Query 001195
Match_columns 1126
No_of_seqs 43 out of 45
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 15:52:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ene_A CLC-EC1, H(+)/CL(-) exc 10.1 9.3E+02 0.032 27.5 9.9 68 736-809 321-391 (446)
2 3mk7_C Cytochrome C oxidase, C 4.8 4.1E+02 0.014 28.8 3.3 59 682-745 12-70 (311)
3 1qle_C Cytochrome C oxidase po 3.9 7.3E+02 0.025 26.9 4.4 46 652-697 142-190 (273)
4 1v54_C Cytochrome C oxidase po 3.8 9.9E+02 0.034 25.6 5.3 47 651-697 130-178 (261)
5 1m56_C Cytochrome C oxidase; m 3.8 8.9E+02 0.03 26.1 4.9 46 652-697 135-183 (266)
6 1fft_C Ubiquinol oxidase; elec 2.8 9.9E+02 0.034 24.5 3.9 46 652-697 70-117 (204)
7 1b4g_A Potassium channel; inac 2.6 6.2E+02 0.021 19.3 1.5 15 226-240 3-17 (30)
8 3dmp_A Uracil phosphoribosyltr 2.5 3.3E+02 0.011 28.7 -0.2 19 987-1005 194-213 (217)
9 2h7a_A Hypothetical protein YC 2.4 4.4E+02 0.015 25.5 0.6 13 347-359 78-90 (110)
10 1xtt_A Probable uracil phospho 2.4 3.5E+02 0.012 28.4 -0.2 18 988-1005 197-215 (216)
No 1
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=10.11 E-value=9.3e+02 Score=27.55 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHhHhhheeeeeccC
Q 001195 736 LIILAILLTLAAVTSIIPIKYIVELRAFYSIVMGIALGIYISA---EFFLQATVLHALIVVTMVGTCVFVVFTHFPS 809 (1126)
Q Consensus 736 LLi~a~l~~l~~~~~~~~~~~~v~lR~~ys~~~G~~lGlYl~~---eyf~~~~~l~vll~~~~v~asvFv~ft~~Ps 809 (1126)
+++.=.+.+..+.+++.|- ..+.=++.+|+.+|.-++. ++|++.. .+.-.++..-.+++|-.-++-|.
T Consensus 321 ~~~~K~~~t~lt~gsG~~G-----Gif~Psl~iGA~~G~~~g~~~~~~~p~~~-~~~~~~a~vGmaa~~a~~~~aPl 391 (446)
T 4ene_A 321 IFVARVITTLLCFSSGAPG-----GIFAPMLALGTVLGTAFGMVAVELFPQYH-LEAGTFAIAGMGALLAASIRAPL 391 (446)
T ss_dssp HHHHHHHHHHHHHTTTCSS-----BSHHHHHHHHHHHHHHHHHHHHHHCGGGT-CCHHHHHHHHHTHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHccCCCc-----chhHHHHHHHHHHHHHHHHHHHHhCCccc-cCHHHHHHHHHHHHHHHHHccHH
Confidence 3444456777788887666 4788888888888755442 2445321 22222322333556666677665
No 2
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=4.82 E-value=4.1e+02 Score=28.83 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=33.2
Q ss_pred HHHHHHHhHhhhhccCCccccccchhhhHhhhccCcccchhhhhcccCCCchhHHHHHHHHHHH
Q 001195 682 LVLVVATGVLFVLMQPPIPLSWTYRSDLIKAARQSADDISIYGFMASKPTWPSWLIILAILLTL 745 (1126)
Q Consensus 682 ~vl~~~~G~ll~llqPp~p~~~~~~~~~~~~~~~e~dD~~iyg~~~~~~~wp~WLLi~a~l~~l 745 (1126)
++++.++|++.+++--.+.-. +++..++-+||-|++.-|= +-.|.|--|+.+++++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~dgi~e~~--nplp~ww~~~f~~~iv~~~ 70 (311)
T 3mk7_C 12 LTLGTIVALFWLIFATRKGES---AGTTDQTMGHAFDGIEEYD--NPLPRWWFLLFIGTLVFGI 70 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTTCC---SSCCCCCCSCCBTTBCBCC--CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccC---CCCCCCCCCCCccChhhcc--CCCChHHHHHHHHHHHHHH
Confidence 455566677666654333311 1112234578888876554 5566666666666666555
No 3
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1
Probab=3.94 E-value=7.3e+02 Score=26.89 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhhhhhhh---ccCchhhhHHHHHHHHHHhHhhhhccC
Q 001195 652 LLGFCIILTGLACVPIVAL---HFSHVLSAKRCLVLVVATGVLFVLMQP 697 (1126)
Q Consensus 652 llG~~~l~~g~~~~Piv~~---h~s~~~~~kR~~vl~~~~G~ll~llqP 697 (1126)
++.+.+|+..-.++=..-+ ..++.+.+++++.+.+.+|+.++.+|=
T Consensus 142 llnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~~L~~Ti~LG~~F~~lQ~ 190 (273)
T 1qle_C 142 LINTLILLLSGVAVTWAHHAFVLEGDRKTTINGLIVAVILGVCFTGLQA 190 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544444433332 235667789999999999999999983
No 4
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=3.84 E-value=9.9e+02 Score=25.59 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhc--cCchhhhHHHHHHHHHHhHhhhhccC
Q 001195 651 LLLGFCIILTGLACVPIVALH--FSHVLSAKRCLVLVVATGVLFVLMQP 697 (1126)
