|+..++... ..+|+++||.+|.|||.||+.+=-|++..
T Consensus 252 ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~ 314 (374)
T KOG0791|consen 252 IRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQI 314 (374)
T ss_pred eEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHh
Confidence 346888999999999432 3445555555554 45799999999999999999988888764
No 37
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=95.05 E-value=0.033 Score=63.82 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=41.0
Q ss_pred EEEeecCCCCCCC-cccHHHHHHHHHhc-------------CCCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 001191 481 YARVPITDGKAPK-TSDFDMLAVNIASA-------------SKDTAFVFNCQMGRGRTTTGTVIACLLKLR 537 (1127)
Q Consensus 481 Y~RIPitD~~aP~-~~d~D~fl~~v~~~-------------~~~~~l~FhCq~G~GRTTt~MVi~~Li~~~ 537 (1127)
|+=.-=||++.|. +..|-.|+..++.. ....++++||.+|.|||-||.++..++...
T Consensus 186 ~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~ 256 (303)
T PHA02742 186 FAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKY 256 (303)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHH
Confidence 3333445888885 45777777777642 124789999999999999998887666543
No 38
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=94.96 E-value=0.047 Score=59.51 Aligned_cols=52 Identities=25% Similarity=0.320 Sum_probs=42.0
Q ss_pred cCCCCCCCc-ccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 001191 486 ITDGKAPKT-SDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLLKLR 537 (1127)
Q Consensus 486 itD~~aP~~-~d~D~fl~~v~~~---~~~~~l~FhCq~G~GRTTt~MVi~~Li~~~ 537 (1127)
-+|+..|.. +++.+|++.++.. ..+.++++||.+|.|||.++.++..++...
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~ 193 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRL 193 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHH
Confidence 468888887 7888888888876 357799999999999999997766665543
No 39
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.70 E-value=0.018 Score=63.71 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=37.6
Q ss_pred cCCCCCCCCCchHHHHHHhccC---C-CCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 67 VTDEKSPKEQDFDILVDKISQT---D-LNTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 67 itd~~~P~~~~iD~fi~~v~~~---~-~~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
=.|.+.| ++-.+.++++.+ | ...++++||.||.|||-|+|++-.|++.
T Consensus 193 W~D~~~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~ 244 (302)
T COG5599 193 WVDFNVP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRM 244 (302)
T ss_pred ccccCCc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhc
Confidence 5677777 566666666654 4 5679999999999999999999888773
No 40
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=94.55 E-value=0.061 Score=52.85 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=39.7
Q ss_pred CHHHHHHHhhhcCCCceEEEeecCCCCCCCcccHHHHHHhccCCCceEEEecCCCCCchhHHHHHH
Q 001191 906 TPAEVYAALQDEGYNITYRRIPLTRERDALASDIDAIQYCKDDSAGCYLFVSHTGFGGVAYAMAII 971 (1127)
Q Consensus 906 T~~Ev~~~~~~~~~~l~Y~RipitD~~aP~~~d~D~l~~~~~~~~~~~vf~Cq~GrGRTTt~Mvi~ 971 (1127)
.+++..+. .|+.|+.|||+-. .+.++++++|...+......++.||.+|. |.+..++++
T Consensus 48 ~~~~~a~~-----~Gl~y~~iPv~~~-~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 48 EEAAAAEA-----LGLQYVHIPVDGG-AITEEDVEAFADALESLPKPVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp CHHHHHHH-----CT-EEEE----TT-T--HHHHHHHHHHHHTTTTSEEEE-SCSH-HHHHHHHHH
T ss_pred HHHHHHHH-----cCCeEEEeecCCC-CCCHHHHHHHHHHHHhCCCCEEEECCCCh-hHHHHHHHH
Confidence 34455554 7999999999986 68999999998888865678999999996 777666654
No 41
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=94.40 E-value=0.07 Score=55.47 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=32.6
Q ss_pred cccChHHHHhccccCCcCceEEEeecCCCCCCCcccHHH-----------HHHHHHh---------------c-CCCCeE
Q 001191 461 SVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDM-----------LAVNIAS---------------A-SKDTAF 513 (1127)
Q Consensus 461 ~v~T~~Ev~~~~~~~~~~l~Y~RIPitD~~aP~~~d~D~-----------fl~~v~~---------------~-~~~~~l 513 (1127)
+..|+.|.-+.......++.|+.+|+.+.....+..+.. +..++.. + ..+.++
T Consensus 48 DLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~ 127 (164)
T PF13350_consen 48 DLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAPGPV 127 (164)
T ss_dssp E-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--E
T ss_pred ECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcE
Confidence 567888888876555569999999999887774333322 1122211 1 122699
Q ss_pred EEecCCCCCcchhH
Q 001191 514 VFNCQMGRGRTTTG 527 (1127)
Q Consensus 514 ~FhCq~G~GRTTt~ 527 (1127)
+|||.+|+-||-.+
T Consensus 128 l~HC~aGKDRTG~~ 141 (164)
T PF13350_consen 128 LFHCTAGKDRTGVV 141 (164)
T ss_dssp EEE-SSSSSHHHHH
T ss_pred EEECCCCCccHHHH
Confidence 99999999999654
No 42
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=94.16 E-value=0.055 Score=65.11 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=35.0
Q ss_pred eecCCCCCCCc-ccHHHHHHHHHhcC----------CCCeEEEecCCCCCcchhHHHHHH
Q 001191 484 VPITDGKAPKT-SDFDMLAVNIASAS----------KDTAFVFNCQMGRGRTTTGTVIAC 532 (1127)
Q Consensus 484 IPitD~~aP~~-~d~D~fl~~v~~~~----------~~~~l~FhCq~G~GRTTt~MVi~~ 532 (1127)
.-=|||..|.. +.+..|++.++... .....++||.+|.|||-|+++++.
T Consensus 429 TnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~l 488 (535)
T PRK15375 429 KNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALV 488 (535)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHH
Confidence 44489887754 45778887777642 112238999999999999988764
No 43
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=94.14 E-value=0.043 Score=64.18 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=45.5
Q ss_pred eEEEeecCCCCCCCcc-cHHHHHHHHHh---c-CCCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 001191 480 KYARVPITDGKAPKTS-DFDMLAVNIAS---A-SKDTAFVFNCQMGRGRTTTGTVIACLLKLRID 539 (1127)
Q Consensus 480 ~Y~RIPitD~~aP~~~-d~D~fl~~v~~---~-~~~~~l~FhCq~G~GRTTt~MVi~~Li~~~~~ 539 (1127)
.|+=+.=|||+-|.+. -+-.|++-|.. . ..-.++++||.+|.|||.|++||-.|+-....
T Consensus 416 ~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~ 480 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIRE 480 (600)
T ss_pred hhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHh
Confidence 5777888999999765 56666666543 2 24558999999999999999998777765544
No 44
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=94.07 E-value=0.057 Score=68.93 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=40.3
Q ss_pred ecCCCCCCCcc-cHHHHHHHHHhcC--CCCeEEEecCCCCCcchhHHHHHHHHHHHHhcCCC
Q 001191 485 PITDGKAPKTS-DFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLRIDYGRP 543 (1127)
Q Consensus 485 PitD~~aP~~~-d~D~fl~~v~~~~--~~~~l~FhCq~G~GRTTt~MVi~~Li~~~~~~g~~ 543 (1127)
.=|||+-|++. +|-.||+.|++.- .++++++||.+|.|||.+-..| +++...+++.-|
T Consensus 1035 aWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~-e~~l~lle~Ne~ 1095 (1144)
T KOG0792|consen 1035 AWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILM-ETALCLLEHNEP 1095 (1144)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHH-HHHHHHHhcCCC
Confidence 44788888653 6666667777664 4789999999999999996444 444444554333
No 45
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.97 E-value=0.08 Score=60.21 Aligned_cols=57 Identities=26% Similarity=0.391 Sum_probs=42.4
Q ss_pred CceEEEeecCCCCCCCcc-cHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHH
Q 001191 478 PIKYARVPITDGKAPKTS-DFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLL 534 (1127)
Q Consensus 478 ~l~Y~RIPitD~~aP~~~-d~D~fl~~v~~~~-~~~~l~FhCq~G~GRTTt~MVi~~Li 534 (1127)
+++|.+||+.|.-.+.-. .|+.-++|+..+. .+.-+.+||++|.+|++|..+.|.|.
T Consensus 121 ~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~ 179 (285)
T KOG1716|consen 121 GIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMK 179 (285)
T ss_pred CceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHH
Confidence 789999999995333222 3666667777664 78899999999999999975544443
No 46
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=93.89 E-value=0.092 Score=60.17 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=35.2
Q ss_pred CCCCCCCCCchHHHHHHhccC-------------CCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 68 TDEKSPKEQDFDILVDKISQT-------------DLNTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 68 td~~~P~~~~iD~fi~~v~~~-------------~~~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
||++.| .+.+.|++|++.. ....++++||.+|.|||-++.+|-..+..
