BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001195
         (1126 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q37706|COX2_ARTSF Cytochrome c oxidase subunit 2 OS=Artemia franciscana GN=COII PE=3
           SV=1
          Length = 228

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 34/147 (23%)

Query: 411 LVFIAVPSIAGFYLARFFTKKSLPSYFAFVSLSSMMVIWFVMHNFWDLNIWLAGMSLKTF 470
           LV I + S+ GF+LA  F+ K L  Y                         L G +++T 
Sbjct: 29  LVVILITSLVGFFLAALFSNKFLHRYL------------------------LDGQAIETV 64

Query: 471 CKLIVADVVLAMAVPGLALLPSKLHFMTEVALISHALLLCYIENRFFNYSSIYYYGLEDD 530
             +I A +++A+A+P + L    L+ + E   I +  L   +    + +S  Y Y   +D
Sbjct: 65  WTVIPAIILVAIALPSIRL----LYLIDE---IHNPALTIKVTGHQWYWS--YEYSDLND 115

Query: 531 IMYPSYMVILTTFVGLALVRRLSVDNR 557
           I + SYM I +  +   + R L VDNR
Sbjct: 116 IQFDSYM-IPSNELSTGMYRLLDVDNR 141


>sp|A4FUW8|TXD11_BOVIN Thioredoxin domain-containing protein 11 OS=Bos taurus GN=TXNDC11
           PE=2 SV=1
          Length = 957

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 16/135 (11%)

Query: 168 KWIQIENPSIVLALE--RLLFACLPFTASVIFTWATVSAVGMNNAAYYLMAFNCIFYWLY 225
           K  ++E+P  V  +E  R LF  L  ++S     +  +   +N    YL+  N   +WLY
Sbjct: 538 KKCEVESPGSVPHIEENRYLFPELETSSSSFTGLSCRTNKTLN---IYLLDSN--LFWLY 592

Query: 226 -------SIPRASSFKSKQEVKYHGGEI--PDDNLILSTLESCMHTLNLLFSPLLFHIAS 276
                  S  R   F +  +VK     I  P   L+  TLES +   ++L+SPL  H+  
Sbjct: 593 AERLGAPSAARVKEFATIVDVKEESHYILDPKQALMKFTLESFIQNFSVLYSPLKRHLIG 652

Query: 277 HYSVVFSSAASICDL 291
             S  F+S   I ++
Sbjct: 653 SDSTQFTSQRLITEV 667


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.139    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,222,374
Number of Sequences: 539616
Number of extensions: 15351754
Number of successful extensions: 55915
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 55882
Number of HSP's gapped (non-prelim): 46
length of query: 1126
length of database: 191,569,459
effective HSP length: 128
effective length of query: 998
effective length of database: 122,498,611
effective search space: 122253613778
effective search space used: 122253613778
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 67 (30.4 bits)