BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001196
(1125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q498H0|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis
GN=pds5b-a PE=1 SV=1
Length = 1448
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 106/447 (23%), Positives = 209/447 (46%), Gaps = 30/447 (6%)
Query: 70 QFMQSCMDILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQL 127
Q +++ +++L +L+ P+ E E L+ LK ++E + E L + G I E
Sbjct: 644 QAIRAGLELLKVLSFTHPISFHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDF 703
Query: 128 AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLE--EKTH 185
S++ +L++ +G RQAKY++H + AI + + +++ L L+
Sbjct: 704 PHIRSALLPVLQQKAKKGPPRQAKYSIHCIQAIFSSKETQ-FAQIFEPLHKSLDPGNPEQ 762
Query: 186 LPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELC 241
L L S+G IAQ A F +S + F+ +L T W D+ S
Sbjct: 763 LITSLVSIGHIAQLAPDQFTAPLKSMVATFVVKDLLMTDRLPGKKTTKLWVSDDEVSTET 822
Query: 242 LLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLAS 301
+KI IK +V+ L +K+ + G L ++ + + G+++E + S D + LRLA+
Sbjct: 823 KVKIQAIKMMVRWLLGMKNNLSKSGNSTLRLLMAILHTDGDLTEHGKLSKPDMSRLRLAA 882
Query: 302 AKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA-- 357
A A+++L+++ + I ++ + L Q ++LF K+H+ + L +Y
Sbjct: 883 ASAIVKLAQEPCYHEIITLEQYQLCALVINDECYQVRQLFAQKIHKGLSRLRLPLEYMAI 942
Query: 358 CAFLFGITESKSPEFEEE---KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYL 414
CA +K P E +Q L I + + + +V F+ PEY++PY
Sbjct: 943 CALC-----AKDPVKERRAHARQCLVKNINVRREYLKQHAAVSEKL--FSLLPEYVVPYT 995
Query: 415 VHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFR 474
VH AH PD + +D++ + + L+F++ +L+ K+E+ ++ I ++ +
Sbjct: 996 VHLLAHD--PDYVKVQDIEQLKDIKECLWFVLEILMSKNEN-----NSHAFIRKMVEYIK 1048
Query: 475 SIKCSEDIVDAAKSKNSHAICDLGLSI 501
K ++ D ++ + +CD+ ++I
Sbjct: 1049 QTKDGQNPDDQKMNEKMYTVCDVAMNI 1075
>sp|Q5F3U9|PDS5B_CHICK Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus
GN=PDS5B PE=2 SV=3
Length = 1412
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 111/450 (24%), Positives = 208/450 (46%), Gaps = 36/450 (8%)
Query: 70 QFMQSCMDILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQL 127
Q +++ +++L +L+ P+ E E L+ LK ++E + E L + G I E
Sbjct: 644 QAIRAGLELLKVLSFTHPISFHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDF 703
Query: 128 AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--H 185
S++ +L +G RQAKYA+H + AI + + +++ L L+ H
Sbjct: 704 PHIRSALLPVLHHKAKKGPPRQAKYAIHCINAIFSSKETQ-FAQIFEPLHKSLDPSNFEH 762
Query: 186 LPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELC 241
L L ++G IA A F +S + FI +L T W ++ S
Sbjct: 763 LITPLVTIGHIAMLAPDQFAAPLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEEVSPET 822
Query: 242 LLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLAS 301
L+KI IK +V+ L +K+ H + G L + + S G+++E + S D + LRLA+
Sbjct: 823 LVKIQAIKMMVRWLLGMKNNHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAA 882
Query: 302 AKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA-- 357
A+++L+++ + I ++ + L Q +++F K+H+ + L +Y
Sbjct: 883 GSAIVKLAQEPCYHEIITLEQYQLCALAINDECYQVRQIFAQKLHKGLSRLRLPLEYMAI 942
Query: 358 CAFLFGITESKSPEFEEE---KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYL 414
CA +K P E +Q L I + + + +V S PEY++PY
Sbjct: 943 CALC-----AKDPVKERRAHARQCLVKNINVRREYLKQHAAVSEKLLSL--LPEYVVPYT 995
