Query 001196
Match_columns 1125
No_of_seqs 255 out of 389
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:55:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 97.8 0.017 5.8E-07 74.4 34.9 235 20-277 51-304 (1230)
2 4fdd_A Transportin-1; heat rep 97.7 0.016 5.5E-07 71.7 32.1 262 68-346 103-386 (852)
3 4fdd_A Transportin-1; heat rep 97.7 0.0069 2.3E-07 75.0 27.3 312 6-345 79-426 (852)
4 1ibr_B P95, importin beta-1 su 97.5 0.038 1.3E-06 61.9 28.4 253 73-347 107-394 (462)
5 1ibr_B P95, importin beta-1 su 97.5 0.011 3.9E-07 66.2 23.1 312 7-347 80-436 (462)
6 2bpt_A Importin beta-1 subunit 97.4 0.37 1.3E-05 58.6 36.2 312 7-345 84-437 (861)
7 2bpt_A Importin beta-1 subunit 97.1 0.28 9.7E-06 59.7 32.1 257 69-347 109-397 (861)
8 1u6g_C TIP120 protein, CAND1; 97.0 0.057 2E-06 69.5 25.3 268 51-349 430-722 (1230)
9 1wa5_B Importin alpha subunit; 97.0 0.039 1.3E-06 64.3 21.3 297 20-349 90-413 (530)
10 1b3u_A Protein (protein phosph 96.9 0.07 2.4E-06 61.8 22.6 258 52-346 84-351 (588)
11 1qgr_A Protein (importin beta 96.9 0.19 6.4E-06 61.4 26.8 253 73-347 107-394 (876)
12 1w63_A Adapter-related protein 96.9 0.06 2E-06 64.9 22.2 233 69-338 327-567 (618)
13 2equ_A PHD finger protein 20-l 96.8 0.0021 7.2E-08 57.6 6.4 51 824-878 9-59 (74)
14 1mhn_A SurviVal motor neuron p 96.7 0.0028 9.5E-08 54.1 6.6 46 827-872 6-52 (59)
15 2vgl_B AP-2 complex subunit be 96.7 0.034 1.2E-06 66.5 18.6 128 70-205 297-426 (591)
16 2l8d_A Lamin-B receptor; DNA b 96.7 0.0032 1.1E-07 54.6 6.8 44 826-869 11-54 (66)
17 3p8d_A Medulloblastoma antigen 96.7 0.0034 1.2E-07 55.3 6.8 47 823-871 5-51 (67)
18 2dig_A Lamin-B receptor; tudor 96.6 0.0039 1.3E-07 54.2 6.8 44 826-869 14-57 (68)
19 2jdq_A Importin alpha-1 subuni 96.6 0.099 3.4E-06 58.5 20.4 264 51-347 64-346 (450)
20 4a4f_A SurviVal of motor neuro 96.6 0.0041 1.4E-07 54.0 6.6 47 826-872 10-57 (64)
21 2g3r_A Tumor suppressor P53-bi 96.5 0.0031 1.1E-07 60.9 6.0 46 823-869 3-48 (123)
22 3s6w_A Tudor domain-containing 96.5 0.0047 1.6E-07 51.6 6.4 46 827-872 4-50 (54)
23 3qii_A PHD finger protein 20; 96.4 0.0053 1.8E-07 56.3 6.8 47 823-871 20-66 (85)
24 1qgr_A Protein (importin beta 96.4 0.12 4.1E-06 63.1 20.9 250 73-338 582-861 (876)
25 4b8j_A Importin subunit alpha- 96.3 0.2 6.8E-06 58.2 20.9 262 50-345 73-355 (528)
26 1wa5_B Importin alpha subunit; 96.3 0.05 1.7E-06 63.4 15.9 227 51-311 173-413 (530)
27 2jdq_A Importin alpha-1 subuni 96.3 0.094 3.2E-06 58.7 17.4 228 50-311 106-348 (450)
28 1w63_A Adapter-related protein 96.2 0.13 4.5E-06 61.9 19.2 103 17-122 107-209 (618)
29 1g5v_A SurviVal motor neuron p 96.1 0.011 3.6E-07 54.8 7.1 48 825-872 11-59 (88)
30 1b3u_A Protein (protein phosph 96.1 0.1 3.5E-06 60.3 17.2 218 95-348 90-310 (588)
31 4b8j_A Importin subunit alpha- 96.1 0.042 1.4E-06 63.9 13.8 228 51-311 160-401 (528)
32 4hxt_A De novo protein OR329; 96.0 0.063 2.2E-06 55.0 13.1 220 92-341 2-234 (252)
33 2vgl_A Adaptor protein complex 96.0 0.54 1.8E-05 56.9 23.1 123 18-143 112-238 (621)
34 3tpo_A Importin subunit alpha- 95.9 0.66 2.2E-05 54.4 22.7 295 20-362 79-401 (529)
35 2ldm_A Uncharacterized protein 94.8 0.0015 5E-08 59.6 0.0 51 826-880 8-58 (81)
36 2d9t_A Tudor domain-containing 95.8 0.017 5.8E-07 52.1 6.8 47 825-871 10-57 (78)
37 2vgl_B AP-2 complex subunit be 95.7 0.71 2.4E-05 55.1 22.3 304 20-349 89-420 (591)
38 2eqj_A Metal-response element- 95.5 0.026 9E-07 49.3 6.7 46 825-871 14-59 (66)
39 1ssf_A Transformation related 95.4 0.02 6.7E-07 57.6 6.3 50 821-871 5-54 (156)
40 2vgl_A Adaptor protein complex 95.3 0.31 1.1E-05 59.0 17.8 252 77-350 96-360 (621)
41 4db8_A Armadillo-repeat protei 95.3 0.12 4.3E-06 53.3 12.5 178 20-201 15-212 (252)
42 3pnw_C Tudor domain-containing 95.2 0.036 1.2E-06 49.9 6.8 46 826-871 19-65 (77)
43 2z6g_A B-catenin; FULL-length, 95.1 0.79 2.7E-05 56.8 20.5 291 19-344 117-424 (780)
44 4hxt_A De novo protein OR329; 95.0 0.67 2.3E-05 47.2 16.5 146 51-200 44-201 (252)
45 2z6g_A B-catenin; FULL-length, 94.6 0.5 1.7E-05 58.6 17.1 144 52-201 116-266 (780)
46 3now_A UNC-45 protein, SD10334 94.4 1.2 4.3E-05 55.7 19.9 172 70-257 394-611 (810)
47 2qk1_A Protein STU2; STU2P, XM 94.3 0.32 1.1E-05 52.1 12.5 168 74-260 35-224 (249)
48 4db8_A Armadillo-repeat protei 94.0 0.37 1.3E-05 49.7 12.2 189 92-310 54-251 (252)
49 2qk2_A LP04448P; mini spindles 94.0 0.76 2.6E-05 47.9 14.5 143 72-218 32-184 (242)
50 4hcz_A PHD finger protein 1; p 93.9 0.14 4.7E-06 43.7 6.8 45 826-871 5-49 (58)
51 3ul1_B Importin subunit alpha- 93.7 0.81 2.8E-05 53.5 15.5 260 19-311 59-346 (510)
52 4db6_A Armadillo repeat protei 93.5 0.37 1.3E-05 48.4 10.8 196 86-310 5-209 (210)
53 2z6h_A Catenin beta-1, beta-ca 93.5 0.87 3E-05 54.6 15.8 114 88-201 10-130 (644)
54 2z6h_A Catenin beta-1, beta-ca 93.3 3.3 0.00011 49.6 20.3 262 48-344 11-288 (644)
55 1jdh_A Beta-catenin; beta-cate 93.3 1.2 4.3E-05 50.8 16.0 116 87-202 12-134 (529)
56 3fdr_A Tudor and KH domain-con 93.3 0.13 4.6E-06 47.3 6.4 47 825-872 28-75 (94)
57 2eqk_A Tudor domain-containing 92.6 0.2 6.7E-06 46.0 6.2 50 827-878 24-73 (85)
58 1jdh_A Beta-catenin; beta-cate 92.3 4.9 0.00017 45.9 19.0 261 49-344 15-291 (529)
59 2diq_A Tudor and KH domain-con 92.1 0.15 5E-06 48.4 5.1 47 825-872 33-80 (110)
60 3now_A UNC-45 protein, SD10334 91.8 2.1 7.3E-05 53.6 16.3 266 47-362 417-732 (810)
61 2xk0_A Polycomb protein PCL; t 91.5 0.65 2.2E-05 40.9 7.9 46 823-871 14-59 (69)
62 2m0o_A PHD finger protein 1; t 91.3 0.5 1.7E-05 42.3 7.1 48 823-871 25-72 (79)
63 3ul1_B Importin subunit alpha- 91.2 0.71 2.4E-05 54.0 10.7 263 52-347 144-429 (510)
64 2qk2_A LP04448P; mini spindles 91.1 2.3 7.8E-05 44.3 13.5 174 20-202 18-209 (242)
65 3ltj_A Alpharep-4; protein eng 90.7 5.4 0.00018 39.7 15.3 188 85-344 7-194 (201)
66 4db6_A Armadillo repeat protei 90.2 2.2 7.7E-05 42.6 12.0 111 49-163 52-168 (210)
67 1oyz_A Hypothetical protein YI 90.2 16 0.00054 38.3 19.2 193 93-346 24-219 (280)
68 2wac_A CG7008-PA; unknown func 88.7 0.63 2.2E-05 48.3 6.8 50 826-879 53-103 (218)
69 2e5p_A Protein PHF1, PHD finge 88.0 1.8 6E-05 38.0 7.8 48 823-871 8-55 (68)
70 3ltm_A Alpha-REP4; protein eng 87.4 3.9 0.00013 41.1 11.5 131 39-196 7-139 (211)
71 2e5q_A PHD finger protein 19; 86.8 1.1 3.9E-05 38.6 5.8 45 826-871 9-53 (63)
72 2qk1_A Protein STU2; STU2P, XM 86.7 6.7 0.00023 41.8 13.4 140 18-161 61-219 (249)
73 3tpo_A Importin subunit alpha- 86.4 2.6 9E-05 49.3 11.0 148 51-202 293-453 (529)
74 3ltj_A Alpharep-4; protein eng 85.6 17 0.00059 36.0 15.1 122 15-161 12-135 (201)
75 3ltm_A Alpha-REP4; protein eng 85.5 15 0.00051 36.8 14.7 146 19-196 21-170 (211)
76 3ntk_A Maternal protein tudor; 85.2 1 3.5E-05 45.7 5.8 49 825-878 48-97 (169)
77 3b2a_A TON_1937, putative unch 85.0 7.7 0.00026 42.1 12.5 118 32-153 131-252 (265)
78 1xqr_A HSPBP1 protein; armadil 85.0 7.8 0.00027 42.6 13.2 150 49-202 79-242 (296)
79 3u0r_A Apoptosis inhibitor 5; 83.8 78 0.0027 37.6 24.0 103 70-178 43-145 (507)
80 4b9x_A TDRD1, tudor domain-con 83.6 1.6 5.4E-05 46.3 6.6 50 826-878 67-117 (226)
81 3nmw_A APC variant protein; AR 82.8 8.3 0.00028 43.4 12.5 152 51-205 170-341 (354)
82 1oyz_A Hypothetical protein YI 81.8 18 0.00062 37.8 14.1 128 19-160 25-155 (280)
83 3b2a_A TON_1937, putative unch 81.0 20 0.00067 39.1 13.7 176 45-259 4-182 (265)
84 2iw3_A Elongation factor 3A; a 80.1 25 0.00085 45.1 16.6 177 73-271 33-219 (986)
85 2hqx_A P100 CO-activator tudor 79.7 2.3 7.7E-05 45.3 6.2 44 826-871 67-111 (246)
86 2x19_B Importin-13; nuclear tr 79.7 35 0.0012 42.5 17.7 147 70-219 464-621 (963)
87 1wgs_A MYST histone acetyltran 79.2 3.6 0.00012 40.6 6.9 38 824-862 12-53 (133)
88 3nmz_A APC variant protein; pr 79.1 6.8 0.00023 45.9 10.4 150 52-204 287-456 (458)
89 4b9w_A TDRD1, tudor domain-con 76.8 3.5 0.00012 42.8 6.4 51 826-879 67-118 (201)
90 3tjz_B Coatomer subunit gamma; 76.0 1.3 4.5E-05 50.4 3.1 103 15-120 102-204 (355)
91 3opb_A SWI5-dependent HO expre 74.9 79 0.0027 39.6 18.5 155 43-205 247-413 (778)
92 1wa5_C Importin alpha RE-expor 74.6 1.5E+02 0.005 37.3 21.4 194 70-278 420-650 (960)
93 3dlm_A Histone-lysine N-methyl 74.2 3.9 0.00013 43.4 5.9 49 824-872 68-120 (213)
94 3tjz_B Coatomer subunit gamma; 73.6 28 0.00095 39.5 13.2 177 13-199 23-206 (355)
95 3opb_A SWI5-dependent HO expre 72.2 41 0.0014 42.0 15.1 84 95-181 460-555 (778)
96 1xm9_A Plakophilin 1; armadill 71.3 21 0.00072 41.0 11.8 125 52-180 3-136 (457)
97 3h8z_A FragIle X mental retard 69.6 6.4 0.00022 38.7 5.9 54 823-880 59-119 (128)
98 3o2t_A Symplekin; heat repeat, 68.3 21 0.00072 41.1 10.7 168 32-205 45-263 (386)
99 2db0_A 253AA long hypothetical 64.9 52 0.0018 34.8 11.7 117 76-198 128-246 (253)
100 3bdl_A Staphylococcal nuclease 63.5 7.7 0.00026 46.6 6.2 50 826-879 413-463 (570)
101 3g2s_A C-terminal fragment of 63.3 31 0.0011 34.5 9.6 57 68-124 61-129 (149)
102 2db0_A 253AA long hypothetical 59.9 35 0.0012 36.1 9.3 137 47-198 28-170 (253)
103 3ldz_A STAM-1, signal transduc 59.3 28 0.00097 34.2 8.4 71 50-124 41-117 (140)
104 2eko_A Histone acetyltransfera 58.8 14 0.00046 34.1 5.5 42 823-864 8-54 (87)
105 2x1g_F Cadmus; transport prote 56.5 29 0.00099 43.4 9.9 144 71-218 480-636 (971)
106 3gs3_A Symplekin, LD45768P; he 56.4 1.1E+02 0.0038 33.1 13.2 136 69-204 67-249 (257)
107 2lcc_A AT-rich interactive dom 55.2 8.7 0.0003 34.4 3.5 39 824-862 5-47 (76)
108 1x5b_A Signal transducing adap 53.1 40 0.0014 34.0 8.5 71 50-124 51-128 (163)
109 1mhq_A ADP-ribosylation factor 50.8 32 0.0011 34.3 7.2 71 50-124 37-119 (148)
110 3grl_A General vesicular trans 50.5 91 0.0031 38.2 12.3 69 49-121 120-195 (651)
111 3zyq_A Hepatocyte growth facto 50.4 66 0.0022 34.0 10.0 67 50-120 44-117 (226)
112 2f5k_A MORF-related gene 15 is 48.5 25 0.00085 33.3 5.6 38 823-862 21-60 (102)
113 3u0r_A Apoptosis inhibitor 5; 48.3 63 0.0022 38.3 10.1 107 90-203 24-134 (507)
114 3nmw_A APC variant protein; AR 47.2 43 0.0015 37.6 8.5 117 49-165 212-337 (354)
115 1juq_A ADP-ribosylation factor 45.3 43 0.0015 34.1 7.3 71 50-124 49-131 (171)
116 2ro0_A Histone acetyltransfera 44.5 28 0.00097 32.3 5.3 37 826-864 25-63 (92)
117 2rnz_A Histone acetyltransfera 44.3 58 0.002 30.4 7.3 38 825-864 26-65 (94)
118 2of3_A ZYG-9; multifunctional 43.8 84 0.0029 34.3 9.8 48 70-117 182-232 (266)
119 2eqm_A PHD finger protein 20-l 43.5 1.7E+02 0.0058 26.7 10.3 49 826-875 21-72 (88)
120 3o2t_A Symplekin; heat repeat, 43.3 85 0.0029 36.1 10.1 73 83-159 54-126 (386)
121 2x19_B Importin-13; nuclear tr 42.4 88 0.003 38.9 11.0 145 72-217 424-575 (963)
122 1te4_A Conserved protein MTH18 42.3 34 0.0012 32.0 5.7 72 94-182 44-115 (131)
123 3nmz_A APC variant protein; pr 41.5 46 0.0016 38.8 7.8 116 49-164 328-452 (458)
124 1wa5_C Importin alpha RE-expor 40.8 4.6E+02 0.016 32.7 17.2 161 39-200 481-672 (960)
125 1te4_A Conserved protein MTH18 40.4 74 0.0025 29.6 7.7 87 52-158 43-129 (131)
126 2qqr_A JMJC domain-containing 39.0 58 0.002 31.6 6.6 53 823-879 62-114 (118)
127 2of3_A ZYG-9; multifunctional 38.7 3.5E+02 0.012 29.4 13.6 147 32-199 35-194 (266)
128 2iw3_A Elongation factor 3A; a 38.7 1.1E+02 0.0039 39.2 11.1 93 70-162 110-204 (986)
129 3l6x_A Catenin delta-1; cateni 38.4 71 0.0024 38.6 8.9 117 45-165 42-166 (584)
130 4ffb_C Protein STU2; tubulin f 38.0 1.8E+02 0.0062 30.6 11.2 108 90-199 53-169 (278)
131 1dvp_A HRS, hepatocyte growth 38.0 68 0.0023 33.6 7.7 69 49-121 40-115 (220)
132 2qqr_A JMJC domain-containing 37.5 41 0.0014 32.6 5.3 43 823-867 4-46 (118)
133 2x1g_F Cadmus; transport prote 36.2 3.8E+02 0.013 33.3 15.4 144 72-216 438-590 (971)
134 1xm9_A Plakophilin 1; armadill 36.1 2.1E+02 0.0072 32.6 12.1 107 93-199 3-117 (457)
135 2xdp_A Lysine-specific demethy 35.7 47 0.0016 32.5 5.5 52 823-878 63-114 (123)
136 1xqr_A HSPBP1 protein; armadil 35.3 78 0.0027 34.6 7.9 114 47-163 120-239 (296)
137 1elk_A Target of MYB1; superhe 35.1 92 0.0031 31.1 7.8 73 49-124 51-133 (157)
138 4h75_A Spindlin-1; tudor domai 34.7 57 0.0019 34.4 6.1 45 820-864 23-71 (238)
139 3tt9_A Plakophilin-2; cell adh 32.1 2.5E+02 0.0085 29.7 11.0 91 73-163 28-125 (233)
140 2bud_A Males-absent on the fir 31.8 93 0.0032 29.0 6.5 36 828-864 18-58 (92)
141 2lcd_A AT-rich interactive dom 35.8 11 0.00038 36.3 0.0 49 821-871 53-101 (118)
142 3rru_A TOM1L1 protein; structu 29.3 71 0.0024 32.0 5.8 72 50-124 52-133 (152)
143 3ask_A E3 ubiquitin-protein li 28.8 79 0.0027 33.8 6.3 49 827-875 5-63 (226)
144 3grl_A General vesicular trans 28.2 2.6E+02 0.0088 34.4 11.3 130 73-202 40-199 (651)
145 3gs3_A Symplekin, LD45768P; he 26.8 1.9E+02 0.0065 31.3 9.0 74 82-159 43-116 (257)
146 3m1i_C Exportin-1; heat repeat 25.8 2.2E+02 0.0075 36.1 10.8 73 144-216 551-638 (1049)
147 4ffb_C Protein STU2; tubulin f 25.5 4.1E+02 0.014 27.8 11.4 97 22-119 60-166 (278)
148 1vsy_5 Proteasome activator BL 25.1 1.1E+03 0.037 30.3 16.8 81 36-117 115-199 (997)
149 2xdp_A Lysine-specific demethy 24.6 25 0.00087 34.3 1.5 43 823-867 5-47 (123)
150 1y96_A Gemin6, SIP2, GEM-assoc 24.3 63 0.0021 29.7 3.9 32 824-856 13-44 (86)
151 1h2v_C 80 kDa nuclear CAP bind 24.2 4.5E+02 0.015 32.8 12.8 127 32-181 8-138 (771)
152 3dlm_A Histone-lysine N-methyl 24.1 76 0.0026 33.7 5.0 45 823-868 7-53 (213)
153 3a6p_A Exportin-5; exportin-5, 23.3 1.3E+03 0.045 29.8 26.5 58 241-312 221-278 (1204)
154 3l6x_A Catenin delta-1; cateni 23.2 4.5E+02 0.016 31.6 12.3 95 88-182 44-144 (584)
155 2fhd_A RAD9 homolog, DNA repai 22.3 1.7E+02 0.0057 29.5 6.8 44 826-869 7-55 (153)
156 1vsy_4 Proteasome activator BL 22.0 2.5E+02 0.0087 35.1 10.0 40 50-89 421-460 (799)
157 2rg8_A Programmed cell death p 21.9 5.8E+02 0.02 25.5 11.0 79 130-220 41-119 (165)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.81 E-value=0.017 Score=74.41 Aligned_cols=235 Identities=15% Similarity=0.117 Sum_probs=133.5
Q ss_pred HHHHHHhccCCc-----HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcC-----
Q 001196 20 DDLLKILGAKHR-----LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL----- 89 (1125)
Q Consensus 20 ~ELLKRLg~k~~-----l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L----- 89 (1125)
..|++-|.+.++ ....+..|..++ ...+++.|+..+.....+.+......|...|..|+...+.-
T Consensus 51 ~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~-----~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~ 125 (1230)
T 1u6g_C 51 KMILKLLEDKNGEVQNLAVKCLGPLVSKV-----KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 445555655443 223333333333 33667777765554322333334566778888888877654
Q ss_pred -----ccccHHHHHHHHhh-ccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCC
Q 001196 90 -----LGGTEEELVNLLKE-ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKD 163 (1125)
Q Consensus 90 -----Fk~~v~~L~~lL~d-~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d 163 (1125)
...-+..|...|.+ .+..+...+|.+|..+...+...+.+....+.+.|...-....+..-+.|+.+|..++..
T Consensus 126 ~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~ 205 (1230)
T 1u6g_C 126 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 205 (1230)
T ss_dssp THHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh
Confidence 22223556666663 556678889999987653333233333344555555544455666667889999877765
Q ss_pred CccchHHHHHHHHHHhhhcC---CCCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHH
Q 001196 164 DGLKSLSVLYKRLVDMLEEK---THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSEL 240 (1125)
Q Consensus 164 ~~~~~ls~L~e~Lv~~Le~~---s~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~ 240 (1125)
.+...+..++..++..|... ..-.+.+.+|+.|+...|..|..+-..|+.++++-+ . +. ++.
T Consensus 206 ~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l-~-d~-------------~~~ 270 (1230)
T 1u6g_C 206 CGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFC-N-VD-------------DDE 270 (1230)
T ss_dssp C----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHH-S-SC-------------CTT
T ss_pred cCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-c-CC-------------CHH
Confidence 44323344556666655433 244567999999999999999888888998887633 2 10 011
Q ss_pred HHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHh
Q 001196 241 CLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSM 277 (1125)
Q Consensus 241 ~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~l 277 (1125)
.+..++.+|..++..+.. ...+.+..++..|...
T Consensus 271 --vR~~a~~~l~~l~~~~~~-~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 271 --LREYCIQAFESFVRRCPK-EVYPHVSTIINICLKY 304 (1230)
T ss_dssp --THHHHHHHHHHHHHCTTC-CCHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHHHHChH-HHHHhHHHHHHHHHHH
Confidence 234566666666654443 2334444455554443
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.75 E-value=0.016 Score=71.71 Aligned_cols=262 Identities=13% Similarity=0.068 Sum_probs=162.7
Q ss_pred hhhhHHHHHHHHHHHHhh-CCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcc-----cChhHHHHHHHH
Q 001196 68 NAQFMQSCMDILGILARF-SPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA-----TSSSVDLLLERL 141 (1125)
Q Consensus 68 ~~~~~~~AleLL~~IS~~-~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~-----~~s~l~~~L~~l 141 (1125)
+......+..++..|+.. +|.....-+..|+..+...+..+.+.+|.+|..+...++..+.. ....+.+.|.++
T Consensus 103 ~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~ 182 (852)
T 4fdd_A 103 SPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF 182 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHH
Confidence 334556677788887776 46555566788999988888888889999998876555433211 123455555555
Q ss_pred hhcCChHHHHHHHHHHHhhcCCCcc---chHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccchhHHHHHHHH
Q 001196 142 CLEGSRRQAKYAVHALAAITKDDGL---KSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIK 216 (1125)
Q Consensus 142 AleGTPrqAKyAVr~LaAls~d~~~---~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIi 216 (1125)
....++..-..|+.+|..+...... ..+..++..|+..+...+ --...+.+|+.|+...|..+..+-..|..+++
T Consensus 183 l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~ 262 (852)
T 4fdd_A 183 FKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYML 262 (852)
T ss_dssp TTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 4455666667889999866644321 234466777776665544 33567889999999999999888778888877
Q ss_pred HhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCc-ccccccchHHHHHHHHHhhhc---------CCCcCC
Q 001196 217 SKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVK-DAHIRPGIDDLLGILKSMLSY---------GEMSED 286 (1125)
Q Consensus 217 K~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~-~~~~~~~~~~llkLL~~ll~~---------GEL~~~ 286 (1125)
+- +.. .++ ..+..|+.++...+.... .....+.+..++.+|...+.+ +|...+
T Consensus 263 ~~-~~~--------------~~~--~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed 325 (852)
T 4fdd_A 263 QR-TQD--------------QDE--NVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG 325 (852)
T ss_dssp HH-HTC--------------SSH--HHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred HH-ccC--------------CcH--HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence 52 211 111 234567777666443211 012345555666666555421 222111
Q ss_pred cCCCh-hhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHh
Q 001196 287 IESSS-VDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQY 346 (1125)
Q Consensus 287 ~~tp~-~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~ 346 (1125)
..... ...-.+|-+|+.+|-.||......+-+..+..+..+++|+.+.||..-+.-|...
T Consensus 326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i 386 (852)
T 4fdd_A 326 SGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAI 386 (852)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT
T ss_pred cccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 00000 0234689999999999998755555555666666677899999999876666543
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.67 E-value=0.0069 Score=74.97 Aligned_cols=312 Identities=9% Similarity=0.055 Sum_probs=172.7
Q ss_pred eehhcccchhhHHHHHHHHHhccCCc-----HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHH
Q 001196 6 LWIDFVSIYFPVLQDDLLKILGAKHR-----LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILG 80 (1125)
Q Consensus 6 ~~~~~~s~~~~~ar~ELLKRLg~k~~-----l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~ 80 (1125)
.|..+.......+|..+++-|++..+ +...+..+..+. +.-.=.+-++.|+..+. +.+......++..|.
T Consensus 79 ~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~~~wp~ll~~L~~~l~----~~~~~~r~~al~~L~ 153 (852)
T 4fdd_A 79 HFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG-ELQNWPDLLPKLCSLLD----SEDYNTCEGAFGALQ 153 (852)
T ss_dssp SGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT-TTTTCTTHHHHHHHHHS----CSSHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHc----CCCHHHHHHHHHHHH
Confidence 47776666777888999998887654 334444443333 21122345556655332 223456678999999
Q ss_pred HHHhhCCcCccc---------cHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHH
Q 001196 81 ILARFSPLLLGG---------TEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAK 151 (1125)
Q Consensus 81 ~IS~~~P~LFk~---------~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAK 151 (1125)
.|...+|..|.. .+..|+.+|.+.+..+...++++|+.+....+..+......+++.|..++..+++...+
T Consensus 154 ~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~ 233 (852)
T 4fdd_A 154 KICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRK 233 (852)
T ss_dssp HHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 999999987643 23444555556666778888999987754333223233345777788888888888889
Q ss_pred HHHHHHHhhcCCCcc---chHHHHHHHHHHhhhcCC-CC-chHHHHHHHHHhhc--cccccchhHHHHHHHHHhhhccc-
Q 001196 152 YAVHALAAITKDDGL---KSLSVLYKRLVDMLEEKT-HL-PAVLQSLGCIAQTA--MPVFETRESEIEEFIKSKILRCS- 223 (1125)
Q Consensus 152 yAVr~LaAls~d~~~---~~ls~L~e~Lv~~Le~~s-~l-~T~L~aLgqIA~~a--P~vfe~~~~eI~~fIiK~LLl~~- 223 (1125)
.|+.+|..++..... .++..++.-+...+.... .. ...+..|..++... ...+......|+..++..+...+
T Consensus 234 ~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~ 313 (852)
T 4fdd_A 234 NVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDI 313 (852)
T ss_dssp HHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHh
Confidence 999999876654221 235556666665554333 11 12234444444321 12223334444444443331110
Q ss_pred ------CCC-CCCCC----CCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChh
Q 001196 224 ------NKI-RNDTK----ACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSV 292 (1125)
Q Consensus 224 ------~~~-~~~~~----~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~ 292 (1125)
... ++.++ ..|. .+..|..+|........+ ..+..++.+|..++..
T Consensus 314 d~~~~~~d~~ed~~~dd~~~~~~-------vr~~a~~~L~~la~~~~~----~~~~~l~~~l~~~l~~------------ 370 (852)
T 4fdd_A 314 DIILLKGDVEGGSGGDDTISDWN-------LRKCSAAALDVLANVYRD----ELLPHILPLLKELLFH------------ 370 (852)
T ss_dssp HHHHHHC------------CCCC-------HHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHTC------------
T ss_pred HHHHhcCCcccccccccccccch-------HHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcC------------
Confidence 110 00000 1221 122333333332221121 2344566666655411
Q ss_pred hHhhHHHHHHHHHHhhhcccCCC---CCHHHHHHHhhcccCCchhHHHHHHHHHHH
Q 001196 293 DKAHLRLASAKAVLRLSRQWDHK---IPVDVFHLTLRTPEISFPQAKKLFLSKVHQ 345 (1125)
Q Consensus 293 ~kArLRLaAa~sLLKLAr~~d~~---Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k 345 (1125)
...+.|.+|..+|=.|+...... +-+..+..+..+++|+.+.||..-+.-|-.
T Consensus 371 ~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~ 426 (852)
T 4fdd_A 371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSR 426 (852)
T ss_dssp SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 13678999999999998753222 223455556678899999999976665543
No 4
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.53 E-value=0.038 Score=61.87 Aligned_cols=253 Identities=15% Similarity=0.049 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHhh-CCc-CccccHHHHHHHHhhc--cchhHHHHHHHHHHhccch-hhhhcccChhHHHHHHHHhhcC--
Q 001196 73 QSCMDILGILARF-SPL-LLGGTEEELVNLLKEE--NEIIKEGILHVLAKAGGTI-REQLAATSSSVDLLLERLCLEG-- 145 (1125)
Q Consensus 73 ~~AleLL~~IS~~-~P~-LFk~~v~~L~~lL~d~--n~~vve~aLkaLAk~gk~i-~e~~~~~~s~l~~~L~~lAleG-- 145 (1125)
..+..+|..|+.. +|. .+..-+..|+..+.+. ++.+.+.+|.+|..+...+ ++.+.+....+.+.|..+....
T Consensus 107 ~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCC
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCC
Confidence 4566777777766 574 5666678888888887 7778889999999776543 2223333345667777666555
Q ss_pred ChHHHHHHHHHHHhhcCCCc----cchH-HHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccchhH-HHHHHHHH
Q 001196 146 SRRQAKYAVHALAAITKDDG----LKSL-SVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRES-EIEEFIKS 217 (1125)
Q Consensus 146 TPrqAKyAVr~LaAls~d~~----~~~l-s~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~-eI~~fIiK 217 (1125)
++..-+.|+++|..+..--. ...+ ..++..|...+.... --.+.+.+|+.|+...|..|..+.. .|..+++.
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46556778898876443111 0001 113444433333222 2346788999999999998888766 78777664
Q ss_pred hhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCc------c--------------cccccchHHHHHHHHHh
Q 001196 218 KILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVK------D--------------AHIRPGIDDLLGILKSM 277 (1125)
Q Consensus 218 ~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~------~--------------~~~~~~~~~llkLL~~l 277 (1125)
-+ . +.++. .+..|+.++...+.... + ...++.+..++..|...
T Consensus 267 ~~--~-------------~~~~~--v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 267 AM--K-------------SDIDE--VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp HH--H-------------CSSHH--HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HH--c-------------CCchH--HHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 32 1 11122 23456665544432210 0 00011123344444433
Q ss_pred hhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhH
Q 001196 278 LSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYV 347 (1125)
Q Consensus 278 l~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L 347 (1125)
+...+ .+. ..+....|-+|+.+|-.|+......+.+..+..+...++|+.+.||..-+.-|-...
