Query 001195
Match_columns 1126
No_of_seqs 43 out of 45
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 15:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001195.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001195hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1otsa_ f.20.1.1 (A:) Clc chlo 16.8 1.7E+02 0.012 30.7 9.0 68 736-809 320-390 (444)
2 d1v54c_ f.25.1.1 (C:) Mitochon 4.6 3.8E+02 0.028 26.1 5.4 51 646-696 123-175 (259)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 4.0 1.3E+03 0.095 21.4 10.3 58 163-221 138-195 (447)
4 d1v9sa1 c.61.1.1 (A:1-208) Ura 3.5 1.1E+02 0.0077 29.7 -0.2 19 987-1005 186-205 (208)
5 d1xtta1 c.61.1.1 (A:2-216) Ura 3.2 1.2E+02 0.0084 29.5 -0.2 19 987-1005 195-214 (215)
6 d1i5ea_ c.61.1.1 (A:) Uracil P 3.2 1.2E+02 0.0085 29.4 -0.2 27 979-1005 178-205 (208)
7 d1bd3a_ c.61.1.1 (A:) Uracil P 2.9 1.3E+02 0.0096 29.4 -0.2 19 987-1005 202-221 (224)
8 d2h7aa1 d.350.1.1 (A:2-110) Hy 2.4 2.1E+02 0.015 25.4 0.6 13 347-359 77-89 (109)
9 d1o5oa_ c.61.1.1 (A:) Uracil P 2.2 1.8E+02 0.013 27.9 -0.2 19 987-1005 188-207 (210)
10 d1lg7a_ d.213.1.1 (A:) VSV mat 2.1 4.2E+02 0.031 24.9 2.3 15 340-357 78-93 (170)
No 1
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=16.76 E-value=1.7e+02 Score=30.65 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHhHhhheeeeeccC
Q 001195 736 LIILAILLTLAAVTSIIPIKYIVELRAFYSIVMGIALGIYISA---EFFLQATVLHALIVVTMVGTCVFVVFTHFPS 809 (1126)
Q Consensus 736 LLi~a~l~~l~~~~~~~~~~~~v~lR~~ys~~~G~~lGlYl~~---eyf~~~~~l~vll~~~~v~asvFv~ft~~Ps 809 (1126)
+++.=.+.+..+.+++.|= ..+.=++.+|+.+|.-++. +++++.. .+.-.++.+-.+++|-..++.|.
T Consensus 320 ~~~~K~~~t~~t~~~G~~G-----G~f~P~l~iGa~~G~~~~~~~~~~~~~~~-~~~~~~alvGmaa~~a~~~~~Pl 390 (444)
T d1otsa_ 320 IFVARVITTLLCFSSGAPG-----GIFAPMLALGTVLGTAFGMVAVELFPQYH-LEAGTFAIAGMGALLAASIRAPL 390 (444)
T ss_dssp HHHHHHHHHHHHHHTTCSS-----BSHHHHHHHHHHHHHHHHHHHHHHCGGGT-CCHHHHHHHHHTHHHHHTSCCHH
T ss_pred HHHHHHHHHHHHhhcCCCC-----CeehHHHHHHHHHHHHHHHHHHHhCCccc-CCHHHHHHHHHHHHHHHHHhhHH
Confidence 3334455666777777665 4788888888888875553 3444322 22222222334456666677665
No 2
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.61 E-value=3.8e+02 Score=26.14 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=37.6
Q ss_pred CCCchHHHHHHHHHHhhhhhhhhhhc--cCchhhhHHHHHHHHHHhHhhhhcc
Q 001195 646 PPSDGLLLGFCIILTGLACVPIVALH--FSHVLSAKRCLVLVVATGVLFVLMQ 696 (1126)
Q Consensus 646 ~psd~~llG~~~l~~g~~~~Piv~~h--~s~~~~~kR~~vl~~~~G~ll~llq 696 (1126)
.|.+-.++.+.+++..-.++=..-+. .++.+..++.+...+++|++++..|
T Consensus 123 ~~~~lpllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q 175 (259)
T d1v54c_ 123 NPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQ 175 (259)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHH
Confidence 44456678887777766655444333 3567778899999999999999998
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.00 E-value=1.3e+03 Score=21.45 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=30.9
Q ss_pred hhcccceeeeccchHHHHHHHHhhhcCcchhHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 001195 163 ASLQFKWIQIENPSIVLALERLLFACLPFTASVIFTWATVSAVGMNNAAYYLMAFNCIF 221 (1126)
Q Consensus 163 asLQFrWlq~~~P~~a~alERlLFA~~P~~a~~l~TW~~va~vG~~~ApyYl~~~l~~~ 221 (1126)
..+.-+|...++=+.+..+-..........++.+.. ......+..+..|+.....++.