Query: 415 VHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFR 474
+H AH PD + +D++ + + L+FI+ +L+ K+E+ S + I +
Sbjct: 996 IHLLAHD--PDYVKVQDIEQLKDIKECLWFILEILMAKNEN--------NSHAFIRKMVE 1045
Query: 475 SIKCSEDIV---DAAKSKNSHAICDLGLSI 501
+IK ++D DA ++ + +CD+ ++I
Sbjct: 1046 NIKQTKDAQGPDDAKMNEKLYTVCDVAMNI 1075
>sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis
GN=pds5b-b PE=2 SV=2
Length = 1464
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 106/448 (23%), Positives = 214/448 (47%), Gaps = 32/448 (7%)
Query: 70 QFMQSCMDILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQL 127
Q +++ +++L +L+ P+ E E L+ LK ++E + E L + G I E
Sbjct: 644 QAIRAGLELLKVLSFTHPISFHSAETFESLLACLKMDDEKVAEAALQIFKNTGNKIEEDF 703
Query: 128 AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLE--EKTH 185
S++ +L++ +GS RQAKY++H + AI + + +++ L L+
Sbjct: 704 PHIRSALLPVLQQKAKKGSPRQAKYSIHCIHAIFSSKETQ-FAQIFEPLHKSLDPGNPEQ 762
Query: 186 LPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELC 241
L L ++G IAQ A F +S + F+ +L T W D+ S+
Sbjct: 763 LITSLVTIGHIAQLAPDQFTAPLKSMVATFVVKDLLMSDQLPGKKTTKLWVPDDEVSQET 822
Query: 242 LLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRLA 300
++KI IK +V+ L +K+ + G + L +L ++L + G+++E + S D + LRLA
Sbjct: 823 MVKIQAIKMMVRWLLGMKNNLSKSG-NSTLRLLTAILHTDGDLTEHGKLSKPDMSRLRLA 881
Query: 301 SAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA- 357
+ A+++L+++ + I ++ + L Q ++LF K+H+ + L +Y
Sbjct: 882 AGSAIVKLAQEPCYHEIITLEQYQLCALVINDECYQVRQLFAQKLHKGLSRLRLPLEYMA 941
Query: 358 -CAFLFGITESKSPEFEEE---KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPY 413
CA +K P E +Q L I + + + +V F+ PEY++PY
Sbjct: 942 ICALC-----AKDPVKERRAHARQCLVKNINVRREYLKQHAAVSEKL--FSLLPEYVVPY 994
Query: 414 LVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIF 473
VH H PD + +D++ + + L+F++ +L+ K+E+ ++ I ++
Sbjct: 995 TVHLLTHD--PDYVKVQDIEQLKDIKECLWFVLEILMSKNEN-----NSHAFIRKMVEYI 1047
Query: 474 RSIKCSEDIVDAAKSKNSHAICDLGLSI 501
+ K +++ D ++ + +CD+ ++I
Sbjct: 1048 KQTKDAQNPDDQKMNEKMYTVCDVAMNI 1075
>sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens
GN=PDS5B PE=1 SV=1
Length = 1447
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 110/450 (24%), Positives = 208/450 (46%), Gaps = 36/450 (8%)
Query: 70 QFMQSCMDILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQL 127
Q +++ +++L +L+ P+ E E L+ LK ++E + E L + G I E
Sbjct: 644 QAIRAGLELLKVLSFTHPISFHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDF 703
Query: 128 AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--H 185
S++ +L +G RQAKYA+H + AI + + +++ L L+ H
Sbjct: 704 PHIRSALLPVLHHKSKKGPPRQAKYAIHCIHAIFSSKETQ-FAQIFEPLHKSLDPSNLEH 762
Query: 186 LPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELC 241
L L ++G IA A F +S + FI +L T W ++ S
Sbjct: 763 LITPLVTIGHIALLAPDQFAAPLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEEVSPET 822
Query: 242 LLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLAS 301
++KI IK +V+ L +K+ H + G L + + S G+++E + S D + LRLA+
Sbjct: 823 MVKIQAIKMMVRWLLGMKNNHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAA 882
Query: 302 AKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA-- 357
A+++L+++ + I ++ + L Q +++F K+H+ + L +Y
Sbjct: 883 GSAIVKLAQEPCYHEIITLEQYQLCALAINDECYQVRQVFAQKLHKGLSRLRLPLEYMAI 942
