Query 001196
Match_columns 1125
No_of_seqs 255 out of 389
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 18:25:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525 Sister chromatid cohes 100.0 7.3E-42 1.6E-46 428.3 32.5 515 17-549 571-1117(1266)
2 KOG1525 Sister chromatid cohes 99.1 1.1E-09 2.5E-14 140.3 17.4 480 89-699 585-1087(1266)
3 PF09465 LBR_tudor: Lamin-B re 99.0 9.9E-10 2.1E-14 93.3 6.6 44 826-869 7-50 (55)
4 KOG1824 TATA-binding protein-i 97.3 0.13 2.9E-06 65.1 29.2 292 49-358 79-412 (1233)
5 smart00333 TUDOR Tudor domain. 97.2 0.00069 1.5E-08 57.8 6.1 44 826-871 4-48 (57)
6 KOG2171 Karyopherin (importin) 97.1 0.13 2.9E-06 66.3 27.0 314 6-343 68-413 (1075)
7 PTZ00429 beta-adaptin; Provisi 97.1 0.032 6.8E-07 70.8 21.7 177 17-203 256-438 (746)
8 cd04508 TUDOR Tudor domains ar 97.0 0.0014 3E-08 54.0 5.9 43 828-871 1-44 (48)
9 smart00743 Agenet Tudor-like d 97.0 0.0012 2.7E-08 57.3 5.7 36 826-862 4-39 (61)
10 PF01602 Adaptin_N: Adaptin N 96.6 0.07 1.5E-06 64.1 18.5 289 16-350 3-298 (526)
11 KOG2171 Karyopherin (importin) 96.5 0.065 1.4E-06 69.1 17.7 251 36-300 329-593 (1075)
12 PF01602 Adaptin_N: Adaptin N 95.7 1.7 3.7E-05 52.3 23.8 259 48-348 72-333 (526)
13 KOG4675 Uncharacterized conser 95.7 0.008 1.7E-07 66.8 3.6 64 817-880 151-222 (273)
14 COG5240 SEC21 Vesicle coat com 95.5 0.69 1.5E-05 56.3 18.5 221 71-338 319-545 (898)
15 PF05804 KAP: Kinesin-associat 95.4 0.72 1.6E-05 58.5 19.2 201 70-281 264-482 (708)
16 PF09038 53-BP1_Tudor: Tumour 95.1 0.041 8.9E-07 54.7 5.9 45 823-868 1-45 (122)
17 PTZ00429 beta-adaptin; Provisi 94.8 12 0.00025 48.4 27.5 179 18-203 106-287 (746)
18 KOG2259 Uncharacterized conser 94.6 8.2 0.00018 48.3 24.2 225 131-375 196-466 (823)
19 KOG1060 Vesicle coat complex A 94.4 16 0.00034 46.8 26.4 203 20-256 38-246 (968)
20 KOG1059 Vesicle coat complex A 93.6 28 0.00061 44.3 29.7 195 13-215 140-345 (877)
21 PF05918 API5: Apoptosis inhib 93.4 27 0.00059 43.6 28.7 351 91-507 19-399 (556)
22 PF10508 Proteasom_PSMB: Prote 93.3 26 0.00057 43.1 27.5 149 70-219 92-252 (503)
23 PF06003 SMN: Survival motor n 92.4 0.26 5.6E-06 55.6 6.5 49 824-872 68-117 (264)
24 PLN03200 cellulose synthase-in 91.6 3.9 8.5E-05 57.3 17.3 148 46-202 441-597 (2102)
25 KOG1078 Vesicle coat complex C 90.2 33 0.00072 44.0 21.7 249 67-339 257-523 (865)
26 PF12717 Cnd1: non-SMC mitotic 89.2 4.1 8.8E-05 43.0 11.6 154 296-480 3-159 (178)
27 KOG0414 Chromosome condensatio 86.6 1.3E+02 0.0029 40.5 25.2 187 32-222 639-863 (1251)
28 PF12719 Cnd3: Nuclear condens 86.2 46 0.001 38.0 18.6 154 241-421 41-208 (298)
29 KOG1241 Karyopherin (importin) 86.1 63 0.0014 41.5 20.5 153 134-312 90-248 (859)
30 KOG2032 Uncharacterized conser 85.1 71 0.0015 39.3 19.6 237 76-344 143-412 (533)
31 KOG4224 Armadillo repeat prote 84.9 22 0.00047 42.1 14.8 212 92-338 208-436 (550)
32 PLN03200 cellulose synthase-in 84.8 4.6 0.0001 56.6 11.1 150 47-199 647-812 (2102)
33 PF05004 IFRD: Interferon-rela 84.7 30 0.00064 40.1 16.2 106 96-202 47-164 (309)
34 PF12717 Cnd1: non-SMC mitotic 84.6 20 0.00044 37.8 13.7 87 73-163 6-93 (178)
35 KOG1060 Vesicle coat complex A 84.5 25 0.00055 45.0 16.1 120 73-201 339-461 (968)
36 KOG1242 Protein containing ada 84.4 71 0.0015 40.0 19.8 116 95-216 177-301 (569)
37 KOG1020 Sister chromatid cohes 84.0 2E+02 0.0042 40.0 27.5 239 42-309 1011-1296(1692)
38 PRK09687 putative lyase; Provi 83.9 85 0.0019 35.8 21.2 190 94-344 25-217 (280)
39 cd00020 ARM Armadillo/beta-cat 83.8 6.1 0.00013 37.0 8.6 105 52-160 8-118 (120)
40 PF10508 Proteasom_PSMB: Prote 82.9 1.3E+02 0.0028 37.2 27.7 169 70-257 53-232 (503)
41 KOG1824 TATA-binding protein-i 82.1 79 0.0017 41.7 19.1 245 51-323 431-693 (1233)
42 PF12348 CLASP_N: CLASP N term 81.9 13 0.00028 40.1 11.3 137 62-203 60-211 (228)
43 PF12348 CLASP_N: CLASP N term 81.7 8.4 0.00018 41.5 9.7 128 72-201 24-163 (228)
44 cd00020 ARM Armadillo/beta-cat 79.8 5.8 0.00013 37.2 6.9 72 93-164 8-80 (120)
45 PF05918 API5: Apoptosis inhib 79.6 20 0.00044 44.7 13.0 104 70-177 37-140 (556)
46 KOG0413 Uncharacterized conser 79.0 14 0.00029 48.1 11.2 213 131-371 823-1060(1529)
47 KOG2259 Uncharacterized conser 78.2 25 0.00055 44.3 12.9 141 72-222 390-532 (823)
48 PF08167 RIX1: rRNA processing 77.5 24 0.00052 37.0 11.2 139 49-218 19-163 (165)
49 PF01347 Vitellogenin_N: Lipop 77.0 65 0.0014 40.2 16.7 93 187-312 453-555 (618)
50 smart00638 LPD_N Lipoprotein N 75.9 2.1E+02 0.0045 35.6 20.6 161 137-336 361-533 (574)
51 PF05641 Agenet: Agenet domain 75.6 5.3 0.00011 35.9 4.9 35 827-862 3-40 (68)
52 PF04826 Arm_2: Armadillo-like 74.6 42 0.00092 37.9 12.8 106 93-199 13-122 (254)
53 KOG1077 Vesicle coat complex A 74.3 2.7E+02 0.0059 36.0 21.5 275 71-383 93-374 (938)
54 cd03568 VHS_STAM VHS domain fa 73.3 14 0.00031 38.2 8.0 73 48-124 34-113 (144)
55 KOG1248 Uncharacterized conser 73.1 2.8E+02 0.006 37.7 20.8 300 7-342 593-930 (1176)
56 KOG1240 Protein kinase contain 71.3 1.1E+02 0.0024 41.3 16.6 98 185-310 436-537 (1431)
57 KOG0168 Putative ubiquitin fus 70.9 72 0.0016 41.5 14.5 181 42-225 245-440 (1051)
58 PF00567 TUDOR: Tudor domain; 69.4 12 0.00025 35.4 6.1 53 823-878 50-103 (121)
59 PF05804 KAP: Kinesin-associat 69.0 2.7E+02 0.0058 36.2 19.4 139 21-163 294-442 (708)
60 PF15057 DUF4537: Domain of un 67.9 12 0.00025 37.8 5.9 42 828-870 1-42 (124)
61 PF12530 DUF3730: Protein of u 67.7 2E+02 0.0044 31.9 16.4 167 32-204 18-191 (234)
62 COG5096 Vesicle coat complex, 67.5 23 0.0005 45.6 9.6 158 32-202 36-196 (757)
63 PF13646 HEAT_2: HEAT repeats; 65.3 49 0.0011 29.8 9.0 74 94-184 1-75 (88)
64 PF11717 Tudor-knot: RNA bindi 64.5 19 0.00042 31.1 5.8 37 827-864 3-41 (55)
65 cd03569 VHS_Hrs_Vps27p VHS dom 64.2 28 0.0006 35.9 7.9 91 49-145 39-136 (142)
66 COG5215 KAP95 Karyopherin (imp 64.0 3.2E+02 0.007 34.6 17.5 146 71-216 572-729 (858)
67 PF12755 Vac14_Fab1_bd: Vacuol 63.8 12 0.00027 36.1 5.0 46 293-338 39-87 (97)
68 KOG2956 CLIP-associating prote 62.0 87 0.0019 38.4 12.3 150 3-162 319-477 (516)
69 PF13646 HEAT_2: HEAT repeats; 59.5 41 0.00089 30.3 7.4 86 53-157 1-87 (88)
70 KOG0166 Karyopherin (importin) 58.2 1.1E+02 0.0023 38.2 12.5 226 51-310 109-351 (514)
71 KOG0644 Uncharacterized conser 58.0 11 0.00025 48.1 4.5 47 824-870 978-1036(1113)
72 PF12460 MMS19_C: RNAPII trans 58.0 3.3E+02 0.0072 32.7 16.7 169 70-257 205-395 (415)
73 KOG2023 Nuclear transport rece 56.2 5.7E+02 0.012 33.2 20.4 159 46-206 384-554 (885)
74 cd03567 VHS_GGA VHS domain fam 55.8 48 0.001 34.2 7.9 71 50-124 37-119 (139)
75 cd03565 VHS_Tom1 VHS domain fa 55.6 51 0.0011 34.0 8.1 74 48-124 35-118 (141)
76 cd03561 VHS VHS domain family; 52.5 35 0.00075 34.5 6.2 71 50-124 36-115 (133)
77 PF05536 Neurochondrin: Neuroc 51.0 6.1E+02 0.013 32.0 25.0 101 55-158 53-164 (543)
78 PF00790 VHS: VHS domain; Int 48.5 62 0.0013 33.0 7.4 70 50-123 41-120 (140)
79 smart00288 VHS Domain present 48.0 79 0.0017 32.1 8.0 72 49-124 35-114 (133)
80 KOG1059 Vesicle coat complex A 47.8 7.8E+02 0.017 32.3 18.3 40 404-452 386-425 (877)
81 KOG1061 Vesicle coat complex A 46.5 3.9E+02 0.0085 34.8 15.0 163 35-202 101-272 (734)
82 PRK13800 putative oxidoreducta 46.4 8.7E+02 0.019 32.4 25.6 44 295-345 821-864 (897)
83 KOG2038 CAATT-binding transcri 45.2 8.7E+02 0.019 32.1 21.2 84 132-216 303-388 (988)
84 KOG1078 Vesicle coat complex C 44.9 1.3E+02 0.0028 39.1 10.5 53 70-122 297-349 (865)
85 KOG1062 Vesicle coat complex A 44.8 8.8E+02 0.019 32.1 24.4 108 101-215 116-225 (866)
86 PRK09687 putative lyase; Provi 43.1 1.8E+02 0.0038 33.3 10.7 164 12-196 18-186 (280)
87 KOG3026 Splicing factor SPF30 43.0 26 0.00056 39.1 3.8 37 825-861 91-127 (262)
88 PF12755 Vac14_Fab1_bd: Vacuol 42.5 1.1E+02 0.0023 29.7 7.6 85 76-161 7-95 (97)
89 PF14500 MMS19_N: Dos2-interac 40.8 6E+02 0.013 29.0 16.2 92 12-103 37-134 (262)
90 PF08605 Rad9_Rad53_bind: Fung 40.4 53 0.0012 33.8 5.4 49 838-889 21-69 (131)
91 KOG3723 PH domain protein Melt 39.3 1.5E+02 0.0033 37.2 9.6 125 80-209 143-274 (851)
92 COG5240 SEC21 Vesicle coat com 38.8 9.6E+02 0.021 30.8 19.8 136 75-221 284-423 (898)
93 KOG1241 Karyopherin (importin) 38.4 1.7E+02 0.0038 37.9 10.2 153 67-219 513-689 (859)
94 PF14631 FancD2: Fanconi anaem 37.2 7.7E+02 0.017 34.8 16.9 188 20-219 363-563 (1426)
95 KOG1832 HIV-1 Vpr-binding prot 34.9 22 0.00048 45.9 2.0 47 71-117 328-378 (1516)
96 KOG2051 Nonsense-mediated mRNA 34.8 1.4E+03 0.03 31.4 18.9 62 244-312 727-791 (1128)
97 KOG1061 Vesicle coat complex A 34.6 1.3E+02 0.0029 38.7 8.5 161 53-222 47-210 (734)
98 PF14664 RICTOR_N: Rapamycin-i 34.5 3.1E+02 0.0068 32.8 11.3 130 34-165 39-179 (371)
99 PF00790 VHS: VHS domain; Int 34.4 5.1E+02 0.011 26.3 11.9 71 74-147 25-99 (140)
100 PF02237 BPL_C: Biotin protein 32.7 1.2E+02 0.0026 25.5 5.5 39 827-868 2-40 (48)
101 smart00638 LPD_N Lipoprotein N 32.0 1.1E+03 0.024 29.4 21.0 44 294-343 529-573 (574)
102 PF11791 Aconitase_B_N: Aconit 31.7 3.5E+02 0.0075 28.8 9.6 93 20-119 25-121 (154)
103 KOG2023 Nuclear transport rece 31.6 3.5E+02 0.0076 34.9 11.1 124 94-217 130-263 (885)
104 PRK13800 putative oxidoreducta 31.1 1.4E+03 0.031 30.5 22.5 262 19-343 623-894 (897)
105 PF12719 Cnd3: Nuclear condens 31.1 8.5E+02 0.018 27.8 17.2 173 33-205 4-188 (298)
106 KOG2274 Predicted importin 9 [ 29.5 1.5E+03 0.034 30.4 22.6 195 243-481 507-718 (1005)
107 PRK07764 DNA polymerase III su 28.5 1.5E+03 0.033 30.2 16.8 45 16-60 134-191 (824)
108 KOG2393 Transcription initiati 28.3 1.4E+02 0.003 37.2 7.0 22 1020-1042 293-314 (555)
109 PF08506 Cse1: Cse1; InterPro 28.2 1.1E+03 0.024 28.3 17.3 277 29-336 26-363 (370)
110 PLN03076 ARF guanine nucleotid 27.3 1.9E+03 0.042 31.9 18.3 318 89-447 875-1303(1780)
111 KOG3723 PH domain protein Melt 27.3 6.8E+02 0.015 31.8 12.3 72 45-121 194-266 (851)
112 KOG1832 HIV-1 Vpr-binding prot 27.3 36 0.00079 44.1 2.1 25 134-158 422-449 (1516)
113 PF14664 RICTOR_N: Rapamycin-i 26.9 1.2E+03 0.025 28.1 14.6 84 32-119 88-174 (371)
114 PF03378 CAS_CSE1: CAS/CSE pro 26.4 1.3E+03 0.028 28.4 16.3 233 65-331 40-289 (435)
115 PLN00104 MYST -like histone ac 26.3 1.3E+02 0.0028 36.9 6.3 36 826-861 55-96 (450)
116 KOG1240 Protein kinase contain 24.9 1.6E+02 0.0035 40.0 7.1 17 404-420 502-518 (1431)
117 KOG1242 Protein containing ada 24.9 6E+02 0.013 32.3 11.6 125 71-195 232-358 (569)
118 PF05004 IFRD: Interferon-rela 24.7 1E+03 0.022 27.8 13.0 73 32-105 64-142 (309)
119 KOG1077 Vesicle coat complex A 23.4 7.1E+02 0.015 32.6 11.8 151 40-199 175-359 (938)
120 KOG2137 Protein kinase [Signal 23.3 2.6E+02 0.0056 36.1 8.2 64 82-147 378-442 (700)
121 KOG0212 Uncharacterized conser 21.3 8E+02 0.017 31.3 11.5 127 71-205 352-487 (675)
122 PF14711 Nitr_red_bet_C: Respi 21.0 2.1E+02 0.0045 27.4 5.3 35 347-387 25-59 (83)
123 PF14631 FancD2: Fanconi anaem 20.9 5.1E+02 0.011 36.6 11.0 72 28-103 446-521 (1426)
124 KOG0220 Mismatch repair ATPase 20.8 5.5E+02 0.012 33.5 10.2 147 110-260 641-821 (867)
125 PRK07003 DNA polymerase III su 20.4 7.1E+02 0.015 33.0 11.4 17 104-120 194-210 (830)
No 1
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.3e-42 Score=428.32 Aligned_cols=515 Identities=19% Similarity=0.269 Sum_probs=407.4
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHhcccccCH-HHHHHHHHHHHhccC-------c--chhhhHHHHHHHHHHHHhhC
Q 001196 17 VLQDDLLKILGAKHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQKS-------S--ANAQFMQSCMDILGILARFS 86 (1125)
Q Consensus 17 ~ar~ELLKRLg~k~~l~etlk~LL~RsS~lifNk-ShV~~LL~~vs~~~s-------~--~~~~~~~~AleLL~~IS~~~ 86 (1125)
.+-.+|.++++.++++..+.+.|+.|..++.+.. +.+..++........ . -..+....+..||..++.++
T Consensus 571 ~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~~~ 650 (1266)
T KOG1525|consen 571 EILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSSIH 650 (1266)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhhcC
Confidence 3445666666667789999999999999988888 777777774332111 0 12355677889999999999
Q ss_pred CcCccccH--HHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCC
Q 001196 87 PLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 164 (1125)
Q Consensus 87 P~LFk~~v--~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~ 164 (1125)
|.+|.... ..++..+....+.+.+.+|+.+-..|+.+....+.....+...+..+++.|+|.|||+|++|+.++...+
T Consensus 651 ~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~~~~s~ 730 (1266)
T KOG1525|consen 651 PDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKAILQSK 730 (1266)
T ss_pred cchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhHHhhhh
Confidence 99998874 6666666666767788999999988855554455677889999999999999999999999999887764
Q ss_pred ccchHHHHHHHHHHhhhcC----C-CCchHHHHHHHHHhhccccccch-hHHHHHHHHHhhhcccCCCCCC-CCCCCCCC
Q 001196 165 GLKSLSVLYKRLVDMLEEK----T-HLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRND-TKACWDDR 237 (1125)
Q Consensus 165 ~~~~ls~L~e~Lv~~Le~~----s-~l~T~L~aLgqIA~~aP~vfe~~-~~eI~~fIiK~LLl~~~~~~~~-~~~eW~~~ 237 (1125)
.. .+.+++..+.+.|... . ++.+++.+||+|+.+.|..|.+. ...+..||+|++++.+..+++. ....|+++
T Consensus 731 ~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~~e~~~~~~~~P~ 809 (1266)
T KOG1525|consen 731 FC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSPGEKNKSKEWLPS 809 (1266)
T ss_pred hh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCccccccCccccCCc
Confidence 31 2344455555554433 3 99999999999999999777765 8899999999999888888765 66889873
Q ss_pred ----cHHHHHHHHHHHHHHHhhcCCccccccc--chHHHHHHHHHhh-hcCCCcCCcCCChhhHhhHHHHHHHHHHhhhc
Q 001196 238 ----SELCLLKIYGIKTLVKSYLPVKDAHIRP--GIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRLASAKAVLRLSR 310 (1125)
Q Consensus 238 ----Se~~~aKI~ALK~LvN~Lla~~~~~~~~--~~~~llkLL~~ll-~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr 310 (1125)
+..+.+|+++++++++||++.+.+.-+. .+...+++|..++ +.|++..+..+|..++++||+.|++++||||.
T Consensus 810 ~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr~~a~~~ilKl~~ 889 (1266)
T KOG1525|consen 810 DKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLRLTAKITILKLAS 889 (1266)
T ss_pred ccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhhhhhhheeeeccc
Confidence 5679999999999999999998643222 1222567888887 79999998889999999999999999999998
Q ss_pred c--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHH
Q 001196 311 Q--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQ 388 (1125)
Q Consensus 311 ~--~d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L~~~~Lp~RF~alffL~A~e~~epe~~~~K~~L~~~I~~~~~ 388 (1125)
. |..+|++++|..++++++|++++||..|+.||++++...+||+-||++|+|++.++.....+............+ +
T Consensus 890 ~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~~~~~~~~~~~t~~~~~~-r 968 (1266)
T KOG1525|consen 890 EKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSKELLANKREEETKNSASR-R 968 (1266)
T ss_pred ccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhhhhhhHHHHhhhhcchhh-h
Confidence 6 699999999999999999999999999999999999999999999999999987653333333333322222111 1
Q ss_pred HHHhhhccccccccccccchhhHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHHHHHHHHhhccCccccccccccchHHH
Q 001196 389 MKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISV 468 (1125)
Q Consensus 389 sr~R~~s~~s~~~~~~~~pEyvLpyLIHLLAHH~~Pdf~~~~d~~al~~~~~yL~FyLe~La~~~e~~~~~~~~~eNiSl 468 (1125)
.+........+. .+.+.|||+.+|.+|+|||| |+|...+|+..|..+..++||.++.|..++++ .-..+
T Consensus 969 ~~t~~e~~~s~~-~~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~~~n--------~~~~~ 1037 (1266)
T KOG1525|consen 969 EQTKFERATSDG-TLAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEENEN--------NQHKF 1037 (1266)
T ss_pred hhhhhhhccCch-hhhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhhhcc--------chhHH
Confidence 222222222121 25688999999999999999 99999999999999999999999999987422 22345
Q ss_pred HHHHHHHhhcccCccccc---CCcchHHHHHHHHHHHHHHh-ccCCCCCccccccCCCccccCCCCCCCCcccccccccc
Q 001196 469 IISIFRSIKCSEDIVDAA---KSKNSHAICDLGLSITKRLS-RMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQT 544 (1125)
Q Consensus 469 Ly~La~rIKq~rDavd~e---~S~nLy~LcDLAq~IIk~~a-qk~W~LqtyPGkV~LPs~LF~p~~s~e~~ea~~v~~K~ 544 (1125)
.-.+.+.+++.+|...+. .+..||+|||+|+.|+.... ..+|+..+|||++.||..+|.+..+ ....+.++
T Consensus 1038 ~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~~~-----kn~~~~k~ 1112 (1266)
T KOG1525|consen 1038 WKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSPKD-----KNFINNKI 1112 (1266)
T ss_pred HHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCcch-----hhhccccc
Confidence 556667788888877443 47899999999999999888 6899999999999999999999864 23678999
Q ss_pred ccCch
Q 001196 545 WLADE 549 (1125)
Q Consensus 545 YLpde 549 (1125)
|||++
T Consensus 1113 ~i~e~ 1117 (1266)
T KOG1525|consen 1113 YIPEE 1117 (1266)
T ss_pred cCCch
Confidence 99999
No 2
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=1.1e-09 Score=140.29 Aligned_cols=480 Identities=17% Similarity=0.137 Sum_probs=254.7
Q ss_pred CccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccch
Q 001196 89 LLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKS 168 (1125)
Q Consensus 89 LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ 168 (1125)
+|...+..|+..|.. ..+.++..++..++.............++..|-++..+..||.+..|..+..+.. .
T Consensus 585 lF~~~~~~li~~I~~-------v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~~~~~~~--~ 655 (1266)
T KOG1525|consen 585 LFSSMEKELIERIAE-------VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSSIHPDLF--K 655 (1266)
T ss_pred hHHHHHHHHHHHhcc-------hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhhcCcchh--h
Confidence 888888888887776 2333333333222222222334445556778888888999999999986665533 2
Q ss_pred HHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHH
Q 001196 169 LSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIY 246 (1125)
Q Consensus 169 ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ 246 (1125)
.+..+..|+..+.... .-+.+|+.+.+++ +.+-......+..++-.......+......+..|..-...++.+.+
T Consensus 656 ~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~---~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~~~~s~~~ 732 (1266)
T KOG1525|consen 656 YSESVLSILEKLFSEPDVVAPVVLKKLESQG---KKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKAILQSKFC 732 (1266)
T ss_pred hhHHHHHHHHHhccchhhhhHHHHHHHHhcc---ccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhHHhhhhhh
Confidence 3445666665544332 6788888888888 3333333323322221111111111111112223222223333322
Q ss_pred HHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHhh
Q 001196 247 GIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLR 326 (1125)
Q Consensus 247 ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~ 326 (1125)
.+.+.+....+............+...++.-|++... .|...+..++..++..|+|.. .++.....+.+....+
T Consensus 733 ---~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~--~p~~~~~~~k~~~~~~IvK~~-~~~~~~~~e~~~~~~~ 806 (1266)
T KOG1525|consen 733 ---KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLD--LPSQFLDPLKSDVAKFIVKKV-LSNDDSPGEKNKSKEW 806 (1266)
T ss_pred ---HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhh--ccHhhcchhhhhhHHHHHHHH-hcCCCccccccCcccc
Confidence 2233333333222111112222333334445677644 357889999999999988887 5544443332200000
Q ss_pred cccCCchhHHHHHHHHHHHhHhcCCCchhHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Q 001196 327 TPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATY 406 (1125)
Q Consensus 327 lvQD~~~eVR~~Fl~KL~k~L~~~~Lp~RF~alffL~A~e~~epe~~~~K~~L~~~I~~~~~sr~R~~s~~s~~~~~~~~ 406 (1125)
+ | .+ . ..+
T Consensus 807 ~---------------------------------------P--~~----------------------------~---~~~ 814 (1266)
T KOG1525|consen 807 L---------------------------------------P--SD----------------------------K---LLS 814 (1266)
T ss_pred C---------------------------------------C--cc----------------------------c---ccc
Confidence 0 0 00 0 135
Q ss_pred chhhHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHHHHHHHHhhccCccccccc-cccchHHHHHHH-------HHHhhc
Q 001196 407 PEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEA-SNKESISVIISI-------FRSIKC 478 (1125)
Q Consensus 407 pEyvLpyLIHLLAHH~~Pdf~~~~d~~al~~~~~yL~FyLe~La~~~e~~~~~~-~~~eNiSlLy~L-------a~rIKq 478 (1125)
|+++++++-+.|.|+.+|+...+.+..++..+. ..-+|..+++..++..... +.+.-.+.+... +..++.
T Consensus 815 p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~--~~~~L~~ll~~~gdl~~~~~~~~~~~sklr~~a~~~ilKl~~~~~ 892 (1266)
T KOG1525|consen 815 PNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPR--SFRLLSKLLNSEGDLTEQNRDPKSDQSKLRLTAKITILKLASEKS 892 (1266)
T ss_pred hhhhhHHHHHHHhhhhccccccCcchhhhcchh--HHHHHHHHHhhcCCCCcccCCcchhhhhhhhhhhheeeecccccc
Confidence 778888888888888777777655555554433 3344555555422211111 000111111111 112333
Q ss_pred ccCcccccCCcchHHHHHHHHHHHH-------HHhccCCCCCccccccCCCccccCCCCCCCCccccccccccccCchhh
Q 001196 479 SEDIVDAAKSKNSHAICDLGLSITK-------RLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLADESV 551 (1125)
Q Consensus 479 ~rDavd~e~S~nLy~LcDLAq~IIk-------~~aqk~W~LqtyPGkV~LPs~LF~p~~s~e~~ea~~v~~K~YLpde~~ 551 (1125)
+... .+-+..+.+++.+.- .++++ ++.+-.++.||-.+...+ +.|.|+...
T Consensus 893 ~~e~------~~~~~~~~~~~~i~de~~~vR~~f~~k---l~k~l~~i~lp~~~~a~~-------------~l~~~d~~~ 950 (1266)
T KOG1525|consen 893 YHEF------INAEQYEKLILLISDECLQVRLVFLLK---LHKGLSRIKLPLEYMAKF-------------KLCAPDVSK 950 (1266)
T ss_pred hhcc------CCHHHHHHHHHHhcCCchhHHHHHHHH---ccccccccccchhhhhHH-------------HHhccchhh
Confidence 3333 344455555554433 33322 222323366666444333 344555423
Q ss_pred HHHhhhhhhcccccccc--hhhhcccccccccCCCcccchhHHHHhhcccccCcccccccCChhhhccCCCchhhhhhhh
Q 001196 552 LTHFESLKLETHEVVGS--EIARHEALDDLEKDGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQMVR 629 (1125)
Q Consensus 552 l~~l~~lk~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 629 (1125)
..+.......+.+.+.. ++....+.+ +|- +.++-++.-++..-..++.++.+.+| ||+.|.+++
T Consensus 951 ~~~~~~~~~~t~~~~~~r~~t~~e~~~s----~~~----~~~~~e~V~~~~~~~la~d~~~~~~e------dv~~l~~~k 1016 (1266)
T KOG1525|consen 951 ELLANKREEETKNSASRREQTKFERATS----DGT----LAHLPEYVGSYVIHLLAHDPDFVKAE------DVDSLSDLK 1016 (1266)
T ss_pred hhhhHHHHhhhhcchhhhhhhhhhhccC----chh----hhhhhHHhhhhhhhhhccCccccccc------hhhhHHHHH
Confidence 33333333444444433 333333332 333 77888888888888889999998888 999999999
Q ss_pred hccccccCCcccccccCCCCCCCcccccchhhHHHHhh---ccCCCccc-ccCCccccccccCCCCCCCCCCCC
Q 001196 630 EINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKK---RKATDVTS-FPVPKRRRSLSAHGGFRTPKSNSK 699 (1125)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~ 699 (1125)
++++.-+..++.++.+|+|.+....+.+ +++...+ +.+++.++ +.|+.+.+.+..+.+..++.+..+
T Consensus 1017 e~~~~vl~~l~~~~~n~~~~~~~~~~~~---~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt 1087 (1266)
T KOG1525|consen 1017 ECLWFVLEDLDEENENNQHKFWKREKEE---IKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTT 1087 (1266)
T ss_pred HhHHHHHhhhhhhhccchhHHHHHHHhh---hhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCC
Confidence 9999999999999999999887555543 2222222 33333333 678888888888877777666554
No 3
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=98.98 E-value=9.9e-10 Score=93.33 Aligned_cols=44 Identities=34% Similarity=0.647 Sum_probs=36.4
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeee
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 869 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~ 869 (1125)
-+|.+|.+|||+++.||+|.|++||+.++.|.|.|+||++..|.