Q Consensus 651 ~llG~~~l~~g~~~~Piv~~h--~s~~~~~kR~~vl~~~~G~ll~llqP 697 (1126)
-++.+.+++..-.++=..-+. .++.+.+++++.+.+.+|+.++.+|=
T Consensus 130 pllnT~iLL~Ss~t~~~A~~a~~~~~~~~~~~~L~~T~~LG~~F~~~Q~ 178 (261)
T 1v54_C 130 PLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQA 178 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666655544444333322 35667899999999999999999983
No 5
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=3.78 E-value=8.9e+02 Score=26.07 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhhhhhhhhc--c-CchhhhHHHHHHHHHHhHhhhhccC
Q 001195 652 LLGFCIILTGLACVPIVALH--F-SHVLSAKRCLVLVVATGVLFVLMQP 697 (1126)
Q Consensus 652 llG~~~l~~g~~~~Piv~~h--~-s~~~~~kR~~vl~~~~G~ll~llqP 697 (1126)
++.+.+|+..-.++=..-+. . ++.+.+++++.+.+.+|+.++.+|=
T Consensus 135 llnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~~L~~Ti~LG~~F~~lQ~ 183 (266)
T 1m56_C 135 LINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQA 183 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55665555444443332222 2 5667889999999999999999983
No 6
>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.25.1.1
Probab=2.78 E-value=9.9e+02 Score=24.49 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhhhhhhhhc--cCchhhhHHHHHHHHHHhHhhhhccC
Q 001195 652 LLGFCIILTGLACVPIVALH--FSHVLSAKRCLVLVVATGVLFVLMQP 697 (1126)
Q Consensus 652 llG~~~l~~g~~~~Piv~~h--~s~~~~~kR~~vl~~~~G~ll~llqP 697 (1126)
++.+.+++..-.++=...+. .++.+.+++++.+.+.+|+.++.+|=
T Consensus 70 ~lnT~iLl~Ss~t~~~A~~a~~~~~~~~~~~~L~~t~~LG~~Fl~~q~ 117 (204)
T 1fft_C 70 LVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFIGMEI 117 (204)
T ss_dssp HHHHHHHGGGTTTTTSGGGTTTTCCGGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554444443333332 34667899999999999999999984
No 7
>1b4g_A Potassium channel; inactivation GATE, phosphorylation; HET: SEP; NMR {Homo sapiens} SCOP: j.12.1.1 PDB: 1b4i_A* 1ztn_A
Probab=2.64 E-value=6.2e+02 Score=19.35 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=11.2
Q ss_pred cccCccccccccccc
Q 001195 226 SIPRASSFKSKQEVK 240 (1126)
Q Consensus 226 ~~P~~SSF~~~~~~~ 240 (1126)
.-|+.|||+.|++..
T Consensus 3 ssvcvSs~~gRk~gn 17 (30)
T 1b4g_A 3 SSVCVSSYRGRKSGN 17 (30)
T ss_dssp TTTBCCCSCSCSSSC
T ss_pred CCccchhhhcccccC
Confidence 347899999877743
No 8
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=2.50 E-value=3.3e+02 Score=28.66 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=16.3
Q ss_pred HhccCcccccccCC-ccccc
Q 001195 987 LLNQDSDFVAGFGD-KQRYF 1005 (1126)
Q Consensus 987 LL~qD~~~f~gl~d-~qRYf 1005 (1126)
=||++..+.+|||| ..|||
T Consensus 194 ~Lne~~yIvPGlGDaGDR~f 213 (217)
T 3dmp_A 194 HLDDHAYIVPGLGDAGDRLF 213 (217)
T ss_dssp EECTTSCEESSCSCHHHHHH
T ss_pred CcCCCCCccCCCCCHHHhhc
Confidence 58999999999999 45887
No 9
>2h7a_A Hypothetical protein YCGL; mixed alpha/beta/alpha sandwich structure, 3-layer (alpha/BE sandwich, beta-sheet layer antiparallel 3124 topology; NMR {Escherichia coli} SCOP: d.350.1.1
Probab=2.40 E-value=4.4e+02 Score=25.47 Aligned_cols=13 Identities=46% Similarity=0.971 Sum_probs=10.2
Q ss_pred cccccccccCCCh
Q 001195 347 HSFGKYIQVPPPV 359 (1126)
Q Consensus 347 ~sFg~YI~lppP~ 359 (1126)
..=|+|.|+|||-
T Consensus 78 ~eqGfyLQmPP~~ 90 (110)
T 2h7a_A 78 TEQGYYLQLPPPP 90 (110)
T ss_dssp HHTSEEEECCCCC
T ss_pred HhCCEEEECCCCh
Confidence 3468899999975
No 10
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=2.37 E-value=3.5e+02 Score=28.40 Aligned_cols=18 Identities=39% Similarity=0.721 Sum_probs=0.0
Q ss_pred hccCcccccccCC-ccccc
Q 001195 988 LNQDSDFVAGFGD-KQRYF 1005 (1126)
Q Consensus 988 L~qD~~~f~gl~d-~qRYf 1005 (1126)
||++.-+.+|||| ..|||
T Consensus 197 Lne~~yIvPGlGDaGDR~f 215 (216)
T 1xtt_A 197 LNNKGYILPGLGDAGDRAF 215 (216)
T ss_dssp ECTTSCEESSCSCHHHHHH
T ss_pred cCCCCCccCCCCChHhhcc
Done!