Query: 358 CAFLFGITESKSPEFEEE---KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYL 414
CA +K P E +Q L I + + + +V S PEY++PY
Sbjct: 943 CALC-----AKDPVKERRAHARQCLVKNINVRREYLKQHAAVSEKLLSL--LPEYVVPYT 995
Query: 415 VHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFR 474
+H AH PD + +D++ + V L+F++ +L+ K+E+ S + I +
Sbjct: 996 IHLLAHD--PDYVKVQDIEQLKDVKECLWFVLEILMAKNEN--------NSHAFIRKMVE 1045
Query: 475 SIKCSEDIV---DAAKSKNSHAICDLGLSI 501
+IK ++D DA ++ + +CD+ ++I
Sbjct: 1046 NIKQTKDAQGPDDAKMNEKLYTVCDVAMNI 1075
>sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus
GN=Pds5b PE=1 SV=1
Length = 1446
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 109/450 (24%), Positives = 207/450 (46%), Gaps = 36/450 (8%)
Query: 70 QFMQSCMDILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQL 127
Q +++ +++L +L+ P+ E E L+ LK ++E + E L + G I E
Sbjct: 644 QAIRAGLELLKVLSFTHPISFHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDF 703
Query: 128 AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--H 185
S++ +L +G RQAKYA+H + AI + + +++ L L+ H
Sbjct: 704 PHIRSALLPVLHHKSKKGPPRQAKYAIHCIHAIFSSKETQ-FAQIFEPLHKSLDPSNLEH 762
Query: 186 LPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELC 241
L L ++G IA A F +S + FI +L T W ++ S
Sbjct: 763 LITPLVTIGHIALLAPDQFAAPLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEEVSPET 822
Query: 242 LLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLAS 301
++KI IK +V+ L +K+ H + G L + + S G+++E + S D + LRLA+
Sbjct: 823 MVKIQAIKMMVRWLLGMKNNHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAA 882
Query: 302 AKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA-- 357
A+++L+++ + I ++ + L Q +++F K+H+ + L +Y
Sbjct: 883 GSAIVKLAQEPCYHEIITLEQYQLCALAINDECYQVRQVFAQKLHKGLSRLRLPLEYMAI 942
Query: 358 CAFLFGITESKSPEFEEE---KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYL 414
CA +K P E +Q L I + + + +V S PEY++PY
Sbjct: 943 CALC-----AKDPVKERRAHARQCLVKNITVRREYLKQHAAVSEKLLSL--LPEYVVPYT 995
Query: 415 VHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFR 474
+H AH PD + +D++ + V L+F++ +L+ K+E+ S + I +
Sbjct: 996 IHLLAHD--PDYVKVQDIEQLKDVKECLWFVLEILMAKNEN--------NSHAFIRKMVE 1045
Query: 475 SIKCSEDIV---DAAKSKNSHAICDLGLSI 501
+IK ++D D ++ + +CD+ ++I
Sbjct: 1046 NIKQTKDAQGPDDTKMNEKLYTVCDVAMNI 1075
>sp|Q6TRW4|PDS5B_RAT Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus
GN=Pds5b PE=2 SV=2
Length = 1447
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 109/450 (24%), Positives = 207/450 (46%), Gaps = 36/450 (8%)
Query: 70 QFMQSCMDILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQL 127
Q +++ +++L +L+ P+ E E L+ LK ++E + E L + G I E
Sbjct: 644 QAIRAGLELLKVLSFTHPISFHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDF 703
Query: 128 AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--H 185
S++ +L +G RQAKYA+H + AI + + +++ L L+ H
Sbjct: 704 PHIRSALLPVLHHKSKKGPPRQAKYAIHCIHAIFSSKETQ-FAQIFEPLHKSLDPSNLEH 762
Query: 186 LPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELC 241
L L ++G IA A F +S + FI +L T W ++ S
Sbjct: 763 LITPLVTIGHIALLAPDQFAAPLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEEVSPET 822
Query: 242 LLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLAS 301
++KI IK +V+ L +K+ H + G L + + S G+++E + S D + LRLA+
Sbjct: 823 MVKIQAIKMMVRWLLGMKNNHSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAA 882