T Consensus 330 l~~~d--~d~---~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~ 394 (462)
T 1ibr_B 330 LTKQD--END---DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (462)
T ss_dssp TTCCC--SSC---CTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHhcc--ccc---ccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 32111 110 012236788999999999987655555555555556778999999998877776544
No 5
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.47 E-value=0.011 Score=66.18 Aligned_cols=312 Identities=10% Similarity=0.080 Sum_probs=165.6
Q ss_pred ehhcccchhhHHHHHHHHHhccCCc----HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcc-hhhhHHHHHHHHHH
Q 001196 7 WIDFVSIYFPVLQDDLLKILGAKHR----LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSA-NAQFMQSCMDILGI 81 (1125)
Q Consensus 7 ~~~~~s~~~~~ar~ELLKRLg~k~~----l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~-~~~~~~~AleLL~~ 81 (1125)
|..+.......+|..|+..|.+..+ +...+..+.....+.-.=.+-++.|+..+.. +. +......|+.+|..
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~---~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTN---PNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHC---TTCCHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHhccccccHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHH
Confidence 5565566667788888888877543 3333444433332321224567777764432 11 33456789999999
Q ss_pred HHhhC-CcCccccHHHHHH----HHhhc--cchhHHHHHHHHHHhccchhhhhcc--cChhHHHHHHHHhhcCChHHHHH
Q 001196 82 LARFS-PLLLGGTEEELVN----LLKEE--NEIIKEGILHVLAKAGGTIREQLAA--TSSSVDLLLERLCLEGSRRQAKY 152 (1125)
Q Consensus 82 IS~~~-P~LFk~~v~~L~~----lL~d~--n~~vve~aLkaLAk~gk~i~e~~~~--~~s~l~~~L~~lAleGTPrqAKy 152 (1125)
|...+ |.+|..+...|+. +|.+. +..+...++++|..+...+...... ....+.+.|..+.....+...+.
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99876 8888888766554 44444 4566778889888764433322211 11234667777666667777788
Q ss_pred HHHHHHhhcCCCcc---chHH-HHHHHHHHhhhcCC--CCchHHHHHHHHHhhcc------------------c---ccc
Q 001196 153 AVHALAAITKDDGL---KSLS-VLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAM------------------P---VFE 205 (1125)
Q Consensus 153 AVr~LaAls~d~~~---~~ls-~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP------------------~---vfe 205 (1125)
|+++|..+...... .++. .++..++..+.... -....+..|+.++.... . .+.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316 (462)
T ss_dssp HHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHH
Confidence 88998766643221 1233 45555555454332 12234444555554321 0 111
Q ss_pred chhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcC
Q 001196 206 TRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSE 285 (1125)
Q Consensus 206 ~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~ 285 (1125)
.+...|+..+++. | .... ++..+..|. .+..|..+|..-+....+ ..+..++.+|...++.
T Consensus 317 ~~~~~l~p~l~~~-l-~~~d-~d~~~~~~~-------~r~~a~~~L~~l~~~~~~----~~~~~~~~~l~~~l~~----- 377 (462)
T 1ibr_B 317 GALQYLVPILTQT-L-TKQD-ENDDDDDWN-------PCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKN----- 377 (462)
T ss_dssp HHHHHHHHHHHHH-T-TCCC-SSCCTTCCS-------HHHHHHHHHHHHHHHTTT----THHHHHHHHHHHHTTC-----
T ss_pred HHhhhccHHHHHH-H-Hhcc-cccccccch-------HHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcC-----
Confidence 1112333333321 1 1111 111223442 123344443332222221 2334455555554421
Q ss_pred CcCCChhhHhhHHHHHHHHHHhhhcccC-CCC---CHHHHHHHhhcccCCchhHHHHHHHHHHHhH
Q 001196 286 DIESSSVDKAHLRLASAKAVLRLSRQWD-HKI---PVDVFHLTLRTPEISFPQAKKLFLSKVHQYV 347 (1125)
Q Consensus 286 ~~~tp~~~kArLRLaAa~sLLKLAr~~d-~~I---tp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L 347 (1125)
..-+.|.+|..+|=.|+...+ ..+ -+..+..+...++|+.+.||..-+.-|.++.
T Consensus 378 -------~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 378 -------PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp -------SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -------CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 125788999999888887432 222 1455666667888999999877655554443
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.35 E-value=0.37 Score=58.61 Aligned_cols=312 Identities=10% Similarity=0.034 Sum_probs=163.5
Q ss_pred ehh-cccchhhHHHHHHHHHhccCCc-----HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcc-hhhhHHHHHHHH
Q 001196 7 WID-FVSIYFPVLQDDLLKILGAKHR-----LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSA-NAQFMQSCMDIL 79 (1125)
Q Consensus 7 ~~~-~~s~~~~~ar~ELLKRLg~k~~-----l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~-~~~~~~~AleLL 79 (1125)
|.. +.......+|..++..|.+..+ +...+..+....-+.--=.+-++.|+..+ .+. +......++.+|
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l----~~~~~~~~r~~al~~l 159 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNT----GAEQPENVKRASLLAL 159 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHT----STTSCHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHH----hcCCCHHHHHHHHHHH
Confidence 554 6666777888999999988654 33333333333222101134455555532 222 345667788999
Q ss_pred HHHHhhCCcC---ccccHHHHHHHH----hhc--cchhHHHHHHHHHHhccchhhhhcc--cChhHHHHHHHHhhcCChH
Q 001196 80 GILARFSPLL---LGGTEEELVNLL----KEE--NEIIKEGILHVLAKAGGTIREQLAA--TSSSVDLLLERLCLEGSRR 148 (1125)
Q Consensus 80 ~~IS~~~P~L---Fk~~v~~L~~lL----~d~--n~~vve~aLkaLAk~gk~i~e~~~~--~~s~l~~~L~~lAleGTPr 148 (1125)
..|...++.- |..+...|+..| .+. +..+...++++|..+...+...+.. ....+.+.|..++..+.+.
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 239 (861)
T 2bpt_A 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239 (861)
T ss_dssp HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHH
Confidence 9998866543 667777775544 344 4567778889888764333322210 0134677777777777888
Q ss_pred HHHHHHHHHHhhcCCCcc---chHH-HHHHHHHHhhhcCC--CCchHHHHHHHHHhhccc-------------cccchhH
Q 001196 149 QAKYAVHALAAITKDDGL---KSLS-VLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMP-------------VFETRES 209 (1125)
Q Consensus 149 qAKyAVr~LaAls~d~~~---~~ls-~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~-------------vfe~~~~ 209 (1125)
.-+.|+.+|..+...... .++. .|+.-+...+.... -....+..|+.++...+. .......
T Consensus 240 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (861)
T 2bpt_A 240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH
Confidence 788899998766643221 1233 45554544454333 223345556666554321 0001112
Q ss_pred HHHHHHHHhhhcccCCCC-CCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcC
Q 001196 210 EIEEFIKSKILRCSNKIR-NDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIE 288 (1125)
Q Consensus 210 eI~~fIiK~LLl~~~~~~-~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~ 288 (1125)
.+...|+..++..-...+ +.++.+| ..+..|..+|........+ ..+..++.+|..++..
T Consensus 320 ~~~~~il~~ll~~l~~~~~d~~d~~~-------~~r~~a~~~L~~l~~~~~~----~~~~~l~~~l~~~l~~-------- 380 (861)
T 2bpt_A 320 SSIKDVVPNLLNLLTRQNEDPEDDDW-------NVSMSAGACLQLFAQNCGN----HILEPVLEFVEQNITA-------- 380 (861)
T ss_dssp HHHHHHHHHHHHHTTCCCCC-CCCCC-------HHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHHhcccccccccC-------cHHHHHHHHHHHHHHHccH----hHHHHHHHHHHHHcCC--------
Confidence 233444444432211111 1112223 1223344444443322221 2344566666655421
Q ss_pred CChhhHhhHHHHHHHHHHhhhcccC-CCCC---HHHHHHHhhcccCCchhHHHHHHHHHHH
Q 001196 289 SSSVDKAHLRLASAKAVLRLSRQWD-HKIP---VDVFHLTLRTPEISFPQAKKLFLSKVHQ 345 (1125)
Q Consensus 289 tp~~~kArLRLaAa~sLLKLAr~~d-~~It---p~~F~~La~lvQD~~~eVR~~Fl~KL~k 345 (1125)
...+.|-+|..+|=.|+.... ..+. +..+..+...+.|+.+.||...+.-|-.
T Consensus 381 ----~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~ 437 (861)
T 2bpt_A 381 ----DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGR 437 (861)
T ss_dssp ----SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred ----CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 114578888888888885432 2221 1223334467789999999876554443
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.15 E-value=0.28 Score=59.66 Aligned_cols=257 Identities=12% Similarity=0.076 Sum_probs=145.2
Q ss_pred hhhHHHHHHHHHHHHhh-CCc-CccccHHHHHHHHhhc-cchhHHHHHHHHHHhccchhhh---hcccChhHHHHHHHHh
Q 001196 69 AQFMQSCMDILGILARF-SPL-LLGGTEEELVNLLKEE-NEIIKEGILHVLAKAGGTIREQ---LAATSSSVDLLLERLC 142 (1125)
Q Consensus 69 ~~~~~~AleLL~~IS~~-~P~-LFk~~v~~L~~lL~d~-n~~vve~aLkaLAk~gk~i~e~---~~~~~s~l~~~L~~lA 142 (1125)
......+..+|..|+.. +|. .+..-+..|+..+... ++.+.+.+|.+|..+...+... +.+....+.+.|....
T Consensus 109 ~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l 188 (861)
T 2bpt_A 109 PRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGA 188 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhh
Confidence 34455666777777766 574 5555567788888776 7778888888888775443322 1223334555555554
Q ss_pred hcC--ChHHHHHHHHHHHhhcCCCc-----cchHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccchhH-HHH
Q 001196 143 LEG--SRRQAKYAVHALAAITKDDG-----LKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRES-EIE 212 (1125)
Q Consensus 143 leG--TPrqAKyAVr~LaAls~d~~-----~~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~-eI~ 212 (1125)
... ++..-..|++||..+..--. ......++..|...+.... .-...+.+|+.|+...|..|..+.. .|.
T Consensus 189 ~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~ 268 (861)
T 2bpt_A 189 QSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALY 268 (861)
T ss_dssp STTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 56666788999876532110 0011234555554443333 2345788899999999988877655 666
Q ss_pred HHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcc----------------cccccchHHHHHHHHH
Q 001196 213 EFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKD----------------AHIRPGIDDLLGILKS 276 (1125)
Q Consensus 213 ~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~----------------~~~~~~~~~llkLL~~ 276 (1125)
.+++..+ . +.++ ..+..|+.++...+..... ......+..++..|..
T Consensus 269 ~~~~~~~--~-------------~~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~ 331 (861)
T 2bpt_A 269 ALTIATM--K-------------SPND--KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLN 331 (861)
T ss_dssp HHHHHHT--T-------------CSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--c-------------CCcH--HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHH
Confidence 6655422 1 1111 2345566655443322100 0111222334444444
Q ss_pred hhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhH
Q 001196 277 MLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYV 347 (1125)
Q Consensus 277 ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L 347 (1125)
.+...+ .+. ..+...+|-+|+.+|-.||......+-+..+..+..+++++.+.+|..-+.-|....
T Consensus 332 ~l~~~~--~d~---~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~ 397 (861)
T 2bpt_A 332 LLTRQN--EDP---EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM 397 (861)
T ss_dssp HTTCCC--CC----CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHhcc--ccc---ccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence 332211 110 012236788999999999987654444555555556778889999988766665444
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.01 E-value=0.057 Score=69.53 Aligned_cols=268 Identities=14% Similarity=0.124 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHH----HHhhccc--hhHHHHHHHHHHhccchh
Q 001196 51 EHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVN----LLKEENE--IIKEGILHVLAKAGGTIR 124 (1125)
Q Consensus 51 ShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~----lL~d~n~--~vve~aLkaLAk~gk~i~ 124 (1125)
..++.|+..+.....+.+......+..+|..+...+|..+..|.+.|+. +|.+.+. .+...++..+..+...+.
T Consensus 430 ~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~ 509 (1230)
T 1u6g_C 430 SQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS 509 (1230)
T ss_dssp HHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC
T ss_pred HHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCC
Confidence 3455555543332223333445678999999999999988888766654 4444443 567777888776643221
Q ss_pred -hhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhc---CC-------CccchHHHHHHHHHHhhhcC--C--CCchH
Q 001196 125 -EQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT---KD-------DGLKSLSVLYKRLVDMLEEK--T--HLPAV 189 (1125)
Q Consensus 125 -e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls---~d-------~~~~~ls~L~e~Lv~~Le~~--s--~l~T~ 189 (1125)
+.+.+....+.+.|.......+++.+-.|+.+|..++ +. .-..++..|+..|+..|... . .-.+.
T Consensus 510 ~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a 589 (1230)
T 1u6g_C 510 PQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERA 589 (1230)
T ss_dssp GGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 2233334456667766666666666556666666554 22 11135667777777777432 2 22456
Q ss_pred HHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHH
Q 001196 190 LQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDD 269 (1125)
Q Consensus 190 L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~ 269 (1125)
+.+||.|+......+..+...|+..+... |... + .+..+++++..-..+.......+.+..
T Consensus 590 ~~~lg~L~~~~g~~~~~~~~~~l~~L~~~-l~~e----------~--------~r~~~~~al~~i~~~~~~~~~~~~~~~ 650 (1230)
T 1u6g_C 590 ISCMGQIICNLGDNLGSDLPNTLQIFLER-LKNE----------I--------TRLTTVKALTLIAGSPLKIDLRPVLGE 650 (1230)
T ss_dssp HHHHHHHHHHTGGGCCTHHHHHHHHHHHH-TTSS----------S--------HHHHHHHHHHHHTTCSSCCCCHHHHHH
T ss_pred HHHHHHHHHHhCchhhhhHHHHHHHHHHH-hccc----------h--------hHHHHHHHHHHHHhCccccchHHHHHH
Confidence 78999999999888876666666665432 2211 0 133455555443322211122344555
Q ss_pred HHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHh----hcccCCchhHHHHHHHHHHH
Q 001196 270 LLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTL----RTPEISFPQAKKLFLSKVHQ 345 (1125)
Q Consensus 270 llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La----~lvQD~~~eVR~~Fl~KL~k 345 (1125)
++..|...+.. .-..+|..|+.+|-+|+......+..+.+..+. -++.|+..+++...+.-|..
T Consensus 651 i~~~L~~~l~~------------~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~ 718 (1230)
T 1u6g_C 651 GVPILASFLRK------------NQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTT 718 (1230)
T ss_dssp HHHHHHHHTTS------------CCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh------------CCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Confidence 56666554411 113589999999999999876666666555443 23567888888877777776
Q ss_pred hHhc
Q 001196 346 YVKD 349 (1125)
Q Consensus 346 ~L~~ 349 (1125)
.+..
T Consensus 719 l~~~ 722 (1230)
T 1u6g_C 719 LAKV 722 (1230)
T ss_dssp HTTS
T ss_pred HHHh
Confidence 6643
No 9
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.97 E-value=0.039 Score=64.34 Aligned_cols=297 Identities=10% Similarity=0.067 Sum_probs=170.0
Q ss_pred HHHHHHhccCCc--HHHHHHHHHHHhcc-------cccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCc
Q 001196 20 DDLLKILGAKHR--LYDFLSTLSMKCSY-------LLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLL 90 (1125)
Q Consensus 20 ~ELLKRLg~k~~--l~etlk~LL~RsS~-------lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LF 90 (1125)
..|+..|.+.++ ....+..|-.-++. .++....|+.|+..+.. ..+......|...|..|+...|..-
T Consensus 90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~---~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE---NQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST---TSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCC---CCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 567777776654 22333333222221 12333457777763322 1133455678888888887655322
Q ss_pred -----cccHHHHHHHHhhccchhHHHHHHHHHHhccchhhh-hcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCC
Q 001196 91 -----GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 164 (1125)
Q Consensus 91 -----k~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~-~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~ 164 (1125)
.+.+..|+.+|...++.+.+.++.+|.+++..-++. ........++.|..+...+++.....|+.+|..++...
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 355789999999888888999999999876431111 01123356777888877778888889999998888553
Q ss_pred ----ccchHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccch-hHHHHHHHHHhhhcccCCCCCCCCCCCCCC
Q 001196 165 ----GLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACWDDR 237 (1125)
Q Consensus 165 ----~~~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~-~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~ 237 (1125)
.......++..|+..|...+ -....+.+|+.|+...+..+... ...++..++. +|.. .
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~-lL~~-~------------- 311 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE-LLSH-E------------- 311 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH-GGGC-S-------------
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHH-HHCC-C-------------
Confidence 11223345666666665544 33456777777776554433221 1123344433 2221 0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCcccccccch-HHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCC--
Q 001196 238 SELCLLKIYGIKTLVKSYLPVKDAHIRPGI-DDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDH-- 314 (1125)
Q Consensus 238 Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~-~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~-- 314 (1125)
+ ...+..|+.+|.|.+.+... .....+ ..++..|..++..+ ...+|..|+.+|-.||.....
T Consensus 312 ~--~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~------------~~~vr~~A~~aL~~l~~~~~~~~ 376 (530)
T 1wa5_B 312 S--TLVQTPALRAVGNIVTGNDL-QTQVVINAGVLPALRLLLSSP------------KENIKKEACWTISNITAGNTEQI 376 (530)
T ss_dssp C--HHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCS------------CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred C--hhhHHHHHHHHHHHHcCCHH-HHHHHHHcchHHHHHHHHcCC------------CHHHHHHHHHHHHHHHcCCHHHH
Confidence 1 23456788998887755432 111111 12455555554221 257899999999999863211
Q ss_pred --CCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhc
Q 001196 315 --KIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKD 349 (1125)
Q Consensus 315 --~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L~~ 349 (1125)
.+....+-.|..+++++.+.||..-+.-|......
T Consensus 377 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 377 QAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 11111223344455778889998877777666554
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.91 E-value=0.07 Score=61.77 Aligned_cols=258 Identities=11% Similarity=0.088 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcC-ccccHHHHH-HHHhhccchhHHHHHHHHHHhccchhhhhcc
Q 001196 52 HVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL-LGGTEEELV-NLLKEENEIIKEGILHVLAKAGGTIREQLAA 129 (1125)
Q Consensus 52 hV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L-Fk~~v~~L~-~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~ 129 (1125)
++..|+..+.....+.+......|.+.|..|+...|.- +..++-.++ .+..+++..+...++.+|..+...+...
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--- 160 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--- 160 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence 44444443322212233445677888888888877742 223333333 3333344444555666666554433221
Q ss_pred cChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc-chHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccc
Q 001196 130 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL-KSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFET 206 (1125)
Q Consensus 130 ~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~-~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~ 206 (1125)
....+.+.|..++...++..-..|+.+|..+...-+. .....++..+...+.... --...+.+|+.|+...+.. .
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~ 238 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D 238 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence 2346788888888888888888899998877654332 223445555555554443 1234578888888776542 1
Q ss_pred hhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCC
Q 001196 207 RESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSED 286 (1125)
Q Consensus 207 ~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~ 286 (1125)
....|..++.. ++. +..| ..+..|+.+|...+.....+. ....++..|..+++..
T Consensus 239 ~~~~~~~~l~~-~~~---------d~~~-------~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~----- 293 (588)
T 1b3u_A 239 LEALVMPTLRQ-AAE---------DKSW-------RVRYMVADKFTELQKAVGPEI---TKTDLVPAFQNLMKDC----- 293 (588)
T ss_dssp HHHHTHHHHHH-HHT---------CSSH-------HHHHHHHHTHHHHHHHHCHHH---HHHTHHHHHHHHHTCS-----
T ss_pred HHHHHHHHHHH-Hcc---------CCCH-------HHHHHHHHHHHHHHHHhCccc---chhHHHHHHHHHhCCC-----
Confidence 12334444332 221 1223 234556666665543322111 1223555555554221
Q ss_pred cCCChhhHhhHHHHHHHHHHhhhcccCCC-----CCHHHHHHHhhcccCCchhHHHHHHHHHHHh
Q 001196 287 IESSSVDKAHLRLASAKAVLRLSRQWDHK-----IPVDVFHLTLRTPEISFPQAKKLFLSKVHQY 346 (1125)
Q Consensus 287 ~~tp~~~kArLRLaAa~sLLKLAr~~d~~-----Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~ 346 (1125)
-..+|.+|+.+|-.++...... +.+..+-.+..+++|+.+.||...+.-|...
T Consensus 294 -------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 294 -------EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351 (588)
T ss_dssp -------SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred -------cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2367999999999998764332 1222333444677999999999877665543
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.86 E-value=0.19 Score=61.40 Aligned_cols=253 Identities=15% Similarity=0.043 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHhh-CC-cCccccHHHHHHHHhhc--cchhHHHHHHHHHHhccch-hhhhcccChhHHHHHHHHhhcC--
Q 001196 73 QSCMDILGILARF-SP-LLLGGTEEELVNLLKEE--NEIIKEGILHVLAKAGGTI-REQLAATSSSVDLLLERLCLEG-- 145 (1125)
Q Consensus 73 ~~AleLL~~IS~~-~P-~LFk~~v~~L~~lL~d~--n~~vve~aLkaLAk~gk~i-~e~~~~~~s~l~~~L~~lAleG-- 145 (1125)
..+..+|..|+.. +| ..+..-+..|...+.+. ++.+...+|++|..+...+ ++.+......+.+.|.++...+
T Consensus 107 ~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 186 (876)
T 1qgr_A 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (876)
T ss_dssp CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCC
Confidence 5566677776664 35 44444567788888777 7777888999998776443 2223334455666677666555
Q ss_pred ChHHHHHHHHHHHhhcCCCcc-----chHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccchhH-HHHHHHHH
Q 001196 146 SRRQAKYAVHALAAITKDDGL-----KSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRES-EIEEFIKS 217 (1125)
Q Consensus 146 TPrqAKyAVr~LaAls~d~~~-----~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~-eI~~fIiK 217 (1125)
++..-..|++||..+...-+. .....++..|...+...+ --...+.+|+.|+...|..|..+.. .|..+++.
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (876)
T 1qgr_A 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (876)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 566667899998765532110 001124555555444333 2245788899999999988877655 77777665
Q ss_pred hhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCC------------------cc--cccccchHHHHHHHHHh
Q 001196 218 KILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPV------------------KD--AHIRPGIDDLLGILKSM 277 (1125)
Q Consensus 218 ~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~------------------~~--~~~~~~~~~llkLL~~l 277 (1125)
.+ . +.++. .+..|+.++.+.+... .. ...+.....++..|..+
T Consensus 267 ~~--~-------------~~~~~--v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 329 (876)
T 1qgr_A 267 AM--K-------------SDIDE--VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (876)
T ss_dssp HH--T-------------CSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred Hh--c-------------CCchH--HHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHH
Confidence 32 1 01111 2334555444433211 00 00011223344444444
Q ss_pred hhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhH
Q 001196 278 LSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYV 347 (1125)
Q Consensus 278 l~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L 347 (1125)
+...+ .+. ..+-...|-+|+.+|-.|+......+-+..+..+...++|+.+.||..-+.-|....
T Consensus 330 l~~~~--~d~---~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 330 LTKQD--END---DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp TTCCC--SSC---CTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred hhccc--ccc---cccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 32111 110 112347888999999999986544444445555556678999999998877665443
No 12
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.85 E-value=0.06 Score=64.92 Aligned_cols=233 Identities=9% Similarity=-0.000 Sum_probs=144.2
Q ss_pred hhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChH
Q 001196 69 AQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRR 148 (1125)
Q Consensus 69 ~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPr 148 (1125)
......|+..|..|+..+|.+|..|...++.+|.+++..+...+|.+|+..+.. ..-..+...|..++..-++.
T Consensus 327 ~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~------~nv~~iv~eL~~~l~~~d~e 400 (618)
T 1w63_A 327 KNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG------NNIRGMMKELLYFLDSCEPE 400 (618)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS------SSTHHHHHHHHHHHHHCCHH
T ss_pred CchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc------ccHHHHHHHHHHHHHhCCHH
Confidence 356678999999999999999999999999999998888899999999988643 11244667777787777787
Q ss_pred HHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCC
Q 001196 149 QAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKI 226 (1125)
Q Consensus 149 qAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~ 226 (1125)
-...++++|+.++..-. ..+...+..|++.|.... .....+.+|-+|.+..|+....-...+..++- .+.
T Consensus 401 ~r~~~v~~I~~la~k~~-~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~-----~~~-- 472 (618)
T 1w63_A 401 FKADCASGIFLAAEKYA-PSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAIL-----GDY-- 472 (618)
T ss_dssp HHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHH-----HCC--
T ss_pred HHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHh-----ccc--
Confidence 77888888887665321 123445666776666553 33447788888988888654322222223221 111
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCccc---cc---ccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHH
Q 001196 227 RNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDA---HI---RPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLA 300 (1125)
Q Consensus 227 ~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~---~~---~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLa 300 (1125)
..... +++ ++-++..+.--+.+. .. ...-..++.+|..++..- .+-...|++
T Consensus 473 ---------~~~~~--~~~-~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----------~~~~~vr~~ 530 (618)
T 1w63_A 473 ---------SQQPL--VQV-AAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN----------MSTSVTRGY 530 (618)
T ss_dssp ---------SCSHH--HHH-HHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST----------TCCHHHHHH
T ss_pred ---------ccHHH--HHH-HHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc----------CCCHHHHHH
Confidence 11111 121 344433332111110 00 011233677777765211 123567899
Q ss_pred HHHHHHhhhcccCCCCCHHHHHHHhhcccCCchhHHHH
Q 001196 301 SAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKL 338 (1125)
Q Consensus 301 Aa~sLLKLAr~~d~~Itp~~F~~La~lvQD~~~eVR~~ 338 (1125)
+-.++.||+.+.... .+.....+....+|..++||.+
T Consensus 531 ~lta~~Kl~~~~~~~-~~~l~~~L~~~~~~~d~evrdR 567 (618)
T 1w63_A 531 ALTAIMKLSTRFTCT-VNRIKKVVSIYGSSIDVELQQR 567 (618)
T ss_dssp HHHHHHHHHTTCSSC-HHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHhCcch-HHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999864322 2233333334568888899877
No 13
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.76 E-value=0.0021 Score=57.62 Aligned_cols=51 Identities=14% Similarity=0.293 Sum_probs=42.2
Q ss_pred CcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecCcceEEEe
Q 001196 824 EDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELL 878 (1125)
Q Consensus 824 ~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~~Ek~~~~ 878 (1125)
.--||.+|.-.|. |+.||.|+|++.+.. ++..|.|+||..|.|... .++-+
T Consensus 9 ~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dyn~e~v~~~--~lrpl 59 (74)
T 2equ_A 9 DFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDGVIRCLKRM--HIKAM 59 (74)
T ss_dssp CCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTSCEEEECGG--GEECC
T ss_pred CCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecCCeEEecHH--HCeeC
Confidence 4458999999999 999999999999876 789999999988877544 45444
No 14
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=96.73 E-value=0.0028 Score=54.08 Aligned_cols=46 Identities=26% Similarity=0.433 Sum_probs=41.7
Q ss_pred cCceEEEecCCCCceEEEEEEEecCCCCeeEEEecC-CCceeeecCc
Q 001196 827 IGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLDK 872 (1125)
Q Consensus 827 VG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdD-GD~E~L~L~~ 872 (1125)
+|..|-..|..|..||.|+|++.++..+...|.|.| |..|.+.+..
T Consensus 6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~ 52 (59)
T 1mhn_A 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD 52 (59)
T ss_dssp TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHH
Confidence 799999999999999999999999888899999977 9999887763
No 15
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.72 E-value=0.034 Score=66.46 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHH
Q 001196 70 QFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQ 149 (1125)
Q Consensus 70 ~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrq 149 (1125)
.....|++.|..|...+|.+|..|...+...+ +++..+...+|.+|++.+.. ..-..++..|..|....++.-
T Consensus 297 ~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~------~nv~~iv~~L~~~l~~~d~~~ 369 (591)
T 2vgl_B 297 EVQYVALRNINLIVQKRPEILKQEIKVFFVKY-NDPIYVKLEKLDIMIRLASQ------ANIAQVLAELKEYATEVDVDF 369 (591)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT-TSCHHHHHHHHHHHHHTCCS------STHHHHHHHHHHHTTSSCHHH
T ss_pred cHHHHHHHHHHHHHHhChHHHHHHHHhheecc-CChHHHHHHHHHHHHHHCCh------hhHHHHHHHHHHHHhcCCHHH
Confidence 45677889999999999999988866543222 23356677888888887632 112346777888888888888
Q ss_pred HHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhcccccc
Q 001196 150 AKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFE 205 (1125)
Q Consensus 150 AKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe 205 (1125)
.+.|+++|..++..-. .....++..|++.|.... -....+.+|..|.+..|...+
T Consensus 370 r~~~v~aI~~la~~~~-~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~ 426 (591)
T 2vgl_B 370 VRKAVRAIGRCAIKVE-QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYE 426 (591)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHHhCh-hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHH
Confidence 8888888886665422 234566777777776554 223457788888888887653
No 16
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=96.71 E-value=0.0032 Score=54.55 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=40.5
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeee
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 869 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~ 869 (1125)
.||-.|.-.||+|+.||++.|++++..+.-..|.|-||.+|.|.
T Consensus 11 ~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e~L~ 54 (66)
T 2l8d_A 11 ADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTELALK 54 (66)
T ss_dssp CSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEEeec
Confidence 48889999999999999999999999989999999889888775
No 17
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=96.66 E-value=0.0034 Score=55.29 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=41.8
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecC
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLD 871 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~ 871 (1125)
+.--||-+|---| .|..||.|+|++.+.. +...|.|+||..|.|.+.
T Consensus 5 ~~~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~~ 51 (67)
T 3p8d_A 5 SEFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (67)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred cccccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceEEEeHH
Confidence 4456999999999 9999999999999988 679999999999988764
No 18
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.64 E-value=0.0039 Score=54.23 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=40.6
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeee
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 869 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~ 869 (1125)
.||-.|.-.||.|+.||.++|++++....-..|.|-||.+|.|.
T Consensus 14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e~L~ 57 (68)
T 2dig_A 14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELELK 57 (68)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEEEec
Confidence 48999999999999999999999999888999999888888774
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.63 E-value=0.099 Score=58.54 Aligned_cols=264 Identities=13% Similarity=0.077 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCc-----cccHHHHHHHHhhccchhHHHHHHHHHHhccchhh
Q 001196 51 EHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLL-----GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIRE 125 (1125)
Q Consensus 51 ShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LF-----k~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e 125 (1125)
..|+.|+..+.. +.+......|..+|..|+...|... .+.+..|+.+|.+.++.+.+.++.+|.+++...++
T Consensus 64 ~~i~~L~~~L~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~ 140 (450)
T 2jdq_A 64 GVVARFVEFLKR---KENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140 (450)
T ss_dssp THHHHHHHHHTC---TTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHCC---CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHH
Confidence 567777774432 1133455678888888887555422 34568899999988888889999999987643221
Q ss_pred hh-cccChhHHHHHHHHhhc-CChHHHHHHHHHHHhhcCCC----ccchHHHHHHHHHHhhhcCC--CCchHHHHHHHHH
Q 001196 126 QL-AATSSSVDLLLERLCLE-GSRRQAKYAVHALAAITKDD----GLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIA 197 (1125)
Q Consensus 126 ~~-~~~~s~l~~~L~~lAle-GTPrqAKyAVr~LaAls~d~----~~~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA 197 (1125)
.. .......++.|.++... .++.....|+.+|..++... .......++..|+..|...+ -....+.+|+.|+
T Consensus 141 ~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS 220 (450)
T ss_dssp HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 10 11123456777777764 56778889999998887543 11223456667777676544 2334556666666
Q ss_pred hhccccccch-hHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchH-HHHHHHH
Q 001196 198 QTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGID-DLLGILK 275 (1125)
Q Consensus 198 ~~aP~vfe~~-~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~-~llkLL~ 275 (1125)
...+...... ...++..++. +|.. . + ...+..|+.+|.|.+.+... .....++ .++..|.
T Consensus 221 ~~~~~~~~~~~~~~~i~~L~~-ll~~-~-------------~--~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~ 282 (450)
T 2jdq_A 221 DGPNDKIQAVIDAGVCRRLVE-LLMH-N-------------D--YKVVSPALRAVGNIVTGDDI-QTQVILNCSALQSLL 282 (450)
T ss_dssp SSSHHHHHHHHHTTTHHHHHH-HTTC-S-------------C--HHHHHHHHHHHHHHTTSCHH-HHHHHHTTTHHHHHH
T ss_pred CCCcHHHHHHHHcCcHHHHHH-HHCC-C-------------c--hhHHHHHHHHHHHHhhCChH-HHHHHHHCccHHHHH
Confidence 5443222110 1223344443 2211 0 1 13456788888887755332 1011111 2455555
Q ss_pred HhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhccc----CCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhH
Q 001196 276 SMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW----DHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYV 347 (1125)
Q Consensus 276 ~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~----d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L 347 (1125)
.++..+ ...+|..|..+|-.|+... ...+....+..+..+++++.+.||..-+.-|....