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~lk 50 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTELELK 50 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EEEEE
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEEEec
Confidence 48999999999999999999999999999999999999995443
No 4
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.35 E-value=0.13 Score=65.08 Aligned_cols=292 Identities=17% Similarity=0.165 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHhcc-CcchhhhHHHHHHHHHHHHhhCCcC--------ccccHHHHHHHHhh-ccc-hhHHHHHHHHH
Q 001196 49 NKEHVKEILLEVAAQK-SSANAQFMQSCMDILGILARFSPLL--------LGGTEEELVNLLKE-ENE-IIKEGILHVLA 117 (1125)
Q Consensus 49 NkShV~~LL~~vs~~~-s~~~~~~~~~AleLL~~IS~~~P~L--------Fk~~v~~L~~lL~d-~n~-~vve~aLkaLA 117 (1125)
-..+|.++.+.+...+ ++.....--+++.|+.+|+..-|.. |+.-...|...+.. ++. .+.-++|-+++
T Consensus 79 ke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~ 158 (1233)
T KOG1824|consen 79 KEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILA 158 (1233)
T ss_pred hHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHH
Confidence 4567777777665432 2332333456889999999999832 22223444444433 222 25556677776
Q ss_pred HhccchhhhhcccChhHHHHHHHHhhcCChHHH--HHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC---CCchHHHH
Q 001196 118 KAGGTIREQLAATSSSVDLLLERLCLEGSRRQA--KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT---HLPAVLQS 192 (1125)
Q Consensus 118 k~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqA--KyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s---~l~T~L~a 192 (1125)
-+-.++..-++.....+... -+|.-+++|+| |-|+-+|+-++..-....+..+++.+.+.|.... ...|.+++
T Consensus 159 d~lsr~g~ll~~fh~~il~~--l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 159 DVLSRFGTLLPNFHLSILKC--LLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred HHHHhhcccCcchHHHHHHH--HhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 33222221122222222222 25666889988 9999998755543333345566777777665443 67889999
Q ss_pred HHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHH
Q 001196 193 LGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLG 272 (1125)
Q Consensus 193 LgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llk 272 (1125)
||.|++-+-.-|..|-+.|+-++++- ..... .+++++...=+.|+-.|+.|| .. ..-+....++.
T Consensus 237 l~~i~r~ag~r~~~h~~~ivp~v~~y-~~~~e----------~~dDELrE~~lQale~fl~rc---p~-ei~p~~pei~~ 301 (1233)
T KOG1824|consen 237 LAAICRQAGHRFGSHLDKIVPLVADY-CNKIE----------EDDDELREYCLQALESFLRRC---PK-EILPHVPEIIN 301 (1233)
T ss_pred HHHHHHHhcchhhcccchhhHHHHHH-hcccc----------cCcHHHHHHHHHHHHHHHHhC---hh-hhcccchHHHH
Confidence 99999999999999988888887642 21110 133455555566777777777 22 22344445555
Q ss_pred HHHHhh----h--cCCCcCC--------------cC-CChhhHhh-HHHHHHHHHHhhhcccCCCCCHHHHHHHhh----
Q 001196 273 ILKSML----S--YGEMSED--------------IE-SSSVDKAH-LRLASAKAVLRLSRQWDHKIPVDVFHLTLR---- 326 (1125)
Q Consensus 273 LL~~ll----~--~GEL~~~--------------~~-tp~~~kAr-LRLaAa~sLLKLAr~~d~~Itp~~F~~La~---- 326 (1125)
++..-+ | ++.=..+ .. +-+.+++| .|-+||+||+-+-.-. ..+-|..++.++-
T Consensus 302 l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR-~E~L~~~~q~l~p~lI~ 380 (1233)
T KOG1824|consen 302 LCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR-LEMLPDFYQTLGPALIS 380 (1233)
T ss_pred HHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc-HHHHHHHHHHhCHHHHH
Confidence 555433 2 2210000 00 23456777 7999999998875422 2222344444431
Q ss_pred cccCCchhHHHHHHHHHHHhHhcCCCchhHHH
Q 001196 327 TPEISFPQAKKLFLSKVHQYVKDRLLDAKYAC 358 (1125)
Q Consensus 327 lvQD~~~eVR~~Fl~KL~k~L~~~~Lp~RF~a 358 (1125)
=..+....|+...+.-....|.+-+....+++
T Consensus 381 RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~ 412 (1233)
T KOG1824|consen 381 RFKEREENVKADVFHAYIALLKQTRPVIEVLA 412 (1233)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCCccccc
Confidence 12466677888877777777777777666665
No 5
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.24 E-value=0.00069 Score=57.77 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=39.8
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecC-CCceeeecC
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 871 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdD-GD~E~L~L~ 871 (1125)
-+|..|.+.| .|..||.|+|+.+++. +...|.|.| |..+++...
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~~ 48 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPPS 48 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeHH
Confidence 4899999999 9999999999999988 889999977 999988754
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.13 Score=66.33 Aligned_cols=314 Identities=16% Similarity=0.185 Sum_probs=188.9
Q ss_pred eehhcccchhhHHHHHHHHHhccCC------cHHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHH
Q 001196 6 LWIDFVSIYFPVLQDDLLKILGAKH------RLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDIL 79 (1125)
Q Consensus 6 ~~~~~~s~~~~~ar~ELLKRLg~k~------~l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL 79 (1125)
.|-.+.....+.++..||..+.... .+.+++-.+- -.++.- -=|+||.-+-.+..+.+.+..+.|..+|
T Consensus 68 ~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia----~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il 142 (1075)
T KOG2171|consen 68 HWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIA----RNDLPE-KWPELLQFLFQSTKSPNPSLRESALLIL 142 (1075)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH----Hhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 4777777888888899999887632 2444444433 333433 6778888666665566678899999999
Q ss_pred HHHHhhCCcCccccHHHHHHHHhh----ccchhHHHHHHHHHHhccchh------hhhcccChhHHHHHHHHhhcCChHH
Q 001196 80 GILARFSPLLLGGTEEELVNLLKE----ENEIIKEGILHVLAKAGGTIR------EQLAATSSSVDLLLERLCLEGSRRQ 149 (1125)
Q Consensus 80 ~~IS~~~P~LFk~~v~~L~~lL~d----~n~~vve~aLkaLAk~gk~i~------e~~~~~~s~l~~~L~~lAleGTPrq 149 (1125)
-.+...++.-|.+|...|..+|.. ....+...+++++..+...+. ..+...-.+++..|....-.|.-..
T Consensus 143 ~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~ 222 (1075)
T KOG2171|consen 143 SSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDA 222 (1075)
T ss_pred HhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHH
Confidence 999999999999999888877776 233467777888887754442 2233334456667777778899999
Q ss_pred HHHHHHHHHhhcCCCccchHHHHHHHHHHh-hh---cC---C-CCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhc
Q 001196 150 AKYAVHALAAITKDDGLKSLSVLYKRLVDM-LE---EK---T-HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILR 221 (1125)
Q Consensus 150 AKyAVr~LaAls~d~~~~~ls~L~e~Lv~~-Le---~~---s-~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl 221 (1125)
|+.+..+|.-+..... .+++..+..|+.- |. .+ . -=...|..|..++++||...-.... +..-++=.+|.
T Consensus 223 a~~~l~~l~El~e~~p-k~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~~lv~~~l~ 300 (1075)
T KOG2171|consen 223 AKSALEALIELLESEP-KLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL-LGHTLVPVLLA 300 (1075)
T ss_pred HHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhccHHHHHHH
Confidence 9999999876665433 3444444444431 22 11 1 1133588888888888887765544 33333333332
Q ss_pred ccCCCCCCCCCCCCCC-----cHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhh
Q 001196 222 CSNKIRNDTKACWDDR-----SELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAH 296 (1125)
Q Consensus 222 ~~~~~~~~~~~eW~~~-----Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kAr 296 (1125)
-..+ . .++.+|... ++...-...|..+|-+--+.+..++ .+-+++..|..++.. ..-.
T Consensus 301 ~mte-~-~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---v~p~~~~~l~~~l~S------------~~w~ 363 (1075)
T KOG2171|consen 301 MMTE-E-EDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ---VLPPLFEALEAMLQS------------TEWK 363 (1075)
T ss_pred hcCC-c-ccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh---ehHHHHHHHHHHhcC------------CCHH
Confidence 2222 2 222788631 1112236778888777666666544 333455666655411 1122
Q ss_pred HHHHHHHHHHhhhcc-cC--CCCCHHHHHHHhhcccCCchhHHHHHHHHH
Q 001196 297 LRLASAKAVLRLSRQ-WD--HKIPVDVFHLTLRTPEISFPQAKKLFLSKV 343 (1125)
Q Consensus 297 LRLaAa~sLLKLAr~-~d--~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL 343 (1125)
-|-||-.+|=-++.- .+ ..+-+..+.-++..++|+.|-||-.=+.-+
T Consensus 364 ~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~nai 413 (1075)
T KOG2171|consen 364 ERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAI 413 (1075)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 333333333333321 11 112244556666788888888887744433
No 7
>PTZ00429 beta-adaptin; Provisional
Probab=97.14 E-value=0.032 Score=70.81 Aligned_cols=177 Identities=14% Similarity=0.100 Sum_probs=118.4
Q ss_pred HHHHHHHHHhccCCc--HHHHHHHHHHHhcccccCHHHHHHHHHHHHh---ccCcchhhhHHHHHHHHHHHHhhCCcCcc
Q 001196 17 VLQDDLLKILGAKHR--LYDFLSTLSMKCSYLLFNKEHVKEILLEVAA---QKSSANAQFMQSCMDILGILARFSPLLLG 91 (1125)
Q Consensus 17 ~ar~ELLKRLg~k~~--l~etlk~LL~RsS~lifNkShV~~LL~~vs~---~~s~~~~~~~~~AleLL~~IS~~~P~LFk 91 (1125)
.+-..++.+|...++ +++.++.+++-..+. +.+.+..++.++.. ............+++.|..|...+|.+|.
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~--~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~ 333 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASRC--SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLR 333 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHH
Confidence 344556666776666 899999888765443 55666665544432 11111224556788889999999999999
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHH
Q 001196 92 GTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSV 171 (1125)
Q Consensus 92 ~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~ 171 (1125)
.|.+.+.-...|.+ .+....|.+|+..+.. ..-..++.-|..|+.+-.+.-++-||++|+.++-.-. .....
T Consensus 334 ~~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane------~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~a~~ 405 (746)
T PTZ00429 334 TNLDSFYVRYSDPP-FVKLEKLRLLLKLVTP------SVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SVAPD 405 (746)
T ss_pred HHHHhhhcccCCcH-HHHHHHHHHHHHHcCc------ccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HHHHH
Confidence 98766654445544 4788889999987642 1234467778889998889999999999986664322 23455
Q ss_pred HHHHHHHhhhcCC-CCchHHHHHHHHHhhcccc
Q 001196 172 LYKRLVDMLEEKT-HLPAVLQSLGCIAQTAMPV 203 (1125)
Q Consensus 172 L~e~Lv~~Le~~s-~l~T~L~aLgqIA~~aP~v 203 (1125)
++..|++-|..+. .....+.++-.|.+..|..
T Consensus 406 cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~ 438 (746)
T PTZ00429 406 CANLLLQIVDRRPELLPQVVTAAKDIVRKYPEL 438 (746)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHCccH
Confidence 6666666665443 3345677778888877764
No 8
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=97.05 E-value=0.0014 Score=54.00 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=38.4
Q ss_pred CceEEEecCCCCceEEEEEEEecCCCCeeEEEecC-CCceeeecC
Q 001196 828 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 871 (1125)
Q Consensus 828 G~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdD-GD~E~L~L~ 871 (1125)
|..|-+.|++|..||.|+|..+++ .+.-.|.|.| |..+.+.+.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~~ 44 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLS 44 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeHH
Confidence 678999999999999999999998 7778999977 999988754
No 9
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=97.03 E-value=0.0012 Score=57.35 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=33.6
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecC
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD 862 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdD 862 (1125)
.+|..|.|||+.+..||.|+|+.+++ .+++.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 48999999999999999999999998 6789999987
No 10
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.65 E-value=0.07 Score=64.06 Aligned_cols=289 Identities=17% Similarity=0.171 Sum_probs=171.5
Q ss_pred hHHHHHHHHHhccC--Cc--HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCcc
Q 001196 16 PVLQDDLLKILGAK--HR--LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLG 91 (1125)
Q Consensus 16 ~~ar~ELLKRLg~k--~~--l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk 91 (1125)
..+..|+.+.+.+. +. ..+.++-|++-. .+-++ +..++-.+.+...+.+-..-..+.=.|..+....|+++.
T Consensus 3 ~~~~~el~~~~~~~~~~~~~~~~~l~kli~~~-~~G~~---~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~ 78 (526)
T PF01602_consen 3 KRISQELAKILNSFKIDISKKKEALKKLIYLM-MLGYD---ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLI 78 (526)
T ss_dssp HHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHH-HTT------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHH
T ss_pred chHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcCCC---CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHH
Confidence 34556777777665 22 455556555532 23333 333333343332233333445566677888899999887
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHH
Q 001196 92 GTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSV 171 (1125)
Q Consensus 92 ~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~ 171 (1125)
-.+..|.+-|.+.|+.+...+|++|+.++.. ..-..+.+.+.++....+|--=|.|+-||..+...... .+..
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~------~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~ 151 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIRTP------EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-LVED 151 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH------HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-CHHG
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhccc------chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-HHHH
Confidence 7889999999999999999999999998632 23345788888999999997778888888877654322 2333
Q ss_pred -HHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHH
Q 001196 172 -LYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGI 248 (1125)
Q Consensus 172 -L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~AL 248 (1125)
++..|...|.+.+ -..+.+.+|.+| +..|..+..-...+...+. .++. ....| ..+..|
T Consensus 152 ~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~-~~l~--------~~~~~--------~q~~il 213 (526)
T PF01602_consen 152 ELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILC-QLLS--------DPDPW--------LQIKIL 213 (526)
T ss_dssp GHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHH-HHHT--------CCSHH--------HHHHHH
T ss_pred HHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhh-hccc--------ccchH--------HHHHHH
Confidence 5777777775554 333445555555 4455555421222222222 2221 11223 235677
Q ss_pred HHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHhhcc
Q 001196 249 KTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTP 328 (1125)
Q Consensus 249 K~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lv 328 (1125)
++|.+.+..... .. ....++..|..++. .-..-+++.|..+++.+..... +-...+..+..++
T Consensus 214 ~~l~~~~~~~~~-~~--~~~~~i~~l~~~l~------------s~~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL 276 (526)
T PF01602_consen 214 RLLRRYAPMEPE-DA--DKNRIIEPLLNLLQ------------SSSPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLL 276 (526)
T ss_dssp HHHTTSTSSSHH-HH--HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHH
T ss_pred HHHHhcccCChh-hh--hHHHHHHHHHHHhh------------ccccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHh
Confidence 777765533221 10 00335555555542 2344567888999998875433 1122344455667
Q ss_pred cCCchhHHHHHHHHHHHhHhcC
Q 001196 329 EISFPQAKKLFLSKVHQYVKDR 350 (1125)
Q Consensus 329 QD~~~eVR~~Fl~KL~k~L~~~ 350 (1125)
.++.++||-..+..|.......
T Consensus 277 ~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 277 SSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp TSSSHHHHHHHHHHHHHHCCHC
T ss_pred hcccchhehhHHHHHHHhhccc
Confidence 7999999999999998877765
No 11
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.065 Score=69.05 Aligned_cols=251 Identities=13% Similarity=0.114 Sum_probs=147.2
Q ss_pred HHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHH----HHHhhccchhHHH
Q 001196 36 LSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELV----NLLKEENEIIKEG 111 (1125)
Q Consensus 36 lk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~----~lL~d~n~~vve~ 111 (1125)
-...+.|.|.-+=.+--++-++..+.....+.+-.....++-.|-.|+.-|+.+..++..+++ ..|.|..+.|.-.
T Consensus 329 A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~A 408 (1075)
T KOG2171|consen 329 AEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYA 408 (1075)
T ss_pred HHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 334455555544444445555554443222222245567888889999999999999876665 4455566677888
Q ss_pred HHHHHHHhccchhhhhcc-cChhHHHHH-HHHhhcCChHHHHHHHHHHHhhcCCCc----cchHHHHHHHHHHhhhcCC-
Q 001196 112 ILHVLAKAGGTIREQLAA-TSSSVDLLL-ERLCLEGSRRQAKYAVHALAAITKDDG----LKSLSVLYKRLVDMLEEKT- 184 (1125)
Q Consensus 112 aLkaLAk~gk~i~e~~~~-~~s~l~~~L-~~lAleGTPrqAKyAVr~LaAls~d~~----~~~ls~L~e~Lv~~Le~~s- 184 (1125)
+|.++..++..+...+.. ....+.+.| .-+--.++++.-.||+.+|..++-.-. ..++..|++..+..|..+.
T Consensus 409 A~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~ 488 (1075)
T KOG2171|consen 409 ALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSK 488 (1075)
T ss_pred HHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 899998776544321111 111222222 223345778888899998875554321 1456666665555555443
Q ss_pred --CCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccc
Q 001196 185 --HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAH 262 (1125)
Q Consensus 185 --~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~ 262 (1125)
-.-.+++|||.+|.-+-..|..+-+.++.++.+ +|..... ++-...+.|. |.|+.-.-+++..+.
T Consensus 489 ~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~-~L~n~~~----------~d~r~Lrgkt--mEcisli~~AVGke~ 555 (1075)
T KOG2171|consen 489 PYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKN-FLQNADD----------KDLRELRGKT--MECLSLIARAVGKEK 555 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH-HHhCCCc----------hhhHHHHhhH--HHHHHHHHHHhhhhh
Confidence 446789999999999999999999999999755 5554321 1122333343 555444444444445
Q ss_pred cccchHHHHHHHHHhhhcCCCcCCc-CCChhhHhhHHHH
Q 001196 263 IRPGIDDLLGILKSMLSYGEMSEDI-ESSSVDKAHLRLA 300 (1125)
Q Consensus 263 ~~~~~~~llkLL~~ll~~GEL~~~~-~tp~~~kArLRLa 300 (1125)
..+.+..++.+|..+- .|+...+- .++....+|-|++
T Consensus 556 F~~~a~eliqll~~~~-~~~~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 556 FLPLAEELIQLLLELQ-GSDQDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred hhHhHHHHHHHHHhhc-ccchhhccccHHHHHHHHHHHH
Confidence 5666777888877653 33333221 1334445555543
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.74 E-value=1.7 Score=52.29 Aligned_cols=259 Identities=14% Similarity=0.104 Sum_probs=150.0
Q ss_pred cCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhh
Q 001196 48 FNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQL 127 (1125)
Q Consensus 48 fNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~ 127 (1125)
.+.+-+.-+++.+.++..+.+......|++.|-.|. .|.+...-...+.++|.+.++.|.-.++-++.++.+..|+..
T Consensus 72 ~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~ 149 (526)
T PF01602_consen 72 EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV 149 (526)
T ss_dssp TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH
T ss_pred cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH
Confidence 344433334444444444455556677888888777 788888878999999999998888888888888755433222
Q ss_pred cccChhHHHHHHHHhhcCChHHHHHHHHHHHhh-cCCCc-cchHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhcccccc
Q 001196 128 AATSSSVDLLLERLCLEGSRRQAKYAVHALAAI-TKDDG-LKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFE 205 (1125)
Q Consensus 128 ~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAl-s~d~~-~~~ls~L~e~Lv~~Le~~s~l~T~L~aLgqIA~~aP~vfe 205 (1125)
. .. +.+.|.++....+|.-.-.|+.+|..+ ..+.. ...+..++..|...+...+.+ .....|..|..++|..+.
T Consensus 150 ~--~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 150 E--DE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPW-LQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp H--GG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHH-HHHHHHHHHTTSTSSSHH
T ss_pred H--HH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchH-HHHHHHHHHHhcccCChh
Confidence 1 12 789999999888888888888888877 22211 023344455544444222222 234455555566666554
Q ss_pred chh-HHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCc
Q 001196 206 TRE-SEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 284 (1125)
Q Consensus 206 ~~~-~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~ 284 (1125)
... ..+...+...+- +.....-..|++++....-. ......++..|..++..
T Consensus 226 ~~~~~~~i~~l~~~l~-----------------s~~~~V~~e~~~~i~~l~~~------~~~~~~~~~~L~~lL~s---- 278 (526)
T PF01602_consen 226 DADKNRIIEPLLNLLQ-----------------SSSPSVVYEAIRLIIKLSPS------PELLQKAINPLIKLLSS---- 278 (526)
T ss_dssp HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHSSS------HHHHHHHHHHHHHHHTS----
T ss_pred hhhHHHHHHHHHHHhh-----------------ccccHHHHHHHHHHHHhhcc------hHHHHhhHHHHHHHhhc----
Confidence 432 345555543222 11122245677776643311 11344455666665521
Q ss_pred CCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHh
Q 001196 285 EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVK 348 (1125)
Q Consensus 285 ~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L~ 348 (1125)
....+|+.|-.+|..|+..+...+....+. +..+..|+...||..=++-|.....
T Consensus 279 --------~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~-~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 279 --------SDPNVRYIALDSLSQLAQSNPPAVFNQSLI-LFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp --------SSHHHHHHHHHHHHHHCCHCHHHHGTHHHH-HHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred --------ccchhehhHHHHHHHhhcccchhhhhhhhh-hheecCCCChhHHHHHHHHHhhccc
Confidence 123489999999999998752222222222 2245557778898876666655443
No 13
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=95.72 E-value=0.008 Score=66.80 Aligned_cols=64 Identities=27% Similarity=0.422 Sum_probs=49.7
Q ss_pred CCCCCCCCcccCceEEEecCCCCceEEEEEEEecC-CCCeeEEEecCCC----ceeeecC---cceEEEecC
Q 001196 817 KNAGVNIEDLIGYRIKVWWPMDKQFYEGTIKSYDP-IKKKHVILYDDED----VEVLRLD---KERWELLDN 880 (1125)
Q Consensus 817 ~~~~~~~~~lVG~rikV~WP~D~~wY~G~V~~yd~-~~~kH~V~YdDGD----~E~L~L~---~Ek~~~~~~ 880 (1125)
.-+...++.+||++|..-||+++.||.+.|+.|+. ...+|.+.||-.+ ++|++|. .|.++|...
T Consensus 151 ~~~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g~ 222 (273)
T KOG4675|consen 151 SWGNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEGG 222 (273)
T ss_pred ccccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccCC
Confidence 34567788899999999999999999999999555 4557888887554 4566664 677777764
No 14
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.50 E-value=0.69 Score=56.33 Aligned_cols=221 Identities=17% Similarity=0.176 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhh---cCCh
Q 001196 71 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCL---EGSR 147 (1125)
Q Consensus 71 ~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAl---eGTP 147 (1125)
..-+|+++|..||..+|+.-..|-.++-.++.+.|-.+..-++-+|-+.|.. + .-.+++...-.|.- .|--
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~--e----~idrLv~~I~sfvhD~SD~FK 392 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTE--E----TIDRLVNLIPSFVHDMSDGFK 392 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCch--h----hHHHHHHHHHHHHHhhccCce
Confidence 4467899999999999999998888888888888887777778888777742 0 11122222222221 1223
Q ss_pred HHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC-CC-chHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCC
Q 001196 148 RQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HL-PAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNK 225 (1125)
Q Consensus 148 rqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s-~l-~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~ 225 (1125)
..|=-|+|-|.-+.+.+...++.=|...|++ .+. .| -..+-+|+-+-.+.|+.-+.--+.+..||
T Consensus 393 iI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fI---------- 459 (898)
T COG5240 393 IIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFI---------- 459 (898)
T ss_pred EEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH----------
Confidence 3344455555433333332222222222211 221 22 23344555555555555544444555554
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHH
Q 001196 226 IRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAV 305 (1125)
Q Consensus 226 ~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sL 305 (1125)
++++.-+ .++++| .+++-..-.+..-..-+-.+++.++ -+-++.|-+|-.||
T Consensus 460 ----------EDcey~~---I~vrIL--~iLG~EgP~a~~P~~yvrhIyNR~i-------------LEN~ivRsaAv~aL 511 (898)
T COG5240 460 ----------EDCEYHQ---ITVRIL--GILGREGPRAKTPGKYVRHIYNRLI-------------LENNIVRSAAVQAL 511 (898)
T ss_pred ----------hhcchhH---HHHHHH--HHhcccCCCCCCcchHHHHHHHHHH-------------HhhhHHHHHHHHHH
Confidence 1111111 011211 1122211111111122333444432 24578999999999
Q ss_pred HhhhcccCCCCCHHHHH-HHhhcccCCchhHHHH
Q 001196 306 LRLSRQWDHKIPVDVFH-LTLRTPEISFPQAKKL 338 (1125)
Q Consensus 306 LKLAr~~d~~Itp~~F~-~La~lvQD~~~eVR~~ 338 (1125)
-|.|-...+.+.++... .|-+..+|...+||.+
T Consensus 512 skf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdr 545 (898)
T COG5240 512 SKFALNISDVVSPQSVENALKRCLNDQDDEVRDR 545 (898)
T ss_pred HHhccCccccccHHHHHHHHHHHhhcccHHHHHH
Confidence 99987766666665544 4447889999999977
No 15
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.37 E-value=0.72 Score=58.52 Aligned_cols=201 Identities=19% Similarity=0.172 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHHHhhCCcCccc----cHHHHHHHHhhccchhHHHHHHHHHHhccchhhh-hcccChhHHHHHHHHhhc
Q 001196 70 QFMQSCMDILGILARFSPLLLGG----TEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-LAATSSSVDLLLERLCLE 144 (1125)
Q Consensus 70 ~~~~~AleLL~~IS~~~P~LFk~----~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~-~~~~~s~l~~~L~~lAle 144 (1125)
.....|..||..+|.....-.+. .+.-|+++|..++..+...++..|.+.+- +.++ ..-....+++.|.++.-.
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcC
Confidence 44566677777777665544443 35778888877776555555555555431 1111 111355688899999999
Q ss_pred CChHHHHHHHHHHHhhcCCCcc---chHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhc--cccccchhHHHHHHHHHhh
Q 001196 145 GSRRQAKYAVHALAAITKDDGL---KSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTA--MPVFETRESEIEEFIKSKI 219 (1125)
Q Consensus 145 GTPrqAKyAVr~LaAls~d~~~---~~ls~L~e~Lv~~Le~~s~l~T~L~aLgqIA~~a--P~vfe~~~~eI~~fIiK~L 219 (1125)
++...-.-|.++|..++-+.+. +.-..++..|+..|....+....|..|.+|.... -..|. .++.+.+|++.|
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~--~TdcIp~L~~~L 420 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFA--YTDCIPQLMQML 420 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHh--hcchHHHHHHHH
Confidence 9988889999999988877653 1122345677776765543333566666666543 23342 234567887766
Q ss_pred hcccCCCCCCCCCCC-------CCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhh-hcC
Q 001196 220 LRCSNKIRNDTKACW-------DDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML-SYG 281 (1125)
Q Consensus 220 Ll~~~~~~~~~~~eW-------~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll-~~G 281 (1125)
+..+....+ ...-| ........+.--+|+.|+.+.+...+ ..++++++++- +.|
T Consensus 421 l~~~~~~v~-~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D-------~lLlKlIRNiS~h~~ 482 (708)
T PF05804_consen 421 LENSEEEVQ-LELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD-------PLLLKLIRNISQHDG 482 (708)
T ss_pred HhCCCcccc-HHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc-------HHHHHHHHHHHhcCc
Confidence 654332111 00111 11111222234456666666644332 23789999984 444
No 16
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=95.13 E-value=0.041 Score=54.71 Aligned_cols=45 Identities=31% Similarity=0.461 Sum_probs=35.0
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceee
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVL 868 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L 868 (1125)
+.++||.||---|-.+.-||.|+|+. +....+.+|..|||.+..|
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~~v 45 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYECRV 45 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EEEE
T ss_pred CCcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCcccee
Confidence 35789999999999777779999999 4677899999999997644
No 17
>PTZ00429 beta-adaptin; Provisional
Probab=94.75 E-value=12 Score=48.38 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=115.3
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHH-HHHHHHHHHhhCCcCccc--cH
Q 001196 18 LQDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQS-CMDILGILARFSPLLLGG--TE 94 (1125)
Q Consensus 18 ar~ELLKRLg~k~~l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~-AleLL~~IS~~~P~LFk~--~v 94 (1125)
+..-|.|=+...+| +++.|-.|+..-|-..+-++.++.-+.++..+.+.-.... |+-++. |-..+|.++.. .+
T Consensus 106 aINtl~KDl~d~Np---~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~K-ly~~~pelv~~~~~~ 181 (746)
T PTZ00429 106 AVNTFLQDTTNSSP---VVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGK-LFHDDMQLFYQQDFK 181 (746)
T ss_pred HHHHHHHHcCCCCH---HHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHhhCcccccccchH
Confidence 33555666665554 5778888888889999999999887766554433222233 444444 56789999864 37
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHH
Q 001196 95 EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYK 174 (1125)
Q Consensus 95 ~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e 174 (1125)
+.|.++|.+.|+.|+..++.+|..+...-+..+......+...|..+-..+.+-|. +-..+|+...+... ..+..|++
T Consensus 182 ~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi-~IL~lL~~y~P~~~-~e~~~il~ 259 (746)
T PTZ00429 182 KDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQL-YILELLAAQRPSDK-ESAETLLT 259 (746)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHH-HHHHHHHhcCCCCc-HHHHHHHH
Confidence 89999999999999999999999874321111111222333444444445677888 77777764433322 23456788
Q ss_pred HHHHhhhcCCCCchHHHHHHHHHhhcccc
Q 001196 175 RLVDMLEEKTHLPAVLQSLGCIAQTAMPV 203 (1125)
Q Consensus 175 ~Lv~~Le~~s~l~T~L~aLgqIA~~aP~v 203 (1125)
.+...|... +-.-.|.++-.|..+.+..
T Consensus 260 ~l~~~Lq~~-N~AVVl~Aik~il~l~~~~ 287 (746)
T PTZ00429 260 RVLPRMSHQ-NPAVVMGAIKVVANLASRC 287 (746)
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHhcCcC
Confidence 887776654 4455677777777776543
No 18
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=8.2 Score=48.30 Aligned_cols=225 Identities=16% Similarity=0.112 Sum_probs=137.6
Q ss_pred ChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccchh
Q 001196 131 SSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRE 208 (1125)
Q Consensus 131 ~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~ 208 (1125)
...+...|.+||-.+.++.-++|+..|.++.. +.+.-..++...+++|.+.. -=-+.++.+.-.+...|.-.+...