Query: 302 AKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA-- 357
A+++L+++ + I ++ + L Q +++F K+H+ + L +Y
Sbjct: 883 GSAIVKLAQEPCYHEIITLEQYQLCALAINDECYQVRQVFAQKLHKGLSRLRLPLEYMAI 942
Query: 358 CAFLFGITESKSPEFEEE---KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYL 414
CA +K P E +Q L I + + + +V S PEY++PY
Sbjct: 943 CALC-----AKDPVKERRAHARQCLVKNITVRREYLKQHAAVSEKLLSL--LPEYVVPYT 995
Query: 415 VHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFR 474
+H AH PD + +D++ + V L+F++ +L+ K+E+ S + I +
Sbjct: 996 IHLLAHD--PDYVKVQDIEQLKDVKECLWFVLEILMAKNEN--------NSHAFIRKMVE 1045
Query: 475 SIKCSEDIV---DAAKSKNSHAICDLGLSI 501
+IK ++D D ++ + +CD+ ++I
Sbjct: 1046 NIKQTKDAQGPDDTKMNEKLYTVCDVAMNI 1075
>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio
GN=pds5a PE=2 SV=1
Length = 1320
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 113/480 (23%), Positives = 215/480 (44%), Gaps = 32/480 (6%)
Query: 72 MQSCMDILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA 129
+++ +++L +L+ P E E L+ LK E++ + E + + G I +L
Sbjct: 651 IRAGLELLKVLSFTHPTAFHSAETYESLLQCLKMEDDKVAEAAIQIFRNTGQKIETELPQ 710
Query: 130 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLP 187
S++ +L + G+ QAK AVH + AI + ++ L+ +++ L L L
Sbjct: 711 IRSTLIPILHQKAKRGTPHQAKQAVHCIHAIFHNKEVQ-LAQIFEPLSRSLNADVPEQLI 769
Query: 188 AVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELCLL 243
L SLG I+ A F + +S + FI +L + N W D+ S L
Sbjct: 770 TPLVSLGHISMLAPDQFASPMKSIVANFIVKDLLMNDRSVGNKNGRLWTADDEVSPEVLA 829
Query: 244 KIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAK 303
K+ IK LV+ L +K+ + L ++S G+++E + S D + LRLA+
Sbjct: 830 KVQAIKLLVRWLLGMKNNQSKSANSTLRLPSAMLVSEGDLTEQKKISKSDMSRLRLAAGS 889
Query: 304 AVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFL 361
A+L+L+++ + I + F L Q ++++ K+H + LL +Y F
Sbjct: 890 AILKLAQEPCYHDIITPEQFQLCGLVINDECYQVRQIYAQKLHVALVKLLLPLEYMAVFA 949
Query: 362 FGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHH 421
+ +Q L I + + + + + + PEY++PY++H AH
Sbjct: 950 LCAKDPVKERRAHARQCLLKNISVRREYIKQ--NPMAHEKLLSLLPEYVVPYMIHLLAHD 1007
Query: 422 SCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSED 481
PD+ + +D++ V L+F++ +L+ K+E+ S S + + +IK ++D
Sbjct: 1008 --PDLTKPQDLEQLRDVKECLWFMLEVLMTKNEN--------NSHSFLRKMVENIKQTKD 1057
Query: 482 IV---DAAKSKNSHAICDLGLSI--TKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDD 536
D ++ + +CD+ L + K S D+ + LPS Y P +K+ +D
Sbjct: 1058 AQCPDDPKANEKLYIVCDVALFVIANKSTSCHLDSPKDPV----LPSKFYTPPDKEFVND 1113
>sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens
GN=PDS5A PE=1 SV=1
Length = 1337
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 105/445 (23%), Positives = 199/445 (44%), Gaps = 30/445 (6%)
Query: 72 MQSCMDILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA 129
++S +++L +L+ P E E L+ L+ E++ + E + + G I L
Sbjct: 656 IRSGLELLKVLSFTHPTSFHSAETYESLLQCLRMEDDKVAEAAIQIFRNTGHKIETDLPQ 715
Query: 130 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLP 187
S++ +L + G+ QAK AVH + AI + ++ L+ +++ L L L
Sbjct: 716 IRSTLIPILHQKAKRGTPHQAKQAVHCIHAIFTNKEVQ-LAQIFEPLSRSLNADVPEQLI 774
Query: 188 AVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKIRNDTKACWDDRSEL---CLL 243
L SLG I+ A F + +S + FI +L W E+ L
Sbjct: 775 TPLVSLGHISMLAPDQFASPMKSVVANFIVKDLLMNDRSTGEKNGKLWSPDEEVSPEVLA 834