T Consensus 283 ~ll~~~------------~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 283 HLLSSP------------KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNAT 346 (450)
T ss_dssp HHTTCS------------SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHcCC------------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 554221 2478889999999998632 11111123334445667788888887555554443
No 20
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.56 E-value=0.0041 Score=53.96 Aligned_cols=47 Identities=26% Similarity=0.373 Sum_probs=41.9
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecC-CCceeeecCc
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLDK 872 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdD-GD~E~L~L~~ 872 (1125)
-+|..|...|..|..||.++|.+.++..+...|.|.| |..|.+.+..
T Consensus 10 ~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~ 57 (64)
T 4a4f_A 10 KVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLN 57 (64)
T ss_dssp CTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHH
Confidence 4899999999999999999999999988899999955 8999887653
No 21
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=96.50 E-value=0.0031 Score=60.91 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=40.1
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeee
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLR 869 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~ 869 (1125)
+.+++|.||-..|+++.-||.|+|+.+ ...++.+|.+|||++..|.
T Consensus 3 ~~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~~v~ 48 (123)
T 2g3r_A 3 MNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVL 48 (123)
T ss_dssp --CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred CccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCeeEee
Confidence 567899999999998879999999995 7778999999999998775
No 22
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=96.49 E-value=0.0047 Score=51.61 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=39.0
Q ss_pred cCceEEEecCCCCceEEEEEEEecCCCCeeEEEecC-CCceeeecCc
Q 001196 827 IGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLDK 872 (1125)
Q Consensus 827 VG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdD-GD~E~L~L~~ 872 (1125)
+|..|-..|..|+.||.|+|.+.++..+...|.|-| |..|.+.+..
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~ 50 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSN 50 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHH
Confidence 789999999999999999999999888889999955 9999887753
No 23
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.43 E-value=0.0053 Score=56.31 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=41.5
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecC
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLD 871 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~ 871 (1125)
..-.||-+|---| .|..||.|+|++.+.. +...|.|+||..+.|...
T Consensus 20 ~~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~etvk~~ 66 (85)
T 3qii_A 20 SEFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 66 (85)
T ss_dssp -CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred cccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeEEecHH
Confidence 4556999999999 9999999999999988 679999999999988654
No 24
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.41 E-value=0.12 Score=63.06 Aligned_cols=250 Identities=11% Similarity=0.056 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhhCC-cCccccHHHHH----HHHhhcc--chhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcC
Q 001196 73 QSCMDILGILARFSP-LLLGGTEEELV----NLLKEEN--EIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEG 145 (1125)
Q Consensus 73 ~~AleLL~~IS~~~P-~LFk~~v~~L~----~lL~d~n--~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleG 145 (1125)
..+..+|..|....+ .-|..+...|+ .+|.... ..+.+.++.++..+...+...+.+.-..+.+.|.......
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc
Confidence 456788888888888 77777765554 4444432 2567778888877655444455555456777777665554
Q ss_pred -ChHHHHHHHHHHHhhcCCCcc---chHHHHHHHHHHhhhcC--C--CCchHHHHHHHHHhhccccccchhHHHHHHHHH
Q 001196 146 -SRRQAKYAVHALAAITKDDGL---KSLSVLYKRLVDMLEEK--T--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKS 217 (1125)
Q Consensus 146 -TPrqAKyAVr~LaAls~d~~~---~~ls~L~e~Lv~~Le~~--s--~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK 217 (1125)
.+..-..|+.+|..++..-+. .++..++..|+..|... + -..+.+.+||.|+...+..|..+-..|...+.+
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 565556677777655532111 23566777777777652 2 336788999999998888888777777777654
Q ss_pred hhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcc---------cccccchHHHHHHHHHhhhcCCCcCCcC
Q 001196 218 KILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKD---------AHIRPGIDDLLGILKSMLSYGEMSEDIE 288 (1125)
Q Consensus 218 ~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~---------~~~~~~~~~llkLL~~ll~~GEL~~~~~ 288 (1125)
- +.... + .++.+|.+. ....+..+++++...+.++.. ....+.+..++.+|..+....
T Consensus 742 ~-~~~~~--~-~~d~~~~~~--~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~------- 808 (876)
T 1qgr_A 742 A-SQAQV--D-KSDYDMVDY--LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDE------- 808 (876)
T ss_dssp H-HTCCC--C-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCS-------
T ss_pred H-HhccC--C-CCChHHHHH--HHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCC-------
Confidence 2 22111 0 011111111 123344555655554443322 233445555565555443111
Q ss_pred CChhhHhhHHHHHHHHHHhhhcccCC-CCC----HHHHHHHhh-cccCCchhHHHH
Q 001196 289 SSSVDKAHLRLASAKAVLRLSRQWDH-KIP----VDVFHLTLR-TPEISFPQAKKL 338 (1125)
Q Consensus 289 tp~~~kArLRLaAa~sLLKLAr~~d~-~It----p~~F~~La~-lvQD~~~eVR~~ 338 (1125)
. .-..+|-+|+.+|=.|+..+.. .+. ...+..+.. ...|+.+.||..
T Consensus 809 ~---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~ 861 (876)
T 1qgr_A 809 D---HTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTL 861 (876)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHH
T ss_pred C---CCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHH
Confidence 0 0236789999999999987644 331 112222332 445666666654
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.29 E-value=0.2 Score=58.18 Aligned_cols=262 Identities=13% Similarity=0.046 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCC--cC----ccccHHHHHHHHhhcc-chhHHHHHHHHHHhccc
Q 001196 50 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSP--LL----LGGTEEELVNLLKEEN-EIIKEGILHVLAKAGGT 122 (1125)
Q Consensus 50 kShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P--~L----Fk~~v~~L~~lL~d~n-~~vve~aLkaLAk~gk~ 122 (1125)
.+.|+.|+..+.. + +......|...|..+....+ .. -.+.+..|+.+|...+ +.+...++.+|.+++..
T Consensus 73 ~~~l~~lv~~L~s---~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 73 LESLPAMIGGVYS---D-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp --CHHHHHHHHTS---S-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcC---C-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 4568899886643 2 23344556677766655443 21 1245789999999865 67888889999887643
Q ss_pred hhhh-hcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccc--hH--HHHHHHHHHhhhcC-C--CCchHHHHHH
Q 001196 123 IREQ-LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK--SL--SVLYKRLVDMLEEK-T--HLPAVLQSLG 194 (1125)
Q Consensus 123 i~e~-~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~--~l--s~L~e~Lv~~Le~~-s--~l~T~L~aLg 194 (1125)
-++. ........++.|..+...+++....+|+.+|..++.+.... .+ ..++..|+..|... + -....+.+|+
T Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 149 TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2211 11123467888888888888988899999999887653310 00 12355666666333 2 3455667777
Q ss_pred HHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchH-HHHHH
Q 001196 195 CIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGID-DLLGI 273 (1125)
Q Consensus 195 qIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~-~llkL 273 (1125)
.|+...|..-......++..+++ +|.. . + ...+..|+.+|.|.+..... .....+. .++..
T Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~-lL~~-~-------------~--~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~v~~ 290 (528)
T 4b8j_A 229 NFCRGKPQPSFEQTRPALPALAR-LIHS-N-------------D--EEVLTDACWALSYLSDGTND-KIQAVIEAGVCPR 290 (528)
T ss_dssp HHHCSSSCCCHHHHTTHHHHHHH-HTTC-C-------------C--HHHHHHHHHHHHHHTSSCHH-HHHHHHHTTCHHH
T ss_pred HHHcCCCCCcHHHHHHHHHHHHH-HHCC-C-------------C--HHHHHHHHHHHHHHHcCCHH-HHHHHHHcCHHHH
Confidence 77776543322223444555543 2321 0 1 12345678888876644322 1111111 13444
Q ss_pred HHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhccc----CCCCCHHHHHHHhhcccCC-chhHHHHHHHHHHH
Q 001196 274 LKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW----DHKIPVDVFHLTLRTPEIS-FPQAKKLFLSKVHQ 345 (1125)
Q Consensus 274 L~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~----d~~Itp~~F~~La~lvQD~-~~eVR~~Fl~KL~k 345 (1125)
|..++..+ ...+|..|..+|-.|+... ...+....+..|..+++++ .+.||+.-+.-|..
T Consensus 291 Lv~lL~~~------------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 291 LVELLLHP------------SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHTTCS------------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCC------------ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 44444222 1367888888888888642 1222223344444556666 77777765544443
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.28 E-value=0.05 Score=63.39 Aligned_cols=227 Identities=14% Similarity=0.090 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCc-----CccccHHHHHHHHhhccchhHHHHHHHHHHhccch-h
Q 001196 51 EHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPL-----LLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTI-R 124 (1125)
Q Consensus 51 ShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~-----LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i-~ 124 (1125)
..|+.|+..+.. .+......|...|..|+...|. +-.+.+..|+.+|.+.+..+...++.+|+.+...- +
T Consensus 173 g~i~~Lv~lL~~----~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 173 DAVPLFIQLLYT----GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp TCHHHHHHHHHH----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred CCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence 446666664442 2335667788888888876553 22356789999998877778888888888775321 1
Q ss_pred hhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccch---H-HHHHHHHHHhhhcCC--CCchHHHHHHHHHh
Q 001196 125 EQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKS---L-SVLYKRLVDMLEEKT--HLPAVLQSLGCIAQ 198 (1125)
Q Consensus 125 e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~---l-s~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~ 198 (1125)
.........+++.|.++...+++..-..|+.+|..++....... + ..++..|+..|...+ -....+.+|+.|+.
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 11111234678888888888888878889999987775432110 1 134566666666444 23345667777665
Q ss_pred hccccccch-hHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccch-HHHHHHHHH
Q 001196 199 TAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGI-DDLLGILKS 276 (1125)
Q Consensus 199 ~aP~vfe~~-~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~-~~llkLL~~ 276 (1125)
..+...... ...++..++. +|... ....+..|+.+|.|.+.+... .....+ ..++..|..
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~-lL~~~----------------~~~vr~~A~~aL~~l~~~~~~-~~~~~~~~~~l~~L~~ 390 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRL-LLSSP----------------KENIKKEACWTISNITAGNTE-QIQAVIDANLIPPLVK 390 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHH-HTTCS----------------CHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHH-HHcCC----------------CHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHH
Confidence 444322111 1123333332 22210 123456788888887654322 111111 123344444
Q ss_pred hhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcc
Q 001196 277 MLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ 311 (1125)
Q Consensus 277 ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~ 311 (1125)
++..+ -..+|..|+.+|-.|+..
T Consensus 391 lL~~~------------~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 391 LLEVA------------EYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHS------------CHHHHHHHHHHHHHHHHH
T ss_pred HHhcC------------CHHHHHHHHHHHHHHHhc
Confidence 44222 136888999999999874
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.26 E-value=0.094 Score=58.69 Aligned_cols=228 Identities=15% Similarity=0.097 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcC----c-cccHHHHHHHHhh-ccchhHHHHHHHHHHhccch
Q 001196 50 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL----L-GGTEEELVNLLKE-ENEIIKEGILHVLAKAGGTI 123 (1125)
Q Consensus 50 kShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L----F-k~~v~~L~~lL~d-~n~~vve~aLkaLAk~gk~i 123 (1125)
...|+.|+..+.. .+......|...|..|+...|.. + .+.+..|+.+|.+ .+..+...++.+|.++....
T Consensus 106 ~~~i~~L~~lL~~----~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 106 AGAVPIFIELLSS----EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp TTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHcC----CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 3455666653321 23456677889999999877642 2 2557889999985 56678888888888876332
Q ss_pred -hhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccc----hHHHHHHHHHHhhhcCC--CCchHHHHHHHH
Q 001196 124 -REQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK----SLSVLYKRLVDMLEEKT--HLPAVLQSLGCI 196 (1125)
Q Consensus 124 -~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~----~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqI 196 (1125)
+.........+++.|.++...+++.....|+.+|..++...... .-..++..|+..|...+ -....+.+|+.|
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 11111223668888999888888888888999998777643210 01124666666665443 234456777777
Q ss_pred Hhhccccccch-hHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccch-HHHHHHH
Q 001196 197 AQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGI-DDLLGIL 274 (1125)
Q Consensus 197 A~~aP~vfe~~-~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~-~~llkLL 274 (1125)
+...+...... ...++..++. +|..+ + ...+..|+.+|.|.+.+... .....+ ..++..|
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~-ll~~~--------------~--~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L 323 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLH-LLSSP--------------K--ESIKKEACWTISNITAGNRA-QIQTVIDANIFPAL 323 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHH-HTTCS--------------S--HHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHH-HHcCC--------------C--HHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHH
Confidence 66444321110 1123333332 22211 1 13456788888887754332 111111 1244455
Q ss_pred HHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcc
Q 001196 275 KSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ 311 (1125)
Q Consensus 275 ~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~ 311 (1125)
..++..+ -..+|..|+.+|-.|+..
T Consensus 324 ~~~l~~~------------~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 324 ISILQTA------------EFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHS------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC------------CHHHHHHHHHHHHHHHcC
Confidence 5544322 146899999999999864
No 28
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.18 E-value=0.13 Score=61.94 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=70.7
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHH
Q 001196 17 VLQDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEE 96 (1125)
Q Consensus 17 ~ar~ELLKRLg~k~~l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~ 96 (1125)
-+..-|.|-|.+.+++. +.+-.|+-..+-+.+.++.|+..+.....+.+......|.-.|..|...+|.+.......
T Consensus 107 l~in~l~kDL~~~n~~v---r~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~ 183 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFV---QGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPA 183 (618)
T ss_dssp HHHHHHHHHHSCSSSHH---HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGG
T ss_pred HHHHHHHHhcCCCCHhH---HHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 34566777777777632 344444445555677766666655443333344455667788888888999998888888
Q ss_pred HHHHHhhccchhHHHHHHHHHHhccc
Q 001196 97 LVNLLKEENEIIKEGILHVLAKAGGT 122 (1125)
Q Consensus 97 L~~lL~d~n~~vve~aLkaLAk~gk~ 122 (1125)
|..+|.+.|..++..++.+|..++..
T Consensus 184 l~~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 184 TKNLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp TTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence 88899888888888888888877643
No 29
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.11 E-value=0.011 Score=54.77 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=42.3
Q ss_pred cccCceEEEecCCCCceEEEEEEEecCCCCeeEEEec-CCCceeeecCc
Q 001196 825 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYD-DEDVEVLRLDK 872 (1125)
Q Consensus 825 ~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~Yd-DGD~E~L~L~~ 872 (1125)
--||..|-..|..|+.||.|+|+..++..+...|.|. =|..|.+.+..
T Consensus 11 ~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~ 59 (88)
T 1g5v_A 11 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD 59 (88)
T ss_dssp CCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGG
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHH
Confidence 3489999999999999999999999998889999995 48888887763
No 30
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.11 E-value=0.1 Score=60.34 Aligned_cols=218 Identities=11% Similarity=0.043 Sum_probs=122.0
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHH
Q 001196 95 EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYK 174 (1125)
Q Consensus 95 ~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e 174 (1125)
..|..++.+++..+...++.+|..++..++... ....+.+.|..++....+..=..|+.+|..+...-+......++.
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~--~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~ 167 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSPSD--LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQ 167 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH--HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 455555566777788888999998876554221 223477888888876666555567777776665433333344555
Q ss_pred HHHHhhhcCC--CCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 001196 175 RLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLV 252 (1125)
Q Consensus 175 ~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~Lv 252 (1125)
.+...+...+ --.+.+.+|+.|+...+.- .....|...++. ++ .+ ..| ..+..|+.+|.
T Consensus 168 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~-~~-~d--------~~~-------~vr~~a~~~l~ 228 (588)
T 1b3u_A 168 YFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSN-LA-SD--------EQD-------SVRLLAVEACV 228 (588)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHH-HH-TC--------SCH-------HHHTTHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHH-Hh-cC--------CcH-------HHHHHHHHHHH
Confidence 5544444443 2245678888888766531 112334444332 22 10 011 23445666666
Q ss_pred HhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccC-CCCCHHHHHHHhhcccCC
Q 001196 253 KSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWD-HKIPVDVFHLTLRTPEIS 331 (1125)
Q Consensus 253 N~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d-~~Itp~~F~~La~lvQD~ 331 (1125)
..+...... .....++.+|..++.. .-.+.|.+|+.+|-.|+.... ..+.+..+..+..+++|+
T Consensus 229 ~l~~~~~~~---~~~~~~~~~l~~~~~d------------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 293 (588)
T 1b3u_A 229 NIAQLLPQE---DLEALVMPTLRQAAED------------KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 293 (588)
T ss_dssp HHHHHSCHH---HHHHHTHHHHHHHHTC------------SSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCS
T ss_pred HHHHhCCHH---HHHHHHHHHHHHHccC------------CCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCC
Confidence 554333221 1122344555544411 114689999999999987532 112223344455677899
Q ss_pred chhHHHHHHHHHHHhHh
Q 001196 332 FPQAKKLFLSKVHQYVK 348 (1125)
Q Consensus 332 ~~eVR~~Fl~KL~k~L~ 348 (1125)
.+.||..-+.-|.....
T Consensus 294 ~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 294 EAEVRAAASHKVKEFCE 310 (588)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999986666554443
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.09 E-value=0.042 Score=63.86 Aligned_cols=228 Identities=17% Similarity=0.121 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcC----c-cccHHHHHHHH-hhccchhHHHHHHHHHHhccchh
Q 001196 51 EHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL----L-GGTEEELVNLL-KEENEIIKEGILHVLAKAGGTIR 124 (1125)
Q Consensus 51 ShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L----F-k~~v~~L~~lL-~d~n~~vve~aLkaLAk~gk~i~ 124 (1125)
..|+.|+..+.. .+......|...|..|+...|.. + .+.+..|+.+| ...+..+...++.+|+.+....+
T Consensus 160 g~i~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 160 GAVPIFVKLLGS----SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp THHHHHHHHTTC----SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred CcHHHHHHHhcC----CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 356666663322 23456677889999998776642 1 24578889988 45666778888888887754322
Q ss_pred hhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccch----HHHHHHHHHHhhhcCC--CCchHHHHHHHHHh
Q 001196 125 EQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKS----LSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQ 198 (1125)
Q Consensus 125 e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~----ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~ 198 (1125)
..........++.|..+...+++.....|+.+|..++....... -..++..|+..|...+ -....+.+|+.|+.
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 11111235678889999888999988999999998776543210 0123556666666554 23445667777765
Q ss_pred hccccccch-hHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchH-HHHHHHHH
Q 001196 199 TAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGID-DLLGILKS 276 (1125)
Q Consensus 199 ~aP~vfe~~-~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~-~llkLL~~ 276 (1125)
..+...... ...++..++. +|.... ....+..|+.+|.|.+.+... .....+. .++..|..
T Consensus 316 ~~~~~~~~~~~~~~l~~L~~-lL~~~~---------------~~~v~~~A~~~L~nl~~~~~~-~~~~~~~~~~i~~L~~ 378 (528)
T 4b8j_A 316 GDDAQTQCIIDHQALPCLLS-LLTQNL---------------KKSIKKEACWTISNITAGNKD-QIQAVINAGIIGPLVN 378 (528)
T ss_dssp SCHHHHHHHHTTTHHHHHHH-HHHSCC---------------CHHHHHHHHHHHHHHHTSCHH-HHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHhhhHHHHHH-HHcCCC---------------cHHHHHHHHHHHHHHHCCCHH-HHHHHHHCCCHHHHHH
Confidence 443322111 1223444432 332210 123456788888887754322 1111111 23344444
Q ss_pred hhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcc
Q 001196 277 MLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ 311 (1125)
Q Consensus 277 ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~ 311 (1125)
++..+ -..+|..|+.+|-.|+..
T Consensus 379 lL~~~------------~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 379 LLQTA------------EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHS------------CHHHHHHHHHHHHHHHHH
T ss_pred HHhcC------------CHHHHHHHHHHHHHHHcC
Confidence 44222 135788899999888865
No 32
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.98 E-value=0.063 Score=54.97 Aligned_cols=220 Identities=14% Similarity=0.070 Sum_probs=124.3
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHhccchhhh-hcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccch--
Q 001196 92 GTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKS-- 168 (1125)
Q Consensus 92 ~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~-~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~-- 168 (1125)
+.+..|+.+|...++.+...++.+|..+...-++. ..-.....++.|.++...+++..-..|+.+|..++.......
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 34688999999888878888899998876432211 111244678889999988998888999999998876532110
Q ss_pred --HHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccch-hHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHH
Q 001196 169 --LSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLL 243 (1125)
Q Consensus 169 --ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~-~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~a 243 (1125)
-...+..|+..|...+ -....+.+|+.|+...|.....- ...++..+++ +|..+ + ...
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~--------------~--~~~ 144 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK-LLTST--------------D--SEV 144 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTTCS--------------C--HHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHcCC--------------C--HHH
Confidence 1124666666666544 23445566666665444322211 1223444432 33210 1 234
Q ss_pred HHHHHHHHHHhhcCCcccccccc-hHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccC----CCCCH
Q 001196 244 KIYGIKTLVKSYLPVKDAHIRPG-IDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWD----HKIPV 318 (1125)
Q Consensus 244 KI~ALK~LvN~Lla~~~~~~~~~-~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d----~~Itp 318 (1125)
+..|+.+|.|.+....... ... ...++..|..++..+ ...+|..|..+|-.||.... ..+..
T Consensus 145 ~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll~~~------------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 211 (252)
T 4hxt_A 145 QKEAARALANIASGPDEAI-KAIVDAGGVEVLVKLLTST------------DSEVQKEAARALANIASGPTSAIKAIVDA 211 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHHTTCS------------CHHHHHHHHHHHHHHTTSBHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHCcCHHHHHHHHCCC------------CHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 6789999999876533210 111 112455565555221 14788999999999986321 11111
Q ss_pred HHHHHHhhcccCCchhHHHHHHH
Q 001196 319 DVFHLTLRTPEISFPQAKKLFLS 341 (1125)
Q Consensus 319 ~~F~~La~lvQD~~~eVR~~Fl~ 341 (1125)
..+..+..+++++.+.||..=+.
T Consensus 212 ~~i~~L~~ll~~~~~~v~~~a~~ 234 (252)
T 4hxt_A 212 GGVEVLQKLLTSTDSEVQKEAQR 234 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCcHHHHHHHHH
Confidence 12333344455555555554333
No 33
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.96 E-value=0.54 Score=56.91 Aligned_cols=123 Identities=16% Similarity=0.152 Sum_probs=80.8
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcc--CcchhhhHHHHHHHHHHHHhhCCcCcc--cc
Q 001196 18 LQDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQK--SSANAQFMQSCMDILGILARFSPLLLG--GT 93 (1125)
Q Consensus 18 ar~ELLKRLg~k~~l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~--s~~~~~~~~~AleLL~~IS~~~P~LFk--~~ 93 (1125)
+..-|.|=|.+.+++ ++.|-.|+-..+.+.+.++.|+..+.+.. .+.+......|.-.|..|-..+|.++. +.
T Consensus 112 ~iN~l~kDl~~~n~~---ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~ 188 (621)
T 2vgl_A 112 INNAIKNDLASRNPT---FMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDW 188 (621)
T ss_dssp HHHHHHHHHHSCCHH---HHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSC
T ss_pred HHHHHHHhcCCCCHH---HHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhH
Confidence 345566666666653 46677777777888888888887766554 333333335566666666779999999 77
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhh
Q 001196 94 EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCL 143 (1125)
Q Consensus 94 v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAl 143 (1125)
.+.|.++|.+.|..++..++.+|..+...-+..+.+....++..|.++..
T Consensus 189 ~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~ 238 (621)
T 2vgl_A 189 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVT 238 (621)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHh
Confidence 89999999988888888888888766432222222223334455555543
No 34
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.85 E-value=0.66 Score=54.43 Aligned_cols=295 Identities=11% Similarity=0.093 Sum_probs=152.9
Q ss_pred HHHHHHhccCCc--HHH---HHHHHHHHhc-c---cccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCc
Q 001196 20 DDLLKILGAKHR--LYD---FLSTLSMKCS-Y---LLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLL 90 (1125)
Q Consensus 20 ~ELLKRLg~k~~--l~e---tlk~LL~RsS-~---lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LF 90 (1125)
.++++.|.+..+ .+. .++-||.+-. + .+++.--||.|+..+... .+......|...|..|+...+..-
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~---~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 567777777654 222 3333332221 1 345566788888865432 233445567788999988776532
Q ss_pred -----cccHHHHHHHHhhccchhHHHHHHHHHHhccchhhh-hcccChhHHHHHHHHhhcCCh-----HHHHHHHHHHHh
Q 001196 91 -----GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-LAATSSSVDLLLERLCLEGSR-----RQAKYAVHALAA 159 (1125)
Q Consensus 91 -----k~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~-~~~~~s~l~~~L~~lAleGTP-----rqAKyAVr~LaA 159 (1125)
.+.+..|+.+|...+..+.+.++.+|.+++..-++. ..-.....++.|..+...... .....|+.+|..
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 245688999999988889999999999875321110 011123344555555544332 223566777765
Q ss_pred hcCCCcc----chHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccch-hHHHHHHHHHhhhcccCCCCCCCCC
Q 001196 160 ITKDDGL----KSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKA 232 (1125)
Q Consensus 160 ls~d~~~----~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~-~~eI~~fIiK~LLl~~~~~~~~~~~ 232 (1125)
++..... .....++..|+..|.... -....+.+|+.|+...+...... ...++..++. +|...
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~-lL~~~--------- 305 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK-LLGAT--------- 305 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHH-HHTCS---------
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHH-HhcCC---------
Confidence 5554321 223445566666665544 23344556666665333221110 1122333332 23211
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchH-HHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcc
Q 001196 233 CWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGID-DLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ 311 (1125)
Q Consensus 233 eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~-~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~ 311 (1125)
....+..|+++|.|.+.+... .....+. .++..|..++.. ....+|..|+.+|-.||..
T Consensus 306 -------~~~v~~~a~~aL~nl~~~~~~-~~~~i~~~g~l~~L~~LL~~------------~~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 306 -------ELPIVTPALRAIGNIVTGTDE-QTQKVIDAGALAVFPSLLTN------------PKTNIQKEATWTMSNITAG 365 (529)
T ss_dssp -------CHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTGGGGHHHHTTC------------SSHHHHHHHHHHHHHHHTS
T ss_pred -------ChhHHHHHHHHHHHHHccchH-HHHHHhhcccHHHHHHHHcC------------CCHHHHHHHHHHHHHHhcc
Confidence 123456789998887644321 1111111 123334433321 1235788889898888864
Q ss_pred cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhHHHHHHh
Q 001196 312 WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLF 362 (1125)
Q Consensus 312 ~d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L~~~~Lp~RF~alffL 362 (1125)
.. .....+ +...++..|...|..+....+..++.+|
T Consensus 366 ~~-----~~~~~v----------~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 401 (529)
T 3tpo_A 366 RQ-----DQIQQV----------VNHGLVPFLVGVLSKADFKTQKAAAWAI 401 (529)
T ss_dssp CH-----HHHHHH----------HHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cH-----HHHHHH----------HhcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 21 111111 1123445555566666555666665555
No 35
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=94.82 E-value=0.0015 Score=59.55 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=41.5
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecCcceEEEecC
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLDN 880 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~~Ek~~~~~~ 880 (1125)
-+|.+|--.|. |+.||.|+|++.+.. ++..|.|+||..|.|.+. .++-+..
T Consensus 8 kvGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E~V~~s--~LrPl~~ 58 (81)
T 2ldm_A 8 QINEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI--HVKAFSK 58 (81)
Confidence 37999999999 999999999999854 579999988999988765 3444443
No 36
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=95.79 E-value=0.017 Score=52.07 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=41.9
Q ss_pred cccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecC-CCceeeecC
Q 001196 825 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDD-EDVEVLRLD 871 (1125)
Q Consensus 825 ~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdD-GD~E~L~L~ 871 (1125)
--+|..|-..|..|..||.++|+..+...++..|.|-| |..|.+.+.
T Consensus 10 ~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~ 57 (78)
T 2d9t_A 10 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS 57 (78)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHH
Confidence 34899999999999999999999999877889999955 999998876
No 37
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.66 E-value=0.71 Score=55.10 Aligned_cols=304 Identities=10% Similarity=0.130 Sum_probs=152.8
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccc--cHHHH
Q 001196 20 DDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGG--TEEEL 97 (1125)
Q Consensus 20 ~ELLKRLg~k~~l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~--~v~~L 97 (1125)
.-|.+-|++.+++ ++.+-.|+-..+.+.+.++.|+..+.....+.+......|...|..|...+|.++.. .++.|
T Consensus 89 n~l~kdL~~~n~~---ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l 165 (591)
T 2vgl_B 89 NSFVKDCEDPNPL---IRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSL 165 (591)
T ss_dssp HHHGGGSSSSSHH---HHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCHH---HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHH
Confidence 4455555555553 334445666666688888887665555444444445566778888888899999874 46888
Q ss_pred HHHHhhccchhHHHHHHHHHHhccchhhh-hcccC-hhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHH
Q 001196 98 VNLLKEENEIIKEGILHVLAKAGGTIREQ-LAATS-SSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKR 175 (1125)
Q Consensus 98 ~~lL~d~n~~vve~aLkaLAk~gk~i~e~-~~~~~-s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~ 175 (1125)
..+|.+.++.+...++.+|..++..-++. ..... ..+...|..+.......|. ..+++|..+.+... .....+++.
T Consensus 166 ~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~-~il~~l~~l~~~~~-~~~~~~l~~ 243 (591)
T 2vgl_B 166 RDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI-FILDCLSNYNPKDD-REAQSICER 243 (591)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHH-HHHHHHHTSCCCSH-HHHHHHHHH
T ss_pred HHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHH-HHHHHHHHhCCCCh-HHHHHHHHH
Confidence 89999888889999999999886542211 11111 1233333333322222333 45566654443221 123344555
Q ss_pred HHHhhhcCCCCchHHHHHHHHHhhcc------ccccchhHHHHHHHH-----------------HhhhcccCCC-CCCCC
Q 001196 176 LVDMLEEKTHLPAVLQSLGCIAQTAM------PVFETRESEIEEFIK-----------------SKILRCSNKI-RNDTK 231 (1125)
Q Consensus 176 Lv~~Le~~s~l~T~L~aLgqIA~~aP------~vfe~~~~eI~~fIi-----------------K~LLl~~~~~-~~~~~ 231 (1125)
|...|...+ -.-.+.+..+|..+.+ ..+......+...++ ..|....... ...-.
T Consensus 244 l~~~l~~~~-~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~ 322 (591)
T 2vgl_B 244 VTPRLSHAN-SAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIK 322 (591)
T ss_dssp HTTCSCSST-THHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTT
T ss_pred HHHHHcCCC-hHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 544443222 1222334444443322 111110111111111 0111100000 00000
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcc
Q 001196 232 ACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ 311 (1125)
Q Consensus 232 ~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~ 311 (1125)
.-++-.++....|..||.++.+.+ + ...++.++.-|..++... -..+|-.|+.+|-.||..
T Consensus 323 ~~~~~~~d~~~Ir~~al~~L~~l~----~---~~nv~~iv~~L~~~l~~~------------d~~~r~~~v~aI~~la~~ 383 (591)
T 2vgl_B 323 VFFVKYNDPIYVKLEKLDIMIRLA----S---QANIAQVLAELKEYATEV------------DVDFVRKAVRAIGRCAIK 383 (591)
T ss_dssp TTSCCTTSCHHHHHHHHHHHHHTC----C---SSTHHHHHHHHHHHTTSS------------CHHHHHHHHHHHHHHHTT
T ss_pred hheeccCChHHHHHHHHHHHHHHC----C---hhhHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHHHHh
Confidence 111211111445666777766633 1 112444555444443211 135888899999999987
Q ss_pred cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhc
Q 001196 312 WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKD 349 (1125)
Q Consensus 312 ~d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L~~ 349 (1125)
+.... ...+..|..++.+....|+..-+.-|...+..
T Consensus 384 ~~~~~-~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~ 420 (591)
T 2vgl_B 384 VEQSA-ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRK 420 (591)
T ss_dssp CHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ChhHH-HHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 52111 12334445677888888888776666665543
No 38
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=95.55 E-value=0.026 Score=49.33 Aligned_cols=46 Identities=26% Similarity=0.421 Sum_probs=41.9
Q ss_pred cccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecC
Q 001196 825 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLD 871 (1125)
Q Consensus 825 ~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~ 871 (1125)
--+|..|..-| -|..||.|+|+.-|...+...|+|.||..-|+...