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 33455559999999999988899999987776 44444567888888887664 335678899999999985555443
Q ss_pred HH--HHHHHHHhhhcccCCCCCCCCCCCC-------------CCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHH
Q 001196 209 SE--IEEFIKSKILRCSNKIRNDTKACWD-------------DRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGI 273 (1125)
Q Consensus 209 ~e--I~~fIiK~LLl~~~~~~~~~~~eW~-------------~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkL 273 (1125)
++ ...-+...|-...++ -+|. ..|++.....+.=|+|. +++..+.++-++ +
T Consensus 274 ~e~kl~D~aF~~vC~~v~D------~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms-~lRRkr~ahkrp------k- 339 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRD------RSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS-RLRRKRTAHKRP------K- 339 (823)
T ss_pred hhhhhHHHHHHHHHHHHhc------CceeeeehHHHHhchHHHhHHHHHHHHHHHHHhh-hhhhhhhcccch------H-
Confidence 33 233333333322221 2231 23444444344444443 222222111111 1
Q ss_pred HHHhhhcCCCcCCcCC----------------------------ChhhHhhHHHHHHHHHHhhhcc-cCCCCCHHHHHHH
Q 001196 274 LKSMLSYGEMSEDIES----------------------------SSVDKAHLRLASAKAVLRLSRQ-WDHKIPVDVFHLT 324 (1125)
Q Consensus 274 L~~ll~~GEL~~~~~t----------------------------p~~~kArLRLaAa~sLLKLAr~-~d~~Itp~~F~~L 324 (1125)
++.+.||.+..... =..+....|-+|.-+|-+||.. +..-. .-+.-|
T Consensus 340 --~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~--~aldfL 415 (823)
T KOG2259|consen 340 --ALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV--RALDFL 415 (823)
T ss_pred --HHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH--HHHHHH
Confidence 11233433322111 1346788999999999999974 44333 445556
Q ss_pred hhcccCCchhHHHHHHHHHHHhHhcCCCchhHHHHHHhhhcCCCCchhHHH
Q 001196 325 LRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEE 375 (1125)
Q Consensus 325 a~lvQD~~~eVR~~Fl~KL~k~L~~~~Lp~RF~alffL~A~e~~epe~~~~ 375 (1125)
+-+.+|+-..||-.=+.-|+....+..|...++-.+.=+..+.....++.+
T Consensus 416 vDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l 466 (823)
T KOG2259|consen 416 VDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREAL 466 (823)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHH
Confidence 678899999999999888988888888888888877655544433333333
No 19
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=16 Score=46.78 Aligned_cols=203 Identities=16% Similarity=0.172 Sum_probs=116.5
Q ss_pred HHHHHHhccCCc--HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHH
Q 001196 20 DDLLKILGAKHR--LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEEL 97 (1125)
Q Consensus 20 ~ELLKRLg~k~~--l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L 97 (1125)
.+|..-|.+..- -++-|+-++--. ---..|..++-.|.+....+|...-.--.=.|+..+...|.+--=.+..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~i----A~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntf 113 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALI----AKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTF 113 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHH----hcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHH
Confidence 445555554332 556555554332 22233555555454443345554445556678888999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCC-CccchHHHHHHHH
Q 001196 98 VNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKD-DGLKSLSVLYKRL 176 (1125)
Q Consensus 98 ~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d-~~~~~ls~L~e~L 176 (1125)
-+.|.|.|..+--.+|++|+.+- ++ .+..-...+.++.+.--+|..=|-|+++|--+-.- .+.. .+|++-|
T Consensus 114 Qk~L~DpN~LiRasALRvlSsIR--vp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k--~qL~e~I 185 (968)
T KOG1060|consen 114 QKALKDPNQLIRASALRVLSSIR--VP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK--DQLEEVI 185 (968)
T ss_pred HhhhcCCcHHHHHHHHHHHHhcc--hh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH--HHHHHHH
Confidence 99999999999999999999763 21 12222344455555555665556666665433221 2211 1333333
Q ss_pred HHhhhcCCCCchHHHHHHHHHhhccccccc---hhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 001196 177 VDMLEEKTHLPAVLQSLGCIAQTAMPVFET---RESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVK 253 (1125)
Q Consensus 177 v~~Le~~s~l~T~L~aLgqIA~~aP~vfe~---~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN 253 (1125)
-.-|.+.+-++ +=+++..+-.++|+-|+- +...+.+++. +-.+|+ +++.|.+|++
T Consensus 186 ~~LLaD~splV-vgsAv~AF~evCPerldLIHknyrklC~ll~-------------dvdeWg--------QvvlI~mL~R 243 (968)
T KOG1060|consen 186 KKLLADRSPLV-VGSAVMAFEEVCPERLDLIHKNYRKLCRLLP-------------DVDEWG--------QVVLINMLTR 243 (968)
T ss_pred HHHhcCCCCcc-hhHHHHHHHHhchhHHHHhhHHHHHHHhhcc-------------chhhhh--------HHHHHHHHHH
Confidence 33344444221 124555666778877753 2344444431 224575 3788999998
Q ss_pred hhc
Q 001196 254 SYL 256 (1125)
Q Consensus 254 ~Ll 256 (1125)
+++
T Consensus 244 YAR 246 (968)
T KOG1060|consen 244 YAR 246 (968)
T ss_pred HHH
Confidence 876
No 20
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=28 Score=44.26 Aligned_cols=195 Identities=14% Similarity=0.159 Sum_probs=117.8
Q ss_pred chhhHHHHHHHHHhccCCc-HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCcc
Q 001196 13 IYFPVLQDDLLKILGAKHR-LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLG 91 (1125)
Q Consensus 13 ~~~~~ar~ELLKRLg~k~~-l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk 91 (1125)
+-|+...++++.-|+...| +-.=.-.+|||. ++-| .+++..-+.++..--.+.+.+...+|-.+..++|+.+|.=|-
T Consensus 140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykv-FLkY-PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKV-FLKY-PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHH-HHhh-hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 3344555888888888877 334444556665 3334 333433333332222333457788999999999999999999
Q ss_pred ccHHHHHHHHhh--ccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHH-HHHHHHHHhhcCCCcc--
Q 001196 92 GTEEELVNLLKE--ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQA-KYAVHALAAITKDDGL-- 166 (1125)
Q Consensus 92 ~~v~~L~~lL~d--~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqA-KyAVr~LaAls~d~~~-- 166 (1125)
.....+.++|.. +|. +.-.+|+.++....- .|...+++++-|.++.-.-...-- =-.|+++.+.+-..|.
T Consensus 218 ~LAP~ffkllttSsNNW-mLIKiiKLF~aLtpl----EPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNNW-VLIKLLKLFAALTPL----EPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred cccHHHHHHHhccCCCe-ehHHHHHHHhhcccc----CchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 999999999997 454 455677777766532 345677788888877642211110 1223343322111121
Q ss_pred --chHHHHHHHHHHhhhcCC---CCchHHHHHHHHHhhccccccchhHHHHHHH
Q 001196 167 --KSLSVLYKRLVDMLEEKT---HLPAVLQSLGCIAQTAMPVFETRESEIEEFI 215 (1125)
Q Consensus 167 --~~ls~L~e~Lv~~Le~~s---~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fI 215 (1125)
......+++|.--++..+ .++. |-+++-|+..+|.....|.+.|.+-+
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlg-Llam~KI~ktHp~~Vqa~kdlIlrcL 345 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLG-LLAMSKILKTHPKAVQAHKDLILRCL 345 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHH-HHHHHHHhhhCHHHHHHhHHHHHHHh
Confidence 122223444444455554 3455 66788999999998888877776654
No 21
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.41 E-value=27 Score=43.57 Aligned_cols=351 Identities=16% Similarity=0.187 Sum_probs=162.0
Q ss_pred cccHHHHHHHHhh--ccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccch
Q 001196 91 GGTEEELVNLLKE--ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKS 168 (1125)
Q Consensus 91 k~~v~~L~~lL~d--~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ 168 (1125)
..|++....+|.- .+......+-+.+++|-+.|| .....-+..+-+||.......=+.||+.|-.++.+... .
T Consensus 19 ~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP----~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~-~ 93 (556)
T PF05918_consen 19 SQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFP----DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE-H 93 (556)
T ss_dssp GGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-G----GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T--
T ss_pred ccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH-H
Confidence 5666666666664 344455566677777766644 45667888899999999988889999999888876432 3
Q ss_pred HHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHH
Q 001196 169 LSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIY 246 (1125)
Q Consensus 169 ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ 246 (1125)
+..+..-|+..|.... -+..+=.+|.+|.+.+|... +..+ ..+|+..... ++ ..+.-
T Consensus 94 v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t------L~~l-f~~i~~~~~~------------de--~~Re~ 152 (556)
T PF05918_consen 94 VSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT------LTGL-FSQIESSKSG------------DE--QVRER 152 (556)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHH------HHHH-HHHHH---HS-------------H--HHHHH
T ss_pred HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH------HHHH-HHHHHhcccC------------ch--HHHHH
Confidence 4555666666665443 55566678888888888665 2222 2233321100 11 23455
Q ss_pred HHHHHHHhhcCCcccccccc--hHH-HHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHH
Q 001196 247 GIKTLVKSYLPVKDAHIRPG--IDD-LLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHL 323 (1125)
Q Consensus 247 ALK~LvN~Lla~~~~~~~~~--~~~-llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~ 323 (1125)
+|++|...+.++..+...+. .+. ++..+..++ .+++ .....| -..+|+-.+.|...-++.-.+.
T Consensus 153 ~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL--~DVT---------aeEF~l--~m~lL~~lk~~~~~~t~~g~qe 219 (556)
T PF05918_consen 153 ALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL--QDVT---------AEEFEL--FMSLLKSLKIYGGKQTIEGRQE 219 (556)
T ss_dssp HHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC--TT-----------HHHHHH--HHHHHHTSGG---GSSHHHHHH
T ss_pred HHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH--Hhcc---------HHHHHH--HHHHHHhCccccccCChHHHHH
Confidence 78888888888765443321 111 222222222 1111 122222 2234444444332223332222
Q ss_pred Hhhccc---------C-CchhHHHHHHHHHHH---hHhcCCCchhHHHHHHhhhcCCCCchhH-HHHHHHHHHHHHHHHH
Q 001196 324 TLRTPE---------I-SFPQAKKLFLSKVHQ---YVKDRLLDAKYACAFLFGITESKSPEFE-EEKQNLADIIQMHHQM 389 (1125)
Q Consensus 324 La~lvQ---------D-~~~eVR~~Fl~KL~k---~L~~~~Lp~RF~alffL~A~e~~epe~~-~~K~~L~~~I~~~~~s 389 (1125)
|+-++. + ..++.=.+|+..+.. +...+.-+.+|+.++.--.+ |.=.+.. ..|-.|...+ ..
T Consensus 220 Lv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvl-P~l~~l~e~~kl~lLk~l----AE 294 (556)
T PF05918_consen 220 LVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVL-PKLSDLPEDRKLDLLKLL----AE 294 (556)
T ss_dssp HHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTC-CCTT-----HHHHHHHHH----HH
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhc-CChhhCChHHHHHHHHHH----HH
Confidence 221111 0 112333446666655 44455567777776654333 2211111 1222222222 11
Q ss_pred HHhhhccccccccccccchhhHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHHHHHHHHhhccCccccccccccchHHHH
Q 001196 390 KARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVI 469 (1125)
Q Consensus 390 r~R~~s~~s~~~~~~~~pEyvLpyLIHLLAHH~~Pdf~~~~d~~al~~~~~yL~FyLe~La~~~e~~~~~~~~~eNiSlL 469 (1125)
.+..... .. ++-+|+.+..+|-+. .|.-.+.+++ .| ....||.|.|..|+... .+-..+|
T Consensus 295 ~s~~~~~-------~d-~~~~L~~i~~~L~~y-mP~~~~~~~l-~f-s~vEcLL~afh~La~k~---------p~~~~~l 354 (556)
T PF05918_consen 295 LSPFCGA-------QD-ARQLLPSIFQLLKKY-MPSKKTEPKL-QF-SYVECLLYAFHQLARKS---------PNSLNFL 354 (556)
T ss_dssp HHTT-----------T-HHHHHHHHHHHHHTT-S-----------H-HHHHHHHHHHHHHHTT----------THHHH--
T ss_pred HcCCCCc-------cc-HHHHHHHHHHHHHHh-CCCCCCCCcc-cc-hHhhHHHHHHHHHhhhC---------cchhhhH
Confidence 1111110 22 566677776666544 1422221221 12 34779999999999861 1445566
Q ss_pred HHHHHHhhccc--Ccccc---cC----CcchHHHHHHHHHHHHHHhc
Q 001196 470 ISIFRSIKCSE--DIVDA---AK----SKNSHAICDLGLSITKRLSR 507 (1125)
Q Consensus 470 y~La~rIKq~r--Davd~---e~----S~nLy~LcDLAq~IIk~~aq 507 (1125)
+-+. +.+.+ |.... +. ..+|-.+.+++|.-|+.+.+
T Consensus 355 Cgyk--~vtgQpsd~~~~~~~~~~kdf~~RL~yl~~~~q~yikkl~~ 399 (556)
T PF05918_consen 355 CGYK--IVTGQPSDRYGEDDAEKLKDFRERLQYLARGTQAYIKKLKQ 399 (556)
T ss_dssp ---------------------TTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhc--ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 33332 33322 21 36789999999999998773
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.30 E-value=26 Score=43.09 Aligned_cols=149 Identities=16% Similarity=0.104 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHhhCCc---Ccccc--HHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhc
Q 001196 70 QFMQSCMDILGILARFSPL---LLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLE 144 (1125)
Q Consensus 70 ~~~~~AleLL~~IS~~~P~---LFk~~--v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAle 144 (1125)
.....++..|..++..... ++..+ ...|+.+|.+.|..+...++++|..+++.-..-..-.+..+...|.+++..
T Consensus 92 ~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~ 171 (503)
T PF10508_consen 92 KVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ 171 (503)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc
Confidence 3344455556666554433 22222 366778888888889999999999887642211111244558888888877
Q ss_pred CChHHHHHHHHHHHhhcCCCcc----chHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccc-hhHHHHHHHHH
Q 001196 145 GSRRQAKYAVHALAAITKDDGL----KSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFET-RESEIEEFIKS 217 (1125)
Q Consensus 145 GTPrqAKyAVr~LaAls~d~~~----~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~-~~~eI~~fIiK 217 (1125)
.+...=-.+..+++.++.-+.. ...+.++..++..|+..+ --.+.|..|+++|. .|.-+.- ....|...|++
T Consensus 172 ~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~ 250 (503)
T PF10508_consen 172 SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSN 250 (503)
T ss_pred cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHH
Confidence 4431111223334333333221 111236777777787755 34677888888888 5544321 12345555554
Q ss_pred hh
Q 001196 218 KI 219 (1125)
Q Consensus 218 ~L 219 (1125)
.|
T Consensus 251 ~l 252 (503)
T PF10508_consen 251 LL 252 (503)
T ss_pred HH
Confidence 33
No 23
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=92.37 E-value=0.26 Score=55.59 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=40.0
Q ss_pred CcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEec-CCCceeeecCc
Q 001196 824 EDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYD-DEDVEVLRLDK 872 (1125)
Q Consensus 824 ~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~Yd-DGD~E~L~L~~ 872 (1125)
.--||-+|...|-.|..||.++|++.+...+...|+|. -|..|.+.|..
T Consensus 68 ~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~d 117 (264)
T PF06003_consen 68 KWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSD 117 (264)
T ss_dssp ---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhh
Confidence 44499999999999999999999999999999999995 57788888873
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=91.65 E-value=3.9 Score=57.28 Aligned_cols=148 Identities=20% Similarity=0.175 Sum_probs=97.4
Q ss_pred cccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCc-----cccHHHHHHHHhhccchhHHHHHHHHHHhc
Q 001196 46 LLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLL-----GGTEEELVNLLKEENEIIKEGILHVLAKAG 120 (1125)
Q Consensus 46 lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LF-----k~~v~~L~~lL~d~n~~vve~aLkaLAk~g 120 (1125)
.+.+...|+.|++.+... .......|...|..|+..++..= .+-+..|+++|...+..+.+.+.-+|++++
T Consensus 441 aIi~~ggIp~LV~LL~s~----s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa 516 (2102)
T PLN03200 441 ALGGREGVQLLISLLGLS----SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLC 516 (2102)
T ss_pred HHHHcCcHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 455566788888865532 23455678889989988776422 245799999999888888999999999876
Q ss_pred cchhhhh--cccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC--CCchHHHHHHHH
Q 001196 121 GTIREQL--AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCI 196 (1125)
Q Consensus 121 k~i~e~~--~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqI 196 (1125)
.. .++. .-.....++.|.++=..|+++.=+.|+.+|..++...+. +.+..++..|...+ .....|.+||.|
T Consensus 517 ~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~----~~I~~Lv~LLlsdd~~~~~~aL~vLgnI 591 (2102)
T PLN03200 517 CH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA----ATISQLTALLLGDLPESKVHVLDVLGHV 591 (2102)
T ss_pred CC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch----hHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 43 1111 111234455666666678888888999999877655432 23456666554443 233357788888
Q ss_pred Hhhccc
Q 001196 197 AQTAMP 202 (1125)
Q Consensus 197 A~~aP~ 202 (1125)
......
T Consensus 592 lsl~~~ 597 (2102)
T PLN03200 592 LSVASL 597 (2102)
T ss_pred Hhhcch
Confidence 665543
No 25
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.15 E-value=33 Score=43.97 Aligned_cols=249 Identities=16% Similarity=0.141 Sum_probs=150.2
Q ss_pred chhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCC
Q 001196 67 ANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS 146 (1125)
Q Consensus 67 ~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGT 146 (1125)
+....+..|.+....+...+|..|...+..|--+|...+..+--.++++|.+.+-+.|+..- .-..-|+.+..--+
T Consensus 257 K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~----~cN~elE~lItd~N 332 (865)
T KOG1078|consen 257 KSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT----VCNLDLESLITDSN 332 (865)
T ss_pred hhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc----ccchhHHhhhcccc
Confidence 33444556777888899999999999888888778777777778899999998866553221 12233777888788
Q ss_pred hHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhh-cCC-CCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccC
Q 001196 147 RRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLE-EKT-HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSN 224 (1125)
Q Consensus 147 PrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le-~~s-~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~ 224 (1125)
+.-|-||+..|. .++... ....|.+.|..... ..+ .......++-.+... |......++.|+.+ +|....
T Consensus 333 rsIat~AITtLL-KTG~e~--sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~----fp~k~~~~m~FL~~-~Lr~eG 404 (865)
T KOG1078|consen 333 RSIATLAITTLL-KTGTES--SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLK----FPRKHTVMMNFLSN-MLREEG 404 (865)
T ss_pred cchhHHHHHHHH-Hhcchh--HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhh----ccHHHHHHHHHHHH-HHHhcc
Confidence 889999999988 454422 33445555554433 223 445556666655554 44456678888764 554422
Q ss_pred CCCCCCCCCCCC-----CcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChh-------
Q 001196 225 KIRNDTKACWDD-----RSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSV------- 292 (1125)
Q Consensus 225 ~~~~~~~~eW~~-----~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~------- 292 (1125)
+-+.+..-++ ..+.-.+|..||--|+-....+. ..+...++|.-++..|-.. .+|..
T Consensus 405 --g~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce------~~~i~~rILhlLG~EgP~a---~~Pskyir~iyN 473 (865)
T KOG1078|consen 405 --GFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE------FTQIAVRILHLLGKEGPKA---PNPSKYIRFIYN 473 (865)
T ss_pred --CchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc------chHHHHHHHHHHhccCCCC---CCcchhhHHHhh
Confidence 1110000000 01122335555555544443222 1223445665555566333 22322
Q ss_pred ----hHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHhhcccCCchhHHHHH
Q 001196 293 ----DKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLF 339 (1125)
Q Consensus 293 ----~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lvQD~~~eVR~~F 339 (1125)
+-++.|.+|-.+|-|... -+....+....++-+-+.|...+||.+-
T Consensus 474 RviLEn~ivRaaAv~alaKfg~-~~~~l~~sI~vllkRc~~D~DdevRdrA 523 (865)
T KOG1078|consen 474 RVILENAIVRAAAVSALAKFGA-QDVVLLPSILVLLKRCLNDSDDEVRDRA 523 (865)
T ss_pred hhhhhhhhhHHHHHHHHHHHhc-CCCCccccHHHHHHHHhcCchHHHHHHH
Confidence 246779999999888883 2444455666777788899999999873
No 26
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.18 E-value=4.1 Score=42.96 Aligned_cols=154 Identities=9% Similarity=0.064 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHhhhcccCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhHHH--HHHhhhcCCCCchhH
Q 001196 296 HLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYAC--AFLFGITESKSPEFE 373 (1125)
Q Consensus 296 rLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L~~~~Lp~RF~a--lffL~A~e~~epe~~ 373 (1125)
-+|..|..+|=-||.+|...+.+- ...+...++|+.+.||+.=+.-|.+.+..+.+.+|-.. -++.+..++++..+.
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~~-~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~ 81 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEPY-LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRS 81 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHH
Confidence 478888889999998887766432 22333577899999999999999999998877554332 333333444333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHhhhcCC-CCCCCCcccCHHHHHHHHHHHHHHHHHhhcc
Q 001196 374 EEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHH-SCPDIDECKDVKAFELVYCRLYFIVSMLIHK 452 (1125)
Q Consensus 374 ~~K~~L~~~I~~~~~sr~R~~s~~s~~~~~~~~pEyvLpyLIHLLAHH-~~Pdf~~~~d~~al~~~~~yL~FyLe~La~~ 452 (1125)
.++..+..+... . . ...+--.||=+|..|++. ..|.+. ..+.+.+ ...+.|+|+.+-..
T Consensus 82 ~A~~~~~e~~~~--------~----~----~~~i~~~~~e~i~~l~~~~~~~~~~-~~~~~~~---~~I~~fll~~i~~d 141 (178)
T PF12717_consen 82 LARSFFSELLKK--------R----N----PNIIYNNFPELISSLNNCYEHPVYG-PLSREKR---KKIYKFLLDFIDKD 141 (178)
T ss_pred HHHHHHHHHHHh--------c----c----chHHHHHHHHHHHHHhCcccccccc-ccCHHHH---HHHHHHHHHHcCcH
Confidence 333333322211 0 0 111233344444455543 113331 1133333 55667777776621
Q ss_pred CccccccccccchHHHHHHHHHHhhccc
Q 001196 453 DEDVKSEASNKESISVIISIFRSIKCSE 480 (1125)
Q Consensus 453 ~e~~~~~~~~~eNiSlLy~La~rIKq~r 480 (1125)
..+.+++-+|.+|+..+.
T Consensus 142 ----------~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 142 ----------KQKESLVEKLCQRFLNAV 159 (178)
T ss_pred ----------HHHHHHHHHHHHHHHHHc
Confidence 279999999999998876
No 27
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.64 E-value=1.3e+02 Score=40.46 Aligned_cols=187 Identities=15% Similarity=0.106 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHH
Q 001196 32 LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEG 111 (1125)
Q Consensus 32 l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~ 111 (1125)
.+|.+-..++- ---|+..-|..|-++++-...+......-.++.+|-++|...|.+-..+.+.|+.+=. ..+..++.
T Consensus 639 slE~vl~~lv~--~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~igl-g~p~l~~~ 715 (1251)
T KOG0414|consen 639 SLEEVLCELVA--RGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQIGL-GEPRLAVD 715 (1251)
T ss_pred hHHHHHHHHHh--CCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHhcc-CcHHHHHH
Confidence 44444333332 4456777777777665333223222233458899999999999999999888765422 45667888
Q ss_pred HHHHHHHhc-cchhh------h-hcccChhHHHHHHHHhhcCCh-------HHHHHHHHHHHhhcCCCccchHHHHHHHH
Q 001196 112 ILHVLAKAG-GTIRE------Q-LAATSSSVDLLLERLCLEGSR-------RQAKYAVHALAAITKDDGLKSLSVLYKRL 176 (1125)
Q Consensus 112 aLkaLAk~g-k~i~e------~-~~~~~s~l~~~L~~lAleGTP-------rqAKyAVr~LaAls~d~~~~~ls~L~e~L 176 (1125)
+|++++.++ .++.+ . ..+....+...|..+-..+=+ .-|-.|+.+|.+++.-++. ....|+..+
T Consensus 716 ~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~~Pe~-la~~li~~~ 794 (1251)
T KOG0414|consen 716 VLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISMLPEV-LATQLIRKL 794 (1251)
T ss_pred HHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhcChHH-HHHHHHHHH
Confidence 999999764 22221 0 124566788888888877522 4578889999888887764 344566666
Q ss_pred HHh----hh-cC---------CCCch--------HHHHHHHHHhhccccccch-hHHHHHHHHHhhhcc
Q 001196 177 VDM----LE-EK---------THLPA--------VLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRC 222 (1125)
Q Consensus 177 v~~----Le-~~---------s~l~T--------~L~aLgqIA~~aP~vfe~~-~~eI~~fIiK~LLl~ 222 (1125)
+.+ ++ .. ....+ .|..+|++|-..+...+.- ..++.+..++..+..
T Consensus 795 ~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~~kRr~~~~~~~e 863 (1251)
T KOG0414|consen 795 LKQDFESLECEADTITDDPRKSDALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKEFKRRKIKTELEE 863 (1251)
T ss_pred HHHHhhhhhhhhccccCCcccccccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 655 22 10 12222 4555666766666555543 446777777666654
No 28
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.24 E-value=46 Score=37.98 Aligned_cols=154 Identities=10% Similarity=0.084 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccC-CCC---
Q 001196 241 CLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWD-HKI--- 316 (1125)
Q Consensus 241 ~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d-~~I--- 316 (1125)
...+..|++||.-.|+=.. ..+...+.+|...+.. +-..+|..|.++|.-|...|+ ..+
T Consensus 41 ~~vR~~al~cLGl~~Lld~-----~~a~~~l~l~~~~~~~------------~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 41 PAVRELALKCLGLCCLLDK-----ELAKEHLPLFLQALQK------------DDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 3557788888888775433 2334456666655422 235688899999988887542 111
Q ss_pred -------CHHHH-HHHhhcccCCchhHHHHHHHHHHHhHhcCCCc--hhHHHHHHhhhcCCCCchhHHHHHHHHHHHHHH
Q 001196 317 -------PVDVF-HLTLRTPEISFPQAKKLFLSKVHQYVKDRLLD--AKYACAFLFGITESKSPEFEEEKQNLADIIQMH 386 (1125)
Q Consensus 317 -------tp~~F-~~La~lvQD~~~eVR~~Fl~KL~k~L~~~~Lp--~RF~alffL~A~e~~epe~~~~K~~L~~~I~~~ 386 (1125)
....+ ..+...+.+..++||-..+.=+.|.|..+++. ..-++-+++..|.|.-.+...++|+|.-++..|
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence 11222 23345666778999999999999999999985 588887777778775555456777777777654
Q ss_pred HHHHHhhhccccccccccccchhhHHHHHhhhcCC
Q 001196 387 HQMKARQISVQSDANSFATYPEYIIPYLVHTFAHH 421 (1125)
Q Consensus 387 ~~sr~R~~s~~s~~~~~~~~pEyvLpyLIHLLAHH 421 (1125)
. ...... +..++.++.-.+..++..
T Consensus 184 ~----~s~~~~------Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 184 A----SSSPEN------QERLAEAFLPTLRTLSNA 208 (298)
T ss_pred H----cCCHHH------HHHHHHHHHHHHHHHHhC
Confidence 2 211111 234555555555556555
No 29
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.13 E-value=63 Score=41.51 Aligned_cols=153 Identities=15% Similarity=0.166 Sum_probs=85.7
Q ss_pred HHHHHHHHhhcCC-hHHHHHHHHHHHhhcCCCc-cchHHHHHHHHHHhhhcCC---CCchHHHHHHHHHhh-ccccccch
Q 001196 134 VDLLLERLCLEGS-RRQAKYAVHALAAITKDDG-LKSLSVLYKRLVDMLEEKT---HLPAVLQSLGCIAQT-AMPVFETR 207 (1125)
Q Consensus 134 l~~~L~~lAleGT-PrqAKyAVr~LaAls~d~~-~~~ls~L~e~Lv~~Le~~s---~l~T~L~aLgqIA~~-aP~vfe~~ 207 (1125)
.+....--++.|+ |+.+--|..|+++++.-.= ...-.+|+..++.+..... +=-+.|.+||-|.+. .|.+..++
T Consensus 90 qVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~ 169 (859)
T KOG1241|consen 90 QVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQ 169 (859)
T ss_pred HHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 3333333444443 5555666666665553210 0123567888887754432 236689999999875 48888888
Q ss_pred hHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCc
Q 001196 208 ESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDI 287 (1125)
Q Consensus 208 ~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~ 287 (1125)
++.|..-|+.-.....+ ....++.|+++|-|.|-=.+..- .-...+ +.+... .++-+
T Consensus 170 sN~iLtaIv~gmrk~e~---------------s~~vRLaa~~aL~nsLef~~~nF-~~E~er--n~iMqv-----vcEat 226 (859)
T KOG1241|consen 170 SNDILTAIVQGMRKEET---------------SAAVRLAALNALYNSLEFTKANF-NNEMER--NYIMQV-----VCEAT 226 (859)
T ss_pred HhHHHHHHHhhccccCC---------------chhHHHHHHHHHHHHHHHHHHhh-ccHhhh--ceeeee-----eeecc
Confidence 98888777754433221 12347889999999883222100 000000 011100 01111
Q ss_pred CCChhhHhhHHHHHHHHHHhhhccc
Q 001196 288 ESSSVDKAHLRLASAKAVLRLSRQW 312 (1125)
Q Consensus 288 ~tp~~~kArLRLaAa~sLLKLAr~~ 312 (1125)
. ..-.++|-+|-.||.||...|
T Consensus 227 q---~~d~~i~~aa~~ClvkIm~Ly 248 (859)
T KOG1241|consen 227 Q---SPDEEIQVAAFQCLVKIMSLY 248 (859)
T ss_pred c---CCcHHHHHHHHHHHHHHHHHH
Confidence 1 223579999999999999754
No 30
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.07 E-value=71 Score=39.32 Aligned_cols=237 Identities=14% Similarity=0.114 Sum_probs=130.3
Q ss_pred HHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhc--ccChhHHHHHHHHhhc-CChHHHHH
Q 001196 76 MDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLA--ATSSSVDLLLERLCLE-GSRRQAKY 152 (1125)
Q Consensus 76 leLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~--~~~s~l~~~L~~lAle-GTPrqAKy 152 (1125)
+..-..+.+..|...+.+...|+.++.. ..++.++..+..+..+++++- ....-.+..|.++|-. +.+.--+.