Query: 244 KIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRLASA 302
K+ IK LV+ L +K+ + + L +L +ML S G+++E S D + LRLA+
Sbjct: 835 KVQAIKLLVRWLLGMKNNQSKSA-NSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAG 893
Query: 303 KAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAF 360
A+++L+++ + I + F L Q +++F K+H+ + LL +Y F
Sbjct: 894 SAIMKLAQEPCYHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALVKLLLPLEYMAIF 953
Query: 361 LFGITESKSPEFEEEKQNLADIIQMHHQ-MKARQISVQSDANSFATYPEYIIPYLVHTFA 419
+ +Q L I + + +K ++ + + PEY++PY++H A
Sbjct: 954 ALCAKDPVKERRAHARQCLLKNISIRREYIKQNPMATEK---LLSLLPEYVVPYMIHLLA 1010
Query: 420 HHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCS 479
H PD +DV + L+F++ +L+ K+E+ S + + + +IK +
Sbjct: 1011 HD--PDFTRSQDVDQLRDIKECLWFMLEVLMTKNEN--------NSHAFMKKMAENIKLT 1060
Query: 480 EDIVDAAKSKNS---HAICDLGLSI 501
D +SK + + +CD+ L +
Sbjct: 1061 RDAQSPDESKTNEKLYTVCDVALCV 1085
>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus
GN=Pds5a PE=2 SV=1
Length = 1333
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 104/445 (23%), Positives = 199/445 (44%), Gaps = 30/445 (6%)
Query: 72 MQSCMDILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA 129
++S +++L +L+ P E E L+ L+ E++ + E + + G I L
Sbjct: 655 IRSGLELLKVLSFTHPTSFHSAETYESLLQCLRMEDDKVAEAAIQIFRNTGHKIETDLPQ 714
Query: 130 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLP 187
S++ +L + G+ QAK AVH + AI + ++ L+ +++ L L L
Sbjct: 715 IRSTLIPILHQKAKRGTPHQAKQAVHCIHAIFSNKEVQ-LAQIFEPLSRSLNADVPEQLI 773
Query: 188 AVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKIRNDTKACWDDRSEL---CLL 243
L SLG I+ A F + +S + FI +L W E+ L
Sbjct: 774 TPLVSLGHISMLAPDQFASPMKSVVANFIVKDLLMNDRSTGEKNGKLWSPDEEVSPEVLA 833
Query: 244 KIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRLASA 302
K+ IK LV+ L +K+ + + L +L +ML S G+++E S D + LRLA+
Sbjct: 834 KVQAIKLLVRWLLGMKNNQSKSA-NSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAG 892
Query: 303 KAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAF 360
A+++L+++ + I + F L Q +++F K+H+ + LL +Y F
Sbjct: 893 SAIMKLAQEPCYHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALVKLLLPLEYMAIF 952
Query: 361 LFGITESKSPEFEEEKQNLADIIQMHHQ-MKARQISVQSDANSFATYPEYIIPYLVHTFA 419
+ +Q L I + + +K ++ + + PEY++PY++H A
Sbjct: 953 ALCAKDPVKERRAHARQCLLKNISIRREYIKQNPMATE---KLLSLLPEYVVPYMIHLLA 1009
Query: 420 HHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCS 479
H PD +DV + L+F++ +L+ K+E+ S + + + +IK +
Sbjct: 1010 HD--PDFTRSQDVDQLRDIKECLWFMLEVLMTKNEN--------NSHAFMKKMAENIKLT 1059
Query: 480 EDIVDAAKSKNS---HAICDLGLSI 501
D ++K + + +CD+ L +
Sbjct: 1060 RDAQSPDEAKTNEKLYTVCDVALCV 1084
>sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus
GN=PDS5A PE=2 SV=2
Length = 1330
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 105/446 (23%), Positives = 201/446 (45%), Gaps = 32/446 (7%)
Query: 72 MQSCMDILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA 129
+++ +++L +L+ P E E L+ L+ E++ + E + + G I L
Sbjct: 650 IRAGLELLKVLSFTHPTSFHSAETYESLLQCLRMEDDKVAEAAIQIFRNTGHKIETDLPQ 709
Query: 130 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLP 187
S++ +L + G+ QAK AVH + AI + ++ L+ +++ L L L
Sbjct: 710 IRSTLIPILHQKAKRGTPHQAKQAVHCIHAIFSNKEVQ-LAQIFEPLSRSLNADVPEQLI 768
Query: 188 AVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKIRNDTKACWDDRSEL---CLL 243