T Consensus 14 f~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~k 59 (66)
T 2eqj_A 14 FEEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWK 59 (66)
T ss_dssp SCTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred ccCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEee
Confidence 34899999999 79999999999999999999999999999988653
No 39
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=95.41 E-value=0.02 Score=57.56 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=41.7
Q ss_pred CCCCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecC
Q 001196 821 VNIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLD 871 (1125)
Q Consensus 821 ~~~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~ 871 (1125)
..+..+||.||---|.+++-||.|+|+.+ ....+..|.+|||....|...
T Consensus 5 ~~~~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k~v~~~ 54 (156)
T 1ssf_A 5 SSGNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVLGK 54 (156)
T ss_dssp ---CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEEEEETT
T ss_pred CCCcchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCeeEeecc
Confidence 34667999999999999999999999996 566779999999999888644
No 40
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.34 E-value=0.31 Score=58.96 Aligned_cols=252 Identities=15% Similarity=0.144 Sum_probs=143.8
Q ss_pred HHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHh--hcCChHHHHHHH
Q 001196 77 DILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLC--LEGSRRQAKYAV 154 (1125)
Q Consensus 77 eLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lA--leGTPrqAKyAV 154 (1125)
=.|..++..+|.+..-.+..|.+-|.+.|+.+...+|++|+.++. ++ .-..+.+.+.+.. ...+|---|.|+
T Consensus 96 L~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~ 169 (621)
T 2vgl_A 96 LFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAEAFAGEIPKILVAGDTMDSVKQSAA 169 (621)
T ss_dssp HHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHHHHTTHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 334445556666655556777788888899888999999999853 21 2234666677776 556787779999
Q ss_pred HHHHhhcCCCccchHH--HHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCC-CC-
Q 001196 155 HALAAITKDDGLKSLS--VLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKI-RN- 228 (1125)
Q Consensus 155 r~LaAls~d~~~~~ls--~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~-~~- 228 (1125)
-||..+...... .+. .+++.|...|.+.+ -..+.+.+|.+|+...|..|......+...+ +.++.....+ .+
T Consensus 170 ~al~kl~~~~p~-~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L-~~ll~~~~~~~~~~ 247 (621)
T 2vgl_A 170 LCLLRLYRTSPD-LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRL-SRIVTSASTDLQDY 247 (621)
T ss_dssp HHHHHHHHHCGG-GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHH-HHHHHCCSSSCSTT
T ss_pred HHHHHHHHhChh-hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHHHhCCCCCccch
Confidence 888766543221 122 45667777776555 4566788889999888887765444444443 4455432111 00
Q ss_pred ---CCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcC-CCcCCcC-CChhhHhhHHHHHHH
Q 001196 229 ---DTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYG-EMSEDIE-SSSVDKAHLRLASAK 303 (1125)
Q Consensus 229 ---~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~G-EL~~~~~-tp~~~kArLRLaAa~ 303 (1125)
.-...| +.+..|++|...+.. .+ ....+.++++|..+++.. +..+... .+.....-+-+.|+.
T Consensus 248 ~~~~~~~~w--------~qi~il~ll~~~~~~-~d---~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~ 315 (621)
T 2vgl_A 248 TYYFVPAPW--------LSVKLLRLLQCYPPP-ED---PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAIS 315 (621)
T ss_dssp EETTEESHH--------HHHHHHHHGGGSSSC-SS---HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCch--------HHHHHHHHHHHhCCC-CC---HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHH
Confidence 001234 235667777665432 11 112334556666555221 1000000 001223367788888
Q ss_pred HHHhhhcccCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcC
Q 001196 304 AVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDR 350 (1125)
Q Consensus 304 sLLKLAr~~d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L~~~ 350 (1125)
+++.|.. ...+-..-+..|..++..+.+++|-.-+.-|.+.+...
T Consensus 316 ~i~~l~~--~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~ 360 (621)
T 2vgl_A 316 LIIHHDS--EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSE 360 (621)
T ss_dssp HHHHHCC--CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT
T ss_pred HHHhcCC--cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcc
Confidence 8888752 11111112334445556777888888888887777654
No 41
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.34 E-value=0.12 Score=53.35 Aligned_cols=178 Identities=19% Similarity=0.142 Sum_probs=111.9
Q ss_pred HHHHHHhccCCc--HHHHHHHH---HHHh---cccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCcc
Q 001196 20 DDLLKILGAKHR--LYDFLSTL---SMKC---SYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLG 91 (1125)
Q Consensus 20 ~ELLKRLg~k~~--l~etlk~L---L~Rs---S~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk 91 (1125)
..|.+.|.+.++ ....+..| +.+. ...++....|+.|+..+.. .+......|...|..|+...|..-.
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 577888887665 33333333 2221 1134455567777774432 2245667788889999876654322
Q ss_pred -----ccHHHHHHHHhhccchhHHHHHHHHHHhccchhhh-hcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCc
Q 001196 92 -----GTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDG 165 (1125)
Q Consensus 92 -----~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~-~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~ 165 (1125)
+.+..|+.+|.+.++.+...++.+|.+++..-... ........++.|.++...+++.....|+.+|..++....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 24688899999888888999999999886432222 122345688889999988999999999999998876432
Q ss_pred cch----HHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhcc
Q 001196 166 LKS----LSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAM 201 (1125)
Q Consensus 166 ~~~----ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP 201 (1125)
... -..++..|+..|...+ -....+.+|+.|+...|
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 212 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 212 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH
Confidence 110 1223566676666554 22345566666664444
No 42
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=95.22 E-value=0.036 Score=49.89 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=41.0
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEec-CCCceeeecC
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYD-DEDVEVLRLD 871 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~Yd-DGD~E~L~L~ 871 (1125)
-+|..|-..|..|+.||.|+|++.+...+...|.|- =|..|.+.+.
T Consensus 19 kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~ 65 (77)
T 3pnw_C 19 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 65 (77)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGG
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHH
Confidence 389999999999999999999999988888999995 4999988765
No 43
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.06 E-value=0.79 Score=56.82 Aligned_cols=291 Identities=11% Similarity=-0.024 Sum_probs=148.7
Q ss_pred HHHHHHHhccCCc-HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcC-----ccc
Q 001196 19 QDDLLKILGAKHR-LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL-----LGG 92 (1125)
Q Consensus 19 r~ELLKRLg~k~~-l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L-----Fk~ 92 (1125)
...|+.+|+.... ....+-.++....-..+..-.|+.|+..+.. .+......|...|..|+...+.. ..+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~----~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCC----CCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 3577788876543 1111122222111112336678888885542 23345677888888888754321 124
Q ss_pred cHHHHHHHHhhc-cchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc--ch-
Q 001196 93 TEEELVNLLKEE-NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL--KS- 168 (1125)
Q Consensus 93 ~v~~L~~lL~d~-n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~--~~- 168 (1125)
.+..|+.+|... +..+...++.+|.++...-.....-.....++.|..+...+++..-.+|+.+|..++..... ..
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 578888888864 66677788888887653311111112346788899999999988889999999887755321 01
Q ss_pred -HHHHHHHHHHhhhcCC-C-CchHHHHHHHHHhhccccccc-hhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHH
Q 001196 169 -LSVLYKRLVDMLEEKT-H-LPAVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLK 244 (1125)
Q Consensus 169 -ls~L~e~Lv~~Le~~s-~-l~T~L~aLgqIA~~aP~vfe~-~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aK 244 (1125)
-..++..|+..|...+ . ....+.+|..++...+..-.. .....+..+++ +|.... .+ ..+
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~-lL~~~~-------------~~--~~~ 336 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN-IMRTYT-------------YE--KLL 336 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHH-HHTTCC-------------CH--HHH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHH-HHhcCC-------------HH--HHH
Confidence 1234667777676543 2 222344555554422211110 01122333333 332210 11 122
Q ss_pred HHHHHHHHHhhcCCcccccccc--hHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCC-CCHHHH
Q 001196 245 IYGIKTLVKSYLPVKDAHIRPG--IDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHK-IPVDVF 321 (1125)
Q Consensus 245 I~ALK~LvN~Lla~~~~~~~~~--~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~-Itp~~F 321 (1125)
..++.+|.+.+..... +.. ...++..|..++..+ -..++..|+..|..||...... .-...+
T Consensus 337 ~~a~~aL~~Ls~~~~~---~~~i~~~g~l~~Ll~lL~~~------------~~~~~~~a~~~L~~L~~~~~~~~~~~~~i 401 (780)
T 2z6g_A 337 WTTSRVLKVLSVCSSN---KPAIVEAGGMQALGLHLTDP------------SQRLVQNCLWTLRNLSDAATKQEGMEGLL 401 (780)
T ss_dssp HHHHHHHHHHHTSTTH---HHHHHHTTHHHHHGGGTTCS------------CHHHHHHHHHHHHHHHTTCTTCSCCHHHH
T ss_pred HHHHHHHHHhhcChHH---HHHHHHhchHHHHHHHHcCC------------chHHHHHHHHHHHHHhccchhhhhhhhHH
Confidence 3456666665532111 111 112344444444221 1346777888999999764222 224455
Q ss_pred HHHhhcccCCchhHHHHHHHHHH
Q 001196 322 HLTLRTPEISFPQAKKLFLSKVH 344 (1125)
Q Consensus 322 ~~La~lvQD~~~eVR~~Fl~KL~ 344 (1125)
..|..++.++.+.||..-+.-|.
T Consensus 402 ~~Lv~lL~~~d~~vr~~A~~aL~ 424 (780)
T 2z6g_A 402 GTLVQLLGSDDINVVTCAAGILS 424 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Confidence 55666778888888876544443
No 44
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.95 E-value=0.67 Score=47.24 Aligned_cols=146 Identities=18% Similarity=0.135 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCcc-----ccHHHHHHHHhhccchhHHHHHHHHHHhccchhh
Q 001196 51 EHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLG-----GTEEELVNLLKEENEIIKEGILHVLAKAGGTIRE 125 (1125)
Q Consensus 51 ShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk-----~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e 125 (1125)
..|+.|+..+.. .+......|...|..|+...|..-. +.+..|+.+|.+.++.+...++.+|.++...-++
T Consensus 44 g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 119 (252)
T 4hxt_A 44 GGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 119 (252)
T ss_dssp THHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 457777774432 2345667788888888876555332 3368889999988888899999999988632221
Q ss_pred h-hcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccc----hHHHHHHHHHHhhhcCC--CCchHHHHHHHHHh
Q 001196 126 Q-LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK----SLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQ 198 (1125)
Q Consensus 126 ~-~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~----~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~ 198 (1125)
. ........++.|.++...+++.....|+.+|..++...... .-..++..|+..|...+ -....+.+|+.|+.
T Consensus 120 ~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 120 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 1 11123467888999999999999999999999887653321 11224666666666443 22334555555554
Q ss_pred hc
Q 001196 199 TA 200 (1125)
Q Consensus 199 ~a 200 (1125)
..
T Consensus 200 ~~ 201 (252)
T 4hxt_A 200 GP 201 (252)
T ss_dssp SB
T ss_pred CC
Confidence 33
No 45
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.59 E-value=0.5 Score=58.57 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhh-ccc
Q 001196 52 HVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQL-AAT 130 (1125)
Q Consensus 52 hV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~-~~~ 130 (1125)
.|+.|+..+... +......+.++|..+... .+-.+.+..|+.+|.+.+..+.+.++.+|..++....... ...
T Consensus 116 ~i~~lv~~L~~~----~~~~r~~a~~~l~~~~~~--~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~ 189 (780)
T 2z6g_A 116 AHPTNVQRLAEP----SQMLKHAVVNLINYQDDA--ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR 189 (780)
T ss_dssp ----------CC----SCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTT
T ss_pred cHHHHHHHhcCc----cHHHHHHHHHHHHhhhHH--HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHh
Confidence 467777765432 122334566666655432 3445668999999998888888999999998865432111 112
Q ss_pred ChhHHHHHHHHhhcC-ChHHHHHHHHHHHhhcCCCcc---chHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhcc
Q 001196 131 SSSVDLLLERLCLEG-SRRQAKYAVHALAAITKDDGL---KSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAM 201 (1125)
Q Consensus 131 ~s~l~~~L~~lAleG-TPrqAKyAVr~LaAls~d~~~---~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP 201 (1125)
....++.|.++...+ ++.....|+.+|..++..... ..-...+..|+..|...+ -....+.+|+.|+...+
T Consensus 190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh
Confidence 335666666655555 788888999999877665321 011134666777676554 23345666666666544
No 46
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.41 E-value=1.2 Score=55.70 Aligned_cols=172 Identities=17% Similarity=0.129 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHHHhhCCc---Cc--cccHHHHHHHHhhccchhHHHHHHHHHHhccchhhh------------------
Q 001196 70 QFMQSCMDILGILARFSPL---LL--GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ------------------ 126 (1125)
Q Consensus 70 ~~~~~AleLL~~IS~~~P~---LF--k~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~------------------ 126 (1125)
.....|.+.|.++|...+. += .+.+..|+.+|...+..+...++.+|.++.....++
T Consensus 394 ~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~ 473 (810)
T 3now_A 394 DIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIP 473 (810)
T ss_dssp SHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCC
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCc
Confidence 4566788888888765432 22 234688999999888889999999999886422100
Q ss_pred ---------------hcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccc---hHHHHHHHHHHhhhcCC--CC
Q 001196 127 ---------------LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK---SLSVLYKRLVDMLEEKT--HL 186 (1125)
Q Consensus 127 ---------------~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~---~ls~L~e~Lv~~Le~~s--~l 186 (1125)
..-.....++.|..++..|+|..-+.|+.+|..++.+.+.. .-...+..|+..|..+. ..
T Consensus 474 ~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k 553 (810)
T 3now_A 474 EEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGK 553 (810)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred cccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHH
Confidence 00123356788999999999999999999999888764310 01122445555565554 23
Q ss_pred chHHHHHHHHHhhc-ccc-ccc-hhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcC
Q 001196 187 PAVLQSLGCIAQTA-MPV-FET-RESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLP 257 (1125)
Q Consensus 187 ~T~L~aLgqIA~~a-P~v-fe~-~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla 257 (1125)
.....+|+.|+... |.. |.. ....++..++. +|..+. ....+..|+.+|+|-+..
T Consensus 554 ~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~-LL~~~~---------------~~l~~~eAl~AL~NLa~~ 611 (810)
T 3now_A 554 RHATQALARIGITINPEVSFSGQRSLDVIRPLLN-LLQQDC---------------TALENFESLMALTNLASM 611 (810)
T ss_dssp HHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHH-TTSTTS---------------CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHH-HhCCCC---------------cHHHHHHHHHHHHHHhcC
Confidence 44567777776643 433 432 22335566554 443210 122345678888887754
No 47
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.26 E-value=0.32 Score=52.13 Aligned_cols=168 Identities=9% Similarity=-0.003 Sum_probs=96.8
Q ss_pred HHHHHHHH-HHhhCCcCc--ccc----HHHHHHHH-hhccchhHHHHHHHHHHhccchh-hhhc-ccChhHHHHHHHHhh
Q 001196 74 SCMDILGI-LARFSPLLL--GGT----EEELVNLL-KEENEIIKEGILHVLAKAGGTIR-EQLA-ATSSSVDLLLERLCL 143 (1125)
Q Consensus 74 ~AleLL~~-IS~~~P~LF--k~~----v~~L~~lL-~d~n~~vve~aLkaLAk~gk~i~-e~~~-~~~s~l~~~L~~lAl 143 (1125)
.|++-|.. +..-+|.+- .++ ++.|.+.| .+.|..++..+|++|..++..++ ..+. +....+++.|-....
T Consensus 35 ~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~ 114 (249)
T 2qk1_A 35 EALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTK 114 (249)
T ss_dssp HHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHc
Confidence 34444444 555577766 333 46667777 57788888999999998876655 4444 444445555555444
Q ss_pred cCChHH---HHHHHHHHHhhcCCCccc--hHHHHHHHHHHhhhcCCCCch---HHHHHHHHHhhcc---ccccchh-HHH
Q 001196 144 EGSRRQ---AKYAVHALAAITKDDGLK--SLSVLYKRLVDMLEEKTHLPA---VLQSLGCIAQTAM---PVFETRE-SEI 211 (1125)
Q Consensus 144 eGTPrq---AKyAVr~LaAls~d~~~~--~ls~L~e~Lv~~Le~~s~l~T---~L~aLgqIA~~aP---~vfe~~~-~eI 211 (1125)
+..+.. |-+|...|+..+. +... ++..+++.|+..|.... ... .|..|+.++..++ ..|..+- ..|
T Consensus 115 dkk~~V~~aa~~al~~i~~~~~-~~~~~~~l~~ll~~l~~~l~~k~-~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~i 192 (249)
T 2qk1_A 115 EKKPSVIEAIRKALLTICKYYD-PLASSGRNEDMLKDILEHMKHKT-PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEV 192 (249)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSC-TTCTTCTTHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTH
T ss_pred CCCHHHHHHHHHHHHHHHHHcc-ccccCCcHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 444433 4444444443221 1112 27789999998887653 333 4555555555555 3455555 677
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcc
Q 001196 212 EEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKD 260 (1125)
Q Consensus 212 ~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~ 260 (1125)
+..+++-+ |.. .-..+-.|+.+|+..+..+.+
T Consensus 193 ip~l~~~l--------------~D~---~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 193 VPIVIQIV--------------NDT---QPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHH--------------TCS---SHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHh--------------cCC---CHHHHHHHHHHHHHHHHHhCH
Confidence 77665433 111 122356688888877755554
No 48
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.03 E-value=0.37 Score=49.71 Aligned_cols=189 Identities=18% Similarity=0.127 Sum_probs=110.1
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHhccchhhh-hcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccc---
Q 001196 92 GTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK--- 167 (1125)
Q Consensus 92 ~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~-~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~--- 167 (1125)
+.+..|+.+|...++.+...++.+|..++..-++. ..-.....++.|.++...+++.....|+.+|..++......
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH
Confidence 34688999999888888889999999876422211 11123457888888888899988999999999887765421
Q ss_pred -hHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccch-hHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHH
Q 001196 168 -SLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLL 243 (1125)
Q Consensus 168 -~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~-~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~a 243 (1125)
.-..++..|+..|...+ -....+.+|+.|+...+.....- ...++..++. +|... ....
T Consensus 134 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~----------------~~~v 196 (252)
T 4db8_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LLSSP----------------NEQI 196 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH-GGGCS----------------SHHH
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH-HHCCC----------------CHHH
Confidence 11225667777776554 23345556666655433322110 1222333332 33211 1234
Q ss_pred HHHHHHHHHHhhcCCcccccccchH-HHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhc
Q 001196 244 KIYGIKTLVKSYLPVKDAHIRPGID-DLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSR 310 (1125)
Q Consensus 244 KI~ALK~LvN~Lla~~~~~~~~~~~-~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr 310 (1125)
+..|+.+|.|-+..... .....++ .++..|..++..+ -..+|-.|+.+|-.||+
T Consensus 197 ~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~ll~~~------------~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 197 LQEALWALSNIASGGNE-QKQAVKEAGALEKLEQLQSHE------------NEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHTTTTCS------------SSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhCCC------------CHHHHHHHHHHHHHHhc
Confidence 67889999998754322 1111111 2444555444222 12678888888888875
No 49
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.96 E-value=0.76 Score=47.94 Aligned_cols=143 Identities=14% Similarity=0.087 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhhCCcCcccc----HHHHHHHHh-hccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCC
Q 001196 72 MQSCMDILGILARFSPLLLGGT----EEELVNLLK-EENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS 146 (1125)
Q Consensus 72 ~~~AleLL~~IS~~~P~LFk~~----v~~L~~lL~-d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGT 146 (1125)
...|...|..+...+|.+...+ +..|...|. +.|..+...++.+|..++..+...+.+....+++.|-.......
T Consensus 32 R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~ 111 (242)
T 2qk2_A 32 RKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK 111 (242)
T ss_dssp HHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC
Confidence 3456666666666666544333 466677774 77888888999999988766654444445567777777666666
Q ss_pred hHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCCCCch---HHHHHHHHHhhc-ccc-ccchhHHHHHHHHHh
Q 001196 147 RRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPA---VLQSLGCIAQTA-MPV-FETRESEIEEFIKSK 218 (1125)
Q Consensus 147 PrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s~l~T---~L~aLgqIA~~a-P~v-fe~~~~eI~~fIiK~ 218 (1125)
+..-..|..+|.++...- .+..++..|...|...+ ... .+..|+.++..+ |.. +..+-..|+.++++-
T Consensus 112 ~~vr~~a~~aL~~~~~~~---~~~~ll~~l~~~l~~~~-~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~ 184 (242)
T 2qk2_A 112 PNVVTALREAIDAIYAST---SLEAQQESIVESLSNKN-PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184 (242)
T ss_dssp HHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH
Confidence 665567777777666543 35678888888887553 333 455555544333 653 445566777777653
No 50
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=93.89 E-value=0.14 Score=43.66 Aligned_cols=45 Identities=20% Similarity=0.384 Sum_probs=40.2
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecC
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLD 871 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~ 871 (1125)
-+|..|=+-|-+ ..||.|+|+..|....+..|+++||.+-|+.+.
T Consensus 5 ~~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~k 49 (58)
T 4hcz_A 5 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 49 (58)
T ss_dssp CTTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEEEEEGG
T ss_pred ccCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhH
Confidence 368889999985 789999999999999999999999999988664
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.68 E-value=0.81 Score=53.53 Aligned_cols=260 Identities=11% Similarity=0.089 Sum_probs=135.8
Q ss_pred HHHHHHHhccCCc--HHH---HHHHHHHHhc-c---cccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcC
Q 001196 19 QDDLLKILGAKHR--LYD---FLSTLSMKCS-Y---LLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL 89 (1125)
Q Consensus 19 r~ELLKRLg~k~~--l~e---tlk~LL~RsS-~---lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L 89 (1125)
-.++++.|.+..+ .+. .++-||.+-- | .+++.--||.|++.+... .+...-..|...|..|+..+|..
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~---~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT---TCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHH
Confidence 3788888887665 222 2333333221 1 244445688888855432 22334456788899998877753
Q ss_pred c-----cccHHHHHHHHhhccchhHHHHHHHHHHhccchhhh-hcccChhHHHHHHHHhhcCCh-----HHHHHHHHHHH
Q 001196 90 L-----GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-LAATSSSVDLLLERLCLEGSR-----RQAKYAVHALA 158 (1125)
Q Consensus 90 F-----k~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~-~~~~~s~l~~~L~~lAleGTP-----rqAKyAVr~La 158 (1125)
= .+.+..|+.+|...+..+.+.++.+|.+++..-++. ........++.|..+....+. .....|+.+|.
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 2 235789999999988889999999999876432211 111233345556665544332 23356677776
Q ss_pred hhcCCCcc----chHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccc-hhHHHHHHHHHhhhcccCCCCCCCC
Q 001196 159 AITKDDGL----KSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKIRNDTK 231 (1125)
Q Consensus 159 Als~d~~~----~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~-~~~eI~~fIiK~LLl~~~~~~~~~~ 231 (1125)
.++..... .....++..|+..|.... -....+.+|+.|+...+..... ....++..++. +|...
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~-lL~~~-------- 286 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK-LLGAT-------- 286 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHH-HHTCS--------
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhh-hhcCC--------
Confidence 55554321 223445666666665544 2333455555555433221111 01122333332 33211
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchH-HHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhc
Q 001196 232 ACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGID-DLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSR 310 (1125)
Q Consensus 232 ~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~-~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr 310 (1125)
....+..|+++|.|.+.+... .....++ .++..|..++ . .....+|..|+.+|-.|+.
T Consensus 287 --------~~~v~~~al~aL~nl~~~~~~-~~~~i~~~g~l~~L~~LL------~------~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 287 --------ELPIVTPALRAIGNIVTGTDE-QTQKVIDAGALAVFPSLL------T------NPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp --------CHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTGGGGCC-CT------T------CSSHHHHHHHHHHHHHHTT
T ss_pred --------ChhhhhHHHHHHHHhhcCCHH-HHHHHhhccchHHHHHHh------c------CCCHHHHHHHHHHHHHHHc
Confidence 123457788888887644321 1000000 0111111111 1 1234688999999999986
Q ss_pred c
Q 001196 311 Q 311 (1125)
Q Consensus 311 ~ 311 (1125)
.
T Consensus 346 ~ 346 (510)
T 3ul1_B 346 G 346 (510)
T ss_dssp S
T ss_pred C
Confidence 4
No 52
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.54 E-value=0.37 Score=48.40 Aligned_cols=196 Identities=15% Similarity=0.078 Sum_probs=108.4
Q ss_pred CCcCcccc-HHHHHHHHhhccchhHHHHHHHHHHhccchhhh-hcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCC
Q 001196 86 SPLLLGGT-EEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKD 163 (1125)
Q Consensus 86 ~P~LFk~~-v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~-~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d 163 (1125)
+|..+..- ...|+.+|..+++.+...++.+|+.++..-++. ........++.|.++-..+++..-..|+.+|..++..
T Consensus 5 ~~~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 5 HHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (210)
T ss_dssp --------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred cccccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 34444333 477889999988888889999999876322211 1123446788888888888998889999999987743
Q ss_pred Cccch----HHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccccccch-hHHHHHHHHHhhhcccCCCCCCCCCCCCC
Q 001196 164 DGLKS----LSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACWDD 236 (1125)
Q Consensus 164 ~~~~~----ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~vfe~~-~~eI~~fIiK~LLl~~~~~~~~~~~eW~~ 236 (1125)
..... -...+..|+..|...+ -....+.+|+.|+...+.....- ...++..+++ +|..+
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~------------- 150 (210)
T 4db6_A 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LLSSP------------- 150 (210)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTTCS-------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHH-HHcCC-------------
Confidence 32110 0123566677676554 22344566666665444322111 1223333332 22210
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhc
Q 001196 237 RSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSR 310 (1125)
Q Consensus 237 ~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr 310 (1125)
....+..|+.+|.|.+.........-.-...+..|..++..+ -..+|-.|..+|-.||.
T Consensus 151 ---~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~------------~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 151 ---NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE------------NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp ---CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS------------CHHHHHHHHHHHHHHCC
T ss_pred ---CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC------------CHHHHHHHHHHHHHHhc
Confidence 124567888888888865332110001112455565555221 23577888888888775
No 53
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.51 E-value=0.87 Score=54.60 Aligned_cols=114 Identities=16% Similarity=0.085 Sum_probs=70.5
Q ss_pred cCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcc-cChhHHHHHHHHhhcC-ChHHHHHHHHHHHhhcCCCc
Q 001196 88 LLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA-TSSSVDLLLERLCLEG-SRRQAKYAVHALAAITKDDG 165 (1125)
Q Consensus 88 ~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~-~~s~l~~~L~~lAleG-TPrqAKyAVr~LaAls~d~~ 165 (1125)
.+-.+.+..|+.+|.++++.+...++.+|.+++......... .....++.|.++-..+ ++...+.|+.+|..++...+
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 345566899999999888888899999999876543211111 1234556666655555 67777899999987776533
Q ss_pred cc---hHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhcc
Q 001196 166 LK---SLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAM 201 (1125)
Q Consensus 166 ~~---~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP 201 (1125)
.. .-...+..|+..|.... -....+.+|+.|+...+
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~ 130 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 130 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST
T ss_pred hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Confidence 10 00124566666666554 23445667777776544
No 54
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.33 E-value=3.3 Score=49.63 Aligned_cols=262 Identities=11% Similarity=0.011 Sum_probs=148.4
Q ss_pred cCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcC---c--cccHHHHHHHHhhc-cchhHHHHHHHHHHhcc
Q 001196 48 FNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL---L--GGTEEELVNLLKEE-NEIIKEGILHVLAKAGG 121 (1125)
Q Consensus 48 fNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L---F--k~~v~~L~~lL~d~-n~~vve~aLkaLAk~gk 121 (1125)
+..-.|+.|+..+.. .+......|...|..++...+.. + .+.+..|+.+|... +..+...++.+|..+..
T Consensus 11 ~~~g~i~~Lv~lL~~----~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~ 86 (644)
T 2z6h_A 11 LATRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 86 (644)
T ss_dssp -CTTTHHHHHHHHTC----SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred hhhchHHHHHHHHcC----CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 455567888775542 23356677889999999877632 2 24578899999864 56677778888887654
Q ss_pred chhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccc----hHHHHHHHHHHhhhcCC-C-CchHHHHHHH
Q 001196 122 TIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK----SLSVLYKRLVDMLEEKT-H-LPAVLQSLGC 195 (1125)
Q Consensus 122 ~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~----~ls~L~e~Lv~~Le~~s-~-l~T~L~aLgq 195 (1125)
.-...........++.|.++...+++..-.+|+.+|..++...... .-..++..|+..|...+ . ....+.+|+.
T Consensus 87 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 87 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 3211111234468888999988888888889999998776543211 11345677777776554 2 2223345555
Q ss_pred HHhhccccccc-hhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccc-h-HHHHH
Q 001196 196 IAQTAMPVFET-RESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPG-I-DDLLG 272 (1125)
Q Consensus 196 IA~~aP~vfe~-~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~-~-~~llk 272 (1125)
|+...+..-.. .....+..+++ +|.... .+ .....++.+|.|-+..... +.. + ...+.
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~-lL~~~~-------------~~--~~~~~a~~~L~nLs~~~~~---~~~l~~~g~l~ 227 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVN-IMRTYT-------------YE--KLLWTTSRVLKVLSVCSSN---KPAIVEAGGMQ 227 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHH-HHTTCC-------------CH--HHHHHHHHHHHHHTTCTTH---HHHHHHTTHHH
T ss_pred HHhcCcHHHHHHHHcCChHHHHH-HHHcCC-------------hH--HHHHHHHHHHHHHhcCccc---HHHHHHCCCHH
Confidence 55422221100 11122333333 333211 11 2234577777776642221 111 1 11344
Q ss_pred HHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhccc-CCCCCHHHHHHHhhcccCCchhHHHHHHHHHH
Q 001196 273 ILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW-DHKIPVDVFHLTLRTPEISFPQAKKLFLSKVH 344 (1125)
Q Consensus 273 LL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~-d~~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~ 344 (1125)
.|..++..+ ...+|..|+..|-.||+.. ....-...+..|+.++.++..+||..-..-|.
T Consensus 228 ~L~~ll~~~------------~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 228 ALGLHLTDP------------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288 (644)
T ss_dssp HHHTTTTCS------------CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHhcC------------CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444443221 2567888889999999864 22222344555667778888888877555554
No 55
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=93.32 E-value=1.2 Score=50.81 Aligned_cols=116 Identities=15% Similarity=0.071 Sum_probs=69.2
Q ss_pred CcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhh-cccChhHHHHHHHHhhcC-ChHHHHHHHHHHHhhcCCC
Q 001196 87 PLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQL-AATSSSVDLLLERLCLEG-SRRQAKYAVHALAAITKDD 164 (1125)
Q Consensus 87 P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~-~~~~s~l~~~L~~lAleG-TPrqAKyAVr~LaAls~d~ 164 (1125)
|.+-.+.+..|+.+|.++++.+.+.++.+|.+++..-.... .......++.|.++-..+ ++..-..|+.+|..++...
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 44556678999999998888888899999988764322111 111234556666655555 6777789999998777653
Q ss_pred ccc---hHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccc
Q 001196 165 GLK---SLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMP 202 (1125)
Q Consensus 165 ~~~---~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~ 202 (1125)
+.. .-...+..|+..|...+ -....+.+|+.|+...+.
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 134 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc
Confidence 310 01124556666666554 223456667777665443
No 56
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=93.28 E-value=0.13 Score=47.26 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=39.8
Q ss_pred cccCceEEEecCCCCceEEEEEEEecCCCCeeEEEe-cCCCceeeecCc
Q 001196 825 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLDK 872 (1125)
Q Consensus 825 ~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~Y-dDGD~E~L~L~~ 872 (1125)
--+|.-|-+.|+.|..||.|.|.+..+ ++.-.|.| |=|..|.+.+..