T Consensus 143 ~~~~~al~~~~~~pc~~~tatl~cl~lq----sa~e~~~~~sde~~~~w~qls~~~~h~~g~trlqr~m~~~~~~~~~~i 218 (533)
T KOG2032|consen 143 LEDVIALLKSLVAPCHSCTATLCCLILQ----SAEEAIQAVSDEVSRRWSQLSDNDIHRVGLTRLQRFMACVQDLEMGKI 218 (533)
T ss_pred HHhHHHHHHhhhhHHHHhHHHHHHHHHH----HhHHHHHHhhhcccchhhhcccCcccHHHHHHHHHHHHhhCCccHHHH
Confidence 3444456677777778888888777665 355677888887777666542 3455677777776653 33222222
Q ss_pred HHHHHHh------------------hcCCCcc---chHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccchhH
Q 001196 153 AVHALAA------------------ITKDDGL---KSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRES 209 (1125)
Q Consensus 153 AVr~LaA------------------ls~d~~~---~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~ 209 (1125)
-.+.+.. +...... ..+...+..+......-+ -=--.+..||-.|..+|+..-+|..
T Consensus 219 l~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~ 298 (533)
T KOG2032|consen 219 LAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT 298 (533)
T ss_pred HhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH
Confidence 2222211 1111110 112222222222222111 1112345566777778999999999
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCC
Q 001196 210 EIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIES 289 (1125)
Q Consensus 210 eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~t 289 (1125)
.+..-||..|.-.+. .+++ +.||++|+.-+--..+.+..+..-.+---|+++.
T Consensus 299 ~~ldaii~gL~D~~~--------------~~V~--leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~----------- 351 (533)
T KOG2032|consen 299 TQLDAIIRGLYDDLN--------------EEVQ--LEAMKCLTMVLEKASNDDLESYLLNIALRLRTLF----------- 351 (533)
T ss_pred HHHHHHHHHHhcCCc--------------cHHH--HHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHH-----------
Confidence 999888887764322 2222 4578877766644444444444333322333332
Q ss_pred ChhhHhhHHHHHHH---HHHhhhcc-cCCCCCHHH---HHHHhhcccCCchhHHHHHHHHHH
Q 001196 290 SSVDKAHLRLASAK---AVLRLSRQ-WDHKIPVDV---FHLTLRTPEISFPQAKKLFLSKVH 344 (1125)
Q Consensus 290 p~~~kArLRLaAa~---sLLKLAr~-~d~~Itp~~---F~~La~lvQD~~~eVR~~Fl~KL~ 344 (1125)
..+...+|.+|-- .|.++|.. |..+++-+. +..+..-+||+.|.|=+.|-.-+.
T Consensus 352 -~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 352 -DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred -HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 1234456666543 46677754 666666332 344557789999999888754443
No 31
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.88 E-value=22 Score=42.07 Aligned_cols=212 Identities=18% Similarity=0.191 Sum_probs=113.0
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHhccc--hhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchH
Q 001196 92 GTEEELVNLLKEENEIIKEGILHVLAKAGGT--IREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSL 169 (1125)
Q Consensus 92 ~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~--i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~l 169 (1125)
+-+.-|++++...|..+-+-+..+++.++-. -+..++....++++.|..+--.|+++.-=+|.-+|--++.+.+ +.
T Consensus 208 G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~--Yq 285 (550)
T KOG4224|consen 208 GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE--YQ 285 (550)
T ss_pred CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch--hh
Confidence 3467888999888888888888888877522 1223455566799999999999998653344444433333322 22
Q ss_pred HHHHH-----HHHHhhhcCCCCchHHHHHHHHHhhccccccchhHHHH-----HHHHHhhhcccCCCCCCCCCCCCCCcH
Q 001196 170 SVLYK-----RLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIE-----EFIKSKILRCSNKIRNDTKACWDDRSE 239 (1125)
Q Consensus 170 s~L~e-----~Lv~~Le~~s~l~T~L~aLgqIA~~aP~vfe~~~~eI~-----~fIiK~LLl~~~~~~~~~~~eW~~~Se 239 (1125)
.++++ .+++-| .....+-.|++.+||--++-+-... .-|. +-++ .||.. .+.+
T Consensus 286 ~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrnisihplNe--~lI~dagfl~pLV-rlL~~-------------~dnE 348 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELL-QSPMGPLILASVACIRNISIHPLNE--VLIADAGFLRPLV-RLLRA-------------GDNE 348 (550)
T ss_pred hHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhcccccCcc--cceecccchhHHH-HHHhc-------------CCch
Confidence 23222 222322 3347788999999995544322211 1111 1122 23332 1222
Q ss_pred HHHHHHHHHHHHHHhhcCCcc---ccccc-chHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhccc-CC
Q 001196 240 LCLLKIYGIKTLVKSYLPVKD---AHIRP-GIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW-DH 314 (1125)
Q Consensus 240 ~~~aKI~ALK~LvN~Lla~~~---~~~~~-~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~-d~ 314 (1125)
+ +|+.|.-+|-|-.-+..- ....+ ++.++..|| .+| |-..++ |+.|+.++|-|+-.. ..
T Consensus 349 e--iqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~----lD~--------pvsvqs--eisac~a~Lal~d~~k~~ 412 (550)
T KOG4224|consen 349 E--IQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELL----LDG--------PVSVQS--EISACIAQLALNDNDKEA 412 (550)
T ss_pred h--hhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHH----hcC--------ChhHHH--HHHHHHHHHHhccccHHH
Confidence 2 356777776664432221 11111 233334433 344 222343 678899999998653 22
Q ss_pred CCCHHHHHHHhhcccCCchhHHHH
Q 001196 315 KIPVDVFHLTLRTPEISFPQAKKL 338 (1125)
Q Consensus 315 ~Itp~~F~~La~lvQD~~~eVR~~ 338 (1125)
+...-....|+-+.-+++.+||--
T Consensus 413 lld~gi~~iLIp~t~s~s~Ev~gN 436 (550)
T KOG4224|consen 413 LLDSGIIPILIPWTGSESEEVRGN 436 (550)
T ss_pred HhhcCCcceeecccCccchhhccc
Confidence 222222333444556677777643
No 32
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=84.78 E-value=4.6 Score=56.60 Aligned_cols=150 Identities=21% Similarity=0.189 Sum_probs=92.8
Q ss_pred ccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCc--Cc---cccHHHHHHHHhhccchhHHHHHHHHHHhcc
Q 001196 47 LFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPL--LL---GGTEEELVNLLKEENEIIKEGILHVLAKAGG 121 (1125)
Q Consensus 47 ifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~--LF---k~~v~~L~~lL~d~n~~vve~aLkaLAk~gk 121 (1125)
++....|+-|+..+... ......+.|..|........+. ++ .+.+..|+++|...+..+++.+|.+|+.+..
T Consensus 647 vv~agaIpPLV~LLss~---~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 647 LATDEIINPCIKLLTNN---TEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred HHHcCCHHHHHHHHhcC---ChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence 44455677777755432 2222334455555555433333 12 3457999999999888899999999998754
Q ss_pred chhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc-chH------HHHHHHHHHhhhcCC--CCch--HH
Q 001196 122 TIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL-KSL------SVLYKRLVDMLEEKT--HLPA--VL 190 (1125)
Q Consensus 122 ~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~-~~l------s~L~e~Lv~~Le~~s--~l~T--~L 190 (1125)
.-...........++.|.++-.+|+++.=++|+.+|..++..... ..+ ...+..|++.|...+ ...+ .|
T Consensus 724 ~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al 803 (2102)
T PLN03200 724 DPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEAL 803 (2102)
T ss_pred CchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHH
Confidence 311111112345689999999999999999999999777654321 001 123555666665443 3343 66
Q ss_pred HHHHHHHhh
Q 001196 191 QSLGCIAQT 199 (1125)
Q Consensus 191 ~aLgqIA~~ 199 (1125)
.+|+-+++.
T Consensus 804 ~~l~~l~~~ 812 (2102)
T PLN03200 804 EALALLART 812 (2102)
T ss_pred HHHHHHHhh
Confidence 667666664
No 33
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=84.71 E-value=30 Score=40.09 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=56.8
Q ss_pred HHHHHHhhccchhHHHHHHHHHHhc--cchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCC--CccchHHH
Q 001196 96 ELVNLLKEENEIIKEGILHVLAKAG--GTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKD--DGLKSLSV 171 (1125)
Q Consensus 96 ~L~~lL~d~n~~vve~aLkaLAk~g--k~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d--~~~~~ls~ 171 (1125)
+.+..|.+.....-+.+|..|.++- +.+++........+...|.+....|++.+.-.|.++|+.++-. .+. ...+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~-~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE-DSEE 125 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc-cHHH
Confidence 3444455555556667777766542 2233333223345677777888889988888998886533222 111 1234
Q ss_pred HHHHHHHh----hhcCC-C--C-chHHHHHHHHHhhccc
Q 001196 172 LYKRLVDM----LEEKT-H--L-PAVLQSLGCIAQTAMP 202 (1125)
Q Consensus 172 L~e~Lv~~----Le~~s-~--l-~T~L~aLgqIA~~aP~ 202 (1125)
+|+.+.+. +..++ . . .+.+.+||-++-+.-.
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~ 164 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGS 164 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC
Confidence 44444444 44444 2 2 2345566666555443
No 34
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=84.59 E-value=20 Score=37.78 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhH-HHHHHHHhhcCChHHHH
Q 001196 73 QSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSV-DLLLERLCLEGSRRQAK 151 (1125)
Q Consensus 73 ~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l-~~~L~~lAleGTPrqAK 151 (1125)
..+.-.|..+...||.+...+...|...|.++++.+-..+|.+|++.. .+........+ ...|.-+ .--+|.-..
T Consensus 6 ~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li---~~d~ik~k~~l~~~~l~~l-~D~~~~Ir~ 81 (178)
T PF12717_consen 6 NNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLI---LEDMIKVKGQLFSRILKLL-VDENPEIRS 81 (178)
T ss_pred HHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHH---HcCceeehhhhhHHHHHHH-cCCCHHHHH
Confidence 457788889999999999999999999999999999999999999873 22233233333 4555322 344577777
Q ss_pred HHHHHHHhhcCC
Q 001196 152 YAVHALAAITKD 163 (1125)
Q Consensus 152 yAVr~LaAls~d 163 (1125)
.|..+|.-+...
T Consensus 82 ~A~~~~~e~~~~ 93 (178)
T PF12717_consen 82 LARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHh
Confidence 777777655554
No 35
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.50 E-value=25 Score=45.03 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhhCCcCccccHHHHHHHHhhccch-hHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHH
Q 001196 73 QSCMDILGILARFSPLLLGGTEEELVNLLKEENEI-IKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAK 151 (1125)
Q Consensus 73 ~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~-vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAK 151 (1125)
...+.-...||...|.||..|.+.+. +...|+. +.-.=|++|+..+.. ..-+.+..-|+.|...-...-|-
T Consensus 339 yvvL~nIa~~s~~~~~lF~P~lKsFf--v~ssDp~~vk~lKleiLs~La~e------sni~~ILrE~q~YI~s~d~~faa 410 (968)
T KOG1060|consen 339 YVVLQNIATISIKRPTLFEPHLKSFF--VRSSDPTQVKILKLEILSNLANE------SNISEILRELQTYIKSSDRSFAA 410 (968)
T ss_pred hhhHHHHHHHHhcchhhhhhhhhceE--eecCCHHHHHHHHHHHHHHHhhh------ccHHHHHHHHHHHHhcCchhHHH
Confidence 45666677888999999999976653 3334442 233346677765421 12234555567777666666777
Q ss_pred HHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhcc
Q 001196 152 YAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAM 201 (1125)
Q Consensus 152 yAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP 201 (1125)
.||.+|..++..-.. ...-.+..|+..|...+ -+.....+|--+.+..|
T Consensus 411 ~aV~AiGrCA~~~~s-v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 411 AAVKAIGRCASRIGS-VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred HHHHHHHHHHHhhCc-hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 888888865554332 11223444444444333 33334444444444444
No 36
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=84.43 E-value=71 Score=40.02 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=71.0
Q ss_pred HHHHHHHhhccchhHH-HHHHHHH----HhccchhhhhcccChhHHHHHHHHhhcCC--hHHHHHHHHHHHhhcCCCccc
Q 001196 95 EELVNLLKEENEIIKE-GILHVLA----KAGGTIREQLAATSSSVDLLLERLCLEGS--RRQAKYAVHALAAITKDDGLK 167 (1125)
Q Consensus 95 ~~L~~lL~d~n~~vve-~aLkaLA----k~gk~i~e~~~~~~s~l~~~L~~lAleGT--PrqAKyAVr~LaAls~d~~~~ 167 (1125)
..|.+.+.+.+..... .++.++- +.|+.+ .+-+-..|-.+|.++.-.+. +..|..|+++|+.....-+
T Consensus 177 ~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~---EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a-- 251 (569)
T KOG1242|consen 177 DNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF---EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA-- 251 (569)
T ss_pred HHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC---CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch--
Confidence 5666666665544333 2333333 233221 22234456666666644432 5667999999986665433
Q ss_pred hHHHHHHHHHHhhhcC-C-CCchHHHHHHHHHhhccccccchhHHHHHHHH
Q 001196 168 SLSVLYKRLVDMLEEK-T-HLPAVLQSLGCIAQTAMPVFETRESEIEEFIK 216 (1125)
Q Consensus 168 ~ls~L~e~Lv~~Le~~-s-~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIi 216 (1125)
...++-.++..+... . -=.+.|+.||+++..+|.+.+.....|+.-++
T Consensus 252 -VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~ls 301 (569)
T KOG1242|consen 252 -VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLS 301 (569)
T ss_pred -hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHH
Confidence 345566666665544 2 34567999999999999999877777776654
No 37
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.02 E-value=2e+02 Score=40.05 Aligned_cols=239 Identities=17% Similarity=0.180 Sum_probs=128.4
Q ss_pred HhcccccCHHHHHHHHHHHHhcc-------------CcchhhhHHHHHHHHHHHHhhCCcCcc-ccHHHHHHHHhhc---
Q 001196 42 KCSYLLFNKEHVKEILLEVAAQK-------------SSANAQFMQSCMDILGILARFSPLLLG-GTEEELVNLLKEE--- 104 (1125)
Q Consensus 42 RsS~lifNkShV~~LL~~vs~~~-------------s~~~~~~~~~AleLL~~IS~~~P~LFk-~~v~~L~~lL~d~--- 104 (1125)
..|.-.++.+.|...++.+..+. .+....-.-.++..|-.+|.+.|.+|. .|+..|-=.|...
T Consensus 1011 ~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t 1090 (1692)
T KOG1020|consen 1011 KESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKAST 1090 (1692)
T ss_pred hhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccc
Confidence 45566666776666666543211 112234456789999999999999999 9998887666653
Q ss_pred --cchhHHHHHHHHHHhccchhhhhcccChhHHHHHH-----HHhhcCChHHHHHHHHHHHhhcCC--CccchHHHHHHH
Q 001196 105 --NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLE-----RLCLEGSRRQAKYAVHALAAITKD--DGLKSLSVLYKR 175 (1125)
Q Consensus 105 --n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~-----~lAleGTPrqAKyAVr~LaAls~d--~~~~~ls~L~e~ 175 (1125)
...+...++++|-..-+-++ .....|...|+ .+...|.. ..-+||.||++++.. .+...+..++..
T Consensus 1091 ~~~~~fl~~vi~Ile~VlPlv~----~~sesfL~sLEe~L~~~i~k~g~a-~V~~~vsCl~sl~~k~~~~~~~v~~cf~~ 1165 (1692)
T KOG1020|consen 1091 IEEAQFLYYVIQILECVLPLVA----NPSESFLASLEEDLLKRIVKMGMA-TVVEAVSCLGSLATKRTDGAKVVKACFSC 1165 (1692)
T ss_pred hHHHHHHHHHHHHHHHHhhhhc----cchHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 22334455555554322111 11223333332 34444544 455999999999884 454455666666
Q ss_pred HHHhhhcC------C----CCch---HHHHHHHHHhhc-ccc-------ccchhHHHHHHHHHhhhcccCCCCCCCCCCC
Q 001196 176 LVDMLEEK------T----HLPA---VLQSLGCIAQTA-MPV-------FETRESEIEEFIKSKILRCSNKIRNDTKACW 234 (1125)
Q Consensus 176 Lv~~Le~~------s----~l~T---~L~aLgqIA~~a-P~v-------fe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW 234 (1125)
....|+.- . +++. .|=+||-+.++. -.. |++....+.+-++.-++--.+
T Consensus 1166 ~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k---------- 1235 (1692)
T KOG1020|consen 1166 YLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSK---------- 1235 (1692)
T ss_pred HHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHH----------
Confidence 66666641 1 3333 344556666633 111 111222344444432221111
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhh
Q 001196 235 DDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLS 309 (1125)
Q Consensus 235 ~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLA 309 (1125)
+ ..-..+.-||.-|...|..+..=...+ .+..++..+++.- ..+ .+.++-|.++..++=++
T Consensus 1236 --~-~~~~lR~~al~~Lg~~ci~hp~l~~~~---~v~nly~~ila~~------n~~--~~~ki~~l~n~~~yL~e 1296 (1692)
T KOG1020|consen 1236 --D-KDGELRRKALINLGFICIQHPSLFTSR---EVLNLYDEILADD------NSD--IKSKIQLLQNLELYLLE 1296 (1692)
T ss_pred --h-hhhHHHHHHHHHHHHHHhhCchhhhhH---HHHHHHHHHHhhh------ccc--HHHHHHHHHHHHHHHHH
Confidence 0 113457889999999998766422112 2556666665221 111 22555555555555444
No 38
>PRK09687 putative lyase; Provisional
Probab=83.93 E-value=85 Score=35.84 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=105.8
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHH
Q 001196 94 EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLY 173 (1125)
Q Consensus 94 v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~ 173 (1125)
++.|..+|.+.|..+...++.+|..++. ......|.++|...+|..=.+|+.+|..+...... ....+
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~~~a~ 92 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--QDNVF 92 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--hHHHH
Confidence 5889999999888888888888887763 34566678889999999999999999965433211 12234
Q ss_pred HHHHHhh-hcCC-C-CchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 001196 174 KRLVDML-EEKT-H-LPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKT 250 (1125)
Q Consensus 174 e~Lv~~L-e~~s-~-l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~ 250 (1125)
.-|...+ ++.+ . -.+.+.+||.+....+ ......+..++ .++.+ . ....+..++..
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~---~~~~~a~~~l~---~~~~D-------------~--~~~VR~~a~~a 151 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKNP---LYSPKIVEQSQ---ITAFD-------------K--STNVRFAVAFA 151 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccccccc---ccchHHHHHHH---HHhhC-------------C--CHHHHHHHHHH
Confidence 4444432 2333 2 2355666776643221 11111111110 00110 0 11223344444
Q ss_pred HHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHhhcccC
Q 001196 251 LVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEI 330 (1125)
Q Consensus 251 LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lvQD 330 (1125)
|.+ +.+ ...+ ..|..++... . . .+|..|+.+|=++. + -++...-.|..+++|
T Consensus 152 Lg~----~~~---~~ai----~~L~~~L~d~--------~-~---~VR~~A~~aLg~~~--~---~~~~~~~~L~~~L~D 203 (280)
T PRK09687 152 LSV----IND---EAAI----PLLINLLKDP--------N-G---DVRNWAAFALNSNK--Y---DNPDIREAFVAMLQD 203 (280)
T ss_pred Hhc----cCC---HHHH----HHHHHHhcCC--------C-H---HHHHHHHHHHhcCC--C---CCHHHHHHHHHHhcC
Confidence 421 111 1233 4444433111 1 1 49999999998882 1 134455556677799
Q ss_pred CchhHHHHHHHHHH
Q 001196 331 SFPQAKKLFLSKVH 344 (1125)
Q Consensus 331 ~~~eVR~~Fl~KL~ 344 (1125)
+..+||..=+.-|-
T Consensus 204 ~~~~VR~~A~~aLg 217 (280)
T PRK09687 204 KNEEIRIEAIIGLA 217 (280)
T ss_pred CChHHHHHHHHHHH
Confidence 99999988655553
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=83.79 E-value=6.1 Score=37.02 Aligned_cols=105 Identities=17% Similarity=0.114 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCcc-----ccHHHHHHHHhhccchhHHHHHHHHHHhccchhhh
Q 001196 52 HVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLG-----GTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ 126 (1125)
Q Consensus 52 hV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk-----~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~ 126 (1125)
-|+.|++.+... +......+...|..++...|.... +-++.|+++|.+.++.+...++.+|+++....+..
T Consensus 8 ~i~~l~~~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 8 GLPALVSLLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred ChHHHHHHHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 355566644321 234556777788888776544433 34588889999888889999999999886443211
Q ss_pred h-cccChhHHHHHHHHhhcCChHHHHHHHHHHHhh
Q 001196 127 L-AATSSSVDLLLERLCLEGSRRQAKYAVHALAAI 160 (1125)
Q Consensus 127 ~-~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAl 160 (1125)
. ......+.+.|.++...++..-.++|..+|..+
T Consensus 84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 1 112344677777777777777777777776643
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=82.87 E-value=1.3e+02 Score=37.17 Aligned_cols=169 Identities=17% Similarity=0.119 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHHHhh-CCcC-ccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhh-hcccChhHHHHHHHHhhcCC
Q 001196 70 QFMQSCMDILGILARF-SPLL-LGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-LAATSSSVDLLLERLCLEGS 146 (1125)
Q Consensus 70 ~~~~~AleLL~~IS~~-~P~L-Fk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~-~~~~~s~l~~~L~~lAleGT 146 (1125)
.....+.++|..+-.. .|.- +..+...|...|.+.++.|...+|+.|.++...-... ....+..++..+...-..+.
T Consensus 53 e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d 132 (503)
T PF10508_consen 53 EQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD 132 (503)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc
Confidence 3445566666655443 3333 4555677888888888888999999888764332111 11234556666666555677
Q ss_pred hHHHHHHHHHHHhhcCCCccchHHHH-----HHHHHHhhhc-CC-CCchHHHHHHHHHhhccccccch-hHHHHHHHHHh
Q 001196 147 RRQAKYAVHALAAITKDDGLKSLSVL-----YKRLVDMLEE-KT-HLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSK 218 (1125)
Q Consensus 147 PrqAKyAVr~LaAls~d~~~~~ls~L-----~e~Lv~~Le~-~s-~l~T~L~aLgqIA~~aP~vfe~~-~~eI~~fIiK~ 218 (1125)
..-|+.|+++|..++.... .+..| +..|...+.. ++ .-.-++..+..|+...|..++.. ...|...+++.
T Consensus 133 ~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~e 210 (503)
T PF10508_consen 133 LSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKE 210 (503)
T ss_pred HHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHH
Confidence 8889999999998887644 23344 4555554444 33 33457888888888889888653 33455555543
Q ss_pred hhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcC
Q 001196 219 ILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLP 257 (1125)
Q Consensus 219 LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla 257 (1125)
|- ++..+.|+-++-+|+.-...
T Consensus 211 L~-----------------~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 211 LD-----------------SDDILVQLNALELLSELAET 232 (503)
T ss_pred hc-----------------CccHHHHHHHHHHHHHHHcC
Confidence 32 13456678899998887763
No 41
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=82.08 E-value=79 Score=41.66 Aligned_cols=245 Identities=18% Similarity=0.198 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhh-ccc-----hhHHHHHHHHHHh-ccch
Q 001196 51 EHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKE-ENE-----IIKEGILHVLAKA-GGTI 123 (1125)
Q Consensus 51 ShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d-~n~-----~vve~aLkaLAk~-gk~i 123 (1125)
..++.|++.+.+..+.+-......|..+|..+..+.|..+..|+..|+--|.. =++ ...-.+|--|+.+ ...=
T Consensus 431 ~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~ 510 (1233)
T KOG1824|consen 431 DQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHP 510 (1233)
T ss_pred hhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCC
Confidence 34566666565544444344668899999999999999999999777644433 111 1233344444432 1111
Q ss_pred hhhhcccChhHHHHHHHHhhcCChHHHHHHH-------HHHHhhcC---CCccchHHHHHHHHHHhhhcCC-CCchHHHH
Q 001196 124 REQLAATSSSVDLLLERLCLEGSRRQAKYAV-------HALAAITK---DDGLKSLSVLYKRLVDMLEEKT-HLPAVLQS 192 (1125)
Q Consensus 124 ~e~~~~~~s~l~~~L~~lAleGTPrqAKyAV-------r~LaAls~---d~~~~~ls~L~e~Lv~~Le~~s-~l~T~L~a 192 (1125)
++.+-+.-+.+.+.+..-.-+.-++-+--|. +.|--+.+ -....++..++...+..|.... ..--...+
T Consensus 511 p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkera 590 (1233)
T KOG1824|consen 511 PEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERA 590 (1233)
T ss_pred hhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHH
Confidence 2334344444444443322222233332332 22221222 1223467788888888888775 66667777
Q ss_pred HHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHH
Q 001196 193 LGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLG 272 (1125)
Q Consensus 193 LgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llk 272 (1125)
++|+.++--...+.-..++-.-+. ||+. +-.. + ..++.|+|.++-...+.-.-...+....++.
T Consensus 591 Iscmgq~i~~fgD~l~~eL~~~L~--il~e-Rl~n-----------E--iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~ 654 (1233)
T KOG1824|consen 591 ISCMGQIIANFGDFLGNELPRTLP--ILLE-RLGN-----------E--ITRLTAVKALTLIAMSPLDIDLSPVLTEILP 654 (1233)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHH--HHHH-HHhc-----------h--hHHHHHHHHHHHHHhccceeehhhhHHHHHH
Confidence 887777655444333444333321 1111 1000 0 1246688887776654433222344444555
Q ss_pred HHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHH
Q 001196 273 ILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHL 323 (1125)
Q Consensus 273 LL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~ 323 (1125)
.|..++ .-..--||++--.++.+|...|...|++..+..
T Consensus 655 ~l~~fl------------rK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~ 693 (1233)
T KOG1824|consen 655 ELASFL------------RKNQRALRLATLTALDKLVKNYSDSIPAELLEA 693 (1233)
T ss_pred HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 554443 123445888888899999988877777765544
No 42
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=81.94 E-value=13 Score=40.06 Aligned_cols=137 Identities=18% Similarity=0.117 Sum_probs=78.3
Q ss_pred hccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHh----hccchhHHHHHHHHHHhccchhhhhcccChhH-HH
Q 001196 62 AQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLK----EENEIIKEGILHVLAKAGGTIREQLAATSSSV-DL 136 (1125)
Q Consensus 62 ~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~----d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l-~~ 136 (1125)
....+..+.....|+.+|..|+.....-|..+++.++..|. +.+..+.+.+..+|..+.... +....+ ..
T Consensus 60 ~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~-----~~~~~~~~~ 134 (228)
T PF12348_consen 60 KQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESC-----SYSPKILLE 134 (228)
T ss_dssp H-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHC-----CcHHHHHHH
Confidence 33334445677889999999999999999998766654443 345555666666666554332 112334 77
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhhcCCCc---c-----chHHHHHHHHHHhhhcCC-CC-chHHHHHHHHHhhcccc
Q 001196 137 LLERLCLEGSRRQAKYAVHALAAITKDDG---L-----KSLSVLYKRLVDMLEEKT-HL-PAVLQSLGCIAQTAMPV 203 (1125)
Q Consensus 137 ~L~~lAleGTPrqAKyAVr~LaAls~d~~---~-----~~ls~L~e~Lv~~Le~~s-~l-~T~L~aLgqIA~~aP~v 203 (1125)
.|...+...+|..-.+++.+|..+...-+ . ..+..++..|+..|.+.+ .. -+.-.++..+.+..|.-
T Consensus 135 ~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 135 ILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 88888888888887778877765554433 1 123567777777777665 22 23355555555555544
No 43
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=81.67 E-value=8.4 Score=41.47 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhhC-----CcCccccHH----HHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHh
Q 001196 72 MQSCMDILGILARFS-----PLLLGGTEE----ELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLC 142 (1125)
Q Consensus 72 ~~~AleLL~~IS~~~-----P~LFk~~v~----~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lA 142 (1125)
...|+.-|..+...+ |..|..++. .|+..+.+....++-.+|.+|..++..+...+.+....+++.|-+.+
T Consensus 24 r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~ 103 (228)
T PF12348_consen 24 RVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKL 103 (228)
T ss_dssp HHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 344566666665555 344444444 33344444555678888888887766665556666677888888888
Q ss_pred hcCChHHHHHHHHHHHhhcCCCccchHHHH-HHHHHHhhhcCC-CC-chHHHHHHHHHhhcc
Q 001196 143 LEGSRRQAKYAVHALAAITKDDGLKSLSVL-YKRLVDMLEEKT-HL-PAVLQSLGCIAQTAM 201 (1125)
Q Consensus 143 leGTPrqAKyAVr~LaAls~d~~~~~ls~L-~e~Lv~~Le~~s-~l-~T~L~aLgqIA~~aP 201 (1125)
-.++......|..||.++...-. +...+ +..+...+...+ .. ...+..|..+....|
T Consensus 104 ~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 104 GDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp G---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred ccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 88888788888888887776533 12333 444444444443 11 233445555555555
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=79.83 E-value=5.8 Score=37.19 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=52.8
Q ss_pred cHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcc-cChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCC
Q 001196 93 TEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA-TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 164 (1125)
Q Consensus 93 ~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~-~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~ 164 (1125)
-+..|+++|.+.+..+...++.+|..++...++.... ....+++.|..+-..++++...+|+.+|..++...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4678889999888788899999999876542222111 23356777777766788999999999999887764
No 45
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=79.61 E-value=20 Score=44.67 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHH
Q 001196 70 QFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQ 149 (1125)
Q Consensus 70 ~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrq 149 (1125)
..-.-|-.++--.-+.||.|=...+..+..+++|++..|-..+++.|-.+.+.-+ ..-+++..+|.++=....+.+
T Consensus 37 k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E 112 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVE 112 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHH
T ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHH
Confidence 4456678888899999999999999999999999988888888888888876432 234678889999888888888
Q ss_pred HHHHHHHHHhhcCCCccchHHHHHHHHH
Q 001196 150 AKYAVHALAAITKDDGLKSLSVLYKRLV 177 (1125)
Q Consensus 150 AKyAVr~LaAls~d~~~~~ls~L~e~Lv 177 (1125)
....-.+|+.+...+....+..|+..|.
T Consensus 113 ~~~v~~sL~~ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 113 LDAVKNSLMSLLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 7776677766665544456777777776
No 46
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=79.00 E-value=14 Score=48.11 Aligned_cols=213 Identities=12% Similarity=0.029 Sum_probs=109.1
Q ss_pred ChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC-----CC-chHHHHHHHHHhhccccc
Q 001196 131 SSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-----HL-PAVLQSLGCIAQTAMPVF 204 (1125)
Q Consensus 131 ~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s-----~l-~T~L~aLgqIA~~aP~vf 204 (1125)
...+..-+.+.|+.|.-.-++|-=-++. .+.+--..++ ..+..+.. ++.++ .+ .....++|-++++.|.