L SLG I+ A F + +S + F+ +L W E+ L
Sbjct: 769 TPLVSLGHISMLAPDQFASPMKSVVANFVVKDLLMNDRSTGEKNGKLWSPDEEVSPEVLA 828
Query: 244 KIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRLASA 302
K+ IK LV+ L +K+ + + L +L +ML S G+++E S D + LRLA+
Sbjct: 829 KVQAIKLLVRWLLGMKNNQSKSA-NSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAG 887
Query: 303 KAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAF 360
A+++L+++ + I + F L Q +++F K+H+ + LL +Y F
Sbjct: 888 SAIMKLAQEPCYHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALVKLLLPLEYMAIF 947
Query: 361 LFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANS--FATYPEYIIPYLVHTF 418
+K P +E + + + + ++ I AN + PEY++PY++H
Sbjct: 948 ALC---AKDP-VKERRAHARQCLLKNISIRREYIKQNPMANEKLLSLLPEYVVPYMIHLL 1003
Query: 419 AHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKC 478
AH PD + +DV V L+F++ +L+ K+E+ S + + + +IK
Sbjct: 1004 AHD--PDFTKPQDVDQLRDVKECLWFMLEVLMTKNEN--------NSHAFMKKMAENIKL 1053
Query: 479 SEDIVDAAKSKNS---HAICDLGLSI 501
+ D + K + + +CD+ L +
Sbjct: 1054 TRDAQSPDEPKANEKLYTVCDVALCV 1079
>sp|Q4QXM3|PD5AA_XENLA Sister chromatid cohesion protein PDS5 homolog A-A OS=Xenopus laevis
GN=pds5a-a PE=1 SV=1
Length = 1323
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 110/449 (24%), Positives = 205/449 (45%), Gaps = 36/449 (8%)
Query: 72 MQSCMDILGILARFSPLLLGG--TEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA 129
+++ +++L +L+ P T E L+ L+ E++ + E + + G I L
Sbjct: 648 IRAGLELLKVLSFTHPTSFHSDETYESLLQCLRMEDDKVAEAAIQIFRNTGHRIETDLPQ 707
Query: 130 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLP 187
S++ +L + G+ QAK AVH + +I + ++ L+ +++ L L L
Sbjct: 708 IRSALIPILHQKAKRGTPHQAKQAVHCIHSIFSNKEVQ-LAQIFEPLSRSLNADVPEQLV 766
Query: 188 AVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRC--SNKIRNDTKACWDDR-SELCLL 243
L SLG I+ A F + +S + FI +L SN +N C D+ S L
Sbjct: 767 TPLVSLGHISMLAPDQFASPMKSVVANFIVKDLLMNDRSNGDKNGKLWCPDEEVSPEVLA 826
Query: 244 KIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRLASA 302
K IK LV+ L +K+ + + L +L +ML S G+++E S D + LRLA+
Sbjct: 827 KGQAIKLLVRWLLGMKNNQSKSA-NSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAG 885
Query: 303 KAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAF 360
A+++L+++ + I + F L Q +++F K+H+ + L +Y F
Sbjct: 886 AAIMKLAQEPCYHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALVKLQLPLEYMAIF 945
Query: 361 LFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAH 420
+ +Q L I + + +Q V S+ + PEY++PY++H AH
Sbjct: 946 ALCAKDPVKERRAHARQCLLKNISIRREY-IKQNPV-SNEKLLSLLPEYVVPYMIHLLAH 1003
Query: 421 ---HSCP-DIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSI 476
+ P DID+ +D+K C L+F++ +L+ K+E+ S + + + +I
Sbjct: 1004 DPDFTKPQDIDQLRDIKE-----C-LWFMLEVLMTKNEN--------NSHAFMKKLCENI 1049
Query: 477 KCSEDIV---DAAKSKNSHAICDLGLSIT 502
K + D D ++ +CD+ L +
Sbjct: 1050 KQTRDAQAPDDPKANEKLFTVCDVALCVV 1078
>sp|Q4KLU7|PD5AB_XENLA Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus laevis
GN=pds5a-b PE=1 SV=1
Length = 1323
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 110/449 (24%), Positives = 205/449 (45%), Gaps = 36/449 (8%)
Query: 72 MQSCMDILGILARFSPLLLGG--TEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA 129
+++ +++L +L+ P T E L+ L+ E++ + E + + G I L
Sbjct: 648 IRAGLELLKVLSFTHPTSFHSDETYESLLQCLRMEDDKVAEAAIQIFRNTGHRIETDLPQ 707