T Consensus 28 ~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~~ 75 (94)
T 3fdr_A 28 VHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKD 75 (94)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGGG
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHHH
Confidence 349999999999999999999999975 45777888 889999887653
No 57
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.56 E-value=0.2 Score=46.04 Aligned_cols=50 Identities=22% Similarity=0.120 Sum_probs=44.7
Q ss_pred cCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecCcceEEEe
Q 001196 827 IGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELL 878 (1125)
Q Consensus 827 VG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~~Ek~~~~ 878 (1125)
+|.-|.+..++|+.||.|.|..-++.++-|.+.||=|.++.+...+ .+-+
T Consensus 24 ~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~~--LR~L 73 (85)
T 2eqk_A 24 NDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVDC--LRKL 73 (85)
T ss_dssp SSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETTT--EEEC
T ss_pred CCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEccc--cccC
Confidence 8999999999999999999999999999999999999999998663 4444
No 58
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=92.25 E-value=4.9 Score=45.85 Aligned_cols=261 Identities=11% Similarity=0.017 Sum_probs=142.3
Q ss_pred CHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCc---Cc--cccHHHHHHHHhhc-cchhHHHHHHHHHHhccc
Q 001196 49 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPL---LL--GGTEEELVNLLKEE-NEIIKEGILHVLAKAGGT 122 (1125)
Q Consensus 49 NkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~---LF--k~~v~~L~~lL~d~-n~~vve~aLkaLAk~gk~ 122 (1125)
....|+.|+..+.. .+......|...|..++...+. ++ .+.+..|+.+|... +..+...++.+|.+++..
T Consensus 15 ~~~~i~~Lv~lL~~----~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 15 ATRAIPELTKLLND----EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp --CHHHHHHHHHTC----SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hHhhHHHHHHHhCC----CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 44457777774442 2334566788888888865543 22 25678899999764 666778888888887643
Q ss_pred hhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc--ch--HHHHHHHHHHhhhcCC-C-CchHHHHHHHH
Q 001196 123 IREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL--KS--LSVLYKRLVDMLEEKT-H-LPAVLQSLGCI 196 (1125)
Q Consensus 123 i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~--~~--ls~L~e~Lv~~Le~~s-~-l~T~L~aLgqI 196 (1125)
-.....-.....++.|.++...+++..-.+|+.+|..++.+... .. -...+..|+..|...+ . ....+.+|+.|
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11111112346788899988888888889999999877654321 11 1345667777776543 2 22233455555
Q ss_pred Hhhccccccc-hhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccc-h-HHHHHH
Q 001196 197 AQTAMPVFET-RESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPG-I-DDLLGI 273 (1125)
Q Consensus 197 A~~aP~vfe~-~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~-~-~~llkL 273 (1125)
+...+..-.. .....+..++. +|.... ++ .....++.+|.|.+..... +.. + ...+..
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~-ll~~~~-------------~~--~~~~~a~~~L~~l~~~~~~---~~~~~~~g~~~~ 231 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVN-IMRTYT-------------YE--KLLWTTSRVLKVLSVCSSN---KPAIVEAGGMQA 231 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHH-HHHHCC-------------CH--HHHHHHHHHHHHHTTSTTH---HHHHHHTTHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHH-HHHhCC-------------hH--HHHHHHHHHHHHHhcCccc---HHHHHHCCCHHH
Confidence 5432221110 01122333333 333211 11 1234466666666532111 111 1 123444
Q ss_pred HHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCC-CHHHHHHHhhcccCCchhHHHHHHHHHH
Q 001196 274 LKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKI-PVDVFHLTLRTPEISFPQAKKLFLSKVH 344 (1125)
Q Consensus 274 L~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~I-tp~~F~~La~lvQD~~~eVR~~Fl~KL~ 344 (1125)
|..++..+ ...+|-.|+..|-.||+...... -...+..+..++.++.++||..-+.-|.
T Consensus 232 L~~ll~~~------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 232 LGLHLTDP------------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp HHTTTTSS------------CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHhCC------------ChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44443221 14577788888999998642222 2334455556667888888776444433
No 59
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=92.10 E-value=0.15 Score=48.36 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=40.1
Q ss_pred cccCceEEEecCCCCceEEEEEEEecCCCCeeEEEe-cCCCceeeecCc
Q 001196 825 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLDK 872 (1125)
Q Consensus 825 ~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~Y-dDGD~E~L~L~~ 872 (1125)
--+|.-|-+.|+.|..||.|.|+..++. +.-.|.| |=|..|.+.+..
T Consensus 33 ~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~~ 80 (110)
T 2diq_A 33 VHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKD 80 (110)
T ss_dssp CCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGGG
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehHH
Confidence 3589999999999999999999999874 5677888 889999987753
No 60
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=91.80 E-value=2.1 Score=53.62 Aligned_cols=266 Identities=16% Similarity=0.091 Sum_probs=147.5
Q ss_pred ccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcC------------------------------------c
Q 001196 47 LFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL------------------------------------L 90 (1125)
Q Consensus 47 ifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L------------------------------------F 90 (1125)
..+...|+.|+..+.. .+......|...|..|+..++.- +
T Consensus 417 v~d~g~Ip~LV~LL~s----~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vv 492 (810)
T 3now_A 417 IEDKASIHALMDLARG----GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA 492 (810)
T ss_dssp HHCHHHHHHHHHHHHT----TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHhCC----CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHH
Confidence 3455667777774432 23456778999999999866311 0
Q ss_pred -cccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc-ch
Q 001196 91 -GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL-KS 168 (1125)
Q Consensus 91 -k~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~-~~ 168 (1125)
.+.+..|+.+|...++.+.+.+..+|++++..-.....-.....++.|..+...|++..=+.|+.+|+.++..... ..
T Consensus 493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 493 NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 1335788888888888888999999998864311111123456788888888899998778999999866533221 11
Q ss_pred -----HHHHHHHHHHhhhcCCCCc---hHHHHHHHHHhhccccccch-hHHHHHHHHHhhhcccCCCCCCCCCCCCCCcH
Q 001196 169 -----LSVLYKRLVDMLEEKTHLP---AVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRNDTKACWDDRSE 239 (1125)
Q Consensus 169 -----ls~L~e~Lv~~Le~~s~l~---T~L~aLgqIA~~aP~vfe~~-~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se 239 (1125)
....+..|+.-|..+.... ..|.+|+-|+...+..-..- ....+..++ .+|....
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv-~LL~s~~--------------- 636 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIE-YYLMEDH--------------- 636 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH-HHHHSCC---------------
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH-HHHcCCC---------------
Confidence 1235677777676443322 24666666665533211110 111122222 2232211
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccccch--HHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCC
Q 001196 240 LCLLKIYGIKTLVKSYLPVKDAHIRPGI--DDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIP 317 (1125)
Q Consensus 240 ~~~aKI~ALK~LvN~Lla~~~~~~~~~~--~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~It 317 (1125)
...+..|+.++.|-+.+... + ...+ ...+.+|..++... ....|-+|+.+|--|+...
T Consensus 637 -~~Vq~~A~~~L~NLa~~~~~-~-~~~v~~~g~l~~Lv~LL~s~------------d~~vq~~Aa~ALanLt~~s----- 696 (810)
T 3now_A 637 -LYLTRAAAQCLCNLVMSEDV-I-KMFEGNNDRVKFLALLCEDE------------DEETATACAGALAIITSVS----- 696 (810)
T ss_dssp -TTHHHHHHHHHHHHTTSHHH-H-HHHHSSSSHHHHHHHGGGCS------------SHHHHHHHHHHHHHHHHHC-----
T ss_pred -HHHHHHHHHHHHHHhCChHH-H-HHHHhccCcHHHHHHHhcCC------------CHHHHHHHHHHHHHHhCCC-----
Confidence 12356788888887754221 1 1111 12556666655211 1357777777777776521
Q ss_pred HHHHHHHhhcccCCchhHH-HHHHHHHHHhHhcCCCchhHHHHHHh
Q 001196 318 VDVFHLTLRTPEISFPQAK-KLFLSKVHQYVKDRLLDAKYACAFLF 362 (1125)
Q Consensus 318 p~~F~~La~lvQD~~~eVR-~~Fl~KL~k~L~~~~Lp~RF~alffL 362 (1125)
+.....+ ++ ..++..|..+|..+-..++..++.++
T Consensus 697 ~~~~~~i----------i~~~g~I~~Lv~LL~s~d~~vq~~A~~aL 732 (810)
T 3now_A 697 VKCCEKI----------LAIASWLDILHTLIANPSPAVQHRGIVII 732 (810)
T ss_dssp HHHHHHH----------HTSTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHH----------HHHcCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 1111111 11 23555566666666556666666555
No 61
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=91.49 E-value=0.65 Score=40.87 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=37.7
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecC
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLD 871 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~ 871 (1125)
..--+|..|=+-|-+ ..||-|+|+. ..+.+..|+++|.-+-|+.+.
T Consensus 14 ~~~~~geDVL~rw~D-G~fYLGtIVd--~~~~~ClV~FeD~S~~Wv~~k 59 (69)
T 2xk0_A 14 VTYALQEDVFIKCND-GRFYLGTIID--QTSDQYLIRFDDQSEQWCEPD 59 (69)
T ss_dssp CCCCTTCEEEEECTT-SCEEEEEEEE--ECSSCEEEEETTCCEEEECTT
T ss_pred cccccCCeEEEEecC-CCEEEEEEEe--cCCceEEEEecCCcceeeeHH
Confidence 444589999999985 7899999965 557889999999988887654
No 62
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=91.28 E-value=0.5 Score=42.33 Aligned_cols=48 Identities=21% Similarity=0.370 Sum_probs=42.0
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecC
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLD 871 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~ 871 (1125)
..--+|..|=+-|- |..||.|+|+..+....+..|+++||.+-|....
T Consensus 25 ~~f~eGeDVLarws-DGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~k 72 (79)
T 2m0o_A 25 PRLWEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 72 (79)
T ss_dssp CCCCTTCEEEBCCT-TSCCCEEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ceeccCCEEEEEec-CCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEee
Confidence 34458999999998 7789999999999999999999999999988653
No 63
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=91.22 E-value=0.71 Score=54.04 Aligned_cols=263 Identities=13% Similarity=0.082 Sum_probs=137.1
Q ss_pred HHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcC-----ccccHHHHHHHHhhccch-----hHHHHHHHHHHhcc
Q 001196 52 HVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL-----LGGTEEELVNLLKEENEI-----IKEGILHVLAKAGG 121 (1125)
Q Consensus 52 hV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L-----Fk~~v~~L~~lL~d~n~~-----vve~aLkaLAk~gk 121 (1125)
.|+.|+..+. +.+......|...|..|+...|.+ -.+.+..|+.+|...+.. +...++.+|+....
T Consensus 144 aIp~Lv~lL~----s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 144 AIPAFISLLA----SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HHHHHHHHTT----CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHc----CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 3555555332 233456778889999999877753 123468888888864431 23445555555432
Q ss_pred chhh-hhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccch----HHHHHHHHHHhhhcCC--CCchHHHHHH
Q 001196 122 TIRE-QLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKS----LSVLYKRLVDMLEEKT--HLPAVLQSLG 194 (1125)
Q Consensus 122 ~i~e-~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~----ls~L~e~Lv~~Le~~s--~l~T~L~aLg 194 (1125)
.-.. ........+++.|.++...+++..-..|+.+|..++....... -..++..|+..|...+ -....+.+|+
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~ 299 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 299 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence 1100 0111234578889999989999888899999987776543211 1123556666665544 2234456666
Q ss_pred HHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccch-HHHHHH
Q 001196 195 CIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGI-DDLLGI 273 (1125)
Q Consensus 195 qIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~-~~llkL 273 (1125)
.|+... +.....++..=....- ..+.. +.....+..|..+|.|-+.+..+ +....+ ..++..
T Consensus 300 nl~~~~--------~~~~~~i~~~g~l~~L-------~~LL~-~~~~~v~~~A~~aL~nl~a~~~~-~~~~v~~~g~i~~ 362 (510)
T 3ul1_B 300 NIVTGT--------DEQTQKVIDAGALAVF-------PSLLT-NPKTNIQKEATWTMSNITAGRQD-QIQQVVNHGLVPF 362 (510)
T ss_dssp HHTTSC--------HHHHHHHHHTTGGGGC-------C-CTT-CSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHH
T ss_pred HhhcCC--------HHHHHHHhhccchHHH-------HHHhc-CCCHHHHHHHHHHHHHHHcCcHH-HHHHHHhcCCHHH
Confidence 655322 2222333221110000 00111 11123456788888887654432 111111 125555
Q ss_pred HHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCC-----CCCHHHHHHHhhcccCCchhHHHHHHHHHHHhH
Q 001196 274 LKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDH-----KIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYV 347 (1125)
Q Consensus 274 L~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~-----~Itp~~F~~La~lvQD~~~eVR~~Fl~KL~k~L 347 (1125)
|..++..|+ ..+|..|+.+|-.|+..-+. .+....+..|+.++..+.+.|+...+.-|...|
T Consensus 363 Lv~lL~~~~------------~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 363 LVGVLSKAD------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHHSSC------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC------------HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 655554442 24678888888888864211 111111223334455556666666555554443
No 64
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.14 E-value=2.3 Score=44.26 Aligned_cols=174 Identities=14% Similarity=0.087 Sum_probs=105.1
Q ss_pred HHHHHHhccCCc-----HHHHHHHHHHHhccccc--CHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccc
Q 001196 20 DDLLKILGAKHR-----LYDFLSTLSMKCSYLLF--NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGG 92 (1125)
Q Consensus 20 ~ELLKRLg~k~~-----l~etlk~LL~RsS~lif--NkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~ 92 (1125)
..|...+.++.. .+..+..++.-+..++- -.+-++.|...+.+ +.+......|...|..|+......|..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~k---d~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK---DSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 346667766442 45556666665332211 12334444443322 244566778999999999888888888
Q ss_pred cHHHHH----HHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCc---
Q 001196 93 TEEELV----NLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDG--- 165 (1125)
Q Consensus 93 ~v~~L~----~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~--- 165 (1125)
++..++ +.|.+.+..+.+.+..+|..+...+. -..+.+.|.......+|..=..|+.+|..+....+
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 876655 44444566666777777776643321 23466777776666788666778888876544321
Q ss_pred --cchHHHHHHHHHHhhhcCC-CC-chHHHHHHHHHhhccc
Q 001196 166 --LKSLSVLYKRLVDMLEEKT-HL-PAVLQSLGCIAQTAMP 202 (1125)
Q Consensus 166 --~~~ls~L~e~Lv~~Le~~s-~l-~T~L~aLgqIA~~aP~ 202 (1125)
..++..++..|+..|.+.. .. .+...+|+.|+...+.
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 2356677777777776554 11 3457777777766553
No 65
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=90.67 E-value=5.4 Score=39.75 Aligned_cols=188 Identities=14% Similarity=0.070 Sum_probs=110.1
Q ss_pred hCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCC
Q 001196 85 FSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 164 (1125)
Q Consensus 85 ~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~ 164 (1125)
++|....+....|+++|.+.+..+...++.+|..++.. ..++.|.++...+++..-..|+.+|..+.. .
T Consensus 7 ~~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-~ 75 (201)
T 3ltj_A 7 HHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGD-E 75 (201)
T ss_dssp CCCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-G
T ss_pred cccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-H
Confidence 44555555679999999999998888999999987641 234556666667888888889999985543 2
Q ss_pred ccchHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHH
Q 001196 165 GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLK 244 (1125)
Q Consensus 165 ~~~~ls~L~e~Lv~~Le~~s~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aK 244 (1125)
+ .+..|+..|...+ ......++..|+.+.. ......+++ +|. + .+ -..+
T Consensus 76 ~------~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~-------~~~~~~L~~-~l~-d-------------~~--~~vr 124 (201)
T 3ltj_A 76 R------AVEPLIKALKDED-GWVRQSAAVALGQIGD-------ERAVEPLIK-ALK-D-------------ED--WFVR 124 (201)
T ss_dssp G------GHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-------GGGHHHHHH-HTT-C-------------SS--HHHH
T ss_pred H------HHHHHHHHHcCCC-HHHHHHHHHHHHHhCc-------HHHHHHHHH-HHc-C-------------CC--HHHH
Confidence 2 2445555565433 2223333444443322 123333333 231 1 11 1335
Q ss_pred HHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHH
Q 001196 245 IYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLT 324 (1125)
Q Consensus 245 I~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~L 324 (1125)
..|+.+|.+.-- .. .+..|..++.. .-..+|.+|..+|-++. .+.....|
T Consensus 125 ~~a~~aL~~~~~-------~~----~~~~L~~~l~d------------~~~~vr~~A~~aL~~~~-------~~~~~~~L 174 (201)
T 3ltj_A 125 IAAAFALGEIGD-------ER----AVEPLIKALKD------------EDGWVRQSAADALGEIG-------GERVRAAM 174 (201)
T ss_dssp HHHHHHHHHHTC-------GG----GHHHHHHHTTC------------SSHHHHHHHHHHHHHHC-------SHHHHHHH
T ss_pred HHHHHHHHHhCC-------HH----HHHHHHHHHcC------------CCHHHHHHHHHHHHHhC-------chhHHHHH
Confidence 667777766421 11 23334444321 12368999999988883 23445555
Q ss_pred hhcccCCchhHHHHHHHHHH
Q 001196 325 LRTPEISFPQAKKLFLSKVH 344 (1125)
Q Consensus 325 a~lvQD~~~eVR~~Fl~KL~ 344 (1125)
..+++|+.+.||..-+.-|.
T Consensus 175 ~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 175 EKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHH
Confidence 56778899999987655554
No 66
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=90.22 E-value=2.2 Score=42.59 Aligned_cols=111 Identities=22% Similarity=0.211 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCc-----cccHHHHHHHHhhccchhHHHHHHHHHHhccch
Q 001196 49 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLL-----GGTEEELVNLLKEENEIIKEGILHVLAKAGGTI 123 (1125)
Q Consensus 49 NkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LF-----k~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i 123 (1125)
+...|+.|+..+.. .+......|...|..|+...|..- .+.+..|+.+|.+.+..+...++.+|.++...-
T Consensus 52 ~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 127 (210)
T 4db6_A 52 DAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127 (210)
T ss_dssp HTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC
Confidence 33456777774432 234566778889999987665432 235689999999988888999999999886432
Q ss_pred hhhh-cccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCC
Q 001196 124 REQL-AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKD 163 (1125)
Q Consensus 124 ~e~~-~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d 163 (1125)
++.. ......+++.|.++...+++....+|+.+|..++..
T Consensus 128 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 2221 123456889999999999999999999999877765
No 67
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=90.21 E-value=16 Score=38.33 Aligned_cols=193 Identities=16% Similarity=0.107 Sum_probs=114.9
Q ss_pred cHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHH
Q 001196 93 TEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVL 172 (1125)
Q Consensus 93 ~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L 172 (1125)
.+..|+..|.+.+..+...++.+|..++. ...++.|..+....++..-..|+.+|..+..... .+..+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~--~~~~l 91 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK--CEDNV 91 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT--THHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc--cchHH
Confidence 57899999999888888888999988762 2356667777777778777889999986553322 23344
Q ss_pred HHHHHHh-hhcCC--CCchHHHHHHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHH
Q 001196 173 YKRLVDM-LEEKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIK 249 (1125)
Q Consensus 173 ~e~Lv~~-Le~~s--~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK 249 (1125)
+.-|.+. +...+ --.+.+.+||.+....|.. ...++..+++ +|. +. +. ..+..|+.
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~-~l~-d~-------------~~--~vR~~a~~ 150 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQI-TAF-DK-------------ST--NVRRATAF 150 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHH-HTT-CS-------------CH--HHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHH-Hhh-CC-------------CH--HHHHHHHH
Confidence 4444432 23333 2245677788877554421 2234444432 221 11 11 22456666
Q ss_pred HHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhcccCCCCCHHHHHHHhhccc
Q 001196 250 TLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPE 329 (1125)
Q Consensus 250 ~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~d~~Itp~~F~~La~lvQ 329 (1125)
+|.+.- + ...+..++.+|. .. -..+|..|+.+|-++.. -.+..+..+..+++
T Consensus 151 aL~~~~----~---~~~~~~L~~~l~----d~------------~~~vr~~a~~aL~~~~~-----~~~~~~~~L~~~l~ 202 (280)
T 1oyz_A 151 AISVIN----D---KATIPLLINLLK----DP------------NGDVRNWAAFAININKY-----DNSDIRDCFVEMLQ 202 (280)
T ss_dssp HHHTC----------CCHHHHHHHHT----CS------------SHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHTT
T ss_pred HHHhcC----C---HHHHHHHHHHHc----CC------------CHHHHHHHHHHHHhhcc-----CcHHHHHHHHHHhc
Confidence 665432 1 113333333331 11 13589999999987742 13455666667789
Q ss_pred CCchhHHHHHHHHHHHh
Q 001196 330 ISFPQAKKLFLSKVHQY 346 (1125)
Q Consensus 330 D~~~eVR~~Fl~KL~k~ 346 (1125)
|+.+.||..-+.-|...
T Consensus 203 d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp CSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999998877766543
No 68
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=88.69 E-value=0.63 Score=48.30 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=41.2
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEe-cCCCceeeecCcceEEEec
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLDKERWELLD 879 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~Y-dDGD~E~L~L~~Ek~~~~~ 879 (1125)
-+|.-|-+.|+.|..||.|.|+.... ..-.|.| |.|..+.+.+. .++.+.
T Consensus 53 ~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~--~l~~l~ 103 (218)
T 2wac_A 53 KRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTN--RLAALP 103 (218)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGG--GEEECC
T ss_pred CcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchH--HcccCC
Confidence 38999999999999999999999987 7788888 66999998764 344443
No 69
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.01 E-value=1.8 Score=37.95 Aligned_cols=48 Identities=21% Similarity=0.370 Sum_probs=41.8
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecC
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLD 871 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~ 871 (1125)
+.--+|..|=.-|- |..||.|+|+..|.......|.+.|+..-|+...
T Consensus 8 ~~f~eGqdVLarWs-DGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~k 55 (68)
T 2e5p_A 8 PRLWEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 55 (68)
T ss_dssp CCCCTTCEEEEECT-TSSEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred cccccCCEEEEEec-CCcEEEeEEEEEecCCcEEEEEEccCCeeeeeee
Confidence 44558999999998 5789999999999999999999999999888543
No 70
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.35 E-value=3.9 Score=41.13 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=79.5
Q ss_pred HHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHH
Q 001196 39 LSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAK 118 (1125)
Q Consensus 39 LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk 118 (1125)
|..++..+.-+.+.++.|+..+.. .+......|...|..+.. ...+..|+.+|.+.+..+...++.+|..
T Consensus 7 ~~~~~~~~~~~~~~~~~L~~~L~~----~~~~vR~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~aL~~ 76 (211)
T 3ltm_A 7 FEKAAAPLRADPEKVEMYIKNLQD----DSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQ 76 (211)
T ss_dssp ---------CCGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cchhhhHhhcCHhHHHHHHHHHcC----CCHHHHHHHHHHHHHhCC------ccHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 344556667788999999985542 223344556666665543 3557889999999888888899999998
Q ss_pred hccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCC--CCchHHHHHHHH
Q 001196 119 AGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCI 196 (1125)
Q Consensus 119 ~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqI 196 (1125)
++. ....+.|..+....+|..-..|+.+|..+.. .+ .+..|+..|...+ --...+.+|+.+
T Consensus 77 ~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-~~------~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 77 IGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-ER------AVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp HCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-GG------GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred hCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-HH------HHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 763 1245566666667788888889999985543 22 2445555564443 223345555554
No 71
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.82 E-value=1.1 Score=38.58 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=40.2
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecC
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLD 871 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~ 871 (1125)
-+|..|=.-|- |..||.|+|+..|....+..|.+.|+-.-|+...
T Consensus 9 ~eGqdVLarWs-DGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~k 53 (63)
T 2e5q_A 9 TEGQYVLCRWT-DGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWK 53 (63)
T ss_dssp CTTCEEEEECT-TSCEEEEEECCCCSTTSEEEEEETTSCEEEEEGG
T ss_pred ecCCEEEEEec-CCCEEEEEEEEEecCCCEEEEEEccCceeEEEee
Confidence 47889999998 6789999999999999999999999999888653
No 72
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=86.72 E-value=6.7 Score=41.78 Aligned_cols=140 Identities=9% Similarity=0.073 Sum_probs=84.5
Q ss_pred HHHHHHHHh-ccCCc-----HHHHHHHHHHHhcccccCHHH----HHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCC
Q 001196 18 LQDDLLKIL-GAKHR-----LYDFLSTLSMKCSYLLFNKEH----VKEILLEVAAQKSSANAQFMQSCMDILGILARFSP 87 (1125)
Q Consensus 18 ar~ELLKRL-g~k~~-----l~etlk~LL~RsS~lifNkSh----V~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P 87 (1125)
.-+.|.+.| ...|+ ....+..|......--|.+.+ ++.||+++. +........+...|..|....+
T Consensus 61 ~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~----dkk~~V~~aa~~al~~i~~~~~ 136 (249)
T 2qk1_A 61 LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTK----EKKPSVIEAIRKALLTICKYYD 136 (249)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGG----CCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHcc
Confidence 345666777 34554 355666666555412355333 444544322 2223445667777777777653
Q ss_pred -cC----ccccHHHHHHHHhhccchhHHHHHHHHHHhccchh---hhhcccC-hhHHHHHHHHhhcCChHHHHHHHHHHH
Q 001196 88 -LL----LGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIR---EQLAATS-SSVDLLLERLCLEGSRRQAKYAVHALA 158 (1125)
Q Consensus 88 -~L----Fk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~---e~~~~~~-s~l~~~L~~lAleGTPrqAKyAVr~La 158 (1125)
.. +...++.|+..|...+..+.+.+|.+|+.+....+ .++.+.- ..+++.|.++.....+..=..|+.||+
T Consensus 137 ~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 137 PLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA 216 (249)
T ss_dssp TTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 22 33445778888887888899999999997643322 2333333 678888888887776655566777776
Q ss_pred hhc
Q 001196 159 AIT 161 (1125)
Q Consensus 159 Als 161 (1125)
+++
T Consensus 217 ~i~ 219 (249)
T 2qk1_A 217 ILI 219 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 73
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=86.42 E-value=2.6 Score=49.29 Aligned_cols=148 Identities=14% Similarity=0.175 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCc-----cccHHHHHHHHhhccchhHHHHHHHHHHhccchhh
Q 001196 51 EHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLL-----GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIRE 125 (1125)
Q Consensus 51 ShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LF-----k~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e 125 (1125)
--++.|+..+.. .+......|...|..|+...+..- .+.+..|+.+|...++.+...++.+|++++..-+.
T Consensus 293 g~i~~Lv~lL~~----~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~ 368 (529)
T 3tpo_A 293 GVVPQLVKLLGA----TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 368 (529)
T ss_dssp TCHHHHHHHHTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHH
T ss_pred cchHHHHHHhcC----CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHH
Confidence 344555553322 233456778888888887665432 22346788889888888888899999887533222
Q ss_pred h-hcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHH-----HHHHHHHHhhhcCC--CCchHHHHHHHHH
Q 001196 126 Q-LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLS-----VLYKRLVDMLEEKT--HLPAVLQSLGCIA 197 (1125)
Q Consensus 126 ~-~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls-----~L~e~Lv~~Le~~s--~l~T~L~aLgqIA 197 (1125)
+ ....+..+++.|..+...|++..-+.|+.+|..++......... .++..|++.|...+ -....|.+|..|.
T Consensus 369 ~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 369 QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2 12235568889999999999888888888887555322211111 13556777676554 3345677777777
Q ss_pred hhccc
Q 001196 198 QTAMP 202 (1125)
Q Consensus 198 ~~aP~ 202 (1125)
+++..
T Consensus 449 ~~~~~ 453 (529)
T 3tpo_A 449 QAAEK 453 (529)
T ss_dssp HHHHT
T ss_pred HHhHh
Confidence 66553
No 74
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=85.63 E-value=17 Score=36.02 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHhccCCc-H-HHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccc
Q 001196 15 FPVLQDDLLKILGAKHR-L-YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGG 92 (1125)
Q Consensus 15 ~~~ar~ELLKRLg~k~~-l-~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~ 92 (1125)
-......+++.|.+.++ + ...+..|.... +...++.|+..+. + .+......|...|..+.. ..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~-----~~~~~~~L~~~l~-~---~~~~vr~~a~~~L~~~~~------~~ 76 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG-----DERAVEPLIKALK-D---EDAWVRRAAADALGQIGD------ER 76 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC-----CGGGHHHHHHHTT-C---SSHHHHHHHHHHHHHHCC------GG
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHc-C---CCHHHHHHHHHHHHhhCC------HH
Confidence 34556788888888776 2 33333333222 3577888888553 2 223344556666665532 24
Q ss_pred cHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 001196 93 TEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 161 (1125)
Q Consensus 93 ~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls 161 (1125)
.+..|+.+|.+.++.+...++.+|..++.. ...+.|..+....++..-..|+.+|+.+.
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 568888999888888888889999887632 24555666666677878888999988554
No 75
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.52 E-value=15 Score=36.78 Aligned_cols=146 Identities=17% Similarity=0.182 Sum_probs=90.6
Q ss_pred HHHHHHHhccCCc-H-HHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHH
Q 001196 19 QDDLLKILGAKHR-L-YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEE 96 (1125)
Q Consensus 19 r~ELLKRLg~k~~-l-~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~ 96 (1125)
...|++.|.+..+ + ...+..|... -....++.|+..+.. .+......|...|..+.. ...+..
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~-----~~~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~------~~~~~~ 85 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKI-----GDERAVEPLIKALKD----EDAWVRRAAADALGQIGD------ERAVEP 85 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH-----CCGGGHHHHHHHTTC----SCHHHHHHHHHHHHHHCC------GGGHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHcC----CCHHHHHHHHHHHHhhCC------HHHHHH
Confidence 4678888887665 2 2233333332 235788888885432 223344556666666542 245688
Q ss_pred HHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHH
Q 001196 97 LVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRL 176 (1125)
Q Consensus 97 L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~L 176 (1125)
|+.+|.+.++.+...++.+|..++.. ...+.|..+....++..-..|+.+|..+.. .. .+..|
T Consensus 86 L~~~l~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~------~~~~L 148 (211)
T 3ltm_A 86 LIKALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-ER------AVEPL 148 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-GG------GHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-HH------HHHHH
Confidence 99999998888888999999987632 245667777677888888899999986533 22 24445
Q ss_pred HHhhhcCC--CCchHHHHHHHH
Q 001196 177 VDMLEEKT--HLPAVLQSLGCI 196 (1125)
Q Consensus 177 v~~Le~~s--~l~T~L~aLgqI 196 (1125)
...|...+ --...+.+|+.|
T Consensus 149 ~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 149 IKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHh
Confidence 55554433 113344555554
No 76
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=85.16 E-value=1 Score=45.70 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=39.6
Q ss_pred cccCceEEEecCCCCceEEEEEEEecCCCCeeEEEe-cCCCceeeecCcceEEEe
Q 001196 825 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLDKERWELL 878 (1125)
Q Consensus 825 ~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~Y-dDGD~E~L~L~~Ek~~~~ 878 (1125)
--+|.-|-+.|+.|+.||.|.|....+.. ...|.| |=|..+.+ .+++.+
T Consensus 48 ~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v----~~lr~l 97 (169)
T 3ntk_A 48 LKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAVT----QQFRQL 97 (169)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEEE----SCEECC
T ss_pred CCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEEh----hhhhcc
Confidence 34899999999999999999999998854 678888 77888873 355544
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=84.98 E-value=7.7 Score=42.14 Aligned_cols=118 Identities=21% Similarity=0.052 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhC--CcCccccHHHHHHHHhhccchhH
Q 001196 32 LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS--PLLLGGTEEELVNLLKEENEIIK 109 (1125)
Q Consensus 32 l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~--P~LFk~~v~~L~~lL~d~n~~vv 109 (1125)
+....-..+-...+.-+-+.-+..|...+ . +.+.+.-..|+.+|..|+... |.++.+-..++..+|..+|+.++
T Consensus 131 l~~eaae~Lgklkv~~~~~~V~~~l~sLl-~---Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~ 206 (265)
T 3b2a_A 131 MRIETIDVLSKLQPLEDSKLVRTYINELV-V---SPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIV 206 (265)
T ss_dssp HHHHHHHHHHHCCBSCCCHHHHHHHHHHH-T---CSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHH
T ss_pred HHHHHHHHhCcCCcccchHHHHHHHHHHH-h---CCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 44444555555666666777777777655 3 345677788999999999966 89999999999999999999999
Q ss_pred HHHHHHHHHh-ccchhhhhcccChhHHHHHHHHh-hcCChHHHHHH
Q 001196 110 EGILHVLAKA-GGTIREQLAATSSSVDLLLERLC-LEGSRRQAKYA 153 (1125)
Q Consensus 110 e~aLkaLAk~-gk~i~e~~~~~~s~l~~~L~~lA-leGTPrqAKyA 153 (1125)
+-+|-+|..+ ..++++...+..-.+.....++| ++|.|.-+--|
T Consensus 207 e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka 252 (265)
T 3b2a_A 207 ELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKA 252 (265)
T ss_dssp HHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 9999999975 34565555555556777788999 99999765433
No 78
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=84.97 E-value=7.8 Score=42.64 Aligned_cols=150 Identities=12% Similarity=0.105 Sum_probs=99.4
Q ss_pred CHHHHHHHHH-HHHhccCcchhhhHHHHHHHHHHHHhhCCcC----cc-ccHHHHHHHHhhc-cchhHHHHHHHHHHhcc
Q 001196 49 NKEHVKEILL-EVAAQKSSANAQFMQSCMDILGILARFSPLL----LG-GTEEELVNLLKEE-NEIIKEGILHVLAKAGG 121 (1125)
Q Consensus 49 NkShV~~LL~-~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L----Fk-~~v~~L~~lL~d~-n~~vve~aLkaLAk~gk 121 (1125)
..-.|+.|+. .+. ..+......|...|..|+..+|.. +. +-+..|+.+|..+ +..+...++-+|+.+..