T Consensus 823 ~~~~~d~i~~~sl~~~e~~~~~iE~l~~-~c~d~i~~~~-~~~~~~~~-~~~~s~~~~~~l~~~y~v~~~~~~ql~P~-- 897 (1529)
T KOG0413|consen 823 LGKLMDGIGDRSLHGKEFSDFGIETLLI-KCFDTIVQSF-EMFKDKDE-WKRNSESQERLLCTAYNVAFSYSPQLVPH-- 897 (1529)
T ss_pred HHHHHHHHHHHHhhcccCchHHHhhHHH-hccceehhHH-hhhhhhHH-HhhcchhHHHHHHHHhhccccccceeccc--
Confidence 4456667777777776666665222211 1221111111 11222211 33332 12 2233345666666662
Q ss_pred cchhHHHHHHHHHhhhcccCCCCCCCCCCCC------CCcHHHH------HHHHHHHHHHHhhcCCcccccccchHHHHH
Q 001196 205 ETRESEIEEFIKSKILRCSNKIRNDTKACWD------DRSELCL------LKIYGIKTLVKSYLPVKDAHIRPGIDDLLG 272 (1125)
Q Consensus 205 e~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~------~~Se~~~------aKI~ALK~LvN~Lla~~~~~~~~~~~~llk 272 (1125)
.+-+.++.|+++-++..+++..-.....-. +.+..|. ....|+-+|++.|+++.. .+++++-
T Consensus 898 -ar~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g~~~~~~vra~~vvTlakmcLah~~-----LaKr~~P 971 (1529)
T KOG0413|consen 898 -ARLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEGAMFSDKVRAVGVVTLAKMCLAHDR-----LAKRLMP 971 (1529)
T ss_pred -hhccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccccccchHHHHHHHHHHHHHHhhhhH-----HHHHHHH
Confidence 235567788877776655443211110000 1122222 234677889999998763 3444555
Q ss_pred HHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHH-HhhcccCCchhHHHHHHHHHHHhHhcC-
Q 001196 273 ILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHL-TLRTPEISFPQAKKLFLSKVHQYVKDR- 350 (1125)
Q Consensus 273 LL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~-La~lvQD~~~eVR~~Fl~KL~k~L~~~- 350 (1125)
+|..-+ . ..+..-+|=..-.+|=-+|.+|-..+ +-|+- ++.-..|+|+-||+.=+.-|..+|+.+
T Consensus 972 ~lvkeL-----e------~~~~~aiRnNiV~am~D~C~~YTam~--d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~ 1038 (1529)
T KOG0413|consen 972 MLVKEL-----E------YNTAHAIRNNIVLAMGDICSSYTAMT--DRYIPMIAASLCDPSVIVRRQTIILLARLLQFGI 1038 (1529)
T ss_pred HHHHHH-----H------hhhHHHHhcceeeeehhhHHHHHHHH--HHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhh
Confidence 555422 1 12344455555555666776663333 22322 234568999999999999998888864
Q ss_pred -----CCchhHHHHHHhhhcCCCCch
Q 001196 351 -----LLDAKYACAFLFGITESKSPE 371 (1125)
Q Consensus 351 -----~Lp~RF~alffL~A~e~~epe 371 (1125)
.|=+|||.. .++.++..
T Consensus 1039 vKw~G~Lf~Rf~l~----l~D~~edI 1060 (1529)
T KOG0413|consen 1039 VKWNGELFIRFMLA----LLDANEDI 1060 (1529)
T ss_pred hhcchhhHHHHHHH----HcccCHHH
Confidence 344555533 34455544
No 47
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.18 E-value=25 Score=44.27 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChh-HHHHHHHHhhcCChHHH
Q 001196 72 MQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSS-VDLLLERLCLEGSRRQA 150 (1125)
Q Consensus 72 ~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~-l~~~L~~lAleGTPrqA 150 (1125)
...|-.-|-.++...|..-....+-|+.++.|+.+.|-..++.+|..++..+ .+.+. +..+| -|++.+-..+
T Consensus 390 R~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il--~~L~D~s~dv 462 (823)
T KOG2259|consen 390 RRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL-----AIREEQLRQIL--ESLEDRSVDV 462 (823)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-----eecHHHHHHHH--HHHHhcCHHH
Confidence 4567788999999999998888999999999987777777888888776542 12222 22223 2556677888
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC-CCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcc
Q 001196 151 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRC 222 (1125)
Q Consensus 151 KyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s-~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~ 222 (1125)
..|.+-|...+.-....++.-.+..+.+.|..-. .=...+.+++.|++.+|..|. ..+..|+-+.....
T Consensus 463 Re~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH~~lv~---s~m~rfl~kh~~f~ 532 (823)
T KOG2259|consen 463 REALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQNHRRLVL---SNMGRFLEKHTSFA 532 (823)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhccChhhHH---HHHHHHHHhccccc
Confidence 9999998877766666666666777777776433 567889999999999999884 34456654444333
No 48
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=77.49 E-value=24 Score=37.00 Aligned_cols=139 Identities=14% Similarity=0.171 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhC-CcCccccH----HHHHHHHhhccc-hhHHHHHHHHHHhccc
Q 001196 49 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS-PLLLGGTE----EELVNLLKEENE-IIKEGILHVLAKAGGT 122 (1125)
Q Consensus 49 NkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~-P~LFk~~v----~~L~~lL~d~n~-~vve~aLkaLAk~gk~ 122 (1125)
+++.+..+..++..--.+......-.+..|+..+...+ |.+|..|- ..|..+|...++ .+.+.++.+|+.+-..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 67888888888765333332334457889999999998 99996664 566666666433 4566777777765221
Q ss_pred hhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccc
Q 001196 123 IREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMP 202 (1125)
Q Consensus 123 i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s~l~T~L~aLgqIA~~aP~ 202 (1125)
+. +++...+ ++ .||.-.++...+|. +..+ .....+.|.+|..+-..+|.
T Consensus 99 ~~-~~p~l~R-------ei---~tp~l~~~i~~ll~-l~~~-------------------~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 99 IR-GKPTLTR-------EI---ATPNLPKFIQSLLQ-LLQD-------------------SSCPETALDALATLLPHHPT 147 (165)
T ss_pred hc-CCCchHH-------HH---hhccHHHHHHHHHH-HHhc-------------------cccHHHHHHHHHHHHHHCCc
Confidence 11 1111111 11 34555555555544 2221 11335679999999999999
Q ss_pred cccchhHHHHHHHHHh
Q 001196 203 VFETRESEIEEFIKSK 218 (1125)
Q Consensus 203 vfe~~~~eI~~fIiK~ 218 (1125)
.|-.+.+.|..+++.-
T Consensus 148 t~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 148 TFRPFANKIESALLSL 163 (165)
T ss_pred cccchHHHHHHHHHHH
Confidence 9999999999998753
No 49
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=77.03 E-value=65 Score=40.23 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=47.8
Q ss_pred chHHHHHHHHHhhcccc----------ccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhc
Q 001196 187 PAVLQSLGCIAQTAMPV----------FETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYL 256 (1125)
Q Consensus 187 ~T~L~aLgqIA~~aP~v----------fe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Ll 256 (1125)
.+.+-++|+++..+... ...-.+.++.++.+.+-..... ..-..++.+||.|.|-=.
T Consensus 453 ~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------------~~~~~~~~~LkaLgN~g~ 519 (618)
T PF01347_consen 453 ETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSR-------------GDEEEKIVYLKALGNLGH 519 (618)
T ss_dssp HHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHT-------------T-HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhc-------------cCHHHHHHHHHHhhccCC
Confidence 45677788887665444 2222444555554433311110 011346788888887542
Q ss_pred CCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhccc
Q 001196 257 PVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW 312 (1125)
Q Consensus 257 a~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~ 312 (1125)
+ .++..|..++ .|+. ..-.++|++|..+|-+++..+
T Consensus 520 ~-----------~~i~~l~~~i-~~~~--------~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 520 P-----------ESIPVLLPYI-EGKE--------EVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp G-----------GGHHHHHTTS-TTSS---------S-HHHHHHHHHTTTTGGGT-
T ss_pred c-----------hhhHHHHhHh-hhcc--------ccchHHHHHHHHHHHHHhhcC
Confidence 2 1234444433 1211 234589999999999887644
No 50
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=75.92 E-value=2.1e+02 Score=35.63 Aligned_cols=161 Identities=15% Similarity=0.153 Sum_probs=76.3
Q ss_pred HHHHHhhcC--ChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcC----C--CCchHHHHHHHHHhhccccccc-h
Q 001196 137 LLERLCLEG--SRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEK----T--HLPAVLQSLGCIAQTAMPVFET-R 207 (1125)
Q Consensus 137 ~L~~lAleG--TPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~----s--~l~T~L~aLgqIA~~aP~vfe~-~ 207 (1125)
.+.++...| ++.+|-.++-.+......... ++++.+.+.+... . -..+.+-++|+++.....--.. +
T Consensus 361 ~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~----~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~ 436 (574)
T smart00638 361 FIKQWIKNKKITPLEAAQLLAVLPHTARYPTE----EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP 436 (574)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCH----HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 344444444 345555555555544433333 3444444434322 1 1245678888888743322211 1
Q ss_pred ---hHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCc
Q 001196 208 ---ESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 284 (1125)
Q Consensus 208 ---~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~ 284 (1125)
..++..++...|-...... +.+ -++..||.|.|-=.+ ..+..|..++. |+-
T Consensus 437 ~~~~~~~~~~l~~~l~~~~~~~----------~~~---~~~~~LkaLGN~g~~-----------~~i~~l~~~l~-~~~- 490 (574)
T smart00638 437 DFVLEELLKYLHELLQQAVSKG----------DEE---EIQLYLKALGNAGHP-----------SSIKVLEPYLE-GAE- 490 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHhcC----------Cch---heeeHHHhhhccCCh-----------hHHHHHHHhcC-CCC-
Confidence 2445555554443221110 001 135677776653211 12233333332 321
Q ss_pred CCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHhhcccCCchhHH
Q 001196 285 EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAK 336 (1125)
Q Consensus 285 ~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lvQD~~~eVR 336 (1125)
..-.++|++|..+|-++|......+.. .+..+ ++=..+.++||
T Consensus 491 -------~~~~~iR~~Av~Alr~~a~~~p~~v~~-~l~~i-~~n~~e~~EvR 533 (574)
T smart00638 491 -------PLSTFIRLAAILALRNLAKRDPRKVQE-VLLPI-YLNRAEPPEVR 533 (574)
T ss_pred -------CCCHHHHHHHHHHHHHHHHhCchHHHH-HHHHH-HcCCCCChHHH
Confidence 134689999999999998754444322 12222 34445566666
No 51
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=75.56 E-value=5.3 Score=35.92 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=27.2
Q ss_pred cCceEEEecCCC---CceEEEEEEEecCCCCeeEEEecC
Q 001196 827 IGYRIKVWWPMD---KQFYEGTIKSYDPIKKKHVILYDD 862 (1125)
Q Consensus 827 VG~rikV~WP~D---~~wY~G~V~~yd~~~~kH~V~YdD 862 (1125)
.|.+|.|+--.+ .+||.|+|....... +..|.|+|
T Consensus 3 ~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~-~~~V~Y~~ 40 (68)
T PF05641_consen 3 KGDEVEVSSDEDGFRGAWFPATVLKENGDD-KYLVEYDD 40 (68)
T ss_dssp TT-EEEEEE-SBTT--EEEEEEEEEEETT--EEEEEETT
T ss_pred CCCEEEEEEcCCCCCcEEEEEEEEEeCCCc-EEEEEECC
Confidence 688999987664 599999999999876 99999964
No 52
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=74.61 E-value=42 Score=37.91 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=64.6
Q ss_pred cHHHHHHHHhh-ccchhHHHHHHHHHHhccchhh-hhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc-chH
Q 001196 93 TEEELVNLLKE-ENEIIKEGILHVLAKAGGTIRE-QLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL-KSL 169 (1125)
Q Consensus 93 ~v~~L~~lL~d-~n~~vve~aLkaLAk~gk~i~e-~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~-~~l 169 (1125)
+.+.|+.+|.. .++.+.+.+|-++...+. ++. +..-.+..-+..+.++--.++|..-..|+.+|..++.+.+. ...
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 35888888886 566778888888887643 221 22223445677788888888888888899999877766542 123
Q ss_pred HHHHHHHHHhhhcCC-CCchHHHHHHHHHhh
Q 001196 170 SVLYKRLVDMLEEKT-HLPAVLQSLGCIAQT 199 (1125)
Q Consensus 170 s~L~e~Lv~~Le~~s-~l~T~L~aLgqIA~~ 199 (1125)
+..+..++..+-... +-.--+++|.-|.-+
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nL 122 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNL 122 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHcc
Confidence 334445544332221 333334555555544
No 53
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.34 E-value=2.7e+02 Score=36.02 Aligned_cols=275 Identities=15% Similarity=0.125 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccc-hhhhhcccChhHHHHHHHHhhcCChH-
Q 001196 71 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGT-IREQLAATSSSVDLLLERLCLEGSRR- 148 (1125)
Q Consensus 71 ~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~-i~e~~~~~~s~l~~~L~~lAleGTPr- 148 (1125)
.+.-...+|.. .+-.+.+--+..+.+-|...|+.-+-.+|+.++++|.. +.+. |..-+.++-..|+-.
T Consensus 93 IGYl~is~L~n---~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea-------~~~DI~KlLvS~~~~~ 162 (938)
T KOG1077|consen 93 IGYLFISLLLN---ENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEA-------FADDIPKLLVSGSSMD 162 (938)
T ss_pred HhHHHHHHHHh---cchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHH-------hhhhhHHHHhCCcchH
Confidence 33444455443 33344444445666666667887788899999999843 3332 333344566667532
Q ss_pred -HHHHHHHHHHhhcCCCc-cchHHHHHHHHHHhhhcCC-CC-chHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccC
Q 001196 149 -QAKYAVHALAAITKDDG-LKSLSVLYKRLVDMLEEKT-HL-PAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSN 224 (1125)
Q Consensus 149 -qAKyAVr~LaAls~d~~-~~~ls~L~e~Lv~~Le~~s-~l-~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~ 224 (1125)
.-|-|+-||.++..... ..--.+-+++|+.-|++.. ++ .+...-+-+|++.-|+.|.....--+.-+. .+.....
T Consensus 163 ~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~-riv~~~~ 241 (938)
T KOG1077|consen 163 YVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLS-RIVVVVG 241 (938)
T ss_pred HHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHH-HHHhhcc
Confidence 22455566666766533 2223356778888787776 44 444555677888889888764222111111 1111111
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHH
Q 001196 225 KIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKA 304 (1125)
Q Consensus 225 ~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~s 304 (1125)
++-.+...-.++.+ =.+.| .+++|-+. +..+ + .+.-..++++|..|++.-. -|+..+--.---|-.+
T Consensus 242 t~~qdYTyy~vP~P-WL~vK--l~rlLq~~--p~~~-D-~~~r~~l~evl~~iLnk~~------~~~~~k~vq~~na~na 308 (938)
T KOG1077|consen 242 TSLQDYTYYFVPAP-WLQVK--LLRLLQIY--PTPE-D-PSTRARLNEVLERILNKAQ------EPPKSKKVQHSNAKNA 308 (938)
T ss_pred cchhhceeecCCCh-HHHHH--HHHHHHhC--CCCC-C-chHHHHHHHHHHHHHhccc------cCccccchHhhhhHHH
Confidence 11011111111111 11112 33443333 2221 2 2223347788887774331 1111111111112222
Q ss_pred HHhhhcccCCCCCHHHHHHHhh-cccCCchhHHHHHHHHHHHhHhcCCCchhHHHHHHhhhcCCCCchhHHHHHHHHHHH
Q 001196 305 VLRLSRQWDHKIPVDVFHLTLR-TPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADII 383 (1125)
Q Consensus 305 LLKLAr~~d~~Itp~~F~~La~-lvQD~~~eVR~~Fl~KL~k~L~~~~Lp~RF~alffL~A~e~~epe~~~~K~~L~~~I 383 (1125)
+ .|-.+.+ +--|++++.=.+-++.|.+.|..+...+||+++=-++-.-..++.-+.+|.+...+|
T Consensus 309 V--------------LFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii 374 (938)
T KOG1077|consen 309 V--------------LFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTII 374 (938)
T ss_pred H--------------HHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHH
Confidence 2 2433332 335888888788889999999999999999994333211122444466777766665
No 54
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=73.29 E-value=14 Score=38.17 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=54.9
Q ss_pred cCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccchhHHHHHHHHHHhc
Q 001196 48 FNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAG 120 (1125)
Q Consensus 48 fNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~L~~lL~d-~n~~vve~aLkaLAk~g 120 (1125)
--+..+..|.+++.. .+....-.|+.||..+.+.|...|...+ ++|++++.. .+..|...+|..+-.|+
T Consensus 34 ~~k~a~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 34 GAKDCLKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred cHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 346677777776643 2345667799999999999999999875 666677766 56678888899888887
Q ss_pred cchh
Q 001196 121 GTIR 124 (1125)
Q Consensus 121 k~i~ 124 (1125)
..|+
T Consensus 110 ~~f~ 113 (144)
T cd03568 110 DEFK 113 (144)
T ss_pred HHhC
Confidence 6554
No 55
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.06 E-value=2.8e+02 Score=37.68 Aligned_cols=300 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred ehhccc-chhhHHHHHHHHHhcc-------------CCcHHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhH
Q 001196 7 WIDFVS-IYFPVLQDDLLKILGA-------------KHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFM 72 (1125)
Q Consensus 7 ~~~~~s-~~~~~ar~ELLKRLg~-------------k~~l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~ 72 (1125)
|.+.++ +|..++-.++.-.|.+ ....+..+-.++-..++..=+......+ ..+.........+.-
T Consensus 593 ~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQ 671 (1176)
T KOG1248|consen 593 VLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQ 671 (1176)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHH
Q ss_pred HHHHHHHHHHHhh--CCcCccccHHHHHHHHhh----ccchhHHHHHHHHHHhccchh-hhhcccChhHHHHHHHHhhcC
Q 001196 73 QSCMDILGILARF--SPLLLGGTEEELVNLLKE----ENEIIKEGILHVLAKAGGTIR-EQLAATSSSVDLLLERLCLEG 145 (1125)
Q Consensus 73 ~~AleLL~~IS~~--~P~LFk~~v~~L~~lL~d----~n~~vve~aLkaLAk~gk~i~-e~~~~~~s~l~~~L~~lAleG 145 (1125)
..+-+||..++.. .-.+-..+++.+.+.|.+ ......-..|++|..+-+..+ +....+.+.+.+++-.+ .+-
T Consensus 672 kK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~ 750 (1176)
T KOG1248|consen 672 KKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEV 750 (1176)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccc
Q ss_pred ChHHHHHHHHHHHhhc---------CCCccchHHHHHHHHHHhhhcCC-CCchH-HHHHHHHHhhccccccch-hHHHHH
Q 001196 146 SRRQAKYAVHALAAIT---------KDDGLKSLSVLYKRLVDMLEEKT-HLPAV-LQSLGCIAQTAMPVFETR-ESEIEE 213 (1125)
Q Consensus 146 TPrqAKyAVr~LaAls---------~d~~~~~ls~L~e~Lv~~Le~~s-~l~T~-L~aLgqIA~~aP~vfe~~-~~eI~~ 213 (1125)
+-..=+.|..||..++ .++....+++.+..|...|--.. +..+. |.++++|++-.-....+. -..+.+
T Consensus 751 n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~ 830 (1176)
T KOG1248|consen 751 NVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLIS 830 (1176)
T ss_pred cHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Q ss_pred HHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhh
Q 001196 214 FIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVD 293 (1125)
Q Consensus 214 fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~ 293 (1125)
+|.--|--..+ ..-..||.++.-.+.........+..+.++..|..+.+.+
T Consensus 831 ~V~~~L~s~sr-----------------eI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~------------ 881 (1176)
T KOG1248|consen 831 MVCLYLASNSR-----------------EIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH------------ 881 (1176)
T ss_pred HHHHHHhcCCH-----------------HHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh------------
Q ss_pred HhhHHHHHHHHHHhhhccc-----CCCCCHHHHHHHhhcccCCchhHHHHHHHH
Q 001196 294 KAHLRLASAKAVLRLSRQW-----DHKIPVDVFHLTLRTPEISFPQAKKLFLSK 342 (1125)
Q Consensus 294 kArLRLaAa~sLLKLAr~~-----d~~Itp~~F~~La~lvQD~~~eVR~~Fl~K 342 (1125)
+.++|.....-|=+|++.+ ..+++-++...|-++-- +|+++..|
T Consensus 882 k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK-----~r~R~~rK 930 (1176)
T KOG1248|consen 882 KIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRK-----RRRRKKRK 930 (1176)
T ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHH-----HHHHhhhh
No 56
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=71.32 E-value=1.1e+02 Score=41.30 Aligned_cols=98 Identities=14% Similarity=0.177 Sum_probs=63.0
Q ss_pred CCchHHHHHHHHHhhccccccc-hhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcc---
Q 001196 185 HLPAVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKD--- 260 (1125)
Q Consensus 185 ~l~T~L~aLgqIA~~aP~vfe~-~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~--- 260 (1125)
...+.|.+|.-|..+++-+-++ .-+-|+-|++. +++. ...+.++.||.+|+..|-.+.+
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~-l~~D----------------s~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVH-LLMD----------------SEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHH-HhcC----------------chHHHHHHHHHHHHHHHhhccCCCc
Confidence 3456788888888877777654 46778888874 3321 1234467899999988876664
Q ss_pred cccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhc
Q 001196 261 AHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSR 310 (1125)
Q Consensus 261 ~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr 310 (1125)
.++.-+.+-+|-.|..|+++. ...++|++-|.+|=.||.
T Consensus 499 ~daniF~eYlfP~L~~l~~d~-----------~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDS-----------SAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccC-----------ccceehhhHHhhHHHHHH
Confidence 233334455666776665221 345777777777777774
No 57
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.89 E-value=72 Score=41.55 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=111.5
Q ss_pred HhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccc--cHHHHHHHHhhccchhHHHHHHHHHHh
Q 001196 42 KCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGG--TEEELVNLLKEENEIIKEGILHVLAKA 119 (1125)
Q Consensus 42 RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~--~v~~L~~lL~d~n~~vve~aLkaLAk~ 119 (1125)
|++-..++--.||.|++++..- .--..++-+++-|..||+.+|.---. .+...+.+|.-=...+-..+|.|.|+.
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~ 321 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANC 321 (1051)
T ss_pred chhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777888888876431 11245677999999999999963322 233333333221112456788888998
Q ss_pred ccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc-------chHHHHHHHHHHhhhcCC------CC
Q 001196 120 GGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL-------KSLSVLYKRLVDMLEEKT------HL 186 (1125)
Q Consensus 120 gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~-------~~ls~L~e~Lv~~Le~~s------~l 186 (1125)
.+.|+.......-..+++|.++-.+-+.+-.-++.-|++.++..... .+-.+|++.+..-|.... -|
T Consensus 322 Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 322 CKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred HhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 88887443333334567788887777777777877787766654221 122345555555444331 45
Q ss_pred chHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCC
Q 001196 187 PAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNK 225 (1125)
Q Consensus 187 ~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~ 225 (1125)
...+-.|.-++--+|..|.+....=+..+++.||.....
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence 556666777777778888876433344456778876554
No 58
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=69.44 E-value=12 Score=35.44 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=40.8
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEe-cCCCceeeecCcceEEEe
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLDKERWELL 878 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~Y-dDGD~E~L~L~~Ek~~~~ 878 (1125)
....+|..+-+.=+.|..||.|.| ..+...+.-.|.| |-|..+.+... +++.+
T Consensus 50 ~~~~~~~~~~~~~~~~~~w~Ra~I-~~~~~~~~~~V~~iD~G~~~~v~~~--~l~~l 103 (121)
T PF00567_consen 50 PESNPGEGCLCVVSEDGRWYRAVI-TVDIDENQYKVFLIDYGNTEKVSAS--DLRPL 103 (121)
T ss_dssp ST--TTEEEEEEETTTSEEEEEEE-EEEECTTEEEEEETTTTEEEEEEGG--GEEE-
T ss_pred cccccCCEEEEEEecCCceeeEEE-EEecccceeEEEEEecCceEEEcHH--Hhhhh
Confidence 445588888888899999999999 7777788899999 99999987655 44444
No 59
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=69.00 E-value=2.7e+02 Score=36.23 Aligned_cols=139 Identities=23% Similarity=0.225 Sum_probs=84.0
Q ss_pred HHHHHhccCCc-HHHHHHHHHHHhcccccCHHHHHH--HHHHHHhccCcchhhhHHHHHHHHHHHHhhC---CcCcc-cc
Q 001196 21 DLLKILGAKHR-LYDFLSTLSMKCSYLLFNKEHVKE--ILLEVAAQKSSANAQFMQSCMDILGILARFS---PLLLG-GT 93 (1125)
Q Consensus 21 ELLKRLg~k~~-l~etlk~LL~RsS~lifNkShV~~--LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~---P~LFk-~~ 93 (1125)
-|++-|...+. ++-.+-.||.+.|..--|++.+.+ ++..+.+-...++......++++|..+|... +.+-. |.
T Consensus 294 ~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~Gl 373 (708)
T PF05804_consen 294 LLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGL 373 (708)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCC
Confidence 35555555554 666778899999998888887652 2222222112345567889999999998643 22222 23
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHhccc--hhhhhcccChhHHHHHHHHhhcCChH-HHHHHHHHHHhhcCC
Q 001196 94 EEELVNLLKEENEIIKEGILHVLAKAGGT--IREQLAATSSSVDLLLERLCLEGSRR-QAKYAVHALAAITKD 163 (1125)
Q Consensus 94 v~~L~~lL~d~n~~vve~aLkaLAk~gk~--i~e~~~~~~s~l~~~L~~lAleGTPr-qAKyAVr~LaAls~d 163 (1125)
+..|+.+|.+.+ ....+|.+||+++-. .+..+.. ..-++.|.++.+.++.. ...-++.++.-++.+
T Consensus 374 IPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~--TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 374 IPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAY--TDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred cHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhh--cchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 588999998654 345689999987632 1222332 23567777777776543 344444444434443
No 60
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=67.93 E-value=12 Score=37.84 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=36.1
Q ss_pred CceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeec
Q 001196 828 GYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRL 870 (1125)
Q Consensus 828 G~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L 870 (1125)
|.+|=..|+.|.-||.|+|..+- ..+...|.+++|+.+.+..
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~~v~~ 42 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQEVPI 42 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEEEeCh
Confidence 77888999999999999999998 6677888888888877643
No 61
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=67.73 E-value=2e+02 Score=31.86 Aligned_cols=167 Identities=16% Similarity=0.063 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhh------cc
Q 001196 32 LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKE------EN 105 (1125)
Q Consensus 32 l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d------~n 105 (1125)
...++..|=.-|..- | .+++.+++-+..-...........++++|..+-...|.+| +..+.++..+.. .+
T Consensus 18 ~~~~L~~L~~l~~~~--~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~ 93 (234)
T PF12530_consen 18 QLPLLEALPSLACHK--N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSS 93 (234)
T ss_pred HHHHHHHHHHHhccC--c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCC
Confidence 555555555555544 2 4455444433221111222234578999999999999999 555555444111 11
Q ss_pred chhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHh-hcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC
Q 001196 106 EIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLC-LEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT 184 (1125)
Q Consensus 106 ~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lA-leGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s 184 (1125)
.......+-++|..-+.+-...+...-.++..|..++ ....+..+-+|+.+|..+....-. .+.-....|.+.| ...
T Consensus 94 ~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vv-d~~s~w~vl~~~l-~~~ 171 (234)
T PF12530_consen 94 KDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVV-DFYSAWKVLQKKL-SLD 171 (234)
T ss_pred CcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHhc-CCc
Confidence 1112222222222222222222334456778888887 667777778999999988854332 3344566666666 223
Q ss_pred CCchHHHHHHHHHhhccccc
Q 001196 185 HLPAVLQSLGCIAQTAMPVF 204 (1125)
Q Consensus 185 ~l~T~L~aLgqIA~~aP~vf 204 (1125)
.-|..+.+|..++.+.|..-
T Consensus 172 ~rp~v~~~l~~l~~l~~~~~ 191 (234)
T PF12530_consen 172 YRPLVLKSLCSLFALVPQGA 191 (234)
T ss_pred cchHHHHHHHHHHHHhcccc
Confidence 67888888999998877654
No 62
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=67.47 E-value=23 Score=45.61 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHH
Q 001196 32 LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEG 111 (1125)
Q Consensus 32 l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~ 111 (1125)
--+.|+..+..- ..-+.+..|+-.|-+.....+...-.-.+--|..+++..|++-.=.+..+.+-|.+.|+.+--.
T Consensus 36 kidAmK~iIa~M----~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~ 111 (757)
T COG5096 36 KIDAMKKIIAQM----SLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGF 111 (757)
T ss_pred HHHHHHHHHHHH----hcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 345555555432 2233355555555443223344555667888999999999777777788888888899998889
Q ss_pred HHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHH-HHHHHHHhhhcCC--CCch
Q 001196 112 ILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSV-LYKRLVDMLEEKT--HLPA 188 (1125)
Q Consensus 112 aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~-L~e~Lv~~Le~~s--~l~T 188 (1125)
||++|.... .+ .+-.-++..+++.-..+.|-.=|.|+-||+.+..-+...+... ++.-+...+.+.+ -.++
T Consensus 112 AlR~ls~l~--~~----el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~n 185 (757)
T COG5096 112 ALRTLSLLR--VK----ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIAN 185 (757)
T ss_pred HHHHHHhcC--hH----HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHH
Confidence 999999764 11 1234467777787778888777899998887764433323222 2323223232332 3444
Q ss_pred HHHHHHHHHhhccc
Q 001196 189 VLQSLGCIAQTAMP 202 (1125)
Q Consensus 189 ~L~aLgqIA~~aP~ 202 (1125)
+ |..++.++|.
T Consensus 186 A---l~sl~~i~~e 196 (757)
T COG5096 186 A---LASLAEIDPE 196 (757)
T ss_pred H---HHHHHHhchh
Confidence 4 4445555666
No 63
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=65.34 E-value=49 Score=29.81 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=52.2
Q ss_pred HHHHHHHH-hhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHH
Q 001196 94 EEELVNLL-KEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVL 172 (1125)
Q Consensus 94 v~~L~~lL-~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L 172 (1125)
++.|++.| .+.++.+...++.+|..++ +..+.+.|..++...+|.....|+.+|..+. + ...