Query: 130 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLP 187
S++ +L + G+ QAK AVH + +I + ++ L+ +++ L L L
Sbjct: 708 IRSALIPILHQKAKRGTPHQAKQAVHCIHSIFSNKEVQ-LAQIFEPLSRSLNADVPEQLV 766
Query: 188 AVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRC--SNKIRNDTKACWDDR-SELCLL 243
L SLG I+ A F + +S + FI +L SN +N C D+ S L
Sbjct: 767 TPLVSLGHISMLAPDQFASPMKSVVANFIVKDLLMNDRSNGDKNGKLWCPDEEVSPEVLA 826
Query: 244 KIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRLASA 302
K IK LV+ L +K+ + + L +L +ML S G+++E S D + LRLA+
Sbjct: 827 KGQAIKLLVRWLLGMKNNQSKSA-NSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAG 885
Query: 303 KAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAF 360
A+++L+++ + I + F L Q +++F K+H+ + L +Y F
Sbjct: 886 AAIMKLAQEPCYHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALVKLQLPLEYMAIF 945
Query: 361 LFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAH 420
+ +Q L I + + +Q V S+ + PEY++PY++H AH
Sbjct: 946 ALCAKDPVKERRAHARQCLLKNISIRREY-IKQNPV-SNEKLLSLLPEYVVPYMIHLLAH 1003
Query: 421 ---HSCP-DIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSI 476
+ P DID+ +D+K C L+F++ +L+ K+E+ S + + + +I
Sbjct: 1004 DPDFTKPQDIDQLRDIKE-----C-LWFMLEVLMTKNEN--------NSHAFMKKLCENI 1049
Query: 477 KCSEDIV---DAAKSKNSHAICDLGLSIT 502
K + D D ++ +CD+ L +
Sbjct: 1050 KQTRDAQAPDDPKANEKLFTVCDVALCVV 1078
>sp|Q6A026|PDS5A_MOUSE Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus
GN=Pds5a PE=3 SV=3
Length = 1332
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 104/445 (23%), Positives = 200/445 (44%), Gaps = 30/445 (6%)
Query: 72 MQSCMDILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA 129
++S +++L +L+ P E E L+ L+ E++ + E + + G I L
Sbjct: 655 IRSGLELLKVLSFTHPTSFHSAETYESLLQCLRMEDDKVAEAAIQIFRNTGHKIETDLPQ 714
Query: 130 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLP 187
S++ +L + G+ QAK AVH + AI + ++ L+ +++ L L L
Sbjct: 715 IRSTLIPILHQKAKRGTPHQAKQAVHCIHAIFSNKEVQ-LAQIFEPLSRSLNADVPEQLI 773
Query: 188 AVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKIRNDTKACWDDRSEL---CLL 243
L SLG I+ A F + +S + FI +L W E+ L
Sbjct: 774 TPLVSLGHISMLAPDQFASPMKSVVANFIVKDLLMNDRSTGEKNGKLWSPDEEVSPEVLA 833
Query: 244 KIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRLASA 302
K+Y ++ LV+ L +K+ + + L +L +ML S G+++E S D + LRLA+
Sbjct: 834 KVYLLRLLVRWLLGMKNNQSKSA-NSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAG 892
Query: 303 KAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAF 360
A+++L+++ + I + F L Q +++F K+H+ + LL +Y F
Sbjct: 893 SAIMKLAQEPCYHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALVKLLLPLEYMAIF 952
Query: 361 LFGITESKSPEFEEEKQNLADIIQMHHQ-MKARQISVQSDANSFATYPEYIIPYLVHTFA 419
+ +Q L I + + +K ++ + + PEY++PY++H A
Sbjct: 953 ALCAKDPVKERRAHARQCLLKNISIRREYIKQNPMATE---KLLSLLPEYVVPYMIHLLA 1009
Query: 420 HHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCS 479
H PD +DV + L+F++ +L+ K+E+ S + + + +IK +
Sbjct: 1010 HD--PDFTRSQDVDQLRDIKECLWFMLEVLMTKNEN--------NSHAFMKKMAENIKLT 1059
Query: 480 EDIVDAAKSKNS---HAICDLGLSI 501
D +SK + + +CD+ L +
Sbjct: 1060 RDAQSPDESKTNEKLYTVCDVALCV 1084
>sp|Q9HFF5|PDS5_SCHPO Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pds5 PE=1 SV=1
Length = 1205
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 123/531 (23%), Positives = 230/531 (43%), Gaps = 85/531 (16%)