T Consensus 187 Pd~gvP--~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~ 247 (298)
T PHA02740 187 PADGFS--HDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATE 247 (298)
T ss_pred CCCCcC--CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHH
Confidence 356665 3566777775321 23469999999999999999998877764
No 47
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=93.84 E-value=0.1 Score=60.42 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=36.8
Q ss_pred CCCCCCC-cccHHHHHHHHHhc-----------C-CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 001191 487 TDGKAPK-TSDFDMLAVNIASA-----------S-KDTAFVFNCQMGRGRTTTGTVIACLLKLR 537 (1127)
Q Consensus 487 tD~~aP~-~~d~D~fl~~v~~~-----------~-~~~~l~FhCq~G~GRTTt~MVi~~Li~~~ 537 (1127)
||++.|. ...|-.|+..++.. + ...++++||.+|.|||-|+.++-.++...
T Consensus 211 pd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l 274 (323)
T PHA02746 211 PDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQL 274 (323)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHH
Confidence 5888886 34666666665431 1 23699999999999999998777666554
No 48
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.75 E-value=0.083 Score=58.47 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=47.6
Q ss_pred cCceEEEeecCCCCCCCcc-cHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 001191 477 FPIKYARVPITDGKAPKTS-DFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 539 (1127)
Q Consensus 477 ~~l~Y~RIPitD~~aP~~~-d~D~fl~~v~~~~-~~~~l~FhCq~G~GRTTt~MVi~~Li~~~~~ 539 (1127)
..++|.+|||.||-.-.-. -|-+-|+||-.+. ++.+..+||.+|..|+-|-.|.|.|-+.++.
T Consensus 216 g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqkl~ls 280 (343)
T KOG1717|consen 216 GEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLS 280 (343)
T ss_pred CceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHHhccc
Confidence 3678999999999654332 2334457777774 8999999999999999998777777665554
No 49
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=93.72 E-value=0.11 Score=59.89 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=37.8
Q ss_pred eecCCCCCCC-cccHHHHHHHHHhc---------C---CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 001191 484 VPITDGKAPK-TSDFDMLAVNIASA---------S---KDTAFVFNCQMGRGRTTTGTVIACLLKLR 537 (1127)
Q Consensus 484 IPitD~~aP~-~~d~D~fl~~v~~~---------~---~~~~l~FhCq~G~GRTTt~MVi~~Li~~~ 537 (1127)
.-=||+..|. ..+|-.|+..++.. + ...++++||.+|.|||-||.++-.++...
T Consensus 190 ~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l 256 (312)
T PHA02747 190 SEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQL 256 (312)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHH
Confidence 3345888885 45666676655431 1 13689999999999999998877666543
No 50
>PLN02727 NAD kinase
Probab=93.68 E-value=0.18 Score=64.44 Aligned_cols=58 Identities=12% Similarity=0.207 Sum_probs=49.5
Q ss_pred CceEEEeecCCCCCCCCCchHHHHHHhccCCCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 59 LVDYERVPVTDEKSPKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 59 ~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~~~~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
+|.|+-||+++-..|.++++++|.+++++. .+.++.+||..|.+||-++.++|.-...
T Consensus 310 GL~yVhIPVs~~~apt~EqVe~fa~~l~~s-lpkPVLvHCKSGarRAGamvA~yl~~~~ 367 (986)
T PLN02727 310 KIEVVKIPVEVRTAPSAEQVEKFASLVSDS-SKKPIYLHSKEGVWRTSAMVSRWKQYMT 367 (986)
T ss_pred CCeEEEeecCCCCCCCHHHHHHHHHHHHhh-cCCCEEEECCCCCchHHHHHHHHHHHHc
Confidence 455999999999999999999999999553 2568999999999999998888876543
No 51
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=93.66 E-value=0.085 Score=58.60 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=39.2
Q ss_pred cCCCCCCC-CCchHHHHHHhccCCC--CCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 67 VTDEKSPK-EQDFDILVDKISQTDL--NTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 67 itd~~~P~-~~~iD~fi~~v~~~~~--~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
=+|++.|. .+.+-.|+..++.... ..++++||.+|.|||-++.++..++..
T Consensus 166 W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~ 219 (258)
T smart00194 166 WPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQ 219 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHH
Confidence 34888884 4667777777775533 679999999999999999888777654
No 52
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=93.43 E-value=0.11 Score=56.55 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=41.0
Q ss_pred cCCCCCCCC-CchHHHHHHhccC---CCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 67 VTDEKSPKE-QDFDILVDKISQT---DLNTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 67 itd~~~P~~-~~iD~fi~~v~~~---~~~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
-+|++.|.. +++-.|++.++.. +...++++||.+|.|||-++.++..++..
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~ 192 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQR 192 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHH
Confidence 568888876 6788888877765 34679999999999999999887777664
No 53
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=93.15 E-value=0.069 Score=68.21 Aligned_cols=48 Identities=25% Similarity=0.467 Sum_probs=35.6
Q ss_pred CCCCCCCCCchHHHHHHhccC-----CCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 68 TDEKSPKEQDFDILVDKISQT-----DLNTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 68 td~~~P~~~~iD~fi~~v~~~-----~~~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
+||+.| +|.+.||+|+.+. ..+++|++||.+|.|||-+-..|=+++..
T Consensus 1037 PDHg~P--~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~l 1089 (1144)
T KOG0792|consen 1037 PDHGVP--DDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCL 1089 (1144)
T ss_pred ccCCCC--CChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHH
Confidence 455554 5677777777654 24789999999999999887777666654
No 54
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.08 E-value=0.12 Score=53.24 Aligned_cols=59 Identities=22% Similarity=0.416 Sum_probs=46.7
Q ss_pred CcCceEEEeecCCC-CCCCCCchHHHHHHhc-cCCCCCeEEEEcCCCCCchhHHHHHHHHH
Q 001191 57 GYLVDYERVPVTDE-KSPKEQDFDILVDKIS-QTDLNTEVIFNCQMGRGRTTTGMVIATLV 115 (1127)
Q Consensus 57 g~~v~Y~RiPitd~-~~P~~~~iD~fi~~v~-~~~~~~~l~FnCq~G~GRTT~~Mv~~~li 115 (1127)
.++|.+.+||..|- ++|.-++|-.=++|+. ..+..-..-+||.+|+||++|-..+|.|.
T Consensus 73 ~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq 133 (183)
T KOG1719|consen 73 NYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQ 133 (183)
T ss_pred hccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhh
Confidence 35677999998885 5788888988888887 45667788899999999998865555553
No 55
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=92.99 E-value=0.058 Score=63.12 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=40.6
Q ss_pred EEEeecCCCCCCCCC-chHHHHHHhc----cCCCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 62 YERVPVTDEKSPKEQ-DFDILVDKIS----QTDLNTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 62 Y~RiPitd~~~P~~~-~iD~fi~~v~----~~~~~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
|+=+.=|||+-|.+. -+=.|++=|. .+..-.+|++||.||.|||-|+.||-.||-.
T Consensus 417 yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~ 477 (600)
T KOG0790|consen 417 YHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQ 477 (600)
T ss_pred hheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHH
Confidence 888899999999843 2323333222 1224568999999999999999998777654
No 56
>PHA02738 hypothetical protein; Provisional
Probab=92.87 E-value=0.15 Score=59.00 Aligned_cols=57 Identities=21% Similarity=0.361 Sum_probs=40.4
Q ss_pred EEEeecCCCCCCCc-ccHHHHHHHHHhc---------C------CCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 001191 481 YARVPITDGKAPKT-SDFDMLAVNIASA---------S------KDTAFVFNCQMGRGRTTTGTVIACLLKLR 537 (1127)
Q Consensus 481 Y~RIPitD~~aP~~-~d~D~fl~~v~~~---------~------~~~~l~FhCq~G~GRTTt~MVi~~Li~~~ 537 (1127)
|+=..=||++.|.. .+|-.|+..++.. . ..+++++||.+|.|||-||.++-.++...
T Consensus 182 ~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~ 254 (320)
T PHA02738 182 FNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRF 254 (320)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHH
Confidence 44444468888854 5666676666531 0 14689999999999999998887777554
No 57
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=92.78 E-value=0.14 Score=58.81 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 91 NTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 91 ~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
..++++||.+|.|||-++.++..++..