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG-D------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-H------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-C------HHH
Confidence 46788888 6677778888888888654 1256888888888888999999999998542 2 234
Q ss_pred HHHHHHhhhcCC
Q 001196 173 YKRLVDMLEEKT 184 (1125)
Q Consensus 173 ~e~Lv~~Le~~s 184 (1125)
+..|+..|....
T Consensus 64 ~~~L~~~l~~~~ 75 (88)
T PF13646_consen 64 IPALIKLLQDDD 75 (88)
T ss_dssp HHHHHHHHTC-S
T ss_pred HHHHHHHHcCCC
Confidence 556666565543
No 64
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=64.48 E-value=19 Score=31.09 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=31.2
Q ss_pred cCceEEEecCCCCceEEEEEEEecCCCC--eeEEEecCCC
Q 001196 827 IGYRIKVWWPMDKQFYEGTIKSYDPIKK--KHVILYDDED 864 (1125)
Q Consensus 827 VG~rikV~WP~D~~wY~G~V~~yd~~~~--kH~V~YdDGD 864 (1125)
||.+|.++| .+..||.++|..-....+ ...|.|..=+
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~n 41 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWN 41 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTST
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCC
Confidence 899999999 899999999999988664 5778887444
No 65
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=64.24 E-value=28 Score=35.95 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccchhHHHHHHHHHHhcc
Q 001196 49 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGG 121 (1125)
Q Consensus 49 NkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~L~~lL~d-~n~~vve~aLkaLAk~gk 121 (1125)
-++.+..|.+++.. .+....-.|+.||..+.+.|...|...+ ++|++++.. .+..|...+|.++..|+.
T Consensus 39 ~k~a~ral~krl~~----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLS----KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 36667777766643 2345667899999999999999998875 666666653 344678889999998876
Q ss_pred chhhhhcccChhHHHHHHHHhhcC
Q 001196 122 TIREQLAATSSSVDLLLERLCLEG 145 (1125)
Q Consensus 122 ~i~e~~~~~~s~l~~~L~~lAleG 145 (1125)
.|+.. +.-..+..+...|-..|
T Consensus 115 ~f~~~--~~l~~i~~~y~~L~~~G 136 (142)
T cd03569 115 AFRNK--PQLKYVVDTYQILKAEG 136 (142)
T ss_pred HhCCC--cccHHHHHHHHHHHHcC
Confidence 55421 22233444444444444
No 66
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=64.00 E-value=3.2e+02 Score=34.65 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHHHHhh----ccch-hHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcC
Q 001196 71 FMQSCMDILGILARFSPLLLGGTEEELVNLLKE----ENEI-IKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEG 145 (1125)
Q Consensus 71 ~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d----~n~~-vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleG 145 (1125)
....-+.+|..|-..+|.-..+..+.|.+++.. .++. +-+.++-+++.....+.+.|...-++|++-|.+---+-
T Consensus 572 lqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~ 651 (858)
T COG5215 572 LQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCT 651 (858)
T ss_pred HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcch
Confidence 344566788888888888878777767665543 4333 34456666665555555556555566777776543333
Q ss_pred ChHHHHHHHHHHHhhcCCCcc---chHHHHHHHHHHhhhcCC----CCchHHHHHHHHHhhccccccchhHHHHHHHH
Q 001196 146 SRRQAKYAVHALAAITKDDGL---KSLSVLYKRLVDMLEEKT----HLPAVLQSLGCIAQTAMPVFETRESEIEEFIK 216 (1125)
Q Consensus 146 TPrqAKyAVr~LaAls~d~~~---~~ls~L~e~Lv~~Le~~s----~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIi 216 (1125)
.+-..--||-+++-++..-+. .+..++...|+.+|.... -=|+.|.+.|-||..--.-|+.+-+.|+-...
T Consensus 652 d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~q 729 (858)
T COG5215 652 DRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQ 729 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344456777776655544332 345667777888776442 34999999999999999999999888876653
No 67
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=63.85 E-value=12 Score=36.10 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=37.4
Q ss_pred hHhhHHHHHHHHHHhhhccc-CCCCC--HHHHHHHhhcccCCchhHHHH
Q 001196 293 DKAHLRLASAKAVLRLSRQW-DHKIP--VDVFHLTLRTPEISFPQAKKL 338 (1125)
Q Consensus 293 ~kArLRLaAa~sLLKLAr~~-d~~It--p~~F~~La~lvQD~~~eVR~~ 338 (1125)
.-+|.|..|..+|-.|++.. +..+. .+.|..|+.++.|+.+.||..
T Consensus 39 ~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~ 87 (97)
T PF12755_consen 39 QDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSA 87 (97)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH
Confidence 34789999999999999874 33332 567888889999999999986
No 68
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=61.96 E-value=87 Score=38.40 Aligned_cols=150 Identities=20% Similarity=0.219 Sum_probs=95.6
Q ss_pred ceeeehhcccchhhHHHHHHHHHhcc-CC-----cHHHHHHHHHHHhcccccCHHHHH--HHHHHHHhccCcchhhhHHH
Q 001196 3 EFVLWIDFVSIYFPVLQDDLLKILGA-KH-----RLYDFLSTLSMKCSYLLFNKEHVK--EILLEVAAQKSSANAQFMQS 74 (1125)
Q Consensus 3 ~~~~~~~~~s~~~~~ar~ELLKRLg~-k~-----~l~etlk~LL~RsS~lifNkShV~--~LL~~vs~~~s~~~~~~~~~ 74 (1125)
+|-+|.. +...+-..++-.|+. .. -.+..+...|.-..-.+||..-+. .+|+ +.. +..+.-...+
T Consensus 319 sfsvWeq----~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le-aa~--ds~~~v~~~A 391 (516)
T KOG2956|consen 319 SFSVWEQ----HFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE-AAK--DSQDEVMRVA 391 (516)
T ss_pred chhHHHH----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH-HHh--CCchhHHHHH
Confidence 4566653 233333445555544 22 156667777777777788876543 4444 222 2344445667
Q ss_pred HHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchh-hhhcccChhHHHHHHHHhhcCChHHHHHH
Q 001196 75 CMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIR-EQLAATSSSVDLLLERLCLEGSRRQAKYA 153 (1125)
Q Consensus 75 AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~-e~~~~~~s~l~~~L~~lAleGTPrqAKyA 153 (1125)
+..+|..++.+-|.. ++..++.+|.-.|+.....+|+.+.+.-..+. |.+-.+-..+.+.+.+-+-.-+-..=|-|
T Consensus 392 eed~~~~las~~P~~---~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKta 468 (516)
T KOG2956|consen 392 EEDCLTTLASHLPLQ---CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTA 468 (516)
T ss_pred HHHHHHHHHhhCchh---HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhH
Confidence 778899999999964 67777777776777778899999998765554 23334455566666666654445556999
Q ss_pred HHHHHhhcC
Q 001196 154 VHALAAITK 162 (1125)
Q Consensus 154 Vr~LaAls~ 162 (1125)
|-||.|+..
T Consensus 469 VfCLVamv~ 477 (516)
T KOG2956|consen 469 VFCLVAMVN 477 (516)
T ss_pred HHhHHHHHH
Confidence 999997664
No 69
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=59.46 E-value=41 Score=30.30 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=50.8
Q ss_pred HHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccCh
Q 001196 53 VKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSS 132 (1125)
Q Consensus 53 V~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s 132 (1125)
|+.|++.+..+ .+......+..+|. ..... ..+..|+.++.++++.+...++.+|..+|. .
T Consensus 1 i~~L~~~l~~~---~~~~vr~~a~~~L~---~~~~~---~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~ 61 (88)
T PF13646_consen 1 IPALLQLLQND---PDPQVRAEAARALG---ELGDP---EAIPALIELLKDEDPMVRRAAARALGRIGD----------P 61 (88)
T ss_dssp HHHHHHHHHTS---SSHHHHHHHHHHHH---CCTHH---HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------H
T ss_pred CHHHHHHHhcC---CCHHHHHHHHHHHH---HcCCH---hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------H
Confidence 57788866443 22233344555555 22111 235888899988888899999999998752 2
Q ss_pred hHHHHHHHHhhcCChHH-HHHHHHHH
Q 001196 133 SVDLLLERLCLEGSRRQ-AKYAVHAL 157 (1125)
Q Consensus 133 ~l~~~L~~lAleGTPrq-AKyAVr~L 157 (1125)
...+.|.+++....... -..|+.+|
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 35566777666554333 24455554
No 70
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.19 E-value=1.1e+02 Score=38.18 Aligned_cols=226 Identities=13% Similarity=0.137 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccc-----cHHHHHHHHhhccchhHHHHHHHHHHhccc---
Q 001196 51 EHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGG-----TEEELVNLLKEENEIIKEGILHVLAKAGGT--- 122 (1125)
Q Consensus 51 ShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~-----~v~~L~~lL~d~n~~vve~aLkaLAk~gk~--- 122 (1125)
-.|+.|++-+.. +.+.....-|.-.|..|+...+..-+. .+.-|+.+|...++.+.+-+.-+|+++++.
T Consensus 109 G~v~~lV~~l~~---~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 109 GVVPRLVEFLSR---DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred CcHHHHHHHHcc---CCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH
Confidence 345555553332 222334444556677777755444332 357889999998888999999999987543
Q ss_pred hhhhhcccChhHHHHHHHHhhcCCh-HHHHHHHHHHHhhcCCCc----cchHHHHHHHHHHhhhcCC--CCchHHHHHHH
Q 001196 123 IREQLAATSSSVDLLLERLCLEGSR-RQAKYAVHALAAITKDDG----LKSLSVLYKRLVDMLEEKT--HLPAVLQSLGC 195 (1125)
Q Consensus 123 i~e~~~~~~s~l~~~L~~lAleGTP-rqAKyAVr~LaAls~d~~----~~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgq 195 (1125)
++. +. .+...++.|-++-....+ ..-+.|+-+|.-++..+. ......++..|...|...+ -+.-..-+|+.
T Consensus 186 ~Rd-~v-l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsy 263 (514)
T KOG0166|consen 186 CRD-YV-LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSY 263 (514)
T ss_pred HHH-HH-HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 221 11 233333333333333333 334455555554444332 1234555666666555554 34446667777
Q ss_pred HHhhccccccch-hHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchH-HHHHH
Q 001196 196 IAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGID-DLLGI 273 (1125)
Q Consensus 196 IA~~aP~vfe~~-~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~-~llkL 273 (1125)
|.-..++...-. +..++..++. +|...... ..+-||+++-|...+.. .+....+. .++..
T Consensus 264 Lsdg~ne~iq~vi~~gvv~~LV~-lL~~~~~~----------------v~~PaLRaiGNIvtG~d-~QTq~vi~~~~L~~ 325 (514)
T KOG0166|consen 264 LTDGSNEKIQMVIDAGVVPRLVD-LLGHSSPK----------------VVTPALRAIGNIVTGSD-EQTQVVINSGALPV 325 (514)
T ss_pred HhcCChHHHHHHHHccchHHHHH-HHcCCCcc----------------cccHHHhhccceeeccH-HHHHHHHhcChHHH
Confidence 776555554432 3445555553 44332211 11348888888443332 22222222 24455
Q ss_pred HHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhc
Q 001196 274 LKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSR 310 (1125)
Q Consensus 274 L~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr 310 (1125)
|..++ ...++.++|-.|+-.|--++.
T Consensus 326 l~~ll-----------~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 326 LSNLL-----------SSSPKESIKKEACWTISNITA 351 (514)
T ss_pred HHHHh-----------ccCcchhHHHHHHHHHHHhhc
Confidence 55544 123556688888888877775
No 71
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=58.00 E-value=11 Score=48.07 Aligned_cols=47 Identities=23% Similarity=0.491 Sum_probs=36.9
Q ss_pred CcccCceEEEecCCC----CceEEEEEEEecCCCC--------eeEEEecCCCceeeec
Q 001196 824 EDLIGYRIKVWWPMD----KQFYEGTIKSYDPIKK--------KHVILYDDEDVEVLRL 870 (1125)
Q Consensus 824 ~~lVG~rikV~WP~D----~~wY~G~V~~yd~~~~--------kH~V~YdDGD~E~L~L 870 (1125)
+--.+-+|+|||-+- .+|++|+|-+.-|..- ++.|+||.|+.+.+.=
T Consensus 978 nW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e~~~~sp 1036 (1113)
T KOG0644|consen 978 NWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTETELHSP 1036 (1113)
T ss_pred ccccccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCcccccCc
Confidence 334789999999754 6899999999876554 5899999997766544
No 72
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=57.99 E-value=3.3e+02 Score=32.69 Aligned_cols=169 Identities=12% Similarity=0.087 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHHHhhCCcC--ccccHHHHHHHH-hhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCC
Q 001196 70 QFMQSCMDILGILARFSPLL--LGGTEEELVNLL-KEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS 146 (1125)
Q Consensus 70 ~~~~~AleLL~~IS~~~P~L--Fk~~v~~L~~lL-~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGT 146 (1125)
.....+.++|..+..-+|.- +....+.+...+ ...+......++.+++-++|.+--...+....+...|-.+ =++
T Consensus 205 ~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~l--L~~ 282 (415)
T PF12460_consen 205 FSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLEL--LSS 282 (415)
T ss_pred HHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH--hCC
Confidence 34566778888888876543 333344444433 1122222334444444333322100111222233333332 244
Q ss_pred hHHHHHHHHHHHhhcCC-Cc---------------cchHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhcccc-ccch
Q 001196 147 RRQAKYAVHALAAITKD-DG---------------LKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPV-FETR 207 (1125)
Q Consensus 147 PrqAKyAVr~LaAls~d-~~---------------~~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~v-fe~~ 207 (1125)
+.-+..|++++..+..+ +. ...|..++..|++.....+ .=...|.+|+.|.+..|.. +..+
T Consensus 283 ~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~ 362 (415)
T PF12460_consen 283 PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPE 362 (415)
T ss_pred hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHH
Confidence 76778888888766666 21 1234455555555544443 3467899999999999844 4556
Q ss_pred hHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcC
Q 001196 208 ESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLP 257 (1125)
Q Consensus 208 ~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla 257 (1125)
-..|...+++-|=+.+. ..+..+|.+|...+.-
T Consensus 363 l~~LlPLLlqsL~~~~~-----------------~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 363 LPTLLPLLLQSLSLPDA-----------------DVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHHHHc
Confidence 77888887776622111 1456777777766644
No 73
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.23 E-value=5.7e+02 Score=33.17 Aligned_cols=159 Identities=17% Similarity=0.209 Sum_probs=100.2
Q ss_pred cccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHH----HHHhhccchhHHHHHHHHHHhcc
Q 001196 46 LLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELV----NLLKEENEIIKEGILHVLAKAGG 121 (1125)
Q Consensus 46 lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~----~lL~d~n~~vve~aLkaLAk~gk 121 (1125)
.+|..+-++.||=.+...-....=...+++.=.|-.|+.-|=.-|-.|..+|+ .+|.+..+.|..-++=+|+.|++
T Consensus 384 nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 384 NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhh
Confidence 45666777777665544322221133456677788888888888888876654 55556666666677888888887
Q ss_pred chhhhhcccChhHHHHHH---HHhhcCChHHHHHHHHHHHhhcCCCcc---chHHHHHHHHHHhhh-cCC-CCchHHHHH
Q 001196 122 TIREQLAATSSSVDLLLE---RLCLEGSRRQAKYAVHALAAITKDDGL---KSLSVLYKRLVDMLE-EKT-HLPAVLQSL 193 (1125)
Q Consensus 122 ~i~e~~~~~~s~l~~~L~---~lAleGTPrqAKyAVr~LaAls~d~~~---~~ls~L~e~Lv~~Le-~~s-~l~T~L~aL 193 (1125)
.+-.+. .+..|.+.|+ +-.+-++-+.--.|..+++.+-.+.+. -+++.|+..++..+. |.. |+.-..-|+
T Consensus 464 wv~~~~--~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAI 541 (885)
T KOG2023|consen 464 WVVQDS--RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAI 541 (885)
T ss_pred hHhcCC--hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHH
Confidence 654222 3344555555 344556655555666666654444432 356667777776665 443 898889999
Q ss_pred HHHHhhccccccc
Q 001196 194 GCIAQTAMPVFET 206 (1125)
Q Consensus 194 gqIA~~aP~vfe~ 206 (1125)
|-+|-.....+..
T Consensus 542 gtlAdsvg~~Ln~ 554 (885)
T KOG2023|consen 542 GTLADSVGHALNK 554 (885)
T ss_pred HHHHHHHHHhcCc
Confidence 9999877666643
No 74
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=55.77 E-value=48 Score=34.23 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh------ccchhHHHHHHHHH
Q 001196 50 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE------ENEIIKEGILHVLA 117 (1125)
Q Consensus 50 kShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~L~~lL~d------~n~~vve~aLkaLA 117 (1125)
+..+..|.+++.. .+....-.|+.||..+.+.|..-|..++ .+|++++.. .+..|...+|..+-
T Consensus 37 k~a~rai~krl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 37 QLAVRLLAHKIQS----PQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 5667777666643 2345667899999999999999998775 678888853 24468888999999
Q ss_pred Hhccchh
Q 001196 118 KAGGTIR 124 (1125)
Q Consensus 118 k~gk~i~ 124 (1125)
.|+..|+
T Consensus 113 ~W~~~f~ 119 (139)
T cd03567 113 SWTLELP 119 (139)
T ss_pred HHHHHhc
Confidence 8876554
No 75
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=55.63 E-value=51 Score=33.97 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=51.9
Q ss_pred cCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HH-HHHHHhh-c--cchhHHHHHHHHH
Q 001196 48 FNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EE-LVNLLKE-E--NEIIKEGILHVLA 117 (1125)
Q Consensus 48 fNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~-L~~lL~d-~--n~~vve~aLkaLA 117 (1125)
--+..+..|.+++.. +.+....-.|+.||..+.+.|...|..++ ++ |++++.. . ...|...+|..+.
T Consensus 35 ~~k~a~ralkkRl~~---~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~ 111 (141)
T cd03565 35 GPKDAVRALKKRLNG---NKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQ 111 (141)
T ss_pred cHHHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHH
Confidence 346777777777642 12334556699999999999999999764 56 7777753 2 2357778888888
Q ss_pred Hhccchh
Q 001196 118 KAGGTIR 124 (1125)
Q Consensus 118 k~gk~i~ 124 (1125)
.|+..|+
T Consensus 112 ~W~~~f~ 118 (141)
T cd03565 112 AWADAFR 118 (141)
T ss_pred HHHHHhC
Confidence 8875553
No 76
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=52.45 E-value=35 Score=34.54 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhhc---cchhHHHHHHHHHHhc
Q 001196 50 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKEE---NEIIKEGILHVLAKAG 120 (1125)
Q Consensus 50 kShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~L~~lL~d~---n~~vve~aLkaLAk~g 120 (1125)
++.+..|.+++.. .+....-.|+.||..+.+.|...|...+ .+|++++... +..|...+|..+..|+
T Consensus 36 k~a~raL~krl~~----~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 36 KEAARAIRKKIKY----GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 5666666666543 2345667899999999999999997765 4577777652 4467888999999887
Q ss_pred cchh
Q 001196 121 GTIR 124 (1125)
Q Consensus 121 k~i~ 124 (1125)
..|+
T Consensus 112 ~~f~ 115 (133)
T cd03561 112 ESFG 115 (133)
T ss_pred HHhc
Confidence 6654
No 77
>PF05536 Neurochondrin: Neurochondrin
Probab=51.01 E-value=6.1e+02 Score=31.97 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=57.0
Q ss_pred HHHHHHHhccCc----chhhhHHHHHHHHHHHHhhCCcCccc-----cHHHHHHHHhhccc-hhHHHHHHHHHHhccchh
Q 001196 55 EILLEVAAQKSS----ANAQFMQSCMDILGILARFSPLLLGG-----TEEELVNLLKEENE-IIKEGILHVLAKAGGTIR 124 (1125)
Q Consensus 55 ~LL~~vs~~~s~----~~~~~~~~AleLL~~IS~~~P~LFk~-----~v~~L~~lL~d~n~-~vve~aLkaLAk~gk~i~ 124 (1125)
.+|+++-++... ....+...|..+|-.++. -|.+-.+ .+.-|+++|..... .++..++++|+.++.+ +
T Consensus 53 ~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~ 130 (543)
T PF05536_consen 53 KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-P 130 (543)
T ss_pred hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-c
Confidence 445555443222 234567789999998888 5555333 35778888887555 7888999999977632 2
Q ss_pred hh-hcccChhHHHHHHHHhhcCChHHHHHHHHHHH
Q 001196 125 EQ-LAATSSSVDLLLERLCLEGSRRQAKYAVHALA 158 (1125)
Q Consensus 125 e~-~~~~~s~l~~~L~~lAleGTPrqAKyAVr~La 158 (1125)
+. ..-....-++.|-..+.. .+.+--.|..+|.
T Consensus 131 ~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 131 EGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred HhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 11 111223334445554444 3333334555544
No 78
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=48.45 E-value=62 Score=33.00 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhhc-cch---hHHHHHHHHHHh
Q 001196 50 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKEE-NEI---IKEGILHVLAKA 119 (1125)
Q Consensus 50 kShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~L~~lL~d~-n~~---vve~aLkaLAk~ 119 (1125)
++.+..|-+++.. .+....-.|+.||..+.+.|...|...+ ..|.+++... ... |.+.+|..|..|
T Consensus 41 kea~~~l~krl~~----~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 41 KEAARALRKRLKH----GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHHHTT----SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 4455555554433 3445677899999999999999998875 5566666652 222 788899999988
Q ss_pred ccch
Q 001196 120 GGTI 123 (1125)
Q Consensus 120 gk~i 123 (1125)
+..|
T Consensus 117 ~~~f 120 (140)
T PF00790_consen 117 AEAF 120 (140)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8666
No 79
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=48.02 E-value=79 Score=32.10 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhhcc-ch-hHHHHHHHHHHhc
Q 001196 49 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKEEN-EI-IKEGILHVLAKAG 120 (1125)
Q Consensus 49 NkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~L~~lL~d~n-~~-vve~aLkaLAk~g 120 (1125)
-++.+..|.+++.. .+....-.|+.||..+.+.|..-|...+ +.|..++.... .. |...+|..+..|+
T Consensus 35 ~k~a~r~l~krl~~----~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 35 PKDAVRLLKKRLNN----KNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 36666666666542 2345667899999999999999998875 55556655522 23 7888888888887
Q ss_pred cchh
Q 001196 121 GTIR 124 (1125)
Q Consensus 121 k~i~ 124 (1125)
..|.
T Consensus 111 ~~f~ 114 (133)
T smart00288 111 DAFK 114 (133)
T ss_pred HHHc
Confidence 6553
No 80
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.78 E-value=7.8e+02 Score=32.27 Aligned_cols=40 Identities=8% Similarity=0.146 Sum_probs=24.2
Q ss_pred cccchhhHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHHHHHHHHhhcc
Q 001196 404 ATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHK 452 (1125)
Q Consensus 404 ~~~pEyvLpyLIHLLAHH~~Pdf~~~~d~~al~~~~~yL~FyLe~La~~ 452 (1125)
+.|-.-++-+.|..=+-. +.....+|-+||-.+++...-.
T Consensus 386 t~yrdell~~II~iCS~s---------nY~~ItdFEWYlsVlveLa~l~ 425 (877)
T KOG1059|consen 386 TNYRDELLTRIISICSQS---------NYQYITDFEWYLSVLVELARLE 425 (877)
T ss_pred hhHHHHHHHHHHHHhhhh---------hhhhhhhHHHHHHHHHHHHhcc
Confidence 345555666666665555 2334456677887777775544
No 81
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.54 E-value=3.9e+02 Score=34.76 Aligned_cols=163 Identities=13% Similarity=0.155 Sum_probs=98.6
Q ss_pred HHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCcccc--HHHHHHHHhhccchhHHHH
Q 001196 35 FLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGI 112 (1125)
Q Consensus 35 tlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~--v~~L~~lL~d~n~~vve~a 112 (1125)
.++.|-.|.+..+=-..-+..+++-+.++..+++.-....+.-...-+=...|.++... ++.|..++.++|+.|+..+
T Consensus 101 ~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnA 180 (734)
T KOG1061|consen 101 LIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANA 180 (734)
T ss_pred HHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHH
Confidence 35556666655555555566666655555545443344555566666677788888876 5889999999999999999
Q ss_pred HHHHHHhccchhh-hhcc----cChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC--C
Q 001196 113 LHVLAKAGGTIRE-QLAA----TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--H 185 (1125)
Q Consensus 113 LkaLAk~gk~i~e-~~~~----~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s--~ 185 (1125)
|.+|+.+...-+. .... .-..+..+|. .|.++ .|+ .=..+|+--.+++. .-+.+|++.+.+.|.... .
T Consensus 181 laaL~eI~e~~~~~~~~~l~~~~~~~lL~al~-ec~EW--~qi-~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~av 255 (734)
T KOG1061|consen 181 LAALSEIHESHPSVNLLELNPQLINKLLEALN-ECTEW--GQI-FILDCLAEYVPKDS-REAEDICERLTPRLQHANSAV 255 (734)
T ss_pred HHHHHHHHHhCCCCCcccccHHHHHHHHHHHH-Hhhhh--hHH-HHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcce
Confidence 9999976422111 1111 1222333333 33333 333 11233332333333 235678999999887664 6
Q ss_pred CchHHHHHHHHHhhccc
Q 001196 186 LPAVLQSLGCIAQTAMP 202 (1125)
Q Consensus 186 l~T~L~aLgqIA~~aP~ 202 (1125)
.++.+.++-++..+.+.
T Consensus 256 vlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 256 VLSAVKVILQLVKYLKQ 272 (734)
T ss_pred EeehHHHHHHHHHHHHH
Confidence 67778888888777666
No 82
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=46.43 E-value=8.7e+02 Score=32.43 Aligned_cols=44 Identities=9% Similarity=0.015 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHhhhcccCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHH
Q 001196 295 AHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQ 345 (1125)
Q Consensus 295 ArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k 345 (1125)
..+|.+|+.+|=+|.. ++-.-.|+.+++|+...||+.=+.-|-.
T Consensus 821 ~~VR~~Aa~aL~~l~~-------~~a~~~L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 821 WQVRQGAARALAGAAA-------DVAVPALVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred hHHHHHHHHHHHhccc-------cchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 4578888888766531 1223444556688888888876666654
No 83
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=45.16 E-value=8.7e+02 Score=32.08 Aligned_cols=84 Identities=15% Similarity=0.069 Sum_probs=41.3
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC-CCch-HHHHHHHHHhhccccccchhH
Q 001196 132 SSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HLPA-VLQSLGCIAQTAMPVFETRES 209 (1125)
Q Consensus 132 s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s-~l~T-~L~aLgqIA~~aP~vfe~~~~ 209 (1125)
-.|+++|+.+...-=+..-+.|+..|.-+...+-.. -..|+..+|..|-.-. ...+ .--.|-.|..-+|..--...+
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq-E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~ 381 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ-ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVID 381 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH-HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehHH
Confidence 346666666665443444455555554333332111 1234555555443221 1111 122344555667877666677
Q ss_pred HHHHHHH
Q 001196 210 EIEEFIK 216 (1125)
Q Consensus 210 eI~~fIi 216 (1125)
+|.+|+.
T Consensus 382 EIer~~F 388 (988)
T KOG2038|consen 382 EIERLAF 388 (988)
T ss_pred HHHHHHc
Confidence 8887764
No 84
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.91 E-value=1.3e+02 Score=39.07 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccc
Q 001196 70 QFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGT 122 (1125)
Q Consensus 70 ~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~ 122 (1125)
.+...|.+.|..+|..+|+.-..+-.+|-.++.+.|-.++.-++-+|.++|..
T Consensus 297 ~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e 349 (865)
T KOG1078|consen 297 ALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTE 349 (865)
T ss_pred HHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcch
Confidence 45678999999999999999999999999999999888888888888888753
No 85
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.76 E-value=8.8e+02 Score=32.06 Aligned_cols=108 Identities=14% Similarity=0.085 Sum_probs=69.9
Q ss_pred HhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhh
Q 001196 101 LKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDML 180 (1125)
Q Consensus 101 L~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~L 180 (1125)
|...|-.++-.+|-+|..++.. ..-+.+.+-.++++..-.|---|-|+-|+..+....- ...+-++..-...|
T Consensus 116 L~s~nq~vVglAL~alg~i~s~------EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL 188 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICSP------EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLL 188 (866)
T ss_pred ccCCCeeehHHHHHHhhccCCH------HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHH
Confidence 3335666777788888777532 2446788889999999888777777777654443211 11223333444445
Q ss_pred hcCC--CCchHHHHHHHHHhhccccccchhHHHHHHH
Q 001196 181 EEKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFI 215 (1125)
Q Consensus 181 e~~s--~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fI 215 (1125)
.+.. -+.+.|+-+-.+.+..|+..+...+.+-.||
T Consensus 189 ~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV 225 (866)
T KOG1062|consen 189 CEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLV 225 (866)
T ss_pred hhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 5554 5788888888999998887766555555554
No 86
>PRK09687 putative lyase; Provisional
Probab=43.10 E-value=1.8e+02 Score=33.34 Aligned_cols=164 Identities=13% Similarity=0.116 Sum_probs=90.7
Q ss_pred cchhhHHHHHHHHHhccCCc--HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcC
Q 001196 12 SIYFPVLQDDLLKILGAKHR--LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL 89 (1125)
Q Consensus 12 s~~~~~ar~ELLKRLg~k~~--l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L 89 (1125)
+.+....-++|+..|...+. -...+..|-.+. +...++.++. +..+ .+...-..|...|.+|...-. .
T Consensus 18 ~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----~~~~~~~l~~-ll~~---~d~~vR~~A~~aLg~lg~~~~-~ 87 (280)
T PRK09687 18 SQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRG-----GQDVFRLAIE-LCSS---KNPIERDIGADILSQLGMAKR-C 87 (280)
T ss_pred HHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcC-----cchHHHHHHH-HHhC---CCHHHHHHHHHHHHhcCCCcc-c
Confidence 34444555778888877665 344455544443 2333344444 4332 233445567777777654211 1
Q ss_pred ccccHHHHHHH-HhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccch
Q 001196 90 LGGTEEELVNL-LKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKS 168 (1125)
Q Consensus 90 Fk~~v~~L~~l-L~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ 168 (1125)
.......|..+ +.+.++.|...++.+|.+++..-. .....+...|.......++..-..|+.+|+. .++.