T Consensus 138 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~-~~~~~~~~w~~~~~~~~~~~~~ 195 (447)
T d1pw4a_ 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL-LGMAWFNDWHAALYMPAFCAIL 195 (447)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH-HHHHHTCCSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccccccccchhhhhhhhhhh-hHhhhhhcccccchhhhhhHHH
Confidence 334556666665555555555555555555544444 3344445556666665544433
No 4
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]}
Probab=3.46 E-value=1.1e+02 Score=29.67 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=16.5
Q ss_pred HhccCcccccccCC-ccccc
Q 001195 987 LLNQDSDFVAGFGD-KQRYF 1005 (1126)
Q Consensus 987 LL~qD~~~f~gl~d-~qRYf 1005 (1126)
-||++..+.+|+|| ..|||
T Consensus 186 ~Lne~~yIvPGlGDaGDR~f 205 (208)
T d1v9sa1 186 RLNDHGYIVPGLGDAGDRIY 205 (208)
T ss_dssp EECTTSCEESSCSCHHHHHH
T ss_pred CcCCCCeECCCCCChHHhcc
Confidence 48999999999999 55987
No 5
>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus solfataricus [TaxId: 2287]}
Probab=3.21 E-value=1.2e+02 Score=29.51 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=16.4
Q ss_pred HhccCcccccccCC-ccccc
Q 001195 987 LLNQDSDFVAGFGD-KQRYF 1005 (1126)
Q Consensus 987 LL~qD~~~f~gl~d-~qRYf 1005 (1126)
-||+|..+.+|+|| ..|||
T Consensus 195 ~Ln~~gyIvPGlGDaGDR~f 214 (215)
T d1xtta1 195 ELNNKGYILPGLGDAGDRAF 214 (215)
T ss_dssp EECTTSCEESSCSCHHHHHH
T ss_pred CcCCCCcCcCCCCChhhhhc
Confidence 57999999999999 55987
No 6
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]}
Probab=3.18 E-value=1.2e+02 Score=29.41 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=19.3
Q ss_pred hhHHHHHHHhccCcccccccCC-ccccc
Q 001195 979 FFLAPILLLLNQDSDFVAGFGD-KQRYF 1005 (1126)
Q Consensus 979 f~LAPILLLL~qD~~~f~gl~d-~qRYf 1005 (1126)
++++-|==-||++..+.+|||| ..|||
T Consensus 178 I~t~~iD~~Ln~~~yIvPGlGDaGDR~f 205 (208)
T d1i5ea_ 178 IYIAALDERLNDHGYIVPGLGDAGDRLF 205 (208)
T ss_dssp EEESEECCEECTTCCEESSCSCHHHHHH
T ss_pred EEEEEeCCCcCCCCcCCCCCCCHHHhcc
Confidence 3333333348999999999999 55987
No 7
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]}
Probab=2.89 E-value=1.3e+02 Score=29.37 Aligned_cols=19 Identities=47% Similarity=0.779 Sum_probs=16.0
Q ss_pred HhccCcccccccCC-ccccc
Q 001195 987 LLNQDSDFVAGFGD-KQRYF 1005 (1126)
Q Consensus 987 LL~qD~~~f~gl~d-~qRYf 1005 (1126)
=||++..+.+|||| ..|||
T Consensus 202 ~Ln~~~yIvPGlGDaGDR~f 221 (224)
T d1bd3a_ 202 CLNSRYYIVPGIGDFGDRYF 221 (224)
T ss_dssp EECTTSCEESCCSCHHHHHH
T ss_pred ccCCCCccCCCCCcHHHhhc
Confidence 37889999999999 55887
No 8
>d2h7aa1 d.350.1.1 (A:2-110) Hypothetical protein YcgL {Escherichia coli [TaxId: 562]}
Probab=2.38 E-value=2.1e+02 Score=25.40 Aligned_cols=13 Identities=46% Similarity=0.971 Sum_probs=10.3
Q ss_pred cccccccccCCCh
Q 001195 347 HSFGKYIQVPPPV 359 (1126)
Q Consensus 347 ~sFg~YI~lppP~ 359 (1126)
..=|+|.|+|||-
T Consensus 77 ~~qGfyLQmPPp~ 89 (109)
T d2h7aa1 77 TEQGYYLQLPPPP 89 (109)
T ss_dssp HHTSEEEECCCCC
T ss_pred HhCCEEEECCCCc
Confidence 3468899999885
No 9
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]}
Probab=2.18 E-value=1.8e+02 Score=27.87 Aligned_cols=19 Identities=37% Similarity=0.707 Sum_probs=15.8
Q ss_pred HhccCcccccccCC-ccccc
Q 001195 987 LLNQDSDFVAGFGD-KQRYF 1005 (1126)
Q Consensus 987 LL~qD~~~f~gl~d-~qRYf 1005 (1126)
=||++..+.+|+|| ..|||
T Consensus 188 ~Lne~~yIvPGlGDaGDR~f 207 (210)
T d1o5oa_ 188 RLNDHGYIIPGLGDAGDRLF 207 (210)
T ss_dssp EECTTSCEESSCSCHHHHHH
T ss_pred CcCCCCCCCCCCCCHHHhhc
Confidence 57888889999999 55887
No 10
>d1lg7a_ d.213.1.1 (A:) VSV matrix protein {Vesicular stomatitis virus, VSV [TaxId: 11276]}
Probab=2.08 E-value=4.2e+02 Score=24.90 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=11.7
Q ss_pred eeEE-EEecccccccccCC
Q 001195 340 LEIR-VVFHSFGKYIQVPP 357 (1126)
Q Consensus 340 lE~R-VvF~sFg~YI~lpp 357 (1126)
.|+| .|+|++| +.||
T Consensus 78 ~qGr~~vpHrlG---~~Pp 93 (170)
T d1lg7a_ 78 CEGRAYLPHRMG---KTPP 93 (170)
T ss_dssp EEEEEEEEECSC---CCCC
T ss_pred ecceEEeecccC---CCCc
Confidence 5567 8999999 6666
Done!