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~ 255 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISK 255 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHH
Confidence 478999999999999999998877754
No 58
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=91.90 E-value=0.26 Score=57.08 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=45.2
Q ss_pred ceEEEeecCCCCCCC-CCchHHHHHHhccCC--CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 001191 60 VDYERVPVTDEKSPK-EQDFDILVDKISQTD--LNTEVIFNCQMGRGRTTTGMVIATLVYLN 118 (1127)
Q Consensus 60 v~Y~RiPitd~~~P~-~~~iD~fi~~v~~~~--~~~~l~FnCq~G~GRTT~~Mv~~~li~~~ 118 (1127)
..+++.--+|++.|. ...+=+|+.-++... ..+|+++||.+|+|||-|++.+=-|++.-
T Consensus 253 r~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~ 314 (374)
T KOG0791|consen 253 RHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQI 314 (374)
T ss_pred EEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHh
Confidence 457888899999993 334445555555443 35699999999999999999999998854
No 59
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=91.82 E-value=0.1 Score=62.51 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=46.6
Q ss_pred eEEEeecCCCCCCCcccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 001191 480 KYARVPITDGKAPKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLLKLRI 538 (1127)
Q Consensus 480 ~Y~RIPitD~~aP~~~d~D~fl~~v~~~---~~~~~l~FhCq~G~GRTTt~MVi~~Li~~~~ 538 (1127)
+-.++|.+||.+|.-+.+-.|-+-+-+. .+.--.++||.+|+|||++ ||+|.|+...+
T Consensus 74 ~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~-~icA~L~~~~~ 134 (434)
T KOG2283|consen 74 RVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGV-MICAYLIYSGI 134 (434)
T ss_pred ceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEE-EEeHHHHhhhh
Confidence 3556999999999988887777666554 2556789999999999998 89998887654
No 60
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=91.65 E-value=0.17 Score=58.66 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 91 NTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 91 ~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
..++++||.+|.|||-++.+|-.++..
T Consensus 247 ~~PIvVHCsaGvGRTGtfcaid~~l~~ 273 (323)
T PHA02746 247 LGPIVVHCSAGIGRAGTFCAIDNALEQ 273 (323)
T ss_pred CCCEEEEcCCCCCcchhHHHHHHHHHH
Confidence 369999999999999999888777664
No 61
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=91.64 E-value=0.14 Score=66.21 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=47.1
Q ss_pred EEEeecCCCCCCCc-ccHHHHHHHHHhcC--CCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 001191 481 YARVPITDGKAPKT-SDFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 539 (1127)
Q Consensus 481 Y~RIPitD~~aP~~-~d~D~fl~~v~~~~--~~~~l~FhCq~G~GRTTt~MVi~~Li~~~~~ 539 (1127)
||=--=+||+.|.. ..+-.|+..++... ...++|+||.+|.|||.++.++=.|+.....
T Consensus 698 fhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~ 759 (1087)
T KOG4228|consen 698 FHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLEC 759 (1087)
T ss_pred eeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHh
Confidence 44455689999987 67777777777764 5589999999999999999988888866544
No 62
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=91.53 E-value=0.31 Score=50.66 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=32.5
Q ss_pred CCCHHHHHHHhhhcCCCceEEEeecCCCCCCCcccHHHHH-----------------------------HhccCCCceEE
Q 001191 904 VKTPAEVYAALQDEGYNITYRRIPLTRERDALASDIDAIQ-----------------------------YCKDDSAGCYL 954 (1127)
Q Consensus 904 v~T~~Ev~~~~~~~~~~l~Y~RipitD~~aP~~~d~D~l~-----------------------------~~~~~~~~~~v 954 (1127)
-.|+.|.-..-.....++.|+.+|+.+.....+..+...+ ..+.+...+++
T Consensus 49 LRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l 128 (164)
T PF13350_consen 49 LRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAPGPVL 128 (164)
T ss_dssp -S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EE
T ss_pred CCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEE
Confidence 3467776665334456899999999988777544333211 11113337999
Q ss_pred EecCCCCCchhHHHHHHHHH
Q 001191 955 FVSHTGFGGVAYAMAIICLR 974 (1127)
Q Consensus 955 f~Cq~GrGRTTt~Mvi~~L~ 974 (1127)
|||.+|+-|| |++.+.|+
T Consensus 129 ~HC~aGKDRT--G~~~alll 146 (164)
T PF13350_consen 129 FHCTAGKDRT--GVVAALLL 146 (164)
T ss_dssp EE-SSSSSHH--HHHHHHHH
T ss_pred EECCCCCccH--HHHHHHHH
Confidence 9999999999 66666553
No 63
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=91.51 E-value=0.28 Score=56.52 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 92 TEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 92 ~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
.++++||.+|.|||-+++++-.++..
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~ 255 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQ 255 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHH
Confidence 68999999999999999988777654
No 64
>PHA02738 hypothetical protein; Provisional
Probab=91.43 E-value=0.17 Score=58.49 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 001191 91 NTEVIFNCQMGRGRTTTGMVIATLVYLN 118 (1127)
Q Consensus 91 ~~~l~FnCq~G~GRTT~~Mv~~~li~~~ 118 (1127)
.+++++||.+|.|||-+++++-.++..-
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~ 254 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRF 254 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHH
Confidence 4689999999999999999888887653
No 65
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=91.31 E-value=0.22 Score=56.63 Aligned_cols=59 Identities=27% Similarity=0.445 Sum_probs=44.9
Q ss_pred CceEEEeecCCCCCCC-CCchHHHHHHhccC-CCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 59 LVDYERVPVTDEKSPK-EQDFDILVDKISQT-DLNTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 59 ~v~Y~RiPitd~~~P~-~~~iD~fi~~v~~~-~~~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
.++|.+||+.|...++ -..|+.-++||... ..+.-+.+||++|..||++..+.|.|.+.
T Consensus 121 ~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~ 181 (285)
T KOG1716|consen 121 GIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYE 181 (285)
T ss_pred CceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHc
Confidence 4669999999955544 23466666666643 35788999999999999999888888665
No 66
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=91.14 E-value=0.32 Score=50.89 Aligned_cols=60 Identities=28% Similarity=0.471 Sum_probs=49.0
Q ss_pred CceEEEeecCCC-CCCCcccHHHHHHHHHhcC-CCCeEEEecCCCCCcchhHHHHHHHHHHHH
Q 001191 478 PIKYARVPITDG-KAPKTSDFDMLAVNIASAS-KDTAFVFNCQMGRGRTTTGTVIACLLKLRI 538 (1127)
Q Consensus 478 ~l~Y~RIPitD~-~aP~~~d~D~fl~~v~~~~-~~~~l~FhCq~G~GRTTt~MVi~~Li~~~~ 538 (1127)
++.|.+||+.|. .++...-||.--+.|.+.. ++..-.+||-+|+.|+.+ +.++.|++.|.
T Consensus 60 ~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAs-LClAYLmK~~~ 121 (198)
T KOG1718|consen 60 DIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSAS-LCLAYLMKYHC 121 (198)
T ss_pred CceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHH-HHHHHHHHHcc
Confidence 789999999997 4566667777777777765 778889999999999987 68888887653
No 67
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=91.08 E-value=0.24 Score=59.91 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=32.2
Q ss_pred cCCCCCCCC-CchHHHHHHhccCCC----------CCeEEEEcCCCCCchhHHHHHHHH
Q 001191 67 VTDEKSPKE-QDFDILVDKISQTDL----------NTEVIFNCQMGRGRTTTGMVIATL 114 (1127)
Q Consensus 67 itd~~~P~~-~~iD~fi~~v~~~~~----------~~~l~FnCq~G~GRTT~~Mv~~~l 114 (1127)
=|||+.|.. +.+-.|++.++.... ....++||.+|.|||=++++++.|
T Consensus 431 WPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~ll 489 (535)
T PRK15375 431 WPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVL 489 (535)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHH
Confidence 367666553 346666666665321 122389999999999999999764
No 68
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=90.82 E-value=0.35 Score=52.01 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=42.7
Q ss_pred CceEEEeecCCCCCC-CcccHHHHHHHHHhcC--CCCeEEEecCCCCCcchhHHHHHHHHHHHHh
Q 001191 478 PIKYARVPITDGKAP-KTSDFDMLAVNIASAS--KDTAFVFNCQMGRGRTTTGTVIACLLKLRID 539 (1127)
Q Consensus 478 ~l~Y~RIPitD~~aP-~~~d~D~fl~~v~~~~--~~~~l~FhCq~G~GRTTt~MVi~~Li~~~~~ 539 (1127)
.+.|. .-+|++.| ....+-.|++.++... .+.++++||..|.|||.++.++..++.....