T Consensus 79 ~~G~l~~Lv~~lL~----s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 79 QLSGMHLLVGRYLE----AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154 (296)
T ss_dssp HTTHHHHHHHTTTT----CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 3345666666 432 234466788999999999999853 21 4468999999864 66788899999998765
Q ss_pred chhhhh-cccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc--ch--HHHHHHHHHHhhhcCC-C-CchHHHHHH
Q 001196 122 TIREQL-AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL--KS--LSVLYKRLVDMLEEKT-H-LPAVLQSLG 194 (1125)
Q Consensus 122 ~i~e~~-~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~--~~--ls~L~e~Lv~~Le~~s-~-l~T~L~aLg 194 (1125)
..+... .......++.|.++...+++.--+.|+.+|..++..... .. -..++..|+..|...+ . ....|.+|+
T Consensus 155 ~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~ 234 (296)
T 1xqr_A 155 EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALC 234 (296)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHH
Confidence 433321 112345788888888889988888888888766543221 11 1235667777776554 2 344677888
Q ss_pred HHHhhccc
Q 001196 195 CIAQTAMP 202 (1125)
Q Consensus 195 qIA~~aP~ 202 (1125)
.|+...+.
T Consensus 235 ~l~~~~~~ 242 (296)
T 1xqr_A 235 SLVTDFPQ 242 (296)
T ss_dssp HHHTTCHH
T ss_pred HHHhCChh
Confidence 88876443
No 79
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=83.78 E-value=78 Score=37.56 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHH
Q 001196 70 QFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQ 149 (1125)
Q Consensus 70 ~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrq 149 (1125)
+.-.-|-.++--.-+.||.+=...+..+..++++++..+...+++.|-.+++. + .-+++..+|.++=....+.+
T Consensus 43 k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~----~i~kiaDvL~QlLqtdd~~E 116 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--E----NLPRVADILTQLLQTDDSAE 116 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--T----CHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--h----hhhhHHHHHHHHHhccchHH
Confidence 34455666777777777777777777777777777766666667766666654 1 23456777777766666666
Q ss_pred HHHHHHHHHhhcCCCccchHHHHHHHHHH
Q 001196 150 AKYAVHALAAITKDDGLKSLSVLYKRLVD 178 (1125)
Q Consensus 150 AKyAVr~LaAls~d~~~~~ls~L~e~Lv~ 178 (1125)
....-.+|+.+...+-...+..|+..|..
T Consensus 117 ~~~V~~sL~sllk~Dpk~tl~~lf~~i~~ 145 (507)
T 3u0r_A 117 FNLVNNALLSIFKMDAKGTLGGLFSQILQ 145 (507)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHcc
Confidence 65555555544443332344445555443
No 80
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=83.61 E-value=1.6 Score=46.28 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=40.7
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEe-cCCCceeeecCcceEEEe
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLDKERWELL 878 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~Y-dDGD~E~L~L~~Ek~~~~ 878 (1125)
-+|.-|-+.++.|+.||.|.|+...+. +...|.| |=|..|.+.+. .++.+
T Consensus 67 ~~G~~c~a~~~~d~~WyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~--~l~~l 117 (226)
T 4b9x_A 67 EIGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTD--QLQAI 117 (226)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECSS-SEEEEECTTTCCEEEEEGG--GEECC
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEecCCEEEEEHH--HhccC
Confidence 379999999999999999999998764 5677888 88999988765 34444
No 81
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=82.81 E-value=8.3 Score=43.45 Aligned_cols=152 Identities=14% Similarity=0.062 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCC----cC--ccccHHHHHHHHhhccc----hhHHHHHHHHHHhc
Q 001196 51 EHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSP----LL--LGGTEEELVNLLKEENE----IIKEGILHVLAKAG 120 (1125)
Q Consensus 51 ShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P----~L--Fk~~v~~L~~lL~d~n~----~vve~aLkaLAk~g 120 (1125)
-.|+.|++.+..+ ........|...|..||..++ .+ -.+.+..|+.+|...++ .+.+.++-+|..++
T Consensus 170 G~Ip~Lv~lL~~~---~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs 246 (354)
T 3nmw_A 170 GSVKALMECALEV---KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246 (354)
T ss_dssp THHHHHHHHHHHC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC---CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHH
Confidence 3477777754432 123455677888889988553 33 34667999999987543 25666666665543
Q ss_pred c---chhhh-hcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcC-CCcc-chH--HHHHHHHHHhhhcCC--CCchHH
Q 001196 121 G---TIREQ-LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITK-DDGL-KSL--SVLYKRLVDMLEEKT--HLPAVL 190 (1125)
Q Consensus 121 k---~i~e~-~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~-d~~~-~~l--s~L~e~Lv~~Le~~s--~l~T~L 190 (1125)
. .-+++ ..-.+...++.|..+-..|+...-+.|+.+|..++. +.+. ..+ ...+..|+..|..++ -.-...
T Consensus 247 ~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~ 326 (354)
T 3nmw_A 247 SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 326 (354)
T ss_dssp HHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHH
T ss_pred hhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 2 11111 112345678888888889999999999999998774 3221 011 123556666565544 234557
Q ss_pred HHHHHHHhhcccccc
Q 001196 191 QSLGCIAQTAMPVFE 205 (1125)
Q Consensus 191 ~aLgqIA~~aP~vfe 205 (1125)
.+|..|+...|..+.
T Consensus 327 ~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 327 AALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHHTTCCGGGC
T ss_pred HHHHHHHcCCHHHHh
Confidence 788888888777764
No 82
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=81.81 E-value=18 Score=37.85 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=67.0
Q ss_pred HHHHHHHhccCCc--HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHH
Q 001196 19 QDDLLKILGAKHR--LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEE 96 (1125)
Q Consensus 19 r~ELLKRLg~k~~--l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~ 96 (1125)
...|++.|+..++ -...+..|-... +...++.|+..+.. .+......|...|..+... +..+...+.-
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~-----~~~~~~~L~~~l~d----~~~~vR~~A~~aL~~l~~~-~~~~~~l~~~ 94 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG-----GQDAVRLAIEFCSD----KNYIRRDIGAFILGQIKIC-KKCEDNVFNI 94 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC-----CHHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCCC-TTTHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC-----CchHHHHHHHHHcC----CCHHHHHHHHHHHHHhccc-cccchHHHHH
Confidence 3667777776655 223333443333 45677777774432 1223334455555555421 2223333344
Q ss_pred HHH-HHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhh
Q 001196 97 LVN-LLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAI 160 (1125)
Q Consensus 97 L~~-lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAl 160 (1125)
|.. ++.+.++.+...++.+|+.++...+ .....+.+.|..+....++..-..|+.+|..+
T Consensus 95 L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 95 LNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 443 4556666666777777777653211 11234566666666666666666677777643
No 83
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=80.96 E-value=20 Score=39.08 Aligned_cols=176 Identities=14% Similarity=0.088 Sum_probs=111.5
Q ss_pred ccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchh
Q 001196 45 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIR 124 (1125)
Q Consensus 45 ~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~ 124 (1125)
..++|++-|.+.|. .|.- ..+.++++ . ....+..|..+|.+.|+.++..+|.+|-..-+.++
T Consensus 4 ~~ii~~~~lre~L~-------sWki---K~a~ela~----~----~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~ 65 (265)
T 3b2a_A 4 NNPISKTELRELVL-------SWQI---LDAVSLAL----E----DKRALFLILELAGEDDETTRLRAFVALGEILKRAD 65 (265)
T ss_dssp CCCCCHHHHHHHHH-------TTCH---HHHHHHHH----H----CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC
T ss_pred cccccHHHHHHHHH-------HhhH---HHHHHHHH----h----chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc
Confidence 46888888888876 2321 11222221 1 12234677899999999999999999887644322
Q ss_pred hhh-cccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc--chHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhcc
Q 001196 125 EQL-AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL--KSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAM 201 (1125)
Q Consensus 125 e~~-~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~--~~ls~L~e~Lv~~Le~~s~l~T~L~aLgqIA~~aP 201 (1125)
... ...-..+.+.+-+++.+-+.+-|=+|++||-.+..+-.. .+|.-+.+.+.+-+..+ +-+-++-+.-.+..+.|
T Consensus 66 ~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~-~~il~~eaae~Lgklkv 144 (265)
T 3b2a_A 66 SDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESP-DDMMRIETIDVLSKLQP 144 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHCCB
T ss_pred ccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCC-CchHHHHHHHHhCcCCc
Confidence 111 123445777788888899999999999999888766332 45666777777766633 33444555555555533
Q ss_pred ccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCc
Q 001196 202 PVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVK 259 (1125)
Q Consensus 202 ~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~ 259 (1125)
..+ ...|.+||.. || . |..-+.|..||++|+|..-...
T Consensus 145 ~~~---~~~V~~~l~s-Ll-~---------------Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 145 LED---SKLVRTYINE-LV-V---------------SPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp SCC---CHHHHHHHHH-HH-T---------------CSSHHHHHHHHHHHHHHGGGCS
T ss_pred ccc---hHHHHHHHHH-HH-h---------------CCChhHHHHHHHHHHHhhcccC
Confidence 333 4456777653 44 2 2234678999999999775443
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=80.09 E-value=25 Score=45.11 Aligned_cols=177 Identities=13% Similarity=0.128 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhhCCcCcc--ccHHHHHHHHhhccchhHHHHHHHHHHhccchhh---hhcccChhHHHHHHHHhhcCC-
Q 001196 73 QSCMDILGILARFSPLLLG--GTEEELVNLLKEENEIIKEGILHVLAKAGGTIRE---QLAATSSSVDLLLERLCLEGS- 146 (1125)
Q Consensus 73 ~~AleLL~~IS~~~P~LFk--~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e---~~~~~~s~l~~~L~~lAleGT- 146 (1125)
..+..|-..+....+.... +-++.|.+.+.+.+.. +.+|.++..+...+.. ..+-.-..|-..|..++-.+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~ 110 (986)
T 2iw3_A 33 EIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKE 110 (986)
T ss_dssp HHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchH
Confidence 3344444444433222222 2346777777764433 7777777765433211 011111223444555554454
Q ss_pred -hHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCCCCchH---HHHHHHHHhhccccccchhHHHHHHHHHhhhcc
Q 001196 147 -RRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAV---LQSLGCIAQTAMPVFETRESEIEEFIKSKILRC 222 (1125)
Q Consensus 147 -PrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s~l~T~---L~aLgqIA~~aP~vfe~~~~eI~~fIiK~LLl~ 222 (1125)
+..|.+|+.+|+...+.. ....++..|+..|.....+.+. |..|+.|+..+|..+...-.+|+-.+..
T Consensus 111 v~~aa~~~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~----- 182 (986)
T 2iw3_A 111 IQSVASETLISIVNAVNPV---AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSE----- 182 (986)
T ss_dssp HHHHHHHHHHHHHHHSCGG---GHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHh-----
Confidence 466789999888655432 2466788888888665555544 5555555555677766666666655432
Q ss_pred cCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHH
Q 001196 223 SNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLL 271 (1125)
Q Consensus 223 ~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~ll 271 (1125)
..|+.-++. |-.|.++|+..|--+.+.++.+.+..++
T Consensus 183 ---------~~~d~k~~v---~~~~~~~~~~~~~~~~n~d~~~~~~~~~ 219 (986)
T 2iw3_A 183 ---------TMWDTKKEV---KAAATAAMTKATETVDNKDIERFIPSLI 219 (986)
T ss_dssp ---------HTTCSSHHH---HHHHHHHHHHHGGGCCCTTTGGGHHHHH
T ss_pred ---------hcccCcHHH---HHHHHHHHHHHHhcCCCcchhhhHHHHH
Confidence 235444443 4458999999887777666666555333
No 85
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=79.73 E-value=2.3 Score=45.32 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=37.1
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEe-cCCCceeeecC
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLD 871 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~Y-dDGD~E~L~L~ 871 (1125)
-+|.-|-+.|. |..||.|.|+...+. ..-.|.| |-|..+.+.+.
T Consensus 67 ~~G~~c~a~~~-d~~wyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~ 111 (246)
T 2hqx_A 67 RRGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPST 111 (246)
T ss_dssp CTTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECGG
T ss_pred CCCCEEEEEcC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCeEEEeHH
Confidence 38999999999 999999999999864 4778888 66999988653
No 86
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=79.70 E-value=35 Score=42.51 Aligned_cols=147 Identities=12% Similarity=0.093 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhh---ccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCC
Q 001196 70 QFMQSCMDILGILARFSPLLLGGTEEELVNLLKE---ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS 146 (1125)
Q Consensus 70 ~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d---~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGT 146 (1125)
...+.++-.|..|+...+.-...++..++.+|.. +++.+...++.+|..+...+.... ..-..+++.|-..- +.
T Consensus 464 ~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l--~~ 540 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMINSVLPLVLHAL--GN 540 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHTTTHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHh--CC
Confidence 3467788888888888777666667777776643 355667778888887765433211 11111222222211 23
Q ss_pred hHHHHHHHHHHHhhcCCCcc---chHHHHHHHHHHhhhcCC----CCchHHHHHHHHHhhcc-ccccchhHHHHHHHHHh
Q 001196 147 RRQAKYAVHALAAITKDDGL---KSLSVLYKRLVDMLEEKT----HLPAVLQSLGCIAQTAM-PVFETRESEIEEFIKSK 218 (1125)
Q Consensus 147 PrqAKyAVr~LaAls~d~~~---~~ls~L~e~Lv~~Le~~s----~l~T~L~aLgqIA~~aP-~vfe~~~~eI~~fIiK~ 218 (1125)
|.-+.+|+.+|..++.+-.. .++..|+..|...+.... .....+.++|.|+...| ..+...-..++..++..
T Consensus 541 ~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~ 620 (963)
T 2x19_B 541 PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQ 620 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 76677888887766643221 356777777777665422 44556888888887775 55555566666665543
Q ss_pred h
Q 001196 219 I 219 (1125)
Q Consensus 219 L 219 (1125)
+
T Consensus 621 l 621 (963)
T 2x19_B 621 L 621 (963)
T ss_dssp H
T ss_pred H
Confidence 3
No 87
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=79.20 E-value=3.6 Score=40.60 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=30.0
Q ss_pred CcccCceEEEecCCCCceEEEEEEEecC----CCCeeEEEecC
Q 001196 824 EDLIGYRIKVWWPMDKQFYEGTIKSYDP----IKKKHVILYDD 862 (1125)
Q Consensus 824 ~~lVG~rikV~WP~D~~wY~G~V~~yd~----~~~kH~V~YdD 862 (1125)
.-.||.+|.|||+ |..||.+.|..... ...++.|.|.+
T Consensus 12 ~~~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~g 53 (133)
T 1wgs_A 12 TVEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVG 53 (133)
T ss_dssp CCCTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTT
T ss_pred ccCCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccC
Confidence 3459999999998 77999999998664 23368888875
No 88
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=79.05 E-value=6.8 Score=45.88 Aligned_cols=150 Identities=13% Similarity=0.045 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCC----cC--ccccHHHHHHHHhhccch----hHHHHHHHHHHhcc
Q 001196 52 HVKEILLEVAAQKSSANAQFMQSCMDILGILARFSP----LL--LGGTEEELVNLLKEENEI----IKEGILHVLAKAGG 121 (1125)
Q Consensus 52 hV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P----~L--Fk~~v~~L~~lL~d~n~~----vve~aLkaLAk~gk 121 (1125)
.|+.|++.+..+ ........|...|..||..++ .+ -.+.+..|+.+|...++. +.+.++.+|.+++.
T Consensus 287 aI~~LV~lLl~s---~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~ 363 (458)
T 3nmz_A 287 SVKALMECALEV---KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 363 (458)
T ss_dssp HHHHHHHHHTTC---CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcC---CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHh
Confidence 456666643332 223455678888888888553 33 345678999999875432 56666666655432
Q ss_pred ---chhhh-hcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcC-CCcc-ch--HHHHHHHHHHhhhcCC--CCchHHH
Q 001196 122 ---TIREQ-LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITK-DDGL-KS--LSVLYKRLVDMLEEKT--HLPAVLQ 191 (1125)
Q Consensus 122 ---~i~e~-~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~-d~~~-~~--ls~L~e~Lv~~Le~~s--~l~T~L~ 191 (1125)
.-+++ ..-.....++.|..+-..|+...-+.|+.+|..++. +.+. .. -...+..|+..|..++ ---..+.
T Consensus 364 ~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~ 443 (458)
T 3nmz_A 364 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 443 (458)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHH
T ss_pred cccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 11111 111344578888888889999989999999997774 3221 11 1123455666555444 2344566
Q ss_pred HHHHHHhhccccc
Q 001196 192 SLGCIAQTAMPVF 204 (1125)
Q Consensus 192 aLgqIA~~aP~vf 204 (1125)
+|..|+...|.-|
T Consensus 444 AL~nL~~~~p~ky 456 (458)
T 3nmz_A 444 ALRNLMANRPAKY 456 (458)
T ss_dssp HHHHHHTCCSCC-
T ss_pred HHHHHHcCCHhhh
Confidence 7777777666554
No 89
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=76.82 E-value=3.5 Score=42.76 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=41.1
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEe-cCCCceeeecCcceEEEec
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLDKERWELLD 879 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~Y-dDGD~E~L~L~~Ek~~~~~ 879 (1125)
-+|.-|-+.++.|+.||.|.|+...+. +...|.| |=|..|.+.+. +++.+.
T Consensus 67 ~~G~~c~a~~~~d~~wyRa~V~~~~~~-~~~~V~~vDyG~~~~v~~~--~l~~l~ 118 (201)
T 4b9w_A 67 EIGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTD--QLQAIL 118 (201)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETTTCCEEEECGG--GEEECC
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEccCCEEEEEHH--HhccCh
Confidence 379999999999999999999998764 4577888 88999987654 455554
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=76.04 E-value=1.3 Score=50.36 Aligned_cols=103 Identities=11% Similarity=0.010 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHhccCCcHHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH
Q 001196 15 FPVLQDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE 94 (1125)
Q Consensus 15 ~~~ar~ELLKRLg~k~~l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v 94 (1125)
+--+..-|.|=++..++ +++.+-.|+..-|...+-++.|...+..+..+.+......|.=-.-.+-...|.+.+..+
T Consensus 102 ~iLv~Nsl~kDl~~~N~---~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~ 178 (355)
T 3tjz_B 102 VIIVTSSLTKDMTGKED---SYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWV 178 (355)
T ss_dssp GGGGHHHHHHHHHSSCH---HHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTH
T ss_pred HHHHHHHHHhhcCCCcH---hHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 33445666677777775 567888888888999998998888776655444433333333333345577888888888
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHhc
Q 001196 95 EELVNLLKEENEIIKEGILHVLAKAG 120 (1125)
Q Consensus 95 ~~L~~lL~d~n~~vve~aLkaLAk~g 120 (1125)
.++.++|.+.|+.++..+|.+|+.+.
T Consensus 179 ~~l~~ll~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 179 NEAQEAASSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 99999999999988888888888664
No 91
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=74.89 E-value=79 Score=39.56 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=88.4
Q ss_pred hcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCcccc-----HHHHHHHHhhccchhHHHHHHHHH
Q 001196 43 CSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGT-----EEELVNLLKEENEIIKEGILHVLA 117 (1125)
Q Consensus 43 sS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~-----v~~L~~lL~d~n~~vve~aLkaLA 117 (1125)
||.++....-++.|+..+... ........++++|...+- .-.+ +.+ ++-|..++. ++.+...++-+|.
T Consensus 247 ~s~lfl~e~~~~~l~~~~~~~---~~~~~~~a~L~lLsaACi-~~~c-R~~I~~~~~~~L~~~l~--~~~ir~lAavvL~ 319 (778)
T 3opb_A 247 CSEIFLTKGLSKLFKKRVFEE---QDLQFTKELLRLLSSACI-DETM-RTYITENYLQLLERSLN--VEDVQIYSALVLV 319 (778)
T ss_dssp HHHHHSTTTHHHHHHHHHHSS---CCHHHHHHHHHHHHHHCC-SHHH-HHHHHHHHHHHHHHHTT--SGGGHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHhcc---cchHHHHHHHHHHHHHhC-CcHH-HHHHHHhHHHHHHHHhc--cHHHHHHHHHHHH
Confidence 667777777777777766432 222344455555544322 2222 333 334444443 3456778888888
Q ss_pred HhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccc----hHHHHHHHHHHhhhcC-C--CCchHH
Q 001196 118 KAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK----SLSVLYKRLVDMLEEK-T--HLPAVL 190 (1125)
Q Consensus 118 k~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~----~ls~L~e~Lv~~Le~~-s--~l~T~L 190 (1125)
+.+..-.... ..-..+.++|.++-..+.-..-++||..|+-++-+...+ .-...++.|+..|... . -.-..|
T Consensus 320 KL~~~~~~~~-~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal 398 (778)
T 3opb_A 320 KTWSFTKLTC-INLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLL 398 (778)
T ss_dssp HHTGGGTCTT-CCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHH
T ss_pred HHhcCCCCCc-CcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHH
Confidence 8654221111 122357888888877766555799999999888775421 1133466777767642 1 233456
Q ss_pred HHHHHHHhhcccccc
Q 001196 191 QSLGCIAQTAMPVFE 205 (1125)
Q Consensus 191 ~aLgqIA~~aP~vfe 205 (1125)
..|+-+..+.|.+-+
T Consensus 399 ~IL~NLt~~~~~~~~ 413 (778)
T 3opb_A 399 VIMANLSTLPEEXXX 413 (778)
T ss_dssp HHHHHTTCCCCCCCC
T ss_pred HHHHHhcCCCcccch
Confidence 667777676665544
No 92
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=74.57 E-value=1.5e+02 Score=37.27 Aligned_cols=194 Identities=9% Similarity=0.079 Sum_probs=111.8
Q ss_pred hhHHHHHHHHHHHHhhC--Cc-Cccc-----cHHH-----HHHHHhhc---cchhHHHHHHHHHHhccchhhhhcccChh
Q 001196 70 QFMQSCMDILGILARFS--PL-LLGG-----TEEE-----LVNLLKEE---NEIIKEGILHVLAKAGGTIREQLAATSSS 133 (1125)
Q Consensus 70 ~~~~~AleLL~~IS~~~--P~-LFk~-----~v~~-----L~~lL~d~---n~~vve~aLkaLAk~gk~i~e~~~~~~s~ 133 (1125)
...+.|+-+|..|+... +. -... .+.. +...|.+. .+.+...++.+|+.|...+... ....
T Consensus 420 ~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~---~l~~ 496 (960)
T 1wa5_C 420 KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA---QLIE 496 (960)
T ss_dssp HHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH---HHHH
Confidence 35577888888887532 11 1111 2222 33444555 5567778889998886543211 1222
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhhcCCC------------c--cchHHHHHHHHHHhhhcCC-------CCchHHHH
Q 001196 134 VDLLLERLCLEGSRRQAKYAVHALAAITKDD------------G--LKSLSVLYKRLVDMLEEKT-------HLPAVLQS 192 (1125)
Q Consensus 134 l~~~L~~lAleGTPrqAKyAVr~LaAls~d~------------~--~~~ls~L~e~Lv~~Le~~s-------~l~T~L~a 192 (1125)
+++.|.+.-...+++..-+|+.+|..++... . ..++..|+..|+..|.... .....+.+
T Consensus 497 ~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~a 576 (960)
T 1wa5_C 497 LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS 576 (960)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHH
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHH
Confidence 3333333333446777788889988765421 1 1457788888888777641 34567889
Q ss_pred HHHHHhhccccccchhHHHHHHHHHhhhcccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhcCCcccccccchHHHHH
Q 001196 193 LGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLG 272 (1125)
Q Consensus 193 LgqIA~~aP~vfe~~~~eI~~fIiK~LLl~~~~~~~~~~~eW~~~Se~~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llk 272 (1125)
|+.++...++.|..+...|+..++..+...... +.. -....+.+-++..-+.+...+......+.++.
T Consensus 577 l~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~----------~~~--~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p 644 (960)
T 1wa5_C 577 IFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKN----------PSN--PRFTHYTFESIGAILNYTQRQNLPLLVDSMMP 644 (960)
T ss_dssp HHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTS----------CCC--HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhC----------CCC--cHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 999998888888888888888776644322111 011 11224566666655555332233344556777
Q ss_pred HHHHhh
Q 001196 273 ILKSML 278 (1125)
Q Consensus 273 LL~~ll 278 (1125)
+|..++
T Consensus 645 ~~~~iL 650 (960)
T 1wa5_C 645 TFLTVF 650 (960)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
No 93
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=74.23 E-value=3.9 Score=43.35 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=40.5
Q ss_pred CcccCceEEEecCCCC--ceEEEEEEEecCCCC--eeEEEecCCCceeeecCc
Q 001196 824 EDLIGYRIKVWWPMDK--QFYEGTIKSYDPIKK--KHVILYDDEDVEVLRLDK 872 (1125)
Q Consensus 824 ~~lVG~rikV~WP~D~--~wY~G~V~~yd~~~~--kH~V~YdDGD~E~L~L~~ 872 (1125)
.=.||.||-..|.+.. .||.|.|..-..... ++.|-||||...++.+..
T Consensus 68 ~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~Yv~~~~ 120 (213)
T 3dlm_A 68 KLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSE 120 (213)
T ss_dssp GCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEEEECGGG
T ss_pred EEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcceecCce
Confidence 4459999999999764 799999998776444 689999999999887764
No 94
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=73.64 E-value=28 Score=39.55 Aligned_cols=177 Identities=10% Similarity=0.075 Sum_probs=99.5
Q ss_pred chhhHHHHHHHHHhccCCcHHHHHHHHHHHhcccccCHHHHH-----HHHHHHHhccCcchhhhHHHHHHHHHHHHhhCC
Q 001196 13 IYFPVLQDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVK-----EILLEVAAQKSSANAQFMQSCMDILGILARFSP 87 (1125)
Q Consensus 13 ~~~~~ar~ELLKRLg~k~~l~etlk~LL~RsS~lifNkShV~-----~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P 87 (1125)
+..++.++ .+.+.+.+--..-.+..+.|.-+++.+-++.+ .|+=.+.+.....+-..-.-.-=.|..++...+
T Consensus 23 ~k~~v~qe--~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~ 100 (355)
T 3tjz_B 23 EKSAVLQE--ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE 100 (355)
T ss_dssp CHHHHHHH--GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS
T ss_pred hHHHHHHH--HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH
Confidence 33444443 34444433222334445555555666666632 222223333222222222333334455666656
Q ss_pred cCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccc
Q 001196 88 LLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK 167 (1125)
Q Consensus 88 ~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~ 167 (1125)
.++ -.+..|.+-+.+.|+.+...+|++|.++.- +..-..+...+++.....+|-..|.|+-|.+-+......
T Consensus 101 e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~------~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe- 172 (355)
T 3tjz_B 101 DVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD------STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD- 172 (355)
T ss_dssp CGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC------TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-
T ss_pred HHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-
Confidence 666 567999999999999999999999998741 122344566666766677899999999998877765432
Q ss_pred hHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhh
Q 001196 168 SLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQT 199 (1125)
Q Consensus 168 ~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~ 199 (1125)
.....++.+.+.|...+ -....|++|.+|.+.
T Consensus 173 ~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 173 VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 22334445555454443 233455666666554
No 95
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=72.18 E-value=41 Score=42.01 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=46.9
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHhccc--hhhhhcccChhHHHHHHHHhhcCChHH--HH-HHHHHHHhhcCCCc--c-
Q 001196 95 EELVNLLKEENEIIKEGILHVLAKAGGT--IREQLAATSSSVDLLLERLCLEGSRRQ--AK-YAVHALAAITKDDG--L- 166 (1125)
Q Consensus 95 ~~L~~lL~d~n~~vve~aLkaLAk~gk~--i~e~~~~~~s~l~~~L~~lAleGTPrq--AK-yAVr~LaAls~d~~--~- 166 (1125)
..|+.++...++.+.+.++++|.++... .+..+ ....-++.|-.+...|+..+ +| .|+++|+.++-..+ .
T Consensus 460 p~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~l--vqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~ 537 (778)
T 3opb_A 460 SFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQL--AQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI 537 (778)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHH--HHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHH--HHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence 3444555545556677778888876532 12222 23455777888888887653 44 78888876652211 1
Q ss_pred ----chHHHHHHHHHHhhh
Q 001196 167 ----KSLSVLYKRLVDMLE 181 (1125)
Q Consensus 167 ----~~ls~L~e~Lv~~Le 181 (1125)
... ..+..|+.-|.
T Consensus 538 f~~~~~~-~aI~pLv~LL~ 555 (778)
T 3opb_A 538 FKKYSAL-NAIPFLFELLP 555 (778)
T ss_dssp SSSSCST-THHHHHHHTSC
T ss_pred cCCCccc-cchHHHHHHcC
Confidence 111 35677777776
No 96
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=71.33 E-value=21 Score=41.02 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCc-----cccHHHHHHHHhhccchhHHHHHHHHHHhccchhhh
Q 001196 52 HVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLL-----GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ 126 (1125)
Q Consensus 52 hV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LF-----k~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~ 126 (1125)
.|+.|+..+... +......|...|..++...|..= .+-+..|+.+|...++.+...++.+|.++...-++.
T Consensus 3 ~l~~lv~~L~s~----~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 3 TIPKAVQYLSSQ----DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp CHHHHHHHHHSS----CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred CHHHHHHHHCCC----CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 367777755432 23455667888888887766432 234689999999888778888888888765321111
Q ss_pred -hcccChhHHHHHHHHhh-cCChHHHHHHHHHHHhhcCCCccc--hHHHHHHHHHHhh
Q 001196 127 -LAATSSSVDLLLERLCL-EGSRRQAKYAVHALAAITKDDGLK--SLSVLYKRLVDML 180 (1125)
Q Consensus 127 -~~~~~s~l~~~L~~lAl-eGTPrqAKyAVr~LaAls~d~~~~--~ls~L~e~Lv~~L 180 (1125)
..-.....++.|.++.. .|++.....|+.+|..++...... .....+..|+..|
T Consensus 79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence 11123455777777777 788988899999998888764321 2234566677766
No 97
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=69.64 E-value=6.4 Score=38.71 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=38.8
Q ss_pred CCcccCceEEEecCCCC----ceEEEEEEEecCCCCeeEEEecCCC---ceeeecCcceEEEecC
Q 001196 823 IEDLIGYRIKVWWPMDK----QFYEGTIKSYDPIKKKHVILYDDED---VEVLRLDKERWELLDN 880 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~----~wY~G~V~~yd~~~~kH~V~YdDGD---~E~L~L~~Ek~~~~~~ 880 (1125)
..--+|..|.|||..+. .||.|+|+... ...+.|.|++=+ .|++. -++++-+-.
T Consensus 59 ~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k--g~f~~V~y~~~~~~~~EiV~--~~rlR~~n~ 119 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANEQEPCGWWLARVRMMK--GDFYVIEYAACDATYNEIVT--LERLRPVNP 119 (128)
T ss_dssp -CCCTTCEEEEEECC---CCCEEEEEEEEEEE--TTEEEEEETTC----CEEEC--GGGEEECCC
T ss_pred cCCCCCCEEEEEecCCCCCcCccEEEEEEEee--CCEEEEEEcCCCCCcceEEe--hhheEeCCC
Confidence 34459999999999877 89999999998 468999998744 34544 566666654
No 98
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=68.27 E-value=21 Score=41.05 Aligned_cols=168 Identities=15% Similarity=0.158 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHH
Q 001196 32 LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEG 111 (1125)
Q Consensus 32 l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~ 111 (1125)
.+..++-|+..-.|.++ .+-+++||. +.. +.+......+.++|..+....+.+....+..|..+|.+++..++-.