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~-~~~~---- 158 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSV-INDE---- 158 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhc-cCCH----
Confidence 12234556666 455666667788888888754311 1133456667666666788777888888873 3321
Q ss_pred HHHHHHHHHHhhhcCCCC--chHHHHHHHH
Q 001196 169 LSVLYKRLVDMLEEKTHL--PAVLQSLGCI 196 (1125)
Q Consensus 169 ls~L~e~Lv~~Le~~s~l--~T~L~aLgqI 196 (1125)
..+..|+..|...+.. .....+||.+
T Consensus 159 --~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 159 --AAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 2466677767655421 2235556655
No 87
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=42.97 E-value=26 Score=39.11 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=31.4
Q ss_pred cccCceEEEecCCCCceEEEEEEEecCCCCeeEEEec
Q 001196 825 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYD 861 (1125)
Q Consensus 825 ~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~Yd 861 (1125)
-=||.+|.+-|++|..||.++|....+.++.-.|.++
T Consensus 91 w~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~ 127 (262)
T KOG3026|consen 91 WKVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFA 127 (262)
T ss_pred cccCCEEEEeecCCCceEEeehhhccCCCCceeEEEe
Confidence 3499999999999999999999999997666655553
No 88
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=42.52 E-value=1.1e+02 Score=29.73 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=52.0
Q ss_pred HHHHHHHHhhCCcCccccH----HHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHH
Q 001196 76 MDILGILARFSPLLLGGTE----EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAK 151 (1125)
Q Consensus 76 leLL~~IS~~~P~LFk~~v----~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAK 151 (1125)
+--|..++...|.....+. +.++..+.|.+..+-..++.+|+++.+..+....+....+...|-+++.--. ...|
T Consensus 7 li~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d-~~Vr 85 (97)
T PF12755_consen 7 LIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD-ENVR 85 (97)
T ss_pred HHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHH
Confidence 3344445555555555554 4445666678888889999999998876665555545556666666654333 3356
Q ss_pred HHHHHHHhhc
Q 001196 152 YAVHALAAIT 161 (1125)
Q Consensus 152 yAVr~LaAls 161 (1125)
.|+..|..+.
T Consensus 86 ~~a~~Ld~ll 95 (97)
T PF12755_consen 86 SAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHh
Confidence 6666665433
No 89
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=40.77 E-value=6e+02 Score=28.96 Aligned_cols=92 Identities=16% Similarity=0.060 Sum_probs=52.2
Q ss_pred cchhhHHHHHHHHHhccCCcHHHHHHHHHHHhcccccCHHHHHHHHHHHHhccC--cchhhhHHHHHHHHHHHHhhCCcC
Q 001196 12 SIYFPVLQDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKS--SANAQFMQSCMDILGILARFSPLL 89 (1125)
Q Consensus 12 s~~~~~ar~ELLKRLg~k~~l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s--~~~~~~~~~AleLL~~IS~~~P~L 89 (1125)
.....+.-+=+..||.....+...++.|..=..+--|..+.+..+++.+..... .........+.+||..+-..++.-
T Consensus 37 ~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~ 116 (262)
T PF14500_consen 37 RQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREA 116 (262)
T ss_pred HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 334455556677888665544333444433334455888888888887754211 122234456778888877777654
Q ss_pred cccc----HHHHHHHHhh
Q 001196 90 LGGT----EEELVNLLKE 103 (1125)
Q Consensus 90 Fk~~----v~~L~~lL~d 103 (1125)
.+.. +..++.++.-
T Consensus 117 l~~~~~~fv~~~i~~~~g 134 (262)
T PF14500_consen 117 LQSMGDDFVYGFIQLIDG 134 (262)
T ss_pred HHhchhHHHHHHHHHhcc
Confidence 4433 3444444443
No 90
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=40.40 E-value=53 Score=33.75 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=37.1
Q ss_pred CCceEEEEEEEecCCCCeeEEEecCCCceeeecCcceEEEecCCCCCccccc
Q 001196 838 DKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDNGRKPTKKSK 889 (1125)
Q Consensus 838 D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~~Ek~~~~~~~~~~~k~~k 889 (1125)
+..||.|++.+.+....+..|+++||. ..+.++.+..++---.++.+.+
T Consensus 21 ~~~yYPa~~~~~~~~~~~~~V~Fedg~---~~i~~~dv~~LDlRIGD~Vkv~ 69 (131)
T PF08605_consen 21 NLKYYPATCVGSGVDRDRSLVRFEDGT---YEIKNEDVKYLDLRIGDTVKVD 69 (131)
T ss_pred CCeEeeEEEEeecCCCCeEEEEEecCc---eEeCcccEeeeeeecCCEEEEC
Confidence 789999999999887778999999999 4455666777765434444444
No 91
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=39.31 E-value=1.5e+02 Score=37.15 Aligned_cols=125 Identities=19% Similarity=0.113 Sum_probs=69.2
Q ss_pred HHHHhhCCcCccccHHHHHHHHhhccchhHH-------HHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHH
Q 001196 80 GILARFSPLLLGGTEEELVNLLKEENEIIKE-------GILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY 152 (1125)
Q Consensus 80 ~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve-------~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKy 152 (1125)
.+|+...-.-|.-..-+++.+|....+.+++ ..|++|+.....-|+-..| +.+.|.-|-..-.| +-.+
T Consensus 143 ~el~rn~~~ylslaai~~adLL~~hTEv~~~siLSgn~~LLrvlS~Vye~~P~~i~P----hlP~l~~lL~q~~p-~~~~ 217 (851)
T KOG3723|consen 143 KELCRNMSNYLSLAAITKADLLADHTEVIVKSILSGNTMLLRVLSAVYEKQPQPINP----HLPELLALLSQLEP-EQYH 217 (851)
T ss_pred hhhcccchhhhhHHHHhhhhhccCchHHHHHHHhccchHHHHHHHHHHhcCCCccCc----ccHHHHHHhcCCCH-HHHH
Confidence 3333333333433444555555553332222 4577777655443433333 34444444443344 4458
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccccccchhH
Q 001196 153 AVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRES 209 (1125)
Q Consensus 153 AVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s~l~T~L~aLgqIA~~aP~vfe~~~~ 209 (1125)
++++|..+...+....++..+-.|+-+|....+.-..++-|-.||.+.|...-.+.+
T Consensus 218 ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~l~~~~E 274 (851)
T KOG3723|consen 218 LLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPVALNSFLE 274 (851)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCccchhhHHH
Confidence 899988777766665666666666666666655555666677777777766554443
No 92
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=38.84 E-value=9.6e+02 Score=30.78 Aligned_cols=136 Identities=14% Similarity=0.256 Sum_probs=89.7
Q ss_pred HHHHHHHHHhh--CCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHH
Q 001196 75 CMDILGILARF--SPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY 152 (1125)
Q Consensus 75 AleLL~~IS~~--~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKy 152 (1125)
+.++...+|.. .|+++...+..|..+|....-...-.++++|..++-..|+.... -.+-++.|...-++..+-|
T Consensus 284 ~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v----cN~evEsLIsd~Nr~Isty 359 (898)
T COG5240 284 AARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV----CNKEVESLISDENRTISTY 359 (898)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee----cChhHHHHhhcccccchHH
Confidence 34445554444 47777777888888888877666667889998887655543222 2334777888888999999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHhhhcCC-CC-chHHHHHHHHHhhccccccchhHHHHHHHHHhhhc
Q 001196 153 AVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HL-PAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILR 221 (1125)
Q Consensus 153 AVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s-~l-~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl 221 (1125)
|+..|. .+++.+ ....|+..|.....+-+ +| .-.+-+|-.+... |......+..|+..-|+.
T Consensus 360 AITtLL-KTGt~e--~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~----Fp~k~~s~l~FL~~~L~~ 423 (898)
T COG5240 360 AITTLL-KTGTEE--TIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLL----FPSKKLSYLDFLGSSLLQ 423 (898)
T ss_pred HHHHHH-HcCchh--hHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhh----CcHHHHHHHHHHHHHHHh
Confidence 999998 666654 35566777766555433 44 2234455554443 556677889998765553
No 93
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.37 E-value=1.7e+02 Score=37.85 Aligned_cols=153 Identities=16% Similarity=0.070 Sum_probs=80.0
Q ss_pred chhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhh-------------ccc-------hhHHHHHHHH-HHhccchhh
Q 001196 67 ANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKE-------------ENE-------IIKEGILHVL-AKAGGTIRE 125 (1125)
Q Consensus 67 ~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d-------------~n~-------~vve~aLkaL-Ak~gk~i~e 125 (1125)
...++..+|-+-|-.|-+.+|.-...-+..+.-.+.. ++. .+.-.+|+.+ .+.+..+++
T Consensus 513 nqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~ 592 (859)
T KOG1241|consen 513 NQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIRE 592 (859)
T ss_pred chhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchh
Confidence 3345667788888888888887666665444322222 111 1111222222 244444443
Q ss_pred hhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhc-CC--CCchHHHHHHHHHhhccc
Q 001196 126 QLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEE-KT--HLPAVLQSLGCIAQTAMP 202 (1125)
Q Consensus 126 ~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~-~s--~l~T~L~aLgqIA~~aP~ 202 (1125)
....+-..|+.+++.---.+.+..|=+||.+|+...+..=.++...++.-|...|.. .. -+.+..--.|-|++..-+
T Consensus 593 ~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~ 672 (859)
T KOG1241|consen 593 VSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALED 672 (859)
T ss_pred HHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 222233345555555111236899999999998766543234555555555555532 22 223334444444444445
Q ss_pred cccchhHHHHHHHHHhh
Q 001196 203 VFETRESEIEEFIKSKI 219 (1125)
Q Consensus 203 vfe~~~~eI~~fIiK~L 219 (1125)
-|....++|+.-+++.|
T Consensus 673 ~i~py~d~~mt~Lvq~L 689 (859)
T KOG1241|consen 673 DILPYCDELMTVLVQCL 689 (859)
T ss_pred hhhhHHHHHHHHHHHHc
Confidence 56666777777776544
No 94
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=37.19 E-value=7.7e+02 Score=34.85 Aligned_cols=188 Identities=14% Similarity=0.171 Sum_probs=95.4
Q ss_pred HHHHHHhcc-----CCcHHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH
Q 001196 20 DDLLKILGA-----KHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE 94 (1125)
Q Consensus 20 ~ELLKRLg~-----k~~l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v 94 (1125)
+..+|-|++ .|...|++-.|+...-.- .++-.|..||..-.++ + .--..+|...=..|+.+++.|.
T Consensus 363 eawiK~I~~~~~~~~hkv~Dl~lLlil~s~~~-~~~k~ie~ilkkKI~~--g------~it~~ll~~~f~~~~~vL~~~f 433 (1426)
T PF14631_consen 363 EAWIKAIESLEDASDHKVIDLWLLLILYSINE-DNRKSIEKILKKKIKS--G------HITEQLLDQTFKGHSEVLKDYF 433 (1426)
T ss_dssp HHHHHHHHHGGGSTT--THHHHHHHHHHHH-H-HHHHHHHHHHHHHHTT--T-------S-HHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHhcCCCccccchHHHHHHHHHHcCCc-cchHHHHHHHHHHHHh--C------cccHHHHHHHHhhhHHHHHHHH
Confidence 555666653 345788777776554222 3345577776643332 1 1234677777777888888887
Q ss_pred HHHHHHHhh---ccchhHHHHHHHHHHhc-cchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCc--cch
Q 001196 95 EELVNLLKE---ENEIIKEGILHVLAKAG-GTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDG--LKS 168 (1125)
Q Consensus 95 ~~L~~lL~d---~n~~vve~aLkaLAk~g-k~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~--~~~ 168 (1125)
..|+.+... +.+..+...=..+|+.. ..+ +.+ ....++..|....-.|+..++..|..+|..++.... ..-
T Consensus 434 ~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f-ds~--~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~ 510 (1426)
T PF14631_consen 434 PSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF-DSY--CQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQP 510 (1426)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--HH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc-cch--hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHH
Confidence 777655443 33333333323333221 000 000 123455555555556888889999999876665422 223
Q ss_pred HHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccchhHHHHHHHHHhh
Q 001196 169 LSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKI 219 (1125)
Q Consensus 169 ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~L 219 (1125)
++.++..|++.|+.=+ ++-..+..|+.+|--.+..-....++|--+|-|+|
T Consensus 511 fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQL 563 (1426)
T PF14631_consen 511 FATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQL 563 (1426)
T ss_dssp THHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhh
Confidence 4556666666555322 55556666666665443321122444444444433
No 95
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=34.93 E-value=22 Score=45.94 Aligned_cols=47 Identities=17% Similarity=0.432 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHHHHhh----ccchhHHHHHHHHH
Q 001196 71 FMQSCMDILGILARFSPLLLGGTEEELVNLLKE----ENEIIKEGILHVLA 117 (1125)
Q Consensus 71 ~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d----~n~~vve~aLkaLA 117 (1125)
++--++++|-+--.+-|-+..--++.++-++.. ++..+...+|+.|+
T Consensus 328 ~~~q~l~~lgey~e~lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~ 378 (1516)
T KOG1832|consen 328 YCIQCLEILGEYVEVLPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLIC 378 (1516)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhCchhhhhhhhhhhccccccccHHHHHHHH
Confidence 444566666666666665544445666555554 34445556666555
No 96
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=34.75 E-value=1.4e+03 Score=31.36 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCC---cCCChhhHhhHHHHHHHHHHhhhccc
Q 001196 244 KIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSED---IESSSVDKAHLRLASAKAVLRLSRQW 312 (1125)
Q Consensus 244 KI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~---~~tp~~~kArLRLaAa~sLLKLAr~~ 312 (1125)
.|...|+|.--|-- . . ...+.+++.|..++.+|.+... .--|+.+.=|+|| .|.||--|..|
T Consensus 727 riA~aryL~ELynf-e--m--vds~vIl~tLy~~i~~g~~~~~~~~~ldppddlFRirl--V~~lL~tc~~y 791 (1128)
T KOG2051|consen 727 RIALARYLGELYNF-E--M--VDSDVILNTLYHLISLGHFENLTPSALDPPDDLFRIRL--VCMLLQTCGPY 791 (1128)
T ss_pred HHHHHHHHHHHhhh-h--h--hhHHHHHHHHHHHhcccccCCCCcccCCChHHHHHHHH--HHHHHHHcccc
Confidence 45566666655421 1 1 1234478888888877766541 1125566666666 78888888653
No 97
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.65 E-value=1.3e+02 Score=38.74 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=93.2
Q ss_pred HHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccCh
Q 001196 53 VKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSS 132 (1125)
Q Consensus 53 V~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s 132 (1125)
|..|+-.+.++....+-..-.-+.--|...+...|.+-...+..+++-..+.|+.+.-.+++++--.. ......
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~------v~~i~e 120 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR------VDKITE 120 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe------ehHHHH
Confidence 33444444444333333445567777888899999988888888887777788765555555444221 111122
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCc-cchHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccchhH
Q 001196 133 SVDLLLERLCLEGSRRQAKYAVHALAAITKDDG-LKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRES 209 (1125)
Q Consensus 133 ~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~-~~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~ 209 (1125)
.+..-|.+....+.|-.=|-|+-|.+.+..... ...-..++..|.+.+.+.+ -.++.|++|.+|....|.... .
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~---~ 197 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL---L 197 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc---c
Confidence 233334444444555555556666554443322 2223446667766666443 678899999999999997432 2
Q ss_pred HHHHHHHHhhhcc
Q 001196 210 EIEEFIKSKILRC 222 (1125)
Q Consensus 210 eI~~fIiK~LLl~ 222 (1125)
.|..+++..+|.+
T Consensus 198 ~l~~~~~~~lL~a 210 (734)
T KOG1061|consen 198 ELNPQLINKLLEA 210 (734)
T ss_pred cccHHHHHHHHHH
Confidence 3444555555543
No 98
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=34.49 E-value=3.1e+02 Score=32.80 Aligned_cols=130 Identities=14% Similarity=0.173 Sum_probs=84.3
Q ss_pred HHHHHHHHHhc-ccccCHHHHHHHHHH-----HHhc--cCcchhhhHHHHHHHHHHHHhh--CCcCcccc-HHHHHHHHh
Q 001196 34 DFLSTLSMKCS-YLLFNKEHVKEILLE-----VAAQ--KSSANAQFMQSCMDILGILARF--SPLLLGGT-EEELVNLLK 102 (1125)
Q Consensus 34 etlk~LL~RsS-~lifNkShV~~LL~~-----vs~~--~s~~~~~~~~~AleLL~~IS~~--~P~LFk~~-v~~L~~lL~ 102 (1125)
..++.--||+. |++.|.+.+..+++. +..+ ....+....+-|++|...+-.+ .|..|.-. +..|+.+.+
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae 118 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAE 118 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHh
Confidence 34555566665 777788777777763 1121 1123344556799999989888 78777665 489999988
Q ss_pred hccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCc
Q 001196 103 EENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDG 165 (1125)
Q Consensus 103 d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~ 165 (1125)
+.++.....+|.+|..++=.-|+ +. ....=+..|.+.+.+|+...+-..+.+|..+.+.+.
T Consensus 119 ~~~D~lr~~cletL~El~l~~P~-lv-~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 119 HEDDRLRRICLETLCELALLNPE-LV-AECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred CCchHHHHHHHHHHHHHHhhCHH-HH-HHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 88888888999999987632232 21 122334667777777876666665555554555443
No 99
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=34.39 E-value=5.1e+02 Score=26.34 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHH----HhccchhhhhcccChhHHHHHHHHhhcCCh
Q 001196 74 SCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLA----KAGGTIREQLAATSSSVDLLLERLCLEGSR 147 (1125)
Q Consensus 74 ~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLA----k~gk~i~e~~~~~~s~l~~~L~~lAleGTP 147 (1125)
.-++|-..|... |.--+..+..|.+=|...|+.+.-.+|.+|- +.|..|..++ ....|+..|.+++.....
T Consensus 25 ~~l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev--~~~~fl~~l~~l~~~~~~ 99 (140)
T PF00790_consen 25 LILEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREV--ASKEFLDELVKLIKSKKT 99 (140)
T ss_dssp HHHHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHH--TSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHH--hHHHHHHHHHHHHccCCC
Confidence 344555555554 5555666677777777777766666655554 3445555333 366799999999886543
No 100
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=32.68 E-value=1.2e+02 Score=25.47 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=30.9
Q ss_pred cCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceee
Q 001196 827 IGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVL 868 (1125)
Q Consensus 827 VG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L 868 (1125)
+|++|+|..+ +..|.|.+...|+. +.=.|+.+||..+.+
T Consensus 2 lG~~V~v~~~--~~~~~G~~~gId~~-G~L~v~~~~g~~~~i 40 (48)
T PF02237_consen 2 LGQEVRVETG--DGEIEGIAEGIDDD-GALLVRTEDGSIRTI 40 (48)
T ss_dssp TTSEEEEEET--SCEEEEEEEEEETT-SEEEEEETTEEEEEE
T ss_pred CCCEEEEEEC--CeEEEEEEEEECCC-CEEEEEECCCCEEEE
Confidence 7999999994 45679999999876 777888888855443
No 101
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=32.05 E-value=1.1e+03 Score=29.41 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=31.0
Q ss_pred HhhHHHHHHHHHHhhhcccCCCCCHHHHHHHh-hcccCCchhHHHHHHHHH
Q 001196 294 KAHLRLASAKAVLRLSRQWDHKIPVDVFHLTL-RTPEISFPQAKKLFLSKV 343 (1125)
Q Consensus 294 kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La-~lvQD~~~eVR~~Fl~KL 343 (1125)
-..+|++|...|++.- | +...+..++ .+-.|++.||+.-....|
T Consensus 529 ~~EvRiaA~~~lm~t~--P----~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 529 PPEVRMAAVLVLMETK--P----SVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred ChHHHHHHHHHHHhcC--C----CHHHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence 3459999999988761 1 224566665 677899999988766554
No 102
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=31.67 E-value=3.5e+02 Score=28.81 Aligned_cols=93 Identities=24% Similarity=0.305 Sum_probs=56.4
Q ss_pred HHHHHHhccCCc--HHHHHHHHHHHhcccccCHHHHH-HHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCcccc-HH
Q 001196 20 DDLLKILGAKHR--LYDFLSTLSMKCSYLLFNKEHVK-EILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGT-EE 95 (1125)
Q Consensus 20 ~ELLKRLg~k~~--l~etlk~LL~RsS~lifNkShV~-~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~-v~ 95 (1125)
.+|+.-|..... --..+..|.+|..|-.-.-..|+ .+|..+.+.....+--.-..|.+||- .|..|+ +.
T Consensus 25 ~~lielLk~~~~~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLG-------tM~GGYNV~ 97 (154)
T PF11791_consen 25 AELIELLKNPPAGEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLG-------TMLGGYNVQ 97 (154)
T ss_dssp HHHHHHHHS--TT-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHT-------TS-SSTTHH
T ss_pred HHHHHHHhCCCCccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHh-------hccCCCcHH
Confidence 445555544332 34567778899999999999998 67776665321111122355777774 456665 89
Q ss_pred HHHHHHhhccchhHHHHHHHHHHh
Q 001196 96 ELVNLLKEENEIIKEGILHVLAKA 119 (1125)
Q Consensus 96 ~L~~lL~d~n~~vve~aLkaLAk~ 119 (1125)
.|+++|..+|+.++..+..+|.++
T Consensus 98 ~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 98 PLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHcCCcHHHHHHHHHHHHhh
Confidence 999999888888899999999876
No 103
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.55 E-value=3.5e+02 Score=34.90 Aligned_cols=124 Identities=13% Similarity=0.087 Sum_probs=77.4
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHhccchhhhh-----cccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc--
Q 001196 94 EEELVNLLKEENEIIKEGILHVLAKAGGTIREQL-----AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL-- 166 (1125)
Q Consensus 94 v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~-----~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~-- 166 (1125)
...|+.+|...+....|+++.+|.|+.-...+-+ ..--.-+++.+-+|....+|+.-++|+.|+-.+......
T Consensus 130 Lp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal 209 (885)
T KOG2023|consen 130 LPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQAL 209 (885)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHH
Confidence 4788888888777788999999998743222111 011234677888899999999999999997644433221
Q ss_pred -chHHHHHHHHHHhhhcCC-CC-chHHHHHHHHHhhccccccchhHHHHHHHHH
Q 001196 167 -KSLSVLYKRLVDMLEEKT-HL-PAVLQSLGCIAQTAMPVFETRESEIEEFIKS 217 (1125)
Q Consensus 167 -~~ls~L~e~Lv~~Le~~s-~l-~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK 217 (1125)
..+...++.|..--.+.+ .. -.+-.+|..+..+.|+-...|-..|++|+++
T Consensus 210 ~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~ 263 (885)
T KOG2023|consen 210 YVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQ 263 (885)
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHH
Confidence 112222333332111222 11 2344567777777888888888888888764
No 104
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=31.13 E-value=1.4e+03 Score=30.47 Aligned_cols=262 Identities=12% Similarity=0.072 Sum_probs=127.4
Q ss_pred HHHHHHHhccCCc-HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHH
Q 001196 19 QDDLLKILGAKHR-LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEEL 97 (1125)
Q Consensus 19 r~ELLKRLg~k~~-l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L 97 (1125)
...|+..|....+ +-...-.-|-+ +-..+.++.|+..+ .+ .+......|..-|..|....| ....|
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~----~~~~~~~~~L~~aL-~D---~d~~VR~~Aa~aL~~l~~~~~-----~~~~L 689 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTE----TTPPGFGPALVAAL-GD---GAAAVRRAAAEGLRELVEVLP-----PAPAL 689 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhh----hcchhHHHHHHHHH-cC---CCHHHHHHHHHHHHHHHhccC-----chHHH
Confidence 3678888887776 22222222222 22566778887744 22 233344566666777654333 24577
Q ss_pred HHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHH
Q 001196 98 VNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLV 177 (1125)
Q Consensus 98 ~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv 177 (1125)
..+|.+.++.+...++.+|..++.. . ...|..+....+|.--..|+++|..+. .. . .|.
T Consensus 690 ~~~L~~~d~~VR~~A~~aL~~~~~~----~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~-~~-----~----~l~ 748 (897)
T PRK13800 690 RDHLGSPDPVVRAAALDVLRALRAG----D-------AALFAAALGDPDHRVRIEAVRALVSVD-DV-----E----SVA 748 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhccC----C-------HHHHHHHhcCCCHHHHHHHHHHHhccc-Cc-----H----HHH
Confidence 7888887877777888888765421 0 012333444556666677888877432 11 1 122
Q ss_pred HhhhcCC-C-CchHHHHHHHHHhhccc-------cccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHH
Q 001196 178 DMLEEKT-H-LPAVLQSLGCIAQTAMP-------VFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGI 248 (1125)
Q Consensus 178 ~~Le~~s-~-l~T~L~aLgqIA~~aP~-------vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~AL 248 (1125)
..|...+ . -.....+|+.+..-.+. ++.+.+..|-..++..|=...............-.++..+.+..|+
T Consensus 749 ~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa 828 (897)
T PRK13800 749 GAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAA 828 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHH
Confidence 2344333 1 12334455555433221 1112223333333332211110000000000000001123345555
Q ss_pred HHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHhhcc
Q 001196 249 KTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTP 328 (1125)
Q Consensus 249 K~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lv 328 (1125)
..|... + . ...+..++.+|. + .-..+|..|+.+|-++ ..++.....|...+
T Consensus 829 ~aL~~l--~--~---~~a~~~L~~~L~----D------------~~~~VR~~A~~aL~~~------~~~~~a~~~L~~al 879 (897)
T PRK13800 829 RALAGA--A--A---DVAVPALVEALT----D------------PHLDVRKAAVLALTRW------PGDPAARDALTTAL 879 (897)
T ss_pred HHHHhc--c--c---cchHHHHHHHhc----C------------CCHHHHHHHHHHHhcc------CCCHHHHHHHHHHH
Confidence 555321 1 1 112233333332 1 1135999999999886 22445555566788
Q ss_pred cCCchhHHHHHHHHH
Q 001196 329 EISFPQAKKLFLSKV 343 (1125)
Q Consensus 329 QD~~~eVR~~Fl~KL 343 (1125)
+|+...||+.-..-|
T Consensus 880 ~D~d~~Vr~~A~~aL 894 (897)
T PRK13800 880 TDSDADVRAYARRAL 894 (897)
T ss_pred hCCCHHHHHHHHHHH
Confidence 899999999876554
No 105
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=31.08 E-value=8.5e+02 Score=27.83 Aligned_cols=173 Identities=15% Similarity=0.123 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHHHh-ccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHH
Q 001196 33 YDFLSTLSMKCSYLLFNKEHVKEILLEVAA-QKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEG 111 (1125)
Q Consensus 33 ~etlk~LL~RsS~lifNkShV~~LL~~vs~-~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~ 111 (1125)
+..+..+|.++...+-+--++..|++.+.. .....+......|++.|-.++-..+.+-..+..-+...+..+++.+...
T Consensus 4 L~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~ 83 (298)
T PF12719_consen 4 LSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKIT 83 (298)
T ss_pred HHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 445667777777444444555566655431 2222333566889999999999999999999998998887667778888
Q ss_pred HHHHHHHh----ccchhhhhc-----ccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhh-h
Q 001196 112 ILHVLAKA----GGTIREQLA-----ATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDML-E 181 (1125)
Q Consensus 112 aLkaLAk~----gk~i~e~~~-----~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~L-e 181 (1125)
+|+++.-+ |..+-.... .....+...|.++-....+.---.|+..|+.+.-......-..++..|+-.+ +
T Consensus 84 al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~ 163 (298)
T PF12719_consen 84 ALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFN 163 (298)
T ss_pred HHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 89988843 322111111 1234577777777666665533345555544332222111134555665432 2
Q ss_pred cCC-CCchHHHHHHHHHhhcccccc
Q 001196 182 EKT-HLPAVLQSLGCIAQTAMPVFE 205 (1125)
Q Consensus 182 ~~s-~l~T~L~aLgqIA~~aP~vfe 205 (1125)
... .-...-|+|+.++...+..=.
T Consensus 164 p~t~~~~~LrQ~L~~Ffp~y~~s~~ 188 (298)
T PF12719_consen 164 PSTEDNQRLRQCLSVFFPVYASSSP 188 (298)
T ss_pred cccCCcHHHHHHHHHHHHHHHcCCH
Confidence 332 434566777777777665443
No 106
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=29.51 E-value=1.5e+03 Score=30.40 Aligned_cols=195 Identities=16% Similarity=0.133 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcc----cCCCCCH
Q 001196 243 LKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ----WDHKIPV 318 (1125)
Q Consensus 243 aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~----~d~~Itp 318 (1125)
.|+.|+++++-|| +.....+....+++.|..+... +..+---|=.-|-+.+.|+=.. -...|.|
T Consensus 507 ~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~---------~s~evl~llmE~Ls~vv~~dpef~as~~skI~P 574 (1005)
T KOG2274|consen 507 VKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASK---------SSDEVLVLLMEALSSVVKLDPEFAASMESKICP 574 (1005)
T ss_pred hhHHHHHHHHhcc---CceeccccchHHHHHHHHHccc---------ccHHHHHHHHHHHHHHhccChhhhhhhhcchhH
Confidence 4788999999888 2222334444566666665411 1122222333344445554332 1678888
Q ss_pred HHHHHHhhcccCCchhHHHH----HHHHHHHhHhcCCCchhHHHHH----HhhhcCCCCchhHHHHHHHHHHHHHHHHHH
Q 001196 319 DVFHLTLRTPEISFPQAKKL----FLSKVHQYVKDRLLDAKYACAF----LFGITESKSPEFEEEKQNLADIIQMHHQMK 390 (1125)
Q Consensus 319 ~~F~~La~lvQD~~~eVR~~----Fl~KL~k~L~~~~Lp~RF~alf----fL~A~e~~epe~~~~K~~L~~~I~~~~~sr 390 (1125)
..+...+-...|| +|-.. |-.-+|...-.|..-.|+.+-| -+.+--.+.+.-+.+ .+++. ..