T Consensus 137 ~~~~~--~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~ 199 (235)
T PF00102_consen 137 HFHYT--NWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKK 199 (235)
T ss_dssp EEEEE--SSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHH
T ss_pred ceeee--eccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhcccccc
Confidence 34455 44477777 4555666666665554 7899999999999999999887777765433
No 69
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=87.91 E-value=0.52 Score=49.51 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=34.7
Q ss_pred CceEEEeecCCCCC----CCCCchHHHHHHhccCCCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 001191 59 LVDYERVPVTDEKS----PKEQDFDILVDKISQTDLNTEVIFNCQMGRGRTTTGMVIATLVYLN 118 (1127)
Q Consensus 59 ~v~Y~RiPitd~~~----P~~~~iD~fi~~v~~~~~~~~l~FnCq~G~GRTT~~Mv~~~li~~~ 118 (1127)
++.++.+|+..... +.++.+...++++.+. .+-++.+||..|..||.+-..++-.++.|
T Consensus 56 ~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~-~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W 118 (164)
T PF03162_consen 56 GIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP-RNYPVLIHCNHGKDRTGLVVGCLRKLQGW 118 (164)
T ss_dssp T-EEEE-------GGG----HHHHHHHHHHHH-G-GG-SEEEE-SSSSSHHHHHHHHHHHHTTB
T ss_pred CceEEEeccccccCccccCCHHHHHHHHHHHhCC-CCCCEEEEeCCCCcchhhHHHHHHHHcCC
Confidence 34599999988776 5677777788877665 46799999999999998766666644443
No 70
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=87.09 E-value=3 Score=42.39 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=46.6
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHH
Q 001191 478 PIKYARVPITDGKAPKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVI 530 (1127)
Q Consensus 478 ~l~Y~RIPitD~~aP~~~d~D~fl~~v~~~---~~~~~l~FhCq~G~GRTTt~MVi 530 (1127)
|++-.-.|..|...|..+.+|..++.++.. .++..+-+||-+|.||.-.-..+
T Consensus 62 GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlval 117 (173)
T KOG2836|consen 62 GITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVAL 117 (173)
T ss_pred CceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHH
Confidence 899999999999999999999999988865 47899999999999998764333
No 71
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=85.67 E-value=0.91 Score=48.85 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=38.1
Q ss_pred ecCCCCCCCCCchHHHHHHhccC-----CCCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 001191 66 PVTDEKSPKEQDFDILVDKISQT-----DLNTEVIFNCQMGRGRTTTGMVIATLVYLN 118 (1127)
Q Consensus 66 Pitd~~~P~~~~iD~fi~~v~~~-----~~~~~l~FnCq~G~GRTT~~Mv~~~li~~~ 118 (1127)
.-++++.| .+.+.|+++++.. +.+.++++||..|.|||-++.++..++..-
T Consensus 142 ~W~~~~~P--~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~ 197 (235)
T PF00102_consen 142 NWPDDGVP--PSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQL 197 (235)
T ss_dssp SSSSSSSG--SSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHH
T ss_pred eccccccc--cccchhhhhhhhccccccCCccceEeecccccccccccccchhhcccc
Confidence 44577767 4466666655542 368999999999999999999888887753
No 72
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=84.26 E-value=1.8 Score=51.22 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=38.3
Q ss_pred ceEEEeecCCCCCCC-cccHHHHHHH--HHhcCCCCeEEEecCCCCCcchhHHHHHHHHHH
Q 001191 479 IKYARVPITDGKAPK-TSDFDMLAVN--IASASKDTAFVFNCQMGRGRTTTGTVIACLLKL 536 (1127)
Q Consensus 479 l~Y~RIPitD~~aP~-~~d~D~fl~~--v~~~~~~~~l~FhCq~G~GRTTt~MVi~~Li~~ 536 (1127)
..|+=.--||++.|+ ...+=.++.. ....+...++++||.+|.|||-|+..+-..+..
T Consensus 265 ~~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~ 325 (415)
T KOG0789|consen 265 VHYHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIE 325 (415)
T ss_pred EEEeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHH
Confidence 355556668887776 3344333332 222345789999999999999999777744443
No 73
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=84.22 E-value=1.3 Score=49.50 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=42.3
Q ss_pred CCCceEEEeecCCCCCCCcccHHHH----HHhcc---CCCceEEEecCCCCCchhHHHHHHHHH
Q 001191 918 GYNITYRRIPLTRERDALASDIDAI----QYCKD---DSAGCYLFVSHTGFGGVAYAMAIICLR 974 (1127)
Q Consensus 918 ~~~l~Y~RipitD~~aP~~~d~D~l----~~~~~---~~~~~~vf~Cq~GrGRTTt~Mvi~~L~ 974 (1127)
+....|.+|||+|+-+ +.+++| +.++. .++.++++||.+|-.|+.|-.|.|-|-
T Consensus 215 ~g~f~YkqipisDh~S---qnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMq 275 (343)
T KOG1717|consen 215 NGEFIYKQIPISDHAS---QNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQ 275 (343)
T ss_pred CCceeEEeeeccchhh---hhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHH
Confidence 5678899999999954 345555 34443 567899999999999999988888773
No 74
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=84.10 E-value=0.67 Score=60.20 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=45.2
Q ss_pred CceEEEeecCCCCCCCcccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 001191 478 PIKYARVPITDGKAPKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLLKLR 537 (1127)
Q Consensus 478 ~l~Y~RIPitD~~aP~~~d~D~fl~~v~~~---~~~~~l~FhCq~G~GRTTt~MVi~~Li~~~ 537 (1127)
.+.|..=|.-...+....-++..+...+.. ..+.++++||..|.|||-||..|+.++.+.
T Consensus 983 qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~ 1045 (1087)
T KOG4228|consen 983 QFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERM 1045 (1087)
T ss_pred EEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHH
Confidence 556777777775555555666666666554 358899999999999999998888877654
No 75
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.95 E-value=1.7 Score=43.32 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=41.5
Q ss_pred CCCceEEEeecCCCCCCCcccHHHHHHhccCCCceEEEecCCCCCchhHH
Q 001191 918 GYNITYRRIPLTRERDALASDIDAIQYCKDDSAGCYLFVSHTGFGGVAYA 967 (1127)
Q Consensus 918 ~~~l~Y~RipitD~~aP~~~d~D~l~~~~~~~~~~~vf~Cq~GrGRTTt~ 967 (1127)
..|++|.-|||+-. .+.+.|++.|...+.....++.-||++| .|.|+-
T Consensus 56 ~aGl~y~~iPV~~~-~iT~~dV~~f~~Al~eaegPVlayCrsG-tRs~~l 103 (130)
T COG3453 56 AAGLTYTHIPVTGG-GITEADVEAFQRALDEAEGPVLAYCRSG-TRSLNL 103 (130)
T ss_pred hcCCceEEeecCCC-CCCHHHHHHHHHHHHHhCCCEEeeecCC-chHHHH
Confidence 36999999999976 6889999999999998889999999999 565543
No 76
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=77.52 E-value=3 Score=51.79 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=44.5
Q ss_pred eEEEeecCCCCCCCcccHHHHHHHHHhc-----CCCCeEEEecCCCCCcchhHHHHHHHHHHHHhcCCC
Q 001191 480 KYARVPITDGKAPKTSDFDMLAVNIASA-----SKDTAFVFNCQMGRGRTTTGTVIACLLKLRIDYGRP 543 (1127)
Q Consensus 480 ~Y~RIPitD~~aP~~~d~D~fl~~v~~~-----~~~~~l~FhCq~G~GRTTt~MVi~~Li~~~~~~g~~ 543 (1127)
.||=+.=++++-|.-. ..+++|-|+. ....++++||..|-|||.|. ++.+|+.+++..|..
T Consensus 894 QFHfLSWp~egvPasa--rslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~Y-iliDmvl~Rm~kGak 959 (1004)
T KOG0793|consen 894 QFHFLSWPDEGVPASA--RSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTY-ILIDMVLNRMAKGAK 959 (1004)
T ss_pred eeeeecccccCCccch--HHHHHHHHHhhhhccCCCCceEEEccCCCCcccee-eeHHHHHHHHhccch
Confidence 3555666677777644 4455555543 36789999999999999997 777888888876653
No 77
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=71.18 E-value=6.4 Score=46.58 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=37.7
Q ss_pred ceEEEeecCCCCCCCCCchHHHHHHhc-----cCCCCCeEEEEcCCCCCchhHHHHHHHHHH
Q 001191 60 VDYERVPVTDEKSPKEQDFDILVDKIS-----QTDLNTEVIFNCQMGRGRTTTGMVIATLVY 116 (1127)
Q Consensus 60 v~Y~RiPitd~~~P~~~~iD~fi~~v~-----~~~~~~~l~FnCq~G~GRTT~~Mv~~~li~ 116 (1127)
.+|+=..-+|++.|+ +...++.+++ ..+...++++||.+|.|||-++..+-..+.