Query: 31 RLYDFLSTLSMKC--------SYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGIL 82
R+ + LST S++C + FNK +V EI+ + N F++ +L L
Sbjct: 600 RVSETLSTASLECFRIFVYRSALFAFNKSNVHEIIQLLNEPVKYHN--FLKPSEALLQHL 657
Query: 83 ARFSPLLLGGTEEELVNLLKEENEIIKEGILH----VLAKAGGTIREQLAATSSSVDLLL 138
P + G E+ EN I+ GI + A + + R++ + ++ +L
Sbjct: 658 PLIHPNIYGEVVIEV------ENIIVSSGIESDPKVIKALSQFSKRKKNFSIQTTTAEIL 711
Query: 139 ERLCLEGSRRQAKYAVHALAAI-TKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIA 197
+LCL G++ QAK A +A TK+ L ++ +V+ LE LP L +LG +
Sbjct: 712 RKLCLHGTQEQAKQAATIIAITETKEFKLDMIT----NIVENLEYNGGLPVRLMTLGQLF 767
Query: 198 QTAMPVFETRESEIEEFIKSKIL-RCSNKI---RNDTKAC-WDDRSELCLLKIYGIKTLV 252
+ E ++ EF+ K++ R K ND + C ++ L + K+ I+ LV
Sbjct: 768 LYTLEEVEKVADQVTEFLVKKVIQRFPEKYDDTHNDEEWCTYEKLDNLTMCKVLAIRVLV 827
Query: 253 KSYLP----VKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRL 308
+ +I I LL +L +++ GE+S + + +A+LRL ++K L+L
Sbjct: 828 NRLRAAAGGTEALNIGAPIIKLLKVL--LMADGELSPFKNTPKISRAYLRLTASKYFLKL 885
Query: 309 SRQWDHKIPVDVFHLTLRT-PEISFP------QAKKLFLSKVHQYVKDRLLD-AKYACAF 360
IP H+ + +IS + LFL+K+ + ++ + L + Y F
Sbjct: 886 C-----SIPFYAEHIDFSSYVQISLLCQDENFDVRNLFLTKLQKQLQLKKLPISYYPLLF 940
Query: 361 LFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAH 420
L + PE EE K + I+ Q++ + F EY+ YL+H +H
Sbjct: 941 LTAV----DPE-EEIKTKASIWIR-------SQVAFFQKTHDFTM--EYVATYLIHLLSH 986
Query: 421 HSCPDIDECKDVKAFELV-YCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCS 479
H PDI + + + + Y R Y N E++ ++ + + IK S
Sbjct: 987 H--PDISSIESENSLDFIAYIRFYV-------------DTVVNSENVPIVFHLMQRIKQS 1031
Query: 480 EDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYE 530
D+++ + + + D+ +++ +++ + G +S + P + PYE
Sbjct: 1032 YDVIEDGNNY-IYVLSDMA----QKILQVKSQNFG-WSLTTYPKQIKLPYE 1076
>sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6
PE=1 SV=2
Length = 1324
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 41/55 (74%)
Query: 824 EDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELL 878
++++G +++V+WP+DK++Y+G++ YD + KHV+ Y+D + E L L KE+ E +
Sbjct: 122 DEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWV 176
>sp|Q9ZUM0|C3H17_ARATH Zinc finger CCCH domain-containing protein 17 OS=Arabidopsis thaliana
GN=At2g02160 PE=1 SV=1
Length = 669
Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 898 LIQVSSGKKNKLSGGARQNKKSMKDKGKRTPKKSL---KDRPKFASKSYFSEDEDSEKTD 954
L + SG + + G ++ M+D+ K PK S K P + F ED S K
Sbjct: 460 LEENHSGNQERGFGAPWARRREMEDERKSAPKSSREESKPEPSLGKRKSFEEDHHSHKRS 519
Query: 955 V-SDPKPTTVSKVLETN-SGDSQGKRADMEDENLTDKEESDKEFKLISEER 1003
S P S++L+ + S G R + +DE ++ KEE+ E KLI+EE+
Sbjct: 520 RDSFAAPLPFSEILKRKKAAASGGSRNNNKDETIS-KEEAGDEIKLITEEK 569
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,115,311
Number of Sequences: 539616
Number of extensions: 18725560
Number of successful extensions: 128667
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 2745
Number of HSP's that attempted gapping in prelim test: 75479
Number of HSP's gapped (non-prelim): 23698
length of query: 1125
length of database: 191,569,459
effective HSP length: 128
effective length of query: 997
effective length of database: 122,498,611
effective search space: 122131115167
effective search space used: 122131115167
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)