T Consensus 575 ~~i~lF~k~s~DP--~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~a----idvLt----tv 644 (1005)
T KOG2274|consen 575 LTINLFLKYSEDP--QVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIA----IDVLT----TV 644 (1005)
T ss_pred HHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHH----HHHHH----HH
Confidence 7777776677777 44433 4443443333455556666522 222200111111111 22221 12
Q ss_pred HhhhccccccccccccchhhHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHHHHHHHH----hhcc-Cccccccccccch
Q 001196 391 ARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSM----LIHK-DEDVKSEASNKES 465 (1125)
Q Consensus 391 ~R~~s~~s~~~~~~~~pEyvLpyLIHLLAHH~~Pdf~~~~d~~al~~~~~yL~FyLe~----La~~-~e~~~~~~~~~eN 465 (1125)
.|..+. .++..+-+|+||=++-...|- +|-+.++....||-.|++. +++- +|+ +-|
T Consensus 645 vr~tp~----pL~~~l~~~~FpaVak~tlHs--------dD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~-------g~~ 705 (1005)
T KOG2274|consen 645 LRNTPS----PLPNLLICYAFPAVAKITLHS--------DDHETLQNATECLRALISVTLEQLLTWHDEP-------GHN 705 (1005)
T ss_pred HhcCCC----CccHHHHHHHhHHhHhheeec--------CChHHHHhHHHHHHHHHhcCHHHHHhhccCC-------Ccc
Confidence 332222 245777899999999999887 2556677778888888887 7764 333 367
Q ss_pred HHHHHHHHHHhhcccC
Q 001196 466 ISVIISIFRSIKCSED 481 (1125)
Q Consensus 466 iSlLy~La~rIKq~rD 481 (1125)
++||++-+-|--|
T Consensus 706 ---~~yImqV~sqLLd 718 (1005)
T KOG2274|consen 706 ---LWYIMQVLSQLLD 718 (1005)
T ss_pred ---HHHHHHHHHHHcC
Confidence 4455444444444
No 107
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=28.51 E-value=1.5e+03 Score=30.19 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhccC--Cc--------HHHHHHHHHHHhcccccC---HHHHHHHHHHH
Q 001196 16 PVLQDDLLKILGAK--HR--------LYDFLSTLSMKCSYLLFN---KEHVKEILLEV 60 (1125)
Q Consensus 16 ~~ar~ELLKRLg~k--~~--------l~etlk~LL~RsS~lifN---kShV~~LL~~v 60 (1125)
..+.+.|||-|++- +. .-..+.+|..||-.+-|. .+.|..+|..+
T Consensus 134 ~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~i 191 (824)
T PRK07764 134 PQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERI 191 (824)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHH
Confidence 35568899999872 21 233556777888766664 44444444443
No 108
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=28.30 E-value=1.4e+02 Score=37.16 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=12.2
Q ss_pred cccccCCCCCcccccCCCCCCCC
Q 001196 1020 EVDKMDSEEKPAEEVGSVPQDEK 1042 (1125)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1125)
+++..+|++. +.|-|-.||-.+
T Consensus 293 e~~E~DYdee-~addEE~Peik~ 314 (555)
T KOG2393|consen 293 EGRELDYDEE-SADDEEAPEIKG 314 (555)
T ss_pred cccccccccc-cCCccccccccc
Confidence 4445566666 555555565544
No 109
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=28.17 E-value=1.1e+03 Score=28.26 Aligned_cols=277 Identities=11% Similarity=0.087 Sum_probs=117.1
Q ss_pred CCcHHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHH----hhc
Q 001196 29 KHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLL----KEE 104 (1125)
Q Consensus 29 k~~l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL----~d~ 104 (1125)
..|+++.++.+.....-...|.+++..+++.+.. .+.=+--..+.--|..|.+|....+..+ .-.
T Consensus 26 ~~pll~l~~~~~~~i~~~~~~~~~l~~~~~~l~l-----------ilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~ 94 (370)
T PF08506_consen 26 AEPLLELFKQTDQLIEANANNAASLKVLFEMLKL-----------ILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYP 94 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHH-----------HHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----------HHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCC
Confidence 3456666666666655566666666665552110 0111111122334555555543333222 211
Q ss_pred cc--------------hhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhc-C-C---hHHHHHHHHHHHhhcCCCc
Q 001196 105 NE--------------IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLE-G-S---RRQAKYAVHALAAITKDDG 165 (1125)
Q Consensus 105 n~--------------~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAle-G-T---PrqAKyAVr~LaAls~d~~ 165 (1125)
++ .+...++.++..+..++.+.+.+.-..|+...-++... | . -.-+-.|++.|.+++....
T Consensus 95 ~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~ 174 (370)
T PF08506_consen 95 NPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPH 174 (370)
T ss_dssp SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHH
T ss_pred CcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchh
Confidence 11 23445566666666555554433333444444444432 1 1 1334567777766554422
Q ss_pred c-------chHHHHHHHHH-Hhh----------hc-----------CCCCchHHHHHHHHHhhccccccchhHHHHHHHH
Q 001196 166 L-------KSLSVLYKRLV-DML----------EE-----------KTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIK 216 (1125)
Q Consensus 166 ~-------~~ls~L~e~Lv-~~L----------e~-----------~s~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIi 216 (1125)
. ..+..|++.++ +.| +. ++.+-|.=.|=..+.+....-|......|+...+
T Consensus 175 ~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i 254 (370)
T PF08506_consen 175 HKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYI 254 (370)
T ss_dssp HHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 23455555543 332 11 1223332222233333333456666566665556
Q ss_pred HhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcc-cc----cccchHHHHHHHHHhhhcCCCcCCcCCCh
Q 001196 217 SKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKD-AH----IRPGIDDLLGILKSMLSYGEMSEDIESSS 291 (1125)
Q Consensus 217 K~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~-~~----~~~~~~~llkLL~~ll~~GEL~~~~~tp~ 291 (1125)
+.+|..-.. +....| ..|-.||.+++-....... .. ....+ .+...+.+.+ ..||..+.
T Consensus 255 ~~~l~~y~~---~~~~~w-------~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v-~v~~Ff~~~v-~peL~~~~---- 318 (370)
T PF08506_consen 255 QQLLQQYAS---NPSNNW-------RSKDGALYLIGALASKGSTTKSGVTQTNELV-DVVDFFSQHV-LPELQPDV---- 318 (370)
T ss_dssp HHHHHHHHH----TTT-H-------HHHHHHHHHHHHHHBSS--BTTB-S-B-TTS--HHHHHHHHT-CHHHH-SS----
T ss_pred HHHHHHHhh---CCcccH-------HHHHHHHHHHHHHHhhhccccCCcccccccc-cHHHHHHHHh-HHHhcccC----
Confidence 667753111 011223 4566677765543322211 11 11112 2455555543 22333111
Q ss_pred hhHhhHHHHHHHHHHhhhcccCCCCCHHH----HHHHhhcccCCchhHH
Q 001196 292 VDKAHLRLASAKAVLRLSRQWDHKIPVDV----FHLTLRTPEISFPQAK 336 (1125)
Q Consensus 292 ~~kArLRLaAa~sLLKLAr~~d~~Itp~~----F~~La~lvQD~~~eVR 336 (1125)
.....||..|-+.+..- ..++++++ |..++..++++.+-|+
T Consensus 319 ~~~piLka~aik~~~~F----r~~l~~~~l~~~~~~l~~~L~~~~~vv~ 363 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTF----RNQLPKEQLLQIFPLLVNHLQSSSYVVH 363 (370)
T ss_dssp -S-HHHHHHHHHHHHHH----GGGS-HHHHHHHHHHHHHHTTSS-HHHH
T ss_pred CCCcchHHHHHHHHHHH----HhhCCHHHHHHHHHHHHHHhCCCCcchh
Confidence 22456776665554444 44455554 4444556666666665
No 110
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=27.32 E-value=1.9e+03 Score=31.90 Aligned_cols=318 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred CccccHHHHHHHHhh-----ccchhHHHHHHHHH---HhccchhhhhcccChhHHHHHHHHhhcCChHHHHH----HHHH
Q 001196 89 LLGGTEEELVNLLKE-----ENEIIKEGILHVLA---KAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY----AVHA 156 (1125)
Q Consensus 89 LFk~~v~~L~~lL~d-----~n~~vve~aLkaLA---k~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKy----AVr~ 156 (1125)
||...=..++..|.- +|+.++..+|..+- +++..+. +......|+..|.+|+.-++|...|. |+++
T Consensus 875 mfe~~W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~--l~~~rdafv~~L~kfT~L~~~~emk~Knv~Aik~ 952 (1780)
T PLN03076 875 MVEVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMS--MKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKA 952 (1780)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHcCCCChhhhhHHHHHHHHH
Q ss_pred HHhhcCCCccchHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhc-------cc---------------------------
Q 001196 157 LAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTA-------MP--------------------------- 202 (1125)
Q Consensus 157 LaAls~d~~~~~ls~L~e~Lv~~Le~~s~l~T~L~aLgqIA~~a-------P~--------------------------- 202 (1125)
|..++...+. ++.+ .+-.+|.++++|-++. |+
T Consensus 953 ll~ia~~~Gn-~L~~-------------sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~ 1018 (1780)
T PLN03076 953 IVSIADEDGN-YLQE-------------AWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPVLKR 1018 (1780)
T ss_pred HHHHHHHhhh-HHHh-------------HHHHHHHHHHHHHHHHHhhcCCCcchhhhccccccccccccccccccccccc
Q ss_pred ---------------------------cccchhHHHHHH-------------HHHhhhcccCCCCCCCCCCC----CCCc
Q 001196 203 ---------------------------VFETRESEIEEF-------------IKSKILRCSNKIRNDTKACW----DDRS 238 (1125)
Q Consensus 203 ---------------------------vfe~~~~eI~~f-------------IiK~LLl~~~~~~~~~~~eW----~~~S 238 (1125)
......++|... .|.+|+.....-..+.-... |..|
T Consensus 1019 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~~vS 1098 (1780)
T PLN03076 1019 KGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALCKVS 1098 (1780)
T ss_pred ccccccchhhhhhcccccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHHHhh
Q ss_pred HHHH-----HHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhccc-
Q 001196 239 ELCL-----LKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW- 312 (1125)
Q Consensus 239 e~~~-----aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~- 312 (1125)
.+.. -++++|.-||--+...-+ ..+-.-..+|.+|......- +.+.-..+++-|-.+|-+||-.+
T Consensus 1099 ~eEl~~~~~pr~FsLqKLveIa~~Nm~-Rirl~W~~iW~~l~~hf~~v--------g~~~n~~va~fAidsLrQLs~kfl 1169 (1780)
T PLN03076 1099 MEELRSPSDPRVFSLTKIVEIAHYNMN-RIRLVWSSIWHVLSDFFVTI--------GCSENLSIAIFAMDSLRQLSMKFL 1169 (1780)
T ss_pred HHHHccCCCCchhHHHHHHHHHHhccc-chheehHhHHHHHHHHHHHh--------cCCcchhHHHHHHHHHHHHHHHhc
Q ss_pred ------CCCCCHHHHHHHh-hcccCCchhHHHHHHHHHHHhHhcCC--CchhHHHHHHh---hhcCCCCchhHHHHHHHH
Q 001196 313 ------DHKIPVDVFHLTL-RTPEISFPQAKKLFLSKVHQYVKDRL--LDAKYACAFLF---GITESKSPEFEEEKQNLA 380 (1125)
Q Consensus 313 ------d~~Itp~~F~~La-~lvQD~~~eVR~~Fl~KL~k~L~~~~--Lp~RF~alffL---~A~e~~epe~~~~K~~L~ 380 (1125)
+..+.-+...-+- .+..-...+||..-+..|.+.+...- |..-|=++|-+ +|.+.++..-..+.+.+.
T Consensus 1170 e~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~ 1249 (1780)
T PLN03076 1170 EREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIE 1249 (1780)
T ss_pred chhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhccccccccccccch---hhHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 001196 381 DIIQMHHQMKARQISVQSDANSFATYPE---YIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVS 447 (1125)
Q Consensus 381 ~~I~~~~~sr~R~~s~~s~~~~~~~~pE---yvLpyLIHLLAHH~~Pdf~~~~d~~al~~~~~yL~FyLe 447 (1125)
.++..+- ..+|+ ..|..+|..|..-....+...-.+.++..++.+..++++
T Consensus 1250 ~I~~d~f----------------~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~ 1303 (1780)
T PLN03076 1250 KIIREYF----------------PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAE 1303 (1780)
T ss_pred HHHHhhh----------------hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHh
No 111
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=27.28 E-value=6.8e+02 Score=31.82 Aligned_cols=72 Identities=17% Similarity=0.058 Sum_probs=41.7
Q ss_pred ccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccc-hhHHHHHHHHHHhcc
Q 001196 45 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENE-IIKEGILHVLAKAGG 121 (1125)
Q Consensus 45 ~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~-~vve~aLkaLAk~gk 121 (1125)
|-.++ -|+|.|+-++..+ .+ .......-+...|++..|.++..++..|+..|.+.+. .+.-.+|+.+|.+++
T Consensus 194 P~~i~-PhlP~l~~lL~q~---~p-~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~p 266 (851)
T KOG3723|consen 194 PQPIN-PHLPELLALLSQL---EP-EQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEP 266 (851)
T ss_pred CCccC-cccHHHHHHhcCC---CH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCc
Confidence 43343 2677776655543 11 1122334455677888888888888888877776433 234455666666654
No 112
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.25 E-value=36 Score=44.13 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=12.9
Q ss_pred HHHHHHHHhhcCCh---HHHHHHHHHHH
Q 001196 134 VDLLLERLCLEGSR---RQAKYAVHALA 158 (1125)
Q Consensus 134 l~~~L~~lAleGTP---rqAKyAVr~La 158 (1125)
+..++++.|...-- ...|||+-+|-
T Consensus 422 ~q~~mervc~~p~~v~~~vv~~~~~l~~ 449 (1516)
T KOG1832|consen 422 LQGIMERVCALPLVVIHQVVKLAIELLD 449 (1516)
T ss_pred hhhHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 45556666654321 23466666554
No 113
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=26.85 E-value=1.2e+03 Score=28.08 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=60.3
Q ss_pred HHHHHHHHHHH-hcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCcccc--HHHHHHHHhhccchh
Q 001196 32 LYDFLSTLSMK-CSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGT--EEELVNLLKEENEII 108 (1125)
Q Consensus 32 l~etlk~LL~R-sS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~--v~~L~~lL~d~n~~v 108 (1125)
.+.+++.++.- ..+-.|.+.-|.+|+. +... ..+.+...|++.|.+|+-.+|.++..+ +..|...+.+....+
T Consensus 88 ALkliR~~l~~~~~~~~~~~~vvralva-iae~---~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~ 163 (371)
T PF14664_consen 88 ALKLIRAFLEIKKGPKEIPRGVVRALVA-IAEH---EDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSI 163 (371)
T ss_pred HHHHHHHHHHhcCCcccCCHHHHHHHHH-HHhC---CchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhH
Confidence 45666666655 3456678999999988 4433 345788999999999999999998665 588888888744335
Q ss_pred HHHHHHHHHHh
Q 001196 109 KEGILHVLAKA 119 (1125)
Q Consensus 109 ve~aLkaLAk~ 119 (1125)
.+.++.++-++
T Consensus 164 ~~~l~~~lL~l 174 (371)
T PF14664_consen 164 SESLLDTLLYL 174 (371)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 114
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=26.44 E-value=1.3e+03 Score=28.40 Aligned_cols=233 Identities=15% Similarity=0.186 Sum_probs=111.9
Q ss_pred CcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhh--ccc---h---hHHHHHHHHHHhccc-hhhhhcccChhHH
Q 001196 65 SSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKE--ENE---I---IKEGILHVLAKAGGT-IREQLAATSSSVD 135 (1125)
Q Consensus 65 s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d--~n~---~---vve~aLkaLAk~gk~-i~e~~~~~~s~l~ 135 (1125)
+.+|+-....-+++|..+....-.+....+..|+.+|.. .|+ . -.-++|-+|-++... -++........+.
T Consensus 40 s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~ 119 (435)
T PF03378_consen 40 SAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALF 119 (435)
T ss_dssp STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHH
T ss_pred CccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHH
Confidence 344555556666666665555444444445666666654 333 1 122344444333221 1111112233344
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHh------hhcCCCCchHHHHHHHHHhhcccccc--ch
Q 001196 136 LLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDM------LEEKTHLPAVLQSLGCIAQTAMPVFE--TR 207 (1125)
Q Consensus 136 ~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~------Le~~s~l~T~L~aLgqIA~~aP~vfe--~~ 207 (1125)
+.+...=...--.-.=|+..+|+.+........+.+.+..|... |+...|.|+...-|..+.+.+|..+. .+
T Consensus 120 P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~ 199 (435)
T PF03378_consen 120 PPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQ 199 (435)
T ss_dssp HHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhh
Confidence 44443322222233446667766554332211123334444443 33334888888888888888988884 24
Q ss_pred hHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCc
Q 001196 208 ESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDI 287 (1125)
Q Consensus 208 ~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~ 287 (1125)
-..|.... +++|..... + .+|..+|-.-+..+..+...+....+|.+|.+-++..
T Consensus 200 l~~iLgvF-QkLi~sk~~--D----------------~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~s------ 254 (435)
T PF03378_consen 200 LEPILGVF-QKLIASKAN--D----------------HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSS------ 254 (435)
T ss_dssp CHHHHHHH-HHHHT-TTC--H----------------HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHH-HHHHCCCCc--c----------------hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC------
Confidence 45555443 455543221 1 4688877777776665555677888888888776332
Q ss_pred CCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHhhcccCC
Q 001196 288 ESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEIS 331 (1125)
Q Consensus 288 ~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lvQD~ 331 (1125)
+| .+-.-|+.--.+++=+ .+ .|+.+..++.-+|..
T Consensus 255 kT---~kf~~~fv~F~~~~~~--~~----g~~~li~~id~IQ~g 289 (435)
T PF03378_consen 255 KT---EKFVKRFVVFLSLFAI--KY----GPDFLIQTIDSIQPG 289 (435)
T ss_dssp -----HHHHHHHHHHHHHHHH--HH-----HHHHHHHHHTTSTT
T ss_pred Cc---HHHHHHHHHHHHHHHH--Hc----CHHHHHHHHHHhcCC
Confidence 22 3333333322222111 11 666677666667754
No 115
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=26.31 E-value=1.3e+02 Score=36.87 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=30.2
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCC------CeeEEEec
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIK------KKHVILYD 861 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~------~kH~V~Yd 861 (1125)
-||.+|.++|..|..||.++|....... ...-|.|.
T Consensus 55 ~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~ 96 (450)
T PLN00104 55 EVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYT 96 (450)
T ss_pred ccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEe
Confidence 4999999999999999999999998633 34677775
No 116
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=24.94 E-value=1.6e+02 Score=39.98 Aligned_cols=17 Identities=35% Similarity=0.804 Sum_probs=13.6
Q ss_pred cccchhhHHHHHhhhcC
Q 001196 404 ATYPEYIIPYLVHTFAH 420 (1125)
Q Consensus 404 ~~~pEyvLpyLIHLLAH 420 (1125)
..+|||+||.|=||+--
T Consensus 502 niF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLND 518 (1431)
T ss_pred hhhHhhhhhhhHhhhcc
Confidence 67888888888888755
No 117
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=24.87 E-value=6e+02 Score=32.32 Aligned_cols=125 Identities=16% Similarity=0.147 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHhhCCc-CccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHH
Q 001196 71 FMQSCMDILGILARFSPL-LLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQ 149 (1125)
Q Consensus 71 ~~~~AleLL~~IS~~~P~-LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrq 149 (1125)
....|.+....|-..+|. --+.-+..|+.-|.+........+|+.|.-.+.-.+.++......+++.|..-...--|.-
T Consensus 232 Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~ev 311 (569)
T KOG1242|consen 232 VREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEV 311 (569)
T ss_pred hhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHH
Confidence 445555556555554443 3333345555545544444444555555433322333555555667777777776666888
Q ss_pred HHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC-CCchHHHHHHH
Q 001196 150 AKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HLPAVLQSLGC 195 (1125)
Q Consensus 150 AKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s-~l~T~L~aLgq 195 (1125)
.|.|+.||..++.--+..-..-++..|++.|..-. ..+..+.+|+.
T Consensus 312 r~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ 358 (569)
T KOG1242|consen 312 RKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGA 358 (569)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcc
Confidence 88888888655433222224457788888777666 78888888775
No 118
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=24.73 E-value=1e+03 Score=27.77 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhh------CCcCccccHHHHHHHHhhcc
Q 001196 32 LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARF------SPLLLGGTEEELVNLLKEEN 105 (1125)
Q Consensus 32 l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~------~P~LFk~~v~~L~~lL~d~n 105 (1125)
+-.++..|..+..+-.+. .+..+|+..+.++...+.......|.++|..++-. ...+|......|..+|.+..
T Consensus 64 L~~l~~~l~~~~~~d~v~-~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s 142 (309)
T PF05004_consen 64 LEALIRALSSRYLPDFVE-DRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSS 142 (309)
T ss_pred HHHHHHHHHhcccHHHHH-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCc
Confidence 455555555665554443 55566777665543322223445566666665554 45677777788888888854
No 119
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.40 E-value=7.1e+02 Score=32.55 Aligned_cols=151 Identities=20% Similarity=0.191 Sum_probs=84.5
Q ss_pred HHHhcccccCH-HHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHH----HHHHHHhhc----------
Q 001196 40 SMKCSYLLFNK-EHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEE----ELVNLLKEE---------- 104 (1125)
Q Consensus 40 L~RsS~lifNk-ShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~----~L~~lL~d~---------- 104 (1125)
|+|.+|=++|. +-+.-++..+.. .+-+...++..|+..|++.+|.-|++++. .|..+....
T Consensus 175 L~r~spDl~~~~~W~~riv~LL~D----~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy 250 (938)
T KOG1077|consen 175 LFRKSPDLVNPGEWAQRIVHLLDD----QHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYY 250 (938)
T ss_pred HHhcCccccChhhHHHHHHHHhCc----cccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceee
Confidence 45667777776 555555443322 22355677889999999999999999963 333322221
Q ss_pred ---cchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCC---------hHHHHHHHHH----HHhhcCCCccch
Q 001196 105 ---NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS---------RRQAKYAVHA----LAAITKDDGLKS 168 (1125)
Q Consensus 105 ---n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGT---------PrqAKyAVr~----LaAls~d~~~~~ 168 (1125)
.+=+...+|++|..+.. +..++....+.+.|+++-..-. -.-||.||-. |+ +--|.+...
T Consensus 251 ~vP~PWL~vKl~rlLq~~p~---~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~-~h~D~e~~l 326 (938)
T KOG1077|consen 251 FVPAPWLQVKLLRLLQIYPT---PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA-IHLDSEPEL 326 (938)
T ss_pred cCCChHHHHHHHHHHHhCCC---CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH-HHcCCcHHH
Confidence 11234566777776631 1233444556777776433211 1446777644 22 233444333
Q ss_pred HHHHHHHHHHhhhcCC---CCchHHHHHHHHHhh
Q 001196 169 LSVLYKRLVDMLEEKT---HLPAVLQSLGCIAQT 199 (1125)
Q Consensus 169 ls~L~e~Lv~~Le~~s---~l~T~L~aLgqIA~~ 199 (1125)
++.-+..|...|.... ++++ |.++..++-.
T Consensus 327 l~~~~~~Lg~fls~rE~NiRYLa-LEsm~~L~ss 359 (938)
T KOG1077|consen 327 LSRAVNQLGQFLSHRETNIRYLA-LESMCKLASS 359 (938)
T ss_pred HHHHHHHHHHHhhcccccchhhh-HHHHHHHHhc
Confidence 4455666666665442 5555 6666666654
No 120
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=23.28 E-value=2.6e+02 Score=36.12 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=38.6
Q ss_pred HHhhCCcCccccHHHH-HHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCCh
Q 001196 82 LARFSPLLLGGTEEEL-VNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSR 147 (1125)
Q Consensus 82 IS~~~P~LFk~~v~~L-~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTP 147 (1125)
+.+..|.-|+.++-.| ...+++.+..+-+.+|+++..+...+. +......+.++|.++|..-|.
T Consensus 378 ~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 378 KEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred HhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccc
Confidence 3556666666665333 344555555566777777777665543 333466677777777776554
No 121
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.27 E-value=8e+02 Score=31.32 Aligned_cols=127 Identities=17% Similarity=0.206 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHhhCCcCccccH----HHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCC
Q 001196 71 FMQSCMDILGILARFSPLLLGGTE----EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS 146 (1125)
Q Consensus 71 ~~~~AleLL~~IS~~~P~LFk~~v----~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGT 146 (1125)
..-.+++++..+=..+|.-.-.|. ..|.+.|.+..+.++..+|-.||+++.. ++.+...+.+...|+-|..+-.
T Consensus 352 tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s--~~~~~~~~fl~sLL~~f~e~~~ 429 (675)
T KOG0212|consen 352 TRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS--SNSPNLRKFLLSLLEMFKEDTK 429 (675)
T ss_pred HHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC--cccccHHHHHHHHHHHHhhhhH
Confidence 334577888888888887666664 5666777777777888999999988643 1222334555666666766443
Q ss_pred h--HHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC--CCc-hHHHHHHHHHhhcccccc
Q 001196 147 R--RQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLP-AVLQSLGCIAQTAMPVFE 205 (1125)
Q Consensus 147 P--rqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s--~l~-T~L~aLgqIA~~aP~vfe 205 (1125)
- .-+-+-+|-|..+.. . .-++..++.-|+... .|+ +-.++|.-|...+|+.|.
T Consensus 430 ~l~~Rg~lIIRqlC~lL~-a-----E~IYr~~a~ILe~e~nl~FAstMV~~Ln~iLlTStELf~ 487 (675)
T KOG0212|consen 430 LLEVRGNLIIRQLCLLLN-A-----ERIYRSIADILEREENLKFASTMVQALNTILLTSTELFQ 487 (675)
T ss_pred HHHhhhhHHHHHHHHHhC-H-----HHHHHHHHHHHhccccchHHHHHHHHHHhhhcccHHHHH
Confidence 2 223344554543222 2 235556655555332 554 578899999999999995
No 122
>PF14711 Nitr_red_bet_C: Respiratory nitrate reductase beta C-terminal; PDB: 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B 1Y4Z_B 1Y5L_B 3IR6_B 3IR5_B ....
Probab=21.02 E-value=2.1e+02 Score=27.42 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=22.0
Q ss_pred HhcCCCchhHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHH
Q 001196 347 VKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHH 387 (1125)
Q Consensus 347 L~~~~Lp~RF~alffL~A~e~~epe~~~~K~~L~~~I~~~~ 387 (1125)
+..-|||++|++=+|-+..+ +-++.-|+..+.+|.
T Consensus 25 id~lRIPi~YLAnLftAGd~------~~V~~~L~rL~AmR~ 59 (83)
T PF14711_consen 25 IDSLRIPIEYLANLFTAGDE------EPVRRALKRLLAMRS 59 (83)
T ss_dssp GGGBSS-HHHHHHHHSTT-H------HHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHccCCh------HHHHHHHHHHHHHHH
Confidence 45678999999977754421 345566677776643
No 123
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=20.92 E-value=5.1e+02 Score=36.56 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=51.9
Q ss_pred cCCcHHHHHHHHHHHhcccccCH----HHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhh
Q 001196 28 AKHRLYDFLSTLSMKCSYLLFNK----EHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKE 103 (1125)
Q Consensus 28 ~k~~l~etlk~LL~RsS~lifNk----ShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d 103 (1125)
+..+.+--+-.++|+..+..|+. +-|..|+..+.. ++...+..|+++|..++..+|..+..+..-|..+|..
T Consensus 446 S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~s----g~~~ev~~aL~vL~~L~~~~~~~l~~fa~~l~giLD~ 521 (1426)
T PF14631_consen 446 SKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGS----GNSQEVDAALDVLCELAEKNPSELQPFATFLKGILDY 521 (1426)
T ss_dssp SSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HHHHHHTHHHHHGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34555555778899999999975 555566555432 4566788999999999999999999998777777755
No 124
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=20.78 E-value=5.5e+02 Score=33.47 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=80.7
Q ss_pred HHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCC--------hHHHHHHHHHHHhhcCCCccch-------------
Q 001196 110 EGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS--------RRQAKYAVHALAAITKDDGLKS------------- 168 (1125)
Q Consensus 110 e~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGT--------PrqAKyAVr~LaAls~d~~~~~------------- 168 (1125)
...|+|+|++|..+|..++. ..-|-.+..+.|.... ..+-|-|+-++- .+.+..+..
T Consensus 641 vAl~~IMAQIGc~IPA~YaS-~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq-~a~~~SLiVlDELgR~TSteeG 718 (867)
T KOG0220|consen 641 VALCQIMAQIGSYVPAEYAS-FRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQ-NANKNSLIVLDELGRGTSTEEG 718 (867)
T ss_pred HHHHHHHHHhccCcchhhcc-chHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHH-hCCcCcEEEEhhhccCCccccc
Confidence 35688999999998866542 2234444444444221 234455655554 333222111
Q ss_pred ---HHHHHHHHHHhhhcCCCCchHHHHHHHHHhhcccc----ccch-hHHHHHHHHHhhhcccCCCCCCCCCC-----CC
Q 001196 169 ---LSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPV----FETR-ESEIEEFIKSKILRCSNKIRNDTKAC-----WD 235 (1125)
Q Consensus 169 ---ls~L~e~Lv~~Le~~s~l~T~L~aLgqIA~~aP~v----fe~~-~~eI~~fIiK~LLl~~~~~~~~~~~e-----W~ 235 (1125)
.=.+|+.|+. |..-.-|+||+..|+.||-+.|.+ |..+ .+.=..+. |..|.+-...+...+-+ .+
T Consensus 719 iaityAvCE~lL~-LkayTflATHFldIa~lan~~paVdnlHF~~q~~eNssk~~-k~kLsrg~~~~~~yG~~~vE~s~i 796 (867)
T KOG0220|consen 719 IAITYAVCEYLLS-LKAYTFLATHFLDIAAIANYYPAVDNLHFLVQTDENSSKNK-KYKLSRGLTEEKNYGLKAAEVSSL 796 (867)
T ss_pred hhhHHHHHHHHHH-hhHhHHHHHHHHHHHHHhhcCccccceeeeeeecccchhhh-hhhhhhhhhhcccccceEEEEecC
Confidence 1123555533 333338899999999999999987 4433 22222322 23333333333333221 23
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCCcc
Q 001196 236 DRSELCLLKIYGIKTLVKSYLPVKD 260 (1125)
Q Consensus 236 ~~Se~~~aKI~ALK~LvN~Lla~~~ 260 (1125)
+++-.+.++-++.-+.+|..-.-.+
T Consensus 797 Pd~i~e~a~~~~t~i~A~v~~~~rd 821 (867)
T KOG0220|consen 797 PDSIVEDAKEITTQITAQILQNQRD 821 (867)
T ss_pred CHHHHHhhhHHHHHHHHHHHhhccC
Confidence 4555788899999998888765554
No 125
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=20.36 E-value=7.1e+02 Score=33.02 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=9.3
Q ss_pred ccchhHHHHHHHHHHhc
Q 001196 104 ENEIIKEGILHVLAKAG 120 (1125)
Q Consensus 104 ~n~~vve~aLkaLAk~g 120 (1125)
++-.+-+.+|..|++++
T Consensus 194 EgI~id~eAL~lIA~~A 210 (830)
T PRK07003 194 ERIAFEPQALRLLARAA 210 (830)
T ss_pred cCCCCCHHHHHHHHHHc
Confidence 33334456677766553
Done!