T Consensus 265 ~~~~~~~WPd~~~p~--~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~ 324 (415)
T KOG0789|consen 265 VHYHYINWPDHGAPD--SVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALI 324 (415)
T ss_pred EEEeeCCCccccCCc--chHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHH
Confidence 345555566665444 4566666663 233567999999999999999988884444
No 78
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=70.66 E-value=2.2 Score=51.44 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=38.2
Q ss_pred EEEeecCCCCCCCcccHHHHHHhcc-----CCCceEEEecCCCCCchhHHHHHHHHH
Q 001191 923 YRRIPLTRERDALASDIDAIQYCKD-----DSAGCYLFVSHTGFGGVAYAMAIICLR 974 (1127)
Q Consensus 923 Y~RipitD~~aP~~~d~D~l~~~~~-----~~~~~~vf~Cq~GrGRTTt~Mvi~~L~ 974 (1127)
-.++|.+|+.+|.-+-+-.+...+. ++..-.+.||-+|+|||++ ||.|.|+
T Consensus 75 V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~-~icA~L~ 130 (434)
T KOG2283|consen 75 VARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGV-MICAYLI 130 (434)
T ss_pred eeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEE-EEeHHHH
Confidence 4568999999999887777765543 5667889999999999954 4444443
No 79
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.15 E-value=13 Score=37.46 Aligned_cols=55 Identities=16% Similarity=0.357 Sum_probs=42.8
Q ss_pred cChHHHHhccccCCcCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchh
Q 001191 463 QTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTT 526 (1127)
Q Consensus 463 ~T~~Ev~~~~~~~~~~l~Y~RIPitD~~aP~~~d~D~fl~~v~~~~~~~~l~FhCq~G~GRTTt 526 (1127)
..+++..+.. |+.|.-|||+-. -+.++|++.|.+.+-++. -++.-||..| .|+|+
T Consensus 48 ~~i~~aa~~a-----Gl~y~~iPV~~~-~iT~~dV~~f~~Al~eae--gPVlayCrsG-tRs~~ 102 (130)
T COG3453 48 AAIAAAAEAA-----GLTYTHIPVTGG-GITEADVEAFQRALDEAE--GPVLAYCRSG-TRSLN 102 (130)
T ss_pred HHHHHHHHhc-----CCceEEeecCCC-CCCHHHHHHHHHHHHHhC--CCEEeeecCC-chHHH
Confidence 3445555554 999999999984 589999999999888774 3688899999 45554
No 80
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=70.04 E-value=17 Score=36.96 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=37.5
Q ss_pred cccChHHHHhccccCCcCceEEEeec---CCCCCCCcccHHHHHHHHHhc-C-CCCeEEEecCCCCCcchhHHH
Q 001191 461 SVQTPLEVFKCLEDDGFPIKYARVPI---TDGKAPKTSDFDMLAVNIASA-S-KDTAFVFNCQMGRGRTTTGTV 529 (1127)
Q Consensus 461 ~v~T~~Ev~~~~~~~~~~l~Y~RIPi---tD~~aP~~~d~D~fl~~v~~~-~-~~~~l~FhCq~G~GRTTt~MV 529 (1127)
||.|++|+-.-+... -.-||. ++..+-.+ ..|++-+... | .+..|||.|+.|+ |+++|--
T Consensus 43 DVRepeEfk~gh~~~-----siNiPy~~~~~~~~l~~---~eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~A~~ 107 (136)
T KOG1530|consen 43 DVREPEEFKQGHIPA-----SINIPYMSRPGAGALKN---PEFLKQVGSSKPPHDKEIIFGCASGV-RSLKATK 107 (136)
T ss_pred eecCHHHhhccCCcc-----eEeccccccccccccCC---HHHHHHhcccCCCCCCcEEEEeccCc-chhHHHH
Confidence 889999987766543 334444 22222222 3467766665 4 4569999999994 6666543
No 81
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=57.79 E-value=16 Score=38.87 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=40.1
Q ss_pred CCceEEEeecCCC-CCCCcccHHHHHHh---ccCCCceEEEecCCCCCchhHHHHHHHH
Q 001191 919 YNITYRRIPLTRE-RDALASDIDAIQYC---KDDSAGCYLFVSHTGFGGVAYAMAIICL 973 (1127)
Q Consensus 919 ~~l~Y~RipitD~-~aP~~~d~D~l~~~---~~~~~~~~vf~Cq~GrGRTTt~Mvi~~L 973 (1127)
.++.|.+||++|. .++.-.-||..-+. +.-+++.-+.||-+|-.|+.+--..+-|
T Consensus 59 ~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLm 117 (198)
T KOG1718|consen 59 PDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASLCLAYLM 117 (198)
T ss_pred CCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHHHHHHHH
Confidence 5788999999998 45566666655443 3467888999999999999764444433
No 82
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=57.48 E-value=20 Score=36.60 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=46.6
Q ss_pred CCceEEEeecCCCCCCCcccHHHHHHhcc-----CCCceEEEecCCCCCchhHHHHHHHH
Q 001191 919 YNITYRRIPLTRERDALASDIDAIQYCKD-----DSAGCYLFVSHTGFGGVAYAMAIICL 973 (1127)
Q Consensus 919 ~~l~Y~RipitD~~aP~~~d~D~l~~~~~-----~~~~~~vf~Cq~GrGRTTt~Mvi~~L 973 (1127)
-||+-.-.|..|...|.++.+|.-++.++ .++..+-+||-+|-||.-.-.++|.+
T Consensus 61 ~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalali 120 (173)
T KOG2836|consen 61 EGITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALI 120 (173)
T ss_pred cCceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHH
Confidence 38999999999999999999998887764 67889999999999998766666643
No 83
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=50.90 E-value=14 Score=41.41 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=21.8
Q ss_pred CCCceEEEecCCCCCchhHHHHHHHHHH
Q 001191 948 DSAGCYLFVSHTGFGGVAYAMAIICLRL 975 (1127)
Q Consensus 948 ~~~~~~vf~Cq~GrGRTTt~Mvi~~L~~ 975 (1127)
..+.++++||.+|+-|| |+|.|+++.
T Consensus 134 ~e~~PvL~HC~~GkdRT--Gl~~al~r~ 159 (249)
T COG2365 134 AENGPVLIHCTAGKDRT--GLVAALYRK 159 (249)
T ss_pred cccCCEEEecCCCCcch--HHHHHHHHH
Confidence 44599999999999999 888887753
No 84
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=50.73 E-value=33 Score=35.03 Aligned_cols=64 Identities=16% Similarity=0.078 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHhhhcCCCceEEEeec---CCCCCCCcccHHHHHHhcc-CCCceEEEecCCCCCchhHHHHHH
Q 001191 902 DDVKTPAEVYAALQDEGYNITYRRIPL---TRERDALASDIDAIQYCKD-DSAGCYLFVSHTGFGGVAYAMAII 971 (1127)
Q Consensus 902 ~~v~T~~Ev~~~~~~~~~~l~Y~Ripi---tD~~aP~~~d~D~l~~~~~-~~~~~~vf~Cq~GrGRTTt~Mvi~ 971 (1127)
=||.||.|+-..+.. .-.-||. ++.-+-.+.+|-.-+.+.+ +.+..+||.|+.| .|.++|--++
T Consensus 42 lDVRepeEfk~gh~~-----~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG-~Rs~~A~~~l 109 (136)
T KOG1530|consen 42 LDVREPEEFKQGHIP-----ASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASG-VRSLKATKIL 109 (136)
T ss_pred EeecCHHHhhccCCc-----ceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccC-cchhHHHHHH
Confidence 467788887665432 2334454 3333444556655555556 4566999999999 5666655444
No 85
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=49.61 E-value=59 Score=35.94 Aligned_cols=99 Identities=17% Similarity=0.113 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCCCceeeeeeeecCCcccchHHHHHHhhhcCcCceEEEeecCCCCCCCCCchHHHHHHh
Q 001191 6 KEDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKI 85 (1127)
Q Consensus 6 K~Dvl~Ea~~~gg~ilvh~E~~~G~~~~~W~~v~~~~V~T~~Ev~~~~~~~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v 85 (1127)
-.+.++.|++.|..+.+..++..+- ..+..-..++++.....| ++..+++-|.. ...|+++..+++.+
T Consensus 117 ~~~~i~~a~~~G~~v~~~~~~~~~~---------~~~~~~l~~~~~~~~~~g--~~~i~l~Dt~G-~~~P~~v~~li~~l 184 (265)
T cd03174 117 AEEAIEAAKEAGLEVEGSLEDAFGC---------KTDPEYVLEVAKALEEAG--ADEISLKDTVG-LATPEEVAELVKAL 184 (265)
T ss_pred HHHHHHHHHHCCCeEEEEEEeecCC---------CCCHHHHHHHHHHHHHcC--CCEEEechhcC-CcCHHHHHHHHHHH
Confidence 3467888999998888887654441 123333445555554445 44888888855 58899999999999
Q ss_pred ccCCCCCeEEEEcCCCCCchhHHHHHHHHHHHhhhc
Q 001191 86 SQTDLNTEVIFNCQMGRGRTTTGMVIATLVYLNRIG 121 (1127)
Q Consensus 86 ~~~~~~~~l~FnCq~G~GRTT~~Mv~~~li~~~~~~ 121 (1127)
++.-++..|.|||+.-.| |.++..+-.-..|
T Consensus 185 ~~~~~~~~~~~H~Hn~~g-----la~an~laA~~aG 215 (265)