T Consensus 45 ~L~q~~EL~l~~dpsLl-~~fl~~il~-f~~---d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~ 119 (386)
T 3o2t_A 45 VLKQVQELIINKDPTLL-DNFLDEIIA-FQA---DKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKK 119 (386)
T ss_dssp HHHHHHHHHHTTCGGGG-GGGHHHHHG-GGG---CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHhccCHHHH-HHHHHHHHH-hcc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 56666666554445444 455666665 332 2334556678889999999999999888899999999888877767
Q ss_pred HHHHHHHhccc-hhhhhc--cc-C---hhHH---HHHH----HHhh---cCChHHH-HHHHHHHHhhcCCC---------
Q 001196 112 ILHVLAKAGGT-IREQLA--AT-S---SSVD---LLLE----RLCL---EGSRRQA-KYAVHALAAITKDD--------- 164 (1125)
Q Consensus 112 aLkaLAk~gk~-i~e~~~--~~-~---s~l~---~~L~----~lAl---eGTPrqA-KyAVr~LaAls~d~--------- 164 (1125)
++++++.+-+- |+ +.. +. . ...- ..|+ ++.- .|.+..| ||.-+++.+.+...
T Consensus 120 ~I~~~tslYpl~f~-~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~ 198 (386)
T 3o2t_A 120 AILTMTQLYKVALQ-WMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQ 198 (386)
T ss_dssp HHHHHHHHHHHHHH-HHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGG
T ss_pred HHHHHHHHHHHHHH-HHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 77766643110 11 000 11 0 0111 1111 1211 2334443 88888887666321
Q ss_pred c-----------c---------chHHHHHHHHHHhhhcC---C-CCchHHHHHHHHHhhcccccc
Q 001196 165 G-----------L---------KSLSVLYKRLVDMLEEK---T-HLPAVLQSLGCIAQTAMPVFE 205 (1125)
Q Consensus 165 ~-----------~---------~~ls~L~e~Lv~~Le~~---s-~l~T~L~aLgqIA~~aP~vfe 205 (1125)
+ . .-...+++.|+..|... + .+.+.|.+|+-|++.-|....
T Consensus 199 ~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~ 263 (386)
T 3o2t_A 199 EHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMS 263 (386)
T ss_dssp TTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHH
T ss_pred CCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHH
Confidence 0 0 11355677777766643 1 677889999999998887754
No 99
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=64.91 E-value=52 Score=34.79 Aligned_cols=117 Identities=16% Similarity=0.194 Sum_probs=65.4
Q ss_pred HHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHH
Q 001196 76 MDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVH 155 (1125)
Q Consensus 76 leLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr 155 (1125)
--.|..|+..||.++.+-++++..+|.+.|..-.-.+|..++..|-. .+..-.-|.++|..+--.++.-.---||-
T Consensus 128 ~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen----~~~yv~PfLprL~aLL~D~deiVRaSaVE 203 (253)
T 2db0_A 128 SYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN----SFKYVNPFLPRIINLLHDGDEIVRASAVE 203 (253)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT----THHHHGGGHHHHHGGGGCSSHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc----CccccCcchHHHHHHHcCcchhhhHHHHH
Confidence 35688899999999999999999999886654344455555554422 11122235555555544455433335666
Q ss_pred HHHhhcCCCccchHHHHHHHHHHhhhcCCCC--chHHHHHHHHHh
Q 001196 156 ALAAITKDDGLKSLSVLYKRLVDMLEEKTHL--PAVLQSLGCIAQ 198 (1125)
Q Consensus 156 ~LaAls~d~~~~~ls~L~e~Lv~~Le~~s~l--~T~L~aLgqIA~ 198 (1125)
.|.-++.... .+..++...+..+++.+.+ -.+-.+|+-|+.
T Consensus 204 tL~~lA~~np--klRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 204 ALVHLATLND--KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHTSCH--HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCH--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 6654443222 2445555555556555522 223444555443
No 100
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=63.49 E-value=7.7 Score=46.55 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=41.0
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEe-cCCCceeeecCcceEEEec
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILY-DDEDVEVLRLDKERWELLD 879 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~Y-dDGD~E~L~L~~Ek~~~~~ 879 (1125)
-+|.-|-+.|. |..||.|.|+..++ .+...|.| |=|..|.+.+.. ++.+.
T Consensus 413 ~~G~~c~a~~~-d~~wyRa~I~~v~~-~~~~~V~fvDyGn~e~v~~~~--Lr~l~ 463 (570)
T 3bdl_A 413 RRGEFCIAKFV-DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTR--LGTLS 463 (570)
T ss_dssp CTTCEEEEECT-TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGGG--EECCC
T ss_pred CcCCEEEEEEC-CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEEHHH--CccCC
Confidence 38999999999 99999999999997 56778888 779999887653 44443
No 101
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=63.33 E-value=31 Score=34.46 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh------ccchhHHHHHHHHHHhccchh
Q 001196 68 NAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE------ENEIIKEGILHVLAKAGGTIR 124 (1125)
Q Consensus 68 ~~~~~~~AleLL~~IS~~~P~LFk~~v------~~L~~lL~d------~n~~vve~aLkaLAk~gk~i~ 124 (1125)
+....-.|+.||..+.+.|...|...+ ++|++++.. .+..|...+|..+..|+..|+
T Consensus 61 n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 61 QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 445667899999999999999998875 667777753 345678889999998875543
No 102
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=59.88 E-value=35 Score=36.10 Aligned_cols=137 Identities=16% Similarity=0.265 Sum_probs=82.2
Q ss_pred ccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccch-hHHHHHHHHHHhccchhh
Q 001196 47 LFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEI-IKEGILHVLAKAGGTIRE 125 (1125)
Q Consensus 47 ifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~-vve~aLkaLAk~gk~i~e 125 (1125)
.||++-+.++|..+..+ -| .....|+.+|..|+..+|.++...+..|+-+|..+... +..++-++|-..++-
T Consensus 28 ~~d~~~l~~lI~~LDDD--lw--tV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i--- 100 (253)
T 2db0_A 28 KYDESVLKKLIELLDDD--LW--TVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE--- 100 (253)
T ss_dssp HHCHHHHHHHHHHTTCS--CH--HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---
T ss_pred HhhHHHHHHHHHHhccH--HH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh---
Confidence 57999999999854321 12 34566999999999999999999999999998886542 222333333322221
Q ss_pred hhcccChhHHHHH-HHHhhcCChHHH----HHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCCCCchHHHHHHHHHh
Q 001196 126 QLAATSSSVDLLL-ERLCLEGSRRQA----KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQ 198 (1125)
Q Consensus 126 ~~~~~~s~l~~~L-~~lAleGTPrqA----KyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s~l~T~L~aLgqIA~ 198 (1125)
-|..-..++++| .+|.. |.| ++ -||.--|+... ...+..++..|...|+.. +-.-.|++|.-|.-
T Consensus 101 -~Pe~v~~vVp~lfanyri-gd~-kikIn~~yaLeeIaran----P~l~~~v~rdi~smltsk-d~~Dkl~aLnFi~a 170 (253)
T 2db0_A 101 -KPELVKSMIPVLFANYRI-GDE-KTKINVSYALEEIAKAN----PMLMASIVRDFMSMLSSK-NREDKLTALNFIEA 170 (253)
T ss_dssp -CHHHHHHHHHHHHHHSCC-CSH-HHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHTSCS-SHHHHHHHHHHHHT
T ss_pred -CHHHHHhhHHHHHHHHhc-CCc-cceecHHHHHHHHHHhC----hHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Confidence 122234455555 45555 544 33 35554455222 124567788888888743 33444555544443
No 103
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=59.34 E-value=28 Score=34.20 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhhccchhHHHHHHHHHHhccch
Q 001196 50 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKEENEIIKEGILHVLAKAGGTI 123 (1125)
Q Consensus 50 kShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~L~~lL~d~n~~vve~aLkaLAk~gk~i 123 (1125)
++.+..|.+++.. .+....-.|+.||..+.+.|...|...+ ++|++++...++.|...+|..+..|+..|
T Consensus 41 k~a~rai~Krl~~----~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 41 KDCLRSIMRRVNH----KDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 4555555554432 2335567789999999999999998654 67777776666778888888888887555
Q ss_pred h
Q 001196 124 R 124 (1125)
Q Consensus 124 ~ 124 (1125)
+
T Consensus 117 ~ 117 (140)
T 3ldz_A 117 K 117 (140)
T ss_dssp T
T ss_pred C
Confidence 4
No 104
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.84 E-value=14 Score=34.10 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=33.4
Q ss_pred CCcccCceEEEecC---CCCceEEEEEEEecCCCC--eeEEEecCCC
Q 001196 823 IEDLIGYRIKVWWP---MDKQFYEGTIKSYDPIKK--KHVILYDDED 864 (1125)
Q Consensus 823 ~~~lVG~rikV~WP---~D~~wY~G~V~~yd~~~~--kH~V~YdDGD 864 (1125)
+.-.||++|.|+++ .+..||.+.|.......+ +..|.|.+=+
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~N 54 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFN 54 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSC
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCC
Confidence 45569999999997 588999999999887543 5788887543
No 105
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=56.54 E-value=29 Score=43.44 Aligned_cols=144 Identities=15% Similarity=0.042 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHHHHhh-----ccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcC
Q 001196 71 FMQSCMDILGILARFSPLLLGGTEEELVNLLKE-----ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEG 145 (1125)
Q Consensus 71 ~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d-----~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleG 145 (1125)
..+.|+-.|..|+..++.--..++..|+.+|.. .++.+...++.+|..+...+... +..-..+++.|-+. +.
T Consensus 480 ~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~-l~- 556 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRG-LN- 556 (971)
T ss_dssp HHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHH-HH-
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH-hC-
Confidence 567777788888887776555666777765532 25567778888888776433211 11112223322222 12
Q ss_pred ChHHHHHHHHHHHhhcCCCcc---chHHHHHHHHHHhhhcCC----CCchHHHHHHHHHhhcc-ccccchhHHHHHHHHH
Q 001196 146 SRRQAKYAVHALAAITKDDGL---KSLSVLYKRLVDMLEEKT----HLPAVLQSLGCIAQTAM-PVFETRESEIEEFIKS 217 (1125)
Q Consensus 146 TPrqAKyAVr~LaAls~d~~~---~~ls~L~e~Lv~~Le~~s----~l~T~L~aLgqIA~~aP-~vfe~~~~eI~~fIiK 217 (1125)
|+.+.+|+.+|..++.+-.. .++..|+..+...+.... .....+.+||.|+...| ..+...-..++..++.
T Consensus 557 -~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~ 635 (971)
T 2x1g_F 557 -SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFE 635 (971)
T ss_dssp -SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 66677777777766643221 345566666666666431 45677888898887665 3333333444444444
Q ss_pred h
Q 001196 218 K 218 (1125)
Q Consensus 218 ~ 218 (1125)
.
T Consensus 636 ~ 636 (971)
T 2x1g_F 636 E 636 (971)
T ss_dssp H
T ss_pred H
Confidence 3
No 106
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=56.36 E-value=1.1e+02 Score=33.12 Aligned_cols=136 Identities=14% Similarity=0.124 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccC------hhH---HHHHH
Q 001196 69 AQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATS------SSV---DLLLE 139 (1125)
Q Consensus 69 ~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~------s~l---~~~L~ 139 (1125)
.....-..++|..+....|.+...+++.|..+|.++++.++-.++++++.+-+-.=.+..... ... +..|+
T Consensus 67 ~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK 146 (257)
T 3gs3_A 67 MEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIK 146 (257)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 345566788898888999999999999999999988887777777777754211101111110 111 11122
Q ss_pred HHhh-------cCChHHH-HHHHHHHHhhcCCC-----------------cc---------chHHHHHHHHHHhhhcC--
Q 001196 140 RLCL-------EGSRRQA-KYAVHALAAITKDD-----------------GL---------KSLSVLYKRLVDMLEEK-- 183 (1125)
Q Consensus 140 ~lAl-------eGTPrqA-KyAVr~LaAls~d~-----------------~~---------~~ls~L~e~Lv~~Le~~-- 183 (1125)
...+ .|.+..| ||.-+++.+.+... ++ .-...+++.|+.-+...
T Consensus 147 ~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~i 226 (257)
T 3gs3_A 147 AQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHI 226 (257)
T ss_dssp HHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 2111 1334443 88888876555321 00 11345666666644432
Q ss_pred -C-CCchHHHHHHHHHhhccccc
Q 001196 184 -T-HLPAVLQSLGCIAQTAMPVF 204 (1125)
Q Consensus 184 -s-~l~T~L~aLgqIA~~aP~vf 204 (1125)
+ .+.+.|.+|+-|++.-|...
T Consensus 227 ss~~l~a~lnsL~~Iak~RP~~~ 249 (257)
T 3gs3_A 227 SSVNLIACTSSLCTIAKMRPIFM 249 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGH
T ss_pred chHHHHHHHHHHHHHHHhCcHHH
Confidence 1 57788999999999888764
No 107
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=55.22 E-value=8.7 Score=34.40 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=31.1
Q ss_pred CcccCceEEEecCC--CCceEEEEEEEecCCCC--eeEEEecC
Q 001196 824 EDLIGYRIKVWWPM--DKQFYEGTIKSYDPIKK--KHVILYDD 862 (1125)
Q Consensus 824 ~~lVG~rikV~WP~--D~~wY~G~V~~yd~~~~--kH~V~YdD 862 (1125)
.-.||.+|.|+|++ +..||.+.|...+...+ +..|.|..
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~g 47 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYG 47 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETT
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCC
Confidence 34599999999994 36899999999887655 47888874
No 108
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=53.06 E-value=40 Score=34.01 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccchhHHHHHHHHHHhccc
Q 001196 50 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGGT 122 (1125)
Q Consensus 50 kShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~L~~lL~d-~n~~vve~aLkaLAk~gk~ 122 (1125)
++.+..|.+++.. .+....-.|+.||..+.+.|...|...+ ++|++++.. .++.|.+.+|..+..|+..
T Consensus 51 keA~ral~krl~~----~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 51 KDCLKAIMKRVNH----KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 4555555555432 2345567799999999999999998765 566676654 4456778888888887654
Q ss_pred hh
Q 001196 123 IR 124 (1125)
Q Consensus 123 i~ 124 (1125)
|+
T Consensus 127 f~ 128 (163)
T 1x5b_A 127 FQ 128 (163)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 109
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=50.84 E-value=32 Score=34.26 Aligned_cols=71 Identities=8% Similarity=0.065 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh------ccchhHHHHHHHHH
Q 001196 50 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE------ENEIIKEGILHVLA 117 (1125)
Q Consensus 50 kShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~L~~lL~d------~n~~vve~aLkaLA 117 (1125)
++.+..|.+++.. .+....-.|+.||..+.+.|...|...+ ++|++++.. .+..|...+|..+.
T Consensus 37 k~a~rai~krl~~----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (148)
T 1mhq_A 37 THAPWLLAHKIQS----PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILF 112 (148)
T ss_dssp HHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHH
Confidence 4455555554431 3445677899999999999999998775 556666553 24467888899888
Q ss_pred Hhccchh
Q 001196 118 KAGGTIR 124 (1125)
Q Consensus 118 k~gk~i~ 124 (1125)
.|+..|+
T Consensus 113 ~W~~~f~ 119 (148)
T 1mhq_A 113 SWTVWFP 119 (148)
T ss_dssp HHHHHCT
T ss_pred HHHHHcC
Confidence 8875543
No 110
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=50.45 E-value=91 Score=38.23 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCcccc-------HHHHHHHHhhccchhHHHHHHHHHHhcc
Q 001196 49 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGT-------EEELVNLLKEENEIIKEGILHVLAKAGG 121 (1125)
Q Consensus 49 NkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~-------v~~L~~lL~d~n~~vve~aLkaLAk~gk 121 (1125)
+.++|+.||..+.. .+-...-.++++|..|....|.....+ +..|+.+|.+..+.+..++|..|....+
T Consensus 120 ~~~~i~~Ll~lL~~----~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 120 QQENVTLLLSLLEE----FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp STHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHhcC----ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence 56778888885432 222344568999999999999954443 5889999999888888888888887654
No 111
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.37 E-value=66 Score=34.03 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccchhHHHHHHHHHHhc
Q 001196 50 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAG 120 (1125)
Q Consensus 50 kShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~L~~lL~d-~n~~vve~aLkaLAk~g 120 (1125)
++.|..|.+++.. .+....-.|+.||..+.+.+...|...+ ++|++++.. .+..|.+.+|..+..|+
T Consensus 44 k~a~ral~krl~~----~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 44 KYAVNSIKKKVND----KNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4445555444431 2334566788888888888888887765 344444433 23345556666666554
No 112
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=48.48 E-value=25 Score=33.31 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=30.7
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecCCCC--eeEEEecC
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKK--KHVILYDD 862 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~--kH~V~YdD 862 (1125)
+.-.+|.+|-||| +..||.+.|.......+ +..|.|.+
T Consensus 21 ~~f~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~G 60 (102)
T 2f5k_A 21 PKFQEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSG 60 (102)
T ss_dssp CSCCTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETT
T ss_pred cccCCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCC
Confidence 4456999999999 67899999999875444 68888874
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=48.35 E-value=63 Score=38.32 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=76.1
Q ss_pred ccccHHHHHHHHhh--ccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccc
Q 001196 90 LGGTEEELVNLLKE--ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK 167 (1125)
Q Consensus 90 Fk~~v~~L~~lL~d--~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~ 167 (1125)
|..|+++-..+|.- .+......+-|.+++|-+.| +.....-+..+-+||.......-++|++.|..++.+ +
T Consensus 24 ~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~F----P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-- 96 (507)
T 3u0r_A 24 VGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHF----PELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-E-- 96 (507)
T ss_dssp GGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGC----GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T--
T ss_pred ccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC----hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h--
Confidence 45566666566654 33444555667777776654 445667788899999999998899999999988887 3
Q ss_pred hHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhcccc
Q 001196 168 SLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPV 203 (1125)
Q Consensus 168 ~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~v 203 (1125)
..+.+..-|+..|.... -+..+=.+|-+|.+.+|..
T Consensus 97 ~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~ 134 (507)
T 3u0r_A 97 NLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG 134 (507)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred hhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH
Confidence 35566667777676554 5666778888888888754
No 114
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=47.24 E-value=43 Score=37.59 Aligned_cols=117 Identities=13% Similarity=0.037 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHh---hCCcC---c--cccHHHHHHHHhhccchhHHHHHHHHHHhc
Q 001196 49 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILAR---FSPLL---L--GGTEEELVNLLKEENEIIKEGILHVLAKAG 120 (1125)
Q Consensus 49 NkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~---~~P~L---F--k~~v~~L~~lL~d~n~~vve~aLkaLAk~g 120 (1125)
..-.|+.|+..+..............|.-.|..|+. .+|.. + .+-+..|+.+|...+..+.+.++.+|+++.
T Consensus 212 ~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 344566666644321111001245667778888886 34432 1 123688999999877788999999999876
Q ss_pred cchhhhh-cccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCc
Q 001196 121 GTIREQL-AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDG 165 (1125)
Q Consensus 121 k~i~e~~-~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~ 165 (1125)
..-+++. .-.....++.|.++-..|+++.-+.|+.+|..++....
T Consensus 292 ~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 292 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp SSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 3222221 12345678889999888999888899888887776644
No 115
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=45.33 E-value=43 Score=34.11 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh------ccchhHHHHHHHHH
Q 001196 50 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE------ENEIIKEGILHVLA 117 (1125)
Q Consensus 50 kShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~L~~lL~d------~n~~vve~aLkaLA 117 (1125)
++.+..|.+++.. .|....-.|+.||..+.+.|...|...+ ++|++++.. .+..|...+|..+.
T Consensus 49 k~A~ral~krl~~----~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 49 QIAVRLLAHKIQS----PQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp HHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 4445555554432 3445667899999999999999999765 667777752 23467888899999
Q ss_pred Hhccchh
Q 001196 118 KAGGTIR 124 (1125)
Q Consensus 118 k~gk~i~ 124 (1125)
.|+..|+
T Consensus 125 ~W~~~f~ 131 (171)
T 1juq_A 125 SWTMALP 131 (171)
T ss_dssp HHHHHCT
T ss_pred HHHHHcC
Confidence 8875543
No 116
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=44.49 E-value=28 Score=32.27 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=30.2
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCC--eeEEEecCCC
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKK--KHVILYDDED 864 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~--kH~V~YdDGD 864 (1125)
.||.+|.|++ +..||.+.|.......+ +..|.|.+=.
T Consensus 25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~N 63 (92)
T 2ro0_A 25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYN 63 (92)
T ss_dssp CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC
Confidence 4999999998 88999999998876543 5788887544
No 117
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=44.30 E-value=58 Score=30.40 Aligned_cols=38 Identities=18% Similarity=0.070 Sum_probs=30.5
Q ss_pred cccCceEEEecCCCCceEEEEEEEecCCCC--eeEEEecCCC
Q 001196 825 DLIGYRIKVWWPMDKQFYEGTIKSYDPIKK--KHVILYDDED 864 (1125)
Q Consensus 825 ~lVG~rikV~WP~D~~wY~G~V~~yd~~~~--kH~V~YdDGD 864 (1125)
-.||.+|.|++ +..||.++|..-....+ +.-|.|.+=.
T Consensus 26 ~~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~N 65 (94)
T 2rnz_A 26 IIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYN 65 (94)
T ss_dssp CCTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSC
T ss_pred ccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC
Confidence 35999999997 78999999998776543 5888887554
No 118
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=43.79 E-value=84 Score=34.27 Aligned_cols=48 Identities=6% Similarity=0.164 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHhhCCcCccccH---HHHHHHHhhccchhHHHHHHHHH
Q 001196 70 QFMQSCMDILGILARFSPLLLGGTE---EELVNLLKEENEIIKEGILHVLA 117 (1125)
Q Consensus 70 ~~~~~AleLL~~IS~~~P~LFk~~v---~~L~~lL~d~n~~vve~aLkaLA 117 (1125)
.....++++|..+-..+..-+...+ ..++++|.+.|..|-..+|.++.
T Consensus 182 R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 182 RQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLV 232 (266)
T ss_dssp HHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3334444444444433433355566 77777777777766666666655
No 119
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=43.45 E-value=1.7e+02 Score=26.70 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=36.5
Q ss_pred ccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCC---ceeeecCcceE
Q 001196 826 LIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDED---VEVLRLDKERW 875 (1125)
Q Consensus 826 lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD---~E~L~L~~Ek~ 875 (1125)
-||.++.+.-+.. .||.+.|+--+....+-.|.||.=+ .||+.....++
T Consensus 21 ~vGmkLEA~D~~~-~~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I 72 (88)
T 2eqm_A 21 EIGARLEALDYLQ-KWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRL 72 (88)
T ss_dssp CSSCEEEEECTTS-CEEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCE
T ss_pred CCCCEEEEEcCCC-CeeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcE
Confidence 4999999988754 6999999999988888999997433 24444444443
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=43.30 E-value=85 Score=36.06 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=54.1
Q ss_pred HhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 001196 83 ARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAA 159 (1125)
Q Consensus 83 S~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaA 159 (1125)
-...|.+|....++|+++..+.+..+.-++...|+.+++...+ .-...++.|..|....+|..+|.||.|.+.
T Consensus 54 l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e----l~~~~l~~L~~LL~d~d~~V~K~~I~~~ts 126 (386)
T 3o2t_A 54 INKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE----LLLKLIANLNMLLRDENVNVVKKAILTMTQ 126 (386)
T ss_dssp HTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3368999999999999998887777777777777776643222 234566677777777788888999888774
No 121
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=42.39 E-value=88 Score=38.88 Aligned_cols=145 Identities=13% Similarity=0.075 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhhCCcCccccH-HHHHHHH----hhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCC
Q 001196 72 MQSCMDILGILARFSPLLLGGTE-EELVNLL----KEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGS 146 (1125)
Q Consensus 72 ~~~AleLL~~IS~~~P~LFk~~v-~~L~~lL----~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGT 146 (1125)
...+.++|..++...|.-.-..+ +.|...| ...+....+.+|.+|..++..+.+...+.-..+++.|..++. +.
T Consensus 424 r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~-~~ 502 (963)
T 2x19_B 424 RVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISI-SN 502 (963)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCC-CS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCC-Cc
Confidence 34577889888888774322222 3333444 223445688888888887755432111111112222222332 45
Q ss_pred hHHHHHHHHHHHhhcCC--CccchHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccccccchhHHHHHHHHH
Q 001196 147 RRQAKYAVHALAAITKD--DGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKS 217 (1125)
Q Consensus 147 PrqAKyAVr~LaAls~d--~~~~~ls~L~e~Lv~~Le~~s~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIiK 217 (1125)
|.-...|..+|..++.- ....++..++..|+..|....-......+|..|++.++..+..+-+.|+..+..
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~ 575 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQD 575 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66555566666644421 111345566777777674422223445667777777777787888888877654
No 122
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=42.29 E-value=34 Score=31.96 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=49.6
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHH
Q 001196 94 EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLY 173 (1125)
Q Consensus 94 v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~ 173 (1125)
+..|+.+|.+.++.+...++.+|..++. ...++.|..+....++..-..|+.+|..+. +. ..+
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-~~------~a~ 106 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG-GE------RVR 106 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC-SH------HHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-cH------HHH
Confidence 6888899998888888888998888763 224555555556678887888999988543 21 234
Q ss_pred HHHHHhhhc
Q 001196 174 KRLVDMLEE 182 (1125)
Q Consensus 174 e~Lv~~Le~ 182 (1125)
..|...|..
T Consensus 107 ~~L~~~l~d 115 (131)
T 1te4_A 107 AAMEKLAET 115 (131)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHhC
Confidence 555555543
No 123
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=41.54 E-value=46 Score=38.84 Aligned_cols=116 Identities=13% Similarity=0.042 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHh---hCCcC---c--cccHHHHHHHHhhccchhHHHHHHHHHHhc
Q 001196 49 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILAR---FSPLL---L--GGTEEELVNLLKEENEIIKEGILHVLAKAG 120 (1125)
Q Consensus 49 NkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~---~~P~L---F--k~~v~~L~~lL~d~n~~vve~aLkaLAk~g 120 (1125)
..-.|+.|+..+..............|.-.|..|+. .+|.. + .+-+..|+.+|...+..+.+.++.+|+++.
T Consensus 328 ~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 328 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 455677777744322111101245667788888886 35542 2 123578899998877778899999999876
Q ss_pred cchhhhh-cccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCC
Q 001196 121 GTIREQL-AATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 164 (1125)
Q Consensus 121 k~i~e~~-~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~ 164 (1125)
..-+++. .-.....++.|.++-..|++...+.|+.+|..++...
T Consensus 408 ~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp SSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 3222222 1234567888999888899998899988887666554
No 124
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=40.81 E-value=4.6e+02 Score=32.74 Aligned_cols=161 Identities=11% Similarity=0.141 Sum_probs=80.4
Q ss_pred HHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhh-----------CCcCccccHHHHHH----HHhh
Q 001196 39 LSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARF-----------SPLLLGGTEEELVN----LLKE 103 (1125)
Q Consensus 39 LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~-----------~P~LFk~~v~~L~~----lL~d 103 (1125)
++.|-+.. +.++++..+|..+.....+.+-.....|...|..+... .+..+..+...|+. +|..
T Consensus 481 ~lg~~~~~-~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 481 YIYTFRNQ-LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp HHHHTGGG-SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhh-CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 33343333 37788888877655443332223345566666666553 24557777665554 4433
Q ss_pred cc-----chhHHHHHHHHHHhccchhhhhcccCh----hHHHHHHHHhhcC-ChHHHHHHHHHHHhhcCCCccchHHHHH
Q 001196 104 EN-----EIIKEGILHVLAKAGGTIREQLAATSS----SVDLLLERLCLEG-SRRQAKYAVHALAAITKDDGLKSLSVLY 173 (1125)
Q Consensus 104 ~n-----~~vve~aLkaLAk~gk~i~e~~~~~~s----~l~~~L~~lAleG-TPrqAKyAVr~LaAls~d~~~~~ls~L~ 173 (1125)
.. ....+.++.+|+.+...+.+.+.|.-. .+...|...+... .+...-++..||.++....+...+..+.
T Consensus 560 ~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 639 (960)
T 1wa5_C 560 HGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV 639 (960)
T ss_dssp TCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred ccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 20 012345566666543333333433322 3344444444433 3445556788887666542222233344
Q ss_pred HHHHHh----hhcC-C-CCchHHHHHHHHHhhc
Q 001196 174 KRLVDM----LEEK-T-HLPAVLQSLGCIAQTA 200 (1125)
Q Consensus 174 e~Lv~~----Le~~-s-~l~T~L~aLgqIA~~a 200 (1125)
+.+++- |... . -.+..++.++.+....
T Consensus 640 ~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 640 DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 444432 3322 2 3455777777777766
No 125
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=40.38 E-value=74 Score=29.60 Aligned_cols=87 Identities=22% Similarity=0.350 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccC
Q 001196 52 HVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATS 131 (1125)
Q Consensus 52 hV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~ 131 (1125)
.++.|+..+. + .+......|...|..+.. ...+..|+.+|.+.++.+...++.+|..++.
T Consensus 43 ~~~~L~~~L~-d---~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------- 102 (131)
T 1te4_A 43 AFEPLLESLS-N---EDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------- 102 (131)
T ss_dssp THHHHHHGGG-C---SCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence 4677776433 2 222334445555554432 2347889999999888888899999998762
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHH
Q 001196 132 SSVDLLLERLCLEGSRRQAKYAVHALA 158 (1125)
Q Consensus 132 s~l~~~L~~lAleGTPrqAKyAVr~La 158 (1125)
....+.|..+....++.....|+.+|.
T Consensus 103 ~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 103 ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 234566666666666766666766654
No 126
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=39.04 E-value=58 Score=31.61 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=38.2
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecCcceEEEec
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELLD 879 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~~Ek~~~~~ 879 (1125)
|.-..|..|+|-|++. .-|.|...++... ...+|..+||-. +.+..+.|--++
T Consensus 62 GpP~~G~~V~V~W~DG-~~y~a~f~g~~~~-~~Y~V~feDgs~--~~~kR~~iyt~~ 114 (118)
T 2qqr_A 62 GPPAEGEVVQVRWTDG-QVYGAKFVASHPI-QMYQVEFEDGSQ--LVVKRDDVYTLD 114 (118)
T ss_dssp CCCCTTCEEEEECTTS-CEEEEEEEEEEEE-EEEEEEETTSCE--EEECGGGEEETT
T ss_pred CCCCCCCEEEEEcCCC-CEeeeEEeceeEE-EEEEEEECCCCE--EEEcHHHeeccc
Confidence 4445899999999965 5899988876643 457788899984 556666664443
No 127
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=38.69 E-value=3.5e+02 Score=29.42 Aligned_cols=147 Identities=18% Similarity=0.100 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHh----hccch
Q 001196 32 LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLK----EENEI 107 (1125)
Q Consensus 32 l~etlk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~----d~n~~ 107 (1125)
..+.++..+..+ |+.+-...|+. . +-.....|++.|...-...|.-.-..++-|++-+. +.|..
T Consensus 35 ~v~~L~~~~~~~----~~~~~~~~lfs---~-----d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~ 102 (266)
T 2of3_A 35 HISQLQTLLGNQ----AKVSLMSQLFH---K-----DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPA 102 (266)
T ss_dssp HHHHHHHHHHTT----BCHHHHHHHTC---S-----CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHHHh----ccHHHHHHhcC---C-----CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 444444444333 77766555543 1 12333445566655555677655556666666544 67888
Q ss_pred hHHHHHHHHHHhccchhhhhccc----ChhHHHHHHHHhhcCCh-----HHHHHHHHHHHhhcCCCccchHHHHHHHHHH
Q 001196 108 IKEGILHVLAKAGGTIREQLAAT----SSSVDLLLERLCLEGSR-----RQAKYAVHALAAITKDDGLKSLSVLYKRLVD 178 (1125)
Q Consensus 108 vve~aLkaLAk~gk~i~e~~~~~----~s~l~~~L~~lAleGTP-----rqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~ 178 (1125)
+.-.+|.+|..+-..+.+..... ...|++.|...+ |.+ .+++.+++.|..+. ..+.++..|++
T Consensus 103 v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKl--Gd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~ 174 (266)
T 2of3_A 103 ALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKT--GEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLD 174 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGG--GCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHH
Confidence 88888988887643343321111 245778776666 554 33444554554333 23457888888
Q ss_pred hhhcCCCCchHHHHHHHHHhh
Q 001196 179 MLEEKTHLPAVLQSLGCIAQT 199 (1125)
Q Consensus 179 ~Le~~s~l~T~L~aLgqIA~~ 199 (1125)
.+..+ |.-+...+|-+|+.+
T Consensus 175 g~ksK-N~R~R~e~l~~l~~l 194 (266)
T 2of3_A 175 ALKSK-NARQRSECLLVIEYY 194 (266)
T ss_dssp GGGCS-CHHHHHHHHHHHHHH
T ss_pred HHccC-CHHHHHHHHHHHHHH
Confidence 77444 455555555554443
No 128
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=38.66 E-value=1.1e+02 Score=39.19 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHH-HhhCCcCccccHHHHHHHHhhc-cchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCCh
Q 001196 70 QFMQSCMDILGIL-ARFSPLLLGGTEEELVNLLKEE-NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSR 147 (1125)
Q Consensus 70 ~~~~~AleLL~~I-S~~~P~LFk~~v~~L~~lL~d~-n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTP 147 (1125)
.....|...+..| ...+|.-.+.-...|...|... .......+|++|..+....++++...-..+++.+......--|
T Consensus 110 ~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~ 189 (986)
T 2iw3_A 110 EIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKK 189 (986)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcH
Confidence 3444555444444 4455545555668888888664 4667888999999887665666665566788888876665557
Q ss_pred HHHHHHHHHHHhhcC
Q 001196 148 RQAKYAVHALAAITK 162 (1125)
Q Consensus 148 rqAKyAVr~LaAls~ 162 (1125)
..+|.|..++.+++.