T cd03174 185 REALPDVPLGLHTHNTLG-----LAVANSLAALEAG 215 (265)
T ss_pred HHhCCCCeEEEEeCCCCC-----hHHHHHHHHHHcC
Confidence 976555888888887554 4444444443333
No 86
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=41.97 E-value=39 Score=31.80 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=15.5
Q ss_pred cCCCCeEEEecCCCCCcchhH
Q 001191 507 ASKDTAFVFNCQMGRGRTTTG 527 (1127)
Q Consensus 507 ~~~~~~l~FhCq~G~GRTTt~ 527 (1127)
.+++..++|.|+.| +|+..+
T Consensus 58 ~~~~~~ivvyC~~G-~rs~~a 77 (101)
T cd01518 58 LLKGKKVLMYCTGG-IRCEKA 77 (101)
T ss_pred hcCCCEEEEECCCc-hhHHHH
Confidence 36788999999988 666554
No 87
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=40.01 E-value=61 Score=36.32 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=42.9
Q ss_pred CceEEEeecCCCC----CCCcccHHHHHHHHHhc---CCCCeEEEecCCCCCcchhHHHHHHHH
Q 001191 478 PIKYARVPITDGK----APKTSDFDMLAVNIASA---SKDTAFVFNCQMGRGRTTTGTVIACLL 534 (1127)
Q Consensus 478 ~l~Y~RIPitD~~----aP~~~d~D~fl~~v~~~---~~~~~l~FhCq~G~GRTTt~MVi~~Li 534 (1127)
++.|+-|-|.-++ -|.....|..|....+. ..+-++..||..|+=||.+ +++||=
T Consensus 109 ~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~--lVgclR 170 (249)
T KOG1572|consen 109 GIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGC--LVGCLR 170 (249)
T ss_pred CceEEEEecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhh--hHHHHH
Confidence 7788888887777 78888888888555443 2788999999999999876 666663
No 88
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=37.00 E-value=76 Score=29.71 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=16.6
Q ss_pred HhccCCCCCeEEEEcCCCCCchh
Q 001191 84 KISQTDLNTEVIFNCQMGRGRTT 106 (1127)
Q Consensus 84 ~v~~~~~~~~l~FnCq~G~GRTT 106 (1127)
....+|++..++|.|..|. |+.
T Consensus 54 ~~~~~~~~~~ivv~C~~G~-rs~ 75 (100)
T cd01523 54 ILDQLPDDQEVTVICAKEG-SSQ 75 (100)
T ss_pred HHhhCCCCCeEEEEcCCCC-cHH
Confidence 3456678889999999884 553
No 89
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=34.41 E-value=32 Score=43.37 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=37.4
Q ss_pred EEEeecCCCCCCCCCchHHHHHHhccCC-----CCCeEEEEcCCCCCchhHHHHHHHHHHHh
Q 001191 62 YERVPVTDEKSPKEQDFDILVDKISQTD-----LNTEVIFNCQMGRGRTTTGMVIATLVYLN 118 (1127)
Q Consensus 62 Y~RiPitd~~~P~~~~iD~fi~~v~~~~-----~~~~l~FnCq~G~GRTT~~Mv~~~li~~~ 118 (1127)
||=+-=++++-|. .--.+++|=++.+ ..-+|++||..|.|||-+... .+|+.++
T Consensus 895 FHfLSWp~egvPa--sarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~Yil-iDmvl~R 953 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPA--SARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYIL-IDMVLNR 953 (1004)
T ss_pred eeeecccccCCcc--chHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeee-HHHHHHH
Confidence 5555555666554 4456677666553 568999999999999998754 4666664
No 90
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=33.90 E-value=38 Score=38.02 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=18.9
Q ss_pred CCeEEEecCCCCCcchhHHHHHHH
Q 001191 510 DTAFVFNCQMGRGRTTTGTVIACL 533 (1127)
Q Consensus 510 ~~~l~FhCq~G~GRTTt~MVi~~L 533 (1127)
+-++.+||.+|+=||.++..++-.
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r~ 159 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYRK 159 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHHH
Confidence 589999999999999765555433
No 91
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=32.94 E-value=42 Score=36.45 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 89 DLNTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 89 ~~~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
....+++|+...|.|+|+++-.++.-...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999876543
No 92
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=32.71 E-value=1.2e+02 Score=34.04 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=47.1
Q ss_pred cCceEEEeecCCCC----CCCCCchHHHHHHhccC---CCCCeEEEEcCCCCCchhHHHHHHHHHHHhhh
Q 001191 58 YLVDYERVPVTDEK----SPKEQDFDILVDKISQT---DLNTEVIFNCQMGRGRTTTGMVIATLVYLNRI 120 (1127)
Q Consensus 58 ~~v~Y~RiPitd~~----~P~~~~iD~fi~~v~~~---~~~~~l~FnCq~G~GRTT~~Mv~~~li~~~~~ 120 (1127)
-++.|+-|-|..++ -|.....|..|...-++ ..+.++..||..|.=||-+-.-+.--+++|+.
T Consensus 108 ~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~l 177 (249)
T KOG1572|consen 108 NGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSL 177 (249)
T ss_pred cCceEEEEecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccch
Confidence 34559999999998 89988888887765543 37899999999999998654444444665543
No 93
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=29.29 E-value=54 Score=34.04 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=22.0
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHH
Q 001191 94 VIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 94 l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
.+.|+..|.|+||+++.+|..+..
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~ 25 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALAR 25 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEcCCCCccHHHHHHHHHhcccc
Confidence 478999999999999999999887
No 94
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=29.13 E-value=38 Score=40.50 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=48.0
Q ss_pred CceEEEeecCCCC-CCCcccHHHHHHHHHhc-----CCCCeEEEecCCCCCcchhHHHHHHHHH
Q 001191 478 PIKYARVPITDGK-APKTSDFDMLAVNIASA-----SKDTAFVFNCQMGRGRTTTGTVIACLLK 535 (1127)
Q Consensus 478 ~l~Y~RIPitD~~-aP~~~d~D~fl~~v~~~-----~~~~~l~FhCq~G~GRTTt~MVi~~Li~ 535 (1127)
|+.|.++-..-+. .|+.+.++.|++.+... .++.=+..||-.|.-||.. |++++|+.
T Consensus 86 g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~Nrtgy-LI~~yL~~ 148 (393)
T KOG2386|consen 86 GVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGY-LICAYLAD 148 (393)
T ss_pred ceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccce-eeeeeeee
Confidence 8889999888887 89999999999988764 3678899999999999875 67666663
No 95
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=28.88 E-value=2.2e+02 Score=32.27 Aligned_cols=94 Identities=11% Similarity=0.086 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCeEEEEeeCCCCceeeeeeeecCCcccchHHHHH---HhhhcCcCceEEEeecCCCCCCCCCchHHHHH
Q 001191 7 EDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYE---ELQVEGYLVDYERVPVTDEKSPKEQDFDILVD 83 (1127)
Q Consensus 7 ~Dvl~Ea~~~gg~ilvh~E~~~G~~~~~W~~v~~~~V~T~~Ev~~---~~~~~g~~v~Y~RiPitd~~~P~~~~iD~fi~ 83 (1127)
.+.++.|++.|..|.+.-+..-+ .+++.+.+ .+.. .+++..+|+-|-.. ..|+++-.++.
T Consensus 112 ~~~i~~ak~~G~~v~~~~~~a~~--------------~~~~~~~~~~~~~~~--~g~~~i~l~DT~G~-~~P~~v~~lv~ 174 (266)
T cd07944 112 LPLIKAIKEKGYEVFFNLMAISG--------------YSDEELLELLELVNE--IKPDVFYIVDSFGS-MYPEDIKRIIS 174 (266)
T ss_pred HHHHHHHHHCCCeEEEEEEeecC--------------CCHHHHHHHHHHHHh--CCCCEEEEecCCCC-CCHHHHHHHHH
Confidence 45678888888888777776543 23444433 3333 34457888877664 67889999999
Q ss_pred Hhcc-CCCCCeEEEEcCCCCCchhHHHHHHHHHHHhhhcC
Q 001191 84 KISQ-TDLNTEVIFNCQMGRGRTTTGMVIATLVYLNRIGA 122 (1127)
Q Consensus 84 ~v~~-~~~~~~l~FnCq~G~GRTT~~Mv~~~li~~~~~~~ 122 (1127)
.+++ ++++..|.|||+.- ++|.++.-+-.-+.+.
T Consensus 175 ~l~~~~~~~~~i~~H~Hn~-----~Gla~AN~laA~~aGa 209 (266)
T cd07944 175 LLRSNLDKDIKLGFHAHNN-----LQLALANTLEAIELGV 209 (266)
T ss_pred HHHHhcCCCceEEEEeCCC-----ccHHHHHHHHHHHcCC
Confidence 9885 45457888888864 4455555555544443
No 96
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=28.64 E-value=46 Score=35.75 Aligned_cols=24 Identities=21% Similarity=-0.003 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCCCchhHHHHHHH
Q 001191 90 LNTEVIFNCQMGRGRTTTGMVIAT 113 (1127)
Q Consensus 90 ~~~~l~FnCq~G~GRTT~~Mv~~~ 113 (1127)
+.--+|++|..|+|.||.||=++.
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlal 43 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQAL 43 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHH
Confidence 567899999999999999876553
No 97
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=28.05 E-value=2.8e+02 Score=25.86 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=29.5
Q ss_pred cccChHHHHhccccCCcCceEEEeecCCCCCCCcccHHHH----HHHHHhcCCCCeEEEecCCCCCcch
Q 001191 461 SVQTPLEVFKCLEDDGFPIKYARVPITDGKAPKTSDFDML----AVNIASASKDTAFVFNCQMGRGRTT 525 (1127)
Q Consensus 461 ~v~T~~Ev~~~~~~~~~~l~Y~RIPitD~~aP~~~d~D~f----l~~v~~~~~~~~l~FhCq~G~GRTT 525 (1127)
||.++.|.-..+.+ | -..||+.+ -++.+ -+.....+++..++|+|..| +|+.
T Consensus 20 DvR~~~e~~~ghi~---g--a~~ip~~~-------~~~~~~~~~~~~~~~~~~~~~ivv~C~~G-~rs~ 75 (100)
T cd01523 20 DVRNESDYERWKID---G--ENNTPYFD-------PYFDFLEIEEDILDQLPDDQEVTVICAKE-GSSQ 75 (100)
T ss_pred EeCCHHHHhhcccC---C--Cccccccc-------chHHHHHhhHHHHhhCCCCCeEEEEcCCC-CcHH
Confidence 67788886554422 1 12344433 22222 22344557888999999988 4553
No 98
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=27.60 E-value=2.3e+02 Score=32.52 Aligned_cols=100 Identities=12% Similarity=0.029 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCeEEEEeeCCCCceeeeeeeecCCcccchHHHHHHhhhcCcCceEEEeecCCCCCCCCCchHHHHHHhc
Q 001191 7 EDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKIS 86 (1127)
Q Consensus 7 ~Dvl~Ea~~~gg~ilvh~E~~~G~~~~~W~~v~~~~V~T~~Ev~~~~~~~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v~ 86 (1127)
.++++.|.+.|-.|-+.-|+ -|.-. .+ +..-..++.+.+...| ++..+|+-|-.. -.|.++-.++..++
T Consensus 118 ~~~i~~a~~~G~~v~~~~~d-~~~~~----r~---~~~~~~~~~~~~~~~G--~~~i~l~DT~G~-~~P~~v~~l~~~l~ 186 (280)
T cd07945 118 REVIEYAIKNGIEVNIYLED-WSNGM----RD---SPDYVFQLVDFLSDLP--IKRIMLPDTLGI-LSPFETYTYISDMV 186 (280)
T ss_pred HHHHHHHHhCCCEEEEEEEe-CCCCC----cC---CHHHHHHHHHHHHHcC--CCEEEecCCCCC-CCHHHHHHHHHHHH
Confidence 45688899999888888775 22111 11 2223344444443344 447777777665 56778888998888
Q ss_pred cCCCCCeEEEEcCCCCCchhHHHHHHHHHHHhhhcC
Q 001191 87 QTDLNTEVIFNCQMGRGRTTTGMVIATLVYLNRIGA 122 (1127)
Q Consensus 87 ~~~~~~~l~FnCq~G~GRTT~~Mv~~~li~~~~~~~ 122 (1127)
+.-++..|.|||+.-. +|.++..+-.-+.|.
T Consensus 187 ~~~~~~~i~~H~Hnd~-----Gla~AN~laA~~aGa 217 (280)
T cd07945 187 KRYPNLHFDFHAHNDY-----DLAVANVLAAVKAGI 217 (280)
T ss_pred hhCCCCeEEEEeCCCC-----CHHHHHHHHHHHhCC
Confidence 6545678899998755 566666666655554
No 99
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=26.35 E-value=2.6e+02 Score=32.04 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=63.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeecCCCcccccccccccCcccChHHHHhccccCCcCceEEEeecC
Q 001191 408 EYTGIDRERVERMEARLKEDILREAERYGGAIMVIHETNDGQIFDAWEHVSSESVQTPLEVFKCLEDDGFPIKYARVPIT 487 (1127)
Q Consensus 408 ~~~Gis~~~vE~~E~~Lk~dil~ea~~~~g~ilv~~e~~~g~~~~~~e~v~~~~v~T~~Ev~~~~~~~~~~l~Y~RIPit 487 (1127)
.+.+.+++++.++= .++++.++..|-.+.+.-++ -+... .++++ -..++++.. ...|.+..+|+-|
T Consensus 104 ~~~~~t~~e~l~~~----~~~i~~a~~~G~~v~~~~~d-~~~~~----r~~~~---~~~~~~~~~--~~~G~~~i~l~DT 169 (280)
T cd07945 104 EQLRKTPEEHFADI----REVIEYAIKNGIEVNIYLED-WSNGM----RDSPD---YVFQLVDFL--SDLPIKRIMLPDT 169 (280)
T ss_pred HHHCcCHHHHHHHH----HHHHHHHHhCCCEEEEEEEe-CCCCC----cCCHH---HHHHHHHHH--HHcCCCEEEecCC
Confidence 34578877654322 23467777777766665543 11000 00111 122222222 1237777777777
Q ss_pred CCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHHHH
Q 001191 488 DGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLKLR 537 (1127)
Q Consensus 488 D~~aP~~~d~D~fl~~v~~~~~~~~l~FhCq~G~GRTTt~MVi~~Li~~~ 537 (1127)
- +.-.|.++-.++..+++..++..|.|||+.-. +|.++-.+.-.
T Consensus 170 ~-G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~-----Gla~AN~laA~ 213 (280)
T cd07945 170 L-GILSPFETYTYISDMVKRYPNLHFDFHAHNDY-----DLAVANVLAAV 213 (280)
T ss_pred C-CCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCC-----CHHHHHHHHHH
Confidence 7 45678889999999988666677888887655 45666555443
No 100
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=24.52 E-value=68 Score=32.86 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 93 EVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 93 ~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
..++||..|.|+||++..++..+..
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~ 26 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQ 26 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999999999998764
No 101
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=24.45 E-value=3.4e+02 Score=24.01 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHhh------hhcCChHHHHHHHHHHHHHHHH
Q 001191 611 REALDAIIDRCSALQNIREAVLHYRKVFN------QQHVEPRVRMVALSRGAEYLER 661 (1127)
Q Consensus 611 K~~VD~aId~cs~~~NLReaI~~~r~~~~------~~a~~~~~k~~~~~r~l~yLeR 661 (1127)
...+..|+. +++--|..+||--|++... ....++..|..+..+.-+||.|
T Consensus 6 ~~~~~~Av~-~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~R 61 (69)
T PF04212_consen 6 IELIKKAVE-ADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLER 61 (69)
T ss_dssp HHHHHHHHH-HHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 344444444 4556688888876666543 3345666778899999999988
No 102
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.84 E-value=4.3e+02 Score=30.11 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=38.0
Q ss_pred cCceEEEeecCCCCCCCcccHHHHHHHHHhcCCCCeEEEecCCCCCcchhHHHHHHHHHH
Q 001191 477 FPIKYARVPITDGKAPKTSDFDMLAVNIASASKDTAFVFNCQMGRGRTTTGTVIACLLKL 536 (1127)
Q Consensus 477 ~~l~Y~RIPitD~~aP~~~d~D~fl~~v~~~~~~~~l~FhCq~G~GRTTt~MVi~~Li~~ 536 (1127)
.|.+..+|+-|-. .-.|.++-.++..+++.-++..|.|||+.-.| |.++-.+.-
T Consensus 161 ~Ga~~i~l~DT~G-~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~G-----lA~AN~laA 214 (274)
T cd07938 161 LGCDEISLGDTIG-VATPAQVRRLLEAVLERFPDEKLALHFHDTRG-----QALANILAA 214 (274)
T ss_pred cCCCEEEECCCCC-ccCHHHHHHHHHHHHHHCCCCeEEEEECCCCC-----hHHHHHHHH
Confidence 4777788887774 46788999999999887656777777776553 455544433
No 103
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=23.33 E-value=76 Score=30.56 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.3
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHh
Q 001191 94 VIFNCQMGRGRTTTGMVIATLVYLN 118 (1127)
Q Consensus 94 l~FnCq~G~GRTT~~Mv~~~li~~~ 118 (1127)
.+.+|..|.|+||+++.++.-+...