T Consensus 190 ~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 190 EVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHh
Confidence 777888888765553
No 129
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=38.36 E-value=71 Score=38.57 Aligned_cols=117 Identities=13% Similarity=0.043 Sum_probs=76.9
Q ss_pred ccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCc----C-ccccHHHHHHHHhhccchhHHHHHHHHHHh
Q 001196 45 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPL----L-LGGTEEELVNLLKEENEIIKEGILHVLAKA 119 (1125)
Q Consensus 45 ~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~----L-Fk~~v~~L~~lL~d~n~~vve~aLkaLAk~ 119 (1125)
..-|....|+.|+..+.. + +......|...|..|+..++. + -.+.+..|+.+|...+..+.+.+..+|.++
T Consensus 42 ~~~~~~~~i~~LV~~L~s---~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nL 117 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGF---R-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI 117 (584)
T ss_dssp CCCCCCCCHHHHHHHTTC---S-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHCC---C-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 455666778888885532 1 223344455677778765543 2 234579999999998888888888888877
Q ss_pred ccc--hhhhhcccChhHHHHHHHHhhcC-ChHHHHHHHHHHHhhcCCCc
Q 001196 120 GGT--IREQLAATSSSVDLLLERLCLEG-SRRQAKYAVHALAAITKDDG 165 (1125)
Q Consensus 120 gk~--i~e~~~~~~s~l~~~L~~lAleG-TPrqAKyAVr~LaAls~d~~ 165 (1125)
+.. -.....-.....++.|.++...+ ++..-+.|+.+|..++....
T Consensus 118 a~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~ 166 (584)
T 3l6x_A 118 SFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166 (584)
T ss_dssp TSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG
T ss_pred HccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch
Confidence 641 11112223456778888888764 56656888889987776543
No 130
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=38.04 E-value=1.8e+02 Score=30.60 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=59.9
Q ss_pred ccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhh------hcccChhHHHHHHHHhhcCChHHH-HHHHHHHHhhcC
Q 001196 90 LGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ------LAATSSSVDLLLERLCLEGSRRQA-KYAVHALAAITK 162 (1125)
Q Consensus 90 Fk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~------~~~~~s~l~~~L~~lAleGTPrqA-KyAVr~LaAls~ 162 (1125)
|.....-|.++|.|.|..++..+|++|..+...+... +...-..+++.|...|+..+.... ..|..+|..++.
T Consensus 53 ~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~ 132 (278)
T 4ffb_C 53 YWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG 132 (278)
T ss_dssp TTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 5555567778888999988888888887654322111 111223445555555554443333 345666654543
Q ss_pred CCccchHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhh
Q 001196 163 DDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQT 199 (1125)
Q Consensus 163 d~~~~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~ 199 (1125)
... ....+++.|+..|.... .....|..|+.+...
T Consensus 133 ~~~--~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 133 LDT--SITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp TSS--SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hcC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 221 12345677777676554 334456666655544
No 131
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=37.96 E-value=68 Score=33.57 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccchhHHHHHHHHHHhcc
Q 001196 49 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGG 121 (1125)
Q Consensus 49 NkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~L~~lL~d-~n~~vve~aLkaLAk~gk 121 (1125)
-++.+..|.+++.. .+....-.|+.||..+.+.+...|...+ ++|++++.. .+..|.+.+|..+..|+.
T Consensus 40 ~k~a~r~l~krl~~----~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 40 PKNAFAAIKKKMNS----PNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 44555666555532 3445667789999999999988887654 445555543 223455555655555543
No 132
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=37.49 E-value=41 Score=32.64 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=34.4
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCcee
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEV 867 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~ 867 (1125)
++--||.+|..-|+ +..||.|+|++-... --+.|.++||-.-.
T Consensus 4 ~~v~vGq~V~akh~-ngryy~~~V~~~~~~-~~y~V~F~DgS~s~ 46 (118)
T 2qqr_A 4 QSITAGQKVISKHK-NGRFYQCEVVRLTTE-TFYEVNFDDGSFSD 46 (118)
T ss_dssp SCCCTTCEEEEECT-TSSEEEEEEEEEEEE-EEEEEEETTSCEEE
T ss_pred ceeccCCEEEEECC-CCCEEeEEEEEEeeE-EEEEEEcCCCCccC
Confidence 34459999999999 778999999997543 45889999997654
No 133
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=36.23 E-value=3.8e+02 Score=33.30 Aligned_cols=144 Identities=8% Similarity=-0.039 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhCCcCccccH-HHHHHHHhh-----ccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhc-
Q 001196 72 MQSCMDILGILARFSPLLLGGTE-EELVNLLKE-----ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLE- 144 (1125)
Q Consensus 72 ~~~AleLL~~IS~~~P~LFk~~v-~~L~~lL~d-----~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAle- 144 (1125)
...+.++|..++...|..+-.++ ..|...|.. .+....+.+|.+|..++..+.....+.-..++..|..+...
T Consensus 438 R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d 517 (971)
T 2x1g_F 438 RQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEK 517 (971)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccc
Confidence 35577888888888883333333 333344443 35567889999999887654422211112244444444432
Q ss_pred CChHHHHHHHHHHHhhcCC--CccchHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccccccchhHHHHHHHH
Q 001196 145 GSRRQAKYAVHALAAITKD--DGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIK 216 (1125)
Q Consensus 145 GTPrqAKyAVr~LaAls~d--~~~~~ls~L~e~Lv~~Le~~s~l~T~L~aLgqIA~~aP~vfe~~~~eI~~fIi 216 (1125)
..|.-..-|..+|..++.- ....++..++..|+..|+ ..-....-.+|..|.+.++..+..+-+.|+..+.
T Consensus 518 ~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~ 590 (971)
T 2x1g_F 518 LNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLKPYADPLLNACH 590 (971)
T ss_dssp SCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3565555666666654421 112456777888887774 2222334455666666555555555556665544
No 134
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=36.06 E-value=2.1e+02 Score=32.60 Aligned_cols=107 Identities=13% Similarity=-0.040 Sum_probs=68.5
Q ss_pred cHHHHHHHHhhccchhHHHHHHHHHHhccchhh-hhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCC-Cccc-h-
Q 001196 93 TEEELVNLLKEENEIIKEGILHVLAKAGGTIRE-QLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKD-DGLK-S- 168 (1125)
Q Consensus 93 ~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e-~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d-~~~~-~- 168 (1125)
.++.|+.+|...++.+...++.+|.++...-+. ...-.....++.|.++...+++..-..|+.+|..++.. .+.. .
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 367899999988888888888888887532111 11223456788899998889988888999999877764 2210 0
Q ss_pred -HHHHHHHHHHhhh-cCC--CCchHHHHHHHHHhh
Q 001196 169 -LSVLYKRLVDMLE-EKT--HLPAVLQSLGCIAQT 199 (1125)
Q Consensus 169 -ls~L~e~Lv~~Le-~~s--~l~T~L~aLgqIA~~ 199 (1125)
-...+..|+..|. .++ -......+|+.|+..
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 0112556666676 332 122345566666654
No 135
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=35.74 E-value=47 Score=32.46 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=37.0
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecCcceEEEe
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLDKERWELL 878 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~~Ek~~~~ 878 (1125)
|.-..|..|+|-|++. .-|.|...+.... ...+|..+||. .+.+..+.|--+
T Consensus 63 GpP~~G~~V~V~W~DG-~~y~a~f~g~~~~-~~YtV~FeDgs--~~~~kR~~iyt~ 114 (123)
T 2xdp_A 63 GPPAEGEVVQVKWPDG-KLYGAKYFGSNIA-HMYQVEFEDGS--QIAMKREDIYTL 114 (123)
T ss_dssp CCCCTTCEEEEECTTS-CEEEEEEEEEEEE-EEEEEECTTSC--EEEEEGGGCCCS
T ss_pred CCCCCCCEEEEEcCCC-CEEeEEEeeeeeE-EEEEEEECCCC--eEEecHHHcccc
Confidence 4445899999999955 5899998888754 45778889996 344455555333
No 136
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=35.32 E-value=78 Score=34.62 Aligned_cols=114 Identities=12% Similarity=0.029 Sum_probs=74.5
Q ss_pred ccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcC---cc--ccHHHHHHHHhhccchhHHHHHHHHHHhcc
Q 001196 47 LFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL---LG--GTEEELVNLLKEENEIIKEGILHVLAKAGG 121 (1125)
Q Consensus 47 ifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L---Fk--~~v~~L~~lL~d~n~~vve~aLkaLAk~gk 121 (1125)
+++--.|+.|+..+... .+......|.-.|-.|...+|.. |. +-+..|+.+|...+..+...++-+|+.+..
T Consensus 120 vv~~g~l~~Ll~LL~~~---~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~ 196 (296)
T 1xqr_A 120 VLGLGALRKLLRLLDRD---ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 196 (296)
T ss_dssp HHHTTHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHccC---CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 34445677777755431 12345566777788887777652 32 336888899988888888888888887642
Q ss_pred chhhh-hcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCC
Q 001196 122 TIREQ-LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKD 163 (1125)
Q Consensus 122 ~i~e~-~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d 163 (1125)
.-++. .......+++.|..+-..+++..-..|.++|..++..
T Consensus 197 ~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 197 GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 21111 1113456788888887777777667888888777655
No 137
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=35.07 E-value=92 Score=31.11 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH------HH-HHHHHhh-cc--chhHHHHHHHHHH
Q 001196 49 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EE-LVNLLKE-EN--EIIKEGILHVLAK 118 (1125)
Q Consensus 49 NkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v------~~-L~~lL~d-~n--~~vve~aLkaLAk 118 (1125)
-++.+..|.+++.. ..|....-.|+.||..+.+.|-..|...+ ++ |++++.. .+ ..|.+.+|..+..
T Consensus 51 ~k~a~ral~krl~~---~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 51 PKDALRAVKKRIVG---NKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 35666666666542 12345567899999999999999998865 45 5666643 22 3577888888888
Q ss_pred hccchh
Q 001196 119 AGGTIR 124 (1125)
Q Consensus 119 ~gk~i~ 124 (1125)
|+..|+
T Consensus 128 W~~~f~ 133 (157)
T 1elk_A 128 WADAFR 133 (157)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 875553
No 138
>4h75_A Spindlin-1; tudor domain, H3K4ME3 binding, methylation, gene regulation; HET: M3L NHE; 2.10A {Homo sapiens} PDB: 2ns2_A
Probab=34.73 E-value=57 Score=34.35 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=35.1
Q ss_pred CCCCCcccCceEEEecCCCC---ceEEEEEEEecCCCC-eeEEEecCCC
Q 001196 820 GVNIEDLIGYRIKVWWPMDK---QFYEGTIKSYDPIKK-KHVILYDDED 864 (1125)
Q Consensus 820 ~~~~~~lVG~rikV~WP~D~---~wY~G~V~~yd~~~~-kH~V~YdDGD 864 (1125)
.....++|||||.=-|-.++ +.+.|+|-..=|.+- -..|.||-=|
T Consensus 23 s~~~~nIVGCRIsH~WKEg~epvt~Wk~tVL~Qlp~npSLYLvKYDgiD 71 (238)
T 4h75_A 23 SQPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFD 71 (238)
T ss_dssp CCCCCCCTTCEEEEEEECTTSCEEEEEEEEEEECTTCTTCEEEEETTCC
T ss_pred cccCCceeEEeeecccccCCCccceeeEEEeeeccCCCcEEEEEecCcc
Confidence 34467899999999998865 668999999888765 4888887333
No 139
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=32.10 E-value=2.5e+02 Score=29.74 Aligned_cols=91 Identities=12% Similarity=-0.011 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhCCc----Cc-cccHHHHHHHHhhccchhHHHHHHHHHHhccchhhh-hcccChhHHHHHHHHhh-cC
Q 001196 73 QSCMDILGILARFSPL----LL-GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-LAATSSSVDLLLERLCL-EG 145 (1125)
Q Consensus 73 ~~AleLL~~IS~~~P~----LF-k~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~-~~~~~s~l~~~L~~lAl-eG 145 (1125)
..|...|..++..+|. ++ .+-+..|+.+|...++.+.+.++.+|.+++..-+++ ..-....-++.|.++.. .+
T Consensus 28 ~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~ 107 (233)
T 3tt9_A 28 SAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR 107 (233)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCC
Confidence 3445566777766553 22 345799999999888878888888888765321111 11123456777777776 47
Q ss_pred ChHHHHHHHHHHHhhcCC
Q 001196 146 SRRQAKYAVHALAAITKD 163 (1125)
Q Consensus 146 TPrqAKyAVr~LaAls~d 163 (1125)
++...+.|+.+|..++..
T Consensus 108 ~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 108 DLETKKQITGLLWNLSSN 125 (233)
T ss_dssp CHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHcC
Confidence 788888888888866654
No 140
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=31.83 E-value=93 Score=28.97 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=29.0
Q ss_pred CceEEEecCCCCceEEEEEEEecCCC-----CeeEEEecCCC
Q 001196 828 GYRIKVWWPMDKQFYEGTIKSYDPIK-----KKHVILYDDED 864 (1125)
Q Consensus 828 G~rikV~WP~D~~wY~G~V~~yd~~~-----~kH~V~YdDGD 864 (1125)
|.+|-|+|+ |..||.+.|..-.... .+..|.|..-.
T Consensus 18 ~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~N 58 (92)
T 2bud_A 18 DKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLN 58 (92)
T ss_dssp TSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSC
T ss_pred CCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCcc
Confidence 899999997 7789999999866543 36888887554
No 141
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=35.81 E-value=11 Score=36.29 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=38.6
Q ss_pred CCCCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCceeeecC
Q 001196 821 VNIEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEVLRLD 871 (1125)
Q Consensus 821 ~~~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~L~L~ 871 (1125)
+.|.--||..|.+--| |..|-+|+|...--. -.++|++||||+..|...
T Consensus 53 ikG~l~vG~~ve~~~~-~~~~~~~~I~~i~D~-S~YtVVFdDGD~ktLrRt 101 (118)
T 2lcd_A 53 VKGPLRVGAIVETRTS-DGSFQEAIISKLTDA-SWYTVVFDDGDERTLRRT 101 (118)
Confidence 3455569999999998 468999999877554 358899999999887643
No 142
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=29.26 E-value=71 Score=31.98 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccH--HHHH-----HHHhhc---cchhHHHHHHHHHHh
Q 001196 50 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE--EELV-----NLLKEE---NEIIKEGILHVLAKA 119 (1125)
Q Consensus 50 kShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v--~~L~-----~lL~d~---n~~vve~aLkaLAk~ 119 (1125)
++.+..|.+++.. +.+....-.|+.||..+.+.|-..|...+ .+++ +++... ...|...+|..+..|
T Consensus 52 keA~ral~KRl~~---~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~W 128 (152)
T 3rru_A 52 KDAVKALKKRISK---NYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTW 128 (152)
T ss_dssp HHHHHHHHHHHTT---CCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Confidence 4444444444431 11223445699999999999999999887 3444 334332 124788889999988
Q ss_pred ccchh
Q 001196 120 GGTIR 124 (1125)
Q Consensus 120 gk~i~ 124 (1125)
+-.|+
T Consensus 129 a~~F~ 133 (152)
T 3rru_A 129 SQGFP 133 (152)
T ss_dssp HTCCS
T ss_pred HHHhC
Confidence 76654
No 143
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=28.79 E-value=79 Score=33.84 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=36.2
Q ss_pred cCceEEEecCCCCceEEEEEEEecCCCC---------eeEEEecCC-CceeeecCcceE
Q 001196 827 IGYRIKVWWPMDKQFYEGTIKSYDPIKK---------KHVILYDDE-DVEVLRLDKERW 875 (1125)
Q Consensus 827 VG~rikV~WP~D~~wY~G~V~~yd~~~~---------kH~V~YdDG-D~E~L~L~~Ek~ 875 (1125)
||--|...|....+||+|.|+.+..... -.+|.|||= +...+.|....+
T Consensus 5 i~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~i 63 (226)
T 3ask_A 5 VNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDV 63 (226)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGE
T ss_pred cCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccccc
Confidence 7888999999999999999999988552 355888654 455555544433
No 144
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=28.23 E-value=2.6e+02 Score=34.35 Aligned_cols=130 Identities=18% Similarity=0.133 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhhCCcCcccc-HHHHHHHHhh--ccchhHHHHHHHHHHhccchh----------------hhhc---cc
Q 001196 73 QSCMDILGILARFSPLLLGGT-EEELVNLLKE--ENEIIKEGILHVLAKAGGTIR----------------EQLA---AT 130 (1125)
Q Consensus 73 ~~AleLL~~IS~~~P~LFk~~-v~~L~~lL~d--~n~~vve~aLkaLAk~gk~i~----------------e~~~---~~ 130 (1125)
..|..=|+-+|+.||..+..+ ...|+..|.. +|..++..+|.+|..+-..-. .++. ..
T Consensus 40 R~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~ 119 (651)
T 3grl_A 40 RNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIK 119 (651)
T ss_dssp HHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHc
Confidence 457788888899999888877 6899999987 355567778888864311000 0110 01
Q ss_pred ChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHH------HHHHHHHHhhhcCC-CCc-hHHHHHHHHHhhccc
Q 001196 131 SSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLS------VLYKRLVDMLEEKT-HLP-AVLQSLGCIAQTAMP 202 (1125)
Q Consensus 131 ~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls------~L~e~Lv~~Le~~s-~l~-T~L~aLgqIA~~aP~ 202 (1125)
....+..|-.+-....-..=-||+++|.+++.......-. .=+..|++-|.... -+. ..|..|..|.+..+.
T Consensus 120 ~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~ 199 (651)
T 3grl_A 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGA 199 (651)
T ss_dssp STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHH
Confidence 2334455555544444444468888888777554321111 12556677676654 222 245556666655554
No 145
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=26.81 E-value=1.9e+02 Score=31.27 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=48.6
Q ss_pred HHhhCCcCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 001196 82 LARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAA 159 (1125)
Q Consensus 82 IS~~~P~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaA 159 (1125)
+-...|.+|-...+.++.+..+.+..+.-.+...|+.+++.. ...-...++.|..++...+|...|.|+.|.+.
T Consensus 43 ~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 43 VLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQVIKRVIQACGS 116 (257)
T ss_dssp HTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444578888777888888765655445555555555554321 22345677777788777788888888887763
No 146
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=25.84 E-value=2.2e+02 Score=36.13 Aligned_cols=73 Identities=8% Similarity=0.094 Sum_probs=41.9
Q ss_pred cCChHHHHHHHHHHHhhcCCCcc-----------chHHHHHHHHHHhhhcCC--CCchHHHHHHHHHhhccc--cccchh
Q 001196 144 EGSRRQAKYAVHALAAITKDDGL-----------KSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMP--VFETRE 208 (1125)
Q Consensus 144 eGTPrqAKyAVr~LaAls~d~~~-----------~~ls~L~e~Lv~~Le~~s--~l~T~L~aLgqIA~~aP~--vfe~~~ 208 (1125)
...|+-.-+|+.+|..++.+-.. .++..|+..+...+..-. .....+.++|.|+...|+ .+....
T Consensus 551 ~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~ 630 (1049)
T 3m1i_C 551 ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLL 630 (1049)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34577777888887766654221 234555555554443222 445678999999887772 233334
Q ss_pred HHHHHHHH
Q 001196 209 SEIEEFIK 216 (1125)
Q Consensus 209 ~eI~~fIi 216 (1125)
..++..++
T Consensus 631 ~~l~~~~~ 638 (1049)
T 3m1i_C 631 SDLMQLPN 638 (1049)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHHH
Confidence 44544443
No 147
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=25.51 E-value=4.1e+02 Score=27.80 Aligned_cols=97 Identities=7% Similarity=0.019 Sum_probs=49.9
Q ss_pred HHHHhccCCc-----HHHHHHHHHHHhcccccCH----HHHHHHHHHH-HhccCcchhhhHHHHHHHHHHHHhhCCcCcc
Q 001196 22 LLKILGAKHR-----LYDFLSTLSMKCSYLLFNK----EHVKEILLEV-AAQKSSANAQFMQSCMDILGILARFSPLLLG 91 (1125)
Q Consensus 22 LLKRLg~k~~-----l~etlk~LL~RsS~lifNk----ShV~~LL~~v-s~~~s~~~~~~~~~AleLL~~IS~~~P~LFk 91 (1125)
|-+.|...|. .++++..|+..+....... ..+..+|..+ .++..+........|++.|..+....-...
T Consensus 60 lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~- 138 (278)
T 4ffb_C 60 FAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT- 138 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-
Confidence 3445556664 3556666665544333222 2233333322 222122223455667777666654432221
Q ss_pred ccHHHHHHHHhhccchhHHHHHHHHHHh
Q 001196 92 GTEEELVNLLKEENEIIKEGILHVLAKA 119 (1125)
Q Consensus 92 ~~v~~L~~lL~d~n~~vve~aLkaLAk~ 119 (1125)
...+.|+..+...|+.+...+|..|+.+
T Consensus 139 ~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 139 QSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 1246666777778888888888888865
No 148
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=25.12 E-value=1.1e+03 Score=30.27 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=59.4
Q ss_pred HHHHHHHhcccccCHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhh----ccchhHHH
Q 001196 36 LSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKE----ENEIIKEG 111 (1125)
Q Consensus 36 lk~LL~RsS~lifNkShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d----~n~~vve~ 111 (1125)
..-++..+.+..++.-|..-|.+.+.-+.+. -......|...|..+-..+|..+.--+..|++.|.. .+..-..+
T Consensus 115 ~~R~~~~~~~r~~t~l~~~ll~dL~~Ls~S~-Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKG 193 (997)
T 1vsy_5 115 QSRVLLHSTNRKASKLENLLLVDIIQLATSL-YPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQV 193 (997)
T ss_dssp HHHHHHSCCCBCCCSHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred HHHHHhhccccCCChHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHH
Confidence 4445556777788888877777755443222 234667899999999999999998888999988876 23345778
Q ss_pred HHHHHH
Q 001196 112 ILHVLA 117 (1125)
Q Consensus 112 aLkaLA 117 (1125)
+|.+|.
T Consensus 194 aLy~L~ 199 (997)
T 1vsy_5 194 ILNVLL 199 (997)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 888777
No 149
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=24.65 E-value=25 Score=34.31 Aligned_cols=43 Identities=9% Similarity=0.181 Sum_probs=34.7
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecCCCCeeEEEecCCCcee
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKHVILYDDEDVEV 867 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH~V~YdDGD~E~ 867 (1125)
++--||.+|..-|+ +..||.|.|++-.. .-.+.|.++||-.-.
T Consensus 5 ~~v~vGq~V~ak~~-ngryy~~~V~~~~~-~~~y~V~F~DgS~s~ 47 (123)
T 2xdp_A 5 KVISVGQTVITKHR-NTRYYSCRVMAVTS-QTFYEVMFDDGSFSR 47 (123)
T ss_dssp CCCCTTCCCCCCCC-CCCCCCCEEEEEEE-EEEEEEEETTSCEEE
T ss_pred cccccCCEEEEECC-CCcEEeEEEEEEee-EEEEEEEcCCCCccC
Confidence 34458999999999 58899999999885 345899999998654
No 150
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=24.25 E-value=63 Score=29.73 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=27.0
Q ss_pred CcccCceEEEecCCCCceEEEEEEEecCCCCee
Q 001196 824 EDLIGYRIKVWWPMDKQFYEGTIKSYDPIKKKH 856 (1125)
Q Consensus 824 ~~lVG~rikV~WP~D~~wY~G~V~~yd~~~~kH 856 (1125)
..+||+.|+|-=- |+..|.|.|.+|||.+.-=
T Consensus 13 ~~li~KeV~V~l~-dg~~y~G~l~tvDp~s~sI 44 (86)
T 1y96_A 13 QDYIYKEVRVTAS-EKNEYKGWVLTTDPVSANI 44 (86)
T ss_dssp HHTTTCEEEEEET-TTEEEEEEEEEECTTTCCE
T ss_pred HhhcCCEEEEEEc-CCCEEEEEEEEECCCceEE
Confidence 4679999999766 6789999999999987643
No 151
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=24.21 E-value=4.5e+02 Score=32.83 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcccccC--HHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccchhH
Q 001196 32 LYDFLSTLSMKCSYLLFN--KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIK 109 (1125)
Q Consensus 32 l~etlk~LL~RsS~lifN--kShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~LFk~~v~~L~~lL~d~n~~vv 109 (1125)
+-+.++.|+.|.+----. .++|..|...+... -........+.|..+....|.- .+....|+.+|...++.+.
T Consensus 8 ~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~----l~~~r~~i~~~l~~~~~~~P~K-t~vyAaLVgllN~k~pe~G 82 (771)
T 1h2v_C 8 TEDHLESLICKVGEKSACSLESNLEGLAGVLEAD----LPNYKSKILRLLCTVARLLPEK-LTIYTTLVGLLNARNYNFG 82 (771)
T ss_dssp --CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHcCChhHH
Confidence 445566666665542111 14455554433221 1223344556666666666643 4444777777777666544
Q ss_pred HHHHHHHHHhccchhhhhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc--chHHHHHHHHHHhhh
Q 001196 110 EGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL--KSLSVLYKRLVDMLE 181 (1125)
Q Consensus 110 e~aLkaLAk~gk~i~e~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~--~~ls~L~e~Lv~~Le 181 (1125)
..++.-+ ...+++.-..|..+.||..+|+|+.+..-.-. ..+=.|++.+++...
T Consensus 83 ~~lv~~l------------------~~~f~~~l~~~~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~ 138 (771)
T 1h2v_C 83 GEFVEAM------------------IRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQ 138 (771)
T ss_dssp HHHHHHH------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHH------------------HHHHHHHHHccChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHHHhhh
Confidence 4433322 22333333468999999999999988764221 123346777776544
No 152
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=24.13 E-value=76 Score=33.68 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=34.7
Q ss_pred CCcccCceEEEecCCCCceEEEEEEEecC--CCCeeEEEecCCCceee
Q 001196 823 IEDLIGYRIKVWWPMDKQFYEGTIKSYDP--IKKKHVILYDDEDVEVL 868 (1125)
Q Consensus 823 ~~~lVG~rikV~WP~D~~wY~G~V~~yd~--~~~kH~V~YdDGD~E~L 868 (1125)
|+=-||++|-.-|- ...||.|+|+.--+ ...+..|.++++....|
T Consensus 7 ~~l~Vg~~vlg~k~-~~~W~rg~v~~I~~~~~g~~YkVkF~~~g~~iv 53 (213)
T 3dlm_A 7 GDLIVSMRILGKKR-TKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLL 53 (213)
T ss_dssp TTEETTCEEEEECT-TSBEEEEEEEEEEEETTEEEEEEEESSSCEEEE
T ss_pred CcEEEccEEEEEec-CCcEEEEEEEEEEECCCCeEEEEEEcCCCCEEe
Confidence 44459999999995 57899999999555 34679999996666543
No 153
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=23.29 E-value=1.3e+03 Score=29.80 Aligned_cols=58 Identities=26% Similarity=0.277 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhcCCcccccccchHHHHHHHHHhhhcCCCcCCcCCChhhHhhHHHHHHHHHHhhhccc
Q 001196 241 CLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW 312 (1125)
Q Consensus 241 ~~aKI~ALK~LvN~Lla~~~~~~~~~~~~llkLL~~ll~~GEL~~~~~tp~~~kArLRLaAa~sLLKLAr~~ 312 (1125)
......+|+++.+++-=..-......-..++.++..++. -..+|.+|..||..|+..+
T Consensus 221 ~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~--------------~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 221 CRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLN--------------EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGG--------------CTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcC--------------CHHHHHHHHHHHHHHHhCC
Confidence 334567899887665321111110111125566654431 1358999999999999753
No 154
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=23.21 E-value=4.5e+02 Score=31.62 Aligned_cols=95 Identities=14% Similarity=-0.043 Sum_probs=61.5
Q ss_pred cCccccHHHHHHHHhhccchhHHHHHHHHHHhccchhh-hhcccChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCC--C
Q 001196 88 LLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIRE-QLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKD--D 164 (1125)
Q Consensus 88 ~LFk~~v~~L~~lL~d~n~~vve~aLkaLAk~gk~i~e-~~~~~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d--~ 164 (1125)
..+...+..|+.+|...++.+...+..+|.++...-.+ ...-.....++.|.++-..+++..-.+|+.+|..++.. .
T Consensus 44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 34445589999999988877777777777766531111 11112445678899998899999889999999877763 2
Q ss_pred cc---chHHHHHHHHHHhhhc
Q 001196 165 GL---KSLSVLYKRLVDMLEE 182 (1125)
Q Consensus 165 ~~---~~ls~L~e~Lv~~Le~ 182 (1125)
+. ..-...+..|+..|..
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s 144 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRK 144 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcC
Confidence 21 0111235566666664
No 155
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=22.30 E-value=1.7e+02 Score=29.50 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=34.7
Q ss_pred ccCceEEEecCC-CCceEEEEEEEec----CCCCeeEEEecCCCceeee
Q 001196 826 LIGYRIKVWWPM-DKQFYEGTIKSYD----PIKKKHVILYDDEDVEVLR 869 (1125)
Q Consensus 826 lVG~rikV~WP~-D~~wY~G~V~~yd----~~~~kH~V~YdDGD~E~L~ 869 (1125)
.+-.||=-||++ ...||.++..+-. ....+..|+|||+..-.++
T Consensus 7 ~~~NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~~~V~ 55 (153)
T 2fhd_A 7 SFKNRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDATMSTVN 55 (153)
T ss_dssp CGGGEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSCEEEEE
T ss_pred cccceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCCCCccC
Confidence 346788899995 5789999999877 4567899999999665533
No 156
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=22.04 E-value=2.5e+02 Score=35.11 Aligned_cols=40 Identities=13% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHhhCCcC
Q 001196 50 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL 89 (1125)
Q Consensus 50 kShV~~LL~~vs~~~s~~~~~~~~~AleLL~~IS~~~P~L 89 (1125)
+.||..||..+--..+..+-.-...+..++..|+..-|-+
T Consensus 421 r~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~ 460 (799)
T 1vsy_4 421 RVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQ 460 (799)
T ss_dssp GGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBC
T ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcccc
Confidence 6899999997654433333344566788888888877755
No 157
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.86 E-value=5.8e+02 Score=25.50 Aligned_cols=79 Identities=20% Similarity=0.185 Sum_probs=56.3
Q ss_pred cChhHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhcCCCCchHHHHHHHHHhhccccccchhH
Q 001196 130 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRES 209 (1125)
Q Consensus 130 ~~s~l~~~L~~lAleGTPrqAKyAVr~LaAls~d~~~~~ls~L~e~Lv~~Le~~s~l~T~L~aLgqIA~~aP~vfe~~~~ 209 (1125)
....|+..+..++++..+++-..+..+|..+.. +.....++.+. |...|..|--|+.-.|.+.+.-..
T Consensus 41 ~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~--~~ls~~~i~~G----------f~~lle~ldDl~iDiP~a~~~la~ 108 (165)
T 2rg8_A 41 MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG--TVMSTTDVEKS----------FDKLLKDLPELALDTPRAPQLVGQ 108 (165)
T ss_dssp GGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT--TTBCHHHHHHH----------HHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--CCCCHHHHHHH----------HHHHHHhChhhcccccchHHHHHH
Confidence 345688999999999999888888888887754 33333443333 455688888888888888866566
Q ss_pred HHHHHHHHhhh
Q 001196 210 EIEEFIKSKIL 220 (1125)
Q Consensus 210 eI~~fIiK~LL 220 (1125)
.|.+.|+.++|
T Consensus 109 fiarav~d~~l 119 (165)
T 2rg8_A 109 FIARAVGDGIL 119 (165)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHHcCCC
Confidence 66666666555
Done!