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~ 27 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKE 27 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhc
Confidence 5789999999999999999998763
No 104
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=22.86 E-value=1.3e+02 Score=34.82 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=38.4
Q ss_pred HHHHhhhcCcCceEEEeecCCCCCCCCCchHHHHHHhccCC---CCCeEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 49 VYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKISQTD---LNTEVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 49 v~~~~~~~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v~~~~---~~~~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
+|......|.+ +|...|... +.+-.++.-+...+ ....-++|+..|.|.||++..++..+..
T Consensus 56 ~~~~a~~~Ga~-~~l~~P~~~------~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~ 120 (322)
T TIGR03815 56 LWRAAAAVGAE-HVAVLPEAE------GWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAAR 120 (322)
T ss_pred HHHHHHHhChh-heeeCCCCH------HHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHh
Confidence 44443334655 588777662 22222333232111 3467789999999999999999998764
No 105
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=22.83 E-value=90 Score=29.30 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 93 EVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 93 ~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
..+.++..|.|+||+++.++..+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~ 26 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR 26 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 3578999999999999999998875
No 106
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=22.56 E-value=4.4e+02 Score=31.34 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCeEEEEeeCCCCceeeeeeeecCCcccchHHHHHHhhhcCcCceEEEeecCCCCCCCCCchHHHHHHhc
Q 001191 7 EDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKIS 86 (1127)
Q Consensus 7 ~Dvl~Ea~~~gg~ilvh~E~~~G~~~~~W~~v~~~~V~T~~Ev~~~~~~~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v~ 86 (1127)
.+.++.|.+.|-.|-+.-|+. ...+..-..++++.....| ++..+++-|- +...|.++-.++..++
T Consensus 115 ~~~i~~ak~~G~~v~~~~eda-----------~r~~~~~l~~~~~~~~~~g--~~~i~l~DT~-G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 115 VEAVEYAKEHGLIVEFSAEDA-----------TRTDIDFLIKVFKRAEEAG--ADRINIADTV-GVLTPQKMEELIKKLK 180 (363)
T ss_pred HHHHHHHHHcCCEEEEEEeec-----------CCCCHHHHHHHHHHHHhCC--CCEEEEeCCC-CccCHHHHHHHHHHHh
Confidence 367788999998887766533 1123333344444443334 4478888877 5678899999999988
Q ss_pred cCCCCCeEEEEcCCCCC
Q 001191 87 QTDLNTEVIFNCQMGRG 103 (1127)
Q Consensus 87 ~~~~~~~l~FnCq~G~G 103 (1127)
+.-+ ..|.|||+.-.|
T Consensus 181 ~~~~-~~l~~H~Hnd~G 196 (363)
T TIGR02090 181 ENVK-LPISVHCHNDFG 196 (363)
T ss_pred cccC-ceEEEEecCCCC
Confidence 6432 667788887554
No 107
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=20.84 E-value=5e+02 Score=29.45 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCeEEEEeeCCCCceeeeeeeecCCcccchHHHHHHhhhcCcCceEEEeecCCCCCCCCCchHHHHHHhc
Q 001191 7 EDIIMEAARFGNKILVTDELPDGQMVDQWEPVSCDSVKAPLDVYEELQVEGYLVDYERVPVTDEKSPKEQDFDILVDKIS 86 (1127)
Q Consensus 7 ~Dvl~Ea~~~gg~ilvh~E~~~G~~~~~W~~v~~~~V~T~~Ev~~~~~~~g~~v~Y~RiPitd~~~P~~~~iD~fi~~v~ 86 (1127)
.++++.|...|-.|-++-|+.-+. +.....++++.+...|.. -.+|+-|-.. -.|.++-.++..++
T Consensus 115 ~~~i~~a~~~G~~v~~~~eda~r~-----------~~~~l~~~~~~~~~~g~~--~i~l~Dt~G~-~~P~~v~~~~~~~~ 180 (262)
T cd07948 115 VEVIEFVKSKGIEVRFSSEDSFRS-----------DLVDLLRVYRAVDKLGVN--RVGIADTVGI-ATPRQVYELVRTLR 180 (262)
T ss_pred HHHHHHHHHCCCeEEEEEEeeCCC-----------CHHHHHHHHHHHHHcCCC--EEEECCcCCC-CCHHHHHHHHHHHH
Confidence 456678888888888888764442 123345666665444544 5566655543 56889999999998
Q ss_pred cCCCCCeEEEEcCCCCC
Q 001191 87 QTDLNTEVIFNCQMGRG 103 (1127)
Q Consensus 87 ~~~~~~~l~FnCq~G~G 103 (1127)
+..+ ..|.|||+.-.|
T Consensus 181 ~~~~-~~i~~H~Hn~~G 196 (262)
T cd07948 181 GVVS-CDIEFHGHNDTG 196 (262)
T ss_pred HhcC-CeEEEEECCCCC
Confidence 7543 667777776554
No 108
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=20.35 E-value=80 Score=33.29 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCchhHHHHHHHHHH
Q 001191 92 TEVIFNCQMGRGRTTTGMVIATLVY 116 (1127)
Q Consensus 92 ~~l~FnCq~G~GRTT~~Mv~~~li~ 116 (1127)
--+|++|..|+|.||.|+.++.-..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~ 27 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL 27 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999988876544
No 109
>PRK10037 cell division protein; Provisional
Probab=20.32 E-value=75 Score=35.20 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCchhHHHHHHHHHHH
Q 001191 93 EVIFNCQMGRGRTTTGMVIATLVYL 117 (1127)
Q Consensus 93 ~l~FnCq~G~GRTT~~Mv~~~li~~ 117 (1127)
.-++|+..|.|+||++..++..+..
T Consensus 4 iav~n~KGGvGKTT~a~nLA~~La~ 28 (250)
T PRK10037 4 LGLQGVRGGVGTTSITAALAWSLQM 28 (250)
T ss_pred EEEecCCCCccHHHHHHHHHHHHHh
Confidence 4688999999999999999988764
No 110
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=20.22 E-value=1.4e+02 Score=27.99 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.0
Q ss_pred CCCCCeEEEEcCCCCCchhHHH
Q 001191 88 TDLNTEVIFNCQMGRGRTTTGM 109 (1127)
Q Consensus 88 ~~~~~~l~FnCq~G~GRTT~~M 109 (1127)
.+++..++|.|+.| +|+..++
T Consensus 58 ~~~~~~ivvyC~~G-~rs~~a~ 78 (101)
T cd01518 58 LLKGKKVLMYCTGG-IRCEKAS 78 (101)
T ss_pred hcCCCEEEEECCCc-hhHHHHH
Confidence 46788999999987 6776553
No 111
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=20.03 E-value=1.2e+02 Score=38.03 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=33.6
Q ss_pred hcCCCceEEEeecCCCC-CCCcccHHHHHHhc---------c--CCCceEEEecCCC
Q 001191 916 DEGYNITYRRIPLTRER-DALASDIDAIQYCK---------D--DSAGCYLFVSHTG 960 (1127)
Q Consensus 916 ~~~~~l~Y~RipitD~~-aP~~~d~D~l~~~~---------~--~~~~~~vf~Cq~G 960 (1127)
..|++=..+|||.+|.. -|..+.-..++..- + |....++||||.|
T Consensus 349 htgp~pv~vri~s~~~r~g~~~~~sssllss~g~~~~~~wh~P~p~S~sli~HcHGG 405 (880)
T KOG4388|consen 349 HTGPGPVLVRIISYDLREGQDSEESSSLLSSNGQRSLELWHRPAPRSRSLIVHCHGG 405 (880)
T ss_pred ccCCCCeEEEeechhhhcCCCchhhHHHHhhcCccccccCCCCCCCCceEEEEecCC
Confidence 46899999999999987 55555555565432 1 4467899999